Query 024314
Match_columns 269
No_of_seqs 124 out of 224
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 8E-100 2E-104 716.9 24.0 263 1-268 1-265 (335)
2 KOG1566 Conserved protein Mo25 100.0 7.6E-97 2E-101 684.2 25.7 266 1-268 1-268 (342)
3 PF10508 Proteasom_PSMB: Prote 86.3 15 0.00032 36.9 13.1 166 86-266 43-211 (503)
4 cd00020 ARM Armadillo/beta-cat 85.6 6.2 0.00013 29.7 7.9 97 140-239 21-118 (120)
5 PF08767 CRM1_C: CRM1 C termin 85.4 15 0.00032 34.9 11.9 170 83-255 73-272 (319)
6 KOG1566 Conserved protein Mo25 79.9 3.6 7.7E-05 39.8 5.4 132 127-258 38-180 (342)
7 PTZ00446 vacuolar sorting prot 78.3 4.8 0.0001 36.0 5.4 30 1-30 1-41 (191)
8 PF11262 Tho2: Transcription f 75.2 75 0.0016 30.0 15.6 174 40-241 73-256 (298)
9 KOG0946 ER-Golgi vesicle-tethe 73.9 41 0.0009 36.5 11.5 128 67-198 107-243 (970)
10 cd00020 ARM Armadillo/beta-cat 73.2 18 0.00038 27.2 6.8 113 76-194 2-118 (120)
11 PF08569 Mo25: Mo25-like; Int 68.0 1.1E+02 0.0024 29.5 12.3 141 72-215 155-304 (335)
12 PF12717 Cnd1: non-SMC mitotic 68.0 28 0.0006 29.8 7.6 82 168-253 64-152 (178)
13 KOG0166 Karyopherin (importin) 67.2 63 0.0014 33.2 10.9 137 41-195 337-485 (514)
14 PLN03200 cellulose synthase-in 65.2 1.1E+02 0.0024 36.7 13.4 178 77-268 526-705 (2102)
15 PF05952 ComX: Bacillus compet 63.4 4.8 0.0001 29.5 1.6 19 119-137 5-23 (57)
16 KOG0946 ER-Golgi vesicle-tethe 57.8 1E+02 0.0022 33.6 10.7 154 67-268 21-177 (970)
17 KOG1525 Sister chromatid cohes 57.5 3.5E+02 0.0075 31.1 16.9 217 11-245 16-292 (1266)
18 KOG1655 Protein involved in va 57.2 45 0.00098 30.4 7.0 132 1-141 1-157 (218)
19 PLN03200 cellulose synthase-in 56.8 2.4E+02 0.0051 34.1 14.2 167 72-242 90-262 (2102)
20 COG5657 CSE1 CAS/CSE protein i 55.4 50 0.0011 36.1 8.1 139 77-227 85-243 (947)
21 PF12783 Sec7_N: Guanine nucle 53.0 1.4E+02 0.003 25.1 9.2 82 158-244 65-149 (168)
22 PF08064 UME: UME (NUC010) dom 52.6 15 0.00033 29.3 3.0 39 203-241 2-44 (107)
23 KOG4553 Uncharacterized conser 52.4 2.6E+02 0.0057 31.7 12.8 143 40-219 483-650 (1398)
24 PF01602 Adaptin_N: Adaptin N 50.4 2.5E+02 0.0054 27.3 16.8 117 138-268 316-441 (526)
25 KOG4438 Centromere-associated 48.4 73 0.0016 32.1 7.5 112 90-213 6-125 (446)
26 PF00514 Arm: Armadillo/beta-c 46.2 71 0.0015 20.4 5.0 37 73-109 4-40 (41)
27 PF12717 Cnd1: non-SMC mitotic 45.5 34 0.00073 29.3 4.3 52 183-242 4-55 (178)
28 PF10508 Proteasom_PSMB: Prote 45.3 3.4E+02 0.0073 27.4 17.6 109 128-240 202-318 (503)
29 PF07304 SRA1: Steroid recepto 45.0 43 0.00094 28.8 4.8 43 40-82 64-106 (157)
30 PF15087 DUF4551: Protein of u 43.7 99 0.0021 32.5 7.9 217 4-240 363-613 (617)
31 KOG1992 Nuclear export recepto 42.8 3.2E+02 0.007 30.1 11.6 23 203-225 225-247 (960)
32 PF03224 V-ATPase_H_N: V-ATPas 40.0 1.4E+02 0.0031 27.7 7.9 95 168-266 106-200 (312)
33 PF03800 Nuf2: Nuf2 family; I 40.0 2.1E+02 0.0045 23.7 8.1 40 169-216 90-131 (146)
34 PF06757 Ins_allergen_rp: Inse 38.2 45 0.00098 28.8 3.9 25 158-182 23-47 (179)
35 PF14680 FANCI_HD2: FANCI heli 36.2 45 0.00098 30.5 3.8 47 146-215 35-84 (234)
36 PF06371 Drf_GBD: Diaphanous G 34.0 2.8E+02 0.006 23.1 10.7 59 178-239 127-185 (187)
37 KOG3230 Vacuolar assembly/sort 33.5 1.9E+02 0.0041 26.4 7.1 68 1-80 1-68 (224)
38 PF01417 ENTH: ENTH domain; I 33.5 1.3E+02 0.0029 24.1 5.8 91 60-154 14-112 (125)
39 PF13646 HEAT_2: HEAT repeats; 32.3 76 0.0016 22.9 3.8 45 212-257 31-75 (88)
40 PF04136 Sec34: Sec34-like fam 32.0 1.3E+02 0.0028 25.8 5.7 76 130-209 30-114 (157)
41 PF07319 DnaI_N: Primosomal pr 31.4 99 0.0021 24.1 4.5 43 154-218 19-62 (94)
42 KOG2056 Equilibrative nucleosi 30.2 2.2E+02 0.0047 27.8 7.5 46 63-108 35-80 (336)
43 KOG0928 Pattern-formation prot 29.7 3.6E+02 0.0078 31.1 9.8 182 40-255 341-585 (1386)
44 PHA02800 hypothetical protein; 28.3 3.3E+02 0.0071 23.8 7.4 89 134-223 44-143 (161)
45 cd03571 ENTH_epsin ENTH domain 28.1 1.3E+02 0.0028 24.9 4.9 97 61-161 13-114 (123)
46 PF01602 Adaptin_N: Adaptin N 27.9 5.7E+02 0.012 24.8 10.9 24 171-194 156-179 (526)
47 PF04690 YABBY: YABBY protein; 27.1 84 0.0018 27.7 3.8 48 10-59 122-169 (170)
48 KOG0414 Chromosome condensatio 26.0 8.6E+02 0.019 27.9 11.8 161 80-250 269-436 (1251)
49 KOG1991 Nuclear transport rece 26.0 9.7E+02 0.021 26.9 12.6 198 53-266 6-231 (1010)
50 PF02985 HEAT: HEAT repeat; I 24.7 70 0.0015 19.5 2.1 26 215-240 3-28 (31)
51 PF14771 DUF4476: Domain of un 24.6 2.6E+02 0.0056 21.4 5.8 76 165-254 6-83 (95)
52 cd03572 ENTH_epsin_related ENT 24.6 4.1E+02 0.0089 22.1 8.3 89 63-154 14-110 (122)
53 COG5098 Chromosome condensatio 24.2 4.8E+02 0.01 28.6 9.1 100 145-250 322-423 (1128)
54 PRK15201 fimbriae regulatory p 24.1 58 0.0013 29.4 2.2 87 52-148 69-160 (198)
55 cd01019 ZnuA Zinc binding prot 23.7 3.2E+02 0.0069 25.2 7.2 46 11-56 127-173 (286)
56 PF01365 RYDR_ITPR: RIH domain 23.1 2.1E+02 0.0046 24.8 5.6 33 183-215 115-149 (207)
57 PF04388 Hamartin: Hamartin pr 22.2 2.1E+02 0.0045 30.3 6.2 72 168-241 5-97 (668)
58 PF02582 DUF155: Uncharacteris 22.1 1.1E+02 0.0023 26.3 3.4 54 204-257 87-145 (175)
59 cd01017 AdcA Metal binding pro 21.9 3.9E+02 0.0085 24.4 7.4 48 11-58 119-167 (282)
60 PF08006 DUF1700: Protein of u 21.9 2.1E+02 0.0046 24.4 5.3 61 13-81 2-64 (181)
61 cd01018 ZntC Metal binding pro 21.8 4E+02 0.0087 24.1 7.4 48 11-58 118-166 (266)
62 PF10835 DUF2573: Protein of u 21.6 2.5E+02 0.0053 22.0 4.9 66 41-109 3-70 (82)
63 PF01297 TroA: Periplasmic sol 21.5 3.5E+02 0.0076 24.1 6.8 72 11-82 98-200 (256)
64 PF12231 Rif1_N: Rap1-interact 21.1 6.9E+02 0.015 24.0 9.2 82 153-239 115-202 (372)
65 KOG1533 Predicted GTPase [Gene 20.9 1.1E+02 0.0024 29.0 3.4 45 181-227 49-100 (290)
66 COG4836 Predicted membrane pro 20.6 54 0.0012 25.2 1.2 46 207-260 28-73 (77)
67 PTZ00464 SNF-7-like protein; P 20.5 99 0.0021 28.0 3.0 48 1-55 1-50 (211)
68 COG0219 CspR Predicted rRNA me 20.4 52 0.0011 28.7 1.1 17 139-155 9-25 (155)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=8.1e-100 Score=716.88 Aligned_cols=263 Identities=52% Similarity=0.809 Sum_probs=233.7
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh
Q 024314 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (269)
Q Consensus 1 Msflf~~~~r~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~ 80 (269)
|+||||++ ||||+|+||+++|+|.+|+. ..+++++|++|||+|+|++||.||+|++|++|+||+|+||++|+|++
T Consensus 1 M~FlF~k~--~KtP~ElVr~l~e~L~~L~~---~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~ 75 (335)
T PF08569_consen 1 MSFLFKKK--PKTPAELVRSLREALEKLDS---KSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS 75 (335)
T ss_dssp -------------HHHHHHHHHHHHHHHHS---S-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred CCCCcCCC--CCCHHHHHHHHHHHHHHhcc---ccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 99999997 99999999999999999971 13456799999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCcc-chhhhhhcc-HHHHHHHHHhccCcchhhhhhHHHHHHhhhHH
Q 024314 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CCVQFIENH-FELLDFLVVCYDNKEVALHCGIMLRECIKFPS 158 (269)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~-p~v~Yl~~~-peil~~L~~gY~~~dial~~G~mLREcik~e~ 158 (269)
|++..||.+|+.||||+|||+++||++++|+++++++ |+|+||.+| |||+++|+.||++||+|++||.|||||+|||+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999 999999999 99999999999999999999999999999999
Q ss_pred HHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHH
Q 024314 159 LARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSE 238 (269)
Q Consensus 159 la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLge 238 (269)
+|++||++++||+||+|++.|+||||||||+||+|+||+||++||+||.+|||+||++|++||+|+||||||||||||||
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e 235 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE 235 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHhhCChhhHHHHHHhccc
Q 024314 239 FLLEPPNSHIMKRYILEVRFLKVMMTLLKV 268 (269)
Q Consensus 239 lLldr~N~~vM~rYis~~~NLkl~M~LLr~ 268 (269)
||+||+|++||+|||+||+|||+||+|||+
T Consensus 236 llldr~n~~vm~~yi~~~~nLkl~M~lL~d 265 (335)
T PF08569_consen 236 LLLDRSNFNVMTRYISSPENLKLMMNLLRD 265 (335)
T ss_dssp HHHSGGGHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHchhHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999986
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=7.6e-97 Score=684.16 Aligned_cols=266 Identities=50% Similarity=0.767 Sum_probs=261.0
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh
Q 024314 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (269)
Q Consensus 1 Msflf~~~~r~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~ 80 (269)
|+||||++ ||||+|+||.+||+|..++..++-.+.+++|++|||+|++..+|+|+||++|.||.+|+|+||++|+|+.
T Consensus 1 M~~~f~k~--~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~ 78 (342)
T KOG1566|consen 1 MFFLFKKS--PKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNA 78 (342)
T ss_pred CCCccCCC--CCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhC
Confidence 89999998 9999999999999999999987667788999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHhccC-cchhhhhhHHHHHHhhhHHH
Q 024314 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDN-KEVALHCGIMLRECIKFPSL 159 (269)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~-~dial~~G~mLREcik~e~l 159 (269)
|++.+||+++|+++||+|||+++||++++||++|+++|||+|+++|||+++.|+.||++ ||+|++||+|||||+|||.|
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~L 158 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFL 158 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHH-HHhhhcCCCccchhchhhhhHH
Q 024314 160 ARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDL-YEKLLTSSNYVTRRQSLKLLSE 238 (269)
Q Consensus 160 a~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~-yn~Ll~s~NYVTkRQSLKLLge 238 (269)
|+++|+|++||+||.||+.|+||||||||+|||+++|+||.+|||||.+|||+||.+ |++|++|+||||||||+|||||
T Consensus 159 akiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ 238 (342)
T KOG1566|consen 159 AKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGE 238 (342)
T ss_pred HHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999 6689999999999999999999
Q ss_pred hhcCCCCHHHHHHhhCChhhHHHHHHhccc
Q 024314 239 FLLEPPNSHIMKRYILEVRFLKVMMTLLKV 268 (269)
Q Consensus 239 lLldr~N~~vM~rYis~~~NLkl~M~LLr~ 268 (269)
+|+||+|+.+|++||++|+|||+||+||||
T Consensus 239 llldr~N~~~M~kYiss~enLKlmM~llrd 268 (342)
T KOG1566|consen 239 LLLDRSNSAVMTKYISSPENLKLMMNLLRD 268 (342)
T ss_pred HHhCCCcHHHHHHHhcCHHHHHHHHHHhhC
Confidence 999999999999999999999999999997
No 3
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=86.35 E-value=15 Score=36.94 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=106.7
Q ss_pred HHhhCCCCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHhccCcchhh--hhhHHHHHHhhhHHH-HHH
Q 024314 86 LVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVAL--HCGIMLRECIKFPSL-ARY 162 (269)
Q Consensus 86 Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial--~~G~mLREcik~e~l-a~~ 162 (269)
+..+|..=+-|.-..++.|...++. ...| +.+ -|++...|..|..+|+-.. .+=..|+-|+++..- +..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~----~~~~--~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~ 114 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLS----ALSP--DSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL 114 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHh----ccCH--HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344443344544455555555553 2222 222 6788888888887765332 222336777777554 556
Q ss_pred HhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhcC
Q 024314 163 ILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLE 242 (269)
Q Consensus 163 iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLld 242 (269)
+...+.+-.+...+..++-+||..|...++.+.. |+.-.+..+..|- ..+..+++.++|=+.|.+.+-++.++--
T Consensus 115 ~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~- 189 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNL---LSKLKSLMSQSSDIVRCRVYELLVEIAS- 189 (503)
T ss_pred hcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcch---HHHHHHHHhccCHHHHHHHHHHHHHHHh-
Confidence 6666677777788999999999999999999886 5555566666664 7778889988777889899999988853
Q ss_pred CCCHHHHHHhhCChhhHHHHHHhc
Q 024314 243 PPNSHIMKRYILEVRFLKVMMTLL 266 (269)
Q Consensus 243 r~N~~vM~rYis~~~NLkl~M~LL 266 (269)
.+...+ .|+.+..-+..+...|
T Consensus 190 -~S~~~~-~~~~~sgll~~ll~eL 211 (503)
T PF10508_consen 190 -HSPEAA-EAVVNSGLLDLLLKEL 211 (503)
T ss_pred -cCHHHH-HHHHhccHHHHHHHHh
Confidence 333333 3444444455444433
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.61 E-value=6.2 Score=29.74 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=72.1
Q ss_pred cchhhhhhHHHHHHhhh-HHHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHH
Q 024314 140 KEVALHCGIMLRECIKF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYE 218 (269)
Q Consensus 140 ~dial~~G~mLREcik~-e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn 218 (269)
+++-..+-.-|.....+ +.....++..+.+..+.+++..++-++.-.|..++..+....+.....+... .+.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEA---GGVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHC---CChHHHH
Confidence 45555555556666665 7777788888888888889988999999999999999876554333333333 2666777
Q ss_pred hhhcCCCccchhchhhhhHHh
Q 024314 219 KLLTSSNYVTRRQSLKLLSEF 239 (269)
Q Consensus 219 ~Ll~s~NYVTkRQSLKLLgel 239 (269)
+++.+++.=++++++-+|+.|
T Consensus 98 ~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHh
Confidence 888888888999999988865
No 5
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=85.41 E-value=15 Score=34.92 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=101.7
Q ss_pred HHHHHhhCCCCChhhhh-hHHHHHHHHhhcccCCccchhhhhhcc--HHHHHHHHHhc-cCcchhhhhhHHHHHHhhh--
Q 024314 83 LILLVHKLPILGWEARK-DLVHCWSILLKQKVDSTYCCVQFIENH--FELLDFLVVCY-DNKEVALHCGIMLRECIKF-- 156 (269)
Q Consensus 83 l~~Li~~l~~L~fE~RK-dv~~If~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gY-~~~dial~~G~mLREcik~-- 156 (269)
+..++.--..-..++|- .|-.+++++.++-.+.-.|.+.-+.++ --++.+.-..+ +.||.....=.+||-++++
T Consensus 73 ~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f 152 (319)
T PF08767_consen 73 LDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCF 152 (319)
T ss_dssp HHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH
Confidence 33344444444556665 566777777764322112222222221 12222223334 4699999999999999987
Q ss_pred HHHHHHHhcchhHHHHhhh----ccCCCchhhhchHHHHHHHHhcch----hhHHHHHHhhHHHHHHHHHh-hhcCCCc-
Q 024314 157 PSLARYILESASFELFFKF----VELPTFDVASDAFSTFKDLLTKHL----TVVSEYLTAHYDEFFDLYEK-LLTSSNY- 226 (269)
Q Consensus 157 e~la~~iL~~~~f~~fF~y----v~~~~FeiasDAf~TfkelLt~Hk----~lvaefl~~Nyd~Ff~~yn~-Ll~s~NY- 226 (269)
+.+.. |..+.|..+++. ++.++-||+..++.++.+++++.. ....+|..+.|-.+..+.-. |..+..=
T Consensus 153 ~~l~~--lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~ 230 (319)
T PF08767_consen 153 PALLQ--LPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKS 230 (319)
T ss_dssp HHHHH--S-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GG
T ss_pred HHHHc--CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHH
Confidence 44443 667777777765 368999999999999999999644 44558888888777777665 3333322
Q ss_pred cchhchhhhhHHhhc--------------CCCCHHHHHHhhCC
Q 024314 227 VTRRQSLKLLSEFLL--------------EPPNSHIMKRYILE 255 (269)
Q Consensus 227 VTkRQSLKLLgelLl--------------dr~N~~vM~rYis~ 255 (269)
.=+.|+ .+|..++- ..+|..++..|+++
T Consensus 231 gf~~q~-~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~ 272 (319)
T PF08767_consen 231 GFKLQS-QILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIAN 272 (319)
T ss_dssp GHHHHH-HHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHcccccccccCCCCccHHHHHHHHHH
Confidence 223333 66666661 23677777777754
No 6
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=79.94 E-value=3.6 Score=39.79 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=97.2
Q ss_pred HHHHHHHHHhccCcchhhhhhHHHHHHhhh-HHHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcch---hhH
Q 024314 127 FELLDFLVVCYDNKEVALHCGIMLRECIKF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHL---TVV 202 (269)
Q Consensus 127 peil~~L~~gY~~~dial~~G~mLREcik~-e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk---~lv 202 (269)
-++++.+-+||..+...+......+.-... -+|+.-+-.+..+.....+...-.||---|+...|.-++.++. ..+
T Consensus 38 ~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~t 117 (342)
T KOG1566|consen 38 EKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPT 117 (342)
T ss_pred HHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchH
Confidence 556666666666555554444444433321 2455566667788889999999999999999999999998775 677
Q ss_pred HHHHHhhHHHHHH---HHH----hhhcCCCccchhchhhhhHHhhcCCCCHHHHHHhhCChhh
Q 024314 203 SEYLTAHYDEFFD---LYE----KLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRF 258 (269)
Q Consensus 203 aefl~~Nyd~Ff~---~yn----~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~N 258 (269)
++||..|.+-.+. .|. ..|+.||-.----+-+-|.+++|.-.|+.-.-.||..|..
T Consensus 118 v~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F 180 (342)
T KOG1566|consen 118 VEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF 180 (342)
T ss_pred HHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch
Confidence 8999988776443 333 2678888776666667899999999999999999988765
No 7
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=78.31 E-value=4.8 Score=36.03 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=20.5
Q ss_pred CCccCCCCCC-CC----------ChHHHHHHHHHHHHhccc
Q 024314 1 MSFSFFKPSR-PK----------TPLEVVKATKVSLMALDI 30 (269)
Q Consensus 1 Msflf~~~~r-~k----------tP~e~Vr~~~e~l~~l~~ 30 (269)
|-|||||++. |- +|.+-+-.+++++..|+.
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~k 41 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEK 41 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 7899998742 21 366777777777776654
No 8
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=75.21 E-value=75 Score=29.96 Aligned_cols=174 Identities=17% Similarity=0.266 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccch
Q 024314 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCC 119 (269)
Q Consensus 40 ~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~ 119 (269)
.+..+.+-+.|+.-|.-.. ....++.+.. +..+.+.=+++-.+.. +++|= .+.=|=.++...--..+++
T Consensus 73 ~~~~~~v~~~L~~~k~~wf----~~~~~~~i~~-~~~flq~Ci~PR~~~S----~~DA~--ycakFi~~lh~~~tp~F~~ 141 (298)
T PF11262_consen 73 QEHVEKVKKRLQEEKDSWF----SSKDPEKIEA-ITAFLQHCILPRALFS----PFDAL--YCAKFIKLLHELGTPNFST 141 (298)
T ss_pred HHHHHHHHHHHHHhhhhhh----ccCChhhHHH-HHHHHHHHHHHHhhCC----HHHHH--HHHHHHHHHHhcCCCCCCH
Confidence 4455666666776666555 2233444432 3334333344444433 12211 1111112222222233455
Q ss_pred hhhhhc--cHHHHHHHHHhccCcchhhhhhHHHHHHhhhHHHHHHHhcchhHHHHhhhccCCCchhhhch-------HHH
Q 024314 120 VQFIEN--HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDA-------FST 190 (269)
Q Consensus 120 v~Yl~~--~peil~~L~~gY~~~dial~~G~mLREcik~e~la~~iL~~~~f~~fF~yv~~~~FeiasDA-------f~T 190 (269)
+.++-. +..++..++......| |-+.|.-|.+.+ +.+.+.--..+.|.+-- -..|.|-..-++ ++.
T Consensus 142 l~~~d~lf~~~~l~~~ifscTe~E-A~nlG~Fl~~iL--~~l~~W~~d~~~f~~e~--~~~pGF~~~~~~~~~~~l~~~~ 216 (298)
T PF11262_consen 142 LSLYDRLFNSKMLSPLIFSCTENE-AENLGRFLNEIL--EDLNRWHRDEEVFEKEC--ANLPGFATTFKSKPSDFLSYED 216 (298)
T ss_pred HHHHHHHHhhhhhhhHHhccCHHH-HHHHHHHHHHHH--HHHHHHHhChHHHHHHc--cCCCchhhhccccccccCCHHH
Confidence 555544 3555666666655555 666777666655 33333322222222211 345666555443 445
Q ss_pred HHHHHh-cchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhc
Q 024314 191 FKDLLT-KHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL 241 (269)
Q Consensus 191 fkelLt-~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLl 241 (269)
|+.++- =|+.+.. .+...|.|+||+..|=+|=.|..++-
T Consensus 217 f~~~~~kWh~~i~~------------~l~~~L~s~eym~iRNai~vL~~i~~ 256 (298)
T PF11262_consen 217 FRKVLYKWHKRITK------------ALISCLESKEYMHIRNAIIVLKKISP 256 (298)
T ss_pred HHHHHHHHHHHHHH------------HHHHHhcchhHHHHHHHHHHHHHHHh
Confidence 544332 2433333 34447899999999999998888874
No 9
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.88 E-value=41 Score=36.46 Aligned_cols=128 Identities=21% Similarity=0.225 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHh-hcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccchh-hhhhccHHHHHHHHHhccC-cchh
Q 024314 67 ADQVLQLATEVCK-EDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV-QFIENHFELLDFLVVCYDN-KEVA 143 (269)
Q Consensus 67 ~e~~~qL~~ei~~-~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v-~Yl~~~peil~~L~~gY~~-~dia 143 (269)
.+.-.++|..+++ .|.+..|+..+...||-.|.-..++++++++.++ |-+ +-|..+|--+..|+.--.+ .|+.
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~----~e~q~~ll~~P~gIS~lmdlL~DsrE~I 182 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP----TELQDALLVSPMGISKLMDLLRDSREPI 182 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC----HHHHHHHHHCchhHHHHHHHHhhhhhhh
Confidence 3445678887554 5999999999999999999999999999998653 223 3366677777777654332 2221
Q ss_pred hhhhH-HHHHHhhh-HHHHHHHhcchhHHHHhhhccC-C---CchhhhchHHHHHHHHhcc
Q 024314 144 LHCGI-MLRECIKF-PSLARYILESASFELFFKFVEL-P---TFDVASDAFSTFKDLLTKH 198 (269)
Q Consensus 144 l~~G~-mLREcik~-e~la~~iL~~~~f~~fF~yv~~-~---~FeiasDAf~TfkelLt~H 198 (269)
=+-|. +|-|..|. -.+-+++-....|..+|+-++. + .==|.-|++.-+.-||..|
T Consensus 183 RNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 183 RNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred chhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 11111 11222221 2334444455567888887752 2 2236778888888888776
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=73.24 E-value=18 Score=27.18 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=75.3
Q ss_pred HHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccchhhhhhc-c--HHHHHHHHHhccCcchhhhhhHHHHH
Q 024314 76 EVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIEN-H--FELLDFLVVCYDNKEVALHCGIMLRE 152 (269)
Q Consensus 76 ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~-~--peil~~L~~gY~~~dial~~G~mLRE 152 (269)
++++.+.+..++..|..=+.+.|..+.....++-.... +....+.+ . |.++..|- .+++++...+-..|..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~ 75 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN----DNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRN 75 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH----HHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 46677888888888888888999999888888875432 22333333 1 44444332 2467888888888888
Q ss_pred HhhhHH-HHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHH
Q 024314 153 CIKFPS-LARYILESASFELFFKFVELPTFDVASDAFSTFKDL 194 (269)
Q Consensus 153 cik~e~-la~~iL~~~~f~~fF~yv~~~~FeiasDAf~Tfkel 194 (269)
...+.. ....+........+.+++..++-++...|..++..+
T Consensus 76 l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 76 LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 887764 344455555677777777777777766666666543
No 11
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=68.02 E-value=1.1e+02 Score=29.54 Aligned_cols=141 Identities=13% Similarity=0.239 Sum_probs=99.4
Q ss_pred HHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHhccCcch-------hh
Q 024314 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEV-------AL 144 (269)
Q Consensus 72 qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~di-------al 144 (269)
.++.-+..++.+..+......=.||.-=|+-..|..++-+. +..+.+||..|-+-+.....+-=..+- -=
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h---k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH---KKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS---HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 35555666667777888888889999999999999999654 346789999986655555444322222 22
Q ss_pred hhhHHHHHHhhhHHHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhc-ch-hhHHHHHHhhHHHHHH
Q 024314 145 HCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTK-HL-TVVSEYLTAHYDEFFD 215 (269)
Q Consensus 145 ~~G~mLREcik~e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~-Hk-~lvaefl~~Nyd~Ff~ 215 (269)
..|.+|-+=.-++.+.+|+=..+.+.-+...+..++=-|..+||..||-...+ || +-|.+.|..|=++...
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~ 304 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLR 304 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 35666666666778888887777888777888888888999999999987764 33 5677999999665443
No 12
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=67.97 E-value=28 Score=29.82 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=56.9
Q ss_pred hHHHHhhhccCCCchhhhchHHHHHHHHhc-chhhHHHHHHhhHHHHHHHHHhhhcC-----CCccchhchhhhhHHhhc
Q 024314 168 SFELFFKFVELPTFDVASDAFSTFKDLLTK-HLTVVSEYLTAHYDEFFDLYEKLLTS-----SNYVTRRQSLKLLSEFLL 241 (269)
Q Consensus 168 ~f~~fF~yv~~~~FeiasDAf~TfkelLt~-Hk~lvaefl~~Nyd~Ff~~yn~Ll~s-----~NYVTkRQSLKLLgelLl 241 (269)
.|+.+..-+.-++=+|++-|-.-|.++..+ ++..+ .+++-..+..++.--+. .+.-.+++-.+.|-+.+-
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 458899999999999999999999999987 66555 44445555555554443 344455666666666666
Q ss_pred -CCCCHHHHHHhh
Q 024314 242 -EPPNSHIMKRYI 253 (269)
Q Consensus 242 -dr~N~~vM~rYi 253 (269)
|+..+++..|..
T Consensus 140 ~d~~~~~l~~kl~ 152 (178)
T PF12717_consen 140 KDKQKESLVEKLC 152 (178)
T ss_pred cHHHHHHHHHHHH
Confidence 666666665554
No 13
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.17 E-value=63 Score=33.21 Aligned_cols=137 Identities=14% Similarity=0.180 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccchh
Q 024314 41 KAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120 (269)
Q Consensus 41 k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v 120 (269)
+.-.|..-.++.|-. |+ +++ ++.++..++++.|+..|..=||..||.++=..+|+. .++..--+
T Consensus 337 ~ikkEAcW~iSNItA---G~------~~q----iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t---s~g~~~qi 400 (514)
T KOG0166|consen 337 SIKKEACWTISNITA---GN------QEQ----IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT---SSGTPEQI 400 (514)
T ss_pred hHHHHHHHHHHHhhc---CC------HHH----HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc---ccCCHHHH
Confidence 344566666665544 33 233 456777799999999999999999999999999997 33333346
Q ss_pred hhhhccHHHHHHHHHhcc--Ccchhh----------hhhHHHHHHhhhHHHHHHHhcchhHHHHhhhccCCCchhhhchH
Q 024314 121 QFIENHFELLDFLVVCYD--NKEVAL----------HCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAF 188 (269)
Q Consensus 121 ~Yl~~~peil~~L~~gY~--~~dial----------~~G~mLREcik~e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf 188 (269)
.||+++. ++.-++.-.. ++++.. -.|.+..+-=. +.++.+|=+.+...++-..=...|=||..-|+
T Consensus 401 ~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~ 478 (514)
T KOG0166|consen 401 KYLVEQG-IIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAY 478 (514)
T ss_pred HHHHHcC-CchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHH
Confidence 6776654 3333333222 222222 22222221111 45566665556666654444455556666665
Q ss_pred HHHHHHH
Q 024314 189 STFKDLL 195 (269)
Q Consensus 189 ~TfkelL 195 (269)
...-..+
T Consensus 479 ~II~~yf 485 (514)
T KOG0166|consen 479 KIIDTYF 485 (514)
T ss_pred HHHHHhc
Confidence 5444433
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=65.22 E-value=1.1e+02 Score=36.70 Aligned_cols=178 Identities=13% Similarity=0.061 Sum_probs=111.7
Q ss_pred HHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCcc-chhhhhhc-cHHHHHHHHHhccCcchhhhhhHHHHHHh
Q 024314 77 VCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CCVQFIEN-HFELLDFLVVCYDNKEVALHCGIMLRECI 154 (269)
Q Consensus 77 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~-p~v~Yl~~-~peil~~L~~gY~~~dial~~G~mLREci 154 (269)
+.+.+.+..|+.-|..=+++.++.++....++.+....... |.++.+.. .|++....+. ..|.|+-.+-
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~---------vLgnIlsl~~ 596 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLD---------VLGHVLSVAS 596 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHH---------HHHHHHhhcc
Confidence 33567888888888888899999998887777753221111 11221111 1222222221 2344444334
Q ss_pred hhHHHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhh
Q 024314 155 KFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLK 234 (269)
Q Consensus 155 k~e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLK 234 (269)
.++...........+..+.+.++.++=++--+|..++-.+.+.+++.....+..+ -+.-.-.||.+++--+++++-.
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ag---aIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE---IINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC---CHHHHHHHHhcCChHHHHHHHH
Confidence 4444444444455677777788888888889999999999998888777766554 3445567889999999999999
Q ss_pred hhHHhhcCCCCHHHHHHhhCChhhHHHHHHhccc
Q 024314 235 LLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKV 268 (269)
Q Consensus 235 LLgelLldr~N~~vM~rYis~~~NLkl~M~LLr~ 268 (269)
-|+.+...- .+--..++-...=++-.+.||++
T Consensus 674 AL~nL~~~~--~~~q~~~~v~~GaV~pL~~LL~~ 705 (2102)
T PLN03200 674 ALAALSRSI--KENRKVSYAAEDAIKPLIKLAKS 705 (2102)
T ss_pred HHHHHHhCC--CHHHHHHHHHcCCHHHHHHHHhC
Confidence 999888522 22221233345567777777764
No 15
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=63.42 E-value=4.8 Score=29.47 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=16.8
Q ss_pred hhhhhhccHHHHHHHHHhc
Q 024314 119 CVQFIENHFELLDFLVVCY 137 (269)
Q Consensus 119 ~v~Yl~~~peil~~L~~gY 137 (269)
.|.||..|||++.-|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 4899999999999998773
No 16
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.83 E-value=1e+02 Score=33.59 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhh---cccCCccchhhhhhccHHHHHHHHHhccCcchh
Q 024314 67 ADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLK---QKVDSTYCCVQFIENHFELLDFLVVCYDNKEVA 143 (269)
Q Consensus 67 ~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr---~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dia 143 (269)
.|.+..|...+..+-+ +|-|+|++.=...+-| ..+|... =|-++..|=+-|.+||+.
T Consensus 21 aETI~kLcDRvessTL------------~eDRR~A~rgLKa~srkYR~~Vga~G--------mk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTL------------LEDRRDAVRGLKAFSRKYREEVGAQG--------MKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HhHHHHHHHHHhhccc------------hhhHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHhhccCCHHHH
Confidence 4667777777776655 4679988765555544 2222211 267888888888888854
Q ss_pred hhhhHHHHHHhhhHHHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcC
Q 024314 144 LHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTS 223 (269)
Q Consensus 144 l~~G~mLREcik~e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s 223 (269)
-.+=..+--.++|+. +-..+..++ .+.|-=.-|-|.++..+..+. ..-..++.
T Consensus 81 k~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~------------lll~~~e~ 133 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNIT------------LLLQSLEE 133 (970)
T ss_pred HHHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHH------------HHHHHHHh
Confidence 333332222222322 222345555 556665667777776654443 22233344
Q ss_pred CCccchhchhhhhHHhhcCCCCHHHHHHhhCChhhHHHHHHhccc
Q 024314 224 SNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKV 268 (269)
Q Consensus 224 ~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLkl~M~LLr~ 268 (269)
-++-.||-+++||..+|-.|. -++-..-+.+|--.--||-+|+|
T Consensus 134 ~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 134 FDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHHhh
Confidence 457789999999999999998 67778888899999999999886
No 17
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.55 E-value=3.5e+02 Score=31.09 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=119.2
Q ss_pred CCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhhC
Q 024314 11 PKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKL 90 (269)
Q Consensus 11 ~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l 90 (269)
|=|-.|+++.+++...-|..-+... .-.+-..-+++.| ++..+....|++- +|.-..|=+|+|+. .-
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l--~~~~~L~h~d~dv------rllvacCvseilRi---~a 82 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHL--IKDFLLKHKDKDV------RLLVACCVSEILRI---YA 82 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHH--hhHHHhcCCCcCh------hHHHHHHHHHHHHH---hC
Confidence 4456788887777655444321100 0122222233332 3444444444432 35555665666665 45
Q ss_pred CCCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHh--------c-------------------cCcchh
Q 024314 91 PILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC--------Y-------------------DNKEVA 143 (269)
Q Consensus 91 ~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--------Y-------------------~~~dia 143 (269)
|.+||+.- +...||.-++++.-|=.-+.--|.-+++.++..|... + .+|...
T Consensus 83 PeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v 161 (1266)
T KOG1525|consen 83 PEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKV 161 (1266)
T ss_pred CCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHH
Confidence 78888877 8889999999876543333344676777777766332 1 233444
Q ss_pred hhhhHHHHHHhh-----hHHHHHHHhcc----------------------------hhHHHHhhhccCCCchhhhchHHH
Q 024314 144 LHCGIMLRECIK-----FPSLARYILES----------------------------ASFELFFKFVELPTFDVASDAFST 190 (269)
Q Consensus 144 l~~G~mLREcik-----~e~la~~iL~~----------------------------~~f~~fF~yv~~~~FeiasDAf~T 190 (269)
.+.+.|++..|- +..+..++|++ +...+|+.-.=..-+-.-+.-...
T Consensus 162 ~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~ 241 (1266)
T KOG1525|consen 162 FNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIK 241 (1266)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhH
Confidence 445555555544 22233333322 123344432111112244555556
Q ss_pred HHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhcCCCC
Q 024314 191 FKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPN 245 (269)
Q Consensus 191 fkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N 245 (269)
+.+++-.|..++.+-|.. +..+...=|.|+|=-+|-++++|+|.++-+.+.
T Consensus 242 ~he~i~~L~~~~p~ll~~----vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~ 292 (1266)
T KOG1525|consen 242 YHELILELWRIAPQLLLA----VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS 292 (1266)
T ss_pred HHHHHHHHHHhhHHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh
Confidence 666666666666665554 233334446788888999999999999988764
No 18
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.15 E-value=45 Score=30.35 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=73.7
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh
Q 024314 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (269)
Q Consensus 1 Msflf~~~~r~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~ 80 (269)
|-=+|+++ +||.|.-... |+...++..+..-+++-.|.-.|++|+=.+|+.+=- .|..+.+.|=|-.+.+.
T Consensus 1 MnRiFG~~-k~k~p~psL~---dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~-----gpaq~~~KqrAlrVLkQ 71 (218)
T KOG1655|consen 1 MNRIFGRG-KPKEPPPSLQ---DAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRP-----GPAQNALKQRALRVLKQ 71 (218)
T ss_pred CcccccCC-CCCCCChhHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHHHHH
Confidence 45579887 4888776544 444445544443556667888999999999998733 35566666665554433
Q ss_pred --------cHHHHHHhhCCCCCh--hhhhhHHHHHHHHhh--ccc--CCccc-----------hhhhhhccHHHHHHHHH
Q 024314 81 --------DVLILLVHKLPILGW--EARKDLVHCWSILLK--QKV--DSTYC-----------CVQFIENHFELLDFLVV 135 (269)
Q Consensus 81 --------dll~~Li~~l~~L~f--E~RKdv~~If~~llr--~~~--~~~~p-----------~v~Yl~~~peil~~L~~ 135 (269)
|-|..=-.+|..-.| |+=||..+-.+++-- ..- ...-. ..+++...-||=..|-+
T Consensus 72 KK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr 151 (218)
T KOG1655|consen 72 KKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGR 151 (218)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223322233332222 455666555554431 000 00001 23455555666666677
Q ss_pred hccCcc
Q 024314 136 CYDNKE 141 (269)
Q Consensus 136 gY~~~d 141 (269)
-|..||
T Consensus 152 ~y~~pe 157 (218)
T KOG1655|consen 152 NYNTPD 157 (218)
T ss_pred ccCCCC
Confidence 788887
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=56.79 E-value=2.4e+02 Score=34.06 Aligned_cols=167 Identities=18% Similarity=0.111 Sum_probs=110.1
Q ss_pred HHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhccc-C-CccchhhhhhccHHHHHHHHHhccCcchh---hhh
Q 024314 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKV-D-STYCCVQFIENHFELLDFLVVCYDNKEVA---LHC 146 (269)
Q Consensus 72 qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~-~-~~~p~v~Yl~~~peil~~L~~gY~~~dia---l~~ 146 (269)
++...|...+.+..|+..|..=+.|+|++++....++-.... + .+...+-.---=|-++..|-.|- .+|.+ ..+
T Consensus 90 ~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gs-k~d~~L~~~Av 168 (2102)
T PLN03200 90 DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGN-KQDKVVEGLLT 168 (2102)
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCc-hhhHHHHHHHH
Confidence 344556667888889999988899999998777666653221 1 00000000000144444444432 23332 234
Q ss_pred hHHHHHHhhhHHHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCc
Q 024314 147 GIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNY 226 (269)
Q Consensus 147 G~mLREcik~e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NY 226 (269)
|.+..=|.-.|...+.++....+-.+.+.+..++-++...|...+-.+...+......-+..+ .+...-+||.+++.
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG---aVP~LV~LL~sg~~ 245 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAG---AVKQLLKLLGQGNE 245 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC---CHHHHHHHHccCCC
Confidence 555555665677888888888888999999999999999998888777766666555656554 46777789987665
Q ss_pred -cchhchhhhhHHhhcC
Q 024314 227 -VTRRQSLKLLSEFLLE 242 (269)
Q Consensus 227 -VTkRQSLKLLgelLld 242 (269)
..|.++.-.|+.|--+
T Consensus 246 ~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 246 VSVRAEAAGALEALSSQ 262 (2102)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 7799999999988753
No 20
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=55.36 E-value=50 Score=36.10 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=78.7
Q ss_pred HHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHh-----ccCcchhhhhhHHHH
Q 024314 77 VCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC-----YDNKEVALHCGIMLR 151 (269)
Q Consensus 77 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g-----Y~~~dial~~G~mLR 151 (269)
.++..++.+++. .+..-+= .++..++-+-|-.-+.++||+= ||++..|-.| |..--.+.+.=.-+|
T Consensus 85 ~IR~~l~~lii~-s~n~l~i---q~a~avs~IA~~DfPdeWpTL~-----~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 85 LIRDELFSLIIS-SSNQLQI---QNALAVSRIARLDFPDEWPTLV-----PDLLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred HHHHHHHHHHHc-ccchHHH---HHHHHHHHHHhccCcccchhHH-----HHHHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 445555555443 3433222 5566667676766667776532 2222222110 111111222222345
Q ss_pred HHhhhH------------HHHHHHhcchhHHHHhh---hccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Q 024314 152 ECIKFP------------SLARYILESASFELFFK---FVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDL 216 (269)
Q Consensus 152 Ecik~e------------~la~~iL~~~~f~~fF~---yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~ 216 (269)
.|.|.+ -++.+++.++.+|..-. +--++-|+|+=-+..-+.|+=--|.+ +|+++|.+.|.++
T Consensus 156 ~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~---eFfEd~l~~~m~~ 232 (947)
T COG5657 156 RLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIP---EFFEDNLDKFMEH 232 (947)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHH
Confidence 555543 25777888888888765 44466677754555555555555555 9999999999999
Q ss_pred HHhhhcCCCcc
Q 024314 217 YEKLLTSSNYV 227 (269)
Q Consensus 217 yn~Ll~s~NYV 227 (269)
+.++++-.|=+
T Consensus 233 F~klls~~~~~ 243 (947)
T COG5657 233 FCKLLSYSNPV 243 (947)
T ss_pred HHHHHhhcchh
Confidence 99998855533
No 21
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=52.96 E-value=1.4e+02 Score=25.09 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=59.7
Q ss_pred HHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHh-hhcCCC--ccchhchhh
Q 024314 158 SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEK-LLTSSN--YVTRRQSLK 234 (269)
Q Consensus 158 ~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~-Ll~s~N--YVTkRQSLK 234 (269)
.+.. ++.++.+--+.+.+..+.|.|..-+...|.-++.+++ .+|..-.+.|+..+-. ++++++ |=.|.-+|.
T Consensus 65 ~l~~-~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le 139 (168)
T PF12783_consen 65 SLIN-LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALE 139 (168)
T ss_pred HHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 4443 4444455555566666779999999999999997654 3555667899999886 888877 666667899
Q ss_pred hhHHhhcCCC
Q 024314 235 LLSEFLLEPP 244 (269)
Q Consensus 235 LLgelLldr~ 244 (269)
.+.++.-++.
T Consensus 140 ~l~~l~~~p~ 149 (168)
T PF12783_consen 140 ILRELCKDPQ 149 (168)
T ss_pred HHHHHHhChh
Confidence 9999886654
No 22
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=52.61 E-value=15 Score=29.33 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=32.9
Q ss_pred HHHHHhhHHHHHHHHHh-hhc---CCCccchhchhhhhHHhhc
Q 024314 203 SEYLTAHYDEFFDLYEK-LLT---SSNYVTRRQSLKLLSEFLL 241 (269)
Q Consensus 203 aefl~~Nyd~Ff~~yn~-Ll~---s~NYVTkRQSLKLLgelLl 241 (269)
++||..|+=..+..++. +.. +..|..|+++|+=+|+++-
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~ 44 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK 44 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH
Confidence 68999999777788875 444 6999999999999999985
No 23
>KOG4553 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.39 E-value=2.6e+02 Score=31.70 Aligned_cols=143 Identities=20% Similarity=0.301 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHH---------hhcHHHHHHhhCCCCChhhhhhHHHHHHHHhh
Q 024314 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVC---------KEDVLILLVHKLPILGWEARKDLVHCWSILLK 110 (269)
Q Consensus 40 ~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~---------~~dll~~Li~~l~~L~fE~RKdv~~If~~llr 110 (269)
-+...|+-+|++.|.- +...-|..++. ++-++..|=+.|-. .-.+|+.++..|-.+|+
T Consensus 483 s~~v~Elfdy~~fm~g------------~is~rLi~aviPLiK~S~~lRDalIlVLrKAMf~-~edtvrsAv~gvl~lLk 549 (1398)
T KOG4553|consen 483 SKLVDELFDYVCFMRG------------DISVRLIRAVIPLIKTSPQLRDALILVLRKAMFC-GEDTVRSAVPGVLILLK 549 (1398)
T ss_pred hHHHHHHHHHHHhccc------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc-chhhhhhhHHHHHHHHH
Confidence 3667899999999875 23333444321 12222233333333 56799999999999996
Q ss_pred -----cccC--Ccc--chhhhhhc--cHHHHHHHHHhccC--cchhhhhhHHHHHHhhhHHHHHHHhcchhHHHHhhhcc
Q 024314 111 -----QKVD--STY--CCVQFIEN--HFELLDFLVVCYDN--KEVALHCGIMLRECIKFPSLARYILESASFELFFKFVE 177 (269)
Q Consensus 111 -----~~~~--~~~--p~v~Yl~~--~peil~~L~~gY~~--~dial~~G~mLREcik~e~la~~iL~~~~f~~fF~yv~ 177 (269)
+..| +.+ -+.+.=.. +...... +..-.+ ....+-.-.|||-|+-.+.=.|..||+
T Consensus 550 ~~~kl~~~~~~~~~sSfcsQ~S~Sq~S~~tqn~-mgs~~n~~~tl~lEl~G~LrrCL~QQadvk~~LYd----------- 617 (1398)
T KOG4553|consen 550 SVSKLREDGGGGQFSSFCSQHSFSQFSTQTQNS-MGSKKNVDQTLGLELVGILRRCLWQQADVKIALYD----------- 617 (1398)
T ss_pred HHHHHhhhcCCCCcchhhhhhhhhhhhhhhhhh-cccccCccchhhHHHHHHHHHHHhhhhhHHHHHHH-----------
Confidence 2221 111 11221111 1111111 111234 456677778999999999999999998
Q ss_pred CCCchhhhchHHHHHHHHhcchhhHH---HHHHhhHHHHHHHHHh
Q 024314 178 LPTFDVASDAFSTFKDLLTKHLTVVS---EYLTAHYDEFFDLYEK 219 (269)
Q Consensus 178 ~~~FeiasDAf~TfkelLt~Hk~lva---efl~~Nyd~Ff~~yn~ 219 (269)
-|-++++...+++. ++|..|+-.||++=..
T Consensus 618 ------------gl~~lv~~ns~l~nhVLd~ilsHfr~Ffe~k~d 650 (1398)
T KOG4553|consen 618 ------------GLCELVTQNSTLLNHVLDMILSHFRMFFEWKKD 650 (1398)
T ss_pred ------------HHHHHHHhcchhhHHHHHHHHHHHHHccCCChh
Confidence 34467787787776 5556799999986543
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=50.42 E-value=2.5e+02 Score=27.32 Aligned_cols=117 Identities=16% Similarity=0.216 Sum_probs=70.3
Q ss_pred cCcchhhhhhHHHHHHhhhHHHHHHHhcchhHHHHhhhc-cCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Q 024314 138 DNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFV-ELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDL 216 (269)
Q Consensus 138 ~~~dial~~G~mLREcik~e~la~~iL~~~~f~~fF~yv-~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~ 216 (269)
+++.+-...=.+|-.++..+.... .+..+.+|+ +.+..++..++..++..+-.++ ...++|+++.
T Consensus 316 ~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~--------~~~~~~~v~~ 381 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF--------PPDAEWYVDT 381 (526)
T ss_dssp SSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH--------GSSHHHHHHH
T ss_pred CChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc--------CchHHHHHHH
Confidence 344444444444444443333332 466788888 6668888888887777766655 6678888888
Q ss_pred HHhhhcCCCccchhchhhhhHHhhcCCCCH-----HHHHHh---hCChhhHHHHHHhccc
Q 024314 217 YEKLLTSSNYVTRRQSLKLLSEFLLEPPNS-----HIMKRY---ILEVRFLKVMMTLLKV 268 (269)
Q Consensus 217 yn~Ll~s~NYVTkRQSLKLLgelLldr~N~-----~vM~rY---is~~~NLkl~M~LLr~ 268 (269)
.-+++..++..+...++--+.+++-+-... ..+.++ +.+++-++.+..++++
T Consensus 382 l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGE 441 (526)
T PF01602_consen 382 LLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGE 441 (526)
T ss_dssp HHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHH
T ss_pred HHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcc
Confidence 888888665555778888888877644332 223333 4555656666666654
No 25
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.44 E-value=73 Score=32.08 Aligned_cols=112 Identities=20% Similarity=0.300 Sum_probs=63.7
Q ss_pred CCCCChhhhhhHHHHHHHHhhcccC--CccchhhhhhccHHHHHHHHHhccCcchhhhhhHHH----HHHhhhHHHHHHH
Q 024314 90 LPILGWEARKDLVHCWSILLKQKVD--STYCCVQFIENHFELLDFLVVCYDNKEVALHCGIML----RECIKFPSLARYI 163 (269)
Q Consensus 90 l~~L~fE~RKdv~~If~~llr~~~~--~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mL----REcik~e~la~~i 163 (269)
+|.| .|+++++.+.++-=-... -.-||.+|...-|+.+-...-|-+..+..--...-+ -.=+-||+|- ..
T Consensus 6 fP~L---~~aEIv~~l~~~~i~~at~ei~~PTs~~~~~lYe~il~~~mgl~~~~l~~r~n~~~~~~EN~ei~~~sL~-~~ 81 (446)
T KOG4438|consen 6 FPRL---SVAEIVICLKDAQIASATEEILTPTSDYVSPLYEVILEYYMGLDEEELLQRDNEALEQLENPEIHAESLQ-FK 81 (446)
T ss_pred cCCC---CHHHHHHHHHhcCcccchhhccCCCcccchhHHHHHHHHHHhhhHHHHhhhhHHHHhcccCHHHHHHHHH-HH
Confidence 4455 567777766666532222 234889998887777666655543222111111000 0012244554 34
Q ss_pred hcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHh--hHHHH
Q 024314 164 LESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTA--HYDEF 213 (269)
Q Consensus 164 L~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~--Nyd~F 213 (269)
+.......|+.-+...+| +++||+..-..=..-||+. ||..|
T Consensus 82 ~l~ki~~~Fl~~i~v~dF--------~~~DLlkPes~Rtq~~LSavvNfa~f 125 (446)
T KOG4438|consen 82 LLCKILDMFLMNIGVLDF--------SFKDLLKPESSRTQRFLSAVVNFALF 125 (446)
T ss_pred HHHHHHHHHHHhcCcCCC--------chhhhcCccHHHHHHHHHHHHHHHHH
Confidence 444567788888999998 5679997666666667764 55444
No 26
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=46.20 E-value=71 Score=20.44 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=31.8
Q ss_pred HHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHh
Q 024314 73 LATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILL 109 (269)
Q Consensus 73 L~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~ll 109 (269)
-.+.+.+.+.+..|+..|..-+.+.++.++-...|+-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999988887764
No 27
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=45.47 E-value=34 Score=29.31 Aligned_cols=52 Identities=29% Similarity=0.404 Sum_probs=40.7
Q ss_pred hhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhcC
Q 024314 183 VASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLE 242 (269)
Q Consensus 183 iasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLld 242 (269)
|-+-|..++-|+..||+.+|-.|+ ...-+.|.+++=..|++++..|..|++.
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~--------~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYL--------PNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHH--------HHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 445677888899999988876554 3444677888888899999999999874
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=45.31 E-value=3.4e+02 Score=27.36 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=77.1
Q ss_pred HHHHHHHHhccCcc--hhhhhhHHHHHHhhhHHHHHHHhcchhHHHHhhhccCCCchhhhchHH------HHHHHHhcch
Q 024314 128 ELLDFLVVCYDNKE--VALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFS------TFKDLLTKHL 199 (269)
Q Consensus 128 eil~~L~~gY~~~d--ial~~G~mLREcik~e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~------TfkelLt~Hk 199 (269)
.+++.++..+++.| +-++|-.+|-+....+.-+++|.....|.++.+.+..+.-|-...++- -|-.+.+.++
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~ 281 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP 281 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh
Confidence 36677777777777 578999999999999999999999999999888887665554222232 2222222222
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhh
Q 024314 200 TVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (269)
Q Consensus 200 ~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (269)
.- +..-|..|......+++|++-.-+=-++--||-|=
T Consensus 282 ~~----v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 282 QE----VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HH----HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 22 23457788888888899988877777777777654
No 29
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=45.01 E-value=43 Score=28.76 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcH
Q 024314 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDV 82 (269)
Q Consensus 40 ~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~dl 82 (269)
++..+|+.|.|+.|-.-+-.+.=..|.-+...+|++++-+.|+
T Consensus 64 kr~~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 64 KRVVDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDY 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-H
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4567999999999988887655566677888888888877765
No 30
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=43.73 E-value=99 Score=32.50 Aligned_cols=217 Identities=17% Similarity=0.184 Sum_probs=107.4
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcH
Q 024314 4 SFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKA-MEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDV 82 (269)
Q Consensus 4 lf~~~~r~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~-~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~dl 82 (269)
||||. +-=-.=+|..+.|.|..=....+ ...+...| .=+++=.+.|+=.++..++|.+|+-=.+-.--+...-.|+
T Consensus 363 LFWKs--~DLf~Flv~~L~eyLp~s~~~~~-~q~~~qrADeL~~~i~i~qtL~lMFReTE~e~sRln~L~A~kg~l~~~L 439 (617)
T PF15087_consen 363 LFWKS--SDLFYFLVQTLHEYLPESRSKNG-LQNKSQRADELELCILIIQTLGLMFRETEVEPSRLNTLAAKKGALFSNL 439 (617)
T ss_pred HhcCC--hhHHHHHHHHHHHhcccCcCccc-cccccchHHHHHHHHHHHHHHHHHHhccccchhhHHHHHhhhhhhHHHH
Confidence 56666 34444568888887654221111 00000111 1134455566667778888888764332222223433445
Q ss_pred HHHHHhhCCCCC-----hhhhhhHHHHHHHHhhcccCCcc--chhhhhhccHHHHHHHH-Hh-----ccCcchhhhhhHH
Q 024314 83 LILLVHKLPILG-----WEARKDLVHCWSILLKQKVDSTY--CCVQFIENHFELLDFLV-VC-----YDNKEVALHCGIM 149 (269)
Q Consensus 83 l~~Li~~l~~L~-----fE~RKdv~~If~~llr~~~~~~~--p~v~Yl~~~peil~~L~-~g-----Y~~~dial~~G~m 149 (269)
|..|| +-|.++ |+. +-+++ -.-..+... -..+|+-+-..+|..++ -| ....+-.++.|-|
T Consensus 440 L~~Li-~~P~~p~~~~~~~~-~~~~~-----~~~~~d~elq~L~~EYtdaAtalLfEillv~~q~s~~~~~~~fl~i~Wi 512 (617)
T PF15087_consen 440 LVILI-CEPQIPKSCPPFDI-QLVAD-----SSMSFDAELQKLLLEYTDAATALLFEILLVFQQGSLGLGSDKFLAISWI 512 (617)
T ss_pred HHHHh-cCccccccCCcccc-ccccc-----cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCchhHHHH
Confidence 44433 334443 111 11100 000001110 01455544444443332 22 2245566777777
Q ss_pred HHHHhhhHHHHHHHhcchhHHHHhhhccCCC----------chhhhchHHHHHH---HHh--cchhhHHHHHHhhHHHHH
Q 024314 150 LRECIKFPSLARYILESASFELFFKFVELPT----------FDVASDAFSTFKD---LLT--KHLTVVSEYLTAHYDEFF 214 (269)
Q Consensus 150 LREcik~e~la~~iL~~~~f~~fF~yv~~~~----------FeiasDAf~Tfke---lLt--~Hk~lvaefl~~Nyd~Ff 214 (269)
+|..=-| |..-.|..|+-... +=-.+||.--|+- |.+ .|.+-.|+|+.+||.+=|
T Consensus 513 ~~~Lq~~----------p~~~~Fv~~~v~q~v~~LS~s~~~~LSp~qaVLlyQq~~iL~~cLq~s~~la~~ir~~yrEEF 582 (617)
T PF15087_consen 513 MRVLQSH----------PPLLSFVGRIVKQVVKVLSASQHEPLSPSQAVLLYQQFYILLSCLQYSKQLAEHIRNNYREEF 582 (617)
T ss_pred HHHHhcC----------CcHHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhe
Confidence 7743333 33444444433222 2234455444433 333 678899999999998866
Q ss_pred HHHHhh--hcC---CCccchhchhhhhHHhh
Q 024314 215 DLYEKL--LTS---SNYVTRRQSLKLLSEFL 240 (269)
Q Consensus 215 ~~yn~L--l~s---~NYVTkRQSLKLLgelL 240 (269)
.-|-+. ++. .-|=..+..++|++|+|
T Consensus 583 RYfI~~p~lekKLP~~YPItqpT~~Li~evl 613 (617)
T PF15087_consen 583 RYFIKMPCLEKKLPPCYPITQPTLQLIHEVL 613 (617)
T ss_pred eeeecchhhHhhCCCCCCCchHHHHHHHHHH
Confidence 555443 333 57888889999999987
No 31
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.85 E-value=3.2e+02 Score=30.10 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.8
Q ss_pred HHHHHhhHHHHHHHHHhhhcCCC
Q 024314 203 SEYLTAHYDEFFDLYEKLLTSSN 225 (269)
Q Consensus 203 aefl~~Nyd~Ff~~yn~Ll~s~N 225 (269)
-||+++|.+.|...|.++++.+|
T Consensus 225 PEFFEdnm~~wM~~F~k~l~~~~ 247 (960)
T KOG1992|consen 225 PEFFEDNMKTWMGAFHKLLTYDN 247 (960)
T ss_pred hHHHHhhHHHHHHHHHHHHhccC
Confidence 39999999999999999998765
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.01 E-value=1.4e+02 Score=27.67 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=49.6
Q ss_pred hHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhcCCCCHH
Q 024314 168 SFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSH 247 (269)
Q Consensus 168 ~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~ 247 (269)
.|..|++..+.+.=-|.-=|...+-.+++..+.--...-..-...|++.....+++++-=...-++..|++++-.+.+..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 45566666666655555555555656665433222211122235566666666665332222567889999985555444
Q ss_pred HHHHhhCChhhHHHHHHhc
Q 024314 248 IMKRYILEVRFLKVMMTLL 266 (269)
Q Consensus 248 vM~rYis~~~NLkl~M~LL 266 (269)
+ |+. .+.+..++.+|
T Consensus 186 ~---f~~-~~~v~~l~~iL 200 (312)
T PF03224_consen 186 V---FWK-SNGVSPLFDIL 200 (312)
T ss_dssp H---HHT-HHHHHHHHHHH
T ss_pred H---HHh-cCcHHHHHHHH
Confidence 4 555 77788877776
No 33
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=39.96 E-value=2.1e+02 Score=23.70 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=24.7
Q ss_pred HHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHh--hHHHHHHH
Q 024314 169 FELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTA--HYDEFFDL 216 (269)
Q Consensus 169 f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~--Nyd~Ff~~ 216 (269)
..+|++-+..+.| |++|++...++=+-.+|+. ||-+|.+.
T Consensus 90 ~~~~~~~~gv~DF--------~l~Dl~~P~~~R~~~~LSalINF~~Fre~ 131 (146)
T PF03800_consen 90 LQKFLKDCGVPDF--------SLSDLLKPDPKRTRRILSALINFARFREE 131 (146)
T ss_dssp HHHHHHHTT-------------HHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCC--------CHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666 7889998888888888886 88888775
No 34
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=38.25 E-value=45 Score=28.84 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=17.2
Q ss_pred HHHHHHhcchhHHHHhhhccCCCch
Q 024314 158 SLARYILESASFELFFKFVELPTFD 182 (269)
Q Consensus 158 ~la~~iL~~~~f~~fF~yv~~~~Fe 182 (269)
...+|+.+|+.|.++++|++.+.|.
T Consensus 23 i~~~Y~~~D~efq~~~~yl~s~~f~ 47 (179)
T PF06757_consen 23 IVQRYYLEDAEFQAAVRYLNSSEFK 47 (179)
T ss_pred HHHHHHHcCHHHHHHHHHHcChHHH
Confidence 4455677777777777777776654
No 35
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.16 E-value=45 Score=30.51 Aligned_cols=47 Identities=19% Similarity=0.474 Sum_probs=33.5
Q ss_pred hhHHHHHHhhhHHHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHH---HHHHhhHHHHHH
Q 024314 146 CGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVS---EYLTAHYDEFFD 215 (269)
Q Consensus 146 ~G~mLREcik~e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lva---efl~~Nyd~Ff~ 215 (269)
.=.+||-|+-+++-.|.+||.. |-+++++.+.++. ++|..|+..||+
T Consensus 35 Ilg~LRRCL~QQa~VR~~LY~g-----------------------l~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 35 ILGILRRCLTQQADVRLMLYEG-----------------------LYDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHHGGGGS-HHHHHHHHHH-----------------------HHHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHHhcChHHHHHHHHHH-----------------------HHHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 3457899999999999999983 3356777776666 666677776666
No 36
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=33.99 E-value=2.8e+02 Score=23.12 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=41.8
Q ss_pred CCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHh
Q 024314 178 LPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEF 239 (269)
Q Consensus 178 ~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgel 239 (269)
....++...+...+|.++..+.. ....++ ....+..+-..|.|+++=||.+++.+|+-+
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G-~~~v~~--~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYG-LEAVLS--HPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHH-HHHHHC--SSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHH-HHHHHc--CcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 35567777888888888877643 333333 234567788889999999999999999865
No 37
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.51 E-value=1.9e+02 Score=26.45 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=37.0
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh
Q 024314 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (269)
Q Consensus 1 Msflf~~~~r~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~ 80 (269)
|- +|+|+ +||+|+.|.-.-.|.+--.. -++.+.+.+-+=-|.+..||.. -+.-+..++.-+|..+.+.
T Consensus 1 m~-lFgk~---~tp~e~Lr~nqRal~~a~Re---leRer~~le~qeKklvaeIKk~-----AK~gq~~A~KimAkdLvRt 68 (224)
T KOG3230|consen 1 MD-LFGKK---KTPAELLRENQRALNKATRE---LERERQKLELQEKKLVAEIKKT-----AKQGQMDAVKIMAKDLVRT 68 (224)
T ss_pred CC-cccCC---CCHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----HHcccHHHHHHHHHHHHHH
Confidence 44 78887 99999999777777552221 1222333333334455555542 1223445555566655443
No 38
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=33.46 E-value=1.3e+02 Score=24.12 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc----HHHHHHhhC---CCCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHH
Q 024314 60 DGEVEPNADQVLQLATEVCKED----VLILLVHKL---PILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDF 132 (269)
Q Consensus 60 ~~e~ep~~e~~~qL~~ei~~~d----ll~~Li~~l---~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~ 132 (269)
+++..|.+....+|++..|+++ .+..|...| +.=.+-..-.+-++...|++.- ..-+++.+..+-++|..
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG---~~~~~~~~~~~~~~I~~ 90 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNG---SERFVDELRDHIDIIRE 90 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS----HHHHHHHHHTHHHHHG
T ss_pred CCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHhh
Confidence 4455788889999999988843 344444444 3333333333444444444322 11245556556666666
Q ss_pred HHHhccCcc-hhhhhhHHHHHHh
Q 024314 133 LVVCYDNKE-VALHCGIMLRECI 154 (269)
Q Consensus 133 L~~gY~~~d-ial~~G~mLREci 154 (269)
| ..|..+| -.-..|.-+|+-.
T Consensus 91 l-~~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 91 L-QDFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp G-GG---BBTTSTBHHHHHHHHH
T ss_pred c-ceeeccCCCCccHHHHHHHHH
Confidence 6 3343322 2344555566654
No 39
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.28 E-value=76 Score=22.87 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCccchhchhhhhHHhhcCCCCHHHHHHhhCChh
Q 024314 212 EFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVR 257 (269)
Q Consensus 212 ~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~ 257 (269)
+....+..++.++|..+|++++.-||.+= ++.-...+.+.+.+++
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~ 75 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDD 75 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-S
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCC
Confidence 56777778889999999999999999873 3444566666555543
No 40
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=32.04 E-value=1.3e+02 Score=25.77 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=50.1
Q ss_pred HHHHHHhcc-----CcchhhhhhHHHHHHhhhHHHHHHHh----cchhHHHHhhhccCCCchhhhchHHHHHHHHhcchh
Q 024314 130 LDFLVVCYD-----NKEVALHCGIMLRECIKFPSLARYIL----ESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLT 200 (269)
Q Consensus 130 l~~L~~gY~-----~~dial~~G~mLREcik~e~la~~iL----~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~ 200 (269)
+..|...|. ..+.--.|..++.|=-+.+.+|.-|= |=..+...-.-+..|++.|.+|+| .++|.+ =.
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F---~~~L~~-LD 105 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSF---KPMLSR-LD 105 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHH---HHHHHH-HH
Confidence 455555664 23444559999988888776666543 334455555566799999988876 567765 44
Q ss_pred hHHHHHHhh
Q 024314 201 VVSEYLTAH 209 (269)
Q Consensus 201 lvaefl~~N 209 (269)
-+=+|+..|
T Consensus 106 ~cl~Fl~~h 114 (157)
T PF04136_consen 106 ECLEFLEEH 114 (157)
T ss_pred HHHHHHHHh
Confidence 555888776
No 41
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=31.37 E-value=99 Score=24.10 Aligned_cols=43 Identities=14% Similarity=0.387 Sum_probs=32.0
Q ss_pred hhhHHHHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHHH
Q 024314 154 IKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKH-LTVVSEYLTAHYDEFFDLYE 218 (269)
Q Consensus 154 ik~e~la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~H-k~lvaefl~~Nyd~Ff~~yn 218 (269)
-++|.+.+-+|.||.+..| |..| ..+..+-+..++.+|.+-+.
T Consensus 19 ~~~~~l~~~vl~dp~V~~F----------------------l~~h~~eLt~~~i~rsl~kLyEy~~ 62 (94)
T PF07319_consen 19 ERYEQLKQEVLSDPEVQAF----------------------LQEHQPELTQEMIERSLSKLYEYVS 62 (94)
T ss_dssp HHHHHHHHHHTT-HHHHHH----------------------HHHSTTT--HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHH----------------------HHHhHHhcCHHHHHHHHHHHHHHHH
Confidence 3688999999999998877 7888 67888888888888776544
No 42
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=30.21 E-value=2.2e+02 Score=27.85 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHH
Q 024314 63 VEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSIL 108 (269)
Q Consensus 63 ~ep~~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~l 108 (269)
-.|++...++||+.-|+..-+..++..|.+===++.|.-.+||..|
T Consensus 35 wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaL 80 (336)
T KOG2056|consen 35 WGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKAL 80 (336)
T ss_pred CCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 3588999999999999997777777777654333556666666655
No 43
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.67 E-value=3.6e+02 Score=31.11 Aligned_cols=182 Identities=20% Similarity=0.272 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCcc--
Q 024314 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-- 117 (269)
Q Consensus 40 ~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~-- 117 (269)
.-.|+++-|++.+.=++.... +-...+-|+ +.+-.+.+.. .+.-+.+-+...+|+.++.+-..++.
T Consensus 341 ~liqd~~fk~l~~~~~~~~k~----s~~~~~Lql----~~s~vl~l~~----~lr~~~k~qle~~Fs~l~~~~~~~~~~~ 408 (1386)
T KOG0928|consen 341 RLIQDPLFKHLIEFLQIPTKM----SLERLVLQL----FCSLVLNLYL----ALREQLKLQLEAFFSILLLRGTAEEYGP 408 (1386)
T ss_pred HHhccHHHHHHHHHHhhcccc----hhhHHHHHH----HHHHHHHHhh----hhhhhHHHHHHHHHHHHHHHHHhcccCC
Confidence 446788888888776665222 111122222 2222222222 25666777888899998875543322
Q ss_pred ch------hhh---hhccHHHHHHHHHhccCcchhhhhhHHHHHHhhh-----------------HHHH--------HHH
Q 024314 118 CC------VQF---IENHFELLDFLVVCYDNKEVALHCGIMLRECIKF-----------------PSLA--------RYI 163 (269)
Q Consensus 118 p~------v~Y---l~~~peil~~L~~gY~~~dial~~G~mLREcik~-----------------e~la--------~~i 163 (269)
|. ++= +++.|-.+..+ |-|-|+-+.|++|--|.+|. ++++ ..+
T Consensus 409 ~~~~~e~ale~lv~~~R~p~F~~e~---yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~l~l~~v~~l~e~~ 485 (1386)
T KOG0928|consen 409 PYEQQEVALEALVLLCRIPSFLTEM---YVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILPLDLEGVLGLAENM 485 (1386)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHH---HHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccchHHHHHHHHHHHH
Confidence 21 222 22234444333 55666777777776666551 1111 111
Q ss_pred hcc-------------hhHHHHhhhcc--CCCchhhhchHH----------HHHHHHh--cchhhHHHHHHhhHHHHHHH
Q 024314 164 LES-------------ASFELFFKFVE--LPTFDVASDAFS----------TFKDLLT--KHLTVVSEYLTAHYDEFFDL 216 (269)
Q Consensus 164 L~~-------------~~f~~fF~yv~--~~~FeiasDAf~----------TfkelLt--~Hk~lvaefl~~Nyd~Ff~~ 216 (269)
-.. ..+|..|.-.. ..-|.+.++.|. +-+-++. -.++.||+||..|
T Consensus 486 ~~~l~~~d~~ef~~~k~e~~v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n------- 558 (1386)
T KOG0928|consen 486 IDELQDSDREEFWTDKCEVWVLFIRSRKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYN------- 558 (1386)
T ss_pred HhhccccCcCccccCCcchhhhhhccchhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhC-------
Confidence 110 02333332222 233444444432 1222333 2345555555544
Q ss_pred HHhhhcCCCccchhchhhhhHHhhcCCCCHHHHHHhhCC
Q 024314 217 YEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILE 255 (269)
Q Consensus 217 yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~ 255 (269)
-|-.-|.+|++|-||.|.++...||+-
T Consensus 559 ------------~rLdKk~iGdfLc~~k~~~vLn~Fi~t 585 (1386)
T KOG0928|consen 559 ------------PRLDKKTIGDFLCDPKNVSVLNEFIGT 585 (1386)
T ss_pred ------------ccccHHHHHHHhcCcchHHHHHHHHHh
Confidence 688899999999999999999999874
No 44
>PHA02800 hypothetical protein; Provisional
Probab=28.28 E-value=3.3e+02 Score=23.84 Aligned_cols=89 Identities=19% Similarity=0.316 Sum_probs=48.9
Q ss_pred HHhccCcchhhhhhHHHHHHhhhHHHHHHHhcchhHHHHhh-hccC-----CCch----hhhchHHHHHHHHhcchhhHH
Q 024314 134 VVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFK-FVEL-----PTFD----VASDAFSTFKDLLTKHLTVVS 203 (269)
Q Consensus 134 ~~gY~~~dial~~G~mLREcik~e~la~~iL~~~~f~~fF~-yv~~-----~~Fe----iasDAf~TfkelLt~Hk~lva 203 (269)
-+|+.++ +-=.||.+..|..|++.+|+.-.....+...-. +.++ +.-+ ---|-....|+++.---.+..
T Consensus 44 WR~ng~~-~~~~cGKIFKELmKyD~lAkk~~~~~d~~~~KNM~l~~Dk~~syvLni~e~~~~D~i~~~Ke~IG~~AILse 122 (161)
T PHA02800 44 WRFNGGK-VDENTGKIFKEFFKYDTLAKWRFSKRDFEQCKNMLLENDKNTSYVLDVPKPEKNDPLLNLKELIGFLAILSE 122 (161)
T ss_pred hhcCCCh-hhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhccccchhccchhhccccHHHHHHHHHHHHHHHHH
Confidence 3454444 555999999999999999997753333311111 1111 1111 012445556666654333333
Q ss_pred HH-HHhhHHHHHHHHHhhhcC
Q 024314 204 EY-LTAHYDEFFDLYEKLLTS 223 (269)
Q Consensus 204 ef-l~~Nyd~Ff~~yn~Ll~s 223 (269)
|+ +..||+..|...|.+-..
T Consensus 123 eIk~D~~F~~lFn~l~~~~~~ 143 (161)
T PHA02800 123 EIKKDTKFFALFNIMNSLFKH 143 (161)
T ss_pred HhhhhhhHHHHHHHHHHHHHH
Confidence 44 456666666666665443
No 45
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=28.05 E-value=1.3e+02 Score=24.86 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=54.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhh--cc--cCCccchhhhhhccHHHHHHHHHh
Q 024314 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLK--QK--VDSTYCCVQFIENHFELLDFLVVC 136 (269)
Q Consensus 61 ~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr--~~--~~~~~p~v~Yl~~~peil~~L~~g 136 (269)
+.-.|++...+++|+..|+.+-+..+...|.+===+..|.-.+||.+|.= += .|+. -+|+.+..|-.+|..| ..
T Consensus 13 d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse-~vv~~~r~~~~~i~~L-~~ 90 (123)
T cd03571 13 DPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSE-RVVDDARENLYIIRTL-KD 90 (123)
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCH-HHHHHHHHhHHHHHhh-cc
Confidence 34678889999999998887655444433322111126777777776641 11 1211 2456666666677777 44
Q ss_pred ccCcc-hhhhhhHHHHHHhhhHHHHH
Q 024314 137 YDNKE-VALHCGIMLRECIKFPSLAR 161 (269)
Q Consensus 137 Y~~~d-ial~~G~mLREcik~e~la~ 161 (269)
|...| -.--.|.-+|+-. +.++.
T Consensus 91 F~~~d~~g~d~G~~VR~ka--~~i~~ 114 (123)
T cd03571 91 FQYIDENGKDQGINVREKA--KEILE 114 (123)
T ss_pred ceeeCCCCCchhHHHHHHH--HHHHH
Confidence 44322 2335777777654 44444
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=27.93 E-value=5.7e+02 Score=24.82 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=16.4
Q ss_pred HHhhhccCCCchhhhchHHHHHHH
Q 024314 171 LFFKFVELPTFDVASDAFSTFKDL 194 (269)
Q Consensus 171 ~fF~yv~~~~FeiasDAf~Tfkel 194 (269)
.+.+.+..++-.|.+.|...+.++
T Consensus 156 ~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 156 KLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHhhhccCCcchhHHHHHHHHHHH
Confidence 333445666777777888877777
No 47
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=27.05 E-value=84 Score=27.74 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcC
Q 024314 10 RPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSG 59 (269)
Q Consensus 10 r~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G 59 (269)
|+|.|.-+=+.++|.+.++...+. +=.-+.+....+|++..-.+|=+|
T Consensus 122 RqR~psaYn~f~k~ei~rik~~~p--~ishkeaFs~aAknW~h~phihfg 169 (170)
T PF04690_consen 122 RQRVPSAYNRFMKEEIQRIKAENP--DISHKEAFSAAAKNWAHFPHIHFG 169 (170)
T ss_pred cCCCchhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhhhhCcccccC
Confidence 689999999999999999986442 112367888999999998888766
No 48
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.05 E-value=8.6e+02 Score=27.93 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=84.9
Q ss_pred hcHHHHHHhhCCCCChhhhhh--HHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHh--cc-CcchhhhhhHHHHHHh
Q 024314 80 EDVLILLVHKLPILGWEARKD--LVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC--YD-NKEVALHCGIMLRECI 154 (269)
Q Consensus 80 ~dll~~Li~~l~~L~fE~RKd--v~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Y~-~~dial~~G~mLREci 154 (269)
..++..+|..++..++.. || ...+|++.|.+- ..+.| .-...+-.++.-|+.| |. ...+-=.||++.-+-+
T Consensus 269 ~sl~~~Iir~I~~~~~~~-~d~~g~k~v~~fL~el-S~~~P--~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l 344 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNE-KDCAGPKIVGNFLVEL-SERVP--KLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASEL 344 (1251)
T ss_pred HHHHHHHHHHhcccchhc-ccccchhhHHHHHHHH-HHHhH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 345566666666665555 33 234445544322 11222 1122222233333332 21 1223334555555555
Q ss_pred hhHHHHHHH--hcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhch
Q 024314 155 KFPSLARYI--LESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQS 232 (269)
Q Consensus 155 k~e~la~~i--L~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQS 232 (269)
+.|.+-... +.++-..-+-+...--++-|-|-+.+.|..+.+.|..-.-- ..++...--.=+++.+=+.||-+
T Consensus 345 ~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~-----~~eV~~la~grl~DkSslVRk~A 419 (1251)
T KOG0414|consen 345 RDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGS-----RTEVLELAIGRLEDKSSLVRKNA 419 (1251)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccH-----HHHHHHHHhcccccccHHHHHHH
Confidence 543322111 01112233334566777888899999999999988543221 22333333344778899999999
Q ss_pred hhhhHHhhcCCCCHHHHH
Q 024314 233 LKLLSEFLLEPPNSHIMK 250 (269)
Q Consensus 233 LKLLgelLldr~N~~vM~ 250 (269)
++|+.-+| +|+=|..+.
T Consensus 420 i~Ll~~~L-~~~Pfs~~~ 436 (1251)
T KOG0414|consen 420 IQLLSSLL-DRHPFSSEL 436 (1251)
T ss_pred HHHHHHHH-hcCCchhhh
Confidence 99999987 455565544
No 49
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.02 E-value=9.7e+02 Score=26.91 Aligned_cols=198 Identities=11% Similarity=0.099 Sum_probs=94.3
Q ss_pred hhhhhcCCCCCCCCH--HHHHHHHHHHHhhcHHHHHHhhC--CCCChhhhhhHHHHHHHHhhcccCCc-cchhhh-----
Q 024314 53 MRCMLSGDGEVEPNA--DQVLQLATEVCKEDVLILLVHKL--PILGWEARKDLVHCWSILLKQKVDST-YCCVQF----- 122 (269)
Q Consensus 53 mK~il~G~~e~ep~~--e~~~qL~~ei~~~dll~~Li~~l--~~L~fE~RKdv~~If~~llr~~~~~~-~p~v~Y----- 122 (269)
+.+++-|+-+++|.. .+-+||.+---..+++.-+++-. ...|+-.|..++.-|.|...++-.++ .|...+
T Consensus 6 l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~ 85 (1010)
T KOG1991|consen 6 LLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEE 85 (1010)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChH
Confidence 334444444443332 23334444433344444433322 45677777777777888776553333 222111
Q ss_pred --hhccHHHHHHHHHhccCcchhhhhhHHHHHHhhhHHHHHHHhcc---hhHHHHhhhc----cCCCchhhhchHHHHHH
Q 024314 123 --IENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILES---ASFELFFKFV----ELPTFDVASDAFSTFKD 193 (269)
Q Consensus 123 --l~~~peil~~L~~gY~~~dial~~G~mLREcik~e~la~~iL~~---~~f~~fF~yv----~~~~FeiasDAf~Tfke 193 (269)
-.=+..|+++++++.+. +-...|..| +.|++. +..|.+++++ +++.=-.-=-|.-.+.+
T Consensus 86 dk~~irenIl~~iv~~p~~--iRvql~~~l----------~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~q 153 (1010)
T KOG1991|consen 86 DKAVIRENILETIVQVPEL--IRVQLTACL----------NTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQ 153 (1010)
T ss_pred HHHHHHHHHHHHHHhCchH--HHHHHHHHH----------HHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 11135567777766221 111122222 234433 2445666554 33322222235566666
Q ss_pred HHhcch-------hhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhc--CCCCHHHHHHhhCChhhHHHHHH
Q 024314 194 LLTKHL-------TVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL--EPPNSHIMKRYILEVRFLKVMMT 264 (269)
Q Consensus 194 lLt~Hk-------~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLl--dr~N~~vM~rYis~~~NLkl~M~ 264 (269)
|...|+ ....+-+..=+...-+..++|+..+|| ||.+++--+|- --..+--.-++..+++..---|+
T Consensus 154 L~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~ 229 (1010)
T KOG1991|consen 154 LFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWME 229 (1010)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHH
Confidence 666665 112222222234444566789999988 66655544432 11122223345666666666666
Q ss_pred hc
Q 024314 265 LL 266 (269)
Q Consensus 265 LL 266 (269)
|.
T Consensus 230 l~ 231 (1010)
T KOG1991|consen 230 LF 231 (1010)
T ss_pred HH
Confidence 54
No 50
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=24.68 E-value=70 Score=19.48 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.5
Q ss_pred HHHHhhhcCCCccchhchhhhhHHhh
Q 024314 215 DLYEKLLTSSNYVTRRQSLKLLSEFL 240 (269)
Q Consensus 215 ~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (269)
..+-++++++++-.|..+.+-||++.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 34568899999999999999999875
No 51
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=24.65 E-value=2.6e+02 Score=21.37 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=44.8
Q ss_pred cchhHHHHhhhccCCCchhhhchHHHHHHHHhcch-hhHHHHHHhhHHHHHHHHHhhhcCCCcc-chhchhhhhHHhhcC
Q 024314 165 ESASFELFFKFVELPTFDVASDAFSTFKDLLTKHL-TVVSEYLTAHYDEFFDLYEKLLTSSNYV-TRRQSLKLLSEFLLE 242 (269)
Q Consensus 165 ~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk-~lvaefl~~Nyd~Ff~~yn~Ll~s~NYV-TkRQSLKLLgelLld 242 (269)
.+..|..|.+-+....|| +|-...++.+..+|. -.+++ .-+++..=.|- .|-+.+|++.--+.|
T Consensus 6 ~~~~f~~~~~~lk~~~fd--~dkl~~l~~~~~~~~~~T~~Q------------v~~il~~f~fd~~kl~~lk~l~p~i~D 71 (95)
T PF14771_consen 6 SDNDFEQFLEQLKKESFD--SDKLKVLEAAAKTNNCFTCAQ------------VKQILSLFSFDNDKLKALKLLYPYIVD 71 (95)
T ss_pred CHHHHHHHHHHHHcCCCc--HHHHHHHHHHHhcCCceeHHH------------HHHHHHHcCCCHHHHHHHHHHhhhccC
Confidence 344566666666655554 566666666665544 22222 22233332232 277888888888888
Q ss_pred CCCHHHHHHhhC
Q 024314 243 PPNSHIMKRYIL 254 (269)
Q Consensus 243 r~N~~vM~rYis 254 (269)
|.|+.....-.+
T Consensus 72 ~~n~~~i~~~f~ 83 (95)
T PF14771_consen 72 PQNYYTIIDAFS 83 (95)
T ss_pred HHHHHHHHHHhc
Confidence 888888776554
No 52
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.64 E-value=4.1e+02 Score=22.06 Aligned_cols=89 Identities=11% Similarity=0.009 Sum_probs=59.7
Q ss_pred CCCCH-HHHHHHHHHHHhh-----cHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHh
Q 024314 63 VEPNA-DQVLQLATEVCKE-----DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC 136 (269)
Q Consensus 63 ~ep~~-e~~~qL~~ei~~~-----dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g 136 (269)
.+|.| -...+||+..+.+ +++..|...|.+=+--.+-.+-.|...+.+.- +..++.++..|..++..+...
T Consensus 14 ~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G---~~~f~~~~~~~~~~Ik~~~~f 90 (122)
T cd03572 14 DEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG---NSDFKRELQRNSAQIRECANY 90 (122)
T ss_pred CCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC---CHHHHHHHHHhHHHHHHHHHc
Confidence 33444 4556777777765 46667777777766666667778888888653 335788899999999997553
Q ss_pred ccCcc--hhhhhhHHHHHHh
Q 024314 137 YDNKE--VALHCGIMLRECI 154 (269)
Q Consensus 137 Y~~~d--ial~~G~mLREci 154 (269)
-.-|| -.-.-|..+|+-.
T Consensus 91 ~g~~Dp~~Gd~~~~~VR~~A 110 (122)
T cd03572 91 KGPPDPLKGDSLNEKVREEA 110 (122)
T ss_pred CCCCCcccCcchhHHHHHHH
Confidence 32233 4456677788765
No 53
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=24.19 E-value=4.8e+02 Score=28.64 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=61.0
Q ss_pred hhhHHHHHHhhhHHHHHHHhcc--hhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhc
Q 024314 145 HCGIMLRECIKFPSLARYILES--ASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLT 222 (269)
Q Consensus 145 ~~G~mLREcik~e~la~~iL~~--~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~ 222 (269)
.||++.-+.++.++.....=.. ..+.-+-+...-.+|=+-+-|.+.+..++....+.+.. -.+|...--.=++
T Consensus 322 icaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~-----r~ev~~lv~r~lq 396 (1128)
T COG5098 322 ICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR-----RHEVIRLVGRRLQ 396 (1128)
T ss_pred HHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch-----HHHHHHHHHHHhh
Confidence 4555555555555322211000 11223334556778888888888888888755444331 1245555555566
Q ss_pred CCCccchhchhhhhHHhhcCCCCHHHHH
Q 024314 223 SSNYVTRRQSLKLLSEFLLEPPNSHIMK 250 (269)
Q Consensus 223 s~NYVTkRQSLKLLgelLldr~N~~vM~ 250 (269)
.-.-|.||-|+||++.||+ ||=|.+|-
T Consensus 397 Drss~VRrnaikl~SkLL~-~HPF~~~h 423 (1128)
T COG5098 397 DRSSVVRRNAIKLCSKLLM-RHPFASEH 423 (1128)
T ss_pred hhhHHHHHHHHHHHHHHHh-cCChhhhc
Confidence 6778899999999999986 66677765
No 54
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=24.11 E-value=58 Score=29.40 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=56.4
Q ss_pred HhhhhhcCCCCCCCCH-HHHHHHHHHHHhhcHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCC---ccchhhhhhc-c
Q 024314 52 TMRCMLSGDGEVEPNA-DQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDS---TYCCVQFIEN-H 126 (269)
Q Consensus 52 ~mK~il~G~~e~ep~~-e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~---~~p~v~Yl~~-~ 126 (269)
+.+.|++...|++.-. .-|.-.---||++|=+..+ ++|.+-.+|--.||+++.. ...+.+-|-. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyr~d~v~~i----------~~k~~~il~~~al~~~~~~~~~~~~~~~~LSpRE 138 (198)
T PRK15201 69 QLRVIICNKCDKEKLMFRPCLYMLPHIYREDDVEEI----------TRKMILILHKRALRHSVPSGICHYCTTRHFSVTE 138 (198)
T ss_pred eeEEEEeccccchhhhhchhHhhcchhhccccHHHH----------HHHHHHHHHHHHHHhhCCchhccccCCCCCCHHH
Confidence 4566777776665331 1122333346777665554 5788888888899988765 2222333444 4
Q ss_pred HHHHHHHHHhccCcchhhhhhH
Q 024314 127 FELLDFLVVCYDNKEVALHCGI 148 (269)
Q Consensus 127 peil~~L~~gY~~~dial~~G~ 148 (269)
-+|+..+..|+.+.+||-..|.
T Consensus 139 rEVLrLLAqGkTnKEIAe~L~I 160 (198)
T PRK15201 139 RHLLKLIASGYHLSETAALLSL 160 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHhCC
Confidence 8999999999999998876553
No 55
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.66 E-value=3.2e+02 Score=25.22 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHHHHhhhh
Q 024314 11 PKTPLEVVKATKVSLMALDIKTV-VEVKALEKAMEEIEKNFVTMRCM 56 (269)
Q Consensus 11 ~ktP~e~Vr~~~e~l~~l~~~~~-~~~~~~~k~~ee~~K~L~~mK~i 56 (269)
|+.-..+|+.+.+.|.+++.... .-.++.+++.+++...-..++..
T Consensus 127 p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~ 173 (286)
T cd01019 127 PENAAEVAQAVAEKLSALDPDNAATYAANLEAFNARLAELDATIKER 173 (286)
T ss_pred HHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999886442 11234455555555444444443
No 56
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=23.11 E-value=2.1e+02 Score=24.84 Aligned_cols=33 Identities=9% Similarity=0.351 Sum_probs=11.9
Q ss_pred hhhc--hHHHHHHHHhcchhhHHHHHHhhHHHHHH
Q 024314 183 VASD--AFSTFKDLLTKHLTVVSEYLTAHYDEFFD 215 (269)
Q Consensus 183 iasD--Af~TfkelLt~Hk~lvaefl~~Nyd~Ff~ 215 (269)
++.| +..++-+++..+++++...-+.+.+.|++
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ 149 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIE 149 (207)
T ss_dssp H-TTHHHHHHHHHHHTT------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHH
Confidence 4555 88899999999999999987777666665
No 57
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.21 E-value=2.1e+02 Score=30.28 Aligned_cols=72 Identities=24% Similarity=0.396 Sum_probs=55.2
Q ss_pred hHHHHhhhccCCCchhhhchHHHHHHHHhcch------hhHHHHHHh---------------hHHHHHHHHHhhhcCCCc
Q 024314 168 SFELFFKFVELPTFDVASDAFSTFKDLLTKHL------TVVSEYLTA---------------HYDEFFDLYEKLLTSSNY 226 (269)
Q Consensus 168 ~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk------~lvaefl~~---------------Nyd~Ff~~yn~Ll~s~NY 226 (269)
.+..+|.+++.+.=.+.=|+-+-++|+++.-+ .+|--|++. |--.||...|..+..+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~- 83 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPS- 83 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCch-
Confidence 46778888888888888888899999888653 233344432 33569999999888775
Q ss_pred cchhchhhhhHHhhc
Q 024314 227 VTRRQSLKLLSEFLL 241 (269)
Q Consensus 227 VTkRQSLKLLgelLl 241 (269)
+|-++|-|||.++-
T Consensus 84 -~Rl~~L~Ll~~~v~ 97 (668)
T PF04388_consen 84 -YRLQALTLLGHFVR 97 (668)
T ss_pred -hHHHHHHHHHHHHh
Confidence 68899999999986
No 58
>PF02582 DUF155: Uncharacterised ACR, YagE family COG1723; InterPro: IPR003734 This entry describes proteins of unknown function.
Probab=22.06 E-value=1.1e+02 Score=26.33 Aligned_cols=54 Identities=15% Similarity=0.312 Sum_probs=40.5
Q ss_pred HHHHhhHHHHHHHHHhh---hcC-CC-ccchhchhhhhHHhhcCCCCHHHHHHhhCChh
Q 024314 204 EYLTAHYDEFFDLYEKL---LTS-SN-YVTRRQSLKLLSEFLLEPPNSHIMKRYILEVR 257 (269)
Q Consensus 204 efl~~Nyd~Ff~~yn~L---l~s-~N-YVTkRQSLKLLgelLldr~N~~vM~rYis~~~ 257 (269)
++++..-+..++....+ |++ +. -++|++-+|+.|+++.-|++.+.-....+.||
T Consensus 87 ~~~E~~v~~~l~~~~~i~~~L~~~G~~~~~~k~l~k~~G~l~~~r~~i~l~~~ilD~Pe 145 (175)
T PF02582_consen 87 DFFEEQVDKLLEETEPIPEELAKTGKLPLSRKELLKLIGELFSLRHDINLNSDILDTPE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHhhhcccCch
Confidence 77777777777766643 444 55 56999999999999999988777666666665
No 59
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=21.93 E-value=3.9e+02 Score=24.38 Aligned_cols=48 Identities=21% Similarity=0.177 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHHHHhhhhhc
Q 024314 11 PKTPLEVVKATKVSLMALDIKTV-VEVKALEKAMEEIEKNFVTMRCMLS 58 (269)
Q Consensus 11 ~ktP~e~Vr~~~e~l~~l~~~~~-~~~~~~~k~~ee~~K~L~~mK~il~ 58 (269)
|..-..+++.+.+.|.+++.... .-.++.+++.+++...-..++..+-
T Consensus 119 p~~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 167 (282)
T cd01017 119 PVLAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQEYRAKLA 167 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667889999999999886442 1223445566665555555555443
No 60
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.91 E-value=2.1e+02 Score=24.41 Aligned_cols=61 Identities=23% Similarity=0.179 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHH--HHHHHHHHHHhhc
Q 024314 13 TPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNAD--QVLQLATEVCKED 81 (269)
Q Consensus 13 tP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e--~~~qL~~ei~~~d 81 (269)
|-.|..+.++..|..++.. .++.+.++...++..-.. .|.+|.|-..| ...++|+++..+.
T Consensus 2 ~k~efL~~L~~~L~~lp~~------e~~e~l~~Y~e~f~d~~~--~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEE------EREEILEYYEEYFDDAGE--EGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred CHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHHhhh--CCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 3468888888888766432 236777888888775432 34444332222 2346677766543
No 61
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.83 E-value=4e+02 Score=24.12 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHHHHhhhhhc
Q 024314 11 PKTPLEVVKATKVSLMALDIKTV-VEVKALEKAMEEIEKNFVTMRCMLS 58 (269)
Q Consensus 11 ~ktP~e~Vr~~~e~l~~l~~~~~-~~~~~~~k~~ee~~K~L~~mK~il~ 58 (269)
|..-..+++.+.+.|.+++.... .-.++.+++.+++...-..++..+-
T Consensus 118 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 166 (266)
T cd01018 118 PANAKIMAENIYEALAELDPQNATYYQANLDALLAELDALDSEIRTILS 166 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667889999999999886542 1224455666666555555555544
No 62
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=21.63 E-value=2.5e+02 Score=22.04 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh--cHHHHHHhhCCCCChhhhhhHHHHHHHHh
Q 024314 41 KAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE--DVLILLVHKLPILGWEARKDLVHCWSILL 109 (269)
Q Consensus 41 k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~--dll~~Li~~l~~L~fE~RKdv~~If~~ll 109 (269)
+.++++.-.+..-...|.|+++.+- .|.|.+-+ +|.. ...+-|+.|-...--|++-.+..||..+-
T Consensus 3 ~l~eq~dgLveKytELL~Ge~~~e~-~EkVk~W~--lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~Ik 70 (82)
T PF10835_consen 3 KLQEQFDGLVEKYTELLLGETSPEM-KEKVKQWA--LYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEIK 70 (82)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHH--HHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHHH
Confidence 4556666666666778888865432 23333322 3332 45778888888888899999988887663
No 63
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=21.46 E-value=3.5e+02 Score=24.08 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=47.0
Q ss_pred CCChHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHHHHHhhhhhcC------------------------------
Q 024314 11 PKTPLEVVKATKVSLMALDIKTVV-EVKALEKAMEEIEKNFVTMRCMLSG------------------------------ 59 (269)
Q Consensus 11 ~ktP~e~Vr~~~e~l~~l~~~~~~-~~~~~~k~~ee~~K~L~~mK~il~G------------------------------ 59 (269)
|..-..+++.+.+.|.+++..... -.++.+++.+++.+.-.+++..+.+
T Consensus 98 p~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~h~~~~Y~~~~~gl~~~~~~~~ 177 (256)
T PF01297_consen 98 PENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKLPGRPVVVYHDAFQYFAKRYGLKVIGVIEI 177 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGGEEEEEESTTHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEChHHHHHHHhcCCceeeeecc
Confidence 455567888999999998765431 1334556666666555555554442
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcH
Q 024314 60 DGEVEPNADQVLQLATEVCKEDV 82 (269)
Q Consensus 60 ~~e~ep~~e~~~qL~~ei~~~dl 82 (269)
..+.+|++..+.++.+.+-..+.
T Consensus 178 ~~~~~ps~~~l~~l~~~ik~~~v 200 (256)
T PF01297_consen 178 SPGEEPSPKDLAELIKLIKENKV 200 (256)
T ss_dssp SSSSSS-HHHHHHHHHHHHHTT-
T ss_pred ccccCCCHHHHHHHHHHhhhcCC
Confidence 34778999999999988877663
No 64
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=21.12 E-value=6.9e+02 Score=24.03 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=49.0
Q ss_pred HhhhHHHHHHHhcchhHHHHhhh---cc--CCCchhhhchHHHHHHHHhcchhhHHHHHHhhHH-HHHHHHHhhhcCCCc
Q 024314 153 CIKFPSLARYILESASFELFFKF---VE--LPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYD-EFFDLYEKLLTSSNY 226 (269)
Q Consensus 153 cik~e~la~~iL~~~~f~~fF~y---v~--~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd-~Ff~~yn~Ll~s~NY 226 (269)
|++.|.+-..++.+....++..- ++ .++--|-+.++..++.++..++...++ |-+ ||=.-+..++++..
T Consensus 115 ~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~----~~~~W~~~l~~~l~~~~k- 189 (372)
T PF12231_consen 115 CLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIK----HADIWFPILFPDLLSSAK- 189 (372)
T ss_pred HHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcch-
Confidence 44555555555555544444432 33 677888899999999999998877554 445 44444555665433
Q ss_pred cchhchhhhhHHh
Q 024314 227 VTRRQSLKLLSEF 239 (269)
Q Consensus 227 VTkRQSLKLLgel 239 (269)
-+|-+++.|+-++
T Consensus 190 ~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 190 DIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 3344466665544
No 65
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=20.89 E-value=1.1e+02 Score=29.05 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=31.4
Q ss_pred chhhhchHHHHHHHHhcch-------hhHHHHHHhhHHHHHHHHHhhhcCCCcc
Q 024314 181 FDVASDAFSTFKDLLTKHL-------TVVSEYLTAHYDEFFDLYEKLLTSSNYV 227 (269)
Q Consensus 181 FeiasDAf~TfkelLt~Hk-------~lvaefl~~Nyd~Ff~~yn~Ll~s~NYV 227 (269)
++|+-..+.|..+....|. .-|.|+|..|.|||-.++.. ...+||
T Consensus 49 ~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~idwl~~~l~~--~~~~Y~ 100 (290)
T KOG1533|consen 49 CAVDIRELITVEDVMEELGLGPNGALKYCMEYLEANIDWLLEKLKP--LTDHYV 100 (290)
T ss_pred CcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhhhHHHHHHhhh--ccCcEE
Confidence 3333334445555555554 45779999999999999988 677886
No 66
>COG4836 Predicted membrane protein [Function unknown]
Probab=20.61 E-value=54 Score=25.21 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=33.3
Q ss_pred HhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhcCCCCHHHHHHhhCChhhHH
Q 024314 207 TAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLK 260 (269)
Q Consensus 207 ~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYis~~~NLk 260 (269)
+-|||.|+++ +|||+.+-+=.+-.+.+.-+=.++...|.+...-|+
T Consensus 28 si~~d~fiKk--------~~~tQa~llmI~vtI~lg~~vsnFfldyL~~S~ql~ 73 (77)
T COG4836 28 SINYDKFIKK--------GKVTQARLLMIFVTIALGYAVSNFFLDYLAYSKQLI 73 (77)
T ss_pred HhhHHHHhhc--------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999964 899999988877777666666666666666555444
No 67
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.51 E-value=99 Score=28.00 Aligned_cols=48 Identities=23% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCccCCCCC-CCC-ChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhh
Q 024314 1 MSFSFFKPS-RPK-TPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRC 55 (269)
Q Consensus 1 Msflf~~~~-r~k-tP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~ 55 (269)
|.-|||+++ +|+ |+.|-++.+++.+..|+. +-++..+|++++-..+|.
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~k-------Ki~~ld~E~~~ak~~~k~ 50 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDA-------RINKIDAELMKLKEQIQR 50 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 777898763 233 788888888888766543 224455566666555554
No 68
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=20.44 E-value=52 Score=28.72 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=15.5
Q ss_pred CcchhhhhhHHHHHHhh
Q 024314 139 NKEVALHCGIMLRECIK 155 (269)
Q Consensus 139 ~~dial~~G~mLREcik 155 (269)
+|+|.-++|+|+|-|.-
T Consensus 9 ~PeIP~NTGNI~R~ca~ 25 (155)
T COG0219 9 QPEIPPNTGNIIRTCAA 25 (155)
T ss_pred CCCCCCchhHHHHHHHh
Confidence 79999999999999964
Done!