Query 024312
Match_columns 269
No_of_seqs 195 out of 1111
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 98.1 8.8E-07 3E-11 65.2 1.3 58 128-226 32-89 (90)
2 1r9i_A MU-conotoxin PIIIA; cys 34.4 14 0.00049 20.2 0.9 11 167-177 2-12 (26)
3 2jwa_A Receptor tyrosine-prote 31.7 64 0.0022 20.1 3.8 24 231-254 15-38 (44)
4 1gib_A MU-conotoxin GIIIB; neu 21.9 32 0.0011 18.6 0.9 10 168-177 2-11 (26)
5 2kog_A Vesicle-associated memb 19.3 1.2E+02 0.004 22.9 4.0 23 227-249 96-118 (119)
6 3rko_K NADH-quinone oxidoreduc 18.2 2.7E+02 0.0092 19.8 9.0 73 16-94 8-81 (100)
7 1pi7_A VPU protein, U ORF prot 17.4 1.7E+02 0.006 17.3 3.7 28 231-258 7-35 (36)
8 2klu_A T-cell surface glycopro 14.2 1.2E+02 0.0041 20.6 2.5 14 46-59 12-25 (70)
9 1rh5_B Preprotein translocase 13.3 2.3E+02 0.0077 19.5 3.9 21 227-247 35-55 (74)
10 2l2t_A Receptor tyrosine-prote 12.8 2.7E+02 0.0092 17.2 3.7 32 229-260 12-43 (44)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=98.06 E-value=8.8e-07 Score=65.17 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=40.9
Q ss_pred ccchHHHHHhhhcCCcccCcccCCCChhhhhhhcCCccCcCccCCCCCCCCcCCCCccccCCCCCCCCCCCCCccccccc
Q 024312 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQSGCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQSQ 207 (269)
Q Consensus 128 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~~ 207 (269)
+..||.+|. +++|||.++ +.||.. .++|.|||.+...| . +
T Consensus 32 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~---~~vP~ScC~~~~~~----------------------~--~----- 71 (90)
T 1g8q_A 32 KAVVKTFHE----TLDCCGSST----LTALTT---SVLKNNLCPSGSNI----------------------I--S----- 71 (90)
T ss_dssp HHHHHHHHH----HHTCCSCTT----CGGGHH---HHHHTTCSCTTCCH----------------------H--H-----
T ss_pred HHHHHHHHH----hhcCCCCCC----hhhhcc---CCCCCCCCCCCCCC----------------------c--c-----
Confidence 568999987 899999876 778853 35899999532111 0 0
Q ss_pred ccccCcchHHHHHHHHHHh
Q 024312 208 LCYNCSSCKAGLLGNLRNE 226 (269)
Q Consensus 208 ~cy~c~gC~~~i~~~l~~~ 226 (269)
.-|. +||..++.++++++
T Consensus 72 ~~~~-~GC~~~i~~~~~~n 89 (90)
T 1g8q_A 72 NLFK-EDCHQKIDDLFSGK 89 (90)
T ss_dssp HHTS-CCHHHHHHHHHHTC
T ss_pred cCcc-CCcHHHHHHHHHhC
Confidence 1122 79999999999875
No 2
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=34.39 E-value=14 Score=20.17 Aligned_cols=11 Identities=36% Similarity=0.905 Sum_probs=8.4
Q ss_pred cCccCCCCCCC
Q 024312 167 SGCCKPPTICG 177 (269)
Q Consensus 167 ~sCC~~p~~Cg 177 (269)
..||++|.+|.
T Consensus 2 r~CC~~Pk~Ck 12 (26)
T 1r9i_A 2 RLCCGFPKSCR 12 (26)
T ss_dssp CTTTTSTTGGG
T ss_pred CcccCCCCccc
Confidence 35999988883
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=31.66 E-value=64 Score=20.12 Aligned_cols=24 Identities=0% Similarity=0.015 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 024312 231 NIILIVAVVILIWVYLIACSAFKN 254 (269)
Q Consensus 231 ~~v~i~i~~~~i~~~~~ac~l~~~ 254 (269)
++..++++++.+++.+++..+-|.
T Consensus 15 a~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 15 ISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhheehh
Confidence 333334555555666665555543
No 4
>1gib_A MU-conotoxin GIIIB; neurotoxin, sodium channel inhibitor; HET: HYP; NMR {Conus geographus} SCOP: j.30.1.1 PDB: 1tcg_A* 1tcj_A* 1tch_A* 1tck_A*
Probab=21.94 E-value=32 Score=18.61 Aligned_cols=10 Identities=50% Similarity=1.547 Sum_probs=7.3
Q ss_pred CccCCCCCCC
Q 024312 168 GCCKPPTICG 177 (269)
Q Consensus 168 sCC~~p~~Cg 177 (269)
-||.+|-+|.
T Consensus 2 ~cc~~p~~ck 11 (26)
T 1gib_A 2 DCCTPPRKCK 11 (26)
T ss_dssp CSSSSSCCCC
T ss_pred cccCCCcccc
Confidence 3888887773
No 5
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=19.35 E-value=1.2e+02 Score=22.86 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024312 227 WRKANIILIVAVVILIWVYLIAC 249 (269)
Q Consensus 227 ~~~v~~v~i~i~~~~i~~~~~ac 249 (269)
+....+++++++++.++.++.+|
T Consensus 96 ~K~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 96 LKMMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhee
Confidence 33344444444444444444444
No 6
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=18.23 E-value=2.7e+02 Score=19.80 Aligned_cols=73 Identities=8% Similarity=0.026 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhccCCCcchh-hhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhhe
Q 024312 16 LLCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFV 94 (269)
Q Consensus 16 ~l~G~~ll~~Gi~~~~~~~~~~~~-~~~~p~i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~~l~i~el~~~i~~~~ 94 (269)
.+++..+..+|+|....+. ..-. ....-++..++.+.++.+.-..+.. .-..+..+.+++-..|.+.|....+
T Consensus 8 ~~~~~~lf~iGl~g~~~r~-~ll~~LlslE~m~l~v~l~l~~~~~~~~~~-----~~~~~~l~~l~~aa~E~alGLallv 81 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRR-NLLFMLIGLEIMINASALAFVVAGSYWGQT-----DGQVMYILAISLAAAEASIGLALLL 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCC-BHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888655432 2211 2223367777776666554443311 1112334444455568777665555
No 7
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=17.44 E-value=1.7e+02 Score=17.27 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=15.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhhhhchh
Q 024312 231 NIILIVA-VVILIWVYLIACSAFKNAQTE 258 (269)
Q Consensus 231 ~~v~i~i-~~~~i~~~~~ac~l~~~~~~~ 258 (269)
+++++++ +++.++.-.+...-+|..+++
T Consensus 7 ~ivalivalIiaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666655 344455555555666655543
No 8
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=14.16 E-value=1.2e+02 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhh
Q 024312 46 VLLGVLVLLVSLCG 59 (269)
Q Consensus 46 i~~G~~~~~vs~~G 59 (269)
|++|.++.++.|.|
T Consensus 12 ivlGg~~~lll~~g 25 (70)
T 2klu_A 12 IVLGGVAGLLLFIG 25 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 56666554444444
No 9
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.30 E-value=2.3e+02 Score=19.55 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024312 227 WRKANIILIVAVVILIWVYLI 247 (269)
Q Consensus 227 ~~~v~~v~i~i~~~~i~~~~~ 247 (269)
..+.-++++|++++-++|+++
T Consensus 35 ~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 35 LAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666665
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.85 E-value=2.7e+02 Score=17.19 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhchhhh
Q 024312 229 KANIILIVAVVILIWVYLIACSAFKNAQTEDL 260 (269)
Q Consensus 229 ~v~~v~i~i~~~~i~~~~~ac~l~~~~~~~~~ 260 (269)
+.++|--+++++.+++......+-|..+++.+
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Done!