Query 024312
Match_columns 269
No_of_seqs 195 out of 1111
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 100.0 3.8E-34 8.3E-39 252.9 19.3 216 2-259 7-232 (237)
2 PF00335 Tetraspannin: Tetrasp 99.9 3.1E-24 6.6E-29 183.2 2.3 211 3-255 1-221 (221)
3 cd03161 TM4SF2_6_like_LEL Tetr 98.7 6.4E-09 1.4E-13 79.9 1.9 74 127-227 28-104 (104)
4 cd03154 TM4SF3_like_LEL Tetras 98.6 1.3E-08 2.8E-13 77.9 2.3 66 128-227 34-100 (100)
5 cd03163 TM4SF8_like_LEL Tetras 98.6 1E-08 2.2E-13 79.1 1.3 68 128-227 30-104 (105)
6 cd03159 TM4SF9_like_LEL Tetras 98.6 1.9E-08 4.2E-13 79.8 1.4 74 128-227 29-121 (121)
7 cd03156 uroplakin_I_like_LEL T 98.5 5.2E-08 1.1E-12 75.8 2.0 74 127-226 31-113 (114)
8 cd03164 CD53_like_LEL Tetraspa 98.4 4.2E-07 9.1E-12 67.6 5.6 58 128-231 29-86 (86)
9 cd03160 CD37_CD82_like_LEL Tet 98.4 1.9E-07 4.2E-12 73.5 3.9 77 128-227 33-116 (117)
10 cd03167 oculospanin_like_LEL T 98.4 3.7E-07 8.1E-12 72.5 4.8 74 128-227 29-120 (120)
11 cd03166 CD63_LEL Tetraspanin, 98.3 5.4E-07 1.2E-11 68.7 4.3 68 127-227 28-99 (99)
12 cd03158 penumbra_like_LEL Tetr 98.3 9.6E-07 2.1E-11 69.8 4.8 39 127-173 28-76 (119)
13 cd03165 NET-5_like_LEL Tetrasp 98.3 8.8E-07 1.9E-11 67.3 4.0 66 128-227 31-98 (98)
14 cd03157 TM4SF12_like_LEL Tetra 98.2 2.6E-06 5.6E-11 66.1 6.3 68 128-225 32-101 (103)
15 cd03155 CD151_like_LEL Tetrasp 98.2 2.8E-06 6E-11 65.9 4.7 70 127-227 31-110 (110)
16 cd03152 CD9_LEL Tetraspanin, e 98.1 1.2E-06 2.5E-11 65.1 1.2 28 129-170 32-59 (84)
17 cd03127 tetraspanin_LEL Tetras 98.1 6.9E-06 1.5E-10 60.7 5.0 62 127-226 28-89 (90)
18 cd03162 peripherin_like_LEL Te 98.0 7.4E-06 1.6E-10 67.3 4.6 79 128-226 34-142 (143)
19 cd03151 CD81_like_LEL Tetraspa 95.6 0.0052 1.1E-07 45.6 1.1 31 128-169 31-61 (84)
20 PRK12585 putative monovalent c 86.1 7.8 0.00017 33.3 9.3 54 8-61 5-59 (197)
21 PF04156 IncA: IncA protein; 84.6 2.1 4.6E-05 36.2 5.4 21 10-30 6-26 (191)
22 PF05915 DUF872: Eukaryotic pr 81.6 3.5 7.5E-05 32.6 5.0 47 10-57 45-91 (115)
23 COG4993 Gcd Glucose dehydrogen 75.1 7.7 0.00017 39.2 6.3 64 8-82 3-66 (773)
24 PF04103 CD20: CD20-like famil 72.9 1.1 2.5E-05 35.8 0.0 68 14-83 5-72 (150)
25 PF11297 DUF3098: Protein of u 69.5 12 0.00026 26.9 4.6 23 11-33 6-28 (69)
26 PF09323 DUF1980: Domain of un 69.5 12 0.00027 31.6 5.6 25 45-69 35-59 (182)
27 PF07086 DUF1352: Protein of u 68.7 68 0.0015 27.5 9.9 80 8-91 40-120 (186)
28 PF03729 DUF308: Short repeat 68.3 35 0.00076 23.3 7.1 47 18-68 2-48 (72)
29 cd07912 Tweety_N N-terminal do 65.6 12 0.00027 36.1 5.3 41 43-83 209-250 (418)
30 KOG4433 Tweety transmembrane/c 64.8 12 0.00026 36.6 5.0 43 42-84 209-252 (526)
31 PF05640 NKAIN: Na,K-Atpase In 64.6 63 0.0014 28.0 8.9 42 45-86 36-77 (200)
32 PF10724 DUF2516: Protein of u 63.9 53 0.0011 25.3 7.5 27 6-32 3-29 (100)
33 PF11384 DUF3188: Protein of u 61.9 16 0.00035 24.3 3.8 21 39-59 22-42 (49)
34 PF06341 DUF1056: Protein of u 55.6 70 0.0015 22.5 6.3 47 3-58 6-52 (63)
35 PRK12586 putative monovalent c 55.1 1.2E+02 0.0026 25.0 9.6 31 4-34 4-34 (145)
36 PF11127 DUF2892: Protein of u 53.0 47 0.001 22.9 5.3 42 16-64 14-55 (66)
37 COG3247 HdeD Uncharacterized c 52.3 53 0.0012 28.1 6.4 51 14-68 21-71 (185)
38 PF15176 LRR19-TM: Leucine-ric 52.0 24 0.00052 27.2 3.8 41 225-265 15-56 (102)
39 KOG4753 Predicted membrane pro 49.4 8.7 0.00019 30.4 1.1 10 45-54 87-96 (124)
40 PRK07946 putative monovalent c 49.1 45 0.00098 28.0 5.4 48 11-60 3-51 (163)
41 KOG4054 Uncharacterized conser 48.8 1.7E+02 0.0036 24.8 8.8 79 8-89 40-118 (183)
42 PF08566 Pam17: Mitochondrial 48.3 1.7E+02 0.0037 24.8 9.3 25 42-66 74-99 (173)
43 PF06770 Arif-1: Actin-rearran 46.7 1.2E+02 0.0025 26.3 7.6 52 14-65 4-64 (196)
44 PF09925 DUF2157: Predicted me 44.4 1.7E+02 0.0036 23.6 8.5 24 10-33 31-54 (145)
45 PF15050 SCIMP: SCIMP protein 42.0 46 0.001 26.5 4.1 27 221-248 2-28 (133)
46 PF02439 Adeno_E3_CR2: Adenovi 40.3 59 0.0013 20.5 3.6 24 229-252 8-31 (38)
47 PRK12660 putative monovalent c 40.0 1.2E+02 0.0026 23.7 6.3 49 12-62 2-51 (114)
48 PF11381 DUF3185: Protein of u 39.7 20 0.00043 24.9 1.5 15 45-59 44-58 (59)
49 PF05454 DAG1: Dystroglycan (D 39.3 9.9 0.00022 34.9 0.0 31 227-257 145-175 (290)
50 PF04906 Tweety: Tweety; Inte 37.3 12 0.00026 36.0 0.2 33 50-82 194-226 (406)
51 PRK02935 hypothetical protein; 36.9 1.5E+02 0.0033 23.1 6.1 29 43-76 17-45 (110)
52 PF15125 TMEM238: TMEM238 prot 36.8 1.5E+02 0.0032 21.0 5.5 44 9-60 7-50 (65)
53 PF09972 DUF2207: Predicted me 36.3 51 0.0011 31.6 4.4 16 45-60 400-415 (511)
54 PF02439 Adeno_E3_CR2: Adenovi 35.8 80 0.0017 19.9 3.7 31 229-259 5-35 (38)
55 PF06772 LtrA: Bacterial low t 35.6 3.2E+02 0.0068 25.3 9.5 54 13-66 256-309 (354)
56 PF12877 DUF3827: Domain of un 35.5 20 0.00044 36.3 1.5 33 226-258 268-300 (684)
57 TIGR00941 2a6301s03 Multicompo 34.0 1.2E+02 0.0026 23.5 5.3 47 12-59 2-48 (104)
58 PF11023 DUF2614: Protein of u 33.9 1.4E+02 0.0031 23.5 5.6 29 43-76 16-44 (114)
59 PHA02680 ORF090 IMV phosphoryl 33.7 79 0.0017 23.8 4.0 34 214-247 25-65 (91)
60 PF11694 DUF3290: Protein of u 33.7 92 0.002 25.7 4.9 41 221-261 6-46 (149)
61 PF12805 FUSC-like: FUSC-like 33.6 2.1E+02 0.0045 25.7 7.7 13 50-62 32-44 (284)
62 PF04156 IncA: IncA protein; 33.6 1.5E+02 0.0032 24.8 6.3 15 45-59 11-25 (191)
63 PF05374 Mu-conotoxin: Mu-Cono 32.4 22 0.00048 19.5 0.7 8 169-176 3-10 (22)
64 PF06195 DUF996: Protein of un 31.5 2.2E+02 0.0048 23.1 6.7 19 15-33 2-20 (139)
65 PF14387 DUF4418: Domain of un 31.4 2.7E+02 0.0058 22.2 7.5 46 17-62 43-90 (124)
66 PF05767 Pox_A14: Poxvirus vir 31.1 66 0.0014 24.3 3.2 23 226-248 43-65 (92)
67 PHA02898 virion envelope prote 31.0 56 0.0012 24.6 2.8 23 226-248 43-65 (92)
68 PF00558 Vpu: Vpu protein; In 30.9 63 0.0014 23.9 3.1 33 227-259 4-37 (81)
69 PF03142 Chitin_synth_2: Chiti 30.1 3.6E+02 0.0077 27.0 9.1 20 10-29 400-419 (527)
70 PRK08600 putative monovalent c 29.5 1.2E+02 0.0026 23.8 4.7 47 13-60 3-49 (113)
71 PRK12659 putative monovalent c 29.0 1.5E+02 0.0032 23.4 5.2 48 12-60 2-49 (117)
72 PRK10209 acid-resistance membr 28.9 2.9E+02 0.0062 23.4 7.4 49 14-66 23-71 (190)
73 KOG4812 Golgi-associated prote 28.5 1.3E+02 0.0029 26.9 5.2 26 41-66 225-250 (262)
74 KOG3658 Tumor necrosis factor- 28.4 69 0.0015 32.8 3.8 30 218-247 674-703 (764)
75 PF15048 OSTbeta: Organic solu 28.4 77 0.0017 25.4 3.4 24 5-28 36-59 (125)
76 PF11239 DUF3040: Protein of u 28.3 2.2E+02 0.0047 20.6 5.7 15 14-28 47-61 (82)
77 PF06168 DUF981: Protein of un 27.0 4.1E+02 0.0089 22.9 9.0 47 14-60 44-92 (191)
78 PRK12658 putative monovalent c 26.9 1.1E+02 0.0024 24.5 4.1 47 12-59 2-48 (125)
79 PF09971 DUF2206: Predicted me 26.8 2.8E+02 0.0061 26.3 7.5 27 70-98 217-243 (367)
80 CHL00015 ndhE NADH dehydrogena 26.2 2.9E+02 0.0063 20.8 7.0 74 17-94 8-82 (101)
81 PF13706 PepSY_TM_3: PepSY-ass 26.1 68 0.0015 19.8 2.2 22 45-66 12-33 (37)
82 PRK05715 NADH:ubiquinone oxido 26.0 2.8E+02 0.0061 20.7 7.1 73 16-94 8-81 (100)
83 COG2245 Predicted membrane pro 25.6 4.2E+02 0.0091 22.5 9.4 20 14-33 29-48 (182)
84 PF13630 SdpI: SdpI/YhfL prote 24.8 2.4E+02 0.0053 19.5 5.9 18 42-59 31-48 (76)
85 PF01102 Glycophorin_A: Glycop 24.4 1.2E+02 0.0027 24.1 3.9 11 247-257 84-94 (122)
86 PRK08389 putative monovalent c 24.0 3.5E+02 0.0076 21.0 8.5 48 14-62 4-52 (114)
87 PF04854 DUF624: Protein of un 23.8 75 0.0016 22.4 2.5 20 9-28 2-24 (77)
88 PF06749 DUF1218: Protein of u 23.8 1.6E+02 0.0035 22.1 4.4 28 5-32 37-64 (97)
89 PTZ00370 STEVOR; Provisional 23.7 1E+02 0.0022 28.3 3.7 13 249-261 276-288 (296)
90 TIGR01478 STEVOR variant surfa 23.7 98 0.0021 28.4 3.6 13 249-261 280-292 (295)
91 PF15471 TMEM171: Transmembran 23.7 76 0.0016 28.9 2.9 48 7-54 23-76 (319)
92 COG3374 Predicted membrane pro 23.6 1.7E+02 0.0036 25.3 4.8 20 41-60 43-62 (197)
93 COG0713 NuoK NADH:ubiquinone o 23.6 3.5E+02 0.0075 20.9 6.9 78 15-98 7-87 (100)
94 COG2149 Predicted membrane pro 23.6 2.5E+02 0.0055 22.3 5.4 13 45-57 63-75 (120)
95 PF13903 Claudin_2: PMP-22/EMP 23.1 2.8E+02 0.006 22.0 6.1 29 45-73 74-103 (172)
96 PRK09094 putative monovalent c 22.8 2.2E+02 0.0048 22.4 5.0 46 13-59 3-48 (114)
97 PF07343 DUF1475: Protein of u 22.7 5.6E+02 0.012 22.9 8.2 73 7-79 132-206 (254)
98 PF15345 TMEM51: Transmembrane 22.5 79 0.0017 28.1 2.7 18 43-60 62-79 (233)
99 PF06781 UPF0233: Uncharacteri 22.4 2E+02 0.0043 21.5 4.5 13 46-58 69-81 (87)
100 PF05478 Prominin: Prominin; 22.4 1.1E+02 0.0025 32.0 4.4 29 68-96 136-164 (806)
101 PF06724 DUF1206: Domain of Un 21.5 92 0.002 21.9 2.5 20 13-32 48-67 (73)
102 PF13572 DUF4134: Domain of un 20.5 3.9E+02 0.0085 20.4 6.6 18 45-62 47-64 (98)
103 PRK12587 putative monovalent c 20.5 4.3E+02 0.0094 20.8 10.0 31 4-34 2-32 (118)
104 KOG3950 Gamma/delta sarcoglyca 20.5 1.3E+02 0.0029 27.0 3.7 26 70-95 36-61 (292)
105 PF14340 DUF4395: Domain of un 20.4 1.4E+02 0.0031 23.9 3.6 30 228-257 100-130 (131)
106 PHA03048 IMV membrane protein; 20.1 1.5E+02 0.0032 22.4 3.3 21 227-247 43-63 (93)
107 PF12666 PrgI: PrgI family pro 20.1 2.2E+02 0.0049 20.8 4.5 11 88-98 59-69 (93)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=252.92 Aligned_cols=216 Identities=19% Similarity=0.308 Sum_probs=164.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchh-----hh--hhHHHHHHHHHHHHHHhhhhhhhccchhhHHHH
Q 024312 2 GVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIH-----LF--RWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFY 74 (269)
Q Consensus 2 ~~~k~~l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~-----~~--~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y 74 (269)
++.||+++++|+++|++|++++++|+|+..+... ... +. .+.+|++|.+++++|++||+||+|||+|+|.+|
T Consensus 7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~-~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y 85 (237)
T KOG3882|consen 7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGF-LSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSY 85 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccc-hhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHH
Confidence 5899999999999999999999999999988641 112 12 233899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhheeecCCCcccccCcchhhhhhhhchHHHhhhccC---ccchHHHHHhhhcCCcccCcccCC
Q 024312 75 LCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVD---SKNWNKIRACLADTDTCSKLSQQY 151 (269)
Q Consensus 75 ~~~l~~l~i~el~~~i~~~~~~~~~~~~~~~~~~~~~y~~~~~~~wlq~~~~~---~~~wd~iq~cl~~~~~Ccg~~~~~ 151 (269)
++++++++++|+++++++++++++.+.+. ++ +..++-.+.+-++ ++.||.+|. +++|||.++
T Consensus 86 ~~~l~l~~i~e~~~~i~~~~~~~~l~~~~------~~---~~~~~~~~~y~~~~~~~~~~d~~Q~----~~~CCG~~~-- 150 (237)
T KOG3882|consen 86 FILLLLLFIAELAAGILAFVFRDSLRDEL------EE---QLLKSIWNNYSSDPDLGEAWDKLQR----ELKCCGVNG-- 150 (237)
T ss_pred HHHHHHHHHHHHHHHHHhheeHHHHHHHH------HH---HHHHHHHHHhCCCccHHHHHHHHHH----hccCCcCCC--
Confidence 99999999999999999999887643221 10 0111111111111 257999986 899999987
Q ss_pred CChhhhhhhcCCccCcCccCCCCCCCCcCCCCccccCCCCCCCCCCCCCcccccccccccCcchHHHHHHHHHHhhHHHH
Q 024312 152 VTADQFFSAHISPLQSGCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQSQLCYNCSSCKAGLLGNLRNEWRKAN 231 (269)
Q Consensus 152 ~~~~d~~~~~~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~~~cy~c~gC~~~i~~~l~~~~~~v~ 231 (269)
+.||......++|+|||++.... . ......+ ..| .+||.+++.++++++..+++
T Consensus 151 --~~~~~~~~~~~vP~SCC~~~~~~------~-------------~~~~~~~----~~~-~~GC~~~~~~~~~~~~~~i~ 204 (237)
T KOG3882|consen 151 --YSDYFNCSSNNVPPSCCKRTRRQ------K-------------FPQDVPD----NIY-TEGCLEKLSSWLESNLLIIG 204 (237)
T ss_pred --chHHhcCCCCCCCcccCCCcccc------c-------------ccccchh----hhh-ccccHHHHHHHHHHhhHHHH
Confidence 57886543222999999871110 0 0000000 123 38999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 024312 232 IILIVAVVILIWVYLIACSAFKNAQTED 259 (269)
Q Consensus 232 ~v~i~i~~~~i~~~~~ac~l~~~~~~~~ 259 (269)
+++++++++|++++++|+++.+..+++.
T Consensus 205 ~~~~~i~~~~~~~~~~a~~l~~~i~~~~ 232 (237)
T KOG3882|consen 205 GVGLGIAVLELLGMILACCLANAIRNQR 232 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999877765
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.89 E-value=3.1e-24 Score=183.22 Aligned_cols=211 Identities=24% Similarity=0.357 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCc-----chhhhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHH
Q 024312 3 VSNNITAVLNFIALLCSIPIIASGIWLAS-KPDNE-----CIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLC 76 (269)
Q Consensus 3 ~~k~~l~~~N~l~~l~G~~ll~~Gi~~~~-~~~~~-----~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~ 76 (269)
|+|++++++|++++++|++++++|+|+.. ....+ ........++.+|+++++++++|++|+.++|++++..|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 67999999999999999999999999932 21111 1111223367799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhheeecCCCcccccCcchhhhhhhhchHHHhhh----ccCccchHHHHHhhhcCCcccCcccCCC
Q 024312 77 VMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDH----VVDSKNWNKIRACLADTDTCSKLSQQYV 152 (269)
Q Consensus 77 ~l~~l~i~el~~~i~~~~~~~~~~~~~~~~~~~~~y~~~~~~~wlq~~----~~~~~~wd~iq~cl~~~~~Ccg~~~~~~ 152 (269)
++++++++|+++++.++.++++.... .+ ++++.+.++. ....+.||.+|. +++|||.++
T Consensus 81 ~~~~~~v~~~~~~i~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~iq~----~~~CCG~~~--- 143 (221)
T PF00335_consen 81 LLILLFVLELVVGIVAFSYRDQLNSS------LK----DGLSLRCMKSYNSNESFSEAWDNIQE----KFECCGVNS--- 143 (221)
T ss_dssp -------------------HHHHHHH------HH----HHHHHHHHHSSTT-CHHHHHHHHHHH----HHT--SSTT---
T ss_pred chhhHHHHHHHHHHhhhhcccccccc------cc----ccccchhhhccccccchhhheecccc----cccccCCCC---
Confidence 99999999999999999987642211 01 0000111111 123566777765 999999886
Q ss_pred ChhhhhhhcCCccCcCccCCCCCCCCcCCCCccccCCCCCCCCCCCCCcccccccccccCcchHHHHHHHHHHhhHHHHH
Q 024312 153 TADQFFSAHISPLQSGCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQSQLCYNCSSCKAGLLGNLRNEWRKANI 232 (269)
Q Consensus 153 ~~~d~~~~~~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~~~cy~c~gC~~~i~~~l~~~~~~v~~ 232 (269)
+.||......+ +.+...+ ..+ ..+..+++......+||++++.++++++...+++
T Consensus 144 -~~d~~~~~~~~-~~~~~~~-~~~----------------------~~~~~~~~~~~~~~~gC~~~l~~~~~~~~~~~~~ 198 (221)
T PF00335_consen 144 -PDDWFTSKWSS-CSSPDSC-PDC----------------------QCPDDCSSENSIYTRGCYDKLREYLRSYLKYIGI 198 (221)
T ss_dssp -CHHHHHHHHHT-----------T----------------------CS-TTCCCCHCCTST-HHHHHHHHHCT-------
T ss_pred -Ccccccccccc-ccccccc-ccc----------------------cccccccccccccCCChHHHHHHHHHHHHHHHHH
Confidence 67775432110 1111000 000 0000011112334589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 024312 233 ILIVAVVILIWVYLIACSAFKNA 255 (269)
Q Consensus 233 v~i~i~~~~i~~~~~ac~l~~~~ 255 (269)
++++++++|++++++|+++.|++
T Consensus 199 ~~~~~~~l~~~~~~~a~~l~~~~ 221 (221)
T PF00335_consen 199 VSLAILVLQLIGIILACCLCRHI 221 (221)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999988763
No 3
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=98.69 E-value=6.4e-09 Score=79.93 Aligned_cols=74 Identities=12% Similarity=0.277 Sum_probs=47.4
Q ss_pred CccchHHHHHhhhcCCcccCcccCCCChhhhhhhc---CCccCcCccCCCCCCCCcCCCCccccCCCCCCCCCCCCCccc
Q 024312 127 DSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH---ISPLQSGCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSN 203 (269)
Q Consensus 127 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~---~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n 203 (269)
.+..||.+|. .++|||.++ +.||.... ..+||.|||+.+..|+....+. + .+
T Consensus 28 ~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~vP~SCC~~~~~C~~~~~~~-----~------------~~ 82 (104)
T cd03161 28 RSDAVDTVQR----TLHCCGVEN----YTDWLNSPYFLEKGIPLSCCKNRSDCSPQDLKN-----L------------TK 82 (104)
T ss_pred HHHHHHHHHh----cCcCcCCCC----hhhhhccccccCCCcCcccccCCCCCCcccccc-----c------------cc
Confidence 3568999886 899999986 77885321 2369999997655675321100 0 00
Q ss_pred ccccccccCcchHHHHHHHHHHhh
Q 024312 204 DQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 204 ~~~~~cy~c~gC~~~i~~~l~~~~ 227 (269)
. ...-|. +||..++.++++++.
T Consensus 83 ~-~~~i~~-~GC~~~~~~~~~~n~ 104 (104)
T cd03161 83 A-ATKVYQ-QGCFTLVTSFMEANM 104 (104)
T ss_pred c-ccccch-hccHHHHHHHHHHhC
Confidence 0 001233 799999999999873
No 4
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=98.64 E-value=1.3e-08 Score=77.85 Aligned_cols=66 Identities=12% Similarity=0.235 Sum_probs=41.8
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhhcCCccCcCcc-CCCCCCCCcCCCCccccCCCCCCCCCCCCCcccccc
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQSGCC-KPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQS 206 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC-~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~ 206 (269)
++.||.+|. +++|||.++ +.||+. ..||.||| .++..|+.. ..+ .+.
T Consensus 34 ~~~~d~lQ~----~l~CCG~~~----~~d~~~---~~vP~SCcc~~~~~c~~~----------------~~~---~~~-- 81 (100)
T cd03154 34 KKSLEKFQK----ELKCCGLVN----GADDWG---NDIPASCNCTTTQSDCVV----------------AYY---GGS-- 81 (100)
T ss_pred HHHHHHHHH----cCCCCCCCC----chhhcc---CCCCCCCcCCCCCCCccc----------------ccC---CCc--
Confidence 567999886 999999875 445542 47999995 444444310 000 000
Q ss_pred cccccCcchHHHHHHHHHHhh
Q 024312 207 QLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 207 ~~cy~c~gC~~~i~~~l~~~~ 227 (269)
.-|. +||..+|.++++++.
T Consensus 82 -~~~~-~GC~~~i~~~~~~~~ 100 (100)
T cd03154 82 -NVYK-EPCISKIKDFLKKNL 100 (100)
T ss_pred -Cccc-cccHHHHHHHHHhhC
Confidence 0122 789999999999873
No 5
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=98.63 E-value=1e-08 Score=79.15 Aligned_cols=68 Identities=18% Similarity=0.344 Sum_probs=45.2
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhhc------CCccCcCccCCCC-CCCCcCCCCccccCCCCCCCCCCCCC
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH------ISPLQSGCCKPPT-ICGFSYVNPTLWLNPVNPTGDPDCFL 200 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~------~~~vp~sCC~~p~-~Cg~~~~n~t~w~~~~~~~~~~dC~~ 200 (269)
++.||.+|. .++|||.++ +.||.... ..+||.|||..+. .|+-..
T Consensus 30 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~vP~SCC~~~~~~C~~~~-------------------- 81 (105)
T cd03163 30 SRAVDYLQR----QLQCCGIHN----YTDWENTPWFKESKNNSVPLSCCKETFTSCTGSL-------------------- 81 (105)
T ss_pred HHHHHHHHH----hCcccCCCC----HHHHhhchhhhcCCCCccCcCccCCCCCCcccCC--------------------
Confidence 578999886 899999887 77884210 2469999996532 453210
Q ss_pred cccccccccccCcchHHHHHHHHHHhh
Q 024312 201 WSNDQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 201 ~~n~~~~~cy~c~gC~~~i~~~l~~~~ 227 (269)
.... .-|. +||..++.++++++.
T Consensus 82 --~~~~-~i~~-~GC~~~~~~~~~~~~ 104 (105)
T cd03163 82 --TQPK-DLYQ-EGCEAKLVKKLQEVM 104 (105)
T ss_pred --CCCC-chhh-hccHHHHHHHHHHHh
Confidence 0000 1233 799999999999875
No 6
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=98.57 E-value=1.9e-08 Score=79.85 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=44.8
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhh-c-----------CCccCcCccCC-------CCCCCCcCCCCccccC
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSA-H-----------ISPLQSGCCKP-------PTICGFSYVNPTLWLN 188 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~-~-----------~~~vp~sCC~~-------p~~Cg~~~~n~t~w~~ 188 (269)
++.||.+|. .++|||.++ +.||... . ..+||.|||.+ ...|+....+.
T Consensus 29 ~~~~D~iQ~----~l~CCG~~~----~~DW~~~~~~~~~~~~~~~~~~~vP~SCC~~~~~~~~~~~~C~~~~~~~----- 95 (121)
T cd03159 29 QNLIDFLQE----YWQCCGARG----PDDWNLNIYFNCTDSNPSRERCGVPFSCCVKDPAEDVVNTQCGYDVRKK----- 95 (121)
T ss_pred HHHHHHHHH----hccCCCCCC----hHHhcccccccccCCCCCCCCCCCCcccccCCcccccccCccCcccccc-----
Confidence 578999986 999999987 7777421 1 12499999963 22454211000
Q ss_pred CCCCCCCCCCCCcccccccccccCcchHHHHHHHHHHhh
Q 024312 189 PVNPTGDPDCFLWSNDQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 189 ~~~~~~~~dC~~~~n~~~~~cy~c~gC~~~i~~~l~~~~ 227 (269)
+. ... ...-|. +||..++.++++++.
T Consensus 96 ~~-----------~~~-~~~i~~-~GC~~~l~~~~~~n~ 121 (121)
T cd03159 96 PE-----------LEL-QHHIHT-KGCVQAFEKWLQDNL 121 (121)
T ss_pred cc-----------ccc-cCCchH-hhCHHHHHHHHHhcC
Confidence 00 000 001233 799999999999873
No 7
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=98.49 E-value=5.2e-08 Score=75.83 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=45.2
Q ss_pred CccchHHHHHhhhcCCcccCcccCCCChhhhhhh---------cCCccCcCccCCCCCCCCcCCCCccccCCCCCCCCCC
Q 024312 127 DSKNWNKIRACLADTDTCSKLSQQYVTADQFFSA---------HISPLQSGCCKPPTICGFSYVNPTLWLNPVNPTGDPD 197 (269)
Q Consensus 127 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~---------~~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~d 197 (269)
.+..||.+|. .++|||.++ +.||... ...+||.|||+++... .. ...
T Consensus 31 ~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~~vP~SCC~~~~~~-~~---------------~~~ 86 (114)
T cd03156 31 ITSTWNRVMI----ELKCCGVNG----PTDFVDSTSFFRQKNEPNSPYPESCCKRNSNS-QI---------------VDL 86 (114)
T ss_pred HHHHHHHHHh----cccCcCCCC----cHHHHhhhHHhccCCCCCCcCCHHHcCccccc-cc---------------ccc
Confidence 4678999986 999999987 6777532 2357999999754311 00 001
Q ss_pred CCCcccccccccccCcchHHHHHHHHHHh
Q 024312 198 CFLWSNDQSQLCYNCSSCKAGLLGNLRNE 226 (269)
Q Consensus 198 C~~~~n~~~~~cy~c~gC~~~i~~~l~~~ 226 (269)
|..-... ...-|. +||..++.++++++
T Consensus 87 ~~~~~~~-~~~~~~-~GC~~~l~~~~~~~ 113 (114)
T cd03156 87 DCPKLGS-PNSYNK-KGCYEKLSNPIERY 113 (114)
T ss_pred cCCCCCc-chhhhh-cCchHHHHHHHHhc
Confidence 1100000 011233 79999999999986
No 8
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=98.44 E-value=4.2e-07 Score=67.65 Aligned_cols=58 Identities=17% Similarity=0.371 Sum_probs=44.9
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhhcCCccCcCccCCCCCCCCcCCCCccccCCCCCCCCCCCCCccccccc
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQSGCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQSQ 207 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~~ 207 (269)
+..||.+|. +++|||.++ +.||. ..+|+|||+.+ | .
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~----~~Dw~----~~vP~SCC~~~--~----------------------~-------- 64 (86)
T cd03164 29 SEAWDMIQS----NLQCCGING----TTDWG----SGVPSSCCSSD--T----------------------E-------- 64 (86)
T ss_pred HHHHHHHHH----HhcCCCCCC----hhhhC----CCCChhhcCCC--C----------------------c--------
Confidence 577999886 899999886 78884 46899999531 1 0
Q ss_pred ccccCcchHHHHHHHHHHhhHHHH
Q 024312 208 LCYNCSSCKAGLLGNLRNEWRKAN 231 (269)
Q Consensus 208 ~cy~c~gC~~~i~~~l~~~~~~v~ 231 (269)
.|. +||..++.++++++..++|
T Consensus 65 -~~~-~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 65 -YKV-EGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred -ccc-ccHHHHHHHHHHHHHHHhC
Confidence 122 6899999999999998875
No 9
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=98.43 E-value=1.9e-07 Score=73.46 Aligned_cols=77 Identities=12% Similarity=0.235 Sum_probs=46.0
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhhc------CCccCcCccCCCCC-CCCcCCCCccccCCCCCCCCCCCCC
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH------ISPLQSGCCKPPTI-CGFSYVNPTLWLNPVNPTGDPDCFL 200 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~------~~~vp~sCC~~p~~-Cg~~~~n~t~w~~~~~~~~~~dC~~ 200 (269)
++.||.+|. .++|||.++ +.||.... ..+||.|||.+... ++.. ....+|..
T Consensus 33 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~vP~SCC~~~~~~~~~~-------------~~~~~C~~ 91 (117)
T cd03160 33 EEAWDYVQF----QLQCCGWTG----PQDWTDNSLIKNSSEPLYPCSCCNSSATADSPR-------------PSKGFCEA 91 (117)
T ss_pred HHHHHHHHh----hCcccCCCC----chhHHhchhccCCCCCCCCHhhhcCCccccccC-------------CCCcccCC
Confidence 567999876 899999886 67775211 12699999975421 1110 01123422
Q ss_pred cccccccccccCcchHHHHHHHHHHhh
Q 024312 201 WSNDQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 201 ~~n~~~~~cy~c~gC~~~i~~~l~~~~ 227 (269)
...+. ..-|. +||..++.++++++.
T Consensus 92 ~~~~~-~~iy~-~GC~~~l~~~~~~n~ 116 (117)
T cd03160 92 PASLD-WPVYQ-EGCMEKLQSWLNENL 116 (117)
T ss_pred CCccc-cchHH-HhhHHHHHHHHHHhc
Confidence 11000 11243 799999999999885
No 10
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=98.40 E-value=3.7e-07 Score=72.50 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=44.9
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhh-cC---------CccCcCccCCCC--------CCCCcCCCCccccCC
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSA-HI---------SPLQSGCCKPPT--------ICGFSYVNPTLWLNP 189 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~-~~---------~~vp~sCC~~p~--------~Cg~~~~n~t~w~~~ 189 (269)
+..||.+|. .++|||.++ +.||... .. .+||.|||+++. .|+......
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~~~~~~~~~~C~~~~~~~------ 94 (120)
T cd03167 29 RFLIDQVQL----GLQCCGASS----YQDWQQNLYFNCSSPGVQACSLPASCCIDPREDGAVVNDQCGFGALGL------ 94 (120)
T ss_pred HHHHHHHHH----hccCCCCCC----hHHhcccccccCCCCCCCCCCCCcCccCCCccccccccCCCCCCcccc------
Confidence 457999986 999999987 6777421 11 259999997542 354310000
Q ss_pred CCCCCCCCCCCcccccccccccCcchHHHHHHHHHHhh
Q 024312 190 VNPTGDPDCFLWSNDQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 190 ~~~~~~~dC~~~~n~~~~~cy~c~gC~~~i~~~l~~~~ 227 (269)
.++..+...|. +||..++.+++++++
T Consensus 95 -----------~~~~~~~~iy~-~GC~~~l~~~~~~n~ 120 (120)
T cd03167 95 -----------DEDAAQRVVHL-GGCGPPLRRWLRGNL 120 (120)
T ss_pred -----------ccchhcccchh-ccCHHHHHHHHHhcC
Confidence 00000011233 799999999999874
No 11
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=98.34 E-value=5.4e-07 Score=68.71 Aligned_cols=68 Identities=13% Similarity=0.340 Sum_probs=45.3
Q ss_pred CccchHHHHHhhhcCCcccCcccCCCChhhhhhh---cCCccCcCccCCC-CCCCCcCCCCccccCCCCCCCCCCCCCcc
Q 024312 127 DSKNWNKIRACLADTDTCSKLSQQYVTADQFFSA---HISPLQSGCCKPP-TICGFSYVNPTLWLNPVNPTGDPDCFLWS 202 (269)
Q Consensus 127 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~---~~~~vp~sCC~~p-~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~ 202 (269)
.++.||.+|. .++|||.++ +.||... ...+||.|||..+ ..|+... .
T Consensus 28 ~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~vP~SCC~~~~~~C~~~~---------------------~ 78 (99)
T cd03166 28 FRKILDRMQK----DLKCCGANN----YTDWENIPSLDTDSVPDSCCINVTKGCGINF---------------------D 78 (99)
T ss_pred HHHHHHHHHH----HhcccCCCC----hhhhhcccCCCCCCCCcCccCcCCCCcccCC---------------------C
Confidence 3567999986 899999986 6788532 1246999999643 2453210 0
Q ss_pred cccccccccCcchHHHHHHHHHHhh
Q 024312 203 NDQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 203 n~~~~~cy~c~gC~~~i~~~l~~~~ 227 (269)
+ ..-|. +||..++.++++++.
T Consensus 79 ~---~~~y~-~GC~~~~~~~~~~~~ 99 (99)
T cd03166 79 E---KVIHL-EGCVTKIEGWLKKNI 99 (99)
T ss_pred c---cchHH-hcCHHHHHHHHHHhC
Confidence 0 01233 799999999999873
No 12
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=98.29 E-value=9.6e-07 Score=69.84 Aligned_cols=39 Identities=8% Similarity=0.139 Sum_probs=28.1
Q ss_pred CccchHHHHHhhhcCCcccCcccCCCChhhhhhh----------cCCccCcCccCCC
Q 024312 127 DSKNWNKIRACLADTDTCSKLSQQYVTADQFFSA----------HISPLQSGCCKPP 173 (269)
Q Consensus 127 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~----------~~~~vp~sCC~~p 173 (269)
.+..||.+|. .++|||.++ +.||... ...+||.|||++.
T Consensus 28 ~~~~~d~lQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~ 76 (119)
T cd03158 28 LQNIIDFVQK----EFKCCGGDD----YRDWSKNMYFNCSSPNPEACGVPYSCCIRA 76 (119)
T ss_pred HHHHHHHHHH----HccCCCCCC----hhhcccccccccCCCCCcCCCcCcCcccCC
Confidence 3677999886 899999986 6677421 0125999999754
No 13
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=98.27 E-value=8.8e-07 Score=67.25 Aligned_cols=66 Identities=14% Similarity=0.454 Sum_probs=44.6
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhh-cCCccCcCccCCC-CCCCCcCCCCccccCCCCCCCCCCCCCccccc
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSA-HISPLQSGCCKPP-TICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQ 205 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~-~~~~vp~sCC~~p-~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~ 205 (269)
++.||.+|. +++|||.++ +.||... ....+|.|||.+. ..|+.. .+
T Consensus 31 ~~~~d~~Q~----~l~CCG~~~----~~Dw~~~~~~~~vP~SCC~~~~~~C~~~----------------------~~-- 78 (98)
T cd03165 31 TNAWDITQT----EFRCCGVTN----YTDWYEVLGENRVPDSCCQEDSQDCGRN----------------------PT-- 78 (98)
T ss_pred HHHHHHHHH----hCcCcCCCC----hhHHHHhcCCCCCCHhhcCCCccccccC----------------------Cc--
Confidence 567999886 899999887 7888532 1246999999643 235210 00
Q ss_pred ccccccCcchHHHHHHHHHHhh
Q 024312 206 SQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 206 ~~~cy~c~gC~~~i~~~l~~~~ 227 (269)
..-|. +||..++.++++++.
T Consensus 79 -~~~~~-~GC~~~~~~~~~~~~ 98 (98)
T cd03165 79 -ELWWK-TGCYEKVQQWLVDNL 98 (98)
T ss_pred -cchHH-hhhHHHHHHHHHhcC
Confidence 01133 799999999999863
No 14
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=98.25 E-value=2.6e-06 Score=66.15 Aligned_cols=68 Identities=16% Similarity=0.362 Sum_probs=43.8
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhhc-CCccCcCccCCCC-CCCCcCCCCccccCCCCCCCCCCCCCccccc
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH-ISPLQSGCCKPPT-ICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQ 205 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~-~~~vp~sCC~~p~-~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~ 205 (269)
++.||.+|. .++|||.++ +.||.... ...||.|||.++. .|+-... .+..
T Consensus 32 ~~~~D~iQ~----~l~CCG~~~----~~DW~~~~~~~~vP~SCC~~~~~~C~~~~~--------------------~~~~ 83 (103)
T cd03157 32 THAWNSFQT----EFKCCGVIY----FTDWLEMTEMEWPPDSCCSNQYPGCARQAH--------------------YNDL 83 (103)
T ss_pred HHHHHHHHH----hccCccCCC----hhHHhccCCCCCCCccccCCCCCCcCcCCC--------------------Cccc
Confidence 557999986 899999987 77885321 1348999997543 4642100 0000
Q ss_pred ccccccCcchHHHHHHHHHH
Q 024312 206 SQLCYNCSSCKAGLLGNLRN 225 (269)
Q Consensus 206 ~~~cy~c~gC~~~i~~~l~~ 225 (269)
...|. +||..++.++++.
T Consensus 84 -~~iy~-~GC~~~i~~~l~~ 101 (103)
T cd03157 84 -SDLYQ-EGCGPKIYSFIRG 101 (103)
T ss_pred -ccccc-cchHHHHHHHHHh
Confidence 01243 7999999999875
No 15
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=98.16 E-value=2.8e-06 Score=65.94 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=44.4
Q ss_pred CccchHHHHHhhhcCCcccCcccCCCChhhhhhhc--------CCccCcCccCCCC-CCCCcCCCCccccCCCCCCCCCC
Q 024312 127 DSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH--------ISPLQSGCCKPPT-ICGFSYVNPTLWLNPVNPTGDPD 197 (269)
Q Consensus 127 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~--------~~~vp~sCC~~p~-~Cg~~~~n~t~w~~~~~~~~~~d 197 (269)
.+..||.+|. .++|||.++ +.||.... ...||.|||+... .|+..
T Consensus 31 ~~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~vP~SCC~~~~~~c~~~------------------ 84 (110)
T cd03155 31 LTLTVDELQQ----EFKCCGSNN----YTDWQDSEWINSNEANGRLVPDSCCKTVVDRCGCL------------------ 84 (110)
T ss_pred HHHHHHHHHH----hCcCcCCCC----hhhhhhccccccCCCCCCCCCccccCCCCCCcccc------------------
Confidence 3567999886 899999987 77885321 1369999997532 34310
Q ss_pred CCCcccccccccccC-cchHHHHHHHHHHhh
Q 024312 198 CFLWSNDQSQLCYNC-SSCKAGLLGNLRNEW 227 (269)
Q Consensus 198 C~~~~n~~~~~cy~c-~gC~~~i~~~l~~~~ 227 (269)
.-.+ . ..|.- +||..++.+++++++
T Consensus 85 --~~~~-~--~~~~~~~GC~~~~~~~~~~~~ 110 (110)
T cd03155 85 --RDHP-S--NIYKVEGGCIPKLEDFLYDHL 110 (110)
T ss_pred --cCCh-h--ccccccCChHHHHHHHHHHhC
Confidence 0000 0 01211 589999999999874
No 16
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=98.08 E-value=1.2e-06 Score=65.14 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=22.4
Q ss_pred cchHHHHHhhhcCCcccCcccCCCChhhhhhhcCCccCcCcc
Q 024312 129 KNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQSGCC 170 (269)
Q Consensus 129 ~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC 170 (269)
..||.+|+ +++|||.++ +.|| .+|+||+
T Consensus 32 ~~~d~iQ~----~l~CCG~~~----~~D~------~vP~SC~ 59 (84)
T cd03152 32 ETLKAIHF----ALDCCGPTG----GLEQ------FVTDTCP 59 (84)
T ss_pred HHHHHHHH----HHcCCCCCC----Cccc------ccCCCCC
Confidence 57999886 899999886 5677 3899983
No 17
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=98.06 E-value=6.9e-06 Score=60.67 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=43.1
Q ss_pred CccchHHHHHhhhcCCcccCcccCCCChhhhhhhcCCccCcCccCCCCCCCCcCCCCccccCCCCCCCCCCCCCcccccc
Q 024312 127 DSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQSGCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQS 206 (269)
Q Consensus 127 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~ 206 (269)
.+..||.+|. +++|||.++ +.||.. ....+|.|||++.. + .|. .+
T Consensus 28 ~~~~~d~iq~----~l~CCG~~~----~~D~~~-~~~~vP~SCc~~~~-~--------------------~~~--~~--- 72 (90)
T cd03127 28 FQEAMDALQS----TFECCGVNG----PTDYLD-LRLLVPSSCCKGTD-G--------------------NCG--LN--- 72 (90)
T ss_pred HHHHHHHHHH----hCcCcCCCC----hHHHcc-CCCCCCHhhcCCCC-C--------------------CCc--cc---
Confidence 4568999886 999999987 788853 23679999996432 1 011 00
Q ss_pred cccccCcchHHHHHHHHHHh
Q 024312 207 QLCYNCSSCKAGLLGNLRNE 226 (269)
Q Consensus 207 ~~cy~c~gC~~~i~~~l~~~ 226 (269)
-|. +||..++.++++++
T Consensus 73 --~~~-~GC~~~~~~~~~~~ 89 (90)
T cd03127 73 --LYT-EGCLEKLVDFLRSN 89 (90)
T ss_pred --hhh-HccHHHHHHHHHhh
Confidence 122 79999999999876
No 18
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=98.00 E-value=7.4e-06 Score=67.27 Aligned_cols=79 Identities=13% Similarity=0.288 Sum_probs=45.8
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhh-----h----------------------cCCccCcCccCCC--CCCCC
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFS-----A----------------------HISPLQSGCCKPP--TICGF 178 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~-----~----------------------~~~~vp~sCC~~p--~~Cg~ 178 (269)
++.||.+|. +++|||.++ +.||.. . ....||-|||.|. ..|..
T Consensus 34 ~~~~D~lQ~----~fkCCG~~~----y~DW~~~~w~~n~y~~~~~~~~~~~~~~~~~~~~~~~~vP~SCc~~~~~~~C~~ 105 (143)
T cd03162 34 KKTIDMLQI----EFQCCGNNG----YRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLTDGVPFSCCNPSSPRPCIQ 105 (143)
T ss_pred HHHHHHHHH----hccCCCCCC----hhhhhhhhhhcccccCCCccchhhhhhcccccccccCCcCCcccCCCCCCchhh
Confidence 467999876 899999886 556631 1 1247899999763 45765
Q ss_pred cCC-CCccccCCCCCCCCCCCCCcccccccccccCcchHHHHHHHHHHh
Q 024312 179 SYV-NPTLWLNPVNPTGDPDCFLWSNDQSQLCYNCSSCKAGLLGNLRNE 226 (269)
Q Consensus 179 ~~~-n~t~w~~~~~~~~~~dC~~~~n~~~~~cy~c~gC~~~i~~~l~~~ 226 (269)
... |.. .+. + ...+..+.-.|+ +||++++++|+.+.
T Consensus 106 ~~~~~~~-----a~~--~----~~~~~~~~~i~~-~GC~~~l~~~~~~~ 142 (143)
T cd03162 106 HQITDNS-----AHY--N----YDYQTEELNLWT-RGCREALLEYYTSK 142 (143)
T ss_pred hcccccc-----ccc--c----cccCcccccchH-HHHHHHHHHHHHhc
Confidence 211 100 000 0 000011111333 89999999998764
No 19
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=95.58 E-value=0.0052 Score=45.57 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=21.3
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhhcCCccCcCc
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQSGC 169 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sC 169 (269)
++.||.+|. +++|||.++ +.|... +.+|++|
T Consensus 31 ~~~~d~iQ~----~l~CCG~~~----~~d~~~---~~~~~~C 61 (84)
T cd03151 31 TAVLKTFHS----TLDCCGKGN----LTALLS---LLSTDLC 61 (84)
T ss_pred HHHHHHHHH----hcCCCCCCC----CcchHH---HHHhCCC
Confidence 346888876 999999886 333321 4567777
No 20
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=86.11 E-value=7.8 Score=33.32 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhh-hhHHHHHHHHHHHHHHhhhh
Q 024312 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLF-RWPVVLLGVLVLLVSLCGFI 61 (269)
Q Consensus 8 l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~-~~p~i~~G~~~~~vs~~Gc~ 61 (269)
+-++-.++.++|+.++.+|.......++.+.+.- ....-.+|+.++++|.++..
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence 3455566778888888888777766543333321 12245666666666655543
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.64 E-value=2.1 Score=36.21 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024312 10 VLNFIALLCSIPIIASGIWLA 30 (269)
Q Consensus 10 ~~N~l~~l~G~~ll~~Gi~~~ 30 (269)
+.+++..++|+++++.|+-.+
T Consensus 6 i~~i~~iilgilli~~gI~~L 26 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAAL 26 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666665555443
No 22
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=81.55 E-value=3.5 Score=32.59 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHH
Q 024312 10 VLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSL 57 (269)
Q Consensus 10 ~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~ 57 (269)
.+-++.+++|.+++.+|+.+....- +-...-.++++++|+++++=|+
T Consensus 45 ~la~~Lli~G~~li~~g~l~~~~~i-~~~~~~~~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 45 ALAVFLLIFGTVLIIIGLLLFFGHI-DGDRDRGWALLILGILCFIPGF 91 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CCCCcccchHHHHHHHHHhccH
Confidence 3445566788888888877766541 1112224577888888776554
No 23
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.09 E-value=7.7 Score=39.18 Aligned_cols=64 Identities=22% Similarity=0.477 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHH
Q 024312 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILI 82 (269)
Q Consensus 8 l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~ 82 (269)
+.+..+++.++|+++++-|+|+..-..+ +..++.|+.+++.+++= +|+++..|++|+.+++.-+
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~lggs-------~yy~iagl~~l~~~~ll----~~~k~aal~lya~~~~~t~ 66 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVALGGS-------WYYLIAGLVLLLSAWLL----LRRKRAALWLYALVLLGTL 66 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEeeCCc-------hHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHh
Confidence 3455677888999999999887765421 22467777777777764 5888899999988776544
No 24
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=72.85 E-value=1.1 Score=35.84 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHH
Q 024312 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIV 83 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i 83 (269)
+-.++|+..+.+|+.+...... .......| +-.|++.++.|.+|.....|.+++++..++++-++-++
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~-~~~~~~~p-iW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~ 72 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSS-VLVYIGYP-IWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSAL 72 (150)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHHHhccc-HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHH
Confidence 4457888888888877654321 01112234 45588888899999999999998888776665544443
No 25
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=69.51 E-value=12 Score=26.88 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC
Q 024312 11 LNFIALLCSIPIIASGIWLASKP 33 (269)
Q Consensus 11 ~N~l~~l~G~~ll~~Gi~~~~~~ 33 (269)
-|.+++++|++++.+|-++....
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~ 28 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGG 28 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCC
Confidence 48889999999999998877654
No 26
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=69.48 E-value=12 Score=31.57 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchh
Q 024312 45 VVLLGVLVLLVSLCGFIGAYWYKET 69 (269)
Q Consensus 45 ~i~~G~~~~~vs~~Gc~Ga~~es~~ 69 (269)
++..++++++++++-.....+..+.
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5777777888888888877766544
No 27
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=68.74 E-value=68 Score=27.52 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhH-HHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 024312 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWP-VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLL 86 (269)
Q Consensus 8 l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p-~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i~el 86 (269)
+++++++++++.++-++.++...++.. +......+- .-.++++..+ +|..|--|.+.-+|..|.+-.++.-++=+
T Consensus 40 l~~~h~ll~l~~~a~v~~~~L~~i~~~-~~p~p~~Wey~~~lS~ip~~---~G~~s~~rN~i~~l~~y~~~~~~~gl~pl 115 (186)
T PF07086_consen 40 LILFHALLWLLMAAKVSVDILLEISEL-QIPSPYQWEYIWCLSLIPSL---LGLLSLRRNNISLLRLYMIGSSLFGLLPL 115 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCChhHHHHHHHHHHHHHH---HHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 457788888888887777766555432 111111122 2333444444 44444456666667777665554434333
Q ss_pred HHHhh
Q 024312 87 VVLVF 91 (269)
Q Consensus 87 ~~~i~ 91 (269)
..+..
T Consensus 116 ~~g~~ 120 (186)
T PF07086_consen 116 IYGAM 120 (186)
T ss_pred HHHHH
Confidence 34333
No 28
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=68.25 E-value=35 Score=23.27 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhhhhhhccch
Q 024312 18 CSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKE 68 (269)
Q Consensus 18 ~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~~es~ 68 (269)
.|+..+.+|+++...++ .......+.+|..+++-|......+.++++
T Consensus 2 ~Gil~iv~Gi~~l~~p~----~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPD----ASLAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57888888988887542 112233588888888889888888888543
No 29
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=65.57 E-value=12 Score=36.05 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=28.7
Q ss_pred hHH-HHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHH
Q 024312 43 WPV-VLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIV 83 (269)
Q Consensus 43 ~p~-i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i 83 (269)
+|. +++=++.+++.+++++|..|+|||.+.+|.++=++.++
T Consensus 209 w~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~ 250 (418)
T cd07912 209 WLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALI 250 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 453 33333566888889999999999999988655444433
No 30
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=64.84 E-value=12 Score=36.61 Aligned_cols=43 Identities=30% Similarity=0.427 Sum_probs=32.8
Q ss_pred hhH-HHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHH
Q 024312 42 RWP-VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVL 84 (269)
Q Consensus 42 ~~p-~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i~ 84 (269)
.|| .+++=.+.+++-++++.|-.|+|||++..|.+.=++.+++
T Consensus 209 RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 209 RWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 355 4555567778889999999999999999988765555543
No 31
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=64.65 E-value=63 Score=28.04 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 024312 45 VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLL 86 (269)
Q Consensus 45 ~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i~el 86 (269)
-|.+=.+-.++-++|.+||..-++..+..|++-.++-+..-+
T Consensus 36 PIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNv 77 (200)
T PF05640_consen 36 PILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNV 77 (200)
T ss_pred HHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhH
Confidence 355555555566889999999999999999988777655443
No 32
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=63.91 E-value=53 Score=25.28 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024312 6 NITAVLNFIALLCSIPIIASGIWLASK 32 (269)
Q Consensus 6 ~~l~~~N~l~~l~G~~ll~~Gi~~~~~ 32 (269)
.+..+.+.+++++.++++++++|.+++
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~ 29 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVD 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999998876
No 33
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=61.87 E-value=16 Score=24.34 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q 024312 39 HLFRWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 39 ~~~~~p~i~~G~~~~~vs~~G 59 (269)
.....|.+.+|+++.+.+..+
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 455679999999888887765
No 34
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=55.56 E-value=70 Score=22.51 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHh
Q 024312 3 VSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLC 58 (269)
Q Consensus 3 ~~k~~l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~ 58 (269)
..|.+=-.+.++.+++|+..+.++.+.... ....+++|+.++++|++
T Consensus 6 ~fk~iW~~~DIi~Fila~i~i~it~F~~n~---------~~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 6 FFKTIWKYFDIILFILAMIFINITAFLINQ---------IAGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 345555577788888888888888776542 13357777777777655
No 35
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=55.06 E-value=1.2e+02 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 024312 4 SNNITAVLNFIALLCSIPIIASGIWLASKPD 34 (269)
Q Consensus 4 ~k~~l~~~N~l~~l~G~~ll~~Gi~~~~~~~ 34 (269)
.+-++-++-.++.++|..++.+|.......+
T Consensus 4 ~~~~~~il~~ill~lG~~f~ligaIGllRfP 34 (145)
T PRK12586 4 TKEIFSLIAAIMILLGSIIALISAIGIVKFQ 34 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566677788888888887777666654
No 36
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=53.01 E-value=47 Score=22.93 Aligned_cols=42 Identities=21% Similarity=0.461 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 024312 16 LLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAY 64 (269)
Q Consensus 16 ~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~ 64 (269)
.++|++++..|+....... .+.+..+|+.+++-++.|.|...
T Consensus 14 ~~~G~~l~~~~~~~~~~~~-------~~~~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 14 IIIGIVLLALGLLGLFGSW-------GWLLGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHHHHHHCcCHhH
Confidence 3455555555544332210 23356677777777777766543
No 37
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=52.31 E-value=53 Score=28.14 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhhhhhhccch
Q 024312 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKE 68 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~~es~ 68 (269)
.+.+.|++++.+|++...... .+ .......+|+++++.|.+=..+|..+++
T Consensus 21 ~~l~~Gv~lii~Gl~~l~~P~---~s-~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 21 WVLLLGVLLIILGLLALFNPA---IS-TVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356889999999999887431 11 1223577888888888877777776655
No 38
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=52.04 E-value=24 Score=27.16 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=24.9
Q ss_pred HhhHHHHHHHHHHHHHHH-HHHHHHHhhhhhhchhhhhcccc
Q 024312 225 NEWRKANIILIVAVVILI-WVYLIACSAFKNAQTEDLFRRYK 265 (269)
Q Consensus 225 ~~~~~v~~v~i~i~~~~i-~~~~~ac~l~~~~~~~~~~~~~~ 265 (269)
+.|..+.+|.++++++-+ +.+++=|.+.++....+.++|..
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~ 56 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLP 56 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCC
Confidence 346666666666655544 44455588887777666555543
No 39
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=49.37 E-value=8.7 Score=30.44 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 024312 45 VVLLGVLVLL 54 (269)
Q Consensus 45 ~i~~G~~~~~ 54 (269)
++++|+++|+
T Consensus 87 f~V~G~L~Fi 96 (124)
T KOG4753|consen 87 FFVLGILLFI 96 (124)
T ss_pred EehhhhHhcc
Confidence 4444444443
No 40
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=49.10 E-value=45 Score=27.99 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcchh-hhhhHHHHHHHHHHHHHHhhh
Q 024312 11 LNFIALLCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 11 ~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~-~~~~p~i~~G~~~~~vs~~Gc 60 (269)
.|++..++..+++++|+|+..+.+ ..+ .+...++.-|+.+++++.=+-
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~rn--Lir~iiGl~il~~~vnLlii~~G~~ 51 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLERS--LTRMLLGLLLIGNGVNLLILTAGGP 51 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777888888999999887542 222 233346777777777665543
No 41
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.83 E-value=1.7e+02 Score=24.85 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 024312 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLV 87 (269)
Q Consensus 8 l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i~el~ 87 (269)
++++.++.|+++++-+++|---....+ +...-+.+.-.-.+ -++-|++|..+.-|.+...|..|.+-+++..+.-+.
T Consensus 40 lifvh~lI~v~mlak~~l~hl~~~k~d-~v~~py~wey~~~~--SllpslLgllsf~rnkv~~L~l~m~a~~lf~i~p~~ 116 (183)
T KOG4054|consen 40 LIFVHALIWVLMLAKMSLGHLRLLKHD-QVPMPYQWEYVWAL--SLLPSLLGLLSFRRNKVSYLVLYMIAMGLFMIFPLV 116 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcc-cCCCchhHHHHHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888886643222221 11111222222222 234667777777777777888888887777755444
Q ss_pred HH
Q 024312 88 VL 89 (269)
Q Consensus 88 ~~ 89 (269)
.+
T Consensus 117 ~~ 118 (183)
T KOG4054|consen 117 YG 118 (183)
T ss_pred Hh
Confidence 43
No 42
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=48.35 E-value=1.7e+02 Score=24.82 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHhhhh-hhhcc
Q 024312 42 RWPVVLLGVLVLLVSLCGFI-GAYWY 66 (269)
Q Consensus 42 ~~p~i~~G~~~~~vs~~Gc~-Ga~~e 66 (269)
.-|+++.|+..+.-+.+|.. |..-.
T Consensus 74 lDP~~~~g~~t~a~g~lG~L~GP~~G 99 (173)
T PF08566_consen 74 LDPFMVYGLATLACGALGWLVGPSLG 99 (173)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcchHH
Confidence 35799999999998888873 44333
No 43
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=46.75 E-value=1.2e+02 Score=26.31 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhccCC----Ccch---hh--hhhHHHHHHHHHHHHHHhhhhhhhc
Q 024312 14 IALLCSIPIIASGIWLASKPD----NECI---HL--FRWPVVLLGVLVLLVSLCGFIGAYW 65 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~----~~~~---~~--~~~p~i~~G~~~~~vs~~Gc~Ga~~ 65 (269)
+..++|++..++|+....+.. -|.+ +. .+.++.+-|..+++.++.|......
T Consensus 4 ~~~v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~ 64 (196)
T PF06770_consen 4 ILFVVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITS 64 (196)
T ss_pred hhHHHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344588888888887665542 1222 11 1344788999999988888866664
No 44
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=44.38 E-value=1.7e+02 Score=23.55 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Q 024312 10 VLNFIALLCSIPIIASGIWLASKP 33 (269)
Q Consensus 10 ~~N~l~~l~G~~ll~~Gi~~~~~~ 33 (269)
.++.++..+|.++++.|+-..+..
T Consensus 31 ~~~~~l~~lGall~~~gii~fvA~ 54 (145)
T PF09925_consen 31 WLARILLYLGALLLGLGIILFVAA 54 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999998777654
No 45
>PF15050 SCIMP: SCIMP protein
Probab=41.96 E-value=46 Score=26.51 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=16.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024312 221 GNLRNEWRKANIILIVAVVILIWVYLIA 248 (269)
Q Consensus 221 ~~l~~~~~~v~~v~i~i~~~~i~~~~~a 248 (269)
+|.++|.+++-.|+|++ +-..+|+++=
T Consensus 2 ~WWr~nFWiiLAVaII~-vS~~lglIly 28 (133)
T PF15050_consen 2 SWWRDNFWIILAVAIIL-VSVVLGLILY 28 (133)
T ss_pred chHHhchHHHHHHHHHH-HHHHHHHHHH
Confidence 57888888887777444 3344444443
No 46
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.34 E-value=59 Score=20.53 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024312 229 KANIILIVAVVILIWVYLIACSAF 252 (269)
Q Consensus 229 ~v~~v~i~i~~~~i~~~~~ac~l~ 252 (269)
++++|..+++++-+..+..+||.-
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 47
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=40.03 E-value=1.2e+02 Score=23.73 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcchhhh-hhHHHHHHHHHHHHHHhhhhh
Q 024312 12 NFIALLCSIPIIASGIWLASKPDNECIHLF-RWPVVLLGVLVLLVSLCGFIG 62 (269)
Q Consensus 12 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~-~~p~i~~G~~~~~vs~~Gc~G 62 (269)
|++..+++.++.++|+|...++ +..+.+ ..-++.-|+.++++++-+.-|
T Consensus 2 ~~~~~~~~~~Lf~iGiy~il~r--nli~~ligl~im~~avnL~~v~~g~~~~ 51 (114)
T PRK12660 2 NLILLLVIGFLVFIGTYMILSI--NLIRIVIGISIYTHAGNLIIMSMGGYGS 51 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5667788888999999987533 222222 233677777777777665543
No 48
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=39.67 E-value=20 Score=24.93 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhh
Q 024312 45 VVLLGVLVLLVSLCG 59 (269)
Q Consensus 45 ~i~~G~~~~~vs~~G 59 (269)
.++.|++..++|+++
T Consensus 44 ~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 44 YLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHhHHHHHHHHHhh
Confidence 688888888888764
No 49
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=39.27 E-value=9.9 Score=34.89 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhch
Q 024312 227 WRKANIILIVAVVILIWVYLIACSAFKNAQT 257 (269)
Q Consensus 227 ~~~v~~v~i~i~~~~i~~~~~ac~l~~~~~~ 257 (269)
+...-+.+++|++++++..+++|+.+|..|.
T Consensus 145 yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~ 175 (290)
T PF05454_consen 145 YLHTFIPAVVIAAILLIAGIIACICYRRKRK 175 (290)
T ss_dssp -------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4444467777888888888889988885443
No 50
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=37.25 E-value=12 Score=35.99 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhhhccchhhHHHHHHHHHHHH
Q 024312 50 VLVLLVSLCGFIGAYWYKETLLAFYLCVMAILI 82 (269)
Q Consensus 50 ~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~ 82 (269)
++.+++-+++++|..|+|||++..+.++-++.+
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll~l 226 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLLAL 226 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHHHH
Confidence 456677888999999999999877665444433
No 51
>PRK02935 hypothetical protein; Provisional
Probab=36.87 E-value=1.5e+02 Score=23.06 Aligned_cols=29 Identities=10% Similarity=0.470 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHH
Q 024312 43 WPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLC 76 (269)
Q Consensus 43 ~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~ 76 (269)
..++.+|.+++-+|++ +|++..+..+|.+
T Consensus 17 L~lvfiG~~vMy~Gif-----f~~~~~~m~ifm~ 45 (110)
T PRK02935 17 LSLVFIGFIVMYLGIF-----FRESIIIMTIFML 45 (110)
T ss_pred HHHHHHHHHHHHHHHH-----hcccHHHHHHHHH
Confidence 3478888888888865 4777776655544
No 52
>PF15125 TMEM238: TMEM238 protein family
Probab=36.80 E-value=1.5e+02 Score=20.99 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhh
Q 024312 9 AVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 9 ~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc 60 (269)
+.+-++|=+.|++++-+|+..-... -+ -++=.|.+++++|+++.
T Consensus 7 f~laV~fD~vGl~~Ll~GiFa~l~f----~D----~lvY~GaliiflSL~~W 50 (65)
T PF15125_consen 7 FWLAVVFDVVGLVMLLTGIFAPLDF----YD----FLVYTGALIIFLSLLWW 50 (65)
T ss_pred hHHHHHHHHhhHHHHHHHHhcchhH----HH----HHHHHhHHHHHHHHHHH
Confidence 3455667777888777777654421 12 24566777777776654
No 53
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=36.32 E-value=51 Score=31.60 Aligned_cols=16 Identities=19% Similarity=0.698 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 024312 45 VVLLGVLVLLVSLCGF 60 (269)
Q Consensus 45 ~i~~G~~~~~vs~~Gc 60 (269)
++++|++++++++++.
T Consensus 400 ~~~~~~i~~i~~~~~~ 415 (511)
T PF09972_consen 400 LIILGIILLILGFILL 415 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666655
No 54
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=35.81 E-value=80 Score=19.93 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 024312 229 KANIILIVAVVILIWVYLIACSAFKNAQTED 259 (269)
Q Consensus 229 ~v~~v~i~i~~~~i~~~~~ac~l~~~~~~~~ 259 (269)
.+++++-+++.+.++.+.+-|...+..|.+.
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 5788888888888888888788887655443
No 55
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=35.59 E-value=3.2e+02 Score=25.30 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 024312 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWY 66 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~~e 66 (269)
=+..+.|+.++++|+=...+.+.+-........+..|..+++++....--..++
T Consensus 256 Hl~l~~givl~~~gl~~~v~~~~~~~~~~~~~~~~~g~alfll~~~~~~~~~~~ 309 (354)
T PF06772_consen 256 HLPLVAGIVLIAVGLELVVEHPVAHSSPRWALALLGGVALFLLGLWLFRRRNKR 309 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356688999999998777655322111111224577778887777666544443
No 56
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=35.51 E-value=20 Score=36.28 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhchh
Q 024312 226 EWRKANIILIVAVVILIWVYLIACSAFKNAQTE 258 (269)
Q Consensus 226 ~~~~v~~v~i~i~~~~i~~~~~ac~l~~~~~~~ 258 (269)
|.|++.+|.+.++++.++++++.|++-|..|.+
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~e 300 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLE 300 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHhcccccC
Confidence 355555556888888888888888888876643
No 57
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=33.95 E-value=1.2e+02 Score=23.48 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhh
Q 024312 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 12 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~G 59 (269)
++++.+...+++++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~~n-lir~iigl~i~~~~vnL~~v~~g~ 48 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLSRS-VVRVVLGLALLGYAVNLFILTMGG 48 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777888899999877542 111222333667777666666544
No 58
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=33.91 E-value=1.4e+02 Score=23.47 Aligned_cols=29 Identities=7% Similarity=0.502 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHH
Q 024312 43 WPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLC 76 (269)
Q Consensus 43 ~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~ 76 (269)
..++.+|.+++.+|++ ++.++.+..+|++
T Consensus 16 l~lif~g~~vmy~gi~-----f~~~~~im~ifml 44 (114)
T PF11023_consen 16 LSLIFIGMIVMYIGIF-----FKASPIIMVIFML 44 (114)
T ss_pred HHHHHHHHHHHhhhhh-----hcccHHHHHHHHH
Confidence 3478888888887754 4666655544433
No 59
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=33.73 E-value=79 Score=23.76 Aligned_cols=34 Identities=15% Similarity=0.446 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHH
Q 024312 214 SCKAGLLGNLRNE-------WRKANIILIVAVVILIWVYLI 247 (269)
Q Consensus 214 gC~~~i~~~l~~~-------~~~v~~v~i~i~~~~i~~~~~ 247 (269)
+|--.+.++=|++ |+.+.+++.++.++.++|+++
T Consensus 25 ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~vl~lGili 65 (91)
T PHA02680 25 ACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFV 65 (91)
T ss_pred HHHHhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555533 999999999999988888543
No 60
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=33.71 E-value=92 Score=25.69 Aligned_cols=41 Identities=10% Similarity=0.290 Sum_probs=24.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh
Q 024312 221 GNLRNEWRKANIILIVAVVILIWVYLIACSAFKNAQTEDLF 261 (269)
Q Consensus 221 ~~l~~~~~~v~~v~i~i~~~~i~~~~~ac~l~~~~~~~~~~ 261 (269)
+++.++...-..+.++++++.++.++++.-.+-+.|.+.++
T Consensus 6 ~Yl~~q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKy 46 (149)
T PF11694_consen 6 DYLQSQQSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKY 46 (149)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 56666666666677777666666666655444444545434
No 61
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=33.62 E-value=2.1e+02 Score=25.72 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhhh
Q 024312 50 VLVLLVSLCGFIG 62 (269)
Q Consensus 50 ~~~~~vs~~Gc~G 62 (269)
++.|+.+++|.+|
T Consensus 32 ~~~F~~~ml~~~G 44 (284)
T PF12805_consen 32 LLTFFFGMLGVYG 44 (284)
T ss_pred HHHHHHHHHHHHh
Confidence 3333344444333
No 62
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.58 E-value=1.5e+02 Score=24.83 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhh
Q 024312 45 VVLLGVLVLLVSLCG 59 (269)
Q Consensus 45 ~i~~G~~~~~vs~~G 59 (269)
.+++|+++++.|..+
T Consensus 11 ~iilgilli~~gI~~ 25 (191)
T PF04156_consen 11 LIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555544444444
No 63
>PF05374 Mu-conotoxin: Mu-Conotoxin; InterPro: IPR008036 This entry represents Mu-type conotoxins. Cone snail toxins, conotoxins, are small peptides with disulphide connectivity, that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cystine knot scaffold. The knottin scaffold is a very special disulphide through disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network as well as specific amino acids in inter-cysteine loops provide specificity of conotoxin []. The cysteine arrangement is the same for omega, delta and kappa families, but omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangement, but the knottin scaffold is not observed. Conotoxin gm9a, a putative 27-residue polypeptide encoded by Conus gloriamaris, has been shown to adopt an inhibitory cystine knot motif constrained by three disulphide bonds [, ].Mu conotoxins target the voltage-gated sodium channels, preferential skeletal muscle [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangement [] and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1R9I_A 1GIB_A 1TCJ_A 1TCG_A 1TCK_A 1TCH_A.
Probab=32.38 E-value=22 Score=19.48 Aligned_cols=8 Identities=63% Similarity=1.950 Sum_probs=6.9
Q ss_pred ccCCCCCC
Q 024312 169 CCKPPTIC 176 (269)
Q Consensus 169 CC~~p~~C 176 (269)
||++|.+|
T Consensus 3 CC~~Pk~C 10 (22)
T PF05374_consen 3 CCGPPKSC 10 (22)
T ss_dssp SSSSSTGG
T ss_pred ccCCCccc
Confidence 88888887
No 64
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=31.48 E-value=2.2e+02 Score=23.06 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhccC
Q 024312 15 ALLCSIPIIASGIWLASKP 33 (269)
Q Consensus 15 ~~l~G~~ll~~Gi~~~~~~ 33 (269)
..+.|..++-+|+.-..+.
T Consensus 2 l~ivG~IL~Lial~~is~~ 20 (139)
T PF06195_consen 2 LSIVGLILLLIALKEISDA 20 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999998876653
No 65
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=31.35 E-value=2.7e+02 Score=22.16 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHH--Hhhhhh
Q 024312 17 LCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVS--LCGFIG 62 (269)
Q Consensus 17 l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs--~~Gc~G 62 (269)
.+|++++.+|+-....++.....-+....+++|++.+++. +.|.|.
T Consensus 43 ~ig~vi~~~~li~~~~k~~~~~~gl~i~~i~~gil~~lip~~lIG~C~ 90 (124)
T PF14387_consen 43 GIGAVIAVLSLIMLFVKNKKARIGLSIANIALGILVILIPTVLIGVCM 90 (124)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 4555555555554443322222222333566666666555 555553
No 66
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=31.09 E-value=66 Score=24.29 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 024312 226 EWRKANIILIVAVVILIWVYLIA 248 (269)
Q Consensus 226 ~~~~v~~v~i~i~~~~i~~~~~a 248 (269)
-|+.+.+++.++.++.++|+++-
T Consensus 43 ~wRalSii~FI~giil~lG~~i~ 65 (92)
T PF05767_consen 43 TWRALSIICFILGIILTLGIVIF 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999998875
No 67
>PHA02898 virion envelope protein; Provisional
Probab=30.96 E-value=56 Score=24.56 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 024312 226 EWRKANIILIVAVVILIWVYLIA 248 (269)
Q Consensus 226 ~~~~v~~v~i~i~~~~i~~~~~a 248 (269)
-|+.+.+++.++.++.++|+++-
T Consensus 43 ~wRalSii~FIlgivl~lG~~if 65 (92)
T PHA02898 43 ALRSISIISFILAIILILGIIFF 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999998775
No 68
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=30.85 E-value=63 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhhhhhhchhh
Q 024312 227 WRKANIILIVAVVI-LIWVYLIACSAFKNAQTED 259 (269)
Q Consensus 227 ~~~v~~v~i~i~~~-~i~~~~~ac~l~~~~~~~~ 259 (269)
+.++++++++++++ -++...+....||..+++.
T Consensus 4 l~i~~iialiv~~iiaIvvW~iv~ieYrk~~rqr 37 (81)
T PF00558_consen 4 LEILAIIALIVALIIAIVVWTIVYIEYRKIKRQR 37 (81)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777444 4455555567777666554
No 69
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=30.07 E-value=3.6e+02 Score=27.03 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 024312 10 VLNFIALLCSIPIIASGIWL 29 (269)
Q Consensus 10 ~~N~l~~l~G~~ll~~Gi~~ 29 (269)
+.+++..+++.+.+.+-+++
T Consensus 400 fi~Li~tiI~P~ti~~iIyl 419 (527)
T PF03142_consen 400 FIDLIGTIILPATIVFIIYL 419 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444444443
No 70
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=29.46 E-value=1.2e+02 Score=23.83 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhh
Q 024312 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc 60 (269)
.+..++..+++++|+|+..+++ -........++.-|+.+++++.-+.
T Consensus 3 ~~~~~~~~~L~~~G~ylll~rn-lik~iigl~i~~~~v~L~~v~~g~~ 49 (113)
T PRK08600 3 ILMIIVIGILTAIAVYLILSKS-LLRIIIGTTLLSHGANLLLLTMGGL 49 (113)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666777889999877542 1222233346777777776665543
No 71
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=29.04 E-value=1.5e+02 Score=23.35 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhh
Q 024312 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 12 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc 60 (269)
|++..++..+++++|+|...+++ -........++.-|+.++++++-..
T Consensus 2 ~~~~~~~~~~Lf~iG~y~il~rn-li~~ligl~im~~avnL~~v~~g~~ 49 (117)
T PRK12659 2 EFLLAIVVGGLYAAGIYMMLRRS-IVKLVIGLILLGNAANLLIFTVGRL 49 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666777888899999886442 1112223336667776666666543
No 72
>PRK10209 acid-resistance membrane protein; Provisional
Probab=28.91 E-value=2.9e+02 Score=23.38 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 024312 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWY 66 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~Gc~Ga~~e 66 (269)
.+.+.|++.+.+|+.....+.. . .....+.+|+++++-|+....++.+.
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~---~-~~~~~~~~g~~ll~~Gi~~l~~~~~~ 71 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFV---S-GDALSTVVGILLICSGIALIVGLFAN 71 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567899999999988875421 1 11223668888888888877766543
No 73
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=28.47 E-value=1.3e+02 Score=26.91 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhcc
Q 024312 41 FRWPVVLLGVLVLLVSLCGFIGAYWY 66 (269)
Q Consensus 41 ~~~p~i~~G~~~~~vs~~Gc~Ga~~e 66 (269)
+.+.++++|.++++.++++.+=..|-
T Consensus 225 Lwwi~~vlG~ll~lr~~i~YikVrrm 250 (262)
T KOG4812|consen 225 LWWIFLVLGLLLFLRGFINYIKVRRM 250 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhH
Confidence 34458999999999999997655443
No 74
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=28.45 E-value=69 Score=32.83 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=23.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024312 218 GLLGNLRNEWRKANIILIVAVVILIWVYLI 247 (269)
Q Consensus 218 ~i~~~l~~~~~~v~~v~i~i~~~~i~~~~~ 247 (269)
.+.+|+..+|+.+++++++++++.++-+=+
T Consensus 674 ~~~~w~~~~w~~v~i~gi~~i~~m~~fik~ 703 (764)
T KOG3658|consen 674 TFAEWIVLNWLAVNIVGIVLIVLMAFFIKI 703 (764)
T ss_pred hhHHHHHhhhHHhHhHHHHHHHHHHHhhhh
Confidence 456788899999999999988877654433
No 75
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=28.37 E-value=77 Score=25.40 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 024312 5 NNITAVLNFIALLCSIPIIASGIW 28 (269)
Q Consensus 5 k~~l~~~N~l~~l~G~~ll~~Gi~ 28 (269)
||.+..+.++..++|+.+|+.+|-
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~ 59 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQ 59 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhH
Confidence 445555555555555555555543
No 76
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=28.25 E-value=2.2e+02 Score=20.65 Aligned_cols=15 Identities=7% Similarity=0.503 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHh
Q 024312 14 IALLCSIPIIASGIW 28 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~ 28 (269)
+..++|++++..|+.
T Consensus 47 ~~~v~gl~llv~G~~ 61 (82)
T PF11239_consen 47 LLVVVGLALLVAGVV 61 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 77
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=26.96 E-value=4.1e+02 Score=22.87 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhccCC--CcchhhhhhHHHHHHHHHHHHHHhhh
Q 024312 14 IALLCSIPIIASGIWLASKPD--NECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~--~~~~~~~~~p~i~~G~~~~~vs~~Gc 60 (269)
.|..+|+..+..|.|+..+-+ .+++-.+..|....|++++..++.=.
T Consensus 44 ~f~~lG~~~litGl~~~~TWPLPgsYNIlFgd~~~lfGv~lL~~~~~l~ 92 (191)
T PF06168_consen 44 FFGALGLFALITGLWGTFTWPLPGSYNILFGDPWLLFGVLLLSAGLALY 92 (191)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCcccchHhhhHHHHHHHHHHHHHHHH
Confidence 455788888888888877642 23333445666777777777776643
No 78
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=26.93 E-value=1.1e+02 Score=24.50 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhh
Q 024312 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 12 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~G 59 (269)
+++..+...++.++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~rn-lir~iigl~il~~avnLlii~~g~ 48 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSRH-IIRILFGLALLGNAVNLLIFTAGR 48 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45566777888899999887542 112222334677777777666544
No 79
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=26.85 E-value=2.8e+02 Score=26.29 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhheeecC
Q 024312 70 LLAFYLCVMAILIVLLLVVLVFAFVVTRP 98 (269)
Q Consensus 70 lL~~y~~~l~~l~i~el~~~i~~~~~~~~ 98 (269)
.+....+++.+.++.. .|....+.++.
T Consensus 217 ~~ki~~ifl~v~lLfn--sG~i~~i~~d~ 243 (367)
T PF09971_consen 217 SFKILSIFLAVFLLFN--SGFIYEIFGDP 243 (367)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHhcCC
Confidence 3444455555555555 55555555444
No 80
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=26.16 E-value=2.9e+02 Score=20.84 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhccCCCcchh-hhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhhe
Q 024312 17 LCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFV 94 (269)
Q Consensus 17 l~G~~ll~~Gi~~~~~~~~~~~~-~~~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i~el~~~i~~~~ 94 (269)
+++.++..+|++...... ..-. ....-++..|+.++++++....+..-... ..+..+..++-..|.+.+....+
T Consensus 8 ~~~~~lf~iGl~g~l~~r-nll~~LlslE~m~~~v~l~~~~~~~~~~~~~~~~---~~l~l~~ivia~~E~algLsllv 82 (101)
T CHL00015 8 ILSAYLFSIGIYGLITSR-NMVRALMCLELILNAVNINFVTFSDFFDSRQLKG---DIFSIFVIAIAAAEAAIGLAIVS 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888766431 1111 12233678888877777766544321011 22333344445568776655444
No 81
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=26.13 E-value=68 Score=19.76 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc
Q 024312 45 VVLLGVLVLLVSLCGFIGAYWY 66 (269)
Q Consensus 45 ~i~~G~~~~~vs~~Gc~Ga~~e 66 (269)
-+++|++++++++-|.....++
T Consensus 12 Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 12 GLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4788888888888888766543
No 82
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=26.05 E-value=2.8e+02 Score=20.70 Aligned_cols=73 Identities=10% Similarity=0.117 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhccCCCcchhh-hhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhhe
Q 024312 16 LLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFV 94 (269)
Q Consensus 16 ~l~G~~ll~~Gi~~~~~~~~~~~~~-~~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i~el~~~i~~~~ 94 (269)
.+++.+++.+|+|....+ .+.-.. ...-++..|+.+++++.....+ + ..=..+.....++-..|.+.+....+
T Consensus 8 ~~~~~~lf~iGl~~~~~~-~~li~~Ll~lE~m~~~v~l~~~~~~~~~~----~-~~~~~l~l~~ivi~~~E~algLsllv 81 (100)
T PRK05715 8 LILAAILFCIGLVGLLLR-RNAIVVLMSIELMLNAVNLNFVAFSSYLG----D-LDGQVFAFFVITVAAAEAAIGLAILL 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888876542 121121 2233677777776666554432 1 11123333444445567777655444
No 83
>COG2245 Predicted membrane protein [Function unknown]
Probab=25.60 E-value=4.2e+02 Score=22.55 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 024312 14 IALLCSIPIIASGIWLASKP 33 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~ 33 (269)
++-+.|..++-+|++...+.
T Consensus 29 ilSlVG~VLvlval~~iS~~ 48 (182)
T COG2245 29 ILSLVGLVLVLVALYMISKQ 48 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999987664
No 84
>PF13630 SdpI: SdpI/YhfL protein family
Probab=24.80 E-value=2.4e+02 Score=19.50 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 024312 42 RWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 42 ~~p~i~~G~~~~~vs~~G 59 (269)
....+..|+++++++++.
T Consensus 31 g~~~~~~Gi~~~~~~~~~ 48 (76)
T PF13630_consen 31 GKIFIIGGIVLLIIGIII 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334788888888887773
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.41 E-value=1.2e+02 Score=24.14 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=3.7
Q ss_pred HHHhhhhhhch
Q 024312 247 IACSAFKNAQT 257 (269)
Q Consensus 247 ~ac~l~~~~~~ 257 (269)
++++..|..|+
T Consensus 84 i~y~irR~~Kk 94 (122)
T PF01102_consen 84 ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHS--
T ss_pred HHHHHHHHhcc
Confidence 33344444343
No 86
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.96 E-value=3.5e+02 Score=21.04 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcchh-hhhhHHHHHHHHHHHHHHhhhhh
Q 024312 14 IALLCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGFIG 62 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~-~~~~p~i~~G~~~~~vs~~Gc~G 62 (269)
.+.+++++++++|+|....+. +..+ ....-++.-|+.++++++-...|
T Consensus 4 ~~~~~~~~Lf~iGlygil~rr-nli~~liglei~~~av~L~lv~~g~~~~ 52 (114)
T PRK08389 4 AYYFGAIALVLIGLYGVLVKK-NLLKIIIGLDIMETGVNLLLISIGYVSG 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 356778888999999765332 2222 22334788888888888765544
No 87
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=23.84 E-value=75 Score=22.44 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=15.7
Q ss_pred HHHHHHHH---HHHHHHHHHHHh
Q 024312 9 AVLNFIAL---LCSIPIIASGIW 28 (269)
Q Consensus 9 ~~~N~l~~---l~G~~ll~~Gi~ 28 (269)
..+|++++ +.|++++++|--
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigPA 24 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGPA 24 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888 888888887753
No 88
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=23.81 E-value=1.6e+02 Score=22.12 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024312 5 NNITAVLNFIALLCSIPIIASGIWLASK 32 (269)
Q Consensus 5 k~~l~~~N~l~~l~G~~ll~~Gi~~~~~ 32 (269)
-.+++++.-+.++++.+++..|......
T Consensus 37 a~~~~v~SWi~f~ia~~~ll~ga~~n~~ 64 (97)
T PF06749_consen 37 AVVFFVLSWIVFIIAEALLLAGASMNAR 64 (97)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567788888888999999999876544
No 89
>PTZ00370 STEVOR; Provisional
Probab=23.75 E-value=1e+02 Score=28.31 Aligned_cols=13 Identities=0% Similarity=-0.082 Sum_probs=8.8
Q ss_pred Hhhhhhhchhhhh
Q 024312 249 CSAFKNAQTEDLF 261 (269)
Q Consensus 249 c~l~~~~~~~~~~ 261 (269)
..++|+.++.+++
T Consensus 276 iwlyrrRK~swkh 288 (296)
T PTZ00370 276 IWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHhhcchhHH
Confidence 4788876666644
No 90
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.67 E-value=98 Score=28.39 Aligned_cols=13 Identities=0% Similarity=-0.092 Sum_probs=8.1
Q ss_pred Hhhhhhhchhhhh
Q 024312 249 CSAFKNAQTEDLF 261 (269)
Q Consensus 249 c~l~~~~~~~~~~ 261 (269)
..|+|+.++.+++
T Consensus 280 iWlyrrRK~swkh 292 (295)
T TIGR01478 280 IWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHhhcccccc
Confidence 4788766665543
No 91
>PF15471 TMEM171: Transmembrane protein family 171
Probab=23.67 E-value=76 Score=28.92 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC-Ccchhhh--hhH---HHHHHHHHHH
Q 024312 7 ITAVLNFIALLCSIPIIASGIWLASKPD-NECIHLF--RWP---VVLLGVLVLL 54 (269)
Q Consensus 7 ~l~~~N~l~~l~G~~ll~~Gi~~~~~~~-~~~~~~~--~~p---~i~~G~~~~~ 54 (269)
+||+|-.+.+-.|+++-.+|.+.-.... .+|..++ ..| .+++|.+++.
T Consensus 23 FLfvFGavllCvG~lLsIfgfqaC~ye~l~dCs~vLKi~GP~cAvvGLg~ViLA 76 (319)
T PF15471_consen 23 FLFVFGAVLLCVGVLLSIFGFQACQYETLSDCSMVLKIAGPSCAVVGLGAVILA 76 (319)
T ss_pred hhHHHhHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhccchhhhhcchhheeh
Confidence 4444444444455555555544322221 2344333 234 3555555544
No 92
>COG3374 Predicted membrane protein [Function unknown]
Probab=23.61 E-value=1.7e+02 Score=25.33 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 024312 41 FRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 41 ~~~p~i~~G~~~~~vs~~Gc 60 (269)
...|.+++|+++++.|+-|-
T Consensus 43 ~~~p~~~lG~~~~itGl~g~ 62 (197)
T COG3374 43 FAAPAAGLGIFILITGLWGE 62 (197)
T ss_pred ccchHHHHHHHHHHHHHHhh
Confidence 34566777777777666654
No 93
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=23.60 E-value=3.5e+02 Score=20.86 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhh-hhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHh--h
Q 024312 15 ALLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLV--F 91 (269)
Q Consensus 15 ~~l~G~~ll~~Gi~~~~~~~~~~~~~-~~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i~el~~~i--~ 91 (269)
..++++++..+|++-...+. ..... .+.-++.-.+-+-++++--..|..... .|.++...+-..|.++|. +
T Consensus 7 ~l~laa~LF~IGl~Gv~~rr-N~i~~LmSiElmlNAvnl~~Va~~~y~~~~~gQ-----vfaifvitvAAaE~aVGLail 80 (100)
T COG0713 7 YLILAALLFTIGLYGLLTRR-NLIVMLMSIELMLNAVNLNFVAFSSYLGDLDGQ-----VFAIFVITVAAAEAAVGLAIL 80 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888665431 11111 123345555555556665555554443 466666666777876654 4
Q ss_pred hheeecC
Q 024312 92 AFVVTRP 98 (269)
Q Consensus 92 ~~~~~~~ 98 (269)
...||++
T Consensus 81 v~~yR~~ 87 (100)
T COG0713 81 VALYRRR 87 (100)
T ss_pred HHHHHcc
Confidence 4445554
No 94
>COG2149 Predicted membrane protein [Function unknown]
Probab=23.60 E-value=2.5e+02 Score=22.29 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 024312 45 VVLLGVLVLLVSL 57 (269)
Q Consensus 45 ~i~~G~~~~~vs~ 57 (269)
+|.+|+++...|.
T Consensus 63 ii~~gil~~a~g~ 75 (120)
T COG2149 63 LILVGILLAALGA 75 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 95
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=23.08 E-value=2.8e+02 Score=22.02 Aligned_cols=29 Identities=34% Similarity=0.561 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHh-hhhhhhccchhhHHH
Q 024312 45 VVLLGVLVLLVSLC-GFIGAYWYKETLLAF 73 (269)
Q Consensus 45 ~i~~G~~~~~vs~~-Gc~Ga~~es~~lL~~ 73 (269)
+..+|+++.+++++ +.++.+++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 45667666655544 778888887755444
No 96
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=22.76 E-value=2.2e+02 Score=22.41 Aligned_cols=46 Identities=17% Similarity=0.358 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHHHHHHHHHhh
Q 024312 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~~~~~vs~~G 59 (269)
++..+...++.++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 3 ~~~~~~~~~L~~~G~Y~il~rn-lir~iigl~il~~avnL~lv~~g~ 48 (114)
T PRK09094 3 LVLALAIGVLTASGVWLLLRPR-TFQVILGLSLLSYAVNLFIFAMGR 48 (114)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566667788999877542 122222334667777666666554
No 97
>PF07343 DUF1475: Protein of unknown function (DUF1475); InterPro: IPR009943 This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.
Probab=22.66 E-value=5.6e+02 Score=22.94 Aligned_cols=73 Identities=7% Similarity=-0.017 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhHHHHHHH--HHHHHHHhhhhhhhccchhhHHHHHHHHH
Q 024312 7 ITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGV--LVLLVSLCGFIGAYWYKETLLAFYLCVMA 79 (269)
Q Consensus 7 ~l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p~i~~G~--~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ 79 (269)
.....-++|-++|+.++++=+|..++.+.....-+..|=.++-. +-+-+.+++..=+.||+......--++++
T Consensus 132 ~vv~ar~vf~iLGavMl~vliyt~iTdG~pFr~~LltPWm~atLvDfYi~v~~~s~WV~~kEs~~~~~~~Wiill 206 (254)
T PF07343_consen 132 FVVTARIVFSILGAVMLFVLIYTLITDGSPFRKELLTPWMVATLVDFYINVFAFSVWVWYKESSWISAILWIILL 206 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHhcChHHHHHHHHHHHhHHhhhhhhheecccHHHHHHHHHHH
Confidence 34445567889999999888887665433333334466333333 23345567888899999887664443333
No 98
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.47 E-value=79 Score=28.05 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 024312 43 WPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 43 ~p~i~~G~~~~~vs~~Gc 60 (269)
..++++|+++++++++=.
T Consensus 62 yVLVG~Gv~LLLLSICL~ 79 (233)
T PF15345_consen 62 YVLVGSGVALLLLSICLS 79 (233)
T ss_pred EehhhHHHHHHHHHHHHH
Confidence 348999999999888644
No 99
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.42 E-value=2e+02 Score=21.54 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHh
Q 024312 46 VLLGVLVLLVSLC 58 (269)
Q Consensus 46 i~~G~~~~~vs~~ 58 (269)
+++|..++++||+
T Consensus 69 ~~IGfg~~~~Gf~ 81 (87)
T PF06781_consen 69 LAIGFGLMIVGFL 81 (87)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777765
No 100
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.38 E-value=1.1e+02 Score=31.98 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhheee
Q 024312 68 ETLLAFYLCVMAILIVLLLVVLVFAFVVT 96 (269)
Q Consensus 68 ~~lL~~y~~~l~~l~i~el~~~i~~~~~~ 96 (269)
.|.-.+|.++|+++.++.++..+.+|+..
T Consensus 136 ~c~R~~l~~~L~~~~~~il~g~i~aF~~n 164 (806)
T PF05478_consen 136 ACRRGCLGILLLLLTLIILFGVICAFVAN 164 (806)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777766666666777777753
No 101
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=21.47 E-value=92 Score=21.94 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 024312 13 FIALLCSIPIIASGIWLASK 32 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~ 32 (269)
.+..++|+.++++|+|...+
T Consensus 48 ~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 48 WLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999997764
No 102
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=20.54 E-value=3.9e+02 Score=20.36 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 024312 45 VVLLGVLVLLVSLCGFIG 62 (269)
Q Consensus 45 ~i~~G~~~~~vs~~Gc~G 62 (269)
+.++|.++-++|-+=.+-
T Consensus 47 ~yaI~aVvglIGai~VY~ 64 (98)
T PF13572_consen 47 MYAIGAVVGLIGAIRVYI 64 (98)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555444444444333
No 103
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.51 E-value=4.3e+02 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.014 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 024312 4 SNNITAVLNFIALLCSIPIIASGIWLASKPD 34 (269)
Q Consensus 4 ~k~~l~~~N~l~~l~G~~ll~~Gi~~~~~~~ 34 (269)
.|-++-..-.++.++|..+..+|..-....+
T Consensus 2 ~~~~~~~l~~ill~~G~~~~ligaiGllR~P 32 (118)
T PRK12587 2 IKIILISLALIFVIIGALISALAAIGLLRLE 32 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556667778888999999888888777654
No 104
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=20.49 E-value=1.3e+02 Score=27.00 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhee
Q 024312 70 LLAFYLCVMAILIVLLLVVLVFAFVV 95 (269)
Q Consensus 70 lL~~y~~~l~~l~i~el~~~i~~~~~ 95 (269)
.|.+|..+|++++++-++.++..+-.
T Consensus 36 cLY~fvLlL~i~ivvNLalTiWIlkV 61 (292)
T KOG3950|consen 36 CLYTFVLLLMILIVVNLALTIWILKV 61 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788889999999999998877654
No 105
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=20.36 E-value=1.4e+02 Score=23.85 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhhhch
Q 024312 228 RKANIILIVAVVILIW-VYLIACSAFKNAQT 257 (269)
Q Consensus 228 ~~v~~v~i~i~~~~i~-~~~~ac~l~~~~~~ 257 (269)
.+++++.++.+.+|.. |+.+||..|...+|
T Consensus 100 ~i~~~~~~~aA~le~~fGfClGC~~y~~l~r 130 (131)
T PF14340_consen 100 YILAAILLVAAFLEAAFGFCLGCFMYYQLKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 3445555556777877 99999988876543
No 106
>PHA03048 IMV membrane protein; Provisional
Probab=20.08 E-value=1.5e+02 Score=22.37 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024312 227 WRKANIILIVAVVILIWVYLI 247 (269)
Q Consensus 227 ~~~v~~v~i~i~~~~i~~~~~ 247 (269)
|+.+.+++.++.++.++|+++
T Consensus 43 wRalsii~FIlgivl~lG~~i 63 (93)
T PHA03048 43 WRALSGIAFVLGIVMTIGMLI 63 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888765
No 107
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=20.06 E-value=2.2e+02 Score=20.81 Aligned_cols=11 Identities=9% Similarity=0.156 Sum_probs=6.4
Q ss_pred HHhhhheeecC
Q 024312 88 VLVFAFVVTRP 98 (269)
Q Consensus 88 ~~i~~~~~~~~ 98 (269)
++.+++..++.
T Consensus 59 ~~~~g~~k~~g 69 (93)
T PF12666_consen 59 FAFLGFFKKDG 69 (93)
T ss_pred HHHhHhhhhcC
Confidence 55566666554
Done!