BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024314
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 209 bits (533), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 165/256 (64%), Gaps = 4/256 (1%)
Query: 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
K P E+VK K +L L+ + K +KA EE+ K+ M+ +L G E EP + V
Sbjct: 15 KNPAEIVKILKDNLAILEKQD----KKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVA 70
Query: 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
QLA E+ +L+ L+ L ++ +E +KD+ ++ +L++++ + V++I H +L
Sbjct: 71 QLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILF 130
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
L+ Y+ ++AL CGIMLRECI+ LA+ IL S F FFK+VEL TFD+ASDAF+TF
Sbjct: 131 MLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATF 190
Query: 192 KDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251
KDLLT+H +V+++L +YD F+ YEKLL S NYVT+RQSLKLL E +L+ N IM +
Sbjct: 191 KDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTK 250
Query: 252 YILEVRFLKVMMTLLK 267
YI + LK+MM LL+
Sbjct: 251 YISKPENLKLMMNLLR 266
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 207 bits (526), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 173/267 (64%), Gaps = 3/267 (1%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
M F F K K+P ++VK K S+ L+ + + + KA EKA EE+ KN V M+ +L G
Sbjct: 1 MPFPFGKSH--KSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGT 57
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
E EP + V QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V
Sbjct: 58 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV 117
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
++I +L L+ Y++ E+AL+CGIMLRECI+ LA+ IL S F FF++VE+ T
Sbjct: 118 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST 177
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240
FD+ASDAF+TFKDLLT+H + +E+L HYD FF YEKLL S NYVT+RQSLKLL E L
Sbjct: 178 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237
Query: 241 LEPPNSHIMKRYILEVRFLKVMMTLLK 267
L+ N IM +YI + LK+MM LL+
Sbjct: 238 LDRHNFTIMTKYISKPENLKLMMNLLR 264
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal
Peptide Of Strad
pdb|1UPL|A Chain A, Crystal Structure Of Mo25 Alpha
pdb|1UPL|B Chain B, Crystal Structure Of Mo25 Alpha
Length = 341
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 155/242 (64%), Gaps = 1/242 (0%)
Query: 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
K+P ++VK K S L+ + + + KA EKA EE+ KN V + +L G E EP + V
Sbjct: 10 KSPADIVKNLKESXAVLEKQDISDKKA-EKATEEVSKNLVAXKEILYGTNEKEPQTEAVA 68
Query: 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V++I +L
Sbjct: 69 QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 128
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
L+ Y++ E+AL+CGI LRECI+ LA+ IL S F FF++VE TFD+ASDAF+TF
Sbjct: 129 XLLKGYESPEIALNCGIXLRECIRHEPLAKIILWSEQFYDFFRYVEXSTFDIASDAFATF 188
Query: 192 KDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251
KDLLT+H + +E+L HYD FF YEKLL S NYVT+RQSLKLL E LL+ N I +
Sbjct: 189 KDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIXTK 248
Query: 252 YI 253
YI
Sbjct: 249 YI 250
>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
Length = 349
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 147 GIMLRECIKFPSLARYILESASFELFFKFVELPTFDV 183
G ML + ++ +L+ ESA+F++F K+++ FDV
Sbjct: 118 GEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDV 154
>pdb|1UWZ|A Chain A, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Ala
Substitution
pdb|1UWZ|B Chain B, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Ala
Substitution
Length = 136
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 16 EVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLAT 75
+V + + A + E AL KA+ E + F + G V P Q+ +
Sbjct: 36 KVYRGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVAADTPGPVSP-CGACRQVIS 94
Query: 76 EVCKEDVLILLVH 88
E+C +DV+++L +
Sbjct: 95 ELCTKDVIVVLTN 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,213,227
Number of Sequences: 62578
Number of extensions: 281329
Number of successful extensions: 962
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 17
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)