Query 024315
Match_columns 269
No_of_seqs 277 out of 2955
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0529 CysC Adenylylsulfate k 100.0 5.6E-45 1.2E-49 301.1 16.6 187 81-268 2-189 (197)
2 KOG0635 Adenosine 5'-phosphosu 100.0 2.3E-44 5E-49 290.1 15.2 190 79-268 8-198 (207)
3 PF01583 APS_kinase: Adenylyls 100.0 3.2E-34 6.9E-39 236.4 13.8 153 101-253 1-153 (156)
4 KOG4238 Bifunctional ATP sulfu 100.0 1.8E-30 3.8E-35 234.7 11.1 188 79-267 23-217 (627)
5 PRK05506 bifunctional sulfate 100.0 2.4E-28 5.1E-33 242.7 19.2 244 12-268 380-626 (632)
6 PRK03846 adenylylsulfate kinas 99.9 4.4E-25 9.5E-30 189.4 16.9 187 81-268 3-190 (198)
7 TIGR00455 apsK adenylylsulfate 99.9 2E-24 4.4E-29 182.9 16.7 182 85-268 2-184 (184)
8 cd02027 APSK Adenosine 5'-phos 99.9 2.8E-21 6.1E-26 158.8 14.6 149 104-252 1-149 (149)
9 PRK00889 adenylylsulfate kinas 99.9 2.4E-20 5.2E-25 156.6 17.6 166 100-268 2-168 (175)
10 PRK05537 bifunctional sulfate 99.8 2.7E-19 5.8E-24 175.4 16.1 223 39-268 333-560 (568)
11 COG3839 MalK ABC-type sugar tr 99.7 1.6E-17 3.4E-22 152.4 12.4 142 80-224 7-175 (338)
12 COG1125 OpuBA ABC-type proline 99.7 1E-17 2.3E-22 146.5 9.0 142 80-224 5-177 (309)
13 COG3842 PotA ABC-type spermidi 99.7 1.1E-17 2.4E-22 154.2 9.4 140 80-225 9-179 (352)
14 COG1120 FepC ABC-type cobalami 99.7 8.6E-18 1.9E-22 148.9 7.8 144 80-226 6-182 (258)
15 PRK05541 adenylylsulfate kinas 99.7 3.9E-16 8.4E-21 131.1 17.0 166 99-268 4-170 (176)
16 COG1126 GlnQ ABC-type polar am 99.7 2.7E-17 5.9E-22 140.9 10.0 141 80-223 6-177 (240)
17 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 2E-17 4.4E-22 146.0 9.3 144 80-226 8-183 (254)
18 COG1116 TauB ABC-type nitrate/ 99.7 4.7E-17 1E-21 142.3 11.4 141 80-224 7-172 (248)
19 KOG0058 Peptide exporter, ABC 99.7 1E-16 2.2E-21 156.9 11.4 163 43-222 441-644 (716)
20 COG1118 CysA ABC-type sulfate/ 99.7 1.5E-16 3.3E-21 142.4 10.7 143 81-226 7-181 (345)
21 COG2884 FtsE Predicted ATPase 99.6 9.4E-16 2E-20 129.1 9.5 142 80-224 5-179 (223)
22 COG1136 SalX ABC-type antimicr 99.6 2.7E-15 5.9E-20 130.6 12.8 136 89-227 18-187 (226)
23 COG0410 LivF ABC-type branched 99.6 8.5E-16 1.8E-20 132.9 9.2 144 80-226 7-180 (237)
24 cd03214 ABC_Iron-Siderophores_ 99.6 3.7E-15 8.1E-20 125.8 12.9 133 81-226 4-141 (180)
25 COG3638 ABC-type phosphate/pho 99.6 1.6E-15 3.4E-20 131.6 10.7 144 80-226 7-191 (258)
26 COG3265 GntK Gluconate kinase 99.6 3.5E-15 7.5E-20 120.8 11.0 148 108-268 1-157 (161)
27 COG0411 LivG ABC-type branched 99.6 1.5E-16 3.3E-21 138.5 2.9 144 80-226 8-193 (250)
28 KOG0055 Multidrug/pheromone ex 99.6 2.3E-15 5E-20 154.8 11.5 171 39-224 320-531 (1228)
29 cd03229 ABC_Class3 This class 99.6 6.5E-16 1.4E-20 130.2 5.5 133 81-227 5-145 (178)
30 cd03216 ABC_Carb_Monos_I This 99.6 2.5E-15 5.4E-20 125.1 8.6 122 81-227 5-127 (163)
31 COG1117 PstB ABC-type phosphat 99.6 1.4E-14 3.1E-19 124.1 13.0 169 80-267 11-217 (253)
32 COG1127 Ttg2A ABC-type transpo 99.6 3.1E-15 6.7E-20 130.1 8.6 143 80-225 12-188 (263)
33 COG1135 AbcC ABC-type metal io 99.6 1E-14 2.2E-19 131.0 11.8 136 88-226 18-185 (339)
34 COG1131 CcmA ABC-type multidru 99.6 8E-15 1.7E-19 133.3 11.2 144 80-226 8-180 (293)
35 cd03259 ABC_Carb_Solutes_like 99.6 1.2E-14 2.7E-19 125.5 11.5 144 81-227 5-175 (213)
36 COG4608 AppF ABC-type oligopep 99.6 5.7E-15 1.2E-19 130.8 9.3 118 88-221 25-148 (268)
37 COG4604 CeuD ABC-type enteroch 99.6 4.3E-15 9.3E-20 125.9 8.0 137 80-226 5-179 (252)
38 cd03226 ABC_cobalt_CbiO_domain 99.6 1.1E-14 2.3E-19 125.2 10.6 144 81-227 4-171 (205)
39 cd03230 ABC_DR_subfamily_A Thi 99.6 1.1E-15 2.4E-20 128.3 4.1 132 81-227 5-140 (173)
40 cd03261 ABC_Org_Solvent_Resist 99.6 1E-14 2.2E-19 128.0 10.4 145 80-227 4-181 (235)
41 cd03246 ABCC_Protease_Secretio 99.6 2E-15 4.4E-20 126.6 5.5 121 90-227 16-141 (173)
42 PRK13536 nodulation factor exp 99.6 1.2E-14 2.7E-19 134.6 11.1 145 80-227 45-217 (340)
43 cd03228 ABCC_MRP_Like The MRP 99.6 2.7E-15 5.9E-20 125.6 5.9 121 90-227 16-141 (171)
44 COG1124 DppF ABC-type dipeptid 99.6 2E-14 4.4E-19 125.2 11.1 140 80-222 7-181 (252)
45 TIGR00960 3a0501s02 Type II (G 99.6 1.5E-14 3.4E-19 125.1 10.3 145 80-227 5-183 (216)
46 PRK11432 fbpC ferric transport 99.6 1.2E-14 2.7E-19 135.1 10.3 144 80-226 10-180 (351)
47 PRK13537 nodulation ABC transp 99.6 1.2E-14 2.7E-19 132.7 10.2 144 80-226 11-182 (306)
48 cd03293 ABC_NrtD_SsuB_transpor 99.6 1.8E-14 3.9E-19 125.1 10.6 143 81-227 5-176 (220)
49 COG3845 ABC-type uncharacteriz 99.6 1.5E-14 3.2E-19 136.6 10.6 144 80-226 8-184 (501)
50 cd03224 ABC_TM1139_LivF_branch 99.6 2E-14 4.4E-19 124.7 10.7 144 81-227 5-177 (222)
51 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 1.7E-14 3.6E-19 125.0 10.1 144 81-227 5-185 (218)
52 cd03269 ABC_putative_ATPase Th 99.6 1.3E-14 2.8E-19 125.1 9.3 143 81-226 5-172 (210)
53 cd03225 ABC_cobalt_CbiO_domain 99.6 2.4E-14 5.2E-19 123.4 11.0 143 81-226 4-178 (211)
54 TIGR03608 L_ocin_972_ABC putat 99.6 3.2E-14 7E-19 122.1 11.8 144 81-227 3-179 (206)
55 COG2274 SunT ABC-type bacterio 99.6 5.7E-15 1.2E-19 147.8 7.9 143 81-226 476-653 (709)
56 TIGR02673 FtsE cell division A 99.6 2.8E-14 6.1E-19 123.3 11.2 144 81-227 6-182 (214)
57 TIGR03265 PhnT2 putative 2-ami 99.6 1.5E-14 3.3E-19 134.6 10.2 144 80-226 8-178 (353)
58 cd03233 ABC_PDR_domain1 The pl 99.6 8.6E-15 1.9E-19 125.9 7.8 137 89-227 20-163 (202)
59 PRK11650 ugpC glycerol-3-phosp 99.6 1.6E-14 3.6E-19 134.6 10.1 144 80-226 7-178 (356)
60 TIGR02868 CydC thiol reductant 99.6 1.1E-14 2.4E-19 142.0 9.2 143 82-227 335-515 (529)
61 COG3840 ThiQ ABC-type thiamine 99.5 5.9E-14 1.3E-18 117.7 12.0 137 80-224 5-171 (231)
62 cd03263 ABC_subfamily_A The AB 99.5 2E-14 4.3E-19 124.7 9.6 143 81-226 5-177 (220)
63 cd03265 ABC_DrrA DrrA is the A 99.5 2.7E-14 5.8E-19 124.1 10.4 144 80-226 4-175 (220)
64 cd03256 ABC_PhnC_transporter A 99.5 2.5E-14 5.5E-19 125.6 10.3 144 81-227 5-189 (241)
65 cd03301 ABC_MalK_N The N-termi 99.5 4E-14 8.7E-19 122.2 11.4 145 80-227 4-175 (213)
66 PRK09536 btuD corrinoid ABC tr 99.5 1.8E-14 4E-19 136.1 9.9 144 80-226 7-183 (402)
67 PRK09452 potA putrescine/sperm 99.5 2.5E-14 5.4E-19 134.2 10.7 144 80-226 18-188 (375)
68 cd03247 ABCC_cytochrome_bd The 99.5 2.8E-15 6E-20 126.3 3.8 123 90-227 16-143 (178)
69 cd03232 ABC_PDR_domain2 The pl 99.5 1.4E-14 3E-19 123.6 8.2 131 89-227 20-153 (192)
70 cd03260 ABC_PstB_phosphate_tra 99.5 2.9E-14 6.4E-19 124.3 10.4 145 81-227 5-186 (227)
71 cd03235 ABC_Metallic_Cations A 99.5 2E-14 4.4E-19 124.1 9.2 143 81-227 4-177 (213)
72 cd03262 ABC_HisP_GlnQ_permease 99.5 4.8E-14 1E-18 121.6 11.4 144 80-226 4-179 (213)
73 KOG0055 Multidrug/pheromone ex 99.5 1.7E-14 3.6E-19 148.5 9.9 167 43-224 961-1168(1228)
74 TIGR02314 ABC_MetN D-methionin 99.5 2.8E-14 6E-19 132.4 10.4 135 89-226 18-184 (343)
75 TIGR01288 nodI ATP-binding ABC 99.5 3.2E-14 7E-19 129.7 10.6 144 80-226 8-179 (303)
76 cd03268 ABC_BcrA_bacitracin_re 99.5 3.6E-14 7.8E-19 122.1 10.4 144 81-227 5-171 (208)
77 cd03219 ABC_Mj1267_LivG_branch 99.5 5.2E-14 1.1E-18 123.3 11.6 145 80-227 4-188 (236)
78 cd03222 ABC_RNaseL_inhibitor T 99.5 2.7E-14 5.8E-19 120.7 9.4 110 81-226 5-115 (177)
79 PRK10851 sulfate/thiosulfate t 99.5 2.9E-14 6.4E-19 132.7 10.5 144 80-226 6-180 (353)
80 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 2E-14 4.4E-19 117.4 8.3 110 81-227 5-115 (144)
81 TIGR02315 ABC_phnC phosphonate 99.5 4.2E-14 9.1E-19 124.5 10.8 143 81-226 6-189 (243)
82 cd03266 ABC_NatA_sodium_export 99.5 2.4E-14 5.2E-19 124.0 9.1 144 81-227 6-181 (218)
83 PRK14259 phosphate ABC transpo 99.5 4E-14 8.6E-19 127.0 10.8 146 80-227 17-199 (269)
84 COG1137 YhbG ABC-type (unclass 99.5 3.4E-15 7.3E-20 126.7 3.5 141 80-223 8-180 (243)
85 PRK11153 metN DL-methionine tr 99.5 3.8E-14 8.1E-19 131.5 10.8 144 80-226 5-184 (343)
86 cd03218 ABC_YhbG The ABC trans 99.5 4.3E-14 9.4E-19 123.5 10.7 144 80-226 4-177 (232)
87 COG4559 ABC-type hemin transpo 99.5 1.3E-14 2.9E-19 124.1 7.1 62 80-142 5-66 (259)
88 cd03292 ABC_FtsE_transporter F 99.5 5E-14 1.1E-18 121.6 10.8 144 81-227 5-181 (214)
89 COG4175 ProV ABC-type proline/ 99.5 5.6E-14 1.2E-18 126.5 11.3 124 87-222 39-204 (386)
90 cd03213 ABCG_EPDR ABCG transpo 99.5 1.9E-14 4.2E-19 123.0 8.0 131 89-227 22-156 (194)
91 PRK11000 maltose/maltodextrin 99.5 3.5E-14 7.6E-19 133.0 10.5 144 80-226 7-177 (369)
92 cd03296 ABC_CysA_sulfate_impor 99.5 6E-14 1.3E-18 123.4 11.2 144 80-226 6-180 (239)
93 TIGR03258 PhnT 2-aminoethylpho 99.5 3.8E-14 8.2E-19 132.4 10.3 144 80-226 9-181 (362)
94 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 2.6E-14 5.5E-19 143.6 9.8 134 91-227 468-633 (686)
95 cd03217 ABC_FeS_Assembly ABC-t 99.5 1.6E-14 3.6E-19 123.9 7.1 137 81-226 5-148 (200)
96 TIGR01188 drrA daunorubicin re 99.5 5.3E-14 1.2E-18 128.2 10.9 136 88-226 5-168 (302)
97 PRK09493 glnQ glutamine ABC tr 99.5 6.3E-14 1.4E-18 123.3 10.9 144 80-226 5-180 (240)
98 TIGR01166 cbiO cobalt transpor 99.5 3E-14 6.5E-19 121.0 8.6 135 90-227 6-172 (190)
99 cd03258 ABC_MetN_methionine_tr 99.5 4.1E-14 8.9E-19 123.8 9.7 143 81-226 6-184 (233)
100 PRK11607 potG putrescine trans 99.5 4.3E-14 9.4E-19 132.7 10.4 141 80-223 23-190 (377)
101 cd03295 ABC_OpuCA_Osmoprotecti 99.5 5.2E-14 1.1E-18 124.0 10.4 144 81-227 5-180 (242)
102 cd03215 ABC_Carb_Monos_II This 99.5 2.8E-14 6E-19 120.7 8.3 125 91-227 15-149 (182)
103 PRK13637 cbiO cobalt transport 99.5 4.4E-14 9.6E-19 127.9 9.9 134 90-226 21-188 (287)
104 cd03264 ABC_drug_resistance_li 99.5 7E-14 1.5E-18 120.6 10.7 143 81-227 5-175 (211)
105 PRK10908 cell division protein 99.5 5.7E-14 1.2E-18 122.2 10.2 143 81-226 6-181 (222)
106 COG4619 ABC-type uncharacteriz 99.5 1.5E-13 3.2E-18 114.0 11.9 124 88-221 15-172 (223)
107 cd03231 ABC_CcmA_heme_exporter 99.5 8.7E-14 1.9E-18 119.4 11.1 144 80-226 4-169 (201)
108 PRK14247 phosphate ABC transpo 99.5 8.5E-14 1.8E-18 123.2 11.3 146 80-227 7-191 (250)
109 PRK11248 tauB taurine transpor 99.5 6.8E-14 1.5E-18 124.6 10.7 143 80-226 5-172 (255)
110 PRK14242 phosphate transporter 99.5 1E-13 2.2E-18 122.9 11.8 146 80-227 10-194 (253)
111 PRK13638 cbiO cobalt transport 99.5 6.3E-14 1.4E-18 125.7 10.6 145 80-227 5-181 (271)
112 cd00227 CPT Chloramphenicol (C 99.5 2.5E-13 5.4E-18 114.2 13.5 157 101-268 1-174 (175)
113 PRK11629 lolD lipoprotein tran 99.5 8.7E-14 1.9E-18 122.0 11.2 145 80-227 9-190 (233)
114 TIGR03864 PQQ_ABC_ATP ABC tran 99.5 6.1E-14 1.3E-18 123.2 10.2 144 80-226 5-176 (236)
115 PRK11247 ssuB aliphatic sulfon 99.5 7.2E-14 1.6E-18 124.7 10.6 143 80-226 16-177 (257)
116 PRK14235 phosphate transporter 99.5 7.8E-14 1.7E-18 124.9 10.9 146 80-227 23-208 (267)
117 TIGR02211 LolD_lipo_ex lipopro 99.5 9.3E-14 2E-18 120.6 11.0 135 89-226 18-185 (221)
118 COG1129 MglA ABC-type sugar tr 99.5 5.7E-14 1.2E-18 134.4 10.5 151 79-232 11-195 (500)
119 PRK13538 cytochrome c biogenes 99.5 2.9E-13 6.2E-18 116.4 14.0 143 81-226 6-173 (204)
120 PRK11264 putative amino-acid A 99.5 7.5E-14 1.6E-18 123.4 10.5 144 80-226 7-188 (250)
121 TIGR03410 urea_trans_UrtE urea 99.5 1E-13 2.2E-18 121.2 11.0 145 80-227 4-176 (230)
122 cd03257 ABC_NikE_OppD_transpor 99.5 7.5E-14 1.6E-18 121.5 10.2 134 90-226 19-189 (228)
123 PRK10247 putative ABC transpor 99.5 1.1E-13 2.3E-18 120.9 11.1 144 80-226 11-181 (225)
124 TIGR03522 GldA_ABC_ATP gliding 99.5 6.5E-14 1.4E-18 127.6 10.2 144 80-226 6-177 (301)
125 PRK11124 artP arginine transpo 99.5 7.3E-14 1.6E-18 123.0 10.1 144 80-226 6-185 (242)
126 TIGR00972 3a0107s01c2 phosphat 99.5 8.4E-14 1.8E-18 123.1 10.6 145 80-227 5-189 (247)
127 PRK14250 phosphate ABC transpo 99.5 1.1E-13 2.3E-18 122.1 11.1 145 80-227 7-176 (241)
128 COG4152 ABC-type uncharacteriz 99.5 5.1E-14 1.1E-18 122.8 8.7 144 80-226 6-174 (300)
129 PRK13539 cytochrome c biogenes 99.5 1.5E-13 3.3E-18 118.5 11.7 144 80-226 6-171 (207)
130 PRK13540 cytochrome c biogenes 99.5 1.1E-13 2.4E-18 118.7 10.8 145 80-227 5-172 (200)
131 TIGR01978 sufC FeS assembly AT 99.5 1.3E-13 2.9E-18 121.2 11.6 146 80-227 4-189 (243)
132 PRK14254 phosphate ABC transpo 99.5 1.6E-13 3.6E-18 124.1 12.4 146 80-227 43-225 (285)
133 PRK10744 pstB phosphate transp 99.5 1.1E-13 2.3E-18 123.4 11.0 146 80-227 17-201 (260)
134 PRK13646 cbiO cobalt transport 99.5 8.5E-14 1.8E-18 126.0 10.4 144 80-226 6-189 (286)
135 PRK11174 cysteine/glutathione 99.5 5.7E-14 1.2E-18 138.7 9.8 133 91-227 365-530 (588)
136 PRK14269 phosphate ABC transpo 99.5 1.5E-13 3.3E-18 121.5 11.5 146 80-227 6-187 (246)
137 COG1132 MdlB ABC-type multidru 99.5 9.7E-14 2.1E-18 136.6 11.4 143 81-226 328-509 (567)
138 KOG0057 Mitochondrial Fe/S clu 99.5 7.5E-14 1.6E-18 133.1 10.1 144 80-227 350-532 (591)
139 PRK11614 livF leucine/isoleuci 99.5 8.2E-14 1.8E-18 122.3 9.6 144 80-226 9-181 (237)
140 PRK10253 iron-enterobactin tra 99.5 1.3E-13 2.9E-18 123.3 11.1 144 80-226 11-187 (265)
141 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 3.7E-14 8E-19 143.0 8.5 144 81-227 482-660 (710)
142 TIGR03740 galliderm_ABC gallid 99.5 1.7E-13 3.6E-18 119.3 11.3 143 81-226 5-168 (223)
143 COG4525 TauB ABC-type taurine 99.5 2.9E-13 6.3E-18 114.8 12.2 135 81-222 8-172 (259)
144 TIGR03411 urea_trans_UrtD urea 99.5 1.6E-13 3.5E-18 120.7 11.3 145 80-227 6-188 (242)
145 TIGR01186 proV glycine betaine 99.5 6E-14 1.3E-18 131.0 9.0 136 88-226 5-173 (363)
146 KOG3354 Gluconate kinase [Carb 99.5 3.4E-13 7.4E-18 110.0 12.1 153 103-267 13-185 (191)
147 TIGR03005 ectoine_ehuA ectoine 99.5 1.2E-13 2.6E-18 122.5 10.4 145 80-227 4-191 (252)
148 cd03294 ABC_Pro_Gly_Bertaine T 99.5 1E-13 2.2E-18 124.4 10.1 143 81-226 29-204 (269)
149 PRK13647 cbiO cobalt transport 99.5 1.3E-13 2.7E-18 124.1 10.7 144 80-226 8-182 (274)
150 TIGR02982 heterocyst_DevA ABC 99.5 1.5E-13 3.2E-18 119.5 10.7 143 81-226 6-185 (220)
151 PRK11022 dppD dipeptide transp 99.5 1.9E-13 4E-18 126.1 11.9 136 89-226 20-197 (326)
152 PRK11701 phnK phosphonate C-P 99.5 9.3E-14 2E-18 123.6 9.5 144 80-226 10-195 (258)
153 PRK10790 putative multidrug tr 99.5 5.3E-14 1.1E-18 139.0 8.7 134 91-227 356-521 (592)
154 PRK13541 cytochrome c biogenes 99.5 2.2E-13 4.7E-18 116.4 11.4 142 81-226 6-167 (195)
155 PRK09825 idnK D-gluconate kina 99.5 4.6E-13 9.9E-18 113.1 13.2 149 101-267 2-165 (176)
156 PRK14273 phosphate ABC transpo 99.5 1.4E-13 2.9E-18 122.2 10.3 146 80-227 11-195 (254)
157 PRK11831 putative ABC transpor 99.5 1.3E-13 2.9E-18 123.5 10.3 144 80-226 11-187 (269)
158 PRK13650 cbiO cobalt transport 99.5 1.7E-13 3.6E-18 123.6 11.0 144 80-226 8-184 (279)
159 TIGR01189 ccmA heme ABC export 99.5 5.4E-13 1.2E-17 114.1 13.6 144 81-227 5-172 (198)
160 PRK10584 putative ABC transpor 99.5 1.8E-13 4E-18 119.4 10.8 144 80-226 10-190 (228)
161 PRK11300 livG leucine/isoleuci 99.5 2.4E-13 5.2E-18 120.6 11.7 144 80-226 9-197 (255)
162 PRK13635 cbiO cobalt transport 99.5 1.2E-13 2.7E-18 124.5 10.0 144 80-226 9-184 (279)
163 PRK13632 cbiO cobalt transport 99.5 1.3E-13 2.8E-18 123.8 10.0 145 80-227 11-187 (271)
164 PRK10619 histidine/lysine/argi 99.5 1.5E-13 3.3E-18 122.2 10.4 144 80-226 9-196 (257)
165 PRK13636 cbiO cobalt transport 99.5 9.7E-14 2.1E-18 125.4 9.2 144 80-226 9-185 (283)
166 PRK11160 cysteine/glutathione 99.5 6.4E-14 1.4E-18 138.2 8.7 134 91-227 355-520 (574)
167 cd03223 ABCD_peroxisomal_ALDP 99.5 2E-13 4.3E-18 114.0 10.4 121 90-227 15-136 (166)
168 PRK14267 phosphate ABC transpo 99.5 2E-13 4.2E-18 121.1 10.9 146 80-227 8-194 (253)
169 PRK10575 iron-hydroxamate tran 99.5 2.3E-13 5E-18 121.7 11.4 144 80-226 15-191 (265)
170 PRK14237 phosphate transporter 99.5 2E-13 4.4E-18 122.2 11.1 146 80-227 24-208 (267)
171 PRK13633 cobalt transporter AT 99.5 1.4E-13 3E-18 124.2 10.0 144 80-226 8-188 (280)
172 PRK14248 phosphate ABC transpo 99.5 2.9E-13 6.4E-18 121.1 12.0 146 80-227 25-209 (268)
173 COG4555 NatA ABC-type Na+ tran 99.5 1.1E-13 2.5E-18 117.6 8.8 147 83-232 8-183 (245)
174 PRK11308 dppF dipeptide transp 99.5 1.7E-13 3.7E-18 126.4 10.8 135 89-226 28-198 (327)
175 PRK14268 phosphate ABC transpo 99.5 2.3E-13 5.1E-18 121.1 11.3 146 80-227 16-199 (258)
176 PRK14241 phosphate transporter 99.5 2.1E-13 4.6E-18 121.3 11.0 146 80-227 8-193 (258)
177 TIGR02857 CydD thiol reductant 99.5 9.3E-14 2E-18 135.5 9.3 134 91-227 337-503 (529)
178 PRK10895 lipopolysaccharide AB 99.5 2.5E-13 5.4E-18 119.6 11.2 144 80-226 7-181 (241)
179 TIGR01193 bacteriocin_ABC ABC- 99.5 6.8E-14 1.5E-18 141.0 8.6 134 91-227 489-656 (708)
180 PRK13648 cbiO cobalt transport 99.5 1.8E-13 3.8E-18 122.7 10.3 145 80-227 11-187 (269)
181 PRK14251 phosphate ABC transpo 99.5 2E-13 4.3E-18 120.9 10.5 146 80-227 8-192 (251)
182 TIGR02769 nickel_nikE nickel i 99.5 2.7E-13 5.8E-18 121.3 11.3 135 89-226 24-194 (265)
183 PRK11231 fecE iron-dicitrate t 99.5 2.3E-13 4.9E-18 121.0 10.8 144 80-226 6-182 (255)
184 cd03298 ABC_ThiQ_thiamine_tran 99.5 2.7E-13 5.9E-18 116.9 11.0 141 81-226 5-172 (211)
185 PRK11144 modC molybdate transp 99.5 2.2E-13 4.8E-18 126.8 11.0 141 81-226 5-172 (352)
186 TIGR03873 F420-0_ABC_ATP propo 99.5 2.8E-13 6.1E-18 120.4 11.2 145 80-227 5-182 (256)
187 PRK13543 cytochrome c biogenes 99.5 3.9E-13 8.5E-18 116.5 11.8 144 80-226 15-181 (214)
188 TIGR02142 modC_ABC molybdenum 99.5 2E-13 4.3E-18 127.2 10.6 141 81-226 4-175 (354)
189 TIGR01277 thiQ thiamine ABC tr 99.5 2.8E-13 6E-18 117.2 10.7 142 81-227 5-173 (213)
190 PRK13641 cbiO cobalt transport 99.5 2.2E-13 4.7E-18 123.4 10.4 135 90-227 21-190 (287)
191 cd03254 ABCC_Glucan_exporter_l 99.5 1.1E-13 2.4E-18 120.8 8.2 144 81-227 7-184 (229)
192 PRK14236 phosphate transporter 99.5 4.9E-13 1.1E-17 120.1 12.5 146 80-227 29-213 (272)
193 TIGR00958 3a01208 Conjugate Tr 99.5 1.1E-13 2.3E-18 139.8 9.1 129 92-223 497-658 (711)
194 PRK14274 phosphate ABC transpo 99.5 2.8E-13 6.1E-18 120.6 10.7 146 80-227 16-200 (259)
195 PRK13634 cbiO cobalt transport 99.5 1.9E-13 4.1E-18 124.0 9.8 144 80-226 6-189 (290)
196 cd03244 ABCC_MRP_domain2 Domai 99.5 1.3E-13 2.8E-18 119.7 8.3 144 81-227 7-184 (221)
197 PRK14240 phosphate transporter 99.5 4.3E-13 9.4E-18 118.7 11.8 146 80-227 7-191 (250)
198 PRK13649 cbiO cobalt transport 99.5 1.9E-13 4.2E-18 123.1 9.6 134 90-226 21-189 (280)
199 PRK11176 lipid transporter ATP 99.5 1.6E-13 3.5E-18 135.2 9.9 134 91-227 358-525 (582)
200 PRK13644 cbiO cobalt transport 99.5 1.9E-13 4.2E-18 122.9 9.6 143 81-226 6-180 (274)
201 TIGR00968 3a0106s01 sulfate AB 99.5 3.7E-13 8E-18 118.4 11.1 144 81-227 5-175 (237)
202 cd03300 ABC_PotA_N PotA is an 99.5 4.8E-13 1E-17 117.2 11.7 145 80-227 4-175 (232)
203 PRK14275 phosphate ABC transpo 99.5 2.9E-13 6.3E-18 122.5 10.6 146 80-227 43-227 (286)
204 PRK15112 antimicrobial peptide 99.5 2.8E-13 6E-18 121.3 10.3 135 90-227 27-194 (267)
205 PRK13639 cbiO cobalt transport 99.5 2.1E-13 4.6E-18 122.6 9.6 144 80-226 5-181 (275)
206 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 5.3E-13 1.2E-17 116.6 11.8 142 81-226 27-186 (224)
207 TIGR03375 type_I_sec_LssB type 99.5 1.5E-13 3.4E-18 138.2 9.5 133 92-227 481-646 (694)
208 PRK15056 manganese/iron transp 99.5 2.4E-13 5.2E-18 122.1 9.7 144 80-226 10-186 (272)
209 PRK13652 cbiO cobalt transport 99.5 2.1E-13 4.5E-18 122.9 9.3 144 80-226 7-181 (277)
210 PRK15079 oligopeptide ABC tran 99.5 3.4E-13 7.4E-18 124.6 10.9 135 89-226 34-205 (331)
211 PRK14260 phosphate ABC transpo 99.5 4.1E-13 8.9E-18 119.6 11.0 146 80-227 11-195 (259)
212 TIGR02323 CP_lyasePhnK phospho 99.5 2.1E-13 4.7E-18 120.8 9.2 144 80-226 7-192 (253)
213 PRK13631 cbiO cobalt transport 99.5 2.3E-13 5E-18 125.2 9.6 144 80-226 25-220 (320)
214 cd03245 ABCC_bacteriocin_expor 99.5 2.3E-13 4.9E-18 118.1 9.1 144 81-227 7-185 (220)
215 PRK14256 phosphate ABC transpo 99.5 5.7E-13 1.2E-17 118.1 11.8 145 80-226 8-192 (252)
216 PRK15093 antimicrobial peptide 99.5 4.8E-13 1E-17 123.5 11.7 137 88-226 19-202 (330)
217 PRK10418 nikD nickel transport 99.5 3.2E-13 6.9E-18 120.0 10.1 145 80-227 8-185 (254)
218 PRK11545 gntK gluconate kinase 99.5 1.4E-12 3E-17 108.8 13.2 145 108-268 1-158 (163)
219 PRK09984 phosphonate/organopho 99.5 4E-13 8.7E-18 119.8 10.7 146 80-227 8-197 (262)
220 PRK14244 phosphate ABC transpo 99.5 4.8E-13 1E-17 118.5 11.0 146 80-227 9-194 (251)
221 COG4598 HisP ABC-type histidin 99.5 4.3E-13 9.4E-18 112.4 10.0 149 80-231 10-205 (256)
222 PRK14249 phosphate ABC transpo 99.5 4.4E-13 9.6E-18 118.8 10.7 146 80-227 8-192 (251)
223 cd03297 ABC_ModC_molybdenum_tr 99.5 4.3E-13 9.3E-18 116.0 10.3 140 81-226 5-175 (214)
224 PRK14243 phosphate transporter 99.5 7E-13 1.5E-17 118.6 12.0 146 80-227 14-196 (264)
225 PRK14270 phosphate ABC transpo 99.5 4.8E-13 1E-17 118.5 10.9 146 80-227 8-192 (251)
226 PRK14265 phosphate ABC transpo 99.5 5.9E-13 1.3E-17 119.8 11.5 146 80-227 24-206 (274)
227 PRK10419 nikE nickel transport 99.5 5.6E-13 1.2E-17 119.5 11.3 135 89-226 25-195 (268)
228 PRK14245 phosphate ABC transpo 99.5 5.1E-13 1.1E-17 118.3 10.9 146 80-227 7-191 (250)
229 cd00267 ABC_ATPase ABC (ATP-bi 99.5 2.1E-13 4.6E-18 112.4 8.0 119 82-226 5-124 (157)
230 PRK14263 phosphate ABC transpo 99.4 5.3E-13 1.2E-17 119.2 11.1 145 81-227 13-194 (261)
231 PRK13549 xylose transporter AT 99.4 3.5E-13 7.6E-18 131.0 10.7 145 80-226 9-187 (506)
232 PRK15439 autoinducer 2 ABC tra 99.4 3.3E-13 7.1E-18 131.4 10.5 144 80-226 15-184 (510)
233 PRK10070 glycine betaine trans 99.4 3.1E-13 6.7E-18 127.7 9.9 137 87-226 39-208 (400)
234 PRK09580 sufC cysteine desulfu 99.4 5E-13 1.1E-17 118.0 10.7 145 80-226 5-189 (248)
235 PRK14271 phosphate ABC transpo 99.4 5.2E-13 1.1E-17 120.3 11.0 146 80-227 25-208 (276)
236 PRK14262 phosphate ABC transpo 99.4 4.4E-13 9.5E-18 118.6 10.2 146 80-227 7-191 (250)
237 PRK13548 hmuV hemin importer A 99.4 7.1E-13 1.5E-17 118.2 11.6 144 80-226 6-184 (258)
238 PRK10762 D-ribose transporter 99.4 4.3E-13 9.2E-18 130.2 11.0 144 80-226 8-185 (501)
239 PRK10522 multidrug transporter 99.4 4.2E-13 9.1E-18 131.6 11.1 143 81-226 327-493 (547)
240 PRK13657 cyclic beta-1,2-gluca 99.4 3E-13 6.6E-18 133.6 10.1 133 91-227 350-516 (588)
241 PRK14238 phosphate transporter 99.4 4.9E-13 1.1E-17 120.1 10.5 146 80-227 28-212 (271)
242 cd03252 ABCC_Hemolysin The ABC 99.4 3E-13 6.4E-18 118.7 9.0 136 89-227 15-183 (237)
243 COG4987 CydC ABC-type transpor 99.4 3.2E-13 6.9E-18 128.7 9.7 130 91-224 353-516 (573)
244 PRK13643 cbiO cobalt transport 99.4 2.8E-13 6.1E-18 122.7 9.0 133 91-226 21-188 (288)
245 TIGR02203 MsbA_lipidA lipid A 99.4 2.6E-13 5.6E-18 133.4 9.5 133 92-227 348-514 (571)
246 PRK14255 phosphate ABC transpo 99.4 9E-13 1.9E-17 116.8 12.0 146 80-227 9-193 (252)
247 PRK14272 phosphate ABC transpo 99.4 7E-13 1.5E-17 117.4 11.3 146 80-227 8-193 (252)
248 PRK10771 thiQ thiamine transpo 99.4 5.9E-13 1.3E-17 116.6 10.7 142 80-226 5-173 (232)
249 cd03369 ABCC_NFT1 Domain 2 of 99.4 2.4E-13 5.3E-18 117.0 8.1 141 81-227 11-170 (207)
250 PRK09544 znuC high-affinity zi 99.4 8.1E-13 1.7E-17 117.5 11.6 144 80-226 8-164 (251)
251 PRK13645 cbiO cobalt transport 99.4 3E-13 6.6E-18 122.4 9.0 144 80-226 10-194 (289)
252 PRK09473 oppD oligopeptide tra 99.4 4.3E-13 9.4E-18 123.9 10.2 137 88-226 28-205 (330)
253 PRK14264 phosphate ABC transpo 99.4 6.2E-13 1.3E-17 121.5 11.0 146 80-227 49-245 (305)
254 PRK14239 phosphate transporter 99.4 1E-12 2.3E-17 116.3 12.1 146 80-227 9-193 (252)
255 TIGR01194 cyc_pep_trnsptr cycl 99.4 5.5E-13 1.2E-17 131.1 11.2 131 91-224 357-512 (555)
256 PRK14253 phosphate ABC transpo 99.4 7.3E-13 1.6E-17 117.1 10.9 146 80-227 7-190 (249)
257 cd03248 ABCC_TAP TAP, the Tran 99.4 3.7E-13 8E-18 117.3 8.8 145 80-227 15-195 (226)
258 PRK13651 cobalt transporter AT 99.4 4.6E-13 9.9E-18 122.4 9.5 144 80-226 6-209 (305)
259 COG1119 ModF ABC-type molybden 99.4 8.2E-13 1.8E-17 115.4 10.5 142 80-224 35-213 (257)
260 PRK10938 putative molybdenum t 99.4 3.8E-13 8.3E-18 130.2 9.4 144 80-226 7-179 (490)
261 PTZ00265 multidrug resistance 99.4 3.7E-13 7.9E-18 144.6 10.2 144 82-227 1166-1403(1466)
262 cd03289 ABCC_CFTR2 The CFTR su 99.4 4.1E-13 8.9E-18 121.0 8.9 143 81-227 7-183 (275)
263 cd03253 ABCC_ATM1_transporter 99.4 3E-13 6.4E-18 118.5 7.7 144 81-227 5-182 (236)
264 cd03251 ABCC_MsbA MsbA is an e 99.4 7.1E-13 1.5E-17 116.0 10.1 135 90-227 16-183 (234)
265 PRK10982 galactose/methyl gala 99.4 6.1E-13 1.3E-17 128.8 10.6 143 81-226 3-178 (491)
266 PRK13640 cbiO cobalt transport 99.4 7.3E-13 1.6E-17 119.6 10.3 145 80-226 9-187 (282)
267 PRK09700 D-allose transporter 99.4 6.4E-13 1.4E-17 129.2 10.7 144 80-226 9-189 (510)
268 PRK14252 phosphate ABC transpo 99.4 1.1E-12 2.4E-17 117.2 11.4 146 80-227 20-206 (265)
269 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.4 4E-13 8.7E-18 118.0 8.4 137 89-228 16-185 (238)
270 COG1122 CbiO ABC-type cobalt t 99.4 2.7E-13 5.9E-18 119.4 7.3 141 80-226 7-182 (235)
271 PRK13642 cbiO cobalt transport 99.4 7.4E-13 1.6E-17 119.2 10.2 144 80-226 8-184 (277)
272 PRK14261 phosphate ABC transpo 99.4 8.8E-13 1.9E-17 117.0 10.4 146 80-227 10-194 (253)
273 PRK14258 phosphate ABC transpo 99.4 9.8E-13 2.1E-17 117.4 10.7 146 80-227 11-195 (261)
274 PRK14257 phosphate ABC transpo 99.4 1E-12 2.2E-17 121.4 10.9 135 90-226 96-269 (329)
275 cd03234 ABCG_White The White s 99.4 1E-12 2.3E-17 114.6 10.4 146 80-227 7-188 (226)
276 COG4181 Predicted ABC-type tra 99.4 2.8E-13 6E-18 112.7 6.4 131 87-220 21-184 (228)
277 PRK14266 phosphate ABC transpo 99.4 1.1E-12 2.4E-17 116.0 10.7 146 80-227 7-191 (250)
278 TIGR02204 MsbA_rel ABC transpo 99.4 8.3E-13 1.8E-17 130.0 10.5 134 91-227 355-521 (576)
279 COG4988 CydD ABC-type transpor 99.4 3.1E-13 6.8E-18 130.0 7.1 130 90-222 335-496 (559)
280 KOG0056 Heavy metal exporter H 99.4 6.7E-13 1.5E-17 125.3 9.1 139 81-222 537-714 (790)
281 TIGR01842 type_I_sec_PrtD type 99.4 8.2E-13 1.8E-17 129.4 10.2 135 90-227 332-499 (544)
282 COG4172 ABC-type uncharacteriz 99.4 1.6E-12 3.6E-17 120.4 11.4 139 84-226 295-470 (534)
283 TIGR03415 ABC_choXWV_ATP choli 99.4 5.6E-13 1.2E-17 125.2 8.4 143 81-226 29-208 (382)
284 PRK13547 hmuV hemin importer A 99.4 1.4E-12 3E-17 117.4 10.5 146 80-227 5-199 (272)
285 COG4618 ArpD ABC-type protease 99.4 5.3E-13 1.2E-17 126.5 8.1 134 91-227 351-517 (580)
286 cd03267 ABC_NatA_like Similar 99.4 1.1E-12 2.4E-17 115.4 9.6 138 87-227 32-198 (236)
287 PRK11288 araG L-arabinose tran 99.4 1.3E-12 2.8E-17 126.9 11.0 144 80-226 8-184 (501)
288 TIGR02633 xylG D-xylose ABC tr 99.4 1.2E-12 2.5E-17 127.1 10.6 145 80-226 5-185 (500)
289 CHL00131 ycf16 sulfate ABC tra 99.4 2.5E-12 5.4E-17 113.9 11.8 146 80-227 11-196 (252)
290 cd03288 ABCC_SUR2 The SUR doma 99.4 1.4E-12 3.1E-17 116.1 10.3 145 80-227 23-201 (257)
291 TIGR02324 CP_lyasePhnL phospho 99.4 1.5E-12 3.3E-17 113.2 10.2 136 89-227 21-194 (224)
292 cd03299 ABC_ModC_like Archeal 99.4 1.2E-12 2.5E-17 115.1 9.5 143 81-227 5-174 (235)
293 PRK15134 microcin C ABC transp 99.4 1.4E-12 3.1E-17 127.4 11.1 146 80-227 9-201 (529)
294 TIGR01846 type_I_sec_HlyB type 99.4 1.1E-12 2.3E-17 132.1 10.6 134 91-227 472-638 (694)
295 COG4167 SapF ABC-type antimicr 99.4 8.4E-13 1.8E-17 111.0 8.1 128 86-222 23-189 (267)
296 TIGR01184 ntrCD nitrate transp 99.4 3.1E-12 6.8E-17 112.1 12.1 131 93-226 2-158 (230)
297 PRK06762 hypothetical protein; 99.4 2.2E-12 4.8E-17 107.1 10.4 158 102-268 2-162 (166)
298 cd03290 ABCC_SUR1_N The SUR do 99.4 1.3E-12 2.9E-17 113.2 9.4 139 82-223 6-181 (218)
299 PRK10789 putative multidrug tr 99.4 9E-13 1.9E-17 129.9 8.9 134 91-227 330-496 (569)
300 TIGR01192 chvA glucan exporter 99.4 1E-12 2.2E-17 130.0 9.2 134 91-227 350-516 (585)
301 PF00005 ABC_tran: ABC transpo 99.4 4.9E-13 1.1E-17 107.2 5.5 116 93-211 2-137 (137)
302 TIGR02633 xylG D-xylose ABC tr 99.4 1.3E-12 2.9E-17 126.7 9.6 135 90-226 274-447 (500)
303 TIGR02770 nickel_nikD nickel i 99.4 1.9E-12 4E-17 113.4 9.5 132 93-226 3-169 (230)
304 TIGR03771 anch_rpt_ABC anchore 99.4 2.4E-12 5.2E-17 112.3 10.1 127 97-227 1-158 (223)
305 PRK10261 glutathione transport 99.4 1.9E-12 4.2E-17 128.9 10.8 135 89-226 337-507 (623)
306 cd03250 ABCC_MRP_domain1 Domai 99.4 1.4E-12 3E-17 112.0 8.4 130 90-223 19-168 (204)
307 cd03238 ABC_UvrA The excision 99.4 2.3E-12 5E-17 108.9 9.3 120 88-227 7-134 (176)
308 PF07931 CPT: Chloramphenicol 99.4 4.9E-12 1.1E-16 106.5 11.1 157 102-268 1-173 (174)
309 PRK13549 xylose transporter AT 99.4 1.8E-12 3.9E-17 126.1 9.7 135 90-226 276-449 (506)
310 PRK14246 phosphate ABC transpo 99.4 3.1E-12 6.7E-17 114.1 10.4 144 80-226 14-197 (257)
311 PRK10762 D-ribose transporter 99.4 2.6E-12 5.6E-17 124.8 10.7 143 82-227 258-440 (501)
312 TIGR01313 therm_gnt_kin carboh 99.4 8E-12 1.7E-16 103.4 12.1 149 105-268 1-161 (163)
313 TIGR03269 met_CoM_red_A2 methy 99.4 3E-12 6.4E-17 124.9 11.0 145 80-226 4-212 (520)
314 cd02021 GntK Gluconate kinase 99.4 5.1E-12 1.1E-16 103.1 10.7 131 104-245 1-140 (150)
315 COG1123 ATPase components of v 99.4 1.7E-12 3.6E-17 125.2 8.9 134 88-224 303-471 (539)
316 PLN03211 ABC transporter G-25; 99.4 1.9E-12 4.2E-17 129.5 9.7 143 82-226 74-250 (659)
317 COG4107 PhnK ABC-type phosphon 99.4 2.7E-12 5.9E-17 107.2 8.9 143 81-226 11-195 (258)
318 PRK10938 putative molybdenum t 99.4 4E-12 8.7E-17 123.0 11.2 146 80-227 264-446 (490)
319 PLN03130 ABC transporter C fam 99.4 1.5E-12 3.3E-17 141.1 8.6 144 81-227 1237-1419(1622)
320 PRK15439 autoinducer 2 ABC tra 99.3 4.5E-12 9.7E-17 123.4 11.0 134 90-226 277-447 (510)
321 PLN03232 ABC transporter C fam 99.3 2.2E-12 4.8E-17 139.2 9.4 144 81-227 1234-1416(1495)
322 PRK09700 D-allose transporter 99.3 3.6E-12 7.9E-17 124.0 9.8 133 91-226 278-453 (510)
323 COG0396 sufC Cysteine desulfur 99.3 8.8E-12 1.9E-16 108.0 10.8 53 90-142 18-71 (251)
324 TIGR00957 MRP_assoc_pro multi 99.3 3.6E-12 7.9E-17 137.8 10.1 144 81-227 1284-1466(1522)
325 PTZ00243 ABC transporter; Prov 99.3 3.2E-12 7E-17 138.2 9.6 144 81-227 1308-1491(1560)
326 PRK10261 glutathione transport 99.3 4.7E-12 1E-16 126.1 10.1 143 80-225 16-211 (623)
327 PRK13546 teichoic acids export 99.3 7.8E-12 1.7E-16 112.1 10.5 133 89-226 37-187 (264)
328 cd03237 ABC_RNaseL_inhibitor_d 99.3 9E-12 2E-16 110.5 10.7 128 96-226 19-159 (246)
329 PRK15064 ABC transporter ATP-b 99.3 1E-11 2.2E-16 121.4 12.1 144 80-227 5-200 (530)
330 PRK10636 putative ABC transpor 99.3 7E-12 1.5E-16 125.2 11.1 145 80-227 5-194 (638)
331 PRK15134 microcin C ABC transp 99.3 6.2E-12 1.4E-16 122.9 10.2 134 89-226 299-469 (529)
332 TIGR03269 met_CoM_red_A2 methy 99.3 5.6E-12 1.2E-16 122.9 9.5 135 89-226 297-471 (520)
333 PRK03695 vitamin B12-transport 99.3 5.6E-12 1.2E-16 111.7 8.6 133 91-227 11-178 (248)
334 PRK11819 putative ABC transpor 99.3 1.6E-11 3.4E-16 120.8 12.6 144 80-227 10-208 (556)
335 PTZ00265 multidrug resistance 99.3 2.2E-12 4.9E-17 138.6 7.2 144 80-226 386-623 (1466)
336 COG0444 DppD ABC-type dipeptid 99.3 3.6E-11 7.9E-16 108.9 13.5 133 88-222 17-193 (316)
337 PRK15177 Vi polysaccharide exp 99.3 1.2E-11 2.7E-16 107.2 10.2 131 91-224 2-146 (213)
338 PRK10982 galactose/methyl gala 99.3 1.3E-11 2.8E-16 119.6 11.4 133 91-226 263-435 (491)
339 COG4133 CcmA ABC-type transpor 99.3 2.7E-11 5.8E-16 102.1 11.7 140 81-223 7-171 (209)
340 cd03236 ABC_RNaseL_inhibitor_d 99.3 1.1E-11 2.5E-16 110.5 10.0 142 81-226 5-183 (255)
341 PRK11288 araG L-arabinose tran 99.3 1.3E-11 2.8E-16 119.9 11.0 132 91-225 268-439 (501)
342 PRK15064 ABC transporter ATP-b 99.3 2.1E-11 4.5E-16 119.2 12.1 144 81-227 324-483 (530)
343 PRK11147 ABC transporter ATPas 99.3 1.4E-11 3.1E-16 123.0 10.8 144 80-227 323-485 (635)
344 PRK13545 tagH teichoic acids e 99.3 2.9E-11 6.4E-16 117.0 12.3 134 90-226 38-187 (549)
345 TIGR00954 3a01203 Peroxysomal 99.3 1.9E-11 4.2E-16 122.5 11.5 144 81-227 456-627 (659)
346 PRK11147 ABC transporter ATPas 99.3 2.6E-11 5.6E-16 121.1 12.3 145 80-227 7-201 (635)
347 COG4136 ABC-type uncharacteriz 99.3 4.7E-11 1E-15 97.6 11.5 159 81-243 7-199 (213)
348 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 3.6E-11 7.9E-16 118.1 12.5 144 80-227 8-206 (552)
349 TIGR03574 selen_PSTK L-seryl-t 99.3 3.9E-11 8.5E-16 106.3 11.1 154 104-267 1-166 (249)
350 TIGR01271 CFTR_protein cystic 99.3 1.4E-11 3E-16 133.0 9.4 133 91-227 1234-1398(1490)
351 COG5265 ATM1 ABC-type transpor 99.3 2.6E-11 5.6E-16 112.9 9.7 132 92-226 279-443 (497)
352 PRK13409 putative ATPase RIL; 99.3 2.3E-11 4.9E-16 120.4 9.9 144 80-227 77-257 (590)
353 COG1123 ATPase components of v 99.3 4.3E-11 9.3E-16 115.6 11.5 136 89-226 22-198 (539)
354 TIGR00956 3a01205 Pleiotropic 99.2 3E-11 6.5E-16 129.6 11.5 135 90-226 777-946 (1394)
355 COG1134 TagH ABC-type polysacc 99.2 5.2E-11 1.1E-15 104.1 10.9 134 86-224 37-189 (249)
356 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 7.1E-11 1.5E-15 116.1 12.2 145 80-227 326-488 (552)
357 PRK10636 putative ABC transpor 99.2 5.1E-11 1.1E-15 119.0 11.4 144 80-227 316-475 (638)
358 COG0488 Uup ATPase components 99.2 6.2E-11 1.3E-15 115.5 11.5 143 80-225 7-196 (530)
359 TIGR01257 rim_protein retinal- 99.2 3.3E-11 7.1E-16 131.7 10.5 144 80-226 1941-2114(2272)
360 cd03291 ABCC_CFTR1 The CFTR su 99.2 5.1E-11 1.1E-15 107.8 10.1 130 90-223 51-200 (282)
361 PRK11819 putative ABC transpor 99.2 8.1E-11 1.8E-15 115.8 12.3 145 80-227 328-490 (556)
362 PRK10535 macrolide transporter 99.2 4.1E-11 8.8E-16 119.9 10.3 144 80-226 8-188 (648)
363 TIGR00955 3a01204 The Eye Pigm 99.2 3.6E-11 7.7E-16 119.7 9.8 138 88-227 37-211 (617)
364 TIGR01257 rim_protein retinal- 99.2 3.1E-11 6.8E-16 131.9 9.8 144 80-226 932-1105(2272)
365 PRK13409 putative ATPase RIL; 99.2 1.1E-10 2.3E-15 115.7 12.5 141 81-226 345-497 (590)
366 COG4586 ABC-type uncharacteriz 99.2 4.7E-11 1E-15 105.9 8.4 133 87-222 35-196 (325)
367 COG4778 PhnL ABC-type phosphon 99.2 4.4E-11 9.5E-16 99.6 6.9 140 89-232 24-202 (235)
368 PLN03073 ABC transporter F fam 99.2 3.1E-10 6.8E-15 114.6 13.2 145 80-227 512-672 (718)
369 PLN03073 ABC transporter F fam 99.2 1.2E-10 2.6E-15 117.6 9.9 146 80-227 181-389 (718)
370 COG4615 PvdE ABC-type sideroph 99.2 3.2E-10 7E-15 105.1 11.8 140 82-224 323-490 (546)
371 COG4161 ArtP ABC-type arginine 99.1 3.6E-10 7.8E-15 93.6 9.1 144 80-226 6-185 (242)
372 KOG0061 Transporter, ABC super 99.1 2.6E-10 5.6E-15 113.4 9.7 136 89-229 43-221 (613)
373 PLN03140 ABC transporter G fam 99.1 1.9E-10 4.1E-15 123.7 8.6 133 91-225 895-1062(1470)
374 COG0645 Predicted kinase [Gene 99.1 8.2E-10 1.8E-14 91.7 10.1 150 102-262 1-166 (170)
375 COG4674 Uncharacterized ABC-ty 99.1 4.2E-11 9E-16 101.7 2.3 62 80-142 9-71 (249)
376 PLN03130 ABC transporter C fam 99.1 4.3E-10 9.2E-15 122.3 10.5 128 92-222 633-780 (1622)
377 COG1101 PhnK ABC-type uncharac 99.1 5.1E-10 1.1E-14 96.4 8.8 131 91-224 21-190 (263)
378 TIGR01187 potA spermidine/putr 99.1 2.6E-10 5.7E-15 105.1 7.6 117 107-226 1-144 (325)
379 PLN03232 ABC transporter C fam 99.1 4.7E-10 1E-14 121.4 9.9 131 91-224 632-782 (1495)
380 TIGR00956 3a01205 Pleiotropic 99.0 4.8E-10 1E-14 120.5 9.2 137 88-226 73-253 (1394)
381 COG4148 ModC ABC-type molybdat 99.0 1.7E-10 3.6E-15 102.8 4.6 121 95-218 17-164 (352)
382 TIGR00957 MRP_assoc_pro multi 99.0 5.5E-10 1.2E-14 121.0 9.1 132 91-225 653-803 (1522)
383 COG4172 ABC-type uncharacteriz 99.0 2.6E-09 5.5E-14 99.5 12.1 137 87-225 21-200 (534)
384 COG0488 Uup ATPase components 99.0 1.4E-09 3E-14 106.1 9.3 141 81-226 326-483 (530)
385 PLN03140 ABC transporter G fam 99.0 1.1E-09 2.3E-14 118.0 8.7 136 88-226 177-380 (1470)
386 TIGR01271 CFTR_protein cystic 99.0 1.5E-09 3.3E-14 117.4 9.0 131 91-224 441-590 (1490)
387 cd03270 ABC_UvrA_I The excisio 98.9 8.5E-09 1.8E-13 90.3 10.8 34 86-119 5-38 (226)
388 KOG0054 Multidrug resistance-a 98.9 1.4E-08 2.9E-13 107.4 13.9 145 80-227 1137-1320(1381)
389 COG2895 CysN GTPases - Sulfate 98.9 6E-10 1.3E-14 101.8 3.1 52 12-74 362-415 (431)
390 cd03278 ABC_SMC_barmotin Barmo 98.9 1.5E-09 3.2E-14 93.2 4.8 130 92-227 13-162 (197)
391 PTZ00243 ABC transporter; Prov 98.9 4.9E-09 1.1E-13 113.9 9.2 132 88-223 672-823 (1560)
392 PRK00131 aroK shikimate kinase 98.9 1.8E-09 3.8E-14 89.5 4.5 154 100-268 2-169 (175)
393 PF13671 AAA_33: AAA domain; P 98.9 3.8E-09 8.3E-14 84.9 6.2 112 104-220 1-118 (143)
394 COG4178 ABC-type uncharacteriz 98.9 1.1E-08 2.3E-13 100.3 10.1 132 91-227 408-560 (604)
395 KOG0065 Pleiotropic drug resis 98.9 1.5E-09 3.3E-14 112.7 4.4 128 93-222 808-970 (1391)
396 TIGR02322 phosphon_PhnN phosph 98.8 9E-08 1.9E-12 80.3 13.2 26 102-127 1-26 (179)
397 KOG0059 Lipid exporter ABCA1 a 98.8 1.1E-08 2.4E-13 105.8 9.0 139 81-222 569-738 (885)
398 PRK10078 ribose 1,5-bisphospho 98.8 6.3E-08 1.4E-12 82.1 11.6 149 102-268 2-174 (186)
399 COG4088 Predicted nucleotide k 98.8 3.4E-08 7.3E-13 84.7 9.7 143 104-252 3-156 (261)
400 PF08433 KTI12: Chromatin asso 98.8 3.4E-08 7.4E-13 88.8 10.4 152 104-263 3-167 (270)
401 PHA02530 pseT polynucleotide k 98.8 2.5E-08 5.4E-13 90.4 9.6 114 103-220 3-123 (300)
402 COG1102 Cmk Cytidylate kinase 98.8 3.5E-08 7.5E-13 81.5 9.1 145 104-266 2-167 (179)
403 TIGR01663 PNK-3'Pase polynucle 98.8 1.5E-08 3.2E-13 98.8 8.1 130 97-247 364-497 (526)
404 PRK04182 cytidylate kinase; Pr 98.7 6.8E-08 1.5E-12 80.5 9.7 147 104-267 2-170 (180)
405 PRK13477 bifunctional pantoate 98.7 9.6E-08 2.1E-12 92.8 12.0 51 85-141 268-318 (512)
406 KOG0054 Multidrug resistance-a 98.7 3.9E-08 8.5E-13 104.0 9.4 145 81-228 525-689 (1381)
407 KOG0062 ATPase component of AB 98.7 2.7E-08 5.9E-13 94.9 7.3 139 81-222 85-238 (582)
408 cd03271 ABC_UvrA_II The excisi 98.7 2.6E-07 5.7E-12 82.8 13.0 135 90-226 9-216 (261)
409 PRK14490 putative bifunctional 98.7 1.5E-08 3.2E-13 95.1 4.4 158 100-268 3-166 (369)
410 cd03272 ABC_SMC3_euk Eukaryoti 98.7 5.5E-08 1.2E-12 85.5 7.6 45 181-227 158-207 (243)
411 PRK13948 shikimate kinase; Pro 98.7 5.6E-08 1.2E-12 82.6 7.1 151 100-268 8-173 (182)
412 PRK05057 aroK shikimate kinase 98.7 1.2E-07 2.6E-12 79.7 8.8 150 102-268 4-169 (172)
413 KOG0060 Long-chain acyl-CoA tr 98.6 3E-07 6.6E-12 88.9 11.9 145 82-230 434-618 (659)
414 cd00820 PEPCK_HprK Phosphoenol 98.6 4.3E-08 9.2E-13 76.1 5.0 46 90-142 3-48 (107)
415 PRK08233 hypothetical protein; 98.6 4.4E-07 9.4E-12 75.8 10.8 38 101-140 2-39 (182)
416 COG4138 BtuD ABC-type cobalami 98.6 6.9E-08 1.5E-12 81.1 5.5 48 93-142 16-63 (248)
417 TIGR02173 cyt_kin_arch cytidyl 98.6 5.4E-07 1.2E-11 74.5 10.2 146 104-267 2-169 (171)
418 PRK13949 shikimate kinase; Pro 98.6 3.8E-08 8.3E-13 82.5 3.0 147 104-268 3-169 (169)
419 PRK05416 glmZ(sRNA)-inactivati 98.6 4E-07 8.7E-12 82.7 9.8 146 100-268 4-158 (288)
420 PRK13947 shikimate kinase; Pro 98.5 9.2E-07 2E-11 73.4 11.1 145 104-268 3-166 (171)
421 TIGR03238 dnd_assoc_3 dnd syst 98.5 1.7E-07 3.6E-12 89.8 7.3 51 90-142 20-70 (504)
422 KOG0927 Predicted transporter 98.5 1.8E-07 3.9E-12 89.9 6.9 142 82-226 390-553 (614)
423 cd03240 ABC_Rad50 The catalyti 98.5 5.1E-07 1.1E-11 77.9 9.1 126 92-226 13-166 (204)
424 TIGR03575 selen_PSTK_euk L-ser 98.5 1.3E-06 2.8E-11 81.0 12.2 39 104-142 1-40 (340)
425 cd03273 ABC_SMC2_euk Eukaryoti 98.5 1E-07 2.2E-12 84.5 4.5 45 181-227 166-215 (251)
426 PRK06761 hypothetical protein; 98.5 6.1E-07 1.3E-11 81.1 9.3 118 102-220 3-127 (282)
427 PRK14527 adenylate kinase; Pro 98.5 5.3E-07 1.1E-11 76.7 8.3 30 98-127 2-31 (191)
428 PRK13946 shikimate kinase; Pro 98.5 8.3E-07 1.8E-11 75.2 9.0 153 102-268 10-174 (184)
429 TIGR00017 cmk cytidylate kinas 98.5 2.7E-06 5.9E-11 74.2 12.1 25 103-127 3-27 (217)
430 cd03279 ABC_sbcCD SbcCD and ot 98.4 1.8E-07 4E-12 81.0 4.6 27 101-127 27-53 (213)
431 PRK00300 gmk guanylate kinase; 98.4 2.2E-06 4.7E-11 73.3 10.8 29 99-127 2-30 (205)
432 PRK14532 adenylate kinase; Pro 98.4 7.1E-07 1.5E-11 75.5 7.4 32 104-140 2-33 (188)
433 COG1129 MglA ABC-type sugar tr 98.4 1E-06 2.2E-11 84.9 9.2 133 92-227 275-446 (500)
434 cd04095 CysN_NoDQ_III TCysN_No 98.4 1.6E-07 3.4E-12 72.2 3.0 49 12-71 53-103 (103)
435 PRK08154 anaerobic benzoate ca 98.4 2E-06 4.2E-11 78.9 10.4 160 93-267 124-298 (309)
436 KOG0927 Predicted transporter 98.4 1.3E-06 2.9E-11 84.0 8.9 48 80-127 79-126 (614)
437 cd03243 ABC_MutS_homologs The 98.3 2.3E-07 5.1E-12 79.6 2.4 31 96-126 23-53 (202)
438 PRK03731 aroL shikimate kinase 98.3 4.4E-07 9.5E-12 75.5 3.7 147 103-268 3-168 (171)
439 cd00464 SK Shikimate kinase (S 98.3 4.9E-06 1.1E-10 67.5 8.9 34 105-143 2-35 (154)
440 COG0283 Cmk Cytidylate kinase 98.3 3.1E-05 6.7E-10 67.0 14.0 25 103-127 5-29 (222)
441 cd02020 CMPK Cytidine monophos 98.3 2.4E-06 5.2E-11 68.6 6.8 24 104-127 1-24 (147)
442 TIGR01359 UMP_CMP_kin_fam UMP- 98.3 3.4E-06 7.3E-11 70.8 7.7 109 104-220 1-124 (183)
443 cd03276 ABC_SMC6_euk Eukaryoti 98.2 1.2E-05 2.7E-10 69.0 10.8 45 180-226 108-157 (198)
444 COG4170 SapD ABC-type antimicr 98.2 3.7E-06 8.1E-11 72.7 7.4 81 86-175 17-100 (330)
445 PRK01184 hypothetical protein; 98.2 2.1E-05 4.5E-10 66.2 12.0 107 104-218 3-122 (184)
446 cd03280 ABC_MutS2 MutS2 homolo 98.2 1E-06 2.2E-11 75.6 4.0 31 93-123 18-49 (200)
447 TIGR03263 guanyl_kin guanylate 98.2 1.4E-05 3E-10 66.9 10.7 26 102-127 1-26 (180)
448 PRK07261 topology modulation p 98.2 5.9E-06 1.3E-10 69.3 8.3 99 104-221 2-100 (171)
449 cd03283 ABC_MutS-like MutS-lik 98.2 2.4E-06 5.2E-11 73.5 6.1 30 97-126 20-49 (199)
450 PRK08118 topology modulation p 98.2 3.7E-06 8.1E-11 70.3 7.0 26 104-129 3-28 (167)
451 PRK09518 bifunctional cytidyla 98.2 2.6E-05 5.6E-10 79.3 14.3 25 103-127 2-26 (712)
452 COG0703 AroK Shikimate kinase 98.2 2.8E-06 6.1E-11 71.2 6.1 105 103-218 3-113 (172)
453 COG4639 Predicted kinase [Gene 98.2 3.4E-06 7.4E-11 69.3 6.4 107 103-218 3-115 (168)
454 PRK03839 putative kinase; Prov 98.2 3.4E-06 7.3E-11 70.9 6.6 24 104-127 2-25 (180)
455 PRK06547 hypothetical protein; 98.2 4.8E-06 1E-10 70.1 7.4 39 99-142 12-50 (172)
456 PRK00698 tmk thymidylate kinas 98.2 5.9E-06 1.3E-10 70.3 8.1 35 101-135 2-36 (205)
457 TIGR01360 aden_kin_iso1 adenyl 98.2 6.6E-06 1.4E-10 69.0 8.1 25 102-126 3-27 (188)
458 PRK06217 hypothetical protein; 98.2 1.6E-05 3.4E-10 67.1 10.4 34 104-142 3-36 (183)
459 cd01672 TMPK Thymidine monopho 98.2 6E-06 1.3E-10 69.5 7.6 33 104-136 2-34 (200)
460 cd03275 ABC_SMC1_euk Eukaryoti 98.2 1.6E-05 3.4E-10 70.4 10.3 43 183-227 157-204 (247)
461 PLN02199 shikimate kinase 98.2 2.3E-06 5E-11 77.6 4.8 108 101-219 101-214 (303)
462 KOG0064 Peroxisomal long-chain 98.1 1.5E-05 3.3E-10 76.8 9.9 146 81-230 481-660 (728)
463 TIGR00235 udk uridine kinase. 98.1 3.2E-06 7E-11 72.8 4.6 30 99-128 3-32 (207)
464 cd01130 VirB11-like_ATPase Typ 98.1 3.2E-06 6.9E-11 71.7 4.4 43 96-139 19-61 (186)
465 PRK00349 uvrA excinuclease ABC 98.1 2.5E-05 5.3E-10 81.2 11.5 42 82-123 615-656 (943)
466 PRK14021 bifunctional shikimat 98.1 7.4E-06 1.6E-10 80.7 7.3 153 102-268 6-174 (542)
467 KOG0066 eIF2-interacting prote 98.1 1.8E-05 3.9E-10 74.9 9.2 123 93-226 604-748 (807)
468 COG1245 Predicted ATPase, RNas 98.1 1.7E-05 3.7E-10 75.3 9.0 121 98-225 363-498 (591)
469 TIGR02858 spore_III_AA stage I 98.1 1.4E-05 3.1E-10 71.9 8.1 39 103-142 112-150 (270)
470 PRK14530 adenylate kinase; Pro 98.1 4E-05 8.6E-10 66.4 10.6 26 102-127 3-28 (215)
471 COG2401 ABC-type ATPase fused 98.1 1.3E-05 2.8E-10 75.4 7.8 140 89-230 396-559 (593)
472 cd03705 EF1_alpha_III Domain I 98.0 3.3E-06 7.2E-11 64.8 3.1 47 12-71 56-104 (104)
473 cd03227 ABC_Class2 ABC-type Cl 98.0 7.2E-06 1.6E-10 68.0 5.1 105 96-226 15-125 (162)
474 PRK13808 adenylate kinase; Pro 98.0 1.2E-05 2.7E-10 74.2 7.0 24 104-127 2-25 (333)
475 PF06414 Zeta_toxin: Zeta toxi 98.0 3.2E-05 6.9E-10 66.2 8.8 122 100-224 13-145 (199)
476 PRK10416 signal recognition pa 98.0 3.6E-05 7.8E-10 70.9 9.7 43 100-142 112-154 (318)
477 TIGR00041 DTMP_kinase thymidyl 98.0 2.5E-05 5.5E-10 66.1 8.0 34 101-134 2-35 (195)
478 PRK12339 2-phosphoglycerate ki 98.0 3.1E-05 6.6E-10 66.6 8.3 42 101-146 2-43 (197)
479 PRK00625 shikimate kinase; Pro 98.0 2.1E-05 4.7E-10 66.2 7.0 33 104-141 2-34 (173)
480 cd03277 ABC_SMC5_euk Eukaryoti 98.0 4.5E-05 9.8E-10 66.2 9.0 43 182-226 127-174 (213)
481 cd01428 ADK Adenylate kinase ( 98.0 5.9E-05 1.3E-09 63.6 9.4 23 105-127 2-24 (194)
482 PRK08533 flagellar accessory p 97.9 8.5E-05 1.8E-09 65.3 10.5 41 98-139 20-61 (230)
483 PRK00023 cmk cytidylate kinase 97.9 0.00013 2.7E-09 64.0 11.3 26 102-127 4-29 (225)
484 COG3896 Chloramphenicol 3-O-ph 97.9 0.00015 3.2E-09 60.0 10.8 159 99-267 20-202 (205)
485 PRK05480 uridine/cytidine kina 97.9 1.5E-05 3.3E-10 68.5 5.3 40 100-141 4-43 (209)
486 TIGR01351 adk adenylate kinase 97.9 5.1E-05 1.1E-09 65.4 8.4 105 105-220 2-124 (210)
487 cd03282 ABC_MSH4_euk MutS4 hom 97.9 8.9E-06 1.9E-10 70.3 3.1 36 91-126 18-53 (204)
488 PRK02496 adk adenylate kinase; 97.9 6.7E-05 1.4E-09 63.2 8.2 24 104-127 3-26 (184)
489 PF13207 AAA_17: AAA domain; P 97.9 1.2E-05 2.6E-10 62.6 3.3 32 104-140 1-32 (121)
490 PRK14531 adenylate kinase; Pro 97.9 9.3E-05 2E-09 62.5 9.0 24 104-127 4-27 (183)
491 cd04093 HBS1_C HBS1_C: this fa 97.8 1.1E-05 2.4E-10 62.2 2.9 47 13-72 57-105 (107)
492 PRK00635 excinuclease ABC subu 97.8 8.1E-05 1.8E-09 81.4 10.3 39 82-120 601-639 (1809)
493 PLN02200 adenylate kinase fami 97.8 0.00014 3.1E-09 64.1 10.2 31 97-127 38-68 (234)
494 cd02023 UMPK Uridine monophosp 97.8 1.8E-05 3.9E-10 67.5 4.2 37 104-142 1-37 (198)
495 PF13555 AAA_29: P-loop contai 97.8 2.2E-05 4.8E-10 54.9 3.8 33 95-127 15-48 (62)
496 PRK09270 nucleoside triphospha 97.8 2.6E-05 5.6E-10 68.3 4.9 31 99-129 30-60 (229)
497 smart00382 AAA ATPases associa 97.8 3.8E-05 8.2E-10 59.5 5.3 42 101-142 1-42 (148)
498 cd02025 PanK Pantothenate kina 97.8 2E-05 4.4E-10 68.8 4.1 24 104-127 1-24 (220)
499 PRK06696 uridine kinase; Valid 97.8 3E-05 6.4E-10 67.6 5.0 43 100-142 20-62 (223)
500 PRK13974 thymidylate kinase; P 97.8 0.0001 2.2E-09 63.8 8.1 29 101-129 2-30 (212)
No 1
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-45 Score=301.07 Aligned_cols=187 Identities=60% Similarity=0.986 Sum_probs=180.6
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~ 160 (269)
|+.|+...++..+|..+..++|.++|++|+|||||||+|++|++.|+..|..+++||||++|++|++++||+.++|.+++
T Consensus 2 ni~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eni 81 (197)
T COG0529 2 NIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENI 81 (197)
T ss_pred CccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHH
Confidence 57788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccccccc
Q 024315 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPY 240 (269)
Q Consensus 161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~ 240 (269)
+++++++.+|.++|+++++++.+|++++|+.+|+++.+.+|++||+|+|+++|++|++|+||++++.|++++|+|++++|
T Consensus 82 RRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pY 161 (197)
T COG0529 82 RRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPY 161 (197)
T ss_pred HHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 241 EPPLNCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 241 e~p~~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
|+|.+||++|||+ +.++++++. |.++|
T Consensus 162 E~P~~Pel~l~t~-~~~vee~v~~i~~~l 189 (197)
T COG0529 162 EAPENPELHLDTD-RNSVEECVEQILDLL 189 (197)
T ss_pred CCCCCCeeEeccc-cCCHHHHHHHHHHHH
Confidence 9999999999994 777888887 88876
No 2
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-44 Score=290.11 Aligned_cols=190 Identities=79% Similarity=1.265 Sum_probs=183.1
Q ss_pred ccceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHH
Q 024315 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (269)
Q Consensus 79 ~~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~ 158 (269)
..|+.|+..++++.+|..|..|+|.+||++|.|||||||+|.+|.+.|...|.-++.+|||++|++|+++++|..++|.+
T Consensus 8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E 87 (207)
T KOG0635|consen 8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE 87 (207)
T ss_pred ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence 47899999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccccc
Q 024315 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDD 238 (269)
Q Consensus 159 ~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~ 238 (269)
+++++++++.+|.+.+++.+..+.+|++.+|+.+|+++.+.+|++||+|.|+++|++|+||+||+.+|.|++++|+|+++
T Consensus 88 NIRRigeVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGIdd 167 (207)
T KOG0635|consen 88 NIRRIGEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGIDD 167 (207)
T ss_pred hHHHHHHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 239 PYEPPLNCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 239 ~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
+||+|.++|+++.+..-..++++++ |+.+|
T Consensus 168 PYEaP~~cEi~l~~~~~~sp~~mae~iv~YL 198 (207)
T KOG0635|consen 168 PYEAPLNCEIVLKSHESSSPEEMAEIIVSYL 198 (207)
T ss_pred cccCCCCcEEEEccCCCCCHHHHHHHHHHHH
Confidence 9999999999999976667888888 77665
No 3
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=100.00 E-value=3.2e-34 Score=236.43 Aligned_cols=153 Identities=61% Similarity=1.033 Sum_probs=134.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeec
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC 180 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~ 180 (269)
+|.+|||+|.|||||||||+.|...|+..+..+++||||.+++.+..+++|+.++|.++++++.+++.++.+.|.+++++
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 58899999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcC
Q 024315 181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVW 253 (269)
Q Consensus 181 ~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~ 253 (269)
+.+++++.|+.+|+.+.+..|++||+++|+++|.+|++|++|++++.|++++|+|++.+||+|.+||++|||+
T Consensus 81 ~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gvd~~ye~P~~pdl~idt~ 153 (156)
T PF01583_consen 81 FISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGVDDPYEEPLNPDLVIDTD 153 (156)
T ss_dssp ----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETT
T ss_pred eccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCccccccCCCCCCCCeEEEeCC
Confidence 9999999999999999987899999999999999999999999999999999999999999999999999996
No 4
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=234.68 Aligned_cols=188 Identities=49% Similarity=0.841 Sum_probs=172.1
Q ss_pred ccceEEeeCceeeccCcce----ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChh
Q 024315 79 STNILWHKNSVDKRDRQQL----LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (269)
Q Consensus 79 ~~~~~~~~~~v~~~~r~sl----~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~ 154 (269)
..|++++...+++.+|... -...|+++|++|.||+||||+.-+|++.|...|-..+.+|||+++++|.+++||+++
T Consensus 23 stnvtyq~h~vsr~~r~~~vg~~~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~e 102 (627)
T KOG4238|consen 23 STNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPE 102 (627)
T ss_pred ccceeeehhhcchhhccceeeccCCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCch
Confidence 4678888888888888753 456799999999999999999999999997777778999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhHHHHHhcCcccc
Q 024315 155 DRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232 (269)
Q Consensus 155 ~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~ 232 (269)
+|.++++++.+++.+|.++|++.+.++.+|+.++|.-+|.+-+.. +|+++++|+|+++|++|++|++|+++|.|++.+
T Consensus 103 dreenirriaevaklfadaglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~g 182 (627)
T KOG4238|consen 103 DREENIRRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKG 182 (627)
T ss_pred hHHHHHHHHHHHHHHHhcCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcccccc
Confidence 999999999999999999999999999999999999999887654 789999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 233 FTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 233 ~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
|++|++.||+|+++|++++|+ ..+.++|++ .++.
T Consensus 183 ftgids~ye~pe~~e~vl~t~-~~~v~~cvqqvve~ 217 (627)
T KOG4238|consen 183 FTGIDSDYEKPETPERVLKTN-LSTVSDCVQQVVEL 217 (627)
T ss_pred ccccccccCCCCChhHHhhcC-CchHHHHHHHHHHH
Confidence 999999999999999999994 778899887 5443
No 5
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=242.65 Aligned_cols=244 Identities=42% Similarity=0.714 Sum_probs=217.5
Q ss_pred CCCcccCCCcceeeeeeccccc--CccccccccceeeccccccccccchhhhcccccccccccccccccccceEEeeCce
Q 024315 12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSV 89 (269)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v 89 (269)
.|..|..++.+.|.|.+..|++ +|.+++.+|.|+++||-.+. |+|+|+|..+.. ...++.|....+
T Consensus 380 ~p~~l~~g~~~~v~l~~~~pi~~e~~~~~~~lGRfilrdr~~~~-----------Tva~G~I~~~~~-~~~~~~~~~~~~ 447 (632)
T PRK05506 380 AAKTLELNEIGRCNLSTDAPIAFDPYARNRTTGSFILIDRLTNA-----------TVGAGMIDFALR-RATNVHWQASDV 447 (632)
T ss_pred CcceeCCCCEEEEEEEECCEEeeeeccccccCceEEEEeccCCc-----------eEEEEEECcccc-cccccccccccc
Confidence 3455889999999999999998 99999999999999998876 999999877544 567899999889
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKL 169 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~ 169 (269)
+...+.+...+++.+++++|.+||||||+++.|+..|...+.+.+++++|.++..+..+.+|+++++.++++++...+..
T Consensus 448 ~~~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~ 527 (632)
T PRK05506 448 SREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARL 527 (632)
T ss_pred CHHHHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 98888888888899999999999999999999999987556778999999999888877899999999999999888888
Q ss_pred HHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeE
Q 024315 170 FADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVG 249 (269)
Q Consensus 170 ~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~ 249 (269)
+...|..+++++..+.+..|+.+++++.+..+..+|+++|.+.|.+|+.+++|...+.++++.+.+++.+|++|..++++
T Consensus 528 ~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~ 607 (632)
T PRK05506 528 MADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELR 607 (632)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEE
Confidence 88999999999998888899999998876677779999999999999999999877788999999999999999989999
Q ss_pred EEcCCCcCHHHHHH-HHhhc
Q 024315 250 VHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 250 id~~~~~~~~~~~~-i~~~~ 268 (269)
||++ +.+++++.. |.+||
T Consensus 608 Id~~-~~s~~e~v~~Ii~~l 626 (632)
T PRK05506 608 LDTT-GRSPEELAEQVLELL 626 (632)
T ss_pred EeCC-CCCHHHHHHHHHHHH
Confidence 9995 667888776 88876
No 6
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.93 E-value=4.4e-25 Score=189.41 Aligned_cols=187 Identities=54% Similarity=0.901 Sum_probs=164.4
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~ 160 (269)
+..|...+++..+|+....++|.+++|+|+|||||||+++.|++.+...+.+.+++++|++++.+...+++.++++.+++
T Consensus 3 ~~~~~~~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~ 82 (198)
T PRK03846 3 NIVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENI 82 (198)
T ss_pred CcccccCCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHH
Confidence 36788888999999999999999999999999999999999999987777889999999998777667889999999999
Q ss_pred HHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccccccc
Q 024315 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPY 240 (269)
Q Consensus 161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~ 240 (269)
+++...+..+...|..++.++.++.+..|+.+++++...+++.||+++|.+.+.+|+++.++...+.+++..+...+.+|
T Consensus 83 ~~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~Y 162 (198)
T PRK03846 83 RRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVY 162 (198)
T ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCcccccccC
Confidence 99888888888889988888888888999999999987777679999999999999887788777677888888899899
Q ss_pred CCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 241 EPPLNCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 241 e~p~~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
++|..++++|||+ ..+++++.. |.++|
T Consensus 163 ~~p~~ad~~Idt~-~~~~~~vv~~Il~~l 190 (198)
T PRK03846 163 EAPESPEIHLDTG-EQLVTNLVEQLLDYL 190 (198)
T ss_pred CCCCCCCEEEECC-CCCHHHHHHHHHHHH
Confidence 9999999999995 677777775 87765
No 7
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.92 E-value=2e-24 Score=182.87 Aligned_cols=182 Identities=58% Similarity=0.948 Sum_probs=161.1
Q ss_pred eeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHH
Q 024315 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164 (269)
Q Consensus 85 ~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~ 164 (269)
... +++.+|++...++|++++|+|++||||||+++.|.+.+...+.+.++++++++++.+..+.+|..+++.++++.+.
T Consensus 2 ~~~-~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~ 80 (184)
T TIGR00455 2 HPA-ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIG 80 (184)
T ss_pred CCc-CCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHH
Confidence 344 7788888889999999999999999999999999999876666688999999998888888899999998998888
Q ss_pred HHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCC
Q 024315 165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPL 244 (269)
Q Consensus 165 ~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~ 244 (269)
.++..+...|..+++++..+.+..|+.++.++...++..+|+++|.+.|..|+.+++|...+.+++..+.+.+..|++|.
T Consensus 81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~ 160 (184)
T TIGR00455 81 EVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPE 160 (184)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCC
Confidence 88888889999999999988889999999998877788899999999999999888888777888888888999999999
Q ss_pred CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 245 NCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 245 ~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
.++++|||+ ..+++++.. |.+||
T Consensus 161 ~adl~Idt~-~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 161 NPEVVLDTD-QNDREECVGQIIEKL 184 (184)
T ss_pred CCcEEEECC-CCCHHHHHHHHHHhC
Confidence 999999995 677877775 88876
No 8
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.87 E-value=2.8e-21 Score=158.84 Aligned_cols=149 Identities=66% Similarity=1.115 Sum_probs=131.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~ 183 (269)
+++|+|++||||||+++.|++.+..++...+.++++.+++.+....++.++++.+.++.+...+..+...|..++++...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 47899999999999999999998756666788999999887777778888888887777777777777889889998888
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEc
Q 024315 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHV 252 (269)
Q Consensus 184 ~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~ 252 (269)
.....|..++++++..++..+++++|+++|.+|+.+++|...+.|.+.++.|++.+||+|.++|+++|+
T Consensus 81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd02027 81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGFTGIDDPYEAPENPDLVLDT 149 (149)
T ss_pred CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCccccCCCCCCCCCCeeEecC
Confidence 777888888888876678889999999999999999999999999999999999999999999999885
No 9
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.86 E-value=2.4e-20 Score=156.58 Aligned_cols=166 Identities=51% Similarity=0.824 Sum_probs=137.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv 179 (269)
|+|++++|+|++||||||+++.|++.+...+...+++++|.+++.+...+++..+++..+++++..++..+...|..+++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV 81 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 78999999999999999999999999975555577899998887666667888888888888887777777777887777
Q ss_pred ccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHH
Q 024315 180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELA 259 (269)
Q Consensus 180 ~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~ 259 (269)
+..+++...++.++.+.. ++..+|+++|.+.|.+|..+.++...+.+++..+...+.+|++|..+++.|+++ ..+++
T Consensus 82 ~~~~~~~~~~~~l~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~~-~~~~~ 158 (175)
T PRK00889 82 SAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRTD-LESLE 158 (175)
T ss_pred ecCCCCHHHHHHHHhhcC--CeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEECC-CCCHH
Confidence 777777777777777654 466799999999999999888887777778888888889999998899999996 56677
Q ss_pred HHHH-HHhhc
Q 024315 260 ETWR-ITKWL 268 (269)
Q Consensus 260 ~~~~-i~~~~ 268 (269)
++.. |.+||
T Consensus 159 ~~~~~i~~~l 168 (175)
T PRK00889 159 ESVDKVLQKL 168 (175)
T ss_pred HHHHHHHHHH
Confidence 7776 88876
No 10
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.82 E-value=2.7e-19 Score=175.39 Aligned_cols=223 Identities=40% Similarity=0.590 Sum_probs=167.2
Q ss_pred ccccceeeccccccccccchhhhcccccccccccccccccccceEEeeCceeeccCc--ceecCCCeEEEEEcCCCChHH
Q 024315 39 SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--QLLQQKGCVIWITGLSGSGKS 116 (269)
Q Consensus 39 ~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v~~~~r~--sl~~~~g~~i~l~G~sGsGKS 116 (269)
..-+.+...+..++.. +....+|+.|......+....-.|....|...-+. .-..++|.+|+|+|++|||||
T Consensus 333 ~~~~~~~~~~~cph~~------~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKS 406 (568)
T PRK05537 333 QDKAQYVPVDEVPQGA------TVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKS 406 (568)
T ss_pred cCCCeEEecCcCCCCc------ceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHH
Confidence 4444555555444431 22346666655443322211112222333322111 234578999999999999999
Q ss_pred HHHHHHHHhhcc-CCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHh
Q 024315 117 TLACALSQALHW-RGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195 (269)
Q Consensus 117 Tla~~L~~~l~~-~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~l 195 (269)
|+++.|++.|.. .+...+++|+|.+++.+..+.+|+.+++..+++++...+......|..++++..+++...|+..+++
T Consensus 407 Tia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~l 486 (568)
T PRK05537 407 TIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREM 486 (568)
T ss_pred HHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHH
Confidence 999999999975 4555789999999888888889999999888888877777777889999998889999888888888
Q ss_pred CCC-CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 196 LPE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 196 l~~-~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
+.. ..++.||+++|++.|.+|++++++...+.+.+..+.+.+.+|++|.+++++|||+ ..+++++.. |.++|
T Consensus 487 lk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt~-~~s~~eiv~~Il~~L 560 (568)
T PRK05537 487 IEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVIDTT-NVTPDECAHKILLYL 560 (568)
T ss_pred HhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEECC-CCCHHHHHHHHHHHH
Confidence 876 3466799999999999999988887666778888999999999999999999995 677888877 77665
No 11
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.6e-17 Score=152.41 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=104.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED-- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~-- 155 (269)
.|+...++.+.+.+..++++.+|++++|+||||||||||+++|+|+. .+.+|.|+++|.++.. ...+++++..|.
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA 85 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA 85 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhHCCEEEEeCCcc
Confidence 46666676655788899999999999999999999999999999977 6779999999998864 111122222221
Q ss_pred ---------------------HHHHHHHHHHHHHHHHhCCcc-eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 156 ---------------------RVENIRRIGEVAKLFADAGVI-CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 156 ---------------------~~~~~~~l~~~a~~~~~~g~~-~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
+.+..+++.+++..+.-..+. -....++++++|| +.+|+++.+|++ +++|||++.
T Consensus 86 LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v--~L~DEPlSn 163 (338)
T COG3839 86 LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV--FLLDEPLSN 163 (338)
T ss_pred ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE--EEecCchhH
Confidence 123344555555554333322 2355678888888 799999999998 899999999
Q ss_pred HHhcChhhHHHH
Q 024315 213 CEARDPKGLYKL 224 (269)
Q Consensus 213 l~~R~~k~l~~~ 224 (269)
++.+.+..+...
T Consensus 164 LDa~lR~~mr~e 175 (338)
T COG3839 164 LDAKLRVLMRSE 175 (338)
T ss_pred hhHHHHHHHHHH
Confidence 999988765433
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.73 E-value=1e-17 Score=146.53 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=107.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.|+++.+....+.++++|++++|++++++|||||||||+++.+.+++ .+.+|.|+++|.+++. .|++.+||.-|.
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I~i~g~~i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEILIDGEDISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence 57888888899999999999999999999999999999999999988 6789999999999874 456666665542
Q ss_pred H--------HHHHHHH-----------H-HHHHHHHhCCcc------eeeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 156 R--------VENIRRI-----------G-EVAKLFADAGVI------CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 156 ~--------~~~~~~l-----------~-~~a~~~~~~g~~------~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
. .+++..+ . ..-.++...|+. -....+|++++|| -.+|+++.+|++ ++||+
T Consensus 84 igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i--lLMDE 161 (309)
T COG1125 84 IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI--LLMDE 161 (309)
T ss_pred cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe--EeecC
Confidence 2 1111111 1 112223333332 2355567888888 599999999999 99999
Q ss_pred ChhHHHhcChhhHHHH
Q 024315 209 PLQVCEARDPKGLYKL 224 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~ 224 (269)
|+..+++=.++.+...
T Consensus 162 PFgALDpI~R~~lQ~e 177 (309)
T COG1125 162 PFGALDPITRKQLQEE 177 (309)
T ss_pred CccccChhhHHHHHHH
Confidence 9999999888776543
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.73 E-value=1.1e-17 Score=154.17 Aligned_cols=140 Identities=21% Similarity=0.245 Sum_probs=102.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhHH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDRV 157 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~~ 157 (269)
.++...++.+.+.+++++.+++||++.|+|||||||||++++|+|+. .|.+|.|.++|.++.. .-.+++++..|+.+
T Consensus 9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA 87 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSGEILLDGEDITDVPPEKRPIGMVFQSYA 87 (352)
T ss_pred EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhhcccceeecCcc
Confidence 46777788899999999999999999999999999999999999977 6789999999999863 11222333333221
Q ss_pred --------H----------------HHHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 158 --------E----------------NIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 158 --------~----------------~~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
+ ..+++.+ .+...++.. ....+++++++| +.+|+++.+|++ +++||
T Consensus 88 LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e---~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v--LLLDE 162 (352)
T COG3842 88 LFPHMTVEENVAFGLKVRKKLKKAEIKARVEE---ALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV--LLLDE 162 (352)
T ss_pred cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHH---HHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch--hhhcC
Confidence 1 1112222 222222222 244557778888 699999999999 89999
Q ss_pred ChhHHHhcChhhHHHHH
Q 024315 209 PLQVCEARDPKGLYKLA 225 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~ 225 (269)
|+..++.+.++.+...+
T Consensus 163 PlSaLD~kLR~~mr~El 179 (352)
T COG3842 163 PLSALDAKLREQMRKEL 179 (352)
T ss_pred cccchhHHHHHHHHHHH
Confidence 99999999987755433
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.72 E-value=8.6e-18 Score=148.91 Aligned_cols=144 Identities=21% Similarity=0.216 Sum_probs=104.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
+++++.+......++.||++++|++++|+||||||||||+|+|++.+. +.+|.|+++|.++.. .+.+.++|.+|.
T Consensus 6 ~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~ 84 (258)
T COG1120 6 ENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIASLSPKELAKKLAYVPQS 84 (258)
T ss_pred EEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhhcCHHHHhhhEEEeccC
Confidence 578888888889999999999999999999999999999999999884 779999999998763 333333333332
Q ss_pred HH-------------------HHHH-----HHHHHHHHHHhCCcce----eeccCChHHHHHH-HHHHhCCCCCccEEEE
Q 024315 156 RV-------------------ENIR-----RIGEVAKLFADAGVIC----IACLISPYRKDRD-ACRSMLPEGDFIEVFM 206 (269)
Q Consensus 156 ~~-------------------~~~~-----~l~~~a~~~~~~g~~~----iv~~~~~~~~~r~-~ar~ll~~~~~~~i~l 206 (269)
.. .++. -...+...+...++.. .+..+|++++||. ++++++.++++ +++
T Consensus 85 ~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i--LLL 162 (258)
T COG1120 85 PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI--LLL 162 (258)
T ss_pred CCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE--EEe
Confidence 10 0000 0001222233334422 2556678888885 88888999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++-+.+-.+.+..+
T Consensus 163 DEPTs~LDi~~Q~evl~ll~ 182 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLR 182 (258)
T ss_pred CCCccccCHHHHHHHHHHHH
Confidence 99999999998877655544
No 15
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.72 E-value=3.9e-16 Score=131.11 Aligned_cols=166 Identities=34% Similarity=0.545 Sum_probs=122.4
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCccee
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI 178 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~i 178 (269)
.++|.+++|+|++||||||+++.|.+.+...+.+.++++++.++..+. ..++......+...+...+...+...|..++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI 82 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVI 82 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 478999999999999999999999999976777889999988875332 2345444444444444445555556777777
Q ss_pred eccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCH
Q 024315 179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFEL 258 (269)
Q Consensus 179 v~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~ 258 (269)
++..+..+..+...+.++.. +..+|+++|.+.+.+|..++++.....+.+..+.+.+.+++.+. ++++|+|+...++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~-Ad~vI~~~~~~~~ 159 (176)
T PRK05541 83 VTTISMFDEIYAYNRKHLPN--YFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPK-ADLVIDNSCRTSL 159 (176)
T ss_pred EEeCCcHHHHHHHHHhhcCC--eEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCC-CCEEEeCCCCCCH
Confidence 77776655566666766643 45689999999999999888887777778888777777777665 5999999643577
Q ss_pred HHHHH-HHhhc
Q 024315 259 AETWR-ITKWL 268 (269)
Q Consensus 259 ~~~~~-i~~~~ 268 (269)
+++.. |.+.|
T Consensus 160 ~~~v~~i~~~l 170 (176)
T PRK05541 160 DEKVDLILNKL 170 (176)
T ss_pred HHHHHHHHHHH
Confidence 77665 65543
No 16
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=2.7e-17 Score=140.92 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=106.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
.|+...++.....+.+++++++|++++|+||||||||||+++|.++- .+.+|.|.++|.++.. .+++.+|+..|
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ 84 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQ 84 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceEEECCEeccchhhHHHHHHhcCeecc
Confidence 56777888999999999999999999999999999999999999955 6779999999976642 24455565555
Q ss_pred hHH--------HHHH-------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 155 DRV--------ENIR-------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 155 ~~~--------~~~~-------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
... +++. .......++...|+.. +...+|++++|| +++|+++-+|++ +++|+
T Consensus 85 ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v--mLFDE 162 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV--MLFDE 162 (240)
T ss_pred cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE--EeecC
Confidence 331 1110 0011223445555533 456678888888 699999999999 99999
Q ss_pred ChhHHHhcChhhHHH
Q 024315 209 PLQVCEARDPKGLYK 223 (269)
Q Consensus 209 p~~~l~~R~~k~l~~ 223 (269)
|++.|++.......+
T Consensus 163 PTSALDPElv~EVL~ 177 (240)
T COG1126 163 PTSALDPELVGEVLD 177 (240)
T ss_pred CcccCCHHHHHHHHH
Confidence 999999998877443
No 17
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2e-17 Score=145.97 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=106.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc-ccCCCCChhhH--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NRDLSFKAEDR-- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l-~~~~g~~~~~~-- 156 (269)
.|+.+.+....+.+++++.+.+|++++|+||||||||||+|++.|++ .|.+|.|.+.|.+..... +..++|.+|..
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~ 86 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV 86 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcceEEEccccccccccCCeEEEcCccccc
Confidence 56777776446889999999999999999999999999999999988 467999999998754322 12345555522
Q ss_pred -----------H--------HHHHHH-----HHHHHHHHhCCccee----eccCChHHHHHH-HHHHhCCCCCccEEEEe
Q 024315 157 -----------V--------ENIRRI-----GEVAKLFADAGVICI----ACLISPYRKDRD-ACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 157 -----------~--------~~~~~l-----~~~a~~~~~~g~~~i----v~~~~~~~~~r~-~ar~ll~~~~~~~i~ld 207 (269)
. .++++. ..+...+...|...+ +..+|++++||. +||+++.++++ +++|
T Consensus 87 d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l--llLD 164 (254)
T COG1121 87 DRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL--LLLD 164 (254)
T ss_pred CCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE--EEec
Confidence 0 011110 223344455555432 345678888884 99999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
||+..+|....+.+|+.+.
T Consensus 165 EP~~gvD~~~~~~i~~lL~ 183 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLK 183 (254)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999999999999886654
No 18
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.7e-17 Score=142.35 Aligned_cols=141 Identities=20% Similarity=0.246 Sum_probs=100.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-- 157 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-- 157 (269)
.++...+..+.+.+++++.+.+||++.|+||||||||||++.|+|+. .+.+|.|.++|..+. +-.++.+|..|+..
T Consensus 7 ~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~-~p~~~~~~vFQ~~~Ll 84 (248)
T COG1116 7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVT-GPGPDIGYVFQEDALL 84 (248)
T ss_pred EeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCcccC-CCCCCEEEEeccCccc
Confidence 35666676788999999999999999999999999999999999987 577999999998772 22222233222110
Q ss_pred ------HHH------------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 158 ------ENI------------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 158 ------~~~------------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
+++ .+.......+...|+.. .....|++.+|| .++|+++.++++ +++|||+..++
T Consensus 85 PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l--LLlDEPFgALD 162 (248)
T COG1116 85 PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL--LLLDEPFGALD 162 (248)
T ss_pred chhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE--EEEcCCcchhh
Confidence 000 00012223334444432 344567777777 699999999999 99999999999
Q ss_pred hcChhhHHHH
Q 024315 215 ARDPKGLYKL 224 (269)
Q Consensus 215 ~R~~k~l~~~ 224 (269)
.-.+..+++.
T Consensus 163 alTR~~lq~~ 172 (248)
T COG1116 163 ALTREELQDE 172 (248)
T ss_pred HHHHHHHHHH
Confidence 9888776544
No 19
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1e-16 Score=156.88 Aligned_cols=163 Identities=20% Similarity=0.211 Sum_probs=113.7
Q ss_pred ceeeccccccccccchhhhcccccccccccccccccccceEEeeCceeeccCc--------ceecCCCeEEEEEcCCCCh
Q 024315 43 SLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGLSGSG 114 (269)
Q Consensus 43 ~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v~~~~r~--------sl~~~~g~~i~l~G~sGsG 114 (269)
=|+++||.|.+...|. ..+. .....++|+++.|+|+.|. +|++++|++++|+||||||
T Consensus 441 vFel~dr~P~i~~~G~------------~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsG 506 (716)
T KOG0058|consen 441 VFELMDRKPRIPLTGT------------LAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSG 506 (716)
T ss_pred HHHHhccCCCCCCCCc------------cccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCC
Confidence 5999999999853332 2211 1235677888888877664 7999999999999999999
Q ss_pred HHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH------------HHHHHHHH--HH
Q 024315 115 KSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN------------IRRIGEVA--KL 169 (269)
Q Consensus 115 KSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~------------~~~l~~~a--~~ 169 (269)
|||++..|++++ +|.+|.|.+||.+++. .+++.+++..||. +++ +....+.+ +.
T Consensus 507 KSTiasLL~rfY-~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~ 585 (716)
T KOG0058|consen 507 KSTIASLLLRFY-DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHE 585 (716)
T ss_pred HHHHHHHHHHhc-CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHH
Confidence 999999999988 6889999999999874 4555555555432 111 22222221 11
Q ss_pred HH---hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315 170 FA---DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 170 ~~---~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~ 222 (269)
|. ..|.... ....+++++|| ++||+++.+|.+ +++||-+..+|.....-..
T Consensus 586 FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V--LILDEATSALDaeSE~lVq 644 (716)
T KOG0058|consen 586 FITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV--LILDEATSALDAESEYLVQ 644 (716)
T ss_pred HHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE--EEEechhhhcchhhHHHHH
Confidence 11 1122222 23457777877 799999999999 8999999999877654443
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.5e-16 Score=142.44 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=104.1
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe---ecCc--ccccCCCCChhh
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRH--GLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~---~~~~--~l~~~~g~~~~~ 155 (269)
+++...+.+.+.+++++.++.|++++|.||||||||||+++|+|+. .|..|.|.|+|. +..+ .-.+.+||..|+
T Consensus 7 ~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~ 85 (345)
T COG1118 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQH 85 (345)
T ss_pred hhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCEeccchhccchhhcceeEEEec
Confidence 4555566788888999999999999999999999999999999987 577999999998 4332 111233444433
Q ss_pred HH-------------------------HHHHHHHHHHHHHHhCCcce-eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 156 RV-------------------------ENIRRIGEVAKLFADAGVIC-IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 156 ~~-------------------------~~~~~l~~~a~~~~~~g~~~-iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
.+ +...++.+...+++-.++.. ....+++++++| +.+|+++.+|++ +++||
T Consensus 86 YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v--LLLDE 163 (345)
T COG1118 86 YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV--LLLDE 163 (345)
T ss_pred hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe--EeecC
Confidence 21 22223333333444333322 355567788887 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++...++.+.+.++
T Consensus 164 Pf~ALDa~vr~~lr~wLr 181 (345)
T COG1118 164 PFGALDAKVRKELRRWLR 181 (345)
T ss_pred CchhhhHHHHHHHHHHHH
Confidence 999999999998876665
No 21
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.64 E-value=9.4e-16 Score=129.10 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=104.7
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCC
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSF 151 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~ 151 (269)
++++..+. +..+.+++++.+++|+++.++|||||||||++|.|.+.. .|.+|.++++|.++.. .+++.+|+
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv 83 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHDLSRLKGREIPFLRRQIGV 83 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceEEECCeecccccccccchhhheeee
Confidence 44555553 333778899999999999999999999999999999987 5779999999999863 45666776
Q ss_pred ChhhHH--------HHHHH------------HHHHHHHHHhCCc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 152 KAEDRV--------ENIRR------------IGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 152 ~~~~~~--------~~~~~------------l~~~a~~~~~~g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
..|+.. +++.. -..+...+..-|+ ......+|++++|| .++|+++.+|++ ++-
T Consensus 84 VFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~v--LlA 161 (223)
T COG2884 84 VFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAV--LLA 161 (223)
T ss_pred EeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCe--Eee
Confidence 666542 11000 0123333433444 23455668888888 699999999998 899
Q ss_pred eCChhHHHhcChhhHHHH
Q 024315 207 DVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~ 224 (269)
|||+..+++....++...
T Consensus 162 DEPTGNLDp~~s~~im~l 179 (223)
T COG2884 162 DEPTGNLDPDLSWEIMRL 179 (223)
T ss_pred cCCCCCCChHHHHHHHHH
Confidence 999999999998885544
No 22
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.64 E-value=2.7e-15 Score=130.64 Aligned_cols=136 Identities=23% Similarity=0.304 Sum_probs=99.0
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------cc-ccCCCCChhhH----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GL-NRDLSFKAEDR---- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l-~~~~g~~~~~~---- 156 (269)
+.+...++|.+++|++++|+||||||||||++.|.++. .|.+|.+.++|.++.. .+ +..+||..|..
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 67788999999999999999999999999999999977 4689999999977752 11 22334433321
Q ss_pred ----HHHHH------------HHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 157 ----VENIR------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 157 ----~~~~~------------~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
.+++. .......++...|+. ..+..+|++++|| .++|+++.+|++ |+.|||+..++
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i--ilADEPTgnLD 174 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI--ILADEPTGNLD 174 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe--EEeeCccccCC
Confidence 12211 111222333444553 2355678888888 699999999999 99999999999
Q ss_pred hcChhhHHHHHhc
Q 024315 215 ARDPKGLYKLARE 227 (269)
Q Consensus 215 ~R~~k~l~~~~r~ 227 (269)
....+.+.+..++
T Consensus 175 ~~t~~~V~~ll~~ 187 (226)
T COG1136 175 SKTAKEVLELLRE 187 (226)
T ss_pred hHHHHHHHHHHHH
Confidence 9998886655543
No 23
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=8.5e-16 Score=132.89 Aligned_cols=144 Identities=18% Similarity=0.251 Sum_probs=104.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
.+++..++...+...+++.+++|+++.|+|+||+|||||+++|++.++ +.+|.|.++|.++.. ..+..++|.+|
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe 85 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGIAYVPE 85 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence 467777888999999999999999999999999999999999999884 558999999999874 23445566666
Q ss_pred hHH--------HHHH-------------H-HHHHHHHHHhCC--cceeeccCChH-HHHHHHHHHhCCCCCccEEEEeCC
Q 024315 155 DRV--------ENIR-------------R-IGEVAKLFADAG--VICIACLISPY-RKDRDACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 155 ~~~--------~~~~-------------~-l~~~a~~~~~~g--~~~iv~~~~~~-~~~r~~ar~ll~~~~~~~i~ld~p 209 (269)
.|. +++. . +.++..+|.... ........|++ +++..++|+++.+|++ +++|||
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl--LLLDEP 163 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL--LLLDEP 163 (237)
T ss_pred cccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE--EEecCC
Confidence 542 1111 0 112222222110 01122233444 5556899999999999 999999
Q ss_pred hhHHHhcChhhHHHHHh
Q 024315 210 LQVCEARDPKGLYKLAR 226 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r 226 (269)
.+.+.+...+.+++.++
T Consensus 164 s~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 164 SEGLAPKIVEEIFEAIK 180 (237)
T ss_pred ccCcCHHHHHHHHHHHH
Confidence 99999999988775544
No 24
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.63 E-value=3.7e-15 Score=125.81 Aligned_cols=133 Identities=22% Similarity=0.232 Sum_probs=96.2
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~ 160 (269)
++.+.+......+..++.+++|++++|+|+||||||||++.|++.+ .+.+|.|.++|.++. .+....+...+
T Consensus 4 ~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~-------~~~~~~~~~~i 75 (180)
T cd03214 4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLA-------SLSPKELARKI 75 (180)
T ss_pred EEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC-------cCCHHHHHHHH
Confidence 4555554455678889999999999999999999999999999987 467899999998875 23332222223
Q ss_pred HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 161 RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 161 ~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
..+.+ .+...++.. .+...++++++| ..+++++.++++ +++|+|+..++....+.+++.++
T Consensus 76 ~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP~~~LD~~~~~~~~~~l~ 141 (180)
T cd03214 76 AYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPI--LLLDEPTSHLDIAHQIELLELLR 141 (180)
T ss_pred hHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 33322 333333322 233456666666 689999999999 99999999999888887776554
No 25
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.6e-15 Score=131.61 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=101.6
Q ss_pred cceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCC
Q 024315 80 TNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSF 151 (269)
Q Consensus 80 ~~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~ 151 (269)
.+++..+ ....+.+.+++.+++||+++|+|+||||||||++.|.++. ++..|.|.++|.++.. .++.++||
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGm 85 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLRRDIGM 85 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcceEEecccchhccchHHHHHHHHhcee
Confidence 4555666 5677889999999999999999999999999999999966 6889999999987753 12333443
Q ss_pred ChhhHH--------HH--HHHH------------------HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCC
Q 024315 152 KAEDRV--------EN--IRRI------------------GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPE 198 (269)
Q Consensus 152 ~~~~~~--------~~--~~~l------------------~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~ 198 (269)
-.|... ++ ..++ .+....+...|+... ...+++++++| .++|+++.+
T Consensus 86 IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~ 165 (258)
T COG3638 86 IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQ 165 (258)
T ss_pred EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcC
Confidence 333110 00 0000 011122333333221 34467888888 799999999
Q ss_pred CCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++ |+-|||.+.+++...+...+.++
T Consensus 166 pki--ILADEPvasLDp~~a~~Vm~~l~ 191 (258)
T COG3638 166 PKI--ILADEPVASLDPESAKKVMDILK 191 (258)
T ss_pred CCE--EecCCcccccChhhHHHHHHHHH
Confidence 999 99999999999999888654443
No 26
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=3.5e-15 Score=120.75 Aligned_cols=148 Identities=26% Similarity=0.323 Sum_probs=120.0
Q ss_pred EcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccC
Q 024315 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLI 182 (269)
Q Consensus 108 ~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~ 182 (269)
+|.+||||||++..|+..|.. -+++||++.. .+..++.+++++|..|+.++...+......+-..++.++
T Consensus 1 MGVsG~GKStvg~~lA~~lg~-----~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGA-----KFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCC-----ceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence 489999999999999999863 4899999864 345667899999999999998877776666767888899
Q ss_pred ChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccccc---ccCCCCCCCeEEEcCCCcCHH
Q 024315 183 SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDD---PYEPPLNCEVGVHVWYRFELA 259 (269)
Q Consensus 183 ~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~---~~e~p~~~e~~id~~~~~~~~ 259 (269)
...+..|+++|.......| ||++.+.+.+.+|. ..|+|+++....+++ ..|+|...|-+|..+-+.+++
T Consensus 76 ALKr~YRD~LR~~~~~~~F--v~L~g~~~~i~~Rm------~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi~~~~e 147 (161)
T COG3265 76 ALKRSYRDLLREANPGLRF--VYLDGDFDLILERM------KARKGHFMPASLLDSQFATLEEPGADEDVLTIDIDQPPE 147 (161)
T ss_pred HHHHHHHHHHhccCCCeEE--EEecCCHHHHHHHH------HhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeCCCCHH
Confidence 9999999999997776555 99999999999998 889999998766664 567888766444443467788
Q ss_pred HHHH-HHhhc
Q 024315 260 ETWR-ITKWL 268 (269)
Q Consensus 260 ~~~~-i~~~~ 268 (269)
++.. +.+||
T Consensus 148 ~vv~~~~~~l 157 (161)
T COG3265 148 EVVAQALAWL 157 (161)
T ss_pred HHHHHHHHHH
Confidence 8877 77776
No 27
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=1.5e-16 Score=138.50 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=98.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---------cccc---
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---------GLNR--- 147 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---------~l~~--- 147 (269)
.+++..++.+.+.+++++.+.+|++++|+|||||||||+.+.|.+.+ .|.+|.|.++|+++.. ++.+
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccceeecc
Confidence 56788889999999999999999999999999999999999999999 5779999999998862 1100
Q ss_pred ----CCCCChhhHH--------------------HHHHHHHH-HHHHHHhCCccee----eccCChHHHH-HHHHHHhCC
Q 024315 148 ----DLSFKAEDRV--------------------ENIRRIGE-VAKLFADAGVICI----ACLISPYRKD-RDACRSMLP 197 (269)
Q Consensus 148 ----~~g~~~~~~~--------------------~~~~~l~~-~a~~~~~~g~~~i----v~~~~~~~~~-r~~ar~ll~ 197 (269)
-.+++.-+.. +..+...+ ...++...|+... ...++.+++. .+++++++.
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 0011111100 00011111 1223333444332 2223333333 489999999
Q ss_pred CCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 198 ~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|++ +++|||.+.+-......+.+.++
T Consensus 167 ~P~l--LLLDEPaAGln~~e~~~l~~~i~ 193 (250)
T COG0411 167 QPKL--LLLDEPAAGLNPEETEELAELIR 193 (250)
T ss_pred CCCE--EEecCccCCCCHHHHHHHHHHHH
Confidence 9999 99999999998888777665544
No 28
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=2.3e-15 Score=154.75 Aligned_cols=171 Identities=21% Similarity=0.253 Sum_probs=116.7
Q ss_pred ccccceeeccccccccccchhhhcccccccccccccccccccceEEeeCceeeccCc--------ceecCCCeEEEEEcC
Q 024315 39 SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGL 110 (269)
Q Consensus 39 ~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v~~~~r~--------sl~~~~g~~i~l~G~ 110 (269)
....=|++|||.+.+++.+ .+.- . ......++++.++.++|+.|. ++.+++|++++|+|+
T Consensus 320 aa~~I~~~i~~~~~i~~~~-~~~~-------~----~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~ 387 (1228)
T KOG0055|consen 320 AAYRIFETIDRKPSIDPYS-KGGR-------V----LSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGP 387 (1228)
T ss_pred chHHHHHHhcCCCCCCccc-ccCC-------c----ccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECC
Confidence 3444688999999986543 1110 0 111235677777777777664 799999999999999
Q ss_pred CCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHHHHH---------HHHHH---
Q 024315 111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VENIRR---------IGEVA--- 167 (269)
Q Consensus 111 sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~~~~---------l~~~a--- 167 (269)
|||||||+.+.|+|++ +|.+|.|++||.+++. .++..+|++.|+. .++++. +.+.+
T Consensus 388 SGsGKST~i~LL~Rfy-dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a 466 (1228)
T KOG0055|consen 388 SGSGKSTLIQLLARFY-DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA 466 (1228)
T ss_pred CCCCHHHHHHHHHHhc-CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence 9999999999999988 6789999999999874 5666667666652 122111 11111
Q ss_pred --HHH---HhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 168 --KLF---ADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 168 --~~~---~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
..| ...|.... ...++++++|| +++|+++.+|++ +++|||+..||....+-..++
T Consensus 467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I--LLLDEaTSaLD~~se~~Vq~A 531 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI--LLLDEATSALDAESERVVQEA 531 (1228)
T ss_pred cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE--EEecCcccccCHHHHHHHHHH
Confidence 111 11122111 22256777777 799999999999 999999999998776654433
No 29
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=6.5e-16 Score=130.21 Aligned_cols=133 Identities=21% Similarity=0.267 Sum_probs=93.0
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc------cccCCCCChh
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~------l~~~~g~~~~ 154 (269)
++.+.+......+..++++.+|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++... .+..++|.++
T Consensus 5 ~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 83 (178)
T cd03229 5 NVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQ 83 (178)
T ss_pred EEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEEEEec
Confidence 4555554555678889999999999999999999999999999987 46689999999876421 1111222222
Q ss_pred hHHHHHHHHHHHHHHHHhCCcceeecc-CChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 155 DRVENIRRIGEVAKLFADAGVICIACL-ISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 155 ~~~~~~~~l~~~a~~~~~~g~~~iv~~-~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+. ..+....+...... .++++++| ..+++++.++++ +++|||+..++....+.+.+.+++
T Consensus 84 ~~-----------~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~l--lilDEP~~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 84 DF-----------ALFPHLTVLENIALGLSGGQQQRVALARALAMDPDV--LLLDEPTSALDPITRREVRALLKS 145 (178)
T ss_pred CC-----------ccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 11 11111111112221 56666666 689999999999 999999999999888887766553
No 30
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.60 E-value=2.5e-15 Score=125.13 Aligned_cols=122 Identities=22% Similarity=0.290 Sum_probs=90.9
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~ 160 (269)
++.+.+......+..++++++|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++.. ....+. .
T Consensus 5 ~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~-------~~~~~~---~ 73 (163)
T cd03216 5 GITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSF-------ASPRDA---R 73 (163)
T ss_pred EEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCc-------CCHHHH---H
Confidence 4555555556778889999999999999999999999999999988 4668999999987641 111110 0
Q ss_pred HHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 161 RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
...+ .++...++++++| ..+++++.++++ +++|+|+..++....+.+.+.+++
T Consensus 74 -----------~~~i-~~~~qLS~G~~qrl~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 74 -----------RAGI-AMVYQLSVGERQMVEIARALARNARL--LILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred -----------hcCe-EEEEecCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHHH
Confidence 0011 1111155666666 689999999999 999999999999988887766653
No 31
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.4e-14 Score=124.07 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=112.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CC---ccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RG---KLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~---~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.++...+..++++.++++++++|+|||||||||+++.|.+.... ++ .|.|.++|.++.. .+++.+
T Consensus 11 ~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v 90 (253)
T COG1117 11 RDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV 90 (253)
T ss_pred cceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence 5677888889999999999999999999999999999999999986531 11 5899999999874 345555
Q ss_pred CCChhhH-------HHHH-----------HHHHH-HHHHHHhCCcce--------eeccCChHHHHHH-HHHHhCCCCCc
Q 024315 150 SFKAEDR-------VENI-----------RRIGE-VAKLFADAGVIC--------IACLISPYRKDRD-ACRSMLPEGDF 201 (269)
Q Consensus 150 g~~~~~~-------~~~~-----------~~l~~-~a~~~~~~g~~~--------iv~~~~~~~~~r~-~ar~ll~~~~~ 201 (269)
|+..|.. .+++ ..+.+ +...+..+.+.. -...++++++||- ++|+++-+|++
T Consensus 91 GMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeV 170 (253)
T COG1117 91 GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEV 170 (253)
T ss_pred eeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcE
Confidence 5554421 0111 01111 111222223221 2234577888885 89999999998
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHHHHhh
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKW 267 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~i~~~ 267 (269)
+++|+|.+.+++-....+.+.+.+ +.+.| .++|-| ++.+++.+|-++
T Consensus 171 --lLmDEPtSALDPIsT~kIEeLi~e--------Lk~~y------TIviVT---HnmqQAaRvSD~ 217 (253)
T COG1117 171 --LLMDEPTSALDPISTLKIEELITE--------LKKKY------TIVIVT---HNMQQAARVSDY 217 (253)
T ss_pred --EEecCcccccCchhHHHHHHHHHH--------HHhcc------EEEEEe---CCHHHHHHHhHh
Confidence 999999999987654443333221 22222 455554 568888887653
No 32
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=3.1e-15 Score=130.10 Aligned_cols=143 Identities=20% Similarity=0.221 Sum_probs=97.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~ 152 (269)
.++.+.+++....+++++.+.+|++++|+|+||||||||++.+.+++ .|.+|.|+++|.++.. .+++.+|+.
T Consensus 12 r~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gvl 90 (263)
T COG1127 12 RGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKGEILIDGEDIPQLSEEELYEIRKRMGVL 90 (263)
T ss_pred eeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCCeEEEcCcchhccCHHHHHHHHhheeEE
Confidence 45677777888889999999999999999999999999999999988 5779999999998762 122222222
Q ss_pred hhh--------HHHHHH------------HHHHHH-HHHHhCCccee-----eccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 153 AED--------RVENIR------------RIGEVA-KLFADAGVICI-----ACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 153 ~~~--------~~~~~~------------~l~~~a-~~~~~~g~~~i-----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
.|. -.+++. .+.+++ .-+...|+... ...++++-+.| ..||+++.+|++ ++
T Consensus 91 FQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPel--l~ 168 (263)
T COG1127 91 FQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL--LF 168 (263)
T ss_pred eeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCE--EE
Confidence 110 001100 011111 12233344332 33345554555 699999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHH
Q 024315 206 MDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~ 225 (269)
+|||+..+++-....+.+.+
T Consensus 169 ~DEPtsGLDPI~a~~~~~LI 188 (263)
T COG1127 169 LDEPTSGLDPISAGVIDELI 188 (263)
T ss_pred ecCCCCCCCcchHHHHHHHH
Confidence 99999999987765544443
No 33
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1e-14 Score=130.97 Aligned_cols=136 Identities=21% Similarity=0.266 Sum_probs=98.4
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhHH---
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDRV--- 157 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~~--- 157 (269)
.+.+.+++|+.+++|++++|+|.||+|||||.+++.++ ..|.+|.|.++|+++.. .+++.+|+-.|...
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs 96 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-CCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence 37888999999999999999999999999999999985 47889999999988762 22333443333210
Q ss_pred -----HHH------------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 158 -----ENI------------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 158 -----~~~------------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
+++ ..-.++..++.-.|+.. ....++++++|| .++|+++.+|++ +++||+++.+++
T Consensus 97 srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i--LL~DEaTSALDP 174 (339)
T COG1135 97 SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI--LLCDEATSALDP 174 (339)
T ss_pred cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE--EEecCccccCCh
Confidence 000 00112333343334432 455567888888 699999999999 999999999999
Q ss_pred cChhhHHHHHh
Q 024315 216 RDPKGLYKLAR 226 (269)
Q Consensus 216 R~~k~l~~~~r 226 (269)
...+.+.+.++
T Consensus 175 ~TT~sIL~LL~ 185 (339)
T COG1135 175 ETTQSILELLK 185 (339)
T ss_pred HHHHHHHHHHH
Confidence 98877554444
No 34
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.59 E-value=8e-15 Score=133.27 Aligned_cols=144 Identities=17% Similarity=0.249 Sum_probs=103.9
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChh-
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAE- 154 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~- 154 (269)
.+++..+. ...+.+++|+.+++|++++|+||||||||||+++|++++. +.+|.|.++|.+... ..+..+||.++
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy~~~~ 86 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGYVPQE 86 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEEEccC
Confidence 56777787 6889999999999999999999999999999999999985 679999999977653 23333444333
Q ss_pred ----------hHHHHHHHHH---------HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 155 ----------DRVENIRRIG---------EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 155 ----------~~~~~~~~l~---------~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
+..+.+..+. .+..++...++.. .+...|.+.++| ..+.+++.+|++ +++|||+
T Consensus 87 ~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l--liLDEPt 164 (293)
T COG1131 87 PSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL--LILDEPT 164 (293)
T ss_pred CCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE--EEECCCC
Confidence 2222222221 2334455555543 123344555555 799999999999 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..+|...+..+.+.++
T Consensus 165 ~GLDp~~~~~~~~~l~ 180 (293)
T COG1131 165 SGLDPESRREIWELLR 180 (293)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999988887665544
No 35
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.2e-14 Score=125.49 Aligned_cols=144 Identities=22% Similarity=0.255 Sum_probs=98.9
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH--
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-- 156 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-- 156 (269)
++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..++|.+++.
T Consensus 5 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 83 (213)
T cd03259 5 GLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQDYAL 83 (213)
T ss_pred eeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcCcCchhhccEEEEcCchhh
Confidence 4555555556778899999999999999999999999999999987 4668999999987642 1112233333221
Q ss_pred ------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 157 ------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 157 ------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
.+.+.. .......+...++.. .+...++++++| ..+++++.++++ +++|||+..+
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~--lllDEPt~~L 161 (213)
T cd03259 84 FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL--LLLDEPLSAL 161 (213)
T ss_pred ccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccC
Confidence 111100 001222333444422 233456676666 689999999999 9999999999
Q ss_pred HhcChhhHHHHHhc
Q 024315 214 EARDPKGLYKLARE 227 (269)
Q Consensus 214 ~~R~~k~l~~~~r~ 227 (269)
+....+.+++.+++
T Consensus 162 D~~~~~~l~~~l~~ 175 (213)
T cd03259 162 DAKLREELREELKE 175 (213)
T ss_pred CHHHHHHHHHHHHH
Confidence 99988887766653
No 36
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.58 E-value=5.7e-15 Score=130.80 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=91.4
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHH
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA 167 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a 167 (269)
.+.+.+++||.+.+|++++|+|+|||||||+++.|.+++ .+.+|.|+++|.++. .+...++.+ .+.
T Consensus 25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~i~f~g~~i~-------~~~~~~~~~------~v~ 90 (268)
T COG4608 25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGEILFEGKDIT-------KLSKEERRE------RVL 90 (268)
T ss_pred ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCceEEEcCcchh-------hcchhHHHH------HHH
Confidence 478899999999999999999999999999999999987 577999999999976 333333322 233
Q ss_pred HHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315 168 KLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (269)
Q Consensus 168 ~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l 221 (269)
.++...|+.. ..-..++++.|| .++|+++-++++ +.+|+|.+.++.-.+...
T Consensus 91 elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~l--iV~DEpvSaLDvSiqaqI 148 (268)
T COG4608 91 ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKL--IVADEPVSALDVSVQAQI 148 (268)
T ss_pred HHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcE--EEecCchhhcchhHHHHH
Confidence 3333434322 334456777777 699999999999 999999999998666653
No 37
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.3e-15 Score=125.92 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=97.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~ 159 (269)
.+++.+++.-...+.+|+.+++|.+..|+||||+|||||+..+.+++ ...+|.+.++|.++. .+..+++++.
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~-------~~~s~~LAk~ 76 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELT-------STPSKELAKK 76 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecc-------cCChHHHHHH
Confidence 46677777788899999999999999999999999999999999988 466899999999987 3344443333
Q ss_pred HHHHHHHH------------------------------------HHHHhCCcc-eeeccCChHHHHHH-HHHHhCCCCCc
Q 024315 160 IRRIGEVA------------------------------------KLFADAGVI-CIACLISPYRKDRD-ACRSMLPEGDF 201 (269)
Q Consensus 160 ~~~l~~~a------------------------------------~~~~~~g~~-~iv~~~~~~~~~r~-~ar~ll~~~~~ 201 (269)
+.-+.|.- ..+.-..+. ...+.+++++++|+ .+.-++.+.++
T Consensus 77 lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 77 LSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE
Confidence 32222211 111111110 12445677888886 55666667788
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHh
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
|++|+|+..++.+..-...+.+|
T Consensus 157 --vlLDEPLNNLDmkHsv~iMk~Lr 179 (252)
T COG4604 157 --VLLDEPLNNLDMKHSVQIMKILR 179 (252)
T ss_pred --EEecCcccccchHHHHHHHHHHH
Confidence 99999999999888776555444
No 38
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.58 E-value=1.1e-14 Score=125.21 Aligned_cols=144 Identities=21% Similarity=0.277 Sum_probs=98.7
Q ss_pred ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-ccccCCCCChhhH--
Q 024315 81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDLSFKAEDR-- 156 (269)
Q Consensus 81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-~l~~~~g~~~~~~-- 156 (269)
++.+.+.. ....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..++|.+++.
T Consensus 4 ~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~ 82 (205)
T cd03226 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQDVDY 82 (205)
T ss_pred cEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecChhh
Confidence 45555544 55678889999999999999999999999999999987 4678999999987632 1122233333321
Q ss_pred -------HHHHHHH--------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 157 -------VENIRRI--------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 157 -------~~~~~~l--------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
.+++... ......+...++.. .+...++++++| ..+++++.++++ +++|||+..++..
T Consensus 83 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~ 160 (205)
T cd03226 83 QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL--LIFDEPTSGLDYK 160 (205)
T ss_pred hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHH
Confidence 1111100 11223344444432 233456666666 688999999999 9999999999998
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
..+.+.+.+++
T Consensus 161 ~~~~l~~~l~~ 171 (205)
T cd03226 161 NMERVGELIRE 171 (205)
T ss_pred HHHHHHHHHHH
Confidence 88887766553
No 39
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.1e-15 Score=128.27 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=93.0
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRV 157 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~ 157 (269)
++.+.+......+..++++++|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++.. ..+..++|.+++..
T Consensus 5 ~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~ 83 (173)
T cd03230 5 NLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS 83 (173)
T ss_pred EEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccchHhhhccEEEEecCCc
Confidence 4444444445678889999999999999999999999999999987 4668999999987642 11222333333211
Q ss_pred HHHHHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 158 ~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.+....+...+. .++++++| ..+++++.++++ +++|||+..++....+.+++.+++
T Consensus 84 -----------~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 84 -----------LYENLTVRENLK-LSGGMKQRLALAQALLHDPEL--LILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred -----------cccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 011111111111 56666666 699999999999 999999999999988887766553
No 40
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1e-14 Score=127.97 Aligned_cols=145 Identities=20% Similarity=0.209 Sum_probs=99.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~ 152 (269)
.++++.+......+++++++++|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++.. .++..++|.
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v 82 (235)
T cd03261 4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGML 82 (235)
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEE
Confidence 355666655667889999999999999999999999999999999884 668999999977532 112233333
Q ss_pred hhhH--------HHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 153 AEDR--------VENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 153 ~~~~--------~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+++. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l--lll 160 (235)
T cd03261 83 FQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL--LLY 160 (235)
T ss_pred ccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEe
Confidence 3221 111100 011222334444422 223456677776 689999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHhc
Q 024315 207 DVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r~ 227 (269)
|||+..++....+.+.+.+++
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~ 181 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRS 181 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHH
Confidence 999999999888887665543
No 41
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.57 E-value=2e-15 Score=126.65 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=86.8
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHHHHHHHHHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIGE 165 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~~~~~~l~~ 165 (269)
...+..++.+++|++++|+|+||||||||++.|++.++ +.+|.+.++|.++.. .++..++|..++.
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--------- 85 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDD--------- 85 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCC---------
Confidence 35677899999999999999999999999999999884 668999999987642 1111222322221
Q ss_pred HHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 166 VAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 166 ~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.++. ..+.... .++++++| ..+++++.++++ +++|+|+..++....+.+.+.+++
T Consensus 86 --~~~~-~tv~~~l--LS~G~~qrv~la~al~~~p~~--lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 86 --ELFS-GSIAENI--LSGGQRQRLGLARALYGNPRI--LVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred --cccc-CcHHHHC--cCHHHHHHHHHHHHHhcCCCE--EEEECCccccCHHHHHHHHHHHHH
Confidence 0010 0111111 56666666 699999999999 999999999999988887766653
No 42
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.57 E-value=1.2e-14 Score=134.62 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=101.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~ 156 (269)
.++.+.++...+.++++|++++|++++|+||||||||||+++|++.+ .+.+|.+.++|.++.. ..+..++|.+++.
T Consensus 45 ~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~ 123 (340)
T PRK13536 45 AGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SPDAGKITVLGVPVPARARLARARIGVVPQFD 123 (340)
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCceEEEECCEECCcchHHHhccEEEEeCCc
Confidence 57788887788899999999999999999999999999999999988 4678999999987642 1222233332211
Q ss_pred --------HHHHH---HH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 --------VENIR---RI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 --------~~~~~---~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+++. .. .....++...++.. .+...++++++| ..+++++.++++ +++|+|+.
T Consensus 124 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l--LiLDEPt~ 201 (340)
T PRK13536 124 NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL--LILDEPTT 201 (340)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCC
Confidence 11111 10 01112233334322 223345666666 699999999999 99999999
Q ss_pred HHHhcChhhHHHHHhc
Q 024315 212 VCEARDPKGLYKLARE 227 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r~ 227 (269)
.++...++.+.+.+++
T Consensus 202 gLD~~~r~~l~~~l~~ 217 (340)
T PRK13536 202 GLDPHARHLIWERLRS 217 (340)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999988887766543
No 43
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=2.7e-15 Score=125.63 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=87.4
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHHHHHHHHHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIGE 165 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~~~~~~l~~ 165 (269)
...+.+++.+++|++++|+|+||||||||++.|++.++ +.+|.+.++|.++.. ..+..++|..++..
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~-------- 86 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPF-------- 86 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCch--------
Confidence 46788899999999999999999999999999999884 668999999987642 11112233332210
Q ss_pred HHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 166 VAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 166 ~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++. ..+.... .++++++| ..+++++.++++ +++|||+..++......+.+.+++
T Consensus 87 ---~~~-~t~~e~l--LS~G~~~rl~la~al~~~p~l--lllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 87 ---LFS-GTIRENI--LSGGQRQRIAIARALLRDPPI--LILDEATSALDPETEALILEALRA 141 (171)
T ss_pred ---hcc-chHHHHh--hCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHHH
Confidence 110 0111111 55666666 688999999988 999999999999888887766653
No 44
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.57 E-value=2e-14 Score=125.24 Aligned_cols=140 Identities=23% Similarity=0.284 Sum_probs=97.2
Q ss_pred cceEEeeCcee----eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCC
Q 024315 80 TNILWHKNSVD----KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (269)
Q Consensus 80 ~~~~~~~~~v~----~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g 150 (269)
.|+++.+.... +.+.+|+++.+|++++|+|+||||||||+++|+++. .+..|.|.++|...... .++.+.
T Consensus 7 ~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~~~~VQ 85 (252)
T COG1124 7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAFYRPVQ 85 (252)
T ss_pred eceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCceEEECCcccCccccchhhcccee
Confidence 35555554444 788999999999999999999999999999999977 56799999999765431 122222
Q ss_pred CChhhH------HHHHHHH--------------HHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 151 FKAEDR------VENIRRI--------------GEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 151 ~~~~~~------~~~~~~l--------------~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
+..|+. +..++++ .++..++...|+.. ....+++++.+| .++|++..++++ +
T Consensus 86 mVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl--L 163 (252)
T COG1124 86 MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL--L 163 (252)
T ss_pred EEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE--E
Confidence 211111 0001000 11344555555533 233457788888 799999999999 9
Q ss_pred EEeCChhHHHhcChhhHH
Q 024315 205 FMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~ 222 (269)
.+|||+..++...+..+.
T Consensus 164 IlDEptSaLD~siQa~Il 181 (252)
T COG1124 164 ILDEPTSALDVSVQAQIL 181 (252)
T ss_pred EecCchhhhcHHHHHHHH
Confidence 999999999998887733
No 45
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.56 E-value=1.5e-14 Score=125.13 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=97.9
Q ss_pred cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCC
Q 024315 80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLS 150 (269)
Q Consensus 80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g 150 (269)
.++++.+.. ....+.+++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..++
T Consensus 5 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 83 (216)
T TIGR00960 5 EQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIRFNGQDLTRLRGREIPFLRRHIG 83 (216)
T ss_pred EEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEehhhcChhHHHHHHHhce
Confidence 345555532 34678889999999999999999999999999999987 4668999999987632 0122233
Q ss_pred CChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 151 FKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 151 ~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
|.+++. .+++.. ..++...+...++.. .....++++++| ..+++++.++++ ++
T Consensus 84 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--ll 161 (216)
T TIGR00960 84 MVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL--LL 161 (216)
T ss_pred EEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 322221 111110 011223334444422 233456677777 689999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHhc
Q 024315 206 MDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+|||+..++....+.+++.+++
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 162 ADEPTGNLDPELSRDIMRLFEE 183 (216)
T ss_pred EeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999988887766553
No 46
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=1.2e-14 Score=135.13 Aligned_cols=144 Identities=20% Similarity=0.229 Sum_probs=100.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~- 156 (269)
.++++.+......+++++.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++... .++.++|..|+.
T Consensus 10 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~ 88 (351)
T PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA 88 (351)
T ss_pred EeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 45666666677788999999999999999999999999999999988 56789999999877421 112223222211
Q ss_pred -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++.. ...+...+...++.. ....+++++++| ..+|+++.++++ +++|+|+..
T Consensus 89 lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l--LLLDEP~s~ 166 (351)
T PRK11432 89 LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV--LLFDEPLSN 166 (351)
T ss_pred cCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCccc
Confidence 111110 011222333334322 234567777777 699999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++...++.+...++
T Consensus 167 LD~~~r~~l~~~l~ 180 (351)
T PRK11432 167 LDANLRRSMREKIR 180 (351)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888765544
No 47
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.56 E-value=1.2e-14 Score=132.73 Aligned_cols=144 Identities=18% Similarity=0.136 Sum_probs=101.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~ 156 (269)
.++++.++...+.++++|++++|++++|+||||||||||+++|++.+ .+.+|.+.++|.++.. ..+..++|.+++.
T Consensus 11 ~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~ 89 (306)
T PRK13537 11 RNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGSISLCGEPVPSRARHARQRVGVVPQFD 89 (306)
T ss_pred EeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEecccchHHHHhcEEEEeccC
Confidence 56777777788899999999999999999999999999999999988 4678999999988653 1222333333221
Q ss_pred --------HHHHH---HH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 --------VENIR---RI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 --------~~~~~---~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+++. .. .....++...++.. .+...++++++| ..+++++.++++ +++|+|+.
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l--llLDEPt~ 167 (306)
T PRK13537 90 NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV--LVLDEPTT 167 (306)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE--EEEeCCCc
Confidence 11111 10 01112233333321 233446666666 699999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++...++.+.+.++
T Consensus 168 gLD~~~~~~l~~~l~ 182 (306)
T PRK13537 168 GLDPQARHLMWERLR 182 (306)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999998888765554
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.8e-14 Score=125.14 Aligned_cols=143 Identities=18% Similarity=0.218 Sum_probs=97.3
Q ss_pred ceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-
Q 024315 81 NILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED- 155 (269)
Q Consensus 81 ~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~- 155 (269)
++.+.+.. ....+++++.+.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. .+..++|.+++
T Consensus 5 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~-~~~~i~~v~q~~ 82 (220)
T cd03293 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVLVDGEPVTG-PGPDRGYVFQQD 82 (220)
T ss_pred EEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcc-ccCcEEEEeccc
Confidence 45555544 45678899999999999999999999999999999987 4668999999987632 11122222211
Q ss_pred -------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 156 -------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 156 -------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
..+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|||+.
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l--llLDEPt~ 160 (220)
T cd03293 83 ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV--LLLDEPFS 160 (220)
T ss_pred ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEECCCCC
Confidence 1111110 011223344444422 233456666666 689999999999 99999999
Q ss_pred HHHhcChhhHHHHHhc
Q 024315 212 VCEARDPKGLYKLARE 227 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r~ 227 (269)
.++....+.+++.+++
T Consensus 161 ~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 161 ALDALTREQLQEELLD 176 (220)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999998887776653
No 49
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=136.56 Aligned_cols=144 Identities=18% Similarity=0.228 Sum_probs=108.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
.+++..++.+.+.++++|.+.+|++.+|+|.||+|||||.+.|.|.+ .|.+|.|+++|..++- .++..+|+..|
T Consensus 8 ~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ 86 (501)
T COG3845 8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ 86 (501)
T ss_pred eccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence 46778888999999999999999999999999999999999999998 5779999999998762 22333343333
Q ss_pred hHH-----------------------HHHHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 155 DRV-----------------------ENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 155 ~~~-----------------------~~~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
... .......++..+...+|+.. .+..++.+.+|| ++++.++..+++ +.+
T Consensus 87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~i--LIL 164 (501)
T COG3845 87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARL--LIL 164 (501)
T ss_pred ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCE--EEE
Confidence 110 00111123444555666633 355556666666 899999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+.++-+...+.++..++
T Consensus 165 DEPTaVLTP~E~~~lf~~l~ 184 (501)
T COG3845 165 DEPTAVLTPQEADELFEILR 184 (501)
T ss_pred cCCcccCCHHHHHHHHHHHH
Confidence 99999999999988776554
No 50
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.56 E-value=2e-14 Score=124.72 Aligned_cols=144 Identities=16% Similarity=0.195 Sum_probs=95.9
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhh
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~ 155 (269)
++.+.+......+.+++.+.+|++++|+|+||||||||+++|++.++ +.+|.+.++|.++... .+..++|.+++
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 83 (222)
T cd03224 5 NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEG 83 (222)
T ss_pred eEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccc
Confidence 45555555567788999999999999999999999999999999884 6689999999776421 12223333322
Q ss_pred H--------HHHHHH----------HHHHHHHHHhC-Cc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 156 R--------VENIRR----------IGEVAKLFADA-GV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 156 ~--------~~~~~~----------l~~~a~~~~~~-g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
. .+++.. .......+... ++ ...+...++++++| ..+++++.++++ +++|+|+.
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~ 161 (222)
T cd03224 84 RRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL--LLLDEPSE 161 (222)
T ss_pred cccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE--EEECCCcc
Confidence 1 111100 00011111111 11 11233356666666 689999999999 99999999
Q ss_pred HHHhcChhhHHHHHhc
Q 024315 212 VCEARDPKGLYKLARE 227 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r~ 227 (269)
.++....+.+.+.+++
T Consensus 162 ~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 162 GLAPKIVEEIFEAIRE 177 (222)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999988887766653
No 51
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.56 E-value=1.7e-14 Score=125.03 Aligned_cols=144 Identities=23% Similarity=0.246 Sum_probs=97.3
Q ss_pred ceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--------cccC
Q 024315 81 NILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRD 148 (269)
Q Consensus 81 ~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--------l~~~ 148 (269)
++.+.+.. ....+.+++++++|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++... .+..
T Consensus 5 ~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (218)
T cd03255 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAFRRRH 83 (218)
T ss_pred eeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHHHhhc
Confidence 45555543 456788899999999999999999999999999999884 6689999999876420 1122
Q ss_pred CCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 149 LSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 149 ~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
++|.+++. .+.+.. ...+...+...++.. .+...++++++| ..+++++.++++
T Consensus 84 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-- 161 (218)
T cd03255 84 IGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI-- 161 (218)
T ss_pred EEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE--
Confidence 23222210 111110 011223344444432 233456666666 689999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++....+.+++.+++
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~ 185 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRE 185 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999888887766553
No 52
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.3e-14 Score=125.14 Aligned_cols=143 Identities=13% Similarity=0.182 Sum_probs=95.8
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-----
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED----- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~----- 155 (269)
++.+.+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++....+..++|.+++
T Consensus 5 ~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~ 83 (210)
T cd03269 5 NVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLDIAARNRIGYLPEERGLYP 83 (210)
T ss_pred EEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchhHHHHccEEEeccCCcCCc
Confidence 4455554555678889999999999999999999999999999987 4668999999976532111111221111
Q ss_pred ---HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 156 ---RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 156 ---~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
..+++.. ..+....+...++.. .+...++++++| ..+++++.++++ +++|||+..++.
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~--lllDEP~~~LD~ 161 (210)
T cd03269 84 KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL--LILDEPFSGLDP 161 (210)
T ss_pred CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCH
Confidence 0111110 011222333344422 233456677776 689999999999 999999999999
Q ss_pred cChhhHHHHHh
Q 024315 216 RDPKGLYKLAR 226 (269)
Q Consensus 216 R~~k~l~~~~r 226 (269)
...+.+++.++
T Consensus 162 ~~~~~~~~~l~ 172 (210)
T cd03269 162 VNVELLKDVIR 172 (210)
T ss_pred HHHHHHHHHHH
Confidence 88877776655
No 53
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.56 E-value=2.4e-14 Score=123.39 Aligned_cols=143 Identities=22% Similarity=0.256 Sum_probs=97.2
Q ss_pred ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
++.+.+.. ....+.+++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. ..+..++|.++
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82 (211)
T ss_pred eEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccCCHHHHHhhceEEec
Confidence 44555444 55678899999999999999999999999999999988 4668999999987642 11222333332
Q ss_pred hH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 155 DR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 155 ~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
+. .+++.. .......+...++.. .+...++++++| ..+++++.++++ +++||
T Consensus 83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDE 160 (211)
T cd03225 83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI--LLLDE 160 (211)
T ss_pred ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 21 111110 001122333344422 233456677666 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++....+.+.+.++
T Consensus 161 Pt~~LD~~~~~~~~~~l~ 178 (211)
T cd03225 161 PTAGLDPAGRRELLELLK 178 (211)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999988888776655
No 54
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.56 E-value=3.2e-14 Score=122.08 Aligned_cols=144 Identities=21% Similarity=0.177 Sum_probs=97.8
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~ 152 (269)
++.+.+......+.+++.+++|++++|+|+||||||||++.|+|.+ .+..|.+.++|.++.. ..+..++|.
T Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 81 (206)
T TIGR03608 3 NISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLGYL 81 (206)
T ss_pred ceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCeeEE
Confidence 4555555556788899999999999999999999999999999988 4668999999987431 011223332
Q ss_pred hhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 153 AEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 153 ~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
.++. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 82 ~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l--lllD 159 (206)
T TIGR03608 82 FQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL--ILAD 159 (206)
T ss_pred ecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence 2211 111110 011223334444422 233456666666 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHhc
Q 024315 208 VPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r~ 227 (269)
+|+..++....+.+.+.+++
T Consensus 160 EPt~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLE 179 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHH
Confidence 99999999888887766653
No 55
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.56 E-value=5.7e-15 Score=147.82 Aligned_cols=143 Identities=22% Similarity=0.202 Sum_probs=101.4
Q ss_pred ceEEeeCce--eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~v--~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
|++|++..- ...++.++++++|+.++|+|+||||||||+|.|.|++ .|..|.|++||.++.. .+++.+++.+|
T Consensus 476 nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q 554 (709)
T COG2274 476 NVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554 (709)
T ss_pred EEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHHhcCHHHHHhheeEEcc
Confidence 444444322 2346668999999999999999999999999999988 5779999999999863 56666676666
Q ss_pred hHH-------HHHHH------HHHHHHHHHhCCc-----------c----eeeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 155 DRV-------ENIRR------IGEVAKLFADAGV-----------I----CIACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 155 ~~~-------~~~~~------l~~~a~~~~~~g~-----------~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
+-. +++.. ..++......+|. . +-....|++++|| ..||+++.+|++ +.
T Consensus 555 ~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I--Ll 632 (709)
T COG2274 555 DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI--LL 632 (709)
T ss_pred cchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE--EE
Confidence 431 11110 0111112222222 1 1234457788887 799999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|||++.+|....+..++.+.
T Consensus 633 LDEaTSaLD~~sE~~I~~~L~ 653 (709)
T COG2274 633 LDEATSALDPETEAIILQNLL 653 (709)
T ss_pred EeCcccccCHhHHHHHHHHHH
Confidence 999999999999888775544
No 56
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.56 E-value=2.8e-14 Score=123.26 Aligned_cols=144 Identities=21% Similarity=0.257 Sum_probs=97.9
Q ss_pred ceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315 81 NILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~ 152 (269)
++.+.+ ......+..++.+++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++.. .++..++|.
T Consensus 6 ~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 84 (214)
T TIGR02673 6 NVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVV 84 (214)
T ss_pred eeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEE
Confidence 445554 23456788899999999999999999999999999999874 668999999987642 112223333
Q ss_pred hhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 153 AEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 153 ~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
+++. .+++.. .......+...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--llLD 162 (214)
T TIGR02673 85 FQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL--LLAD 162 (214)
T ss_pred ecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE--EEEe
Confidence 3221 111110 011222333444422 223456666666 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHhc
Q 024315 208 VPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r~ 227 (269)
||+..++......+++.+++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 163 EPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999988887766654
No 57
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.56 E-value=1.5e-14 Score=134.64 Aligned_cols=144 Identities=22% Similarity=0.236 Sum_probs=101.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~- 156 (269)
.++++.+..+...+.+++.+.+|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. ..++.++|..|+.
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~ 86 (353)
T TIGR03265 8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA 86 (353)
T ss_pred EEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 46677776777788999999999999999999999999999999987 5678999999988742 1112233332221
Q ss_pred -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++.. ...+...+...++.. ....+++++++| ..+|+++.++++ +++|||+..
T Consensus 87 lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l--lLLDEP~s~ 164 (353)
T TIGR03265 87 LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL--LLLDEPLSA 164 (353)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence 111110 112223334444432 234457777777 699999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++...++.+.+.++
T Consensus 165 LD~~~r~~l~~~L~ 178 (353)
T TIGR03265 165 LDARVREHLRTEIR 178 (353)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988887665544
No 58
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=8.6e-15 Score=125.91 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=91.8
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecCc---ccccCCCCChhhHHHHH-HH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRH---GLNRDLSFKAEDRVENI-RR 162 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~~~~-~~ 162 (269)
....+..++.+++|++++|+|+||||||||++.|++.+++ +.+|.+.++|.++.. ..+..++|.+++..-.. ..
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 99 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLT 99 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCc
Confidence 3455677999999999999999999999999999998853 668999999987642 22333444443321000 00
Q ss_pred HHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 163 IGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 163 l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+.+.................++++++| ..+++++.++++ +++|||+..++...++.+++.+++
T Consensus 100 v~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~l--lllDEPt~~LD~~~~~~~~~~l~~ 163 (202)
T cd03233 100 VRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASV--LCWDNSTRGLDSSTALEILKCIRT 163 (202)
T ss_pred HHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 011100000000122233445666666 699999999998 999999999999988887766553
No 59
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=1.6e-14 Score=134.58 Aligned_cols=144 Identities=18% Similarity=0.108 Sum_probs=100.0
Q ss_pred cceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH
Q 024315 80 TNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR 156 (269)
Q Consensus 80 ~~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~ 156 (269)
.++.+.+ ......+++++++.+|++++|+||||||||||+++|+|++ .+.+|.|.++|.++... ..+.++|..|+.
T Consensus 7 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 85 (356)
T PRK11650 7 QAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEIWIGGRVVNELEPADRDIAMVFQNY 85 (356)
T ss_pred EeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence 3555555 4566788899999999999999999999999999999987 46789999999877421 112233322211
Q ss_pred --------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 --------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 --------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+++.. ...+...+...++.. .+..+++++++| ..+|+++.++++ +++|||+.
T Consensus 86 ~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l--lLLDEP~s 163 (356)
T PRK11650 86 ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV--FLFDEPLS 163 (356)
T ss_pred cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence 111110 011223333444432 234567777777 699999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++...++.+.+.++
T Consensus 164 ~LD~~~r~~l~~~l~ 178 (356)
T PRK11650 164 NLDAKLRVQMRLEIQ 178 (356)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999988887665544
No 60
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.55 E-value=1.1e-14 Score=142.00 Aligned_cols=143 Identities=25% Similarity=0.246 Sum_probs=97.4
Q ss_pred eEEeeCceee------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCC
Q 024315 82 ILWHKNSVDK------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFK 152 (269)
Q Consensus 82 ~~~~~~~v~~------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~ 152 (269)
+++++..++| .++.++++++|+.++|+|+||||||||++.|.|.+ ++.+|.|.++|.++.. .+++.++|.
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 4444444443 45678999999999999999999999999999988 5779999999987652 222333443
Q ss_pred hhhH-------HHHHH------------HHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccE
Q 024315 153 AEDR-------VENIR------------RIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 153 ~~~~-------~~~~~------------~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
+|+- ++++. ...+.+ .... ..|+... ....+++++|| ..+|+++.++++
T Consensus 414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i-- 491 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI-- 491 (529)
T ss_pred ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE--
Confidence 3321 11111 111111 1111 1122221 23457788888 799999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+.+|||++.+|....+.+++..++
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999998888776653
No 61
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.55 E-value=5.9e-14 Score=117.69 Aligned_cols=137 Identities=19% Similarity=0.260 Sum_probs=92.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---------------
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------------- 144 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--------------- 144 (269)
.++.|.+...+ -+.+++++.|++++|+||||||||||++.++|+. .|.+|.++++|.+....
T Consensus 5 ~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN 81 (231)
T COG3840 5 DDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEILINGVDHTASPPAERPVSMLFQENN 81 (231)
T ss_pred cceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEEEcCeecCcCCcccCChhhhhhccc
Confidence 35666654332 2457889999999999999999999999999988 57899999999887520
Q ss_pred c--------ccCCCCChhhH--HHHHHHHHHHHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 145 L--------NRDLSFKAEDR--VENIRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 145 l--------~~~~g~~~~~~--~~~~~~l~~~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
+ +-.+|.++.-+ .+...++ .......|+. -+....++++++| ..+|.++.+.++ +++|||
T Consensus 82 LFaHLtV~qNigLGl~P~LkL~a~~r~~v---~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi--lLLDEP 156 (231)
T COG3840 82 LFAHLTVAQNIGLGLSPGLKLNAEQREKV---EAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPI--LLLDEP 156 (231)
T ss_pred cchhhhhhhhhcccCCcccccCHHHHHHH---HHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCe--EEecCc
Confidence 1 11122222111 1111111 2222233332 2345567788888 688999998888 899999
Q ss_pred hhHHHhcChhhHHHH
Q 024315 210 LQVCEARDPKGLYKL 224 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~ 224 (269)
++.+++..+......
T Consensus 157 FsALdP~LR~eMl~L 171 (231)
T COG3840 157 FSALDPALRAEMLAL 171 (231)
T ss_pred hhhcCHHHHHHHHHH
Confidence 999999988775433
No 62
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.55 E-value=2e-14 Score=124.70 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=96.7
Q ss_pred ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhh
Q 024315 81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~ 155 (269)
++.+.+.. ....+.+++++++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++.. ..+..++|..++
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 83 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGYCPQF 83 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEEecCc
Confidence 45555544 557788999999999999999999999999999999874 668999999987632 111222222221
Q ss_pred --------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 156 --------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 156 --------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
..+++.. .......+...++.. .+...++++++| ..+++++.++++ +++|||+
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP~ 161 (220)
T cd03263 84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV--LLLDEPT 161 (220)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEECCCC
Confidence 0111110 011222333344422 133456666666 689999999999 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..++....+.+.+.++
T Consensus 162 ~~LD~~~~~~l~~~l~ 177 (220)
T cd03263 162 SGLDPASRRAIWDLIL 177 (220)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999998888776655
No 63
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=2.7e-14 Score=124.05 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=97.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~ 156 (269)
.++++.+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. ..+..++|.+++.
T Consensus 4 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (220)
T cd03265 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVVREPREVRRRIGIVFQDL 82 (220)
T ss_pred EEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecCcChHHHhhcEEEecCCc
Confidence 35566665666788899999999999999999999999999999987 4668999999976531 1111222222211
Q ss_pred --------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 --------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 --------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+.+.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|||+.
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l--lllDEPt~ 160 (220)
T cd03265 83 SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV--LFLDEPTI 160 (220)
T ss_pred cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence 011100 011222333444422 233456666776 689999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++....+.+++.++
T Consensus 161 ~LD~~~~~~l~~~l~ 175 (220)
T cd03265 161 GLDPQTRAHVWEYIE 175 (220)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999998888776554
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=2.5e-14 Score=125.61 Aligned_cols=144 Identities=18% Similarity=0.254 Sum_probs=97.2
Q ss_pred ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315 81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~ 152 (269)
++.+.+.. ....+.+++++.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. .++..++|.
T Consensus 5 ~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 83 (241)
T cd03256 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDINKLKGKALRQLRRQIGMI 83 (241)
T ss_pred eEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEeccccCHhHHHHHHhccEEE
Confidence 45555544 55678889999999999999999999999999999987 4668999999977542 112223322
Q ss_pred hhhH--------HHHHH--------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCC
Q 024315 153 AEDR--------VENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 153 ~~~~--------~~~~~--------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+++. .+++. ....+...+...++.. .+...++++++| ..+++++.++
T Consensus 84 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 163 (241)
T cd03256 84 FQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQP 163 (241)
T ss_pred cccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCC
Confidence 2211 11110 0011122333444422 223456666666 6899999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|||+..++....+.+++.+++
T Consensus 164 ~l--lllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 164 KL--ILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred CE--EEEeCccccCCHHHHHHHHHHHHH
Confidence 99 999999999999988887766553
No 65
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.55 E-value=4e-14 Score=122.20 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=98.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~- 156 (269)
.++.+.+......+.+++++++|++++|+|+||||||||++.|++.++ +.+|.+.++|.++... .+..++|.+++.
T Consensus 4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (213)
T cd03301 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA 82 (213)
T ss_pred EeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChh
Confidence 345555555556788999999999999999999999999999999884 6689999999876421 111222222211
Q ss_pred -------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++.. . ......+...++.. .+...++++++| ..+++++.++++ +++|||+..
T Consensus 83 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l--lllDEPt~~ 160 (213)
T cd03301 83 LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV--FLMDEPLSN 160 (213)
T ss_pred hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence 111100 0 11122334444422 223456666666 699999999998 999999999
Q ss_pred HHhcChhhHHHHHhc
Q 024315 213 CEARDPKGLYKLARE 227 (269)
Q Consensus 213 l~~R~~k~l~~~~r~ 227 (269)
++....+.+++.+++
T Consensus 161 LD~~~~~~l~~~l~~ 175 (213)
T cd03301 161 LDAKLRVQMRAELKR 175 (213)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999988887766553
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.55 E-value=1.8e-14 Score=136.06 Aligned_cols=144 Identities=18% Similarity=0.255 Sum_probs=100.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++++.+......+..+|.+++|++++|+||||||||||++.|+|.++ +.+|.|.++|.++.. .+++.+++..++
T Consensus 7 ~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~ 85 (402)
T PRK09536 7 SDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVASVPQD 85 (402)
T ss_pred eeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEEEccC
Confidence 467777777778899999999999999999999999999999999884 678999999987643 122233333221
Q ss_pred HH--------HHHH----------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 156 RV--------ENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 156 ~~--------~~~~----------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.. +.+. ....+...+...++.. .+..+|+++++| .++++++.++++ +++
T Consensus 86 ~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i--LLL 163 (402)
T PRK09536 86 TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV--LLL 163 (402)
T ss_pred CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 10 0100 0011222333334422 233456777777 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++...+..+.+.++
T Consensus 164 DEPtsgLD~~~~~~l~~lL~ 183 (402)
T PRK09536 164 DEPTASLDINHQVRTLELVR 183 (402)
T ss_pred ECCcccCCHHHHHHHHHHHH
Confidence 99999999988777665444
No 67
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.55 E-value=2.5e-14 Score=134.19 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=100.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~- 156 (269)
.++.+.+......+.+++.+.+|++++|+||||||||||+++|+|++ .+.+|.|.++|.++... .++.++|..|+.
T Consensus 18 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~ 96 (375)
T PRK09452 18 RGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDITHVPAENRHVNTVFQSYA 96 (375)
T ss_pred EEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCcc
Confidence 45666666666788899999999999999999999999999999987 56789999999987420 112223222211
Q ss_pred -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++.. ...+...+...++.. .+..+++++++| ..+|+++.++++ +++|+|+..
T Consensus 97 lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l--lLLDEP~s~ 174 (375)
T PRK09452 97 LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV--LLLDESLSA 174 (375)
T ss_pred cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCc
Confidence 111110 011222333334432 234457777777 699999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++...++.+++.++
T Consensus 175 LD~~~r~~l~~~L~ 188 (375)
T PRK09452 175 LDYKLRKQMQNELK 188 (375)
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888765554
No 68
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.55 E-value=2.8e-15 Score=126.31 Aligned_cols=123 Identities=25% Similarity=0.248 Sum_probs=88.0
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhHHHHHHHHHHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENIRRIGEV 166 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~~~~~~l~~~ 166 (269)
...++.++++.+|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++.. .++..++|.+++..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--------- 85 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISVLNQRPY--------- 85 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe---------
Confidence 3567789999999999999999999999999999987 4678999999986531 11122233332210
Q ss_pred HHHHHhCCcce-eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 167 AKLFADAGVIC-IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 167 a~~~~~~g~~~-iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++. ..+.. +....++++++| ..+++++.++++ +++|+|+..++....+.+++.+++
T Consensus 86 --~~~-~tv~~~i~~~LS~G~~qrv~laral~~~p~~--lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 86 --LFD-TTLRNNLGRRFSGGERQRLALARILLQDAPI--VLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred --eec-ccHHHhhcccCCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence 000 00100 133456666666 699999999999 999999999999888887776654
No 69
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.4e-14 Score=123.62 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=89.9
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCcccccCCCCChhhHHHHH-HHHHHH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-RRIGEV 166 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~-~~l~~~ 166 (269)
....+.+++.+++|++++|+|+||||||||++.|++.+. .+.+|.+.++|.++...++..++|..++..-.. ..+.+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 446788899999999999999999999999999999753 356899999998764222333444443221000 000111
Q ss_pred HHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 167 AKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 167 a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
....... ...++++++| ..+++++.++++ +++|+|+..++....+.+.+.+++
T Consensus 100 l~~~~~~------~~LSgGe~qrv~la~al~~~p~v--lllDEP~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 100 LRFSALL------RGLSVEQRKRLTIGVELAAKPSI--LFLDEPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred HHHHHHH------hcCCHHHhHHHHHHHHHhcCCcE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 0000000 0455666666 689999999999 999999999999888887766553
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.54 E-value=2.9e-14 Score=124.30 Aligned_cols=145 Identities=20% Similarity=0.192 Sum_probs=98.9
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc----cCCccEEEECCeecCc------ccccCCC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRH------GLNRDLS 150 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~----~~~~g~i~l~g~~~~~------~l~~~~g 150 (269)
++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+. .+.+|.|.++|.++.. ..+..++
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 84 (227)
T cd03260 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG 84 (227)
T ss_pred EEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEE
Confidence 45555555556788899999999999999999999999999999872 3568999999987532 1122233
Q ss_pred CChhhH-------HHHHHH-------------HHHHHHHHHhCCcce----e--eccCChHHHHH-HHHHHhCCCCCccE
Q 024315 151 FKAEDR-------VENIRR-------------IGEVAKLFADAGVIC----I--ACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 151 ~~~~~~-------~~~~~~-------------l~~~a~~~~~~g~~~----i--v~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
|.+++. .+++.. ...+...+...++.. . +...++++++| ..+++++.++++
T Consensus 85 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-- 162 (227)
T cd03260 85 MVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEV-- 162 (227)
T ss_pred EEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence 322221 111100 011223344444422 1 24556777776 689999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++....+.+.+.+++
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~ 186 (227)
T cd03260 163 LLLDEPTSALDPISTAKIEELIAE 186 (227)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999988887766654
No 71
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.54 E-value=2e-14 Score=124.13 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=95.2
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-----
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED----- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~----- 155 (269)
++++.+......+.+++.+++|++++|+|+||||||||++.|+|.+ .+.+|.+.++|.++.. .+..++|.+++
T Consensus 4 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~ 81 (213)
T cd03235 4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPLEK-ERKRIGYVPQRRSIDR 81 (213)
T ss_pred cceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccHHH-HHhheEEecccccccc
Confidence 4555555556778899999999999999999999999999999987 4668999999875421 11111111110
Q ss_pred -----HHHHHH---------------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 156 -----RVENIR---------------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 156 -----~~~~~~---------------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
..+++. . .......+...++.. .+...++++++| ..+++++.++++ +++|||
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--lllDEP 159 (213)
T cd03235 82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL--LLLDEP 159 (213)
T ss_pred CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeCC
Confidence 000000 0 011222333334321 233456666666 689999999999 999999
Q ss_pred hhHHHhcChhhHHHHHhc
Q 024315 210 LQVCEARDPKGLYKLARE 227 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r~ 227 (269)
+..++....+.+.+.+++
T Consensus 160 t~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 160 FAGVDPKTQEDIYELLRE 177 (213)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999999988887766553
No 72
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.54 E-value=4.8e-14 Score=121.59 Aligned_cols=144 Identities=21% Similarity=0.221 Sum_probs=97.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~ 153 (269)
.++.+.+......+.+++.+++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++.. ..+..++|.+
T Consensus 4 ~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 82 (213)
T cd03262 4 KNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLTDDKKNINELRQKVGMVF 82 (213)
T ss_pred EEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccchhHHHHHhcceEEe
Confidence 35566665556778899999999999999999999999999999988 4668999999987631 1122233322
Q ss_pred hhH--------HHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 154 EDR--------VENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 154 ~~~--------~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
++. .+++.. .......+...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 83 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllD 160 (213)
T cd03262 83 QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV--MLFD 160 (213)
T ss_pred cccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE--EEEe
Confidence 211 111100 011122333334321 233456666666 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
+|+..++....+.+.+.++
T Consensus 161 EP~~~LD~~~~~~l~~~l~ 179 (213)
T cd03262 161 EPTSALDPELVGEVLDVMK 179 (213)
T ss_pred CCccCCCHHHHHHHHHHHH
Confidence 9999999888877766655
No 73
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=1.7e-14 Score=148.49 Aligned_cols=167 Identities=18% Similarity=0.195 Sum_probs=115.7
Q ss_pred ceeeccccccccccchhhhcccccccccccccccccccceEEeeCceeeccCc--------ceecCCCeEEEEEcCCCCh
Q 024315 43 SLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGLSGSG 114 (269)
Q Consensus 43 ~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v~~~~r~--------sl~~~~g~~i~l~G~sGsG 114 (269)
=|.+|||.|.+++.. .+.++ . ..-..++++.++.|+|+.|+ ++++++|++++|+||||||
T Consensus 961 iF~i~dr~~~i~~~~--------~~~~~-~---~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 961 IFEILDRKPTIDPDS--------TSGGK-L---PNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred HHHHhcCCCCCCCCC--------CCCCc-c---ccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCC
Confidence 488999998764322 01111 1 11125678888888888776 6999999999999999999
Q ss_pred HHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH-------HHHHHH------HHHHHHHH------
Q 024315 115 KSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV-------ENIRRI------GEVAKLFA------ 171 (269)
Q Consensus 115 KSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~-------~~~~~l------~~~a~~~~------ 171 (269)
|||+...|++.| +|..|.|.+||.+++. .||++++++.||.. +++..- .++.....
T Consensus 1029 KSTvI~LLeRfY-dp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1029 KSTVISLLERFY-DPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred HHHHHHHHHHhc-CCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHH
Confidence 999999999988 5779999999999974 56777777776542 222110 11111111
Q ss_pred -----hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 172 -----DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 172 -----~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
..|.... ...++++++|| +++|+++.+|++ +++||-+..||....+-..++
T Consensus 1108 FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI--LLLDEATSALDseSErvVQeA 1168 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI--LLLDEATSALDSESERVVQEA 1168 (1228)
T ss_pred HHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe--eeeeccchhhhhhhHHHHHHH
Confidence 1122221 23457788888 799999999999 999999999997766554433
No 74
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.54 E-value=2.8e-14 Score=132.38 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=97.1
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCCCCChhhH-----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR----- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~g~~~~~~----- 156 (269)
+...++++|++++|++++|+|+||||||||+++|++++ .+.+|.|.++|.++... .++.++|.+|+.
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 46788999999999999999999999999999999987 56789999999887421 233444443321
Q ss_pred ---HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 157 ---VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 157 ---~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
.+++.. ...+..++...++.. ....+|+++++| .++|+++.++++ +++|||+..++..
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i--LLlDEPts~LD~~ 174 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV--LLCDEATSALDPA 174 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHH
Confidence 111110 011223344445432 234457777777 699999999999 9999999999999
Q ss_pred ChhhHHHHHh
Q 024315 217 DPKGLYKLAR 226 (269)
Q Consensus 217 ~~k~l~~~~r 226 (269)
..+.+.+.++
T Consensus 175 t~~~i~~lL~ 184 (343)
T TIGR02314 175 TTQSILELLK 184 (343)
T ss_pred HHHHHHHHHH
Confidence 9888665544
No 75
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.54 E-value=3.2e-14 Score=129.73 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=99.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChhhH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAEDR 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~~~ 156 (269)
.++.+.+......+.++|++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++... .+..++|.+++.
T Consensus 8 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 86 (303)
T TIGR01288 8 VGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGKITVLGEPVPSRARLARVAIGVVPQFD 86 (303)
T ss_pred EeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcccHHHHhhcEEEEeccc
Confidence 46667666667889999999999999999999999999999999988 46689999999876321 122223322211
Q ss_pred --------HHHHH---HH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 --------VENIR---RI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 --------~~~~~---~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+++. .. .....++...++.. .+...++++++| ..+++++.++++ +++|+|+.
T Consensus 87 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~ 164 (303)
T TIGR01288 87 NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL--LILDEPTT 164 (303)
T ss_pred cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence 11111 00 01112233334322 233456666776 699999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++...++.+++.++
T Consensus 165 gLD~~~~~~l~~~l~ 179 (303)
T TIGR01288 165 GLDPHARHLIWERLR 179 (303)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999998887766554
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.54 E-value=3.6e-14 Score=122.13 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=97.8
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH--
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-- 156 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-- 156 (269)
++.+.+......+..++++++|++++|+|+||||||||++.|+|.++ +.+|.+.++|.++.. ..+..++|.+++.
T Consensus 5 ~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (208)
T cd03268 5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGF 83 (208)
T ss_pred EEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCcc
Confidence 45555555667888999999999999999999999999999999884 668999999987632 1111222222211
Q ss_pred ------HHHHHH--------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 157 ------VENIRR--------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 157 ------~~~~~~--------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
.+++.. -..+...+...++.. .+...++++++| ..+++++.++++ +++|+|+..++...
T Consensus 84 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~LD~~~ 161 (208)
T cd03268 84 YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL--LILDEPTNGLDPDG 161 (208)
T ss_pred CccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCcccCCHHH
Confidence 111110 011222333334422 123356666666 689999999998 99999999999988
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+++.+++
T Consensus 162 ~~~l~~~l~~ 171 (208)
T cd03268 162 IKELRELILS 171 (208)
T ss_pred HHHHHHHHHH
Confidence 8887766553
No 77
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.54 E-value=5.2e-14 Score=123.33 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=98.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++.+.+......+.+++++++|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++... .+..++|.++
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 82 (236)
T cd03219 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGRTFQ 82 (236)
T ss_pred eeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEEEec
Confidence 355666655567788999999999999999999999999999999884 6689999999876421 1112222222
Q ss_pred hH--------HHHHHH----------------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCC
Q 024315 155 DR--------VENIRR----------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 155 ~~--------~~~~~~----------------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+. .+.+.. ...+...+...++.. .+...++++++| ..+++++.++
T Consensus 83 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 162 (236)
T cd03219 83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDP 162 (236)
T ss_pred ccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 10 111100 001222333444422 223356666666 6899999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|||+..++....+.+++.+++
T Consensus 163 ~l--lllDEPt~~LD~~~~~~l~~~l~~ 188 (236)
T cd03219 163 KL--LLLDEPAAGLNPEETEELAELIRE 188 (236)
T ss_pred CE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 99 999999999999988887766553
No 78
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=2.7e-14 Score=120.74 Aligned_cols=110 Identities=19% Similarity=0.140 Sum_probs=85.3
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~ 160 (269)
++...++....... ++.+++|++++|+|+||||||||++.|++.+ .+.+|.|.++|..+ ++.++...
T Consensus 5 ~l~~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i--------~~~~q~~~--- 71 (177)
T cd03222 5 DCVKRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGITP--------VYKPQYID--- 71 (177)
T ss_pred CeEEEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEEE--------EEEcccCC---
Confidence 45555655655555 4899999999999999999999999999988 46689999998654 23332210
Q ss_pred HHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 161 RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.+.++++| ..+++++.++++ +++|||+..++....+.+.+.++
T Consensus 72 ---------------------LSgGq~qrv~laral~~~p~l--llLDEPts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 72 ---------------------LSGGELQRVAIAAALLRNATF--YLFDEPSAYLDIEQRLNAARAIR 115 (177)
T ss_pred ---------------------CCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHH
Confidence 45566665 689999999998 99999999999988887665554
No 79
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.54 E-value=2.9e-14 Score=132.73 Aligned_cols=144 Identities=21% Similarity=0.242 Sum_probs=100.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~- 156 (269)
.++.+.+......+++++.+.+|++++|+||||||||||+++|+|.+ .+.+|.|+++|.++.. ..++.++|..|+.
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~ 84 (353)
T PRK10851 6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA 84 (353)
T ss_pred EEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHCCEEEEecCcc
Confidence 35566666667788999999999999999999999999999999987 5678999999988742 1112223222211
Q ss_pred -------HHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 157 -------VENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 157 -------~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
.+++.. ...+...+...++.. .+..+++++++| ..+++++.++++ +++|+
T Consensus 85 l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l--lLLDE 162 (353)
T PRK10851 85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI--LLLDE 162 (353)
T ss_pred cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence 111110 012223344444422 233456777777 699999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++...++.+.+.++
T Consensus 163 P~s~LD~~~r~~l~~~L~ 180 (353)
T PRK10851 163 PFGALDAQVRKELRRWLR 180 (353)
T ss_pred CCccCCHHHHHHHHHHHH
Confidence 999999998887665544
No 80
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.54 E-value=2e-14 Score=117.36 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=86.8
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~ 160 (269)
++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+ ++.+|.+.+++.. .++|.++
T Consensus 5 ~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~~-------~i~~~~~------ 70 (144)
T cd03221 5 NLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGSTV-------KIGYFEQ------ 70 (144)
T ss_pred EEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCeE-------EEEEEcc------
Confidence 4444444445677889999999999999999999999999999987 4678999998842 1233333
Q ss_pred HHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 161 RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.+.++++| ..+++++.++++ +++|+|+..++....+.+.+.+++
T Consensus 71 ---------------------lS~G~~~rv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 71 ---------------------LSGGEKMRLALAKLLLENPNL--LLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred ---------------------CCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 44555555 689999999999 999999999999998888777764
No 81
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.54 E-value=4.2e-14 Score=124.46 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=95.7
Q ss_pred ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315 81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~ 152 (269)
++.+.+. .....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.
T Consensus 6 ~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v 84 (243)
T TIGR02315 6 NLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRRIGMI 84 (243)
T ss_pred eeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhhhCCHHHHHHHHhheEEE
Confidence 4555544 445678889999999999999999999999999999987 4668999999977532 012222222
Q ss_pred hhhH--------HHHHH--------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCC
Q 024315 153 AEDR--------VENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 153 ~~~~--------~~~~~--------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+++. .+++. ....+...+...++.. .+...++++++| ..+++++.++
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 164 (243)
T TIGR02315 85 FQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQP 164 (243)
T ss_pred cCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 2210 01110 0011222333334422 233456666666 6999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++ +++|||+..++....+.+++.++
T Consensus 165 ~l--lllDEPt~~LD~~~~~~l~~~l~ 189 (243)
T TIGR02315 165 DL--ILADEPIASLDPKTSKQVMDYLK 189 (243)
T ss_pred CE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 99 99999999999988877766554
No 82
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.54 E-value=2.4e-14 Score=124.02 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=96.9
Q ss_pred ceEEeeCce----eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCCh
Q 024315 81 NILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKA 153 (269)
Q Consensus 81 ~~~~~~~~v----~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~ 153 (269)
++.+.+... ...++.++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++.. .++..++|.+
T Consensus 6 ~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 84 (218)
T cd03266 6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFATVDGFDVVKEPAEARRRLGFVS 84 (218)
T ss_pred EEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEEcccCHHHHHhhEEEec
Confidence 455555433 5678889999999999999999999999999999987 4668999999977642 1112222222
Q ss_pred hhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 154 EDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 154 ~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
++. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|+
T Consensus 85 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i--lllDE 162 (218)
T cd03266 85 DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV--LLLDE 162 (218)
T ss_pred CCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 211 111110 011222334444422 223356666666 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHhc
Q 024315 209 PLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r~ 227 (269)
|+..++....+.+++.+++
T Consensus 163 Pt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 163 PTTGLDVMATRALREFIRQ 181 (218)
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 9999999988887766553
No 83
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=4e-14 Score=127.01 Aligned_cols=146 Identities=20% Similarity=0.202 Sum_probs=98.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......++++|++++|++++|+|+||||||||++.|++.++. +.+|.+.++|.++.. .++..+
T Consensus 17 ~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i 96 (269)
T PRK14259 17 QNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRI 96 (269)
T ss_pred EeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhce
Confidence 5666666666678899999999999999999999999999999998753 468999999987531 112223
Q ss_pred CCChhhH-------HHHHHH----------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 150 SFKAEDR-------VENIRR----------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 150 g~~~~~~-------~~~~~~----------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+|.+++. .+++.. . ......+...++ ...+...++++++| ..+++++.++++
T Consensus 97 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l- 175 (269)
T PRK14259 97 GMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEV- 175 (269)
T ss_pred EEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence 3333221 111110 0 011112222222 11123356666666 689999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHhc
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++....+.+++.+++
T Consensus 176 -llLDEPt~gLD~~~~~~l~~~l~~ 199 (269)
T PRK14259 176 -ILMDEPCSALDPISTLKIEETMHE 199 (269)
T ss_pred -EEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999888887766553
No 84
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=3.4e-15 Score=126.74 Aligned_cols=141 Identities=15% Similarity=0.251 Sum_probs=101.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
.++...+.......++|+.+++||+++|.||||+||||.+..+.|+. .+.+|.|++++.++.+ ..+.++||-+|
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~lPm~~RArlGigYLpQ 86 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITKLPMHKRARLGIGYLPQ 86 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCcccccCChHHHhhcCcccccc
Confidence 45555666777888999999999999999999999999999999988 5779999999999874 33445677776
Q ss_pred hHH--------HHHHHH--------------HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 155 DRV--------ENIRRI--------------GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 155 ~~~--------~~~~~l--------------~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
+-. +++..+ .+.-.++.++.+..+ ...++++++.| +++|+++.+|.| +++|
T Consensus 87 E~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f--iLLD 164 (243)
T COG1137 87 EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF--ILLD 164 (243)
T ss_pred cchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE--EEec
Confidence 531 111111 011233444444222 33446666655 799999999999 9999
Q ss_pred CChhHHHhcChhhHHH
Q 024315 208 VPLQVCEARDPKGLYK 223 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~ 223 (269)
+|++.+++-....+.+
T Consensus 165 EPFAGVDPiaV~dIq~ 180 (243)
T COG1137 165 EPFAGVDPIAVIDIQR 180 (243)
T ss_pred CCccCCCchhHHHHHH
Confidence 9999998876655443
No 85
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=3.8e-14 Score=131.54 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=99.1
Q ss_pred cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccC
Q 024315 80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRD 148 (269)
Q Consensus 80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~ 148 (269)
.++++.+. .....++++|.+++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..
T Consensus 5 ~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 83 (343)
T PRK11153 5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRVLVDGQDLTALSEKELRKARRQ 83 (343)
T ss_pred EeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 35555554 356778899999999999999999999999999999988 4678999999987642 11223
Q ss_pred CCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 149 LSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 149 ~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
++|.+++. .+++.. .......+...++.. .+..+++++++| ..+++++.++++
T Consensus 84 ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i-- 161 (343)
T PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV-- 161 (343)
T ss_pred EEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence 33332211 111110 011223344444432 233456777777 689999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+++.++
T Consensus 162 LlLDEPts~LD~~~~~~l~~~L~ 184 (343)
T PRK11153 162 LLCDEATSALDPATTRSILELLK 184 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999998888766554
No 86
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.53 E-value=4.3e-14 Score=123.53 Aligned_cols=144 Identities=16% Similarity=0.248 Sum_probs=97.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----c-cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----G-LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~-l~~~~g~~~~ 154 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. . .+..++|.++
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (232)
T cd03218 4 ENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKILLDGQDITKLPMHKRARLGIGYLPQ 82 (232)
T ss_pred EEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccCCHhHHHhccEEEecC
Confidence 35556655556788999999999999999999999999999999988 4668999999986532 1 1122233222
Q ss_pred hH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 155 DR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 155 ~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
+. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|+|
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEP 160 (232)
T cd03218 83 EASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF--LLLDEP 160 (232)
T ss_pred CccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEecCC
Confidence 11 111110 001122333334422 123356666666 689999999999 999999
Q ss_pred hhHHHhcChhhHHHHHh
Q 024315 210 LQVCEARDPKGLYKLAR 226 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r 226 (269)
+..++....+.+++.++
T Consensus 161 t~~LD~~~~~~~~~~l~ 177 (232)
T cd03218 161 FAGVDPIAVQDIQKIIK 177 (232)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 99999998888776554
No 87
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.3e-14 Score=124.11 Aligned_cols=62 Identities=31% Similarity=0.254 Sum_probs=56.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.|+++.-......+.++++.++||+++|+||||+|||||+|.|.|.+ .+.+|.+.++|.++.
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~ 66 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLN 66 (259)
T ss_pred eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChh
Confidence 56777777888899999999999999999999999999999999988 577899999998765
No 88
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.53 E-value=5e-14 Score=121.58 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=96.9
Q ss_pred ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCCCCC
Q 024315 81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~g~~ 152 (269)
++.+.+.. ....++.++++.+|++++|+|+||||||||++.|+|.+ ++.+|.|.++|.++... .+..++|.
T Consensus 5 ~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v 83 (214)
T cd03292 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVV 83 (214)
T ss_pred EEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHHHheEEE
Confidence 45555532 45678889999999999999999999999999999987 46689999999876420 11222332
Q ss_pred hhhH--------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 153 AEDR--------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 153 ~~~~--------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
+++. .+++.. . ..+...+...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 84 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllD 161 (214)
T cd03292 84 FQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI--LIAD 161 (214)
T ss_pred ecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence 2211 111110 0 11223333444422 223456666666 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHhc
Q 024315 208 VPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r~ 227 (269)
||+..++....+.+++.+++
T Consensus 162 EPt~~LD~~~~~~~~~~l~~ 181 (214)
T cd03292 162 EPTGNLDPDTTWEIMNLLKK 181 (214)
T ss_pred CCCCcCCHHHHHHHHHHHHH
Confidence 99999999888887766553
No 89
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.53 E-value=5.6e-14 Score=126.52 Aligned_cols=124 Identities=22% Similarity=0.278 Sum_probs=95.2
Q ss_pred CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHH
Q 024315 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV 166 (269)
Q Consensus 87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~ 166 (269)
+.+--..+++|.+..||+..|+|.||||||||.++|.+++ +|.+|.|+++|.++. .++..++++.+++ .+
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ept~G~ilv~g~di~-------~~~~~~Lr~~Rr~--~~ 108 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EPTRGEILVDGKDIA-------KLSAAELRELRRK--KI 108 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CCCCceEEECCcchh-------cCCHHHHHHHHhh--hh
Confidence 4566678899999999999999999999999999999977 688999999999986 5555555544333 44
Q ss_pred HHHHHhCCcce-----------------------------------------eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 167 AKLFADAGVIC-----------------------------------------IACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 167 a~~~~~~g~~~-----------------------------------------iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
++.||.+++.. .+..++++.+|| -.+|++..++++ +
T Consensus 109 sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~I--l 186 (386)
T COG4175 109 SMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDI--L 186 (386)
T ss_pred hhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCE--E
Confidence 55555554411 223345566777 599999999999 9
Q ss_pred EEeCChhHHHhcChhhHH
Q 024315 205 FMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~ 222 (269)
++|+|++.+++-.+..+.
T Consensus 187 LMDEaFSALDPLIR~~mQ 204 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQ 204 (386)
T ss_pred EecCchhhcChHHHHHHH
Confidence 999999999987776644
No 90
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.53 E-value=1.9e-14 Score=122.96 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=90.8
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCc-ccccCCCCChhhHHHHH-HHHHH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH-GLNRDLSFKAEDRVENI-RRIGE 165 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~-~l~~~~g~~~~~~~~~~-~~l~~ 165 (269)
.......++++++|++++|+|+||||||||++.|++.++ .+.+|.+.++|.++.. ..+..++|.+++..-.. ..+.+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 446778899999999999999999999999999999872 4568999999988643 22233444443321000 00111
Q ss_pred HHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 166 VAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 166 ~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
......... ..++++++| ..+++++.++++ +++|+|+..++....+.+++.+++
T Consensus 102 ~i~~~~~~~------~LS~G~~qrv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~ 156 (194)
T cd03213 102 TLMFAAKLR------GLSGGERKRVSIALELVSNPSL--LFLDEPTSGLDSSSALQVMSLLRR 156 (194)
T ss_pred HHHHHHHhc------cCCHHHHHHHHHHHHHHcCCCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 100000000 445666666 699999999998 999999999999998888776654
No 91
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.5e-14 Score=132.97 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=99.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~- 156 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. ..++.++|..|+.
T Consensus 7 ~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~ 85 (369)
T PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMNDVPPAERGVGMVFQSYA 85 (369)
T ss_pred EEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHhHCCEEEEeCCcc
Confidence 45666666666788999999999999999999999999999999988 4678999999987642 1111223222211
Q ss_pred -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++.. ...+...+...++.. .+..+|+++++| ..+++++.++++ +++|||+..
T Consensus 86 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l--LLLDEPts~ 163 (369)
T PRK11000 86 LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDEPLSN 163 (369)
T ss_pred cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence 111110 011223344444432 233457777777 699999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++...++.+.+.++
T Consensus 164 LD~~~~~~l~~~L~ 177 (369)
T PRK11000 164 LDAALRVQMRIEIS 177 (369)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988877654443
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=6e-14 Score=123.43 Aligned_cols=144 Identities=20% Similarity=0.237 Sum_probs=97.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~- 156 (269)
.++.+.+......+++++++.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..++|.+++.
T Consensus 6 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 84 (239)
T cd03296 6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDATDVPVQERNVGFVFQHYA 84 (239)
T ss_pred EeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCccccceEEEecCCc
Confidence 45666665666788899999999999999999999999999999987 4668999999987532 1111122222110
Q ss_pred -------HHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 157 -------VENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 157 -------~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
.+++.. .......+...++.. .+...++++++| ..+++++.++++ +++||
T Consensus 85 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDE 162 (239)
T cd03296 85 LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV--LLLDE 162 (239)
T ss_pred ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 111100 001122333344422 223356666666 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++....+.+++.++
T Consensus 163 P~~~LD~~~~~~l~~~l~ 180 (239)
T cd03296 163 PFGALDAKVRKELRRWLR 180 (239)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999999888776654
No 93
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.53 E-value=3.8e-14 Score=132.38 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=100.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCc--cEEEECCeecCcc--cccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK--LTYILDGDNCRHG--LNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~--g~i~l~g~~~~~~--l~~~~g~~~~~ 155 (269)
.++++.+......+++++++.+|++++|+||||||||||+++|++++ .+.+ |.|.++|.++... ..+.++|..|+
T Consensus 9 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~ 87 (362)
T TIGR03258 9 DHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLTHAPPHKRGLALLFQN 87 (362)
T ss_pred EEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCEEEEECCEECCCCCHHHCCEEEEECC
Confidence 45666666667788999999999999999999999999999999987 5668 9999999876421 11223333222
Q ss_pred H--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 156 R--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 156 ~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
. .+++.. ...+...+...++.. .+..+++++++| ..+|+++.++++ +++|+|+
T Consensus 88 ~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l--lLLDEP~ 165 (362)
T TIGR03258 88 YALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV--LLLDEPL 165 (362)
T ss_pred cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCcc
Confidence 1 111110 011222333334422 234457777777 699999999999 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..++...++.+.+.++
T Consensus 166 s~LD~~~r~~l~~~l~ 181 (362)
T TIGR03258 166 SALDANIRANMREEIA 181 (362)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999998888765544
No 94
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.53 E-value=2.6e-14 Score=143.64 Aligned_cols=134 Identities=22% Similarity=0.193 Sum_probs=95.7
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|+|.+ +|.+|.|.+||.++.. .+++.+++.+|+. +++
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 546 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN 546 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence 456679999999999999999999999999999988 5779999999998763 3444444444432 122
Q ss_pred HHH-----HHHHHHHHHhC-----------Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 160 IRR-----IGEVAKLFADA-----------GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 160 ~~~-----l~~~a~~~~~~-----------g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
+.. -.++....... |... -....+++++|| ..+|+++.++++ +++|||++.+|....
T Consensus 547 i~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i--LiLDEpTS~LD~~te 624 (686)
T TIGR03797 547 IAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI--LLFDEATSALDNRTQ 624 (686)
T ss_pred HhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHH
Confidence 110 00111111111 2221 123457788877 799999999999 999999999999998
Q ss_pred hhHHHHHhc
Q 024315 219 KGLYKLARE 227 (269)
Q Consensus 219 k~l~~~~r~ 227 (269)
+.+++.++.
T Consensus 625 ~~i~~~L~~ 633 (686)
T TIGR03797 625 AIVSESLER 633 (686)
T ss_pred HHHHHHHHH
Confidence 888877665
No 95
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.53 E-value=1.6e-14 Score=123.93 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=94.4
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
++.+.+......++.++.+.+|++++|+|+||||||||++.|++.+ ..+.+|.+.++|.++... .+..++|.++
T Consensus 5 ~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 84 (200)
T cd03217 5 DLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQ 84 (200)
T ss_pred EEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeec
Confidence 4555554556778899999999999999999999999999999985 256789999999887531 1122444444
Q ss_pred hHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 155 DRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 155 ~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+..- +... .+...+ .......++++++| ..+++++.++++ +++|+|+..++....+.+.+.++
T Consensus 85 ~~~~-~~~~-~~~~~l-----~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~L~ 148 (200)
T cd03217 85 YPPE-IPGV-KNADFL-----RYVNEGFSGGEKKRNEILQLLLLEPDL--AILDEPDSGLDIDALRLVAEVIN 148 (200)
T ss_pred Chhh-ccCc-cHHHHH-----hhccccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 3211 0000 000001 11122455666666 689999999999 99999999999888777666554
No 96
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.53 E-value=5.3e-14 Score=128.24 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=93.8
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH--------
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR-------- 156 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~-------- 156 (269)
.....+++++.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. .++..++|.+++.
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 345678889999999999999999999999999999988 4678999999987642 1122233333221
Q ss_pred HHHHHH---H---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315 157 VENIRR---I---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (269)
Q Consensus 157 ~~~~~~---l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k 219 (269)
.+++.. . ......+...++.. .+...++++++| ..+++++.++++ +++|||+..++...++
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~ 161 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV--LFLDEPTTGLDPRTRR 161 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHH
Confidence 111111 0 11223344444422 233456666666 699999999999 9999999999998887
Q ss_pred hHHHHHh
Q 024315 220 GLYKLAR 226 (269)
Q Consensus 220 ~l~~~~r 226 (269)
.+.+.++
T Consensus 162 ~l~~~l~ 168 (302)
T TIGR01188 162 AIWDYIR 168 (302)
T ss_pred HHHHHHH
Confidence 7665443
No 97
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.53 E-value=6.3e-14 Score=123.30 Aligned_cols=144 Identities=20% Similarity=0.234 Sum_probs=98.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~ 153 (269)
.++.+.+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. ..+..++|.+
T Consensus 5 ~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 83 (240)
T PRK09493 5 KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEAGMVF 83 (240)
T ss_pred EeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhceEEEe
Confidence 45666665556788899999999999999999999999999999987 4668999999987642 1122223222
Q ss_pred hhH--------HHHHHH------------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 154 EDR--------VENIRR------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 154 ~~~--------~~~~~~------------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
++. .+.+.. . ..+...+...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 84 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllD 161 (240)
T PRK09493 84 QQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL--MLFD 161 (240)
T ss_pred cccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE--EEEc
Confidence 211 111100 0 11223334444422 123346666666 689999999998 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
+|+..++....+.+++.++
T Consensus 162 EP~~~LD~~~~~~l~~~l~ 180 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQ 180 (240)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999999998888776654
No 98
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.53 E-value=3e-14 Score=121.03 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=92.4
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCChhhH-------
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKAEDR------- 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~~~~------- 156 (269)
...+++++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+++.
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 3567889999999999999999999999999999987 4668999999987631 1122233333321
Q ss_pred --HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 157 --VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 157 --~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
.+++.. . ..+...+...++.. .+...++++++| ..+++++.++++ +++|||+..++...
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~~ 162 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV--LLLDEPTAGLDPAG 162 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCHHH
Confidence 111110 0 01122333334422 233446666666 689999999999 99999999999998
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+.+.+++
T Consensus 163 ~~~~~~~l~~ 172 (190)
T TIGR01166 163 REQMLAILRR 172 (190)
T ss_pred HHHHHHHHHH
Confidence 8887766553
No 99
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=4.1e-14 Score=123.85 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=96.7
Q ss_pred ceEEeeCce----eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCC
Q 024315 81 NILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDL 149 (269)
Q Consensus 81 ~~~~~~~~v----~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~ 149 (269)
++.+.+... ...+++++++.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++... .+..+
T Consensus 6 ~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (233)
T cd03258 6 NVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRI 84 (233)
T ss_pred cceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 445554333 56788999999999999999999999999999999884 6689999999876421 12222
Q ss_pred CCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 150 SFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 150 g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
+|.+++. .+++.. .......+...++.. .+...++++++| ..+++++.++++ +
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--l 162 (233)
T cd03258 85 GMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV--L 162 (233)
T ss_pred EEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 3222211 111110 011222334444432 233456666666 689999999999 9
Q ss_pred EEeCChhHHHhcChhhHHHHHh
Q 024315 205 FMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++|||+..++....+.+++.++
T Consensus 163 lLDEP~~~LD~~~~~~l~~~l~ 184 (233)
T cd03258 163 LCDEATSALDPETTQSILALLR 184 (233)
T ss_pred EecCCCCcCCHHHHHHHHHHHH
Confidence 9999999999998888776654
No 100
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4.3e-14 Score=132.65 Aligned_cols=141 Identities=20% Similarity=0.204 Sum_probs=99.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~- 156 (269)
.++.+.+......+.+++.+.+|++++|+||||||||||+++|+|++ .+.+|.|+++|.++.. ..++.++|..|+.
T Consensus 23 ~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~ 101 (377)
T PRK11607 23 RNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA 101 (377)
T ss_pred EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEEeCCCc
Confidence 46666666666778899999999999999999999999999999987 5678999999988642 1112233332221
Q ss_pred -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++.. ..++..++...++.. .+..+++++++| ..+|+++.++++ +++|||+..
T Consensus 102 lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l--LLLDEP~s~ 179 (377)
T PRK11607 102 LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL--LLLDEPMGA 179 (377)
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence 111110 011223333444432 234457777777 699999999999 999999999
Q ss_pred HHhcChhhHHH
Q 024315 213 CEARDPKGLYK 223 (269)
Q Consensus 213 l~~R~~k~l~~ 223 (269)
++...++.+.+
T Consensus 180 LD~~~r~~l~~ 190 (377)
T PRK11607 180 LDKKLRDRMQL 190 (377)
T ss_pred CCHHHHHHHHH
Confidence 99988877653
No 101
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=5.2e-14 Score=124.04 Aligned_cols=144 Identities=20% Similarity=0.255 Sum_probs=97.2
Q ss_pred ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
++.+.+.. ....+.+++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..++|.+++
T Consensus 5 ~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 83 (242)
T cd03295 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELRRKIGYVIQQ 83 (242)
T ss_pred EEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcCcCChHHhhcceEEEccC
Confidence 44555544 45678889999999999999999999999999999987 4668999999987642 112223332221
Q ss_pred H--------HHHHHH------------HHHHHHHHHhCCcce------eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 156 R--------VENIRR------------IGEVAKLFADAGVIC------IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 156 ~--------~~~~~~------------l~~~a~~~~~~g~~~------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|+
T Consensus 84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDE 161 (242)
T cd03295 84 IGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL--LLMDE 161 (242)
T ss_pred ccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE--EEecC
Confidence 1 111110 011223334444431 123356666666 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHhc
Q 024315 209 PLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r~ 227 (269)
|+..++....+.+.+.+++
T Consensus 162 Pt~~LD~~~~~~l~~~L~~ 180 (242)
T cd03295 162 PFGALDPITRDQLQEEFKR 180 (242)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999888877665543
No 102
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.52 E-value=2.8e-14 Score=120.70 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=89.5
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHH--HHHH--
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRV--ENIR-- 161 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~--~~~~-- 161 (269)
..+.+++.+++|++++|+|+||||||||++.|++.++ +.+|.+.++|.++... .+..++|..++.. ....
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 5788899999999999999999999999999999884 6689999999876521 1233455444321 0000
Q ss_pred HHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 162 RIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 162 ~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.+.+...... ..++++++| ..+++++.++++ +++|||+..++....+.+.+.+++
T Consensus 94 t~~e~l~~~~---------~LS~G~~qrl~la~al~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 94 SVAENIALSS---------LLSGGNQQKVVLARWLARDPRV--LILDEPTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred cHHHHHHHHh---------hcCHHHHHHHHHHHHHccCCCE--EEECCCCcCCCHHHHHHHHHHHHH
Confidence 0111110000 055666666 699999999999 999999999999988887766553
No 103
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4.4e-14 Score=127.92 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=95.0
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCChhhH-------
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKAEDR------- 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~~~~------- 156 (269)
...+++++++.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+|+.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 4678889999999999999999999999999999988 5678999999987742 1223344444321
Q ss_pred --HHHHHH-----------H-HHHHHHHHhCCcc--e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 157 --VENIRR-----------I-GEVAKLFADAGVI--C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 157 --~~~~~~-----------l-~~~a~~~~~~g~~--~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
.+.+.. . ..+...+...++. . .+...++++++| .++++++.++++ +++|+|+..++.
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~l--lllDEPt~gLD~ 177 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI--LILDEPTAGLDP 177 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCE--EEEECCccCCCH
Confidence 111110 0 1122334444542 1 133456677776 699999999999 999999999999
Q ss_pred cChhhHHHHHh
Q 024315 216 RDPKGLYKLAR 226 (269)
Q Consensus 216 R~~k~l~~~~r 226 (269)
..+..+.+.++
T Consensus 178 ~~~~~l~~~l~ 188 (287)
T PRK13637 178 KGRDEILNKIK 188 (287)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 104
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=7e-14 Score=120.59 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=96.7
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH-
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR- 156 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~- 156 (269)
++++.+......+.+++++++| +++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. .++..++|.+++.
T Consensus 5 ~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~ 82 (211)
T cd03264 5 NLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG 82 (211)
T ss_pred EEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCCccccchHHHHhheEEecCCCc
Confidence 4555555556778899999999 99999999999999999999987 4668999999976532 1112222222211
Q ss_pred -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+.+.. .......+...++.. .+...++++++| ..+++++.++++ +++|+|+..
T Consensus 83 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~ 160 (211)
T cd03264 83 VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI--LIVDEPTAG 160 (211)
T ss_pred ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence 111110 011222333344422 233456666666 689999999999 999999999
Q ss_pred HHhcChhhHHHHHhc
Q 024315 213 CEARDPKGLYKLARE 227 (269)
Q Consensus 213 l~~R~~k~l~~~~r~ 227 (269)
++....+.+++.+++
T Consensus 161 LD~~~~~~l~~~l~~ 175 (211)
T cd03264 161 LDPEERIRFRNLLSE 175 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999988887766653
No 105
>PRK10908 cell division protein FtsE; Provisional
Probab=99.52 E-value=5.7e-14 Score=122.17 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=95.9
Q ss_pred ceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCCCCC
Q 024315 81 NILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~g~~ 152 (269)
++.+.+ ......+.+++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++... .+..++|.
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~ 84 (222)
T PRK10908 6 HVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDITRLKNREVPFLRRQIGMI 84 (222)
T ss_pred eeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCChhHHHHHHhheEEE
Confidence 455554 3345678889999999999999999999999999999988 46789999999876420 12223332
Q ss_pred hhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 153 AEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 153 ~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
+++. .+++.. ...+...+...++.. .....++++++| ..+++++.++++ +++|
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllD 162 (222)
T PRK10908 85 FQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV--LLAD 162 (222)
T ss_pred ecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence 2211 111110 001122333344322 233456666666 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
||+..++....+.+.+.++
T Consensus 163 EPt~~LD~~~~~~l~~~l~ 181 (222)
T PRK10908 163 EPTGNLDDALSEGILRLFE 181 (222)
T ss_pred CCCCcCCHHHHHHHHHHHH
Confidence 9999999988777766555
No 106
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=114.01 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=90.3
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHH
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA 167 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a 167 (269)
+....+.+||.+++|+.++|+||||||||||.|+++-+. .+.+|++++.|.++. .+.++..+..+.++.|..
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs-------~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVS-------TLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCcccc-------ccChHHHHHHHHHHHcCc
Confidence 455677889999999999999999999999999999977 577999999999987 444444443333332211
Q ss_pred ----------------------------HHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 168 ----------------------------KLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 168 ----------------------------~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
.++.++++- ..++..++++++| ..+|.+.--+++ +++|++++.+
T Consensus 87 aLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~I--LLLDE~TsAL 164 (223)
T COG4619 87 ALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKI--LLLDEITSAL 164 (223)
T ss_pred cccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCce--EEecCchhhc
Confidence 222333331 1244456677776 688888888888 8999999999
Q ss_pred HhcChhhH
Q 024315 214 EARDPKGL 221 (269)
Q Consensus 214 ~~R~~k~l 221 (269)
++.+.+.+
T Consensus 165 D~~nkr~i 172 (223)
T COG4619 165 DESNKRNI 172 (223)
T ss_pred ChhhHHHH
Confidence 98775443
No 107
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.52 E-value=8.7e-14 Score=119.45 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=97.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhh-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAED- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~- 155 (269)
.++++.+......+++++.+++|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++.. .++..++|.+++
T Consensus 4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (201)
T cd03231 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLDFQRDSIARGLLYLGHAP 82 (201)
T ss_pred EEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccccHHhhhheEEecccc
Confidence 35555555556778999999999999999999999999999999987 4678999999977532 112222222211
Q ss_pred -------HHHHHHH------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 156 -------RVENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 156 -------~~~~~~~------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
..+++.. .......+...++.. .+...++++++| ..+++++.++++ +++|+|+..++...
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~LD~~~ 160 (201)
T cd03231 83 GIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL--WILDEPTTALDKAG 160 (201)
T ss_pred ccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHH
Confidence 1111110 011222333334422 223346666666 689999999999 99999999999998
Q ss_pred hhhHHHHHh
Q 024315 218 PKGLYKLAR 226 (269)
Q Consensus 218 ~k~l~~~~r 226 (269)
.+.+.+.++
T Consensus 161 ~~~l~~~l~ 169 (201)
T cd03231 161 VARFAEAMA 169 (201)
T ss_pred HHHHHHHHH
Confidence 888776665
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=8.5e-14 Score=123.20 Aligned_cols=146 Identities=21% Similarity=0.194 Sum_probs=99.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc----ccccCCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH----GLNRDLSF 151 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~----~l~~~~g~ 151 (269)
.++.+.+......+++++++.+|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++.. .++..++|
T Consensus 7 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 86 (250)
T PRK14247 7 RDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQM 86 (250)
T ss_pred EeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEE
Confidence 3555555555677889999999999999999999999999999998853 358999999987642 11222232
Q ss_pred ChhhH--------HHHHHH--------------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 152 KAEDR--------VENIRR--------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 152 ~~~~~--------~~~~~~--------------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
.+++. .+++.. ...+...+...++. ..+...++++++| ..+++++.+++
T Consensus 87 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 166 (250)
T PRK14247 87 VFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPE 166 (250)
T ss_pred EeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 22211 111110 01122233334431 1233456666666 68899999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 167 l--llLDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14247 167 V--LLADEPTANLDPENTAKIESLFLE 191 (250)
T ss_pred E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999998887766654
No 109
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=6.8e-14 Score=124.61 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=96.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh----
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED---- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~---- 155 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++... ....+|..++
T Consensus 5 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~~~ 82 (255)
T PRK11248 5 SHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVEGP-GAERGVVFQNEGLL 82 (255)
T ss_pred EEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCC-CCcEEEEeCCCccC
Confidence 35555555555678899999999999999999999999999999987 46689999999876421 1111111111
Q ss_pred ----HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 156 ----RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 156 ----~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
..+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|||+..++
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l--llLDEPt~~LD 160 (255)
T PRK11248 83 PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL--LLLDEPFGALD 160 (255)
T ss_pred CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCC
Confidence 1111100 011223344444422 233456666666 689999999999 99999999999
Q ss_pred hcChhhHHHHHh
Q 024315 215 ARDPKGLYKLAR 226 (269)
Q Consensus 215 ~R~~k~l~~~~r 226 (269)
....+.+.+.++
T Consensus 161 ~~~~~~l~~~L~ 172 (255)
T PRK11248 161 AFTREQMQTLLL 172 (255)
T ss_pred HHHHHHHHHHHH
Confidence 988888766544
No 110
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1e-13 Score=122.89 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=98.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++++.+......+++++.+.+|++++|+|+||||||||+++|+|.+. + +.+|.|.++|.++.. .++..+
T Consensus 10 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 89 (253)
T PRK14242 10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRV 89 (253)
T ss_pred eeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcE
Confidence 456666655567889999999999999999999999999999999763 1 458999999987632 112233
Q ss_pred CCChhhH-------HHHHHH-------------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR-------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~-------------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. ..++...+...++. ......++++++| ..+++++.+++
T Consensus 90 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ 169 (253)
T PRK14242 90 GMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPE 169 (253)
T ss_pred EEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3333221 111110 00112223333331 1123456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|||+..++....+.+.+.+++
T Consensus 170 l--lllDEPt~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14242 170 V--LLMDEPASALDPIATQKIEELIHE 194 (253)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 8 999999999999988887766654
No 111
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=6.3e-14 Score=125.74 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=98.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~ 153 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. .++..++|.+
T Consensus 5 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 83 (271)
T PRK13638 5 SDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAVLWQGKPLDYSKRGLLALRQQVATVF 83 (271)
T ss_pred EEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEEEECCEEcccccCCHHHHHhheEEEe
Confidence 35666665555778899999999999999999999999999999988 4668999999987631 1122334433
Q ss_pred hhH---------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 154 EDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 154 ~~~---------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
++. .+.+.. . ..+...+...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 84 q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l--llLD 161 (271)
T PRK13638 84 QDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY--LLLD 161 (271)
T ss_pred eChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence 321 111110 0 01112233333321 233456666666 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHhc
Q 024315 208 VPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r~ 227 (269)
||+..++....+.+.+.+++
T Consensus 162 EPt~~LD~~~~~~l~~~l~~ 181 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRR 181 (271)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999988887666543
No 112
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.52 E-value=2.5e-13 Score=114.16 Aligned_cols=157 Identities=22% Similarity=0.161 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc-------CCCCC------hhhH-HHHHHHHHHH
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-------DLSFK------AEDR-VENIRRIGEV 166 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~-------~~g~~------~~~~-~~~~~~l~~~ 166 (269)
+|.+++|+|++||||||+++.|+..+..+ .+.++.|++...+.. .+.+. ++.. ...+......
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence 47899999999999999999999887422 345566655432211 11111 1111 1233334445
Q ss_pred HHHHHhCCcceeeccCCh-HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccc-cccccCCCC
Q 024315 167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTG-IDDPYEPPL 244 (269)
Q Consensus 167 a~~~~~~g~~~iv~~~~~-~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~-i~~~~e~p~ 244 (269)
+..+...|..++++.... ....++.++.+.. .++..|++++|.++|.+|..++ .+....+.. ..+.+++|.
T Consensus 78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R------~~~~~~~~~~~~~~~~~~~ 150 (175)
T cd00227 78 VAAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPGEVAEGRETAR------GDRVPGQARKQARVVHAGV 150 (175)
T ss_pred HHHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhc------CCccchHHHHHHHHhcCCC
Confidence 555778899888876554 4455566665544 5677899999999999998543 333322222 124455677
Q ss_pred CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 245 NCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 245 ~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
.++++|||+ ..++++++. |.+.|
T Consensus 151 ~~dl~iDts-~~s~~e~a~~i~~~l 174 (175)
T cd00227 151 EYDLEVDTT-HKTPIECARAIAARV 174 (175)
T ss_pred cceEEEECC-CCCHHHHHHHHHHhc
Confidence 789999995 677888776 76654
No 113
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=8.7e-14 Score=121.95 Aligned_cols=145 Identities=24% Similarity=0.292 Sum_probs=97.8
Q ss_pred cceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------c-cc
Q 024315 80 TNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L-NR 147 (269)
Q Consensus 80 ~~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l-~~ 147 (269)
.++.+.+.. ....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++... . +.
T Consensus 9 ~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 87 (233)
T PRK11629 9 DNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGDVIFNGQPMSKLSSAAKAELRNQ 87 (233)
T ss_pred EeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCCHHHHHHHHhc
Confidence 345555432 45678889999999999999999999999999999988 46789999999876421 1 12
Q ss_pred CCCCChhhH--------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 148 DLSFKAEDR--------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 148 ~~g~~~~~~--------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
.++|.+++. .+++.. . ..+...+...++.. .+...++++++| ..+++++.++++
T Consensus 88 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l- 166 (233)
T PRK11629 88 KLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL- 166 (233)
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 233322211 111110 0 11223344445432 233456666666 689999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHhc
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++....+.+++.+++
T Consensus 167 -llLDEPt~~LD~~~~~~l~~~l~~ 190 (233)
T PRK11629 167 -VLADEPTGNLDARNADSIFQLLGE 190 (233)
T ss_pred -EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999888887766543
No 114
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.52 E-value=6.1e-14 Score=123.17 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=97.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChhhH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAEDR 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~~~ 156 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++... ....++|.+++.
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~ 83 (236)
T TIGR03864 5 AGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLRRAPRAALARLGVVFQQP 83 (236)
T ss_pred EeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcccCChhhhhhEEEeCCCC
Confidence 34555555556778899999999999999999999999999999987 46789999999876320 111122222210
Q ss_pred --------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 --------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 --------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+++.. .......+...++.. .+...++++++| ..+++++.++++ +++|+|+.
T Consensus 84 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP~~ 161 (236)
T TIGR03864 84 TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL--LLLDEPTV 161 (236)
T ss_pred CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence 111110 011122333444422 233456666666 699999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++....+.+++.++
T Consensus 162 ~LD~~~~~~l~~~l~ 176 (236)
T TIGR03864 162 GLDPASRAAIVAHVR 176 (236)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888776554
No 115
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.52 E-value=7.2e-14 Score=124.73 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=95.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh----
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED---- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~---- 155 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||++.|++.+ .+.+|.|.+++.++.. ++..++|..++
T Consensus 16 ~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~-~~~~i~~v~q~~~l~ 93 (257)
T PRK11247 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGELLAGTAPLAE-AREDTRLMFQDARLL 93 (257)
T ss_pred EEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEHHH-hhCceEEEecCccCC
Confidence 45555555555678889999999999999999999999999999988 4668999998876421 11111111111
Q ss_pred ----HHHHHHH------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315 156 ----RVENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 156 ----~~~~~~~------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
..+++.. -......+...++.. .+...++++++| ..+++++.++++ +++|||+..++....+.
T Consensus 94 ~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l--llLDEPt~~LD~~~~~~ 171 (257)
T PRK11247 94 PWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL--LLLDEPLGALDALTRIE 171 (257)
T ss_pred CCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHHHH
Confidence 1111110 011223334444422 233456666666 699999999999 99999999999988877
Q ss_pred HHHHHh
Q 024315 221 LYKLAR 226 (269)
Q Consensus 221 l~~~~r 226 (269)
+++.++
T Consensus 172 l~~~L~ 177 (257)
T PRK11247 172 MQDLIE 177 (257)
T ss_pred HHHHHH
Confidence 665543
No 116
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=7.8e-14 Score=124.91 Aligned_cols=146 Identities=19% Similarity=0.151 Sum_probs=99.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++.+++|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++.. .++..+
T Consensus 23 ~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (267)
T PRK14235 23 RDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARV 102 (267)
T ss_pred EeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhce
Confidence 4666666555667889999999999999999999999999999998853 368999999977631 112223
Q ss_pred CCChhh-------HHHHHHH--------------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCC
Q 024315 150 SFKAED-------RVENIRR--------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 150 g~~~~~-------~~~~~~~--------------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+|..++ ..+++.. ..++...+...++. ..+..+++++++| ..+++++.++
T Consensus 103 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p 182 (267)
T PRK14235 103 GMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSP 182 (267)
T ss_pred EEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 332221 1111110 01112233333442 1233456666666 6999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|+|+..++....+.+++.+++
T Consensus 183 ~l--llLDEPt~~LD~~~~~~l~~~L~~ 208 (267)
T PRK14235 183 EV--ILMDEPCSALDPIATAKVEELIDE 208 (267)
T ss_pred CE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99 999999999999988887766553
No 117
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.52 E-value=9.3e-14 Score=120.57 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=92.7
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cc-cCCCCChhhH----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN-RDLSFKAEDR---- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~-~~~g~~~~~~---- 156 (269)
....+..++.+++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++... ++ ..++|.+++.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 45678889999999999999999999999999999988 46689999999775320 01 1222222210
Q ss_pred ----HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 157 ----VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 157 ----~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
.+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|||+..++.
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~ 174 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSL--VLADEPTGNLDN 174 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE--EEEeCCCCcCCH
Confidence 111100 011223334444422 233456677776 689999999999 999999999999
Q ss_pred cChhhHHHHHh
Q 024315 216 RDPKGLYKLAR 226 (269)
Q Consensus 216 R~~k~l~~~~r 226 (269)
...+.+.+.++
T Consensus 175 ~~~~~l~~~l~ 185 (221)
T TIGR02211 175 NNAKIIFDLML 185 (221)
T ss_pred HHHHHHHHHHH
Confidence 88888776655
No 118
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.51 E-value=5.7e-14 Score=134.35 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=105.7
Q ss_pred ccceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----c-------cc
Q 024315 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----G-------LN 146 (269)
Q Consensus 79 ~~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~-------l~ 146 (269)
..+++..++.|.+.+.++|.+++||+++|+|.||+|||||.|.|+|.+ .|.+|.|+++|..+.. . .+
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 367889999999999999999999999999999999999999999988 5779999999998752 0 11
Q ss_pred cCCCCChh----hH-------HH-----HHHHHHH-HHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 147 RDLSFKAE----DR-------VE-----NIRRIGE-VAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 147 ~~~g~~~~----~~-------~~-----~~~~l~~-~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
+++.+.+. +. .+ ..+.+.+ ...++...+.. ..+..++..++|. +++|++..++++ +
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl--l 167 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV--L 167 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 11111110 00 00 0011112 22334444442 2233445555554 899999998888 9
Q ss_pred EEeCChhHHHhcChhhHHHHHhcCcccc
Q 024315 205 FMDVPLQVCEARDPKGLYKLAREGKVKG 232 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~~~~r~g~~~~ 232 (269)
.||||++.|..+..+.+++..++=+-++
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~G 195 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQG 195 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999887766444333
No 119
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.51 E-value=2.9e-13 Score=116.41 Aligned_cols=143 Identities=18% Similarity=0.231 Sum_probs=96.9
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChh---
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAE--- 154 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~--- 154 (269)
+++..+......+.+++.+++|++++|+|+||||||||++.|++.++ +.+|.|.++|.++.. ..+..+++..+
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
T PRK13538 6 NLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPG 84 (204)
T ss_pred EEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccc
Confidence 45555555567889999999999999999999999999999999884 668999999987642 11111111111
Q ss_pred -----hHHHHHHH---------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 155 -----DRVENIRR---------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 155 -----~~~~~~~~---------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
...+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|||+..++.
T Consensus 85 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD~ 162 (204)
T PRK13538 85 IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL--WILDEPFTAIDK 162 (204)
T ss_pred cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCH
Confidence 11111110 011222334444422 223446666666 689999999999 999999999999
Q ss_pred cChhhHHHHHh
Q 024315 216 RDPKGLYKLAR 226 (269)
Q Consensus 216 R~~k~l~~~~r 226 (269)
...+.+++.++
T Consensus 163 ~~~~~l~~~l~ 173 (204)
T PRK13538 163 QGVARLEALLA 173 (204)
T ss_pred HHHHHHHHHHH
Confidence 98888776655
No 120
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.51 E-value=7.5e-14 Score=123.44 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=98.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------------cccc
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------------GLNR 147 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------------~l~~ 147 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++.. .++.
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T PRK11264 7 KNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIRQLRQ 85 (250)
T ss_pred eceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHHHhhh
Confidence 456666655667889999999999999999999999999999999874 668999999876531 1112
Q ss_pred CCCCChhhH--------HHHHHH------------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCc
Q 024315 148 DLSFKAEDR--------VENIRR------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 148 ~~g~~~~~~--------~~~~~~------------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
.++|.+++. .+++.. . ......+...++.. .....++++++| ..+++++.++++
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~l 165 (250)
T PRK11264 86 HVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEV 165 (250)
T ss_pred hEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCE
Confidence 223222211 111110 0 11222334444432 233346666666 689999999999
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHh
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+++.++
T Consensus 166 --llLDEPt~~LD~~~~~~l~~~l~ 188 (250)
T PRK11264 166 --ILFDEPTSALDPELVGEVLNTIR 188 (250)
T ss_pred --EEEeCCCccCCHHHHHHHHHHHH
Confidence 99999999999998888776544
No 121
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.51 E-value=1e-13 Score=121.17 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=96.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++.+.+......+..++++++|++++|+|+||||||||+++|+|.++ +.+|.+.++|.++... .+..++|.++
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (230)
T TIGR03410 4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQ 82 (230)
T ss_pred EeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEecc
Confidence 356666655567789999999999999999999999999999999884 6689999999876421 1122333332
Q ss_pred hH--------HHHHHHH--------HH-HHHHHHhCC-c----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 155 DR--------VENIRRI--------GE-VAKLFADAG-V----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 155 ~~--------~~~~~~l--------~~-~a~~~~~~g-~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
+. .+++... .+ ....+...+ + ...+...++++++| ..+++++.++++ +++|+|+.
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i--lllDEPt~ 160 (230)
T TIGR03410 83 GREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL--LLLDEPTE 160 (230)
T ss_pred CCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEecCCcc
Confidence 21 1111100 00 011111111 1 11233346666666 688999999999 99999999
Q ss_pred HHHhcChhhHHHHHhc
Q 024315 212 VCEARDPKGLYKLARE 227 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r~ 227 (269)
.++....+.+.+.+++
T Consensus 161 ~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRR 176 (230)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999988887766553
No 122
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.51 E-value=7.5e-14 Score=121.52 Aligned_cols=134 Identities=22% Similarity=0.252 Sum_probs=92.0
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH------
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR------ 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~------ 156 (269)
...+.+++++++|++++|+|+||||||||++.|++.+ .+.+|.|.++|.++.. ..+..++|.+++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 4678889999999999999999999999999999987 4678999999987642 1122233322221
Q ss_pred ----HHHHH------------HH-HHH-HHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 ----VENIR------------RI-GEV-AKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 ----~~~~~------------~l-~~~-a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++. .. ... ...+...++. . .+...++++++| ..+++++.++++ +++|||+..
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEPt~~ 175 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKL--LIADEPTSA 175 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCE--EEecCCCCC
Confidence 01110 00 011 1233344442 1 123356666666 689999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++....+.+++.++
T Consensus 176 LD~~~~~~l~~~l~ 189 (228)
T cd03257 176 LDVSVQAQILDLLK 189 (228)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988888776655
No 123
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.51 E-value=1.1e-13 Score=120.93 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=97.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++.+.+......+++++++.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. ..+..++|..++
T Consensus 11 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 89 (225)
T PRK10247 11 QNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQT 89 (225)
T ss_pred eccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEcCcCCHHHHHhccEEEecc
Confidence 45666665556788899999999999999999999999999999977 4678999999976532 111222322221
Q ss_pred -------HHHHHHH----------HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 156 -------RVENIRR----------IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 156 -------~~~~~~~----------l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
..+++.. .......+...++.. .+...++++++| ..+++++.++++ +++|+|+..
T Consensus 90 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~ 167 (225)
T PRK10247 90 PTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV--LLLDEITSA 167 (225)
T ss_pred cccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence 1111110 011223334444421 133345666666 689999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++....+.+.+.++
T Consensus 168 LD~~~~~~l~~~l~ 181 (225)
T PRK10247 168 LDESNKHNVNEIIH 181 (225)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988777665544
No 124
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.51 E-value=6.5e-14 Score=127.63 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=99.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~ 156 (269)
.++.+.++.....++.+|.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+++.
T Consensus 6 ~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 6 SSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHN 84 (301)
T ss_pred EEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccChHHHHhceEEecCCC
Confidence 45666666677889999999999999999999999999999999987 4678999999987642 1222233332211
Q ss_pred --------HHHHH---HH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 --------VENIR---RI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 --------~~~~~---~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+++. .+ ......+...++.. .+...++++++| ..+++++.++++ +++|+|+.
T Consensus 85 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--liLDEPt~ 162 (301)
T TIGR03522 85 PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV--LILDEPTT 162 (301)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence 11111 10 11222333344422 233456666666 699999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++...++.+.+.++
T Consensus 163 gLD~~~~~~l~~~l~ 177 (301)
T TIGR03522 163 GLDPNQLVEIRNVIK 177 (301)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999998887665554
No 125
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=7.3e-14 Score=123.04 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=97.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC----------cccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----------HGLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~----------~~l~~~~ 149 (269)
.++.+.+......+++++++++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++. ...+..+
T Consensus 6 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i 84 (242)
T PRK11124 6 NGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIRELRRNV 84 (242)
T ss_pred EeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecccccccchhhHHHHHhhe
Confidence 45666665556788899999999999999999999999999999987 467899999998752 0112223
Q ss_pred CCChhhH--------HHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 150 SFKAEDR--------VENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 150 g~~~~~~--------~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
+|.+++. .+++.. .......+...++.. .+...++++++| ..+++++.++++
T Consensus 85 ~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l-- 162 (242)
T PRK11124 85 GMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV-- 162 (242)
T ss_pred EEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence 3322211 111110 011222333344422 133456666666 689999999998
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+++.++
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~ 185 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIR 185 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHH
Confidence 99999999999988887766554
No 126
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.51 E-value=8.4e-14 Score=123.08 Aligned_cols=145 Identities=21% Similarity=0.210 Sum_probs=98.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC-----ccEEEECCeecCc------ccccC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRH------GLNRD 148 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~-----~g~i~l~g~~~~~------~l~~~ 148 (269)
.++.+.+......+++++++++|++++|+|+||||||||++.|+|.+. +. +|.|.++|.++.. ..+..
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (247)
T TIGR00972 5 ENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVELRRR 83 (247)
T ss_pred EEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHHHhh
Confidence 355555555567788999999999999999999999999999999885 44 8999999987642 11222
Q ss_pred CCCChhhH-------HHHHHH------------H-HHHHHHHHhCCcc----e----eeccCChHHHHH-HHHHHhCCCC
Q 024315 149 LSFKAEDR-------VENIRR------------I-GEVAKLFADAGVI----C----IACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 149 ~g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~----~----iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
++|.+++. .+++.. . ......+...++. . .+...++++++| ..+++++.++
T Consensus 84 i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 163 (247)
T TIGR00972 84 VGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEP 163 (247)
T ss_pred eEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 33322221 111110 0 1112233334443 1 123456666666 6899999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|||+..++......+++.+++
T Consensus 164 ~l--lllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 164 EV--LLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred CE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 98 999999999999988887766553
No 127
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=122.15 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=98.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+++
T Consensus 7 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~ 85 (241)
T PRK14250 7 KEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQ 85 (241)
T ss_pred EeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcChHHhhhcEEEEecC
Confidence 35666665555678899999999999999999999999999999987 4678999999987632 112223333322
Q ss_pred H-------HHHHHH--------HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 156 R-------VENIRR--------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 156 ~-------~~~~~~--------l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
. .+++.. ..+....+...++. . .....++++++| ..+++++.++++ +++|+|+..++
T Consensus 86 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD 163 (241)
T PRK14250 86 PHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV--LLLDEPTSALD 163 (241)
T ss_pred chhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCC
Confidence 1 111110 01122233333442 1 233456666666 689999999999 99999999999
Q ss_pred hcChhhHHHHHhc
Q 024315 215 ARDPKGLYKLARE 227 (269)
Q Consensus 215 ~R~~k~l~~~~r~ 227 (269)
....+.+++.++.
T Consensus 164 ~~~~~~l~~~l~~ 176 (241)
T PRK14250 164 PTSTEIIEELIVK 176 (241)
T ss_pred HHHHHHHHHHHHH
Confidence 9888887766553
No 128
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=5.1e-14 Score=122.85 Aligned_cols=144 Identities=10% Similarity=0.128 Sum_probs=108.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-- 157 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-- 157 (269)
++++..+++..+.++.||.+++|++.+++|+||+||||+++.|.+++ .+..|.|.++|.++.......+||-+++|-
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy 84 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEITWNGGPLSQEIKNRIGYLPEERGLY 84 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceEEEcCcchhhhhhhhcccChhhhccC
Confidence 45667778899999999999999999999999999999999999999 567899999999999888888899998872
Q ss_pred ------HHHHHHH------------HHHHHHHhCCcce----eecc-CChHHHHHHHHHHhCCCCCccEEEEeCChhHHH
Q 024315 158 ------ENIRRIG------------EVAKLFADAGVIC----IACL-ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 158 ------~~~~~l~------------~~a~~~~~~g~~~----iv~~-~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
+.+.+++ +....+....+.. -+.. +.+.++.-+.+.+++.+|++ +.+|+|++.++
T Consensus 85 ~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL--lILDEPFSGLD 162 (300)
T COG4152 85 PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL--LILDEPFSGLD 162 (300)
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE--EEecCCccCCC
Confidence 2222221 1122233333322 1222 33444555788889999999 99999999999
Q ss_pred hcChhhHHHHHh
Q 024315 215 ARDPKGLYKLAR 226 (269)
Q Consensus 215 ~R~~k~l~~~~r 226 (269)
+-+.+-+.+...
T Consensus 163 PVN~elLk~~I~ 174 (300)
T COG4152 163 PVNVELLKDAIF 174 (300)
T ss_pred hhhHHHHHHHHH
Confidence 988776655544
No 129
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.51 E-value=1.5e-13 Score=118.50 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=96.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-cccCCCCChh----
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKAE---- 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-l~~~~g~~~~---- 154 (269)
.++++.+......+.+++.+.+|++++|+|+||||||||++.|++.+ .+.+|.|.++|.++... .+...+|..+
T Consensus 6 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (207)
T PRK13539 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAM 84 (207)
T ss_pred EeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeCcchhhHhhcEEecCCCcC
Confidence 45666665556788999999999999999999999999999999987 46689999999764310 1111121111
Q ss_pred ----hHHHHHH---HH-----HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 155 ----DRVENIR---RI-----GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 155 ----~~~~~~~---~l-----~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
...+++. .. ......+...++... ....++++++| ..+++++.++++ +++|+|+..++...
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD~~~ 162 (207)
T PRK13539 85 KPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI--WILDEPTAALDAAA 162 (207)
T ss_pred CCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHH
Confidence 0011111 00 112233444444321 22345666666 689999999999 99999999999888
Q ss_pred hhhHHHHHh
Q 024315 218 PKGLYKLAR 226 (269)
Q Consensus 218 ~k~l~~~~r 226 (269)
.+.+.+.++
T Consensus 163 ~~~l~~~l~ 171 (207)
T PRK13539 163 VALFAELIR 171 (207)
T ss_pred HHHHHHHHH
Confidence 888766554
No 130
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.51 E-value=1.1e-13 Score=118.67 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=96.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChhh-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAED- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~~- 155 (269)
.++.+.+......+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++... .++.++|.+++
T Consensus 5 ~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~ 83 (200)
T PRK13540 5 IELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIKKDLCTYQKQLCFVGHRS 83 (200)
T ss_pred EEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccccCHHHHHhheEEecccc
Confidence 34555555556788899999999999999999999999999999987 46789999999876421 11222222111
Q ss_pred -------HHHHHHHH-------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 156 -------RVENIRRI-------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 156 -------~~~~~~~l-------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
-.+++... ......+...++.. .....++++++| ..+++++.++++ +++|+|+..++..
T Consensus 84 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~--lilDEP~~~LD~~ 161 (200)
T PRK13540 84 GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL--WLLDEPLVALDEL 161 (200)
T ss_pred ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCcccCHH
Confidence 11111100 01222223223311 122345566655 699999999999 9999999999999
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
..+.+.+.+++
T Consensus 162 ~~~~l~~~l~~ 172 (200)
T PRK13540 162 SLLTIITKIQE 172 (200)
T ss_pred HHHHHHHHHHH
Confidence 88887766654
No 131
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.51 E-value=1.3e-13 Score=121.20 Aligned_cols=146 Identities=18% Similarity=0.086 Sum_probs=98.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCc----c-cccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH----G-LNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~----~-l~~~~g~~~ 153 (269)
.++.+.+.......++++.+++|++++|+|+||||||||+++|++.++ .+.+|.|.++|.++.. . .+..++|.+
T Consensus 4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (243)
T TIGR01978 4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAF 83 (243)
T ss_pred eeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeee
Confidence 355666655567788999999999999999999999999999999852 4678999999987542 1 111233322
Q ss_pred hhH--------HHHHHH-------------------HHHHHHHHHhCCcc-e----eec-cCChHHHHH-HHHHHhCCCC
Q 024315 154 EDR--------VENIRR-------------------IGEVAKLFADAGVI-C----IAC-LISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 154 ~~~--------~~~~~~-------------------l~~~a~~~~~~g~~-~----iv~-~~~~~~~~r-~~ar~ll~~~ 199 (269)
++. .+.+.. ...+...+...++. . .+. ..++++++| ..+++++.++
T Consensus 84 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p 163 (243)
T TIGR01978 84 QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP 163 (243)
T ss_pred ccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCC
Confidence 221 010000 01122233333442 1 122 256666666 6999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|||+..++....+.+++.+++
T Consensus 164 ~l--lllDEPt~~LD~~~~~~l~~~l~~ 189 (243)
T TIGR01978 164 KL--AILDEIDSGLDIDALKIVAEGINR 189 (243)
T ss_pred CE--EEecCCcccCCHHHHHHHHHHHHH
Confidence 99 999999999999988887766553
No 132
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.6e-13 Score=124.11 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=98.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||++.|++.+.. +.+|.|.++|.++.. .++..+
T Consensus 43 ~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i 122 (285)
T PRK14254 43 RDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRI 122 (285)
T ss_pred EEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccE
Confidence 4566665555677889999999999999999999999999999998853 468999999987631 112222
Q ss_pred CCChhh-------HHHHHHH-----------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 150 SFKAED-------RVENIRR-----------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 150 g~~~~~-------~~~~~~~-----------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+|.+++ ..+++.. ..++...+...++. .-+..+++++++| ..+++++.++++
T Consensus 123 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~l- 201 (285)
T PRK14254 123 GMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEV- 201 (285)
T ss_pred EEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 222221 1111110 01122223333331 1233456666666 699999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHhc
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+++.+++
T Consensus 202 -LLLDEPts~LD~~~~~~l~~~L~~ 225 (285)
T PRK14254 202 -ILMDEPASALDPVATSKIEDLIEE 225 (285)
T ss_pred -EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999888887766654
No 133
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=123.45 Aligned_cols=146 Identities=20% Similarity=0.211 Sum_probs=98.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+++|++++|+|+||||||||++.|+|.+.+ +.+|.|.++|.++.. .++..+
T Consensus 17 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i 96 (260)
T PRK10744 17 RNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV 96 (260)
T ss_pred EEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcce
Confidence 4566666555677889999999999999999999999999999998741 358999999987631 122233
Q ss_pred CCChhhH-------HHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. . .++...+...++ .......++++++| ..+++++.+++
T Consensus 97 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 176 (260)
T PRK10744 97 GMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPE 176 (260)
T ss_pred EEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 3333221 111100 0 112222333332 11233456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 177 l--llLDEPt~~LD~~~~~~l~~~L~~ 201 (260)
T PRK10744 177 V--LLLDEPCSALDPISTGRIEELITE 201 (260)
T ss_pred E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999888887766654
No 134
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=8.5e-14 Score=125.96 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=100.3
Q ss_pred cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccc
Q 024315 80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLN 146 (269)
Q Consensus 80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~ 146 (269)
.++.+.+.. ....+++++++++|++++|+|+||||||||+++|++.+ .+..|.|.++|.++.. .++
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (286)
T PRK13646 6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTVTVDDITITHKTKDKYIRPVR 84 (286)
T ss_pred EEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHHHHH
Confidence 345555532 34778889999999999999999999999999999987 5678999999987642 123
Q ss_pred cCCCCChhhH---------HHHHHH------------HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCC
Q 024315 147 RDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 147 ~~~g~~~~~~---------~~~~~~------------l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
..++|.+|+. .+.+.. ...+...+...++. . .+..+++++++| ..+++++.++
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p 164 (286)
T PRK13646 85 KRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNP 164 (286)
T ss_pred hheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 3455554432 111110 01122333444542 1 234456677666 6899999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++ +++|+|+..++......+.+.++
T Consensus 165 ~i--lllDEPt~~LD~~~~~~l~~~l~ 189 (286)
T PRK13646 165 DI--IVLDEPTAGLDPQSKRQVMRLLK 189 (286)
T ss_pred CE--EEEECCcccCCHHHHHHHHHHHH
Confidence 99 99999999999999888766554
No 135
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.50 E-value=5.7e-14 Score=138.65 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=93.3
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|.|.+ + .+|.|.++|.++.. .+++.++|.+|+- +++
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 457779999999999999999999999999999988 4 58999999988753 2333334333321 111
Q ss_pred H------------HHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 I------------RRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~------------~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+ ....+.+ .... ..|.... ...++++++|| ..+|+++.++++ +.+|||++.+|...
T Consensus 443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I--liLDE~TSaLD~~t 520 (588)
T PRK11174 443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL--LLLDEPTASLDAHS 520 (588)
T ss_pred hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHH
Confidence 1 1111111 1111 1133222 33467888888 799999999999 99999999999999
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+.+.+++
T Consensus 521 e~~i~~~l~~ 530 (588)
T PRK11174 521 EQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHH
Confidence 8887766553
No 136
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.5e-13 Score=121.47 Aligned_cols=146 Identities=16% Similarity=0.194 Sum_probs=99.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--cCCccEEEECCeecCc----ccccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRH----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~~~~g~i~l~g~~~~~----~l~~~~g~~~ 153 (269)
.++.+.+......++.++.+.+|++++|+|+||||||||+++|++.+. .+.+|.|.++|.++.. ..+..++|.+
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 85 (246)
T PRK14269 6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85 (246)
T ss_pred eeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence 456666655567788999999999999999999999999999999874 2568999999987642 1122233322
Q ss_pred hh-------HHHHHHH-------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 154 ED-------RVENIRR-------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 154 ~~-------~~~~~~~-------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
++ ..+++.. . ......+...++. ......++++++| ..+++++.++++
T Consensus 86 q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l-- 163 (246)
T PRK14269 86 QQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKL-- 163 (246)
T ss_pred cCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence 22 1111100 0 0122233344442 1223456666666 689999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+.+.+++
T Consensus 164 llLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 164 LLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999888887766654
No 137
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.50 E-value=9.7e-14 Score=136.57 Aligned_cols=143 Identities=21% Similarity=0.250 Sum_probs=100.4
Q ss_pred ceEEeeCceeec------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCC
Q 024315 81 NILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLS 150 (269)
Q Consensus 81 ~~~~~~~~v~~~------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g 150 (269)
.+++.+..+.+. ++.++++++|+.++|+|+|||||||+++.|.+.+ ++.+|.|++||.+++. .+++.++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 355665555554 5579999999999999999999999999999988 5679999999988874 3444444
Q ss_pred CChhhH-------HH------------HHHHHHHHH---HHHHh--CCcceee----ccCChHHHHH-HHHHHhCCCCCc
Q 024315 151 FKAEDR-------VE------------NIRRIGEVA---KLFAD--AGVICIA----CLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 151 ~~~~~~-------~~------------~~~~l~~~a---~~~~~--~g~~~iv----~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
+.+|+- .+ .+.+..+.+ ..... .|....+ ...+++++|| ..+|+++.++++
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I 486 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486 (567)
T ss_pred EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 444321 11 111111111 11111 1443333 3457788887 799999999999
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHh
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+.+|||+..+|....+.+.+..+
T Consensus 487 --LILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 487 --LILDEATSALDTETEALIQDALK 509 (567)
T ss_pred --EEEeccccccCHHhHHHHHHHHH
Confidence 99999999999999888766654
No 138
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7.5e-14 Score=133.14 Aligned_cols=144 Identities=20% Similarity=0.280 Sum_probs=104.1
Q ss_pred cceEEeeCceeec------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315 80 TNILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~ 149 (269)
..+.|.++++++. ..+|+++++|+-++|+|+|||||||++++|.+++. .+|.|++||.++.. .+|+-+
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhhe
Confidence 3456665555554 45699999999999999999999999999999874 68999999999864 677778
Q ss_pred CCChhhHH-------HHHHH------HHHHHHHHHhC-----------Ccc----eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDRV-------ENIRR------IGEVAKLFADA-----------GVI----CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~~-------~~~~~------l~~~a~~~~~~-----------g~~----~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
|+.||+-. .++.. -.++......+ |.. .-...++++++|| ..+|+++++++
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 88887541 11100 01111111222 221 2234567788887 69999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|||+..++......+.+.+.+
T Consensus 508 I--l~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 508 I--LLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred e--EEecCcccccchhhHHHHHHHHHH
Confidence 9 999999999999888887766654
No 139
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=8.2e-14 Score=122.34 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=94.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++.+.+......+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++... .+..++|.++
T Consensus 9 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 87 (237)
T PRK11614 9 DKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGRIVFDGKDITDWQTAKIMREAVAIVPE 87 (237)
T ss_pred EeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEecCCCCHHHHHHhCEEEecc
Confidence 45666655555778889999999999999999999999999999988 46689999999875320 1112222221
Q ss_pred hH--------HHHH-------------HHHHHHHHHHHhC--CcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 155 DR--------VENI-------------RRIGEVAKLFADA--GVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 155 ~~--------~~~~-------------~~l~~~a~~~~~~--g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
+. .+++ ..+......+... .........++++++| ..+++++.++++ +++|+|+
T Consensus 88 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i--lllDEPt 165 (237)
T PRK11614 88 GRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL--LLLDEPS 165 (237)
T ss_pred CcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--EEEcCcc
Confidence 10 0111 0011111111000 0111233456666666 689999999999 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..++....+.+++.++
T Consensus 166 ~~LD~~~~~~l~~~l~ 181 (237)
T PRK11614 166 LGLAPIIIQQIFDTIE 181 (237)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999998888776654
No 140
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=123.26 Aligned_cols=144 Identities=20% Similarity=0.242 Sum_probs=98.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++.+.+......+++++.+++|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++.. .++..++|.+++
T Consensus 11 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 89 (265)
T PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGEHIQHYASKEVARRIGLLAQN 89 (265)
T ss_pred EEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEEhhhCCHHHHhhheEEeecc
Confidence 566777766667889999999999999999999999999999999884 668999999987532 111122222221
Q ss_pred H--------HHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 156 R--------VENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 156 ~--------~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 90 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l--lll 167 (265)
T PRK10253 90 ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI--MLL 167 (265)
T ss_pred CcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE--EEE
Confidence 0 011100 001122233334322 233456666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|+..++....+.+++.++
T Consensus 168 DEPt~gLD~~~~~~l~~~L~ 187 (265)
T PRK10253 168 DEPTTWLDISHQIDLLELLS 187 (265)
T ss_pred eCccccCCHHHHHHHHHHHH
Confidence 99999999998888776654
No 141
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.50 E-value=3.7e-14 Score=142.96 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=99.6
Q ss_pred ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
+++|.+.+ ....++.++++++|+.++|+|+||||||||++.|+|.+ +|.+|.|.+||.++.. .+++.+++.+|
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 44444432 23456779999999999999999999999999999988 5779999999988753 33444444444
Q ss_pred hH-------HHHHH------------HHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 155 DR-------VENIR------------RIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 155 ~~-------~~~~~------------~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
+. ++++. ...+.+ .... ..|.... ....+++++|| ..+|+++.++++ ++
T Consensus 561 ~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i--li 638 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI--LI 638 (710)
T ss_pred CChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE--EE
Confidence 32 11111 111111 1111 1133222 23457788877 699999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHhc
Q 024315 206 MDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+|||++.+|....+.+++..+.
T Consensus 639 LDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 639 LDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred EECccccCCHHHHHHHHHHHHh
Confidence 9999999999999988877765
No 142
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.50 E-value=1.7e-13 Score=119.31 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=96.2
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-----
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED----- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~----- 155 (269)
++.+.+......+..++.+.+|++++|+|+||||||||++.|+|.+ ++.+|.+.++|.++...-...+++.+++
T Consensus 5 ~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~ 83 (223)
T TIGR03740 5 NLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYE 83 (223)
T ss_pred eEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCCCccc
Confidence 4555555555678889999999999999999999999999999988 4668999999976532111112222111
Q ss_pred ---HHHHHHH---H-----HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315 156 ---RVENIRR---I-----GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (269)
Q Consensus 156 ---~~~~~~~---l-----~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k 219 (269)
..+++.. . ......+...++... +...++++++| ..+++++.++++ +++|+|+..++....+
T Consensus 84 ~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l--lllDEP~~~LD~~~~~ 161 (223)
T TIGR03740 84 NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL--LILDEPTNGLDPIGIQ 161 (223)
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCccCCCHHHHH
Confidence 1111110 0 122233334444321 23346666666 689999999999 9999999999999888
Q ss_pred hHHHHHh
Q 024315 220 GLYKLAR 226 (269)
Q Consensus 220 ~l~~~~r 226 (269)
.+.+.++
T Consensus 162 ~l~~~L~ 168 (223)
T TIGR03740 162 ELRELIR 168 (223)
T ss_pred HHHHHHH
Confidence 8776654
No 143
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.9e-13 Score=114.76 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=91.0
Q ss_pred ceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-ccccCC--------
Q 024315 81 NILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDL-------- 149 (269)
Q Consensus 81 ~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-~l~~~~-------- 149 (269)
++..++. ++++.+++|+.+.+|++++++||||||||||++.++++. .|..|.|.+++..+.. +..+..
T Consensus 8 ~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i~l~~r~i~gPgaergvVFQ~~~Ll 86 (259)
T COG4525 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSIQLNGRRIEGPGAERGVVFQNEALL 86 (259)
T ss_pred heEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceEEECCEeccCCCccceeEeccCccc
Confidence 3444443 455889999999999999999999999999999999988 5779999999987652 111110
Q ss_pred ----------------CCChhhHHHHHHHHHHHHHH--HHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 150 ----------------SFKAEDRVENIRRIGEVAKL--FADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 150 ----------------g~~~~~~~~~~~~l~~~a~~--~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
|+...+|++.. .+.... ++++.-..++ ..+++.+|| -++|++..+|++ +++|+|+
T Consensus 87 PWl~~~dNvafgL~l~Gi~k~~R~~~a---~q~l~~VgL~~~~~~~i~-qLSGGmrQRvGiARALa~eP~~--LlLDEPf 160 (259)
T COG4525 87 PWLNVIDNVAFGLQLRGIEKAQRREIA---HQMLALVGLEGAEHKYIW-QLSGGMRQRVGIARALAVEPQL--LLLDEPF 160 (259)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHHhCcccccccceE-eecchHHHHHHHHHHhhcCcce--EeecCch
Confidence 12222222111 111111 1222222233 445556666 599999999999 9999999
Q ss_pred hHHHhcChhhHH
Q 024315 211 QVCEARDPKGLY 222 (269)
Q Consensus 211 ~~l~~R~~k~l~ 222 (269)
..++.-.++.+.
T Consensus 161 gAlDa~tRe~mQ 172 (259)
T COG4525 161 GALDALTREQMQ 172 (259)
T ss_pred hhHHHHHHHHHH
Confidence 999987776644
No 144
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.50 E-value=1.6e-13 Score=120.72 Aligned_cols=145 Identities=14% Similarity=0.207 Sum_probs=98.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.++ +.+|.+.++|.++... .+..++|.++
T Consensus 6 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 84 (242)
T TIGR03411 6 EGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQ 84 (242)
T ss_pred EeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEecc
Confidence 355555555567888999999999999999999999999999999874 6689999999876320 1112232222
Q ss_pred hH--------HHHHHH--------------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCc
Q 024315 155 DR--------VENIRR--------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 155 ~~--------~~~~~~--------------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
+. .+++.. -..+...+...++.. .+...++++++| ..+++++.++++
T Consensus 85 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~ 164 (242)
T TIGR03411 85 KPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKL 164 (242)
T ss_pred ccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11 111110 011222333334422 223346666666 689999999999
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+++.+++
T Consensus 165 --lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 165 --LLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred --EEecCCccCCCHHHHHHHHHHHHH
Confidence 999999999999988887766553
No 145
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.50 E-value=6e-14 Score=130.98 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=96.5
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----cc----ccCCCCChhh----
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GL----NRDLSFKAED---- 155 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l----~~~~g~~~~~---- 155 (269)
.....++++|.+.+|++++|+|+||||||||+++|+|++ ++.+|.|+++|.++.. .+ +..++|..|.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 445678889999999999999999999999999999988 5679999999988753 11 2233333221
Q ss_pred ----HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 156 ----RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 156 ----~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
..+++.. ...+...+...++.. .+..+++++++| ..+++++.++++ +++|+|+..++
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i--LLlDEP~saLD 161 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI--LLMDEAFSALD 161 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCC
Confidence 1121111 112223344444422 234457777777 699999999999 99999999999
Q ss_pred hcChhhHHHHHh
Q 024315 215 ARDPKGLYKLAR 226 (269)
Q Consensus 215 ~R~~k~l~~~~r 226 (269)
...++.+++.++
T Consensus 162 ~~~r~~l~~~l~ 173 (363)
T TIGR01186 162 PLIRDSMQDELK 173 (363)
T ss_pred HHHHHHHHHHHH
Confidence 998888776544
No 146
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.4e-13 Score=109.98 Aligned_cols=153 Identities=25% Similarity=0.339 Sum_probs=119.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHHHHHHHHHHHHHHHHhCCcce
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC 177 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~ 177 (269)
-++.++|.+||||||++++|...|.-+ +++||++.. -+.+++.+++++|..|+..+......-...+-.+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~-----F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~v 87 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLK-----FIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGV 87 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCc-----ccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeE
Confidence 378899999999999999999998644 899999874 3456778999999999888766555444467778
Q ss_pred eeccCChHHHHHHHHHHhCC--------CCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccc---cccCCCCCC
Q 024315 178 IACLISPYRKDRDACRSMLP--------EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID---DPYEPPLNC 246 (269)
Q Consensus 178 iv~~~~~~~~~r~~ar~ll~--------~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~---~~~e~p~~~ 246 (269)
++++++..++.|++++..+. +..+..+++..+.+++..|. .-|.|+++....+. +..|+|+.+
T Consensus 88 VlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl------~~R~gHFMp~~lleSQf~~LE~p~~~ 161 (191)
T KOG3354|consen 88 VLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRL------KKRKGHFMPADLLESQFATLEAPDAD 161 (191)
T ss_pred EEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHH------hhcccccCCHHHHHHHHHhccCCCCC
Confidence 88999999999999998655 22455589999999999887 66788888865555 556788877
Q ss_pred C---eEEEcCCCcCHHHHHH-HHhh
Q 024315 247 E---VGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 247 e---~~id~~~~~~~~~~~~-i~~~ 267 (269)
| +.|+.+ ..+++++.. |.|-
T Consensus 162 e~div~isv~-~~~~e~iv~tI~k~ 185 (191)
T KOG3354|consen 162 EEDIVTISVK-TYSVEEIVDTIVKM 185 (191)
T ss_pred ccceEEEeec-cCCHHHHHHHHHHH
Confidence 6 567764 477888877 6553
No 147
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.50 E-value=1.2e-13 Score=122.48 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=97.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----------------
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---------------- 143 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---------------- 143 (269)
.++.+.+......+++++++++|++++|+|+||||||||++.|++.+ .+.+|.+.++|.++..
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~ 82 (252)
T TIGR03005 4 SDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82 (252)
T ss_pred EEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccccccchhHH
Confidence 34555555556778899999999999999999999999999999987 4668999999987631
Q ss_pred -ccccCCCCChhh--------HHHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC
Q 024315 144 -GLNRDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML 196 (269)
Q Consensus 144 -~l~~~~g~~~~~--------~~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll 196 (269)
.++..+++..++ ..+++.. ...+...+...++.. .....++++++| ..+++++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 162 (252)
T TIGR03005 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA 162 (252)
T ss_pred HHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHH
Confidence 112222222221 0111110 011222333344422 223346666666 6899999
Q ss_pred CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.++++ +++|+|+..++......+++.+++
T Consensus 163 ~~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 191 (252)
T TIGR03005 163 MRPKV--MLFDEVTSALDPELVGEVLNVIRR 191 (252)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 99998 999999999999888877766553
No 148
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=1e-13 Score=124.36 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=98.9
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----cc----ccCCCCC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GL----NRDLSFK 152 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l----~~~~g~~ 152 (269)
++...+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++.. .+ ...++|.
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v 107 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKISMV 107 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccChhhhhhhhcCcEEEE
Confidence 5555566677788999999999999999999999999999999988 4668999999977532 00 1122322
Q ss_pred hhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 153 AEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 153 ~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
+++. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 108 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i--llLD 185 (269)
T cd03294 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI--LLMD 185 (269)
T ss_pred ecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEc
Confidence 2211 111110 011223334444422 233456677776 699999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
||+..++....+.+++.++
T Consensus 186 EPt~~LD~~~~~~l~~~l~ 204 (269)
T cd03294 186 EAFSALDPLIRREMQDELL 204 (269)
T ss_pred CCCccCCHHHHHHHHHHHH
Confidence 9999999998888776654
No 149
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=1.3e-13 Score=124.11 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=99.0
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
.++++.+. .....+++++.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. .++..++|..+
T Consensus 8 ~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 86 (274)
T PRK13647 8 EDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRVKVMGREVNAENEKWVRSKVGLVFQ 86 (274)
T ss_pred EEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHhhEEEEec
Confidence 45666553 345778889999999999999999999999999999988 4678999999987642 12233444443
Q ss_pred hH---------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 155 DR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 155 ~~---------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
+. .+++.. . ..+...+...++.. .+...++++++| ..+++++.++++ +++|+
T Consensus 87 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l--lllDE 164 (274)
T PRK13647 87 DPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV--IVLDE 164 (274)
T ss_pred ChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence 32 011110 0 11222333334422 233456666666 699999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++....+.+.+.++
T Consensus 165 Pt~~LD~~~~~~l~~~l~ 182 (274)
T PRK13647 165 PMAYLDPRGQETLMEILD 182 (274)
T ss_pred CCcCCCHHHHHHHHHHHH
Confidence 999999998887665554
No 150
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.49 E-value=1.5e-13 Score=119.47 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=96.8
Q ss_pred ceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCC
Q 024315 81 NILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDL 149 (269)
Q Consensus 81 ~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~ 149 (269)
++.+.+.. ....+.+++++++|++++|+|+||||||||++.|++.+ ++.+|.|.++|.++.. ..+..+
T Consensus 6 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (220)
T TIGR02982 6 NLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELYGASEKELVQLRRNI 84 (220)
T ss_pred EEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEhHhcCHhHHHHHHhhe
Confidence 45554432 56788899999999999999999999999999999987 4678999999987642 011223
Q ss_pred CCChhhH--------HHHHH---H----------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 150 SFKAEDR--------VENIR---R----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 150 g~~~~~~--------~~~~~---~----------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
+|.+++. .+++. . .......+...++.. .+...++++++| ..+++++.++++
T Consensus 85 ~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i-- 162 (220)
T TIGR02982 85 GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL-- 162 (220)
T ss_pred EEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence 3322221 01110 0 011223333344422 233456666666 688999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|+|+..++....+.+++.++
T Consensus 163 lllDEP~~~LD~~~~~~l~~~l~ 185 (220)
T TIGR02982 163 VLADEPTAALDSKSGRDVVELMQ 185 (220)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHH
Confidence 99999999999998888776654
No 151
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.9e-13 Score=126.07 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc---CCccEEEECCeecCcc-------c-ccCCCCChhhH-
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG-------L-NRDLSFKAEDR- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~---~~~g~i~l~g~~~~~~-------l-~~~~g~~~~~~- 156 (269)
+.+.+++||.+++|++++|+|+||||||||+++|++++.+ +.+|.|.++|.++... + ++.++|.+|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5688999999999999999999999999999999998853 2579999999886421 1 11233333321
Q ss_pred -------------HHHHHH---------HHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 157 -------------VENIRR---------IGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 157 -------------~~~~~~---------l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.+.+.. ...+...+...++.. ....+++++++| .++++++.++++ +++
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~l--lil 177 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKL--LIA 177 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCE--EEE
Confidence 111110 011233444555531 233457777777 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++...+..+.+.++
T Consensus 178 DEPts~LD~~~~~~il~lL~ 197 (326)
T PRK11022 178 DEPTTALDVTIQAQIIELLL 197 (326)
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999988877665443
No 152
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.49 E-value=9.3e-14 Score=123.65 Aligned_cols=144 Identities=22% Similarity=0.169 Sum_probs=97.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-----cCcc--------cc
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHG--------LN 146 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-----~~~~--------l~ 146 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||++.|++.+ .+.+|.|.++|.+ +... .+
T Consensus 10 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~ 88 (258)
T PRK11701 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEVHYRMRDGQLRDLYALSEAERRRLLR 88 (258)
T ss_pred eeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCccccccccccCCHHHHHHHhh
Confidence 45666655555678889999999999999999999999999999988 4668999999976 4210 11
Q ss_pred cCCCCChhhHH----------HHH------------HHH-HHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCC
Q 024315 147 RDLSFKAEDRV----------ENI------------RRI-GEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLP 197 (269)
Q Consensus 147 ~~~g~~~~~~~----------~~~------------~~l-~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~ 197 (269)
..++|.+++.. +.+ ... ......+...++. ..+...++++++| ..+++++.
T Consensus 89 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~ 168 (258)
T PRK11701 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred cceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhc
Confidence 22333332210 000 000 1112223333432 1234456677766 68999999
Q ss_pred CCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 198 ~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++++ +++|+|+..++....+.+.+.++
T Consensus 169 ~p~l--lllDEPt~~LD~~~~~~l~~~l~ 195 (258)
T PRK11701 169 HPRL--VFMDEPTGGLDVSVQARLLDLLR 195 (258)
T ss_pred CCCE--EEEcCCcccCCHHHHHHHHHHHH
Confidence 9999 99999999999988888776654
No 153
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.49 E-value=5.3e-14 Score=139.05 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=93.8
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|.|.+ +|.+|.|.+||.++.. .+++.++|.+|+. +++
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N 434 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence 456779999999999999999999999999999988 5678999999988753 3334444444321 111
Q ss_pred HHHH-----HHHHHHHHhC-----------Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 160 IRRI-----GEVAKLFADA-----------GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 160 ~~~l-----~~~a~~~~~~-----------g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
+..- .++....... |+.. .....+++++|| ..+|+++.++++ +.+|||+..+|....
T Consensus 435 I~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i--lllDEpts~LD~~t~ 512 (592)
T PRK10790 435 VTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI--LILDEATANIDSGTE 512 (592)
T ss_pred HHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHHHH
Confidence 1100 0111111111 2221 223457778777 799999999999 999999999999998
Q ss_pred hhHHHHHhc
Q 024315 219 KGLYKLARE 227 (269)
Q Consensus 219 k~l~~~~r~ 227 (269)
+.+++.+++
T Consensus 513 ~~i~~~l~~ 521 (592)
T PRK10790 513 QAIQQALAA 521 (592)
T ss_pred HHHHHHHHH
Confidence 887766653
No 154
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.49 E-value=2.2e-13 Score=116.35 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=91.3
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-----
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED----- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~----- 155 (269)
++++.+......+ +++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++...-....+|.+++
T Consensus 6 ~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~ 83 (195)
T PRK13541 6 QLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKL 83 (195)
T ss_pred EeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccChhhhhhEEeccCCcCCCc
Confidence 4444443333334 89999999999999999999999999999987 4678999999977532100111111110
Q ss_pred ---HHHHHHH---H----HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315 156 ---RVENIRR---I----GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 156 ---~~~~~~~---l----~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
-.+++.. . ..+...+...++.. .+...++++++| ..+++++.++++ +++|+|+..++....+.
T Consensus 84 ~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~--lllDEP~~~LD~~~~~~ 161 (195)
T PRK13541 84 EMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL--WLLDEVETNLSKENRDL 161 (195)
T ss_pred cCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHH
Confidence 0111110 0 11222223333321 233345566665 689999999999 99999999999988877
Q ss_pred HHHHHh
Q 024315 221 LYKLAR 226 (269)
Q Consensus 221 l~~~~r 226 (269)
+.+.++
T Consensus 162 l~~~l~ 167 (195)
T PRK13541 162 LNNLIV 167 (195)
T ss_pred HHHHHH
Confidence 776654
No 155
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.49 E-value=4.6e-13 Score=113.08 Aligned_cols=149 Identities=21% Similarity=0.307 Sum_probs=93.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHH---h
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFA---D 172 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~---~ 172 (269)
+|++++|+|+|||||||+++.|++++.. +.++|+++... ...++++..+++..+...+......+. .
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE 76 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999998853 48899886531 123445555554445555444443331 2
Q ss_pred CCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCCCC--
Q 024315 173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLNCE-- 247 (269)
Q Consensus 173 ~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~~e-- 247 (269)
.|+ ++ ++...+..|+.+++... +|..||+++|.+.+.+|..++ .++... +..+...||+|+..|
T Consensus 77 ~g~--iv-~s~~~~~~R~~~r~~~~--~~~~v~l~a~~~~l~~Rl~~R------~~~~~~~~vl~~Q~~~~e~~~~~e~~ 145 (176)
T PRK09825 77 TGF--IV-CSSLKKQYRDILRKSSP--NVHFLWLDGDYETILARMQRR------AGHFMPPDLLQSQFDALERPCADEHD 145 (176)
T ss_pred CEE--EE-EEecCHHHHHHHHhhCC--CEEEEEEeCCHHHHHHHHhcc------cCCCCCHHHHHHHHHHcCCCCCCcCC
Confidence 233 23 44445566777766543 467799999999999998554 233222 334445567775533
Q ss_pred -eEEEcCCCcCHHHHHH-HHhh
Q 024315 248 -VGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 248 -~~id~~~~~~~~~~~~-i~~~ 267 (269)
+.||++ .+++++.. +..+
T Consensus 146 ~~~~d~~--~~~~~~~~~~~~~ 165 (176)
T PRK09825 146 IARIDVN--HDIENVTEQCRQA 165 (176)
T ss_pred eEEEECC--CCHHHHHHHHHHH
Confidence 678874 44444433 4444
No 156
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.4e-13 Score=122.25 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=97.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++++++|++++|+|+||||||||+++|++.+++ +.+|.|.++|.++.. ..+..+
T Consensus 11 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 90 (254)
T PRK14273 11 ENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKI 90 (254)
T ss_pred eeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhce
Confidence 4566666555567889999999999999999999999999999998864 247999999977531 112223
Q ss_pred CCChhhH-------HHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. . ..+...+...++ .......++++++| ..+++++.+++
T Consensus 91 ~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 170 (254)
T PRK14273 91 GMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPN 170 (254)
T ss_pred EEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3332221 111100 0 011112222222 11233456677766 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|||+..++......+.+.+++
T Consensus 171 l--llLDEPt~~LD~~~~~~l~~~l~~ 195 (254)
T PRK14273 171 V--ILMDEPTSALDPISTGKIEELIIN 195 (254)
T ss_pred E--EEEeCCCcccCHHHHHHHHHHHHH
Confidence 9 999999999999988887766554
No 157
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.49 E-value=1.3e-13 Score=123.55 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=97.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~ 152 (269)
.++++.+......+++++++.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++.. .++..++|.
T Consensus 11 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v 89 (269)
T PRK11831 11 RGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRKRMSML 89 (269)
T ss_pred eCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhhcEEEE
Confidence 456666655667788999999999999999999999999999999884 668999999976531 011222222
Q ss_pred hhh--------HHHHHHH----H---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 153 AED--------RVENIRR----I---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 153 ~~~--------~~~~~~~----l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+++ ..+++.. . ..+...+...++.. .+..+++++++| ..+++++.++++ +++
T Consensus 90 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llL 167 (269)
T PRK11831 90 FQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL--IMF 167 (269)
T ss_pred ecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 221 1111110 0 01112233344422 123456677776 688999999998 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++....+.+.+.++
T Consensus 168 DEPt~~LD~~~~~~l~~~l~ 187 (269)
T PRK11831 168 DEPFVGQDPITMGVLVKLIS 187 (269)
T ss_pred cCCCccCCHHHHHHHHHHHH
Confidence 99999999998887766554
No 158
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.7e-13 Score=123.63 Aligned_cols=144 Identities=16% Similarity=0.190 Sum_probs=98.6
Q ss_pred cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315 80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~ 152 (269)
.++++.+.. ....+++++++++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. .++..++|.
T Consensus 8 ~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (279)
T PRK13650 8 KNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQIIIDGDLLTEENVWDIRHKIGMV 86 (279)
T ss_pred EeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHHhhceEE
Confidence 455555532 34678899999999999999999999999999999988 4678999999988742 122334444
Q ss_pred hhhH---------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 153 AEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 153 ~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.++. .+.+.. . ..+...+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l--LlL 164 (279)
T PRK13650 87 FQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI--IIL 164 (279)
T ss_pred EcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 4332 111110 0 01122333334422 233456666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|+..++....+.+.+.++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~ 184 (279)
T PRK13650 165 DEATSMLDPEGRLELIKTIK 184 (279)
T ss_pred ECCcccCCHHHHHHHHHHHH
Confidence 99999999988887665544
No 159
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.49 E-value=5.4e-13 Score=114.13 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=96.3
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChhh--
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAED-- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~~-- 155 (269)
++++.+......+.+++.+.+|++++|+|+||||||||++.|++.+ .+.+|.+.++|.++... .+..++|.+++
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~ 83 (198)
T TIGR01189 5 NLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALAEQRDEPHRNILYLGHLPG 83 (198)
T ss_pred EEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccchHHhhhheEEeccCcc
Confidence 4555555566788999999999999999999999999999999987 46689999999875321 11122222211
Q ss_pred ------HHHHHHH---H-----HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 156 ------RVENIRR---I-----GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 156 ------~~~~~~~---l-----~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
..+++.. . ......+...++.. .+...++++++| ..+++++.++++ +++|+|+..++..
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~LD~~ 161 (198)
T TIGR01189 84 LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL--WILDEPTTALDKA 161 (198)
T ss_pred cccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHH
Confidence 1111111 0 01222333334422 123345666666 689999999999 9999999999988
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
..+.+.+.+++
T Consensus 162 ~~~~l~~~l~~ 172 (198)
T TIGR01189 162 GVALLAGLLRA 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 87777666553
No 160
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.49 E-value=1.8e-13 Score=119.37 Aligned_cols=144 Identities=20% Similarity=0.197 Sum_probs=95.8
Q ss_pred cceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------c-cc
Q 024315 80 TNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L-NR 147 (269)
Q Consensus 80 ~~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l-~~ 147 (269)
.++.+.+.. ....+.+++.+++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++... . +.
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 88 (228)
T PRK10584 10 HHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQPLHQMDEEARAKLRAK 88 (228)
T ss_pred eeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeeEEECCEEcccCCHHHHHHHHhh
Confidence 345555432 24678889999999999999999999999999999987 46689999999765320 0 11
Q ss_pred CCCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 148 DLSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 148 ~~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
.++|.+++. .+++.. ..++...+...++.. .+...++++++| ..+++++.++++
T Consensus 89 ~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l- 167 (228)
T PRK10584 89 HVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV- 167 (228)
T ss_pred eEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 222222110 111100 011222333444422 233456666666 689999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHh
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|+|+..++....+.+.+.++
T Consensus 168 -lllDEPt~~LD~~~~~~l~~~l~ 190 (228)
T PRK10584 168 -LFADEPTGNLDRQTGDKIADLLF 190 (228)
T ss_pred -EEEeCCCCCCCHHHHHHHHHHHH
Confidence 99999999999988887776654
No 161
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=2.4e-13 Score=120.55 Aligned_cols=144 Identities=16% Similarity=0.211 Sum_probs=98.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+ ++.+|.|.++|.++... .+..++|.++
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 87 (255)
T PRK11300 9 SGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGTILLRGQHIEGLPGHQIARMGVVRTFQ 87 (255)
T ss_pred eeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcceEEECCEECCCCCHHHHHhcCeEEecc
Confidence 46666666667788999999999999999999999999999999988 46689999999876420 0111222221
Q ss_pred h--------HHHHHHH---------------------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHH
Q 024315 155 D--------RVENIRR---------------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRS 194 (269)
Q Consensus 155 ~--------~~~~~~~---------------------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ 194 (269)
+ ..+++.. .......+...++.. .+...++++++| ..+++
T Consensus 88 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 167 (255)
T PRK11300 88 HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARC 167 (255)
T ss_pred CcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHH
Confidence 1 1111110 001122233334422 123346666666 68999
Q ss_pred hCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 195 ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++.++++ +++|+|+..++...++.+.+.+.
T Consensus 168 l~~~p~l--lllDEPt~~LD~~~~~~l~~~L~ 197 (255)
T PRK11300 168 MVTQPEI--LMLDEPAAGLNPKETKELDELIA 197 (255)
T ss_pred HhcCCCE--EEEcCCccCCCHHHHHHHHHHHH
Confidence 9999999 99999999999998888776654
No 162
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.2e-13 Score=124.50 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=99.3
Q ss_pred cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315 80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~ 153 (269)
.++++.+.. ....+++++++++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. .++..++|..
T Consensus 9 ~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 87 (279)
T PRK13635 9 EHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGTITVGGMVLSEETVWDVRRQVGMVF 87 (279)
T ss_pred EEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHhhheEEEE
Confidence 455555532 34678889999999999999999999999999999988 4678999999988642 1222334443
Q ss_pred hhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 154 EDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 154 ~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
++. .+++.. ...+...+...++.. .....++++++| ..+++++.++++ +++|
T Consensus 88 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLD 165 (279)
T PRK13635 88 QNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI--IILD 165 (279)
T ss_pred eCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence 322 111110 001222333334422 233456666666 699999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
+|+..++....+.+.+.++
T Consensus 166 EPt~gLD~~~~~~l~~~l~ 184 (279)
T PRK13635 166 EATSMLDPRGRREVLETVR 184 (279)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999999998888776655
No 163
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.3e-13 Score=123.77 Aligned_cols=145 Identities=15% Similarity=0.191 Sum_probs=99.0
Q ss_pred cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315 80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~ 153 (269)
.++++.+. .....+++++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++.. .++..++|.+
T Consensus 11 ~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~ 89 (271)
T PRK13632 11 ENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQSGEIKIDGITISKENLKEIRKKIGIIF 89 (271)
T ss_pred EeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEecCcCCHHHHhcceEEEE
Confidence 35555542 344678889999999999999999999999999999988 4678999999987642 2233445544
Q ss_pred hhHH---------HHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 154 EDRV---------ENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 154 ~~~~---------~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
++.. +++.. . ..+..++...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 90 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--llLD 167 (271)
T PRK13632 90 QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI--IIFD 167 (271)
T ss_pred eCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence 4321 11110 0 01122233334422 233456666666 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHhc
Q 024315 208 VPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r~ 227 (269)
+|+..++....+.+++.+++
T Consensus 168 EP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 168 ESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999988887766553
No 164
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.49 E-value=1.5e-13 Score=122.20 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=99.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----------------
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---------------- 143 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---------------- 143 (269)
.++.+.+......+.+++.+++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++..
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 87 (257)
T PRK10619 9 IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVADKNQL 87 (257)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccccchHH
Confidence 456666656667888999999999999999999999999999999884 668999999976531
Q ss_pred -ccccCCCCChhh--------HHHHHHH-------------HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHh
Q 024315 144 -GLNRDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSM 195 (269)
Q Consensus 144 -~l~~~~g~~~~~--------~~~~~~~-------------l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~l 195 (269)
..+..++|.+++ -.+++.. -.+....+...++.. .....++++++| ..++++
T Consensus 88 ~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral 167 (257)
T PRK10619 88 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 167 (257)
T ss_pred HHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 112223332211 1111110 011223344444422 123456666666 689999
Q ss_pred CCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 196 l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+.++++ +++|+|+..++....+.+.+.++
T Consensus 168 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~ 196 (257)
T PRK10619 168 AMEPEV--LLFDEPTSALDPELVGEVLRIMQ 196 (257)
T ss_pred hcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 999999 99999999999998888776544
No 165
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=9.7e-14 Score=125.40 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=99.5
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCC
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~ 152 (269)
.++++.+. .....+++++.+++|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++.. .++..++|.
T Consensus 9 ~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v 87 (283)
T PRK13636 9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSSGRILFDGKPIDYSRKGLMKLRESVGMV 87 (283)
T ss_pred EeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCEECCCCcchHHHHHhhEEEE
Confidence 46666664 355778899999999999999999999999999999988 4678999999987631 122334443
Q ss_pred hhhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 153 AEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 153 ~~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+++. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 88 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l--Lil 165 (283)
T PRK13636 88 FQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV--LVL 165 (283)
T ss_pred ecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 3321 111110 011222333444422 234456666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|+..++......+.+.++
T Consensus 166 DEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 166 DEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred eCCccCCCHHHHHHHHHHHH
Confidence 99999999988877665543
No 166
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.49 E-value=6.4e-14 Score=138.15 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=94.4
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|+|.+ ++.+|.|.++|.+++. .++..+++.+|+. +++
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN 433 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence 456678999999999999999999999999999988 5779999999988763 2333344444332 122
Q ss_pred HHHH------HHHHHHHHhCCc----------ce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 160 IRRI------GEVAKLFADAGV----------IC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 160 ~~~l------~~~a~~~~~~g~----------~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
+..- .++...+...++ .. -....++++++| ..+|+++.++++ +.+|||++.+|....
T Consensus 434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i--lilDE~ts~lD~~t~ 511 (574)
T PRK11160 434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL--LLLDEPTEGLDAETE 511 (574)
T ss_pred hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHH
Confidence 1100 011112222222 11 123357777777 699999999999 999999999999998
Q ss_pred hhHHHHHhc
Q 024315 219 KGLYKLARE 227 (269)
Q Consensus 219 k~l~~~~r~ 227 (269)
+.+.+.+++
T Consensus 512 ~~i~~~l~~ 520 (574)
T PRK11160 512 RQILELLAE 520 (574)
T ss_pred HHHHHHHHH
Confidence 888766654
No 167
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.49 E-value=2e-13 Score=113.96 Aligned_cols=121 Identities=23% Similarity=0.215 Sum_probs=85.7
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKL 169 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~ 169 (269)
...+..++++++|++++|+|+||||||||++.|++.+ .+.+|.+.+++... ++|.+++..-.-..+.+...
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~-------i~~~~q~~~~~~~tv~~nl~- 85 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIGMPEGED-------LLFLPQRPYLPLGTLREQLI- 85 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCCce-------EEEECCCCccccccHHHHhh-
Confidence 4567889999999999999999999999999999987 46689999987421 23333322100000111100
Q ss_pred HHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 170 FADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 170 ~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
. . .....++++++| ..+++++.++++ +++|||+..++....+.+.+.+++
T Consensus 86 --~-~---~~~~LS~G~~~rv~laral~~~p~~--lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 86 --Y-P---WDDVLSGGEQQRLAFARLLLHKPKF--VFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred --c-c---CCCCCCHHHHHHHHHHHHHHcCCCE--EEEECCccccCHHHHHHHHHHHHH
Confidence 0 0 123455666666 699999999999 999999999999888888777664
No 168
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=2e-13 Score=121.08 Aligned_cols=146 Identities=20% Similarity=0.172 Sum_probs=98.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++.. .++..+
T Consensus 8 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 87 (253)
T PRK14267 8 VNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREV 87 (253)
T ss_pred EeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhce
Confidence 4566666555678899999999999999999999999999999998854 248999999987631 112223
Q ss_pred CCChhhH--------HHHHHH-------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCC
Q 024315 150 SFKAEDR--------VENIRR-------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPE 198 (269)
Q Consensus 150 g~~~~~~--------~~~~~~-------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~ 198 (269)
+|.+++. .+++.. . ..+...+...++. ..+...++++++| ..+++++.+
T Consensus 88 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 167 (253)
T PRK14267 88 GMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMK 167 (253)
T ss_pred eEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcC
Confidence 3322211 111110 0 0112223333331 1233456666666 689999999
Q ss_pred CCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++ +++|+|+..++....+.+++.+++
T Consensus 168 p~l--lllDEP~~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14267 168 PKI--LLMDEPTANIDPVGTAKIEELLFE 194 (253)
T ss_pred CCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 999 999999999999888887766554
No 169
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=2.3e-13 Score=121.68 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=96.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++.+.+......+.++|.+.+|++++|+|+||||||||+++|+|.+ ++.+|.|.++|.++.. .++..++|.+++
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 93 (265)
T PRK10575 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGEILLDAQPLESWSSKAFARKVAYLPQQ 93 (265)
T ss_pred eeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEehhhCCHHHHhhheEEeccC
Confidence 45666665556788899999999999999999999999999999987 4668999999977531 111112222111
Q ss_pred --------HHHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 156 --------RVENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 156 --------~~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
..+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--llL 171 (265)
T PRK10575 94 LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC--LLL 171 (265)
T ss_pred CCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 1111110 011222333334322 233456666666 689999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|+..++....+.+++.++
T Consensus 172 DEPt~~LD~~~~~~~~~~l~ 191 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVH 191 (265)
T ss_pred cCCcccCCHHHHHHHHHHHH
Confidence 99999999998877665554
No 170
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2e-13 Score=122.22 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=98.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++++.+|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++.. .++..+
T Consensus 24 ~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 103 (267)
T PRK14237 24 KDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHI 103 (267)
T ss_pred eeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcce
Confidence 4566665556677889999999999999999999999999999998853 468999999987631 112233
Q ss_pred CCChhh-------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+++.. . ..+...+...++. ..+...++++++| ..+++++.+++
T Consensus 104 ~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~ 183 (267)
T PRK14237 104 GMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPD 183 (267)
T ss_pred EEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 333332 1111111 0 0111222233321 1123345666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+.+.+++
T Consensus 184 l--llLDEPt~~LD~~~~~~l~~~l~~ 208 (267)
T PRK14237 184 I--LLMDEPASALDPISTMQLEETMFE 208 (267)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 9 999999999999988887766554
No 171
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.4e-13 Score=124.19 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=99.3
Q ss_pred cceEEeeCc------eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccC
Q 024315 80 TNILWHKNS------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRD 148 (269)
Q Consensus 80 ~~~~~~~~~------v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~ 148 (269)
.++.+.+.. ....+++++++.+|++++|+|+||||||||+++|+|.+. +.+|.|.++|.++.. .+++.
T Consensus 8 ~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~~ 86 (280)
T PRK13633 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLWDIRNK 86 (280)
T ss_pred eeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHHHHhhh
Confidence 455555532 347788999999999999999999999999999999884 678999999987642 12333
Q ss_pred CCCChhhHH---------HHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 149 LSFKAEDRV---------ENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 149 ~g~~~~~~~---------~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
++|.+++.. +.+.. ...+...+...++.. .+..+++++++| ..+++++.++++
T Consensus 87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l- 165 (280)
T PRK13633 87 AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC- 165 (280)
T ss_pred eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 444443321 11100 011122333334422 233456666666 689999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHh
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|+|+..++....+.+.+.++
T Consensus 166 -lllDEPt~gLD~~~~~~l~~~l~ 188 (280)
T PRK13633 166 -IIFDEPTAMLDPSGRREVVNTIK 188 (280)
T ss_pred -EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999888776654
No 172
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.9e-13 Score=121.15 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=97.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+++|++++|+|+||||||||+++|+|.++ + +.+|.+.++|.++.. ..+..+
T Consensus 25 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 104 (268)
T PRK14248 25 KDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREI 104 (268)
T ss_pred EEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccE
Confidence 455665555556788899999999999999999999999999999763 1 468999999987642 112233
Q ss_pred CCChhh-------HHHHHHH------------HHH-HHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRR------------IGE-VAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~------------l~~-~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+++.. ..+ ....+...++. ..+...++++++| ..+++++.+++
T Consensus 105 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~ 184 (268)
T PRK14248 105 GMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPA 184 (268)
T ss_pred EEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCC
Confidence 333222 1111110 000 11122222321 1233456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 185 l--llLDEPt~~LD~~~~~~l~~~l~~ 209 (268)
T PRK14248 185 V--LLLDEPASALDPISNAKIEELITE 209 (268)
T ss_pred E--EEEcCCCcccCHHHHHHHHHHHHH
Confidence 9 999999999999988887766553
No 173
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.1e-13 Score=117.60 Aligned_cols=147 Identities=16% Similarity=0.215 Sum_probs=100.0
Q ss_pred EEeeCcee-eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH--
Q 024315 83 LWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR-- 156 (269)
Q Consensus 83 ~~~~~~v~-~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~-- 156 (269)
+.++++++ +.++++|....|++++|.|+|||||||+++.|+.+|. |.+|.+.++|-+..+ ..++.+|....+.
T Consensus 8 ~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~gl 86 (245)
T COG4555 8 TKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86 (245)
T ss_pred hhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-CCCceEEEeecccccChHHHhhhcceecCCcCh
Confidence 33444444 7789999999999999999999999999999999995 679999999987653 2233333222111
Q ss_pred ------HHHHHHHH------------HHHHHHHhCCcce-----eeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHH
Q 024315 157 ------VENIRRIG------------EVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 157 ------~~~~~~l~------------~~a~~~~~~g~~~-----iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
++++..++ ..+.+....++.. +..++.++++.-.++|+++.+|.+ +.+|+|...+
T Consensus 87 Y~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i--~vlDEP~sGL 164 (245)
T COG4555 87 YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI--LVLDEPTSGL 164 (245)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe--EEEcCCCCCc
Confidence 12222211 1222222333322 234556666666899999999999 8999999999
Q ss_pred HhcChhhHHHHHhcCcccc
Q 024315 214 EARDPKGLYKLAREGKVKG 232 (269)
Q Consensus 214 ~~R~~k~l~~~~r~g~~~~ 232 (269)
+-+..+.+.+-+.+-+-++
T Consensus 165 Di~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred cHHHHHHHHHHHHHhhcCC
Confidence 9988877766555433333
No 174
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.7e-13 Score=126.38 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=95.4
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhHH----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDRV---- 157 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~~---- 157 (269)
+.+.++++|.+.+|++++|+|+||||||||+++|++++. +.+|.|.++|.++.. .++..++|..|+..
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 567889999999999999999999999999999999884 568999999988642 12233444433310
Q ss_pred ------HHHH-------------HHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 158 ------ENIR-------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 158 ------~~~~-------------~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
+.+. ....+...+...++. ..+..+++++++| .++++++.++++ +++|||+..
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~l--LilDEPts~ 184 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDV--VVADEPVSA 184 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCE--EEEECCCcc
Confidence 0010 011223344444442 1234557777777 699999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++....+.+.+.++
T Consensus 185 LD~~~~~~i~~lL~ 198 (327)
T PRK11308 185 LDVSVQAQVLNLMM 198 (327)
T ss_pred CCHHHHHHHHHHHH
Confidence 99888777655443
No 175
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.3e-13 Score=121.14 Aligned_cols=146 Identities=17% Similarity=0.203 Sum_probs=98.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+++ +.+|.|.++|.++.. .++..+
T Consensus 16 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 95 (258)
T PRK14268 16 ENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNV 95 (258)
T ss_pred eeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhE
Confidence 4556655555567889999999999999999999999999999998753 368999999987631 112223
Q ss_pred CCChhhH-------HHHHHHH------------HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCc
Q 024315 150 SFKAEDR-------VENIRRI------------GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 150 g~~~~~~-------~~~~~~l------------~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
+|.+++. .+++... ..+...+...++. ..+...++++++| ..+++++.++++
T Consensus 96 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 175 (258)
T PRK14268 96 GMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKI 175 (258)
T ss_pred EEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 3333221 1111100 0112223333321 1123456666666 699999999999
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++......+++.+++
T Consensus 176 --lllDEPt~~LD~~~~~~l~~~l~~ 199 (258)
T PRK14268 176 --ILFDEPTSALDPISTARIEDLIMN 199 (258)
T ss_pred --EEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999988887766553
No 176
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.1e-13 Score=121.35 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=97.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||++.|+|.+.+ +.+|.|.++|.++.. .++..+
T Consensus 8 ~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i 87 (258)
T PRK14241 8 KDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTI 87 (258)
T ss_pred eeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcce
Confidence 4666666566678899999999999999999999999999999998853 258999999977621 112222
Q ss_pred CCChhh--------HHHHHHH------------HH-HHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCC
Q 024315 150 SFKAED--------RVENIRR------------IG-EVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 150 g~~~~~--------~~~~~~~------------l~-~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+|..++ ..+++.. .. .....+...++ ...+...++++++| ..+++++.++
T Consensus 88 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 167 (258)
T PRK14241 88 GMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEP 167 (258)
T ss_pred EEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 322221 0111110 00 11122323332 11233456666666 6899999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|+|+..++....+.+++.+++
T Consensus 168 ~l--lllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 168 DV--LLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred CE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 99 999999999998888777665543
No 177
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.48 E-value=9.3e-14 Score=135.52 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=93.9
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|.|.+ ++.+|.|.++|.++.+ .+++.+++.+|+. +++
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence 456678999999999999999999999999999988 5778999999998753 2333344444331 122
Q ss_pred HHHH------HHHHHHHHhC-----------Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 IRRI------GEVAKLFADA-----------GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~~~l------~~~a~~~~~~-----------g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+..- .++....... |+.. -....++++++| ..+|+++.++++ +.+|||++.++...
T Consensus 416 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i--lilDE~ts~lD~~~ 493 (529)
T TIGR02857 416 IRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL--LLLDEPTAHLDAET 493 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHH
Confidence 1100 0111111111 2211 223457777777 799999999999 99999999999999
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+++.+++
T Consensus 494 ~~~i~~~l~~ 503 (529)
T TIGR02857 494 EALVTEALRA 503 (529)
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 178
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.5e-13 Score=119.55 Aligned_cols=144 Identities=14% Similarity=0.232 Sum_probs=96.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
.++.+.+......+++++++++|++++|+|+||||||||++.|++.+ .+.+|.+.++|.++.. ..+..++|.++
T Consensus 7 ~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 85 (241)
T PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNIIIDDEDISLLPLHARARRGIGYLPQ 85 (241)
T ss_pred eCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHHhCeEEecc
Confidence 45666665566778899999999999999999999999999999988 4668999999977532 01122222222
Q ss_pred hH--------HHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 155 DR--------VENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 155 ~~--------~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
+. .+++.. .......+...++.. .....++++++| ..+++++.++++ +++|+
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDE 163 (241)
T PRK10895 86 EASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF--ILLDE 163 (241)
T ss_pred CCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 11 111100 001122233333322 223456666666 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++....+.+.+.++
T Consensus 164 Pt~~LD~~~~~~l~~~l~ 181 (241)
T PRK10895 164 PFAGVDPISVIDIKRIIE 181 (241)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999888877655443
No 179
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.48 E-value=6.8e-14 Score=141.03 Aligned_cols=134 Identities=22% Similarity=0.219 Sum_probs=94.2
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|+|++ +|.+|.|.+||.++.. .+++.++|.+|+. +++
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 346779999999999999999999999999999988 5779999999988753 3344444444331 111
Q ss_pred HH-------------HHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 160 IR-------------RIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 160 ~~-------------~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
+. ...+.+ .... ..|+... ....+++++|| ..+|+++.++++ +++|||++.++..
T Consensus 568 i~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i--liLDE~Ts~LD~~ 645 (708)
T TIGR01193 568 LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV--LILDESTSNLDTI 645 (708)
T ss_pred HhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE--EEEeCccccCCHH
Confidence 11 101110 1111 1122222 23457777777 799999999999 9999999999999
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
..+.+++.++.
T Consensus 646 te~~i~~~L~~ 656 (708)
T TIGR01193 646 TEKKIVNNLLN 656 (708)
T ss_pred HHHHHHHHHHH
Confidence 98888777664
No 180
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.8e-13 Score=122.72 Aligned_cols=145 Identities=15% Similarity=0.144 Sum_probs=97.6
Q ss_pred cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315 80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~ 153 (269)
.++.+.+.. ....+++++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+
T Consensus 11 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 89 (269)
T PRK13648 11 KNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKSGEIFYNNQAITDDNFEKLRKHIGIVF 89 (269)
T ss_pred EEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhheeEEE
Confidence 355555432 23567889999999999999999999999999999988 4668999999987632 1222334433
Q ss_pred hhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 154 EDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 154 ~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
++. .+++.. ...+...+...++.. .....++++++| ..+++++.++++ +++|
T Consensus 90 q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--llLD 167 (269)
T PRK13648 90 QNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV--IILD 167 (269)
T ss_pred eChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence 321 011100 011222333344322 223346666666 699999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHhc
Q 024315 208 VPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r~ 227 (269)
+|+..++....+.+.+.+++
T Consensus 168 EPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 168 EATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999998887766553
No 181
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2e-13 Score=120.92 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=98.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+..++.+.+|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++.. ..+..+
T Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i 87 (251)
T PRK14251 8 KDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEV 87 (251)
T ss_pred EeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccE
Confidence 4666666666677889999999999999999999999999999998852 358999999987631 112223
Q ss_pred CCChhh-------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|..++ ..+++.. . ......+...++. ..+...++++++| ..+++++.+++
T Consensus 88 ~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~ 167 (251)
T PRK14251 88 GMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPK 167 (251)
T ss_pred EEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 332221 1111110 0 0111223333331 1223346666666 68899999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 168 l--lllDEP~~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14251 168 V--VLLDEPTSALDPISSSEIEETLME 192 (251)
T ss_pred E--EEecCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999888877766553
No 182
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.48 E-value=2.7e-13 Score=121.30 Aligned_cols=135 Identities=21% Similarity=0.215 Sum_probs=93.1
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCCCCChhhH-----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR----- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~g~~~~~~----- 156 (269)
....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++... ++..++|.+++.
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 55778899999999999999999999999999999987 46789999999876421 122233333321
Q ss_pred -----HHHH----H--------H-HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -----VENI----R--------R-IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -----~~~~----~--------~-l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++ . . .......+...++. . .+...++++++| ..+++++.++++ +++|||+..
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~i--llLDEPt~~ 180 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKL--IVLDEAVSN 180 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence 0100 0 0 01122334444442 1 223446666666 689999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++....+.+.+.++
T Consensus 181 LD~~~~~~l~~~l~ 194 (265)
T TIGR02769 181 LDMVLQAVILELLR 194 (265)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988777665554
No 183
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=2.3e-13 Score=120.96 Aligned_cols=144 Identities=18% Similarity=0.164 Sum_probs=96.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++.. .++..++|.+++
T Consensus 6 ~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (255)
T PRK11231 6 ENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTVFLGDKPISMLSSRQLARRLALLPQH 84 (255)
T ss_pred EeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEEEECCEEhHHCCHHHHhhheEEeccc
Confidence 45666666666788899999999999999999999999999999987 4668999999976531 111112222211
Q ss_pred H--------HHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 156 R--------VENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 156 ~--------~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
. .+++.. .......+...++.. .....++++++| ..+++++.++++ +++
T Consensus 85 ~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lll 162 (255)
T PRK11231 85 HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV--VLL 162 (255)
T ss_pred CCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 0 011100 001122233333321 233446666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|+..++....+.+.+.++
T Consensus 163 DEP~~~LD~~~~~~l~~~l~ 182 (255)
T PRK11231 163 DEPTTYLDINHQVELMRLMR 182 (255)
T ss_pred cCCcccCCHHHHHHHHHHHH
Confidence 99999999998888776654
No 184
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=2.7e-13 Score=116.92 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=93.3
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhh---
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED--- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~--- 155 (269)
++.+.+.... ..+++.+.+|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++... .+..++|.+++
T Consensus 5 ~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~ 81 (211)
T cd03298 5 KIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVTAAPPADRPVSMLFQENNL 81 (211)
T ss_pred eEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCcCCHhHccEEEEeccccc
Confidence 4444444332 3789999999999999999999999999999988 46689999999876321 11111221111
Q ss_pred -----HHHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 156 -----RVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 156 -----~~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
..+++. .-..+...+...++.. .+...++++++| ..+++++.++++ +++|||+..+
T Consensus 82 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l--lllDEP~~~L 159 (211)
T cd03298 82 FAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV--LLLDEPFAAL 159 (211)
T ss_pred CCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccC
Confidence 111110 0011223344444422 233456666666 689999999999 9999999999
Q ss_pred HhcChhhHHHHHh
Q 024315 214 EARDPKGLYKLAR 226 (269)
Q Consensus 214 ~~R~~k~l~~~~r 226 (269)
+....+.+.+.++
T Consensus 160 D~~~~~~l~~~l~ 172 (211)
T cd03298 160 DPALRAEMLDLVL 172 (211)
T ss_pred CHHHHHHHHHHHH
Confidence 9998888776655
No 185
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.2e-13 Score=126.81 Aligned_cols=141 Identities=22% Similarity=0.239 Sum_probs=95.6
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~ 152 (269)
+++..+..+.. ++++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. ..++.++|.
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v 81 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccchhhCCEEEE
Confidence 34445544432 689999999999999999999999999999987 4668999999987642 112233333
Q ss_pred hhhH--------HHHHHH------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 153 AEDR--------VENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 153 ~~~~--------~~~~~~------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
.++. .+++.. ..++...+...++.. .+..+++++++| ..+++++.++++ +++|||+..+
T Consensus 82 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--lLLDEPts~L 159 (352)
T PRK11144 82 FQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL--LLMDEPLASL 159 (352)
T ss_pred cCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEcCCcccC
Confidence 3321 121110 012223344445432 234456777777 699999999999 9999999999
Q ss_pred HhcChhhHHHHHh
Q 024315 214 EARDPKGLYKLAR 226 (269)
Q Consensus 214 ~~R~~k~l~~~~r 226 (269)
+...++.+.+.++
T Consensus 160 D~~~~~~l~~~L~ 172 (352)
T PRK11144 160 DLPRKRELLPYLE 172 (352)
T ss_pred CHHHHHHHHHHHH
Confidence 9988877665544
No 186
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.48 E-value=2.8e-13 Score=120.41 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=97.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++.+.+......+.+++.+++|++++|+|+||||||||+++|+|.++ +.+|.+.++|.++.. .++..++|.+++
T Consensus 5 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 83 (256)
T TIGR03873 5 SRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQD 83 (256)
T ss_pred EeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEeccc
Confidence 356666666667889999999999999999999999999999999884 668999999987642 111112222221
Q ss_pred H--------HHHHH----------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 156 R--------VENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 156 ~--------~~~~~----------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
. .+++. ....+...+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lll 161 (256)
T TIGR03873 84 SDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL--LLL 161 (256)
T ss_pred CccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 0 11110 0011222333334322 233456666666 689999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHhc
Q 024315 207 DVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r~ 227 (269)
|+|+..++....+.+.+.+++
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred cCccccCCHHHHHHHHHHHHH
Confidence 999999999888877665543
No 187
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.47 E-value=3.9e-13 Score=116.49 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=95.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-cccCCCCChhh---
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKAED--- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-l~~~~g~~~~~--- 155 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||++.|+|.+ .+.+|.+.++|.++... .+..++|..+.
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~ 93 (214)
T PRK13543 15 HALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQIQIDGKTATRGDRSRFMAYLGHLPGL 93 (214)
T ss_pred eeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCeeEEECCEEccchhhhhceEEeecCccc
Confidence 45555554455678889999999999999999999999999999987 56789999999876421 11112222111
Q ss_pred -----HHHHHHH--------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 156 -----RVENIRR--------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 156 -----~~~~~~~--------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
..+++.. . ......+...++.. .+...++++++| ..++.++.++++ +++|+|+..++..
T Consensus 94 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~ 171 (214)
T PRK13543 94 KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL--WLLDEPYANLDLE 171 (214)
T ss_pred ccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHH
Confidence 1111110 0 01112233333321 223445666666 689999999998 9999999999998
Q ss_pred ChhhHHHHHh
Q 024315 217 DPKGLYKLAR 226 (269)
Q Consensus 217 ~~k~l~~~~r 226 (269)
..+.+.+.++
T Consensus 172 ~~~~l~~~l~ 181 (214)
T PRK13543 172 GITLVNRMIS 181 (214)
T ss_pred HHHHHHHHHH
Confidence 8887766654
No 188
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.47 E-value=2e-13 Score=127.23 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=95.8
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~ 152 (269)
++++.++.+.. ++++.+.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++.. ..+..++|.
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEE
Confidence 34555555443 7899999999999999999999999999999884 668999999987632 112223332
Q ss_pred hhhH--------HHHHHH----------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 153 AEDR--------VENIRR----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 153 ~~~~--------~~~~~~----------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
.++. .+++.. ...+...+...++.. .+..+++++++| ..+++++.++++ +++|||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l--llLDEP 158 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL--LLMDEP 158 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCC
Confidence 2211 111110 011223344445432 233456777777 699999999999 999999
Q ss_pred hhHHHhcChhhHHHHHh
Q 024315 210 LQVCEARDPKGLYKLAR 226 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r 226 (269)
+..++...++.+++.++
T Consensus 159 ts~LD~~~~~~l~~~L~ 175 (354)
T TIGR02142 159 LAALDDPRKYEILPYLE 175 (354)
T ss_pred CcCCCHHHHHHHHHHHH
Confidence 99999998887766554
No 189
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.47 E-value=2.8e-13 Score=117.21 Aligned_cols=142 Identities=16% Similarity=0.209 Sum_probs=93.9
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh---
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED--- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~--- 155 (269)
++++.+.. .....++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..++|.+++
T Consensus 5 ~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 81 (213)
T TIGR01277 5 KVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNL 81 (213)
T ss_pred eeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccCChhccceEEEeccCcc
Confidence 44444432 234688999999999999999999999999999988 4668999999987642 112222222221
Q ss_pred -----HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 156 -----RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 156 -----~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
..+++.. -..+...+...++.. .+...++++++| ..+++++.++++ +++|+|+..+
T Consensus 82 ~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~L 159 (213)
T TIGR01277 82 FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI--LLLDEPFSAL 159 (213)
T ss_pred CCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCCccC
Confidence 1111110 011222334444422 233456666666 688999999998 9999999999
Q ss_pred HhcChhhHHHHHhc
Q 024315 214 EARDPKGLYKLARE 227 (269)
Q Consensus 214 ~~R~~k~l~~~~r~ 227 (269)
+....+.+++.+++
T Consensus 160 D~~~~~~~~~~l~~ 173 (213)
T TIGR01277 160 DPLLREEMLALVKQ 173 (213)
T ss_pred CHHHHHHHHHHHHH
Confidence 99988887766543
No 190
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=2.2e-13 Score=123.36 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=94.4
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCChhhH-----
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFKAEDR----- 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~~~~~----- 156 (269)
...+++++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..++|.+++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 4678889999999999999999999999999999988 4678999999987632 1122334443321
Q ss_pred ----HHHHHH-----------H-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 157 ----VENIRR-----------I-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 157 ----~~~~~~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
.+++.. . ..+...+...++. . .+..+++++++| ..+++++.++++ +++|||+..++
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~l--LlLDEPt~gLD 177 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEI--LCLDEPAAGLD 177 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEECCCCCCC
Confidence 111110 0 0122233444542 1 133456666666 689999999999 99999999999
Q ss_pred hcChhhHHHHHhc
Q 024315 215 ARDPKGLYKLARE 227 (269)
Q Consensus 215 ~R~~k~l~~~~r~ 227 (269)
....+.+.+.+++
T Consensus 178 ~~~~~~l~~~l~~ 190 (287)
T PRK13641 178 PEGRKEMMQLFKD 190 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9888887766553
No 191
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=1.1e-13 Score=120.76 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=93.8
Q ss_pred ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
++.+.+.. ....++.++++.+|++++|+|+||||||||+++|++.++ +.+|.+.++|.++.. .++..++|.+++
T Consensus 7 ~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 85 (229)
T cd03254 7 NVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGVVLQD 85 (229)
T ss_pred EEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEEecCC
Confidence 44554432 346778899999999999999999999999999999884 668999999977532 112223333332
Q ss_pred HH-------HHHH---------HHHH------HHHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 156 RV-------ENIR---------RIGE------VAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 156 ~~-------~~~~---------~l~~------~a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.. +.+. .+.. ....+... ++. ..+...++++++| ..+++++.++++ +++
T Consensus 86 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l--lll 163 (229)
T cd03254 86 TFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI--LIL 163 (229)
T ss_pred chhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 11 0000 0000 00000000 111 1123456666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHhc
Q 024315 207 DVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r~ 227 (269)
|+|+..++...++.+++.++.
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~ 184 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEK 184 (229)
T ss_pred eCccccCCHHHHHHHHHHHHH
Confidence 999999999988887766654
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=4.9e-13 Score=120.10 Aligned_cols=146 Identities=21% Similarity=0.168 Sum_probs=96.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+........+++.+++|++++|+|+||||||||+++|+|.+.. +.+|.+.++|.++.. .++..+
T Consensus 29 ~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i 108 (272)
T PRK14236 29 RNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRV 108 (272)
T ss_pred EEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccE
Confidence 4556555555567888999999999999999999999999999998753 368999999987642 112223
Q ss_pred CCChhh-------HHHHHHHH-------------HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRRI-------------GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~l-------------~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+++... ..+...+...++. ......++++++| ..+++++.+++
T Consensus 109 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 188 (272)
T PRK14236 109 GMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPE 188 (272)
T ss_pred EEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCC
Confidence 333221 11111100 0111222222321 1233456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+.+.+++
T Consensus 189 l--llLDEPt~gLD~~~~~~l~~~L~~ 213 (272)
T PRK14236 189 V--LLLDEPTSALDPISTLKIEELITE 213 (272)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 9 999999999999888777665543
No 193
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.47 E-value=1.1e-13 Score=139.76 Aligned_cols=129 Identities=22% Similarity=0.242 Sum_probs=90.1
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHHH
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VENI 160 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~~ 160 (269)
.++.++++++|+.++|+|+||||||||++.|.|.+ ++.+|.|.+||.++.+ .+++.+++.+|+. ++++
T Consensus 497 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI 575 (711)
T TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENI 575 (711)
T ss_pred ccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHH
Confidence 45668999999999999999999999999999988 5779999999988753 2333334333321 1111
Q ss_pred ------------HHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 161 ------------RRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 161 ------------~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
....+.+ .... ..|.... ....+++++|| ..+|+++.++++ +.+|||++.+|....
T Consensus 576 ~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I--LILDEpTSaLD~~te 653 (711)
T TIGR00958 576 AYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV--LILDEATSALDAECE 653 (711)
T ss_pred hcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEEccccccCHHHH
Confidence 1111110 1111 1122221 23457788887 799999999999 999999999999887
Q ss_pred hhHHH
Q 024315 219 KGLYK 223 (269)
Q Consensus 219 k~l~~ 223 (269)
+.+++
T Consensus 654 ~~i~~ 658 (711)
T TIGR00958 654 QLLQE 658 (711)
T ss_pred HHHHH
Confidence 77776
No 194
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2.8e-13 Score=120.61 Aligned_cols=146 Identities=19% Similarity=0.213 Sum_probs=97.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+........+++++.+|++++|+|+||||||||++.|+|.+.+ + .+|.+.++|.++.. .++..+
T Consensus 16 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 95 (259)
T PRK14274 16 NGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNI 95 (259)
T ss_pred eeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhce
Confidence 5666666555677889999999999999999999999999999998752 2 47999999987631 112223
Q ss_pred CCChhh-------HHHHHH---H---------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIR---R---------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~---~---------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+++. . . ......+...++. ......++++++| ..+++++.+++
T Consensus 96 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~ 175 (259)
T PRK14274 96 GMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPD 175 (259)
T ss_pred EEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 333221 111110 0 0 0111223333331 1223346666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+.+.+++
T Consensus 176 l--lllDEPt~~LD~~~~~~l~~~l~~ 200 (259)
T PRK14274 176 V--LLMDEPTSALDPVSTRKIEELILK 200 (259)
T ss_pred E--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 8 999999999999888877766553
No 195
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=1.9e-13 Score=123.98 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=98.5
Q ss_pred cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccc
Q 024315 80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLN 146 (269)
Q Consensus 80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~ 146 (269)
.++.+.+.. ....+++++++++|++++|+|+||||||||+++|.+.+ .+.+|.|.++|.++.. ..+
T Consensus 6 ~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (290)
T PRK13634 6 QKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTVTIGERVITAGKKNKKLKPLR 84 (290)
T ss_pred EEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHHHHH
Confidence 345555532 34678899999999999999999999999999999988 4678999999987631 112
Q ss_pred cCCCCChhhH---------HHHHHH-----------H-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCC
Q 024315 147 RDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 147 ~~~g~~~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
..++|..|+. .+++.. . ..+...+...++. . .+..+++++++| .++++++.++
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P 164 (290)
T PRK13634 85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP 164 (290)
T ss_pred hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2344444321 111100 0 1122233444542 2 233456666666 6999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++ +++|+|+..++....+.+.+.++
T Consensus 165 ~l--lllDEPt~~LD~~~~~~l~~~L~ 189 (290)
T PRK13634 165 EV--LVLDEPTAGLDPKGRKEMMEMFY 189 (290)
T ss_pred CE--EEEECCcccCCHHHHHHHHHHHH
Confidence 99 99999999999988887665543
No 196
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.47 E-value=1.3e-13 Score=119.71 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=94.0
Q ss_pred ceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
++.+.+. .....+++++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. .++..++|.++
T Consensus 7 ~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (221)
T cd03244 7 NVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILIDGVDISKIGLHDLRSRISIIPQ 85 (221)
T ss_pred EEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhHhCCHHHHhhhEEEECC
Confidence 4444443 234678889999999999999999999999999999987 4678999999987532 11222222222
Q ss_pred hH-------HHHHHH-----HHHHHHHHHhCCcc---------------eeeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 155 DR-------VENIRR-----IGEVAKLFADAGVI---------------CIACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 155 ~~-------~~~~~~-----l~~~a~~~~~~g~~---------------~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+. .+++.. ..+....+...++. ......++++++| ..+++++.++++ +++
T Consensus 86 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l--lll 163 (221)
T cd03244 86 DPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI--LVL 163 (221)
T ss_pred CCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 11 111100 00011111111111 1223445666666 699999999998 999
Q ss_pred eCChhHHHhcChhhHHHHHhc
Q 024315 207 DVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r~ 227 (269)
|+|+..++....+.+++.+++
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~ 184 (221)
T cd03244 164 DEATASVDPETDALIQKTIRE 184 (221)
T ss_pred eCccccCCHHHHHHHHHHHHH
Confidence 999999999998888777664
No 197
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=4.3e-13 Score=118.67 Aligned_cols=146 Identities=19% Similarity=0.207 Sum_probs=96.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|++.++. + .+|.|.++|.++.. .++..+
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14240 7 KDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRV 86 (250)
T ss_pred EEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccE
Confidence 4566665555677889999999999999999999999999999998642 2 47999999987642 112223
Q ss_pred CCChhh-------HHHHHHH------------HH-HHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRR------------IG-EVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~------------l~-~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+++.. .. .....+...++. ..+...++++++| ..+++++.+++
T Consensus 87 ~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 166 (250)
T PRK14240 87 GMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPE 166 (250)
T ss_pred EEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 332221 1111110 00 111112222221 1123356666666 69999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+.+.+++
T Consensus 167 l--lllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14240 167 V--LLMDEPTSALDPISTLKIEELIQE 191 (250)
T ss_pred E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999888877766553
No 198
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=1.9e-13 Score=123.08 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=92.3
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCChhhH-----
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFKAEDR----- 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~~~~~----- 156 (269)
...+++++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+++.
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 3567889999999999999999999999999999987 4678999999987632 1122334433321
Q ss_pred ----HHHHHH-----------HH-HHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 157 ----VENIRR-----------IG-EVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 157 ----~~~~~~-----------l~-~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
.+++.. .. .....+...++.. .+...++++++| ..+++++.++++ +++|+|+..++
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~~LD 177 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKI--LVLDEPTAGLD 177 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCC
Confidence 111110 00 1112233334421 133456666666 688999999999 99999999999
Q ss_pred hcChhhHHHHHh
Q 024315 215 ARDPKGLYKLAR 226 (269)
Q Consensus 215 ~R~~k~l~~~~r 226 (269)
....+.+++.++
T Consensus 178 ~~~~~~l~~~l~ 189 (280)
T PRK13649 178 PKGRKELMTLFK 189 (280)
T ss_pred HHHHHHHHHHHH
Confidence 988888776654
No 199
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=135.21 Aligned_cols=134 Identities=20% Similarity=0.307 Sum_probs=92.5
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|+|.+ +|.+|.|.++|.++.. .+++.++|.+|+- +++
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 436 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN 436 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHH
Confidence 346679999999999999999999999999999988 5678999999988652 2233333333321 111
Q ss_pred HHHH-------HHHHHHHH-----------hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 160 IRRI-------GEVAKLFA-----------DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 160 ~~~l-------~~~a~~~~-----------~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
+..- .++...+. ..|+... ....++++++| ..+|+++.++++ +.+|||++.+|..
T Consensus 437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i--lilDEptsaLD~~ 514 (582)
T PRK11176 437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI--LILDEATSALDTE 514 (582)
T ss_pred HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE--EEEECccccCCHH
Confidence 1100 00111111 1222221 23357788777 699999999999 9999999999999
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
..+.+++.+..
T Consensus 515 t~~~i~~~l~~ 525 (582)
T PRK11176 515 SERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHH
Confidence 98887766554
No 200
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=1.9e-13 Score=122.92 Aligned_cols=143 Identities=19% Similarity=0.201 Sum_probs=96.8
Q ss_pred ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
++.+.+. ......++++++++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. .++..++|.++
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 84 (274)
T PRK13644 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQ 84 (274)
T ss_pred EEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEECCccccHHHHHhheEEEEE
Confidence 4555552 345678889999999999999999999999999999987 4678999999987642 11222333333
Q ss_pred hH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 155 DR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 155 ~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
+. .+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|+
T Consensus 85 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDE 162 (274)
T PRK13644 85 NPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC--LIFDE 162 (274)
T ss_pred ChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeC
Confidence 21 011100 011222233344422 233456666666 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++......+.+.++
T Consensus 163 Pt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 163 VTSMLDPDSGIAVLERIK 180 (274)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999888777665554
No 201
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.47 E-value=3.7e-13 Score=118.40 Aligned_cols=144 Identities=23% Similarity=0.252 Sum_probs=98.0
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH--
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-- 156 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-- 156 (269)
++.+.+......+..++++.+|++++|+|+||||||||++.|++.+ ++..|.+.++|.++.. ..+..++|.+++.
T Consensus 5 ~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~ 83 (237)
T TIGR00968 5 NISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDATRVHARDRKIGFVFQHYAL 83 (237)
T ss_pred EEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcCEEEEecChhh
Confidence 4555555566788899999999999999999999999999999987 4668999999987642 1112222222211
Q ss_pred ------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 157 ------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 157 ------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
.+++.. .......+...++.. .....++++++| ..+++++.++++ +++|+|+..+
T Consensus 84 ~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~~~L 161 (237)
T TIGR00968 84 FKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV--LLLDEPFGAL 161 (237)
T ss_pred ccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccC
Confidence 111110 011223333344422 123345566665 699999999999 9999999999
Q ss_pred HhcChhhHHHHHhc
Q 024315 214 EARDPKGLYKLARE 227 (269)
Q Consensus 214 ~~R~~k~l~~~~r~ 227 (269)
+....+.+++.+.+
T Consensus 162 D~~~~~~~~~~l~~ 175 (237)
T TIGR00968 162 DAKVRKELRSWLRK 175 (237)
T ss_pred CHHHHHHHHHHHHH
Confidence 99988887766654
No 202
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=4.8e-13 Score=117.24 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=99.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~- 156 (269)
.++.+.+......++.++.+.+|++++|+|+||||||||+++|++.++ +..|.+.++|.++... .+..+++.+++.
T Consensus 4 ~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (232)
T cd03300 4 ENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYA 82 (232)
T ss_pred EeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccc
Confidence 355666655667889999999999999999999999999999999884 6689999999876421 112223222211
Q ss_pred -------HHHHHHH------------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRRI------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~l------------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++... ......+...++.. .+...+.++++| ..+++++.++++ +++|+|+..
T Consensus 83 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~~g 160 (232)
T cd03300 83 LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV--LLLDEPLGA 160 (232)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence 1111100 01122333334422 223345666665 689999999999 999999999
Q ss_pred HHhcChhhHHHHHhc
Q 024315 213 CEARDPKGLYKLARE 227 (269)
Q Consensus 213 l~~R~~k~l~~~~r~ 227 (269)
++....+.+++.+++
T Consensus 161 LD~~~~~~l~~~l~~ 175 (232)
T cd03300 161 LDLKLRKDMQLELKR 175 (232)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999888866653
No 203
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.9e-13 Score=122.50 Aligned_cols=146 Identities=19% Similarity=0.198 Sum_probs=97.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||+++|+|.+. + +.+|.|.++|.++.. .++..+
T Consensus 43 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i 122 (286)
T PRK14275 43 KNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKI 122 (286)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcE
Confidence 456666655556788999999999999999999999999999999753 2 368999999977531 122233
Q ss_pred CCChhhH-------HHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. . ......+...++ ...+..+++++++| ..+++++.+++
T Consensus 123 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~ 202 (286)
T PRK14275 123 GMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPE 202 (286)
T ss_pred EEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3333221 111100 0 011122222222 11233456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+.+.+++
T Consensus 203 l--llLDEPt~gLD~~~~~~l~~~L~~ 227 (286)
T PRK14275 203 I--LLLDEPTSALDPKATAKIEDLIQE 227 (286)
T ss_pred E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999888887766653
No 204
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.46 E-value=2.8e-13 Score=121.34 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=92.8
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH--------
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV-------- 157 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~-------- 157 (269)
...+.+++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++.. ..+..++|.+++..
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 4677889999999999999999999999999999988 4668999999987642 11122333332210
Q ss_pred --HHHH------------H-HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 158 --ENIR------------R-IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 158 --~~~~------------~-l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
+.+. . ...+...+...++. . .+...++++++| ..+++++.++++ +++|||+..++..
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEPt~~LD~~ 183 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKV--IIADEALASLDMS 183 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCE--EEEcCCcccCCHH
Confidence 0100 0 01122334444442 1 123456666666 688999999999 9999999999998
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
..+.+++.+++
T Consensus 184 ~~~~l~~~l~~ 194 (267)
T PRK15112 184 MRSQLINLMLE 194 (267)
T ss_pred HHHHHHHHHHH
Confidence 88877766553
No 205
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2.1e-13 Score=122.64 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=97.9
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCC
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~ 152 (269)
.++.+.+. .....+++++++++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++.. .++..++|.
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 83 (275)
T PRK13639 5 RDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV 83 (275)
T ss_pred EEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEECccccchHHHHHhheEEE
Confidence 34555553 344678889999999999999999999999999999988 4668999999987631 122333444
Q ss_pred hhhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 153 AEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 153 ~~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+++. .+.+.. .......+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 84 ~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l--lll 161 (275)
T PRK13639 84 FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI--IVL 161 (275)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 3331 111110 011223333444422 233456666666 689999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|+..++....+.+.+.++
T Consensus 162 DEPt~gLD~~~~~~l~~~l~ 181 (275)
T PRK13639 162 DEPTSGLDPMGASQIMKLLY 181 (275)
T ss_pred eCCCcCCCHHHHHHHHHHHH
Confidence 99999999998887665554
No 206
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.46 E-value=5.3e-13 Score=116.55 Aligned_cols=142 Identities=18% Similarity=0.065 Sum_probs=95.5
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCC----ChhhH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF----KAEDR 156 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~----~~~~~ 156 (269)
+++..+......+.+++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. ......+ +..+.
T Consensus 27 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~-~~~~~~~~~~~tv~en 104 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTVTVRGRVSSL-LGLGGGFNPELTGREN 104 (224)
T ss_pred hhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEchh-hcccccCCCCCcHHHH
Confidence 4455566677889999999999999999999999999999999987 4678999999976531 1111111 11111
Q ss_pred HHHHH--------HH-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315 157 VENIR--------RI-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 157 ~~~~~--------~l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~ 222 (269)
..... .. ......+...++.. .+...++++++| ..+++++.++++ +++|+|+..++...++.++
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEP~~gLD~~~~~~~~ 182 (224)
T cd03220 105 IYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI--LLIDEVLAVGDAAFQEKCQ 182 (224)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHH
Confidence 11000 00 01122222333322 234456666666 689999999999 9999999999998877766
Q ss_pred HHHh
Q 024315 223 KLAR 226 (269)
Q Consensus 223 ~~~r 226 (269)
+.++
T Consensus 183 ~~l~ 186 (224)
T cd03220 183 RRLR 186 (224)
T ss_pred HHHH
Confidence 6554
No 207
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.46 E-value=1.5e-13 Score=138.17 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=94.0
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH-------HHH
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV-------ENI 160 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~-------~~~ 160 (269)
.++.++++++|+.++|+|+||||||||++.|+|.+ ++.+|.|.+||.++.. .++..+++.+|+.. +++
T Consensus 481 L~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi 559 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI 559 (694)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH
Confidence 45678999999999999999999999999999988 5779999999988763 34445555554321 111
Q ss_pred HH------HHHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 161 RR------IGEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 161 ~~------l~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
.. ..++....... |.... ....+++++|| ..+|+++.++++ +.+|||++.++....
T Consensus 560 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i--liLDE~Ts~LD~~te 637 (694)
T TIGR03375 560 ALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI--LLLDEPTSAMDNRSE 637 (694)
T ss_pred hCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH
Confidence 10 00111111111 22221 23457777777 799999999999 999999999999998
Q ss_pred hhHHHHHhc
Q 024315 219 KGLYKLARE 227 (269)
Q Consensus 219 k~l~~~~r~ 227 (269)
+.+++.+++
T Consensus 638 ~~i~~~l~~ 646 (694)
T TIGR03375 638 ERFKDRLKR 646 (694)
T ss_pred HHHHHHHHH
Confidence 887766553
No 208
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.4e-13 Score=122.08 Aligned_cols=144 Identities=18% Similarity=0.237 Sum_probs=94.7
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc-cCCCCChhhH-
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~-~~~g~~~~~~- 156 (269)
.++.+.+. .....+.+++++++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++..... ..++|.+++.
T Consensus 10 ~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~ 88 (272)
T PRK15056 10 NDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEE 88 (272)
T ss_pred EeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEeccccc
Confidence 35555542 3446678899999999999999999999999999999884 668999999976532111 1112221110
Q ss_pred ---------HHHH---------------HHH-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 157 ---------VENI---------------RRI-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 157 ---------~~~~---------------~~l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.+.+ ... ......+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 89 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l--lll 166 (272)
T PRK15056 89 VDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV--ILL 166 (272)
T ss_pred cccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 0000 000 01112233334321 233456666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|+..++....+.+.+.++
T Consensus 167 DEPt~~LD~~~~~~l~~~L~ 186 (272)
T PRK15056 167 DEPFTGVDVKTEARIISLLR 186 (272)
T ss_pred eCCCccCCHHHHHHHHHHHH
Confidence 99999999998888776654
No 209
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2.1e-13 Score=122.86 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=96.6
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
.++.+.+. .....+++++++++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++.. .++..++|..+
T Consensus 7 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 85 (277)
T PRK13652 7 RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSVLIRGEPITKENIREVRKFVGLVFQ 85 (277)
T ss_pred EEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence 45555553 334678889999999999999999999999999999987 4678999999987642 11222333222
Q ss_pred hH---------HHHHHHH------------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 155 DR---------VENIRRI------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 155 ~~---------~~~~~~l------------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
+. .+++... ..+...+...++.. .+...++++++| ..+++++.++++ +++|+
T Consensus 86 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l--lilDE 163 (277)
T PRK13652 86 NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV--LVLDE 163 (277)
T ss_pred CcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeC
Confidence 21 1111100 01122233334322 233456666666 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++....+.+++.++
T Consensus 164 Pt~gLD~~~~~~l~~~l~ 181 (277)
T PRK13652 164 PTAGLDPQGVKELIDFLN 181 (277)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999888887766554
No 210
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.46 E-value=3.4e-13 Score=124.60 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=93.8
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR----- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~----- 156 (269)
+...++++|.+++|++++|+|+||||||||+++|++++. +.+|.|.++|.++.. .++..++|..|+.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 567889999999999999999999999999999999884 678999999988642 1222333333321
Q ss_pred -----HHHHH-------------HH-HHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 -----VENIR-------------RI-GEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 -----~~~~~-------------~l-~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+++. .. ..+..++...++. .....+++++++| .++++++.++++ +++|||+.
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l--lilDEPts 190 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL--IICDEPVS 190 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence 01110 00 0112233344441 1233457777777 699999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++...++.+.+.++
T Consensus 191 ~LD~~~~~~i~~lL~ 205 (331)
T PRK15079 191 ALDVSIQAQVVNLLQ 205 (331)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999888877655443
No 211
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=4.1e-13 Score=119.64 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=98.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC----CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~----~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||++.|++.+++. .+|.+.++|.++.. .++..+
T Consensus 11 ~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 90 (259)
T PRK14260 11 KDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQI 90 (259)
T ss_pred EEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhhe
Confidence 46666665566778899999999999999999999999999999988532 37999999987631 112223
Q ss_pred CCChhhH-------HHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. . ......+...++. ..+...++++++| ..+++++.+++
T Consensus 91 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 170 (259)
T PRK14260 91 GMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPK 170 (259)
T ss_pred EEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3322221 111110 0 0111223333321 1223456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.++.
T Consensus 171 l--llLDEPt~~LD~~~~~~l~~~l~~ 195 (259)
T PRK14260 171 V--LLMDEPCSALDPIATMKVEELIHS 195 (259)
T ss_pred E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999888887766553
No 212
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.46 E-value=2.1e-13 Score=120.82 Aligned_cols=144 Identities=20% Similarity=0.155 Sum_probs=95.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-----cCc--------ccc
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRH--------GLN 146 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-----~~~--------~l~ 146 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||++.|++.+ ++.+|.|.++|.+ +.. ..+
T Consensus 7 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR02323 7 SGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTATYIMRSGAELELYQLSEAERRRLMR 85 (253)
T ss_pred eeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecccccccccccCCHHHHHHhhh
Confidence 45555554445678889999999999999999999999999999987 4668999999865 321 011
Q ss_pred cCCCCChhhH----------HHHHH------------H-HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCC
Q 024315 147 RDLSFKAEDR----------VENIR------------R-IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLP 197 (269)
Q Consensus 147 ~~~g~~~~~~----------~~~~~------------~-l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~ 197 (269)
..++|..++. .+.+. . .......+...++.. .+...++++++| ..+++++.
T Consensus 86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~ 165 (253)
T TIGR02323 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVT 165 (253)
T ss_pred cceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhc
Confidence 1223322221 00100 0 011222333334321 233456666666 69999999
Q ss_pred CCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 198 ~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++++ +++|+|+..++....+.+++.++
T Consensus 166 ~p~v--lllDEP~~~LD~~~~~~l~~~l~ 192 (253)
T TIGR02323 166 RPRL--VFMDEPTGGLDVSVQARLLDLLR 192 (253)
T ss_pred CCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence 9999 99999999999998888776554
No 213
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2.3e-13 Score=125.18 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=97.6
Q ss_pred cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----------
Q 024315 80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------- 143 (269)
Q Consensus 80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----------- 143 (269)
.++++.+.. ....+++++.+.+|++++|+|+||||||||+++|++++ .+.+|.|.++|.++..
T Consensus 25 ~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~~~ 103 (320)
T PRK13631 25 KNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGTIQVGDIYIGDKKNNHELITNP 103 (320)
T ss_pred EeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCEEcccccccccccccc
Confidence 456665532 24678889999999999999999999999999999988 4678999999866532
Q ss_pred ---------ccccCCCCChhhH---------HHHHHH-----------H-HHHHHHHHhCCcc-e----eeccCChHHHH
Q 024315 144 ---------GLNRDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVI-C----IACLISPYRKD 188 (269)
Q Consensus 144 ---------~l~~~~g~~~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~ 188 (269)
.++..++|..|+. .+++.. . ......+...++. . .+..+++++++
T Consensus 104 ~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkq 183 (320)
T PRK13631 104 YSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKR 183 (320)
T ss_pred cccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHH
Confidence 1122334333321 111100 0 1112223333442 1 23345677777
Q ss_pred H-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 189 r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
| .++++++.++++ +++|+|+..++....+.+.+.++
T Consensus 184 RvaiAraL~~~p~i--LLLDEPtsgLD~~~~~~l~~~L~ 220 (320)
T PRK13631 184 RVAIAGILAIQPEI--LIFDEPTAGLDPKGEHEMMQLIL 220 (320)
T ss_pred HHHHHHHHHcCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence 7 689999999999 99999999999998888776554
No 214
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.46 E-value=2.3e-13 Score=118.06 Aligned_cols=144 Identities=23% Similarity=0.284 Sum_probs=93.8
Q ss_pred ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
++.+.+.. ....++.++.+++|++++|+|+||||||||+++|++.+ .+..|.+.++|.++.. ..+..++|.++
T Consensus 7 ~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (220)
T cd03245 7 NVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ 85 (220)
T ss_pred EEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhHHCCHHHHHhhEEEeCC
Confidence 44444432 34678889999999999999999999999999999987 4668999999976531 11112222222
Q ss_pred hH-------HHHHHH------HHHHHHHHHhCCcce---------------eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 155 DR-------VENIRR------IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 155 ~~-------~~~~~~------l~~~a~~~~~~g~~~---------------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
+. .+.+.. -......+...++.. .....++++++| ..+++++.++++ ++
T Consensus 86 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l--ll 163 (220)
T cd03245 86 DVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI--LL 163 (220)
T ss_pred CCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 11 111100 001111111112211 112456666666 689999999998 99
Q ss_pred EeCChhHHHhcChhhHHHHHhc
Q 024315 206 MDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+|+|+..++....+.+++.+++
T Consensus 164 lDEPt~~LD~~~~~~l~~~l~~ 185 (220)
T cd03245 164 LDEPTSAMDMNSEERLKERLRQ 185 (220)
T ss_pred EeCccccCCHHHHHHHHHHHHH
Confidence 9999999999998888877664
No 215
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=5.7e-13 Score=118.10 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=97.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++++.+......+.+++.+.+|++++|+|+||||||||+++|++.++ + +.+|.|.++|.++.. .++..+
T Consensus 8 ~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i 87 (252)
T PRK14256 8 EQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRV 87 (252)
T ss_pred EEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccE
Confidence 466666655667889999999999999999999999999999999874 2 247999999987632 112222
Q ss_pred CCChhh--------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCC
Q 024315 150 SFKAED--------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 150 g~~~~~--------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+|.+++ ..+++.. . ......+...++. ..+...++++++| ..+++++.++
T Consensus 88 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p 167 (252)
T PRK14256 88 GMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKP 167 (252)
T ss_pred EEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCC
Confidence 222221 1111110 0 0112223333331 1133356666666 6889999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++ +++|+|+..++....+.+++.++
T Consensus 168 ~l--lllDEP~~gLD~~~~~~l~~~l~ 192 (252)
T PRK14256 168 EV--ILMDEPASALDPISTLKIEELIE 192 (252)
T ss_pred CE--EEEcCCcccCCHHHHHHHHHHHH
Confidence 98 99999999999988887776554
No 216
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=4.8e-13 Score=123.53 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=95.1
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc---CCccEEEECCeecCc----cc----ccCCCCChhhH
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRH----GL----NRDLSFKAEDR 156 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~---~~~g~i~l~g~~~~~----~l----~~~~g~~~~~~ 156 (269)
.+.+.++++|.+++|++++|+|+||||||||+++|++++.+ +.+|.|.++|.++.. .+ ++.++|..|+.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 46678999999999999999999999999999999998853 457999999987642 00 12334333321
Q ss_pred H----------HHHH------------------HHHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCC
Q 024315 157 V----------ENIR------------------RIGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 157 ~----------~~~~------------------~l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
. +.+. ....+...+...++.. ....+++++++| .++++++.+++
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 1 0000 0012233444455531 233456777777 69999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+ +++|||+..++...++.+.+.++
T Consensus 179 l--lilDEPts~LD~~~~~~i~~lL~ 202 (330)
T PRK15093 179 L--LIADEPTNAMEPTTQAQIFRLLT 202 (330)
T ss_pred E--EEEeCCCCcCCHHHHHHHHHHHH
Confidence 9 99999999999888777665544
No 217
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.46 E-value=3.2e-13 Score=119.99 Aligned_cols=145 Identities=21% Similarity=0.195 Sum_probs=96.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc---CCccEEEECCeecCc-cc-ccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRH-GL-NRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~---~~~g~i~l~g~~~~~-~l-~~~~g~~~~ 154 (269)
.++++.+ .....+..++.+.+|++++|+|+||||||||++.|+|.+++ +.+|.|.++|.++.. .. +..++|.++
T Consensus 8 ~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q 86 (254)
T PRK10418 8 RNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQ 86 (254)
T ss_pred eCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEec
Confidence 3555554 34467788999999999999999999999999999998853 168999999987631 11 112222222
Q ss_pred hH----------HHHHH----H------HHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 155 DR----------VENIR----R------IGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 155 ~~----------~~~~~----~------l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+. .+... . ...+...+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l--LlL 164 (254)
T PRK10418 87 NPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF--IIA 164 (254)
T ss_pred CCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 21 00000 0 011223334444422 123356666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHhc
Q 024315 207 DVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r~ 227 (269)
|+|+..++......+++.+++
T Consensus 165 DEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 165 DEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred eCCCcccCHHHHHHHHHHHHH
Confidence 999999999888777666543
No 218
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.46 E-value=1.4e-12 Score=108.78 Aligned_cols=145 Identities=21% Similarity=0.262 Sum_probs=89.5
Q ss_pred EcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccc---cCCCCChhhHHHHHHHHHHHHHHHHhC-Ccceeecc
Q 024315 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLN---RDLSFKAEDRVENIRRIGEVAKLFADA-GVICIACL 181 (269)
Q Consensus 108 ~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~---~~~g~~~~~~~~~~~~l~~~a~~~~~~-g~~~iv~~ 181 (269)
+|+|||||||+++.|++.+. .+++++|.+.. .++ .+..+....+..+...+...+...... +..+++ +
T Consensus 1 ~G~sGsGKSTla~~la~~l~-----~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~ 74 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH-----AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C 74 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC-----CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence 59999999999999999883 46889886421 111 122344444445555555554433333 333344 4
Q ss_pred CChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCCCC---eEEEcCCC
Q 024315 182 ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLNCE---VGVHVWYR 255 (269)
Q Consensus 182 ~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~~e---~~id~~~~ 255 (269)
....+..|+.+++ ..++|..+++++|.+.|.+|..+ |.++... +..+...||+|+..| ++||++
T Consensus 75 s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~------R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~-- 144 (163)
T PRK11545 75 SALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKA------RKGHFFKTQMLVTQFETLQEPGADETDVLVVDID-- 144 (163)
T ss_pred ecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHh------ccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCC--
Confidence 5555667777776 33467779999999999999744 3333211 233345688887644 567774
Q ss_pred cCHHHHHH-HHhhc
Q 024315 256 FELAETWR-ITKWL 268 (269)
Q Consensus 256 ~~~~~~~~-i~~~~ 268 (269)
.++++++. +.+||
T Consensus 145 ~~~~~~~~~~~~~~ 158 (163)
T PRK11545 145 QPLEGVVASTIEVI 158 (163)
T ss_pred CCHHHHHHHHHHHH
Confidence 45666655 55554
No 219
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.46 E-value=4e-13 Score=119.82 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=97.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecCc---------ccccC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRH---------GLNRD 148 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~~---------~l~~~ 148 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||++.|+|.+.+. .+|.|.++|.++.. .++..
T Consensus 8 ~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK09984 8 EKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN 87 (262)
T ss_pred eeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhh
Confidence 45666655566778899999999999999999999999999999988542 25899999977531 01111
Q ss_pred CCCChhhH--------HHHHH--------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHh
Q 024315 149 LSFKAEDR--------VENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSM 195 (269)
Q Consensus 149 ~g~~~~~~--------~~~~~--------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~l 195 (269)
++|.+++. .+++. ....+...+...++.. .+..+++++++| ..++++
T Consensus 88 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 167 (262)
T PRK09984 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARAL 167 (262)
T ss_pred eEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHH
Confidence 22222210 11110 0011222333334421 233456666666 688999
Q ss_pred CCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 196 l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+.++++ +++|+|+..++....+.+.+.+++
T Consensus 168 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 197 (262)
T PRK09984 168 MQQAKV--ILADEPIASLDPESARIVMDTLRD 197 (262)
T ss_pred hcCCCE--EEecCccccCCHHHHHHHHHHHHH
Confidence 999998 999999999999988887766553
No 220
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.8e-13 Score=118.54 Aligned_cols=146 Identities=20% Similarity=0.147 Sum_probs=98.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+. + +..|.|.++|.++.. .++..+
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 88 (251)
T PRK14244 9 KNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKV 88 (251)
T ss_pred eeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhE
Confidence 456666655667888999999999999999999999999999999874 1 358999999977531 112223
Q ss_pred CCChhhH-------HHHHHH-------------H-HHHHHHHHhCCcce--------eeccCChHHHHH-HHHHHhCCCC
Q 024315 150 SFKAEDR-------VENIRR-------------I-GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 150 g~~~~~~-------~~~~~~-------------l-~~~a~~~~~~g~~~--------iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+|.+++. .+++.. . ..+...+...++.. -....++++++| ..+++++.++
T Consensus 89 ~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 168 (251)
T PRK14244 89 GMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKP 168 (251)
T ss_pred EEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 3322211 111110 0 01122334444421 123346666666 6899999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|+|+..++....+.+++.+++
T Consensus 169 ~l--lllDEPt~~LD~~~~~~l~~~l~~ 194 (251)
T PRK14244 169 TM--LLMDEPCSALDPVATNVIENLIQE 194 (251)
T ss_pred CE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 98 999999999999888887766654
No 221
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.45 E-value=4.3e-13 Score=112.44 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=101.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~ 159 (269)
.++...++.-.....+|+..++|.+|.|+|.|||||||+++++.= |..|..|.|.++|..++---.++-.+.+.++.+.
T Consensus 10 ~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~-LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~ 88 (256)
T COG4598 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF-LEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQL 88 (256)
T ss_pred hHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh-hcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence 456666777777889999999999999999999999999999975 5578899999999988631111111222221111
Q ss_pred HHHHHHHHHHHHhCCc------------------------------------------ceeeccCChHHHHH-HHHHHhC
Q 024315 160 IRRIGEVAKLFADAGV------------------------------------------ICIACLISPYRKDR-DACRSML 196 (269)
Q Consensus 160 ~~~l~~~a~~~~~~g~------------------------------------------~~iv~~~~~~~~~r-~~ar~ll 196 (269)
-+.-.++.+.|+.+++ ..+..+.++++++| .++|++.
T Consensus 89 ~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa 168 (256)
T COG4598 89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA 168 (256)
T ss_pred HHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh
Confidence 0001122233333222 12355667888888 5889888
Q ss_pred CCCCccEEEEeCChhHHHhcChhhH----HHHHhcCccc
Q 024315 197 PEGDFIEVFMDVPLQVCEARDPKGL----YKLAREGKVK 231 (269)
Q Consensus 197 ~~~~~~~i~ld~p~~~l~~R~~k~l----~~~~r~g~~~ 231 (269)
-+|.+ +++|+|+..+++...-.. .+.+.+|+.+
T Consensus 169 meP~v--mLFDEPTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 169 MEPEV--MLFDEPTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred cCCce--EeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 88888 899999999998877653 3556667654
No 222
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.4e-13 Score=118.75 Aligned_cols=146 Identities=20% Similarity=0.224 Sum_probs=96.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC----ccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG----KLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~----~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+..++.+.+|++++|+|+||||||||++.|++.+.+.. .|.|.++|.++.. .++..+
T Consensus 8 ~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i 87 (251)
T PRK14249 8 RGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRV 87 (251)
T ss_pred EEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceE
Confidence 456666655567789999999999999999999999999999999885321 5899999987631 112223
Q ss_pred CCChhhH-------HHHHHH------------HHH-HHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR------------IGE-VAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~------------l~~-~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. ..+ ....+...++ ...+...++++++| ..+++++.+++
T Consensus 88 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 167 (251)
T PRK14249 88 GMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPE 167 (251)
T ss_pred EEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3322211 111100 000 1111222222 11233456666666 69999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 168 l--llLDEPt~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14249 168 V--ILMDEPCSALDPVSTMRIEELMQE 192 (251)
T ss_pred E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999988887766654
No 223
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=4.3e-13 Score=116.01 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=94.0
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK 152 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~ 152 (269)
+++..++.... ++++++++ ++++|+|+||||||||++.|++.+ .+.+|.+.++|.++.. ..+..++|.
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 45555655544 89999999 999999999999999999999988 4668999999976531 011122222
Q ss_pred hhh--------HHHHHH----------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 153 AED--------RVENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 153 ~~~--------~~~~~~----------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
+++ ..+++. ........+...++.. .+...++++++| ..+++++.++++ +++|+|
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP 158 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL--LLLDEP 158 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 211 011111 0011223344444422 233456666666 689999999999 999999
Q ss_pred hhHHHhcChhhHHHHHh
Q 024315 210 LQVCEARDPKGLYKLAR 226 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r 226 (269)
+..++....+.+++.++
T Consensus 159 t~~LD~~~~~~l~~~l~ 175 (214)
T cd03297 159 FSALDRALRLQLLPELK 175 (214)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 99999998888776654
No 224
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=7e-13 Score=118.58 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=96.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||+++|++.+.. +.+|.|.++|.++.. .++..+
T Consensus 14 ~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 93 (264)
T PRK14243 14 ENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI 93 (264)
T ss_pred eeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhE
Confidence 4566666555667889999999999999999999999999999998742 357999999977631 112222
Q ss_pred CCChhh-------HHHHHHH----------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 150 SFKAED-------RVENIRR----------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 150 g~~~~~-------~~~~~~~----------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+|..++ ..+++.. . ......+...++. ..+...++++++| ..+++++.++++
T Consensus 94 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l- 172 (264)
T PRK14243 94 GMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEV- 172 (264)
T ss_pred EEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence 332221 1111110 0 0111112222221 1223356666666 699999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHhc
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+.+.+++
T Consensus 173 -llLDEPt~~LD~~~~~~l~~~L~~ 196 (264)
T PRK14243 173 -ILMDEPCSALDPISTLRIEELMHE 196 (264)
T ss_pred -EEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999988887766543
No 225
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.8e-13 Score=118.52 Aligned_cols=146 Identities=20% Similarity=0.197 Sum_probs=96.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++.. ..+..+
T Consensus 8 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 87 (251)
T PRK14270 8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRV 87 (251)
T ss_pred EEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhhe
Confidence 4555555555567888999999999999999999999999999998753 257999999987632 112222
Q ss_pred CCChhhH-------HHHHHH---H----------HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR---I----------GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~---l----------~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. . ......+...++. ......++++++| ..+++++.+++
T Consensus 88 ~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 167 (251)
T PRK14270 88 GMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPD 167 (251)
T ss_pred EEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3222211 111110 0 0111223333321 1233446666666 68899999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++......+++.+++
T Consensus 168 l--lllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 168 V--ILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 8 999999999999888877766553
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.9e-13 Score=119.78 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=97.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||+++|+|.+.. + .+|.+.++|.++.. .++..+
T Consensus 24 ~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i 103 (274)
T PRK14265 24 EGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQV 103 (274)
T ss_pred eeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcE
Confidence 4666666555677889999999999999999999999999999998752 2 47999999987631 112223
Q ss_pred CCChhh-------HHHHHHH----------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 150 SFKAED-------RVENIRR----------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 150 g~~~~~-------~~~~~~~----------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+|.+++ ..+++.. . ......+...++ ...+...++++++| ..+++++.++++
T Consensus 104 ~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~l- 182 (274)
T PRK14265 104 GMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDV- 182 (274)
T ss_pred EEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCE-
Confidence 333322 1111110 0 001111222222 11223356666666 699999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHhc
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+++.+++
T Consensus 183 -llLDEPt~~LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 183 -LLMDEPCSALDPISTRQVEELCLE 206 (274)
T ss_pred -EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999998887766654
No 227
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.45 E-value=5.6e-13 Score=119.50 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=91.4
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR----- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~----- 156 (269)
....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. .++..++|..++.
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 55678899999999999999999999999999999987 4668999999987632 1122223222221
Q ss_pred -----HHHH----H---------HHHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -----VENI----R---------RIGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -----~~~~----~---------~l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+.+ . ........+...++. . .....++++++| ..+++++.++++ +++|+|+..
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~l--llLDEPt~~ 181 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKL--LILDEAVSN 181 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCE--EEEeCCCcc
Confidence 0000 0 001122333344442 1 223345666666 699999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++....+.+++.++
T Consensus 182 LD~~~~~~~~~~l~ 195 (268)
T PRK10419 182 LDLVLQAGVIRLLK 195 (268)
T ss_pred cCHHHHHHHHHHHH
Confidence 99887777665554
No 228
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.1e-13 Score=118.30 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=98.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--cC--CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WR--GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~~--~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++++.+|++++|+|+||||||||+++|+|... ++ .+|.+.++|.++.. ..+..+
T Consensus 7 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14245 7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNV 86 (250)
T ss_pred EEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhhe
Confidence 456666656667788999999999999999999999999999999631 22 47999999987642 112223
Q ss_pred CCChhhH-------HHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. . ......+...++. ..+...++++++| ..+++++.+++
T Consensus 87 ~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 166 (250)
T PRK14245 87 GMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPS 166 (250)
T ss_pred EEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3332221 111110 0 0112233333431 1133456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|||+..++....+.+.+.+++
T Consensus 167 l--llLDEPt~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14245 167 V--LLMDEPASALDPISTAKVEELIHE 191 (250)
T ss_pred E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999988887766654
No 229
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=2.1e-13 Score=112.35 Aligned_cols=119 Identities=23% Similarity=0.338 Sum_probs=86.4
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHH
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~ 161 (269)
+.+.+.........++.+.+|++++|+|+||||||||+++|.+.+. +..|.+.+++.++.. ....... .
T Consensus 5 ~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~-------~~~~~~~---~ 73 (157)
T cd00267 5 LSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAK-------LPLEELR---R 73 (157)
T ss_pred EEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEccc-------CCHHHHH---h
Confidence 4444434456778899999999999999999999999999999885 668999999987642 1110000 0
Q ss_pred HHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 162 RIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 162 ~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
. +..+.. .+.++++| ..+++++.++++ +.+|||+..++.+....+++.++
T Consensus 74 ---~---------i~~~~q-lS~G~~~r~~l~~~l~~~~~i--~ilDEp~~~lD~~~~~~l~~~l~ 124 (157)
T cd00267 74 ---R---------IGYVPQ-LSGGQRQRVALARALLLNPDL--LLLDEPTSGLDPASRERLLELLR 124 (157)
T ss_pred ---c---------eEEEee-CCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence 0 100111 44555555 688999999999 99999999999988887776655
No 230
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.3e-13 Score=119.24 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=98.1
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCCC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDLS 150 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~g 150 (269)
.....+......+..++.+.+|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++.. .++..++
T Consensus 13 ~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 92 (261)
T PRK14263 13 LDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG 92 (261)
T ss_pred eEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceE
Confidence 345555556677889999999999999999999999999999999854 258999999987632 1122233
Q ss_pred CChhhH-------HHHHHH----------H-HHHHHHHHhCCcce--------eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 151 FKAEDR-------VENIRR----------I-GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 151 ~~~~~~-------~~~~~~----------l-~~~a~~~~~~g~~~--------iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
|.+++. .+++.. . ..+...+...++.. .....++++++| ..+++++.++++
T Consensus 93 ~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~l-- 170 (261)
T PRK14263 93 MVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEV-- 170 (261)
T ss_pred EEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence 332221 111110 0 11223334444321 112345666666 689999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+.+.+++
T Consensus 171 lllDEPtsgLD~~~~~~l~~~l~~ 194 (261)
T PRK14263 171 LLLDEPCSALDPIATRRVEELMVE 194 (261)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999988887766654
No 231
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=3.5e-13 Score=131.00 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=100.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCcc-----cccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~~-----l~~~~g~~~ 153 (269)
.++++.+......+++++.+.+|++++|+|+||||||||+++|++.+++ +.+|.|.++|.++... .+..++|.+
T Consensus 9 ~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 88 (506)
T PRK13549 9 KNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIH 88 (506)
T ss_pred eeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEE
Confidence 4667776666678999999999999999999999999999999998854 3689999999876321 112233322
Q ss_pred hhH--------HHHHH--------------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 154 EDR--------VENIR--------------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 154 ~~~--------~~~~~--------------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
|+. .+.+. . ...+...+...++.. .+...++++++| ..+++++.++++ ++
T Consensus 89 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l--ll 166 (506)
T PRK13549 89 QELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL--LI 166 (506)
T ss_pred eccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 211 01000 0 011223344444422 234456777777 699999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|||+..++......+.+.++
T Consensus 167 LDEPt~~LD~~~~~~l~~~l~ 187 (506)
T PRK13549 167 LDEPTASLTESETAVLLDIIR 187 (506)
T ss_pred EeCCCCCCCHHHHHHHHHHHH
Confidence 999999999988877765543
No 232
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.45 E-value=3.3e-13 Score=131.38 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=100.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++.+.+......++++|.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++... .+..++|.++
T Consensus 15 ~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 93 (510)
T PRK15439 15 RSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQ 93 (510)
T ss_pred EeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 56777776666788999999999999999999999999999999988 46689999999776421 0112233332
Q ss_pred hH--------HHHHH-------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 155 DR--------VENIR-------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 155 ~~--------~~~~~-------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
+. .+.+. . -..+...+...++.. .+...++++++| ..+++++.++++ +++|||+..+
T Consensus 94 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l--llLDEPt~~L 171 (510)
T PRK15439 94 EPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI--LILDEPTASL 171 (510)
T ss_pred cCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECCCCCC
Confidence 21 11110 0 012223344444432 234456777777 699999999999 9999999999
Q ss_pred HhcChhhHHHHHh
Q 024315 214 EARDPKGLYKLAR 226 (269)
Q Consensus 214 ~~R~~k~l~~~~r 226 (269)
+....+.+++.++
T Consensus 172 D~~~~~~l~~~l~ 184 (510)
T PRK15439 172 TPAETERLFSRIR 184 (510)
T ss_pred CHHHHHHHHHHHH
Confidence 9998888776654
No 233
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=3.1e-13 Score=127.67 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=96.4
Q ss_pred CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----c----ccCCCCChhhH--
Q 024315 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRDLSFKAEDR-- 156 (269)
Q Consensus 87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l----~~~~g~~~~~~-- 156 (269)
..+...++++|++++|++++|+|+||||||||+++|++++ .+.+|.|.++|.++... + +..++|..|+.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3455688899999999999999999999999999999988 46789999999876421 1 12333333221
Q ss_pred ------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 157 ------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 157 ------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
.+++.. ..++...+...++.. .+..+++++++| ..+++++.++++ +++|||+..+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i--LLLDEPts~L 195 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI--LLMDEAFSAL 195 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCCccC
Confidence 111110 012223344445432 234457777777 689999999999 9999999999
Q ss_pred HhcChhhHHHHHh
Q 024315 214 EARDPKGLYKLAR 226 (269)
Q Consensus 214 ~~R~~k~l~~~~r 226 (269)
+...++.+++.++
T Consensus 196 D~~~r~~l~~~L~ 208 (400)
T PRK10070 196 DPLIRTEMQDELV 208 (400)
T ss_pred CHHHHHHHHHHHH
Confidence 9998888776554
No 234
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.45 E-value=5e-13 Score=117.96 Aligned_cols=145 Identities=18% Similarity=0.066 Sum_probs=94.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCc----cc-ccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH----GL-NRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~----~l-~~~~g~~~ 153 (269)
.++.+.+...+...++++.+++|++++|+|+||||||||+++|++.++ .+.+|.+.++|.++.. .. +..++|..
T Consensus 5 ~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (248)
T PRK09580 5 KDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84 (248)
T ss_pred EEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEe
Confidence 356666655567788999999999999999999999999999999852 4678999999976532 01 11233322
Q ss_pred hhHH--------HH-------HH---------H--HHH-HHHHHHhCCcc-----eeec-cCChHHHHH-HHHHHhCCCC
Q 024315 154 EDRV--------EN-------IR---------R--IGE-VAKLFADAGVI-----CIAC-LISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 154 ~~~~--------~~-------~~---------~--l~~-~a~~~~~~g~~-----~iv~-~~~~~~~~r-~~ar~ll~~~ 199 (269)
++.. .. +. . ... +...+...++. ..+. ..++++++| ..+++++.++
T Consensus 85 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 164 (248)
T PRK09580 85 QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP 164 (248)
T ss_pred cCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 2210 00 00 0 000 01111212221 1121 356666666 6999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++ +++|+|+..++....+.+.+.++
T Consensus 165 ~i--llLDEPt~~LD~~~~~~l~~~l~ 189 (248)
T PRK09580 165 EL--CILDESDSGLDIDALKIVADGVN 189 (248)
T ss_pred CE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 99 99999999999998888776443
No 235
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.2e-13 Score=120.28 Aligned_cols=146 Identities=15% Similarity=0.187 Sum_probs=99.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc-----ccccCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH-----GLNRDLS 150 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~-----~l~~~~g 150 (269)
.++.+.+......+++++++.+|++++|+|+||||||||+++|++.+++ +.+|.|.++|.++.. .++..++
T Consensus 25 ~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~ 104 (276)
T PRK14271 25 VNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVG 104 (276)
T ss_pred eeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheE
Confidence 5667776666677899999999999999999999999999999998854 358999999987632 1122233
Q ss_pred CChhhH-------HHHHHH------------H-HHHHHHHHhCCcce--------eeccCChHHHHH-HHHHHhCCCCCc
Q 024315 151 FKAEDR-------VENIRR------------I-GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 151 ~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~~--------iv~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
|.+++. .+++.. . ......+...++.. .+...++++++| ..+++++.++++
T Consensus 105 ~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~l 184 (276)
T PRK14271 105 MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184 (276)
T ss_pred EeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 333221 111110 0 00112233334321 123456666666 689999999998
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+++.+++
T Consensus 185 --llLDEPt~~LD~~~~~~l~~~L~~ 208 (276)
T PRK14271 185 --LLLDEPTSALDPTTTEKIEEFIRS 208 (276)
T ss_pred --EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999888887766553
No 236
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.4e-13 Score=118.62 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=96.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+.+ +.+|.+.++|.++.. .++..+
T Consensus 7 ~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14262 7 ENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKV 86 (250)
T ss_pred EeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhE
Confidence 4566665555567888999999999999999999999999999998753 257999999977531 112223
Q ss_pred CCChhhH-------HHHHHH------------HH-HHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR------------IG-EVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~------------l~-~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. .. .+...+...++. ......++++++| ..+++++.+++
T Consensus 87 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~ 166 (250)
T PRK14262 87 GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE 166 (250)
T ss_pred EEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCC
Confidence 3322211 111110 00 011122222321 1123345666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+.+.+++
T Consensus 167 l--lllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14262 167 V--ILLDEPTSALDPIATQRIEKLLEE 191 (250)
T ss_pred E--EEEeCCccccCHHHHHHHHHHHHH
Confidence 9 999999999999988777666543
No 237
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.45 E-value=7.1e-13 Score=118.16 Aligned_cols=144 Identities=23% Similarity=0.202 Sum_probs=95.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++.+.+......+.+++++++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++.. .++..++|.+++
T Consensus 6 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (258)
T PRK13548 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEVRLNGRPLADWSPAELARRRAVLPQH 84 (258)
T ss_pred EeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcccCCHHHhhhheEEEccC
Confidence 45666665556788899999999999999999999999999999987 4668999999986532 111112222211
Q ss_pred --------HHHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC------CCCCccEE
Q 024315 156 --------RVENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSML------PEGDFIEV 204 (269)
Q Consensus 156 --------~~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll------~~~~~~~i 204 (269)
..+++.. . ......+...++.. .+...++++++| ..+++++ .++++ +
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l--l 162 (258)
T PRK13548 85 SSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW--L 162 (258)
T ss_pred CcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE--E
Confidence 0111100 0 01122333334422 233456666666 6888888 47788 9
Q ss_pred EEeCChhHHHhcChhhHHHHHh
Q 024315 205 FMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++|+|+..++....+.+.+.++
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~ 184 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLAR 184 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHH
Confidence 9999999999988777665544
No 238
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.45 E-value=4.3e-13 Score=130.24 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=99.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++++.+......+++++.+.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++... .+..++|.+|
T Consensus 8 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 86 (501)
T PRK10762 8 KGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQ 86 (501)
T ss_pred eeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEEc
Confidence 466666666667889999999999999999999999999999999884 6689999999775310 1122233222
Q ss_pred hH--------HHHH---------------HH-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 155 DR--------VENI---------------RR-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 155 ~~--------~~~~---------------~~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
+. .+.+ .. ...+...+...++.. .+...|+++++| ..+++++.++++ ++
T Consensus 87 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--ll 164 (501)
T PRK10762 87 ELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV--II 164 (501)
T ss_pred chhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 11 0100 00 011223344444432 234456677776 689999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|||+..++....+.+++.++
T Consensus 165 LDEPt~~LD~~~~~~l~~~l~ 185 (501)
T PRK10762 165 MDEPTDALTDTETESLFRVIR 185 (501)
T ss_pred EeCCcCCCCHHHHHHHHHHHH
Confidence 999999999988888765544
No 239
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.45 E-value=4.2e-13 Score=131.59 Aligned_cols=143 Identities=19% Similarity=0.152 Sum_probs=97.3
Q ss_pred ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
|+++.+.. ....++.++.+++|+.++|+|+||||||||++.|+|.+ ++.+|.|.++|.++.. .+++.+++.+|+
T Consensus 327 ~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 405 (547)
T PRK10522 327 NVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVTAEQPEDYRKLFSAVFTD 405 (547)
T ss_pred EEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCCCCHHHHhhheEEEecC
Confidence 44444422 22456779999999999999999999999999999988 5679999999998763 344445555554
Q ss_pred HHHH---HH-----H-HHHHHHHHHhCCccee---------eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 156 RVEN---IR-----R-IGEVAKLFADAGVICI---------ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 156 ~~~~---~~-----~-l~~~a~~~~~~g~~~i---------v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
..-. ++ . -.+........+.... ....++++++| ..+|+++.++++ +.+|||++.++..
T Consensus 406 ~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i--lilDE~ts~LD~~ 483 (547)
T PRK10522 406 FHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI--LLLDEWAADQDPH 483 (547)
T ss_pred hhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHH
Confidence 3100 00 0 0011112222222111 23457777777 799999999999 9999999999998
Q ss_pred ChhhHHHHHh
Q 024315 217 DPKGLYKLAR 226 (269)
Q Consensus 217 ~~k~l~~~~r 226 (269)
..+.+++...
T Consensus 484 ~~~~i~~~l~ 493 (547)
T PRK10522 484 FRREFYQVLL 493 (547)
T ss_pred HHHHHHHHHH
Confidence 8887665543
No 240
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.45 E-value=3e-13 Score=133.61 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=92.8
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH----------
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR---------- 156 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~---------- 156 (269)
..++.++++++|+.++|+|+||||||||++.|.|.+ +|.+|.+.++|.++.. .+++.++|.+|+.
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N 428 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN 428 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence 356678999999999999999999999999999988 5678999999987653 2233333333321
Q ss_pred -------------HHHHHHHHHHHHHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 157 -------------VENIRRIGEVAKLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 157 -------------~~~~~~l~~~a~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
....+... ....+. ..|+... ....++++++| ..+|+++.++++ +.+|||+..++..
T Consensus 429 i~~~~~~~~d~~i~~al~~~~-l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i--liLDEpts~LD~~ 505 (588)
T PRK13657 429 IRVGRPDATDEEMRAAAERAQ-AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI--LILDEATSALDVE 505 (588)
T ss_pred HhcCCCCCCHHHHHHHHHHhC-HHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHH
Confidence 11111110 111111 1233222 23457777777 799999999999 9999999999999
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
..+.+++.+++
T Consensus 506 t~~~i~~~l~~ 516 (588)
T PRK13657 506 TEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHHH
Confidence 99888876654
No 241
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.9e-13 Score=120.08 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=96.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......++.++++.+|++++|+|+||||||||+++|+|.+. + +..|.|.++|.++.. .++..+
T Consensus 28 ~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 107 (271)
T PRK14238 28 QNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNV 107 (271)
T ss_pred eeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhE
Confidence 466666655556788899999999999999999999999999999875 2 468999999987631 112223
Q ss_pred CCChhh-------HHHHHHH------------HHH-HHHHHHhCC----c----ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRR------------IGE-VAKLFADAG----V----ICIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~------------l~~-~a~~~~~~g----~----~~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+++.. ..+ +...+...+ + .......++++++| ..+++++.+++
T Consensus 108 ~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~ 187 (271)
T PRK14238 108 GMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPD 187 (271)
T ss_pred EEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 332222 1111110 000 111111111 1 11223346666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 188 l--llLDEPt~~LD~~~~~~l~~~l~~ 212 (271)
T PRK14238 188 V--ILMDEPTSALDPISTLKVEELVQE 212 (271)
T ss_pred E--EEEeCCCCcCCHHHHHHHHHHHHH
Confidence 8 999999999999998887766543
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.45 E-value=3e-13 Score=118.72 Aligned_cols=136 Identities=20% Similarity=0.242 Sum_probs=90.0
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------H
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------V 157 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~ 157 (269)
....+.+++++.+|++++|+|+||||||||++.|+|.++ +.+|.|.++|.++.. .++..++|.+++. .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 345678899999999999999999999999999999884 668999999976531 1112223222221 0
Q ss_pred HHHH---------HHHHH------HHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 158 ENIR---------RIGEV------AKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 158 ~~~~---------~l~~~------a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
+++. .+.+. ...+... +.. ..+...++++++| ..+++++.++++ +++|+|+..++.
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEP~~~LD~ 171 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI--LIFDEATSALDY 171 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCcccCCH
Confidence 1100 00000 0011111 111 1223456666666 689999999998 999999999999
Q ss_pred cChhhHHHHHhc
Q 024315 216 RDPKGLYKLARE 227 (269)
Q Consensus 216 R~~k~l~~~~r~ 227 (269)
...+.+++.+++
T Consensus 172 ~~~~~l~~~l~~ 183 (237)
T cd03252 172 ESEHAIMRNMHD 183 (237)
T ss_pred HHHHHHHHHHHH
Confidence 998887776654
No 243
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.2e-13 Score=128.74 Aligned_cols=130 Identities=24% Similarity=0.275 Sum_probs=87.0
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCC----------------
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLS---------------- 150 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g---------------- 150 (269)
+.++.+|++.+||.++|+|+|||||||+++.|.|.+ ++.+|.+.++|.++.+ .++..+.
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 446679999999999999999999999999999988 5779999999987762 0111111
Q ss_pred -------CChhhHHHHHHHHHHHHHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 151 -------FKAEDRVENIRRIGEVAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 151 -------~~~~~~~~~~~~l~~~a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
-++++..+..++++ ..+..... |+. +-....|+++++| ..+|.++.+.++ +.+|||++.+|+.
T Consensus 432 L~lA~~~AsDEel~~aL~qvg-L~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl--~lLDEPTegLD~~ 508 (573)
T COG4987 432 LRLANPDASDEELWAALQQVG-LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL--WLLDEPTEGLDPI 508 (573)
T ss_pred HhhcCCCCCHHHHHHHHHHcC-HHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe--EEecCCcccCChh
Confidence 11122222111111 11111111 221 1122346677766 799999999888 8999999999998
Q ss_pred ChhhHHHH
Q 024315 217 DPKGLYKL 224 (269)
Q Consensus 217 ~~k~l~~~ 224 (269)
....+.+.
T Consensus 509 TE~~vL~l 516 (573)
T COG4987 509 TERQVLAL 516 (573)
T ss_pred hHHHHHHH
Confidence 88775544
No 244
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=2.8e-13 Score=122.71 Aligned_cols=133 Identities=16% Similarity=0.101 Sum_probs=91.8
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCChhhH------
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFKAEDR------ 156 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~~~~~------ 156 (269)
..+.+++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. .++..++|..++.
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 567889999999999999999999999999999988 4678999999987631 1222334333321
Q ss_pred ---HHHHHH------------HHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 157 ---VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 157 ---~~~~~~------------l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
.+.+.. ...+...+...++. ..+..+++++++| ..+++++.++++ +++|+|+..++.
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~i--llLDEPt~gLD~ 177 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEV--LVLDEPTAGLDP 177 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCE--EEEECCccCCCH
Confidence 011100 01122333333442 1223456666666 689999999999 999999999998
Q ss_pred cChhhHHHHHh
Q 024315 216 RDPKGLYKLAR 226 (269)
Q Consensus 216 R~~k~l~~~~r 226 (269)
...+.+.+.++
T Consensus 178 ~~~~~l~~~l~ 188 (288)
T PRK13643 178 KARIEMMQLFE 188 (288)
T ss_pred HHHHHHHHHHH
Confidence 88777665543
No 245
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.44 E-value=2.6e-13 Score=133.38 Aligned_cols=133 Identities=21% Similarity=0.296 Sum_probs=92.2
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHHH
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VENI 160 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~~ 160 (269)
.++.++.+++|+.++|+|+||||||||++.|.|.+ .+.+|.|.++|.++.+ .++..++|.+|+. ++++
T Consensus 348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni 426 (571)
T TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNI 426 (571)
T ss_pred ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHH
Confidence 45678999999999999999999999999999988 5778999999987642 2222233333321 1111
Q ss_pred H-------------HHHHH---HHHHHh--CCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 161 R-------------RIGEV---AKLFAD--AGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 161 ~-------------~l~~~---a~~~~~--~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
. ...+. ...+.. .|+.. -....++++++| ..+|+++.++++ +.+|||++.+|...
T Consensus 427 ~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i--llLDEpts~LD~~~ 504 (571)
T TIGR02203 427 AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI--LILDEATSALDNES 504 (571)
T ss_pred hcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCHHH
Confidence 1 10010 011111 12221 123457888887 799999999999 99999999999999
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+++.+++
T Consensus 505 ~~~i~~~L~~ 514 (571)
T TIGR02203 505 ERLVQAALER 514 (571)
T ss_pred HHHHHHHHHH
Confidence 9988776654
No 246
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=9e-13 Score=116.76 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=96.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cC---CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~---~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++++.+......+.+++++.+|++++|+|+||||||||+++|++.++ .+ .+|.|.++|.++.. .++..+
T Consensus 9 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 88 (252)
T PRK14255 9 SDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQV 88 (252)
T ss_pred EeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeE
Confidence 466666666667888999999999999999999999999999999764 23 37999999987631 112223
Q ss_pred CCChhh-------HHHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+.+.. . ......+...+. ...+...++++++| ..+++++.+++
T Consensus 89 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 168 (252)
T PRK14255 89 GMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPD 168 (252)
T ss_pred EEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 333322 1111110 0 001111222221 11223346666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+.+.+++
T Consensus 169 l--lllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14255 169 V--ILLDEPTSALDPISSTQIENMLLE 193 (252)
T ss_pred E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 8 999999999999988887766543
No 247
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=7e-13 Score=117.38 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=96.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC----CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~----~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++.+++|++++|+|+||||||||+++|+|.+.+. .+|.|.++|.++.. ..+..+
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 87 (252)
T PRK14272 8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRV 87 (252)
T ss_pred eeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhcee
Confidence 45666665566788999999999999999999999999999999988532 27999999987631 112223
Q ss_pred CCChhhH--------HHHHHH------------HHHHH-HHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCC
Q 024315 150 SFKAEDR--------VENIRR------------IGEVA-KLFADAGV--------ICIACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 150 g~~~~~~--------~~~~~~------------l~~~a-~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+|.+++. .+++.. ..+.+ ..+...+. ...+...++++++| ..+++++.++
T Consensus 88 ~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 167 (252)
T PRK14272 88 GMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEP 167 (252)
T ss_pred EEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3222211 111110 00001 11111211 11233456666666 6899999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|+|+..++....+.+.+.+++
T Consensus 168 ~l--lllDEP~~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14272 168 EI--LLMDEPTSALDPASTARIEDLMTD 193 (252)
T ss_pred CE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 99 999999999999888887766554
No 248
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=5.9e-13 Score=116.60 Aligned_cols=142 Identities=21% Similarity=0.294 Sum_probs=93.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhh--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED-- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~-- 155 (269)
.++++.+.... ..+++.+.+|++++|+|+||||||||++.|+|.+ .+.+|.+.++|.++... .+..++|.+++
T Consensus 5 ~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 81 (232)
T PRK10771 5 TDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHTTTPPSRRPVSMLFQENN 81 (232)
T ss_pred EEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecCcCChhhccEEEEecccc
Confidence 35555554332 3689999999999999999999999999999988 46689999999875421 01112221111
Q ss_pred ------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 156 ------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 156 ------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
..+++.. -..+...+...++.. .+...++++++| ..+++++.++++ +++|+|+..
T Consensus 82 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEP~~g 159 (232)
T PRK10771 82 LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI--LLLDEPFSA 159 (232)
T ss_pred cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence 0111110 001222333334322 233456666666 688999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++....+.+.+.++
T Consensus 160 LD~~~~~~~~~~l~ 173 (232)
T PRK10771 160 LDPALRQEMLTLVS 173 (232)
T ss_pred CCHHHHHHHHHHHH
Confidence 99998887776554
No 249
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.44 E-value=2.4e-13 Score=116.95 Aligned_cols=141 Identities=21% Similarity=0.159 Sum_probs=94.9
Q ss_pred ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
++.+.+.. ....++.++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. ..+..++|.++
T Consensus 11 ~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 89 (207)
T cd03369 11 NLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKIEIDGIDISTIPLEDLRSSLTIIPQ 89 (207)
T ss_pred EEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEhHHCCHHHHHhhEEEEec
Confidence 44444432 24678889999999999999999999999999999987 4678999999987632 11222333333
Q ss_pred hH-------HHHHHHH-----HHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315 155 DR-------VENIRRI-----GEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (269)
Q Consensus 155 ~~-------~~~~~~l-----~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l 221 (269)
+. .+++... .++...+. ........++++++| ..+++++.++++ +++|+|+..++....+.+
T Consensus 90 ~~~~~~~tv~~~l~~~~~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEP~~~LD~~~~~~l 164 (207)
T cd03369 90 DPTLFSGTIRSNLDPFDEYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRV--LVLDEATASIDYATDALI 164 (207)
T ss_pred CCcccCccHHHHhcccCCCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCcccCCHHHHHHH
Confidence 21 1111100 01111111 112233456666666 689999999999 999999999999998888
Q ss_pred HHHHhc
Q 024315 222 YKLARE 227 (269)
Q Consensus 222 ~~~~r~ 227 (269)
++.+++
T Consensus 165 ~~~l~~ 170 (207)
T cd03369 165 QKTIRE 170 (207)
T ss_pred HHHHHH
Confidence 777664
No 250
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.44 E-value=8.1e-13 Score=117.51 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=92.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCCh---hhH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA---EDR 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~---~~~ 156 (269)
.++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.+++.....-+..+..+.. ...
T Consensus 8 ~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~ 86 (251)
T PRK09544 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVIKRNGKLRIGYVPQKLYLDTTLPLTV 86 (251)
T ss_pred eceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCccCEEEeccccccccccChhH
Confidence 45666655555678889999999999999999999999999999988 46689999887321100111101100 000
Q ss_pred HHHHHH-----HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 157 VENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 157 ~~~~~~-----l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.+.... ...+...+...++.. .+...++++++| ..+++++.++++ +++|+|+..++....+.+.+.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llLDEPt~~LD~~~~~~l~~~L~ 164 (251)
T PRK09544 87 NRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL--LVLDEPTQGVDVNGQVALYDLID 164 (251)
T ss_pred HHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence 111100 011222333334322 233456666666 689999999999 99999999999988887766554
No 251
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=3e-13 Score=122.44 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=95.5
Q ss_pred cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---------cc
Q 024315 80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---------GL 145 (269)
Q Consensus 80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---------~l 145 (269)
.++.+.+.. +...+.+++.+++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++.. .+
T Consensus 10 ~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~ 88 (289)
T PRK13645 10 DNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIKEVKRL 88 (289)
T ss_pred EEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccccHHHH
Confidence 345555533 235678899999999999999999999999999999884 668999999976531 12
Q ss_pred ccCCCCChhhH---------HHHHHH-----------H-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCC
Q 024315 146 NRDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPE 198 (269)
Q Consensus 146 ~~~~g~~~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~ 198 (269)
+..++|.+++. .+++.. . ..+..++...++. . .+...++++++| ..+++++.+
T Consensus 89 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~ 168 (289)
T PRK13645 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMD 168 (289)
T ss_pred hccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 22334433321 111110 0 0111223333331 1 123456666666 689999999
Q ss_pred CCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++ +++|+|+..++....+.+++.++
T Consensus 169 p~l--LlLDEPt~~LD~~~~~~l~~~l~ 194 (289)
T PRK13645 169 GNT--LVLDEPTGGLDPKGEEDFINLFE 194 (289)
T ss_pred CCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 999 99999999999998887765543
No 252
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.44 E-value=4.3e-13 Score=123.86 Aligned_cols=137 Identities=19% Similarity=0.172 Sum_probs=94.4
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecCc----c---cc-cCCCCChhhHH
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRH----G---LN-RDLSFKAEDRV 157 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~~----~---l~-~~~g~~~~~~~ 157 (269)
.+...+++||++++|++++|+|+||||||||+++|++++++. .+|.|.++|.++.. . ++ +.++|..|+..
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 366788999999999999999999999999999999988532 28999999988642 1 11 23444433310
Q ss_pred ----------H----HHHH---------HHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 158 ----------E----NIRR---------IGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 158 ----------~----~~~~---------l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+ .+.. .......+...++.. ....+++++++| .++++++.++++ +++
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~l--lil 185 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL--LIA 185 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 1 0000 011222333334321 233456777777 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++...++.+.+.++
T Consensus 186 DEPts~LD~~~~~~i~~lL~ 205 (330)
T PRK09473 186 DEPTTALDVTVQAQIMTLLN 205 (330)
T ss_pred eCCCccCCHHHHHHHHHHHH
Confidence 99999999988887665443
No 253
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=6.2e-13 Score=121.46 Aligned_cols=146 Identities=19% Similarity=0.156 Sum_probs=97.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++.. .++..+
T Consensus 49 ~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i 128 (305)
T PRK14264 49 EDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRV 128 (305)
T ss_pred EEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhce
Confidence 4556555555677888999999999999999999999999999998752 468999999987642 112233
Q ss_pred CCChhhHH-------HHHHH-------------------------HHHHHHHHHhCCc--------ceeeccCChHHHHH
Q 024315 150 SFKAEDRV-------ENIRR-------------------------IGEVAKLFADAGV--------ICIACLISPYRKDR 189 (269)
Q Consensus 150 g~~~~~~~-------~~~~~-------------------------l~~~a~~~~~~g~--------~~iv~~~~~~~~~r 189 (269)
+|.+++.. +++.. ...+...+...++ ......+++++++|
T Consensus 129 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 208 (305)
T PRK14264 129 GMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQR 208 (305)
T ss_pred EEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHH
Confidence 43333210 11100 0001111222222 11123356666666
Q ss_pred -HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 190 -DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 190 -~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
..+++++.++++ +++|+|+..++....+.+.+.++.
T Consensus 209 v~LAraL~~~p~l--LLLDEPtsgLD~~~~~~l~~~L~~ 245 (305)
T PRK14264 209 LCIARCLAVDPEV--ILMDEPASALDPIATSKIEDLIEE 245 (305)
T ss_pred HHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 689999999999 999999999999888877766553
No 254
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1e-12 Score=116.26 Aligned_cols=146 Identities=17% Similarity=0.154 Sum_probs=96.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cC---CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~---~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++.+++|++++|+|+||||||||+++|+|.+. .+ .+|.|.++|.++.. .++..+
T Consensus 9 ~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 88 (252)
T PRK14239 9 SDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEI 88 (252)
T ss_pred EeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcE
Confidence 456666555556788899999999999999999999999999999753 23 37999999987631 112223
Q ss_pred CCChhh-------HHHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+++.. . ......+...++ ...+...++++++| ..+++++.+++
T Consensus 89 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 168 (252)
T PRK14239 89 GMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPK 168 (252)
T ss_pred EEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 333221 1111110 0 011112222222 11223346666666 68899999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 169 l--lllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14239 169 I--ILLDEPTSALDPISAGKIEETLLG 193 (252)
T ss_pred E--EEEcCCccccCHHHHHHHHHHHHH
Confidence 8 999999999999988887766654
No 255
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.44 E-value=5.5e-13 Score=131.06 Aligned_cols=131 Identities=17% Similarity=0.147 Sum_probs=93.1
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH---HHHH--
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV---ENIR-- 161 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~---~~~~-- 161 (269)
..++.++++++|++++|+|+||||||||++.|+|.+ ++.+|.|.++|.++.. .++..+++..|+.. ..++
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 345678999999999999999999999999999988 5779999999998863 23344444444321 0000
Q ss_pred -----HHHHHHHHHHhCCccee----------eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 162 -----RIGEVAKLFADAGVICI----------ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 162 -----~l~~~a~~~~~~g~~~i----------v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
.-.++...+...++... ....++++++| ..+|+++.++++ +.+|||+..+|....+.+++.
T Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i--lilDE~ts~LD~~~~~~i~~~ 512 (555)
T TIGR01194 436 EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI--LLFDEWAADQDPAFKRFFYEE 512 (555)
T ss_pred cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHH
Confidence 00111222333333221 13457777777 799999999999 999999999999998887654
No 256
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=7.3e-13 Score=117.14 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=96.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc-----ccccCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH-----GLNRDLS 150 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~-----~l~~~~g 150 (269)
.++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+.+ +.+|.+.++|.++.. .++..++
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 86 (249)
T PRK14253 7 ENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVG 86 (249)
T ss_pred eccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhhee
Confidence 4566666566678999999999999999999999999999999998753 247999999976631 1122233
Q ss_pred CChhhH-------HHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCc
Q 024315 151 FKAEDR-------VENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 151 ~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
|.+++. .+++.. . ..+...+...++. ......++++++| ..+++++.++++
T Consensus 87 ~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 166 (249)
T PRK14253 87 MVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDV 166 (249)
T ss_pred EEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 332221 111110 0 0011112222221 1123345666666 689999999998
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+++.+++
T Consensus 167 --lllDEP~~~LD~~~~~~l~~~l~~ 190 (249)
T PRK14253 167 --ILMDEPTSALDPIATHKIEELMEE 190 (249)
T ss_pred --EEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999888777766554
No 257
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.44 E-value=3.7e-13 Score=117.29 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=94.7
Q ss_pred cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315 80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~ 152 (269)
.++.+.+.. ....+.+++.+.+|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++.. ..+..++|.
T Consensus 15 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 93 (226)
T cd03248 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQVLLDGKPISQYEHKYLHSKVSLV 93 (226)
T ss_pred EEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence 345555432 34678889999999999999999999999999999988 4668999999976531 111222322
Q ss_pred hhhHH-------HHHH---------HHHH------HHHHHHhC--Ccce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 153 AEDRV-------ENIR---------RIGE------VAKLFADA--GVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 153 ~~~~~-------~~~~---------~l~~------~a~~~~~~--g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
+++.. +++. .+.. ....+... ++.. .+...++++++| ..+++++.++++
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~l-- 171 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV-- 171 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE--
Confidence 22210 1000 0000 01111111 2221 233456666666 699999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+++.+++
T Consensus 172 lllDEPt~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 172 LILDEATSALDAESEQQVQQALYD 195 (226)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999988887776654
No 258
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=4.6e-13 Score=122.42 Aligned_cols=144 Identities=21% Similarity=0.167 Sum_probs=97.2
Q ss_pred cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC------------
Q 024315 80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR------------ 142 (269)
Q Consensus 80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~------------ 142 (269)
.++.+.+.. ....+++++.+++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.+..
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (305)
T PRK13651 6 KNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTIEWIFKDEKNKKKTKEKEKVL 84 (305)
T ss_pred EEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEeceecccccccccccccc
Confidence 355555532 23677889999999999999999999999999999988 466899999875431
Q ss_pred ----------------cccccCCCCChhhH---------HHHHHH------------HHHHHHHHHhCCcc-e----eec
Q 024315 143 ----------------HGLNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-C----IAC 180 (269)
Q Consensus 143 ----------------~~l~~~~g~~~~~~---------~~~~~~------------l~~~a~~~~~~g~~-~----iv~ 180 (269)
..++..++|.+|+. .+.+.. ..++...+...++. . .+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 164 (305)
T PRK13651 85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPF 164 (305)
T ss_pred cccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence 01122344444321 111110 01223344444552 2 233
Q ss_pred cCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 181 LISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 181 ~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.+++++++| ..++.++.++++ +++|+|+..++....+.+.+.++
T Consensus 165 ~LSgGqkqrvalA~aL~~~P~l--LlLDEPt~~LD~~~~~~l~~~l~ 209 (305)
T PRK13651 165 ELSGGQKRRVALAGILAMEPDF--LVFDEPTAGLDPQGVKEILEIFD 209 (305)
T ss_pred hCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHHHH
Confidence 456677776 689999999999 99999999999988877766554
No 259
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.43 E-value=8.2e-13 Score=115.39 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=98.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC-----cccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-----HGLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~-----~~l~~~~g~~~~ 154 (269)
.++++.+......+..+.++++|+-++|+|+||||||||++.+++.++ +++|.+.+-|.... ..+++.+|++..
T Consensus 35 ~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-pssg~~~~~G~~~G~~~~~~elrk~IG~vS~ 113 (257)
T COG1119 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGETIFELRKRIGLVSS 113 (257)
T ss_pred cceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-CCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence 466777777778888999999999999999999999999999999885 55777777776554 245666676665
Q ss_pred hHHHHHHH---------------------------HHHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCcc
Q 024315 155 DRVENIRR---------------------------IGEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 155 ~~~~~~~~---------------------------l~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+....+.. ..+...++...+...+ ....+-++++| -++|+++.+|++
T Consensus 114 ~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~L- 192 (257)
T COG1119 114 ELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPEL- 192 (257)
T ss_pred HHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCE-
Confidence 44322111 1112222333333222 12234455555 499999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHH
Q 024315 203 EVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
+++|||++.++--.+..+.+.
T Consensus 193 -LiLDEP~~GLDl~~re~ll~~ 213 (257)
T COG1119 193 -LILDEPAQGLDLIAREQLLNR 213 (257)
T ss_pred -EEecCccccCChHHHHHHHHH
Confidence 999999999998777665544
No 260
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.43 E-value=3.8e-13 Score=130.15 Aligned_cols=144 Identities=19% Similarity=0.169 Sum_probs=98.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
.++++.+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++.. ..+..+++..++
T Consensus 7 ~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~ 85 (490)
T PRK10938 7 SQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGERQSQFSHITRLSFEQLQKLVSDEWQR 85 (490)
T ss_pred EeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceEEECCcccccCCHHHHHHHhceeccC
Confidence 46677776556788999999999999999999999999999999988 4668999998765431 111122332221
Q ss_pred H----------------HHHHH----HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 156 R----------------VENIR----RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 156 ~----------------~~~~~----~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
. .+.+. .-..+...+...++.. .+...|+++++| ..+++++.++++ +++|||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt 163 (490)
T PRK10938 86 NNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL--LILDEPF 163 (490)
T ss_pred cchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEcCCc
Confidence 0 01100 0011223344444422 234456777777 699999999999 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..++....+.+.+.++
T Consensus 164 ~~LD~~~~~~l~~~l~ 179 (490)
T PRK10938 164 DGLDVASRQQLAELLA 179 (490)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999998888765554
No 261
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.43 E-value=3.7e-13 Score=144.57 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=101.4
Q ss_pred eEEeeCceee--------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC------------------------
Q 024315 82 ILWHKNSVDK--------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR------------------------ 129 (269)
Q Consensus 82 ~~~~~~~v~~--------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~------------------------ 129 (269)
+++.++.|+| .++.+|++++|+.++|+|+|||||||+++.|+|++.+.
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 4555555544 45568999999999999999999999999999998641
Q ss_pred -----------------------------CccEEEECCeecCc----ccccCCCCChhhH-------HHHHHHH------
Q 024315 130 -----------------------------GKLTYILDGDNCRH----GLNRDLSFKAEDR-------VENIRRI------ 163 (269)
Q Consensus 130 -----------------------------~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~~~~l------ 163 (269)
.+|.|++||.+++. .++..++|.+|+- ++++..-
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ 1325 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATR 1325 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCH
Confidence 58999999999863 4566666666542 1222110
Q ss_pred HHHHHHHHh-----------CCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 164 GEVAKLFAD-----------AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 164 ~~~a~~~~~-----------~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.++...... .|+... ...++++++|| .+||+++.++++ +++|||++.+|....+.+.+.+.+
T Consensus 1326 eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~I--LLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1326 EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKI--LLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHHHHHHHHHHHH
Confidence 011111111 122222 23457788888 799999999999 999999999999888887766554
No 262
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.43 E-value=4.1e-13 Score=121.04 Aligned_cols=143 Identities=18% Similarity=0.242 Sum_probs=95.6
Q ss_pred ceEEee--CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~--~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
++.+.+ ......+++++.+.+|++++|+|+||||||||+++|.+.++ .+|.|+++|.++.. .+++.++|.++
T Consensus 7 nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q 84 (275)
T cd03289 7 DLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQ 84 (275)
T ss_pred EEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECC
Confidence 444444 23345788899999999999999999999999999999985 47999999987642 22333343333
Q ss_pred hH-------HHHHHHH-----HHHHHHHHhCCccee----e-----------ccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 155 DR-------VENIRRI-----GEVAKLFADAGVICI----A-----------CLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 155 ~~-------~~~~~~l-----~~~a~~~~~~g~~~i----v-----------~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+. .+++... .++...+...++... . ...++++++| ..+|+++.++++ +++
T Consensus 85 ~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i--lll 162 (275)
T cd03289 85 KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI--LLL 162 (275)
T ss_pred CcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 22 1111100 011112222232111 1 1245666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHhc
Q 024315 207 DVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r~ 227 (269)
|+|+..++....+.+++.+++
T Consensus 163 DEpts~LD~~~~~~l~~~l~~ 183 (275)
T cd03289 163 DEPSAHLDPITYQVIRKTLKQ 183 (275)
T ss_pred ECccccCCHHHHHHHHHHHHH
Confidence 999999999988888777664
No 263
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=3e-13 Score=118.54 Aligned_cols=144 Identities=21% Similarity=0.234 Sum_probs=92.3
Q ss_pred ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
++.+.+. .....+..++.+.+|++++|+|+||||||||+++|+|.+ ++.+|.|.++|.++.. .++..++|.+++
T Consensus 5 ~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~ 83 (236)
T cd03253 5 NVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIREVTLDSLRRAIGVVPQD 83 (236)
T ss_pred EEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhhhCCHHHHHhhEEEECCC
Confidence 3444442 234567889999999999999999999999999999987 4678999999977642 111122222221
Q ss_pred H-------HHHHHH---------HHH------HHHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 156 R-------VENIRR---------IGE------VAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 156 ~-------~~~~~~---------l~~------~a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
. .+++.. +.. ....+... +.. .-....++++++| ..+++++.++++ +++
T Consensus 84 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l--lll 161 (236)
T cd03253 84 TVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI--LLL 161 (236)
T ss_pred ChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 1 011100 000 00011110 111 0123456666666 689999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHhc
Q 024315 207 DVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r~ 227 (269)
|+|+..++....+.+++.+.+
T Consensus 162 DEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 162 DEATSALDTHTEREIQAALRD 182 (236)
T ss_pred eCCcccCCHHHHHHHHHHHHH
Confidence 999999999988887766653
No 264
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=7.1e-13 Score=116.00 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=89.2
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VE 158 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~ 158 (269)
...+..++.+.+|++++|+|+||||||||++.|++.++ +.+|.+.++|.++.. .++..++|.+++. .+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence 46778899999999999999999999999999999884 678999999977532 1111222222210 11
Q ss_pred HHH---------HHHH------HHHHHHhC--Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 159 NIR---------RIGE------VAKLFADA--GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 159 ~~~---------~l~~------~a~~~~~~--g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
++. .+.. ....+... ++.. .+...++++++| ..+++++.++++ +++|+|+..++..
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--llLDEP~~~LD~~ 172 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI--LILDEATSALDTE 172 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCHH
Confidence 110 0000 01111111 1211 123446666666 699999999998 9999999999999
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
....+++.+++
T Consensus 173 ~~~~l~~~l~~ 183 (234)
T cd03251 173 SERLVQAALER 183 (234)
T ss_pred HHHHHHHHHHH
Confidence 88887766653
No 265
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.43 E-value=6.1e-13 Score=128.82 Aligned_cols=143 Identities=17% Similarity=0.247 Sum_probs=97.8
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhh
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~ 155 (269)
++.+.+......+++++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+|+
T Consensus 3 nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 81 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEecc
Confidence 4556665666788999999999999999999999999999999987 4668999999987531 011222222221
Q ss_pred H--------HHHHH---------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 156 R--------VENIR---------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 156 ~--------~~~~~---------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
. .+.+. ........+...++.. .+...++++++| ..+++++.++++ +++|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l--llLD 159 (491)
T PRK10982 82 LNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI--VIMD 159 (491)
T ss_pred cccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE--EEEe
Confidence 1 00000 0011223334444422 234456777777 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
||+..++....+.+++.++
T Consensus 160 EPt~~LD~~~~~~l~~~l~ 178 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIR 178 (491)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999988888765554
No 266
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=7.3e-13 Score=119.63 Aligned_cols=145 Identities=16% Similarity=0.211 Sum_probs=97.0
Q ss_pred cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECCeecCc----ccccCCCC
Q 024315 80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCRH----GLNRDLSF 151 (269)
Q Consensus 80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g~~~~~----~l~~~~g~ 151 (269)
.++.+.+.. ....+.+++++.+|++++|+|+||||||||+++|+|.+.+.. .|.|.++|.++.. .++..++|
T Consensus 9 ~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~ 88 (282)
T PRK13640 9 KHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGI 88 (282)
T ss_pred EEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEE
Confidence 345555532 346788899999999999999999999999999999985432 2899999988742 12223344
Q ss_pred ChhhHH---------HHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 152 KAEDRV---------ENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 152 ~~~~~~---------~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
..++.. +.+.. . ..+...+...++.. .....++++++| ..+++++.++++ ++
T Consensus 89 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~l--ll 166 (282)
T PRK13640 89 VFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI--II 166 (282)
T ss_pred EEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EE
Confidence 333221 11110 0 01122333344422 233456666666 689999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|+|+..++....+.+.+.++
T Consensus 167 lDEPt~gLD~~~~~~l~~~l~ 187 (282)
T PRK13640 167 LDESTSMLDPAGKEQILKLIR 187 (282)
T ss_pred EECCcccCCHHHHHHHHHHHH
Confidence 999999999998887765554
No 267
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.43 E-value=6.4e-13 Score=129.23 Aligned_cols=144 Identities=18% Similarity=0.184 Sum_probs=100.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++++.+......++++|.+.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++... .+..++|..+
T Consensus 9 ~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 87 (510)
T PRK09700 9 AGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGIGIIYQ 87 (510)
T ss_pred eeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCeEEEee
Confidence 466666666667889999999999999999999999999999999884 6689999999876421 1122333222
Q ss_pred hH--------HHHHH------------------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 155 DR--------VENIR------------------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 155 ~~--------~~~~~------------------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+. .+.+. . ...+...+...++.. .+...|+++++| ..+++++.++++
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l- 166 (510)
T PRK09700 88 ELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV- 166 (510)
T ss_pred cccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 11 01100 0 011223344445432 234457777777 689999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHh
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+.+.++
T Consensus 167 -llLDEPt~~LD~~~~~~l~~~l~ 189 (510)
T PRK09700 167 -IIMDEPTSSLTNKEVDYLFLIMN 189 (510)
T ss_pred -EEEeCCCCCCCHHHHHHHHHHHH
Confidence 99999999999998888765544
No 268
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.1e-12 Score=117.18 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=96.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecC--------ccccc
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCR--------HGLNR 147 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~--------~~l~~ 147 (269)
.++.+.+........+++++++|++++|+|+||||||||+++|++.+.+ + .+|.|.++|.++. ..++.
T Consensus 20 ~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~ 99 (265)
T PRK14252 20 NKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRM 99 (265)
T ss_pred EEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhc
Confidence 4555555555677889999999999999999999999999999998753 2 5789999886542 01222
Q ss_pred CCCCChhh-------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCC
Q 024315 148 DLSFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPE 198 (269)
Q Consensus 148 ~~g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~ 198 (269)
.++|.+++ ..+++.. . ......+...++. ......++++++| ..+++++.+
T Consensus 100 ~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 179 (265)
T PRK14252 100 RISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATD 179 (265)
T ss_pred cEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 33333332 1111110 0 1112222223321 1223345666666 689999999
Q ss_pred CCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++ +++|+|+..++....+.+++.+++
T Consensus 180 p~l--lllDEPt~gLD~~~~~~l~~~l~~ 206 (265)
T PRK14252 180 PEI--LLFDEPTSALDPIATASIEELISD 206 (265)
T ss_pred CCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 999 999999999999888877766553
No 269
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.43 E-value=4e-13 Score=117.95 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=90.8
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH-------
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV------- 157 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~------- 157 (269)
....+++++++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. ..+..++|.+++..
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 34678889999999999999999999999999999988 4668999999977531 11122333332210
Q ss_pred HHHH---------HHHHH------HHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 158 ENIR---------RIGEV------AKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 158 ~~~~---------~l~~~------a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
+.+. .+... ...+... +.. ......++++++| ..+++++.++++ +++|+|+..++.
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP~~gLD~ 172 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI--LLLDEATSALDA 172 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCH
Confidence 0000 00000 0000000 111 1123456666666 588999999998 999999999999
Q ss_pred cChhhHHHHHhcC
Q 024315 216 RDPKGLYKLAREG 228 (269)
Q Consensus 216 R~~k~l~~~~r~g 228 (269)
..++.+++.+++-
T Consensus 173 ~~~~~l~~~l~~~ 185 (238)
T cd03249 173 ESEKLVQEALDRA 185 (238)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888777643
No 270
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=2.7e-13 Score=119.40 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=96.5
Q ss_pred cceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCCh
Q 024315 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~ 153 (269)
.++.+.+.+. .+.+.+++.+.+|+.++|+|+||||||||++.|.+++. +.+|.|.++|.++.. .+++..|+..
T Consensus 7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-p~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf 85 (235)
T COG1122 7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQKVGLVF 85 (235)
T ss_pred EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-CCCCEEEECCeeccchhhHHHhhcceEEEE
Confidence 3555555443 66778899999999999999999999999999999985 668999999987541 2333333332
Q ss_pred hhH------------------------HHHHHHHHHHHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 154 EDR------------------------VENIRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 154 ~~~------------------------~~~~~~l~~~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
|.- .+...+ +...+...++. .-...+|+++++| .++..++-+|++ +
T Consensus 86 Qnpd~q~~~~tV~~evafg~~n~g~~~~e~~~r---v~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i--l 160 (235)
T COG1122 86 QNPDDQLFGPTVEDEVAFGLENLGLPREEIEER---VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI--L 160 (235)
T ss_pred ECcccccccCcHHHHHhhchhhcCCCHHHHHHH---HHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE--E
Confidence 211 111222 22233333442 2234457777777 577777778888 9
Q ss_pred EEeCChhHHHhcChhhHHHHHh
Q 024315 205 FMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.+|||+..++.+..+.+.+..+
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHH
Confidence 9999999999988877655544
No 271
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=7.4e-13 Score=119.24 Aligned_cols=144 Identities=15% Similarity=0.228 Sum_probs=98.0
Q ss_pred cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315 80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~ 152 (269)
.++.+.+.. +...+.+++.+.+|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++.. .++..++|.
T Consensus 8 ~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (277)
T PRK13642 8 ENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKVKIDGELLTAENVWNLRRKIGMV 86 (277)
T ss_pred EEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEECCcCCHHHHhcceEEE
Confidence 455555532 33678889999999999999999999999999999988 4678999999987642 122334444
Q ss_pred hhhH---------HHHHHH-----------H-HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 153 AEDR---------VENIRR-----------I-GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 153 ~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.++. .+++.. . ..+...+...++... +...++++++| ..+++++.++++ +++
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l--lll 164 (277)
T PRK13642 87 FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI--IIL 164 (277)
T ss_pred EECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 4332 111110 0 011122333333221 23356666666 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|+..++....+.+++.++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~ 184 (277)
T PRK13642 165 DESTSMLDPTGRQEIMRVIH 184 (277)
T ss_pred eCCcccCCHHHHHHHHHHHH
Confidence 99999999999888776654
No 272
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=8.8e-13 Score=116.98 Aligned_cols=146 Identities=19% Similarity=0.195 Sum_probs=96.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++++.+|++++|+|+||||||||+++|++.+.. + ..|.+.++|.++.. ..+..+
T Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 89 (253)
T PRK14261 10 KNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKI 89 (253)
T ss_pred eeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceE
Confidence 4566666555677889999999999999999999999999999997642 2 37999999987642 112223
Q ss_pred CCChhhH-------HHHHH------------HH-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIR------------RI-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~------------~l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|..++. .+++. .. ..+...+...++ ...+...++++++| ..+++++.+++
T Consensus 90 ~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 169 (253)
T PRK14261 90 GMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE 169 (253)
T ss_pred EEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3322221 01110 00 011112222222 11233456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+.+.++.
T Consensus 170 l--llLDEP~~gLD~~~~~~l~~~l~~ 194 (253)
T PRK14261 170 V--ILMDEPCSALDPIATAKIEDLIED 194 (253)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 9 999999999999988887766553
No 273
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=9.8e-13 Score=117.37 Aligned_cols=146 Identities=18% Similarity=0.128 Sum_probs=96.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC----CccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~----~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+++++++++|++++|+|+||||||||+++|++.+++. ..|.+.++|.++.. .++..+
T Consensus 11 ~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i 90 (261)
T PRK14258 11 NNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQV 90 (261)
T ss_pred eeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccE
Confidence 45666555545678899999999999999999999999999999998642 26899999877521 112222
Q ss_pred CCChhh-------HHHHHHH-------------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAED-------RVENIRR-------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~-------~~~~~~~-------------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++ ..+++.. ...+...+...++. ..+...++++++| ..+++++.+++
T Consensus 91 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ 170 (261)
T PRK14258 91 SMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPK 170 (261)
T ss_pred EEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 222221 1111110 00111222233321 1223456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 171 v--llLDEP~~~LD~~~~~~l~~~l~~ 195 (261)
T PRK14258 171 V--LLMDEPCFGLDPIASMKVESLIQS 195 (261)
T ss_pred E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999988887766553
No 274
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1e-12 Score=121.36 Aligned_cols=135 Identities=20% Similarity=0.182 Sum_probs=93.2
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCCCCChhhH---
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDLSFKAEDR--- 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~g~~~~~~--- 156 (269)
....++++++++|++++|+|+||||||||+++|.+.+.. +.+|.|.++|.++.. .++..++|.+++.
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 456788999999999999999999999999999998742 357999999998752 2333444443321
Q ss_pred ----HHHHHH---H-----HH-----HHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 157 ----VENIRR---I-----GE-----VAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 157 ----~~~~~~---l-----~~-----~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
.+++.. . .+ ....+...++ ......+++++++| ..+|+++.++++ +++|+|+
T Consensus 176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~I--lLLDEPt 253 (329)
T PRK14257 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEV--LLMDEPT 253 (329)
T ss_pred CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCE--EEEeCCc
Confidence 122210 0 00 1112222222 12233456777777 699999999999 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..++....+.+.+.++
T Consensus 254 s~LD~~~~~~i~~~i~ 269 (329)
T PRK14257 254 SALDPIATAKIEELIL 269 (329)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999988877766655
No 275
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.42 E-value=1e-12 Score=114.60 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=95.6
Q ss_pred cceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecCc-ccccCCCCC
Q 024315 80 TNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRH-GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~~-~l~~~~g~~ 152 (269)
.++.+.+.. ....+.+++++++|++++|+|+||||||||++.|++.++. +.+|.+.++|.++.. ..+..+++.
T Consensus 7 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~ 86 (226)
T cd03234 7 WDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYV 86 (226)
T ss_pred ecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEe
Confidence 345555532 4567888999999999999999999999999999998852 568999999987532 112222222
Q ss_pred hhh--------HHHHHHH---H------------HHHHH-HHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 153 AED--------RVENIRR---I------------GEVAK-LFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 153 ~~~--------~~~~~~~---l------------~~~a~-~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
+++ ..+++.. . ..... .+...++.. .+...++++++| ..+++++.++++
T Consensus 87 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~i-- 164 (226)
T cd03234 87 RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-- 164 (226)
T ss_pred CCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCE--
Confidence 221 1111110 0 00011 222223221 123446666666 689999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|+|+..++....+.+.+.+++
T Consensus 165 lllDEP~~gLD~~~~~~~~~~l~~ 188 (226)
T cd03234 165 LILDEPTSGLDSFTALNLVSTLSQ 188 (226)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999888887766553
No 276
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.42 E-value=2.8e-13 Score=112.71 Aligned_cols=131 Identities=22% Similarity=0.239 Sum_probs=91.2
Q ss_pred CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccc-cCCCCChhhHH-
Q 024315 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLN-RDLSFKAEDRV- 157 (269)
Q Consensus 87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~-~~~g~~~~~~~- 157 (269)
..++....+++.+++|+.++|+||||||||||+..|+++ ..+.+|.|++.|.++.. .++ ++.||..|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L 99 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence 367778889999999999999999999999999999995 46789999999988752 111 22343333210
Q ss_pred -------HHH-----------HHHH-HHHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 158 -------ENI-----------RRIG-EVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 158 -------~~~-----------~~l~-~~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
++. +... ....++...|+. -+....+++++|| .++|+++..|++ +|-|+|+-.+
T Consensus 100 ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~v--LfADEPTGNL 177 (228)
T COG4181 100 IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDV--LFADEPTGNL 177 (228)
T ss_pred cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCE--EeccCCCCCc
Confidence 000 0000 111233333432 2445567788888 699999999998 8999999999
Q ss_pred HhcChhh
Q 024315 214 EARDPKG 220 (269)
Q Consensus 214 ~~R~~k~ 220 (269)
+...-+.
T Consensus 178 D~~Tg~~ 184 (228)
T COG4181 178 DRATGDK 184 (228)
T ss_pred chhHHHH
Confidence 8776555
No 277
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=116.03 Aligned_cols=146 Identities=20% Similarity=0.194 Sum_probs=97.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~ 149 (269)
.++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+. + +.+|.|.++|.++.. .++..+
T Consensus 7 ~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i 86 (250)
T PRK14266 7 ENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKV 86 (250)
T ss_pred EeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhhe
Confidence 455555555567788999999999999999999999999999999764 2 257999999987642 122233
Q ss_pred CCChhhH-------HHHHHH------------HH-HHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315 150 SFKAEDR-------VENIRR------------IG-EVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~------------l~-~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+|.+++. .+++.. .. .....+...++. ......++++++| ..+++++.+++
T Consensus 87 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 166 (250)
T PRK14266 87 GMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPE 166 (250)
T ss_pred EEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3333221 111110 00 011122222321 1133456666666 68999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +++|+|+..++....+.+++.+++
T Consensus 167 l--lllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 167 V--ILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 9 999999999999888887766654
No 278
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.41 E-value=8.3e-13 Score=129.99 Aligned_cols=134 Identities=22% Similarity=0.273 Sum_probs=91.6
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|+|.+ ++.+|.+.++|.++.. .+++.++|.+|+. +++
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence 346678999999999999999999999999999988 5678999999987642 2223333333321 111
Q ss_pred HH-------------HHHH--HHHHHHh--CCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 IR-------------RIGE--VAKLFAD--AGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~~-------------~l~~--~a~~~~~--~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+. .+.. ....+.. .|... -....++++++| ..+|+++.++++ +.+|||++.++...
T Consensus 434 i~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~i--lilDEpts~lD~~~ 511 (576)
T TIGR02204 434 IRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI--LLLDEATSALDAES 511 (576)
T ss_pred HhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCe--EEEeCcccccCHHH
Confidence 11 1100 1111111 13221 123457777777 799999999999 99999999999998
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+++.+++
T Consensus 512 ~~~i~~~l~~ 521 (576)
T TIGR02204 512 EQLVQQALET 521 (576)
T ss_pred HHHHHHHHHH
Confidence 8877666554
No 279
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.1e-13 Score=130.03 Aligned_cols=130 Identities=20% Similarity=0.245 Sum_probs=88.8
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVE 158 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~ 158 (269)
....+.++++++|+.++|+|+||||||||++.|+|++ ++..|.|.++|.+++. .+++++.+.+|. .++
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTire 413 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRE 413 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHH
Confidence 3445679999999999999999999999999999988 4679999999987763 233333333221 111
Q ss_pred HH------------HHHHHH---HHHHHh-CCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 159 NI------------RRIGEV---AKLFAD-AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 159 ~~------------~~l~~~---a~~~~~-~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
++ ....+. ...... .|+... ....|+++.+| ..+|+++.++++ +++|||+..+|.+.
T Consensus 414 Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l--~llDEpTA~LD~et 491 (559)
T COG4988 414 NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL--LLLDEPTAHLDAET 491 (559)
T ss_pred HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE--EEecCCccCCCHhH
Confidence 11 111111 111111 233322 23357888888 699999999888 89999999999888
Q ss_pred hhhHH
Q 024315 218 PKGLY 222 (269)
Q Consensus 218 ~k~l~ 222 (269)
.+-+.
T Consensus 492 E~~i~ 496 (559)
T COG4988 492 EQIIL 496 (559)
T ss_pred HHHHH
Confidence 76543
No 280
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.41 E-value=6.7e-13 Score=125.34 Aligned_cols=139 Identities=19% Similarity=0.262 Sum_probs=96.9
Q ss_pred ceEEeeCceee------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCC
Q 024315 81 NILWHKNSVDK------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLS 150 (269)
Q Consensus 81 ~~~~~~~~v~~------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g 150 (269)
.++|.++.+.+ ..++||++++|++++|+||||+||||+.+.|.+.+ +-.+|.|.+||.+++. .+++.+|
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCceEEEcCchHHHHHHHHHHHhcC
Confidence 44555444443 46679999999999999999999999999999977 6679999999999973 6777788
Q ss_pred CChhhHH-------------------HHHHHHHHHHH----HHH-hCCcc----eeeccCChHHHHH-HHHHHhCCCCCc
Q 024315 151 FKAEDRV-------------------ENIRRIGEVAK----LFA-DAGVI----CIACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 151 ~~~~~~~-------------------~~~~~l~~~a~----~~~-~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
..+|+-. +.+...++.+. +++ ..|.. +-..-.+++++|| +++|.+++.|.+
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 7777531 11111111111 111 01111 1122346677777 799999999988
Q ss_pred cEEEEeCChhHHHhcChhhHH
Q 024315 202 IEVFMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~ 222 (269)
|++|+.++.++....+.+.
T Consensus 696 --IlLDEATSALDT~tER~IQ 714 (790)
T KOG0056|consen 696 --ILLDEATSALDTNTERAIQ 714 (790)
T ss_pred --EEEcchhhhcCCccHHHHH
Confidence 9999999999877665554
No 281
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.41 E-value=8.2e-13 Score=129.43 Aligned_cols=135 Identities=22% Similarity=0.253 Sum_probs=91.9
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VE 158 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~ 158 (269)
...++.++++++|+.++|+|+||||||||++.|+|.+ ++.+|.+.++|.++.. .+++.+++.+|+. ++
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 410 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE 410 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHH
Confidence 3456779999999999999999999999999999988 5778999999987653 1222223322211 11
Q ss_pred HHH-------------HHH--HHHHHHHhC--Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 159 NIR-------------RIG--EVAKLFADA--GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 159 ~~~-------------~l~--~~a~~~~~~--g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
++. .+. .....+... |... -....++++++| ..+|+++.++++ +.+|||++.+|..
T Consensus 411 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i--lilDEpts~LD~~ 488 (544)
T TIGR01842 411 NIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL--VVLDEPNSNLDEE 488 (544)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCccccCHH
Confidence 111 000 001111111 2222 133457777777 699999999999 9999999999999
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
..+.+.+.+++
T Consensus 489 ~~~~i~~~l~~ 499 (544)
T TIGR01842 489 GEQALANAIKA 499 (544)
T ss_pred HHHHHHHHHHH
Confidence 88887766554
No 282
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.41 E-value=1.6e-12 Score=120.39 Aligned_cols=139 Identities=21% Similarity=0.280 Sum_probs=95.2
Q ss_pred EeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCC-------
Q 024315 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDL------- 149 (269)
Q Consensus 84 ~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~------- 149 (269)
+....+.+.+.+++++++|++++|+|.||||||||..+|.+++.. .|.|+|+|.++.. .+++++
T Consensus 295 r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s--~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDP 372 (534)
T COG4172 295 RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372 (534)
T ss_pred ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--CceEEECCccccccChhhhhhhhhhceEEEeCC
Confidence 334468889999999999999999999999999999999998853 5899999998752 111111
Q ss_pred --CCChh----hH-----------HHHHHHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 150 --SFKAE----DR-----------VENIRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 150 --g~~~~----~~-----------~~~~~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
++++. +. ...-.+...+...+...|+-. +....++++++| .++|+++-+|+| |.+
T Consensus 373 ygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~--i~L 450 (534)
T COG4172 373 YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL--ILL 450 (534)
T ss_pred CCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE--EEe
Confidence 11111 00 000112223444555555532 333445666666 799999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|+|++.++.-.+....+.+|
T Consensus 451 DEPTSALD~SVQaQvv~LLr 470 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLR 470 (534)
T ss_pred cCCchHhhHHHHHHHHHHHH
Confidence 99999999777666444433
No 283
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.41 E-value=5.6e-13 Score=125.19 Aligned_cols=143 Identities=20% Similarity=0.180 Sum_probs=98.8
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe----ecCc----c---cc-cC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRH----G---LN-RD 148 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~----~~~~----~---l~-~~ 148 (269)
++...++.+...+.++|.+++|++++|+|+||||||||+++|++.+ .+.+|.|+++|. ++.. . ++ ..
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 4445566778889999999999999999999999999999999988 467899999985 2221 0 11 22
Q ss_pred CCCChhh--------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 149 LSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 149 ~g~~~~~--------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
++|..|+ ..+++.. .......+...++.. ....+++++++| ..+++++.++++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I-- 185 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI-- 185 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence 3332221 1122111 011223344445432 233456777777 699999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|+|+..++...++.+++.++
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~ 208 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELL 208 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHH
Confidence 99999999999999888776654
No 284
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.40 E-value=1.4e-12 Score=117.37 Aligned_cols=146 Identities=20% Similarity=0.158 Sum_probs=95.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC-------ccEEEECCeecCc----ccccC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-------KLTYILDGDNCRH----GLNRD 148 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~-------~g~i~l~g~~~~~----~l~~~ 148 (269)
.++++.+......+++++.+++|++++|+|+||||||||+++|+|.+++.. +|.+.++|.++.. .++..
T Consensus 5 ~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (272)
T PRK13547 5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARL 84 (272)
T ss_pred EEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhh
Confidence 355666655667788999999999999999999999999999999885321 7999999987632 11111
Q ss_pred CCCChhh--------HHHHHHH---------------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC---
Q 024315 149 LSFKAED--------RVENIRR---------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSML--- 196 (269)
Q Consensus 149 ~g~~~~~--------~~~~~~~---------------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll--- 196 (269)
.+|.+++ ..+++.. . ......+...++.. .+...++++++| ..+++++
T Consensus 85 ~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~ 164 (272)
T PRK13547 85 RAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLW 164 (272)
T ss_pred cEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 1111111 1111100 0 01112233334322 233456666666 6888888
Q ss_pred ------CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 197 ------PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 197 ------~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.++++ +++|||+..++....+.+.+.+++
T Consensus 165 ~~~~~~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 165 PPHDAAQPPRY--LLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred cccccCCCCCE--EEEcCccccCCHHHHHHHHHHHHH
Confidence 37788 999999999999998887766553
No 285
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.40 E-value=5.3e-13 Score=126.45 Aligned_cols=134 Identities=29% Similarity=0.301 Sum_probs=100.0
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
...+++|.+++|+.++|+||||||||||+|.|.+.. .+.+|.|++||-+++. .+-+++||-+|+- .++
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeN 429 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAEN 429 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHH
Confidence 446779999999999999999999999999999988 5779999999988763 4566778888754 356
Q ss_pred HHHHHH------HHHHHHhCCcce------------e---eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 IRRIGE------VAKLFADAGVIC------------I---ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~~~l~~------~a~~~~~~g~~~------------i---v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+.|+.+ +...-.-+++.+ + ...++++++|| ..+|++..+|.+ |.+|||-..+|..-
T Consensus 430 IaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l--vVLDEPNsNLD~~G 507 (580)
T COG4618 430 IARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL--VVLDEPNSNLDSEG 507 (580)
T ss_pred HHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE--EEecCCCCCcchhH
Confidence 655531 111122223322 1 22346777777 699999999988 99999999999887
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+.+.+..
T Consensus 508 E~AL~~Ai~~ 517 (580)
T COG4618 508 EAALAAAILA 517 (580)
T ss_pred HHHHHHHHHH
Confidence 7777655443
No 286
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.40 E-value=1.1e-12 Score=115.42 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=92.8
Q ss_pred CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCC-----------
Q 024315 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFK----------- 152 (269)
Q Consensus 87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~----------- 152 (269)
+.....+++++.+++|++++|+|+||||||||+++|++.++ +.+|.|.++|.+... ..+..++|.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 34567788999999999999999999999999999999884 668999999876421 111122221
Q ss_pred -hhhHHHHHHHH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 153 -AEDRVENIRRI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 153 -~~~~~~~~~~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
..+.......+ ......+...++.. .+...++++++| ..+++++.++++ +++|||+..++...
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD~~~ 188 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI--LFLDEPTIGLDVVA 188 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHH
Confidence 11111100000 01122333334322 233456666666 688999999998 99999999999999
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+++.+++
T Consensus 189 ~~~l~~~l~~ 198 (236)
T cd03267 189 QENIRNFLKE 198 (236)
T ss_pred HHHHHHHHHH
Confidence 8888776553
No 287
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.3e-12 Score=126.90 Aligned_cols=144 Identities=21% Similarity=0.221 Sum_probs=99.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
.++.+.+......+++++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+|
T Consensus 8 ~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q 86 (501)
T PRK11288 8 DGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSILIDGQEMRFASTTAALAAGVAIIYQ 86 (501)
T ss_pred eeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHhCCEEEEEe
Confidence 45666665556778999999999999999999999999999999987 4668999999977631 11222333222
Q ss_pred hH--------HHHHH--------------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 155 DR--------VENIR--------------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 155 ~~--------~~~~~--------------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+. .+++. . ..++...+...++.. .+...++++++| ..+++++.++++ +++
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llL 164 (501)
T PRK11288 87 ELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV--IAF 164 (501)
T ss_pred chhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE--EEE
Confidence 11 01100 0 011223344444422 234456777777 689999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++....+.+.+.++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~ 184 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIR 184 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 99999999998888776554
No 288
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.40 E-value=1.2e-12 Score=127.10 Aligned_cols=145 Identities=16% Similarity=0.152 Sum_probs=99.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCcc-----cccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~~-----l~~~~g~~~ 153 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||+++|++.+++ +.+|.|.++|.++... .+..++|.+
T Consensus 5 ~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 84 (500)
T TIGR02633 5 KGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIH 84 (500)
T ss_pred EeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 3555555556678899999999999999999999999999999998853 3589999999776420 112233332
Q ss_pred hhH--------HHHHH---------------H-HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 154 EDR--------VENIR---------------R-IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 154 ~~~--------~~~~~---------------~-l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
|+. .+.+. . .......+...++.. .+...|+++++| ..+++++.++++
T Consensus 85 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~l-- 162 (500)
T TIGR02633 85 QELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARL-- 162 (500)
T ss_pred eccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCE--
Confidence 221 00000 0 011223344444422 134457777777 688999999998
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+++.++
T Consensus 163 llLDEPt~~LD~~~~~~l~~~l~ 185 (500)
T TIGR02633 163 LILDEPSSSLTEKETEILLDIIR 185 (500)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Confidence 99999999999998888776544
No 289
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.40 E-value=2.5e-12 Score=113.87 Aligned_cols=146 Identities=16% Similarity=0.071 Sum_probs=96.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECCeecCcc---ccc--CCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG---LNR--DLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g~~~~~~---l~~--~~g~~~ 153 (269)
.++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+ ..+.+|.+.++|.++... .+. .+++..
T Consensus 11 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 90 (252)
T CHL00131 11 KNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAF 90 (252)
T ss_pred EeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEe
Confidence 45555555556788899999999999999999999999999999973 246689999999876421 011 111211
Q ss_pred hh--------HHHHHH-------------------HHHHHHHHHHhCCcc-----eeec-cCChHHHHH-HHHHHhCCCC
Q 024315 154 ED--------RVENIR-------------------RIGEVAKLFADAGVI-----CIAC-LISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 154 ~~--------~~~~~~-------------------~l~~~a~~~~~~g~~-----~iv~-~~~~~~~~r-~~ar~ll~~~ 199 (269)
++ ..+.+. ....+...+...++. .... ..++++++| ..+++++.++
T Consensus 91 q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 170 (252)
T CHL00131 91 QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDS 170 (252)
T ss_pred ccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCC
Confidence 11 011100 001122233333332 1122 256666666 6899999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|+|+..++....+.+.+.+++
T Consensus 171 ~l--lllDEPt~~LD~~~~~~l~~~l~~ 196 (252)
T CHL00131 171 EL--AILDETDSGLDIDALKIIAEGINK 196 (252)
T ss_pred CE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 99 999999999999998887766553
No 290
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.40 E-value=1.4e-12 Score=116.08 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=92.8
Q ss_pred cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315 80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~ 153 (269)
.++.+.+.. ....+++++.+++|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++.. .++..++|..
T Consensus 23 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~ 101 (257)
T cd03288 23 HDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGKIVIDGIDISKLPLHTLRSRLSIIL 101 (257)
T ss_pred EEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCeEEECCEEhhhCCHHHHhhhEEEEC
Confidence 344444432 34567789999999999999999999999999999987 4678999999987642 1112222222
Q ss_pred hhH-------HHHH--------HHHHH------HHHHHHhC--Cccee----eccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 154 EDR-------VENI--------RRIGE------VAKLFADA--GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 154 ~~~-------~~~~--------~~l~~------~a~~~~~~--g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
++. .+.+ ..+.. +...+... ++... ....++++++| ..+++++.++++ ++
T Consensus 102 q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--ll 179 (257)
T cd03288 102 QDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI--LI 179 (257)
T ss_pred CCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 211 0000 00000 11111111 11111 12345666666 689999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHhc
Q 024315 206 MDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+|+|+..++....+.+++.++.
T Consensus 180 lDEPt~gLD~~~~~~l~~~l~~ 201 (257)
T cd03288 180 MDEATASIDMATENILQKVVMT 201 (257)
T ss_pred EeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999888777766654
No 291
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.40 E-value=1.5e-12 Score=113.24 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=90.0
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe----ecCc-------cc-ccCCCCChhhH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRH-------GL-NRDLSFKAEDR 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~----~~~~-------~l-~~~~g~~~~~~ 156 (269)
....+.+++.+.+|++++|+|+||||||||+++|++.++ +.+|.|.+++. ++.. .+ +..++|.+++.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 456788999999999999999999999999999999884 56899999742 3210 00 11223322221
Q ss_pred H--------HHHH-----------HH-HHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 157 V--------ENIR-----------RI-GEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 157 ~--------~~~~-----------~l-~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
. +.+. .. ......+...++.. .+...++++++| ..+++++.++++ +++|+|+
T Consensus 100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt 177 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPI--LLLDEPT 177 (224)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence 0 0100 00 11122333344321 233456666666 689999999998 9999999
Q ss_pred hHHHhcChhhHHHHHhc
Q 024315 211 QVCEARDPKGLYKLARE 227 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r~ 227 (269)
..++....+.+.+.+++
T Consensus 178 ~~LD~~~~~~l~~~l~~ 194 (224)
T TIGR02324 178 ASLDAANRQVVVELIAE 194 (224)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999888887766553
No 292
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=1.2e-12 Score=115.11 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=95.4
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh---
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED--- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~--- 155 (269)
++.+.+... ..+.+++++.+|++++|+|+||||||||+++|++.+ .+.+|.++++|.++.. ..+..+++.+++
T Consensus 5 ~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~ 82 (235)
T cd03299 5 NLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNLPPEKRDISYVPQNYAL 82 (235)
T ss_pred eEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcCcCChhHcCEEEEeecCcc
Confidence 455555432 577889999999999999999999999999999987 4668999999977642 011122222111
Q ss_pred -----HHHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315 156 -----RVENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 156 -----~~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
..+.+.. . .+....+...++.. .+...++++++| ..+++++.++++ +++|+|+..+
T Consensus 83 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~gL 160 (235)
T cd03299 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI--LLLDEPFSAL 160 (235)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE--EEECCCcccC
Confidence 0111110 0 11222333344422 223456666666 689999999999 9999999999
Q ss_pred HhcChhhHHHHHhc
Q 024315 214 EARDPKGLYKLARE 227 (269)
Q Consensus 214 ~~R~~k~l~~~~r~ 227 (269)
+....+.+.+.+++
T Consensus 161 D~~~~~~l~~~l~~ 174 (235)
T cd03299 161 DVRTKEKLREELKK 174 (235)
T ss_pred CHHHHHHHHHHHHH
Confidence 99988887766554
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.40 E-value=1.4e-12 Score=127.39 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=99.9
Q ss_pred cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCcc-------
Q 024315 80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------- 144 (269)
Q Consensus 80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~~------- 144 (269)
.++.+.+. .....++++|.+.+|++++|+|+||||||||++.|++.+++ +.+|.|.++|.++...
T Consensus 9 ~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 88 (529)
T PRK15134 9 ENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRG 88 (529)
T ss_pred eceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHH
Confidence 45555553 24577889999999999999999999999999999999864 2589999999876421
Q ss_pred cc-cCCCCChhhHH----------HHHH-------------HHHHHHHHHHhCCcce-------eeccCChHHHHH-HHH
Q 024315 145 LN-RDLSFKAEDRV----------ENIR-------------RIGEVAKLFADAGVIC-------IACLISPYRKDR-DAC 192 (269)
Q Consensus 145 l~-~~~g~~~~~~~----------~~~~-------------~l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~a 192 (269)
.+ ..++|.+|+.. +.+. ...++...+...++.. .+..+++++++| ..+
T Consensus 89 ~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iA 168 (529)
T PRK15134 89 VRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIA 168 (529)
T ss_pred HhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHH
Confidence 11 23444333210 0000 0011223344444421 234567777777 699
Q ss_pred HHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 193 r~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++++.++++ +++|||+..++....+.+.+.+++
T Consensus 169 raL~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 169 MALLTRPEL--LIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHH
Confidence 999999999 999999999999988887655543
No 294
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.40 E-value=1.1e-12 Score=132.13 Aligned_cols=134 Identities=20% Similarity=0.224 Sum_probs=93.9
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++.+++|+.++|+|+||||||||++.|+|.+ .+.+|.|.+||.++.. .++..+++.+|+. +++
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eN 550 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN 550 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHH
Confidence 456779999999999999999999999999999988 5678999999998763 3334444443321 111
Q ss_pred HH------------HHHHH---HHHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 IR------------RIGEV---AKLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~~------------~l~~~---a~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+. ...+. ..... ..|+... ....++++++| ..+|+++.++++ +++|||++.++...
T Consensus 551 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i--lilDEpts~LD~~~ 628 (694)
T TIGR01846 551 IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI--LIFDEATSALDYES 628 (694)
T ss_pred HhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE--EEEECCCcCCCHHH
Confidence 11 00000 01111 1123222 23457777777 699999999999 99999999999999
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+++.+++
T Consensus 629 ~~~i~~~l~~ 638 (694)
T TIGR01846 629 EALIMRNMRE 638 (694)
T ss_pred HHHHHHHHHH
Confidence 8887766654
No 295
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.40 E-value=8.4e-13 Score=111.00 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=90.4
Q ss_pred eCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----------cc--cCCCC-
Q 024315 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----------LN--RDLSF- 151 (269)
Q Consensus 86 ~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----------l~--~~~g~- 151 (269)
...+.+.+++||++.+|++++++|.||||||||++.|+|.+ +|.+|.+++++..+..+ +. ++..+
T Consensus 23 r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 23 RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred hhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCccccccchHhhhhheeeeecCCccccC
Confidence 34677889999999999999999999999999999999988 57799999999876531 00 11112
Q ss_pred -------------------ChhhHHHHHHHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 152 -------------------KAEDRVENIRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 152 -------------------~~~~~~~~~~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.++.|.+ ++..-+...|+.. ...+.+..+++| ..+|+++-+|++ |..
T Consensus 102 PRl~iGqiLd~PL~l~T~~~~~~R~~------~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~i--IIa 173 (267)
T COG4167 102 PRLRIGQILDFPLRLNTDLEPEQRRK------QIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKI--IIA 173 (267)
T ss_pred hhhhhhhHhcchhhhcccCChHHHHH------HHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcE--EEe
Confidence 2222222 2222233334322 233445566777 689999999998 899
Q ss_pred eCChhHHHhcChhhHH
Q 024315 207 DVPLQVCEARDPKGLY 222 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~ 222 (269)
|+.+..++.-.+-.+.
T Consensus 174 DeAl~~LD~smrsQl~ 189 (267)
T COG4167 174 DEALASLDMSMRSQLI 189 (267)
T ss_pred hhhhhhccHHHHHHHH
Confidence 9999999887766543
No 296
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.40 E-value=3.1e-12 Score=112.05 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=87.9
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc------cccCCC----CChhhHHHH-HH
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLS----FKAEDRVEN-IR 161 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~------l~~~~g----~~~~~~~~~-~~ 161 (269)
+.+++++.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++... +..+.. .+..+.... ..
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 4568899999999999999999999999999988 46689999999876421 000100 111111110 00
Q ss_pred ---------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 162 ---------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 162 ---------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
. .......+...++.. .+...++++++| ..+++++.++++ +++|||+..++....+.+.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~~l~~~l~ 158 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV--LLLDEPFGALDALTRGNLQEELM 158 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCCcCCCHHHHHHHHHHHH
Confidence 0 001222333444422 233456677776 689999999999 99999999999998888766554
No 297
>PRK06762 hypothetical protein; Provisional
Probab=99.39 E-value=2.2e-12 Score=107.05 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeecc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL 181 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~ 181 (269)
+.+++|+|++||||||+++.|+..+. .+.++++.|.+++.+........... ...+.+........|..++++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~~~~~~~~---~~~~~~~~~~~~~~g~~vild~ 75 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVKDGPGNLS---IDLIEQLVRYGLGHCEFVILEG 75 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhccccCCCCCcC---HHHHHHHHHHHHhCCCEEEEch
Confidence 46899999999999999999999873 35778898888764432211111011 1112222222334566666655
Q ss_pred CChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHH
Q 024315 182 ISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELA 259 (269)
Q Consensus 182 ~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~ 259 (269)
.......+..++.+... .++..++++.|.+.|.+|..++-. ...-..+.+....+.++++..++.+|+|+ ..+++
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 152 (166)
T PRK06762 76 ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNPHDTLGVIGETIFTD-NLSLK 152 (166)
T ss_pred hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhhcCCcCCCCeEEecC-CCCHH
Confidence 43333344444544432 256679999999999999855531 00000111222223335555567788885 68899
Q ss_pred HHHH-HHhhc
Q 024315 260 ETWR-ITKWL 268 (269)
Q Consensus 260 ~~~~-i~~~~ 268 (269)
++.. |.+++
T Consensus 153 ~v~~~i~~~~ 162 (166)
T PRK06762 153 DIFDAILTDI 162 (166)
T ss_pred HHHHHHHHHh
Confidence 9988 87765
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.39 E-value=1.3e-12 Score=113.24 Aligned_cols=139 Identities=16% Similarity=0.158 Sum_probs=89.5
Q ss_pred eEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315 82 ILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK 152 (269)
Q Consensus 82 ~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~ 152 (269)
+.+.+. .....+.+++++++|++++|+|+||||||||+++|++.+. +.+|.|.++|.++.. ..+..++|.
T Consensus 6 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 84 (218)
T cd03290 6 GYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYA 84 (218)
T ss_pred eEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEE
Confidence 444443 3446788899999999999999999999999999999884 668999999875421 111222322
Q ss_pred hhhH-------HHHHHH-----HHHHHHHHHhCCc---------------ceeeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 153 AEDR-------VENIRR-----IGEVAKLFADAGV---------------ICIACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 153 ~~~~-------~~~~~~-----l~~~a~~~~~~g~---------------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
.++. .+++.. ...........++ ...+...++++++| ..+++++.++++ +
T Consensus 85 ~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i--l 162 (218)
T cd03290 85 AQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI--V 162 (218)
T ss_pred cCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE--E
Confidence 2211 111110 0000111111111 01233456666666 699999999999 9
Q ss_pred EEeCChhHHHhcChhhHHH
Q 024315 205 FMDVPLQVCEARDPKGLYK 223 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~~ 223 (269)
++|+|+..++....+.+.+
T Consensus 163 llDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 163 FLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred EEeCCccccCHHHHHHHHH
Confidence 9999999999887776654
No 299
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.39 E-value=9e-13 Score=129.90 Aligned_cols=134 Identities=18% Similarity=0.245 Sum_probs=91.1
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++++++|+.++|+|+||||||||++.|.|.+ +|.+|.|.++|.++.. .++..+++.+|+. +++
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 408 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence 456678999999999999999999999999999988 5678999999987642 1222223222211 111
Q ss_pred H------------HHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 I------------RRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~------------~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+ ....+.+ .... ..|+... ....++++++| ..+|+++.++++ +++|||+..++...
T Consensus 409 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i--lllDEpts~LD~~~ 486 (569)
T PRK10789 409 IALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI--LILDDALSAVDGRT 486 (569)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECccccCCHHH
Confidence 1 1101110 0011 1122221 23457777777 699999999999 99999999999999
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+.+.+++
T Consensus 487 ~~~i~~~l~~ 496 (569)
T PRK10789 487 EHQILHNLRQ 496 (569)
T ss_pred HHHHHHHHHH
Confidence 8887766654
No 300
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.39 E-value=1e-12 Score=130.01 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=91.0
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..++.++.+++|+.++|+|+||||||||++.|+|.+ ++.+|.|.++|.++.. .++..+++.+|+. .++
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 428 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIREN 428 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHH
Confidence 356678999999999999999999999999999988 5678999999987642 1222233322221 111
Q ss_pred H-------------HHHHH--HHHHHHh--CCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 I-------------RRIGE--VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~-------------~~l~~--~a~~~~~--~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+ ..... ....... .|.. .-....++++++| ..+|+++.++++ +.+|||++.+|...
T Consensus 429 i~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i--lilDEpts~LD~~~ 506 (585)
T TIGR01192 429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI--LVLDEATSALDVET 506 (585)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHH
Confidence 1 11000 0011111 1221 1233457777777 799999999999 99999999999999
Q ss_pred hhhHHHHHhc
Q 024315 218 PKGLYKLARE 227 (269)
Q Consensus 218 ~k~l~~~~r~ 227 (269)
.+.+++.+++
T Consensus 507 ~~~i~~~l~~ 516 (585)
T TIGR01192 507 EARVKNAIDA 516 (585)
T ss_pred HHHHHHHHHH
Confidence 8887766553
No 301
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.38 E-value=4.9e-13 Score=107.16 Aligned_cols=116 Identities=28% Similarity=0.355 Sum_probs=76.5
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH--------HHH-
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR--------VEN- 159 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~--------~~~- 159 (269)
+++++.+.+|++++|+|+||||||||+++|.+.+. +.+|.+.+++.++.. ..+..+++.+++. .+.
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeeccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 35688999999999999999999999999999885 568999999998864 1222233322221 111
Q ss_pred -HHHHHHHHHHHHhCCc-ceee----ccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 160 -IRRIGEVAKLFADAGV-ICIA----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 160 -~~~l~~~a~~~~~~g~-~~iv----~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
-.+..++...+..... ...+ ...++++++| ..+++++.++++ +++|+|++
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l--lllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL--LLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE--EEEESTTT
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE--EEEeCCCC
Confidence 1111222222221111 1122 4556666666 699999999999 99999974
No 302
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.38 E-value=1.3e-12 Score=126.68 Aligned_cols=135 Identities=17% Similarity=0.256 Sum_probs=92.1
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHH-------
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRV------- 157 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~------- 157 (269)
...+++++.+.+|++++|+|+||||||||++.|++.++++.+|.|.++|.++.. .++..++|.+|+..
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 353 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence 456788999999999999999999999999999998854468999999976531 11222333333210
Q ss_pred ----HH--------H--------H-HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 158 ----EN--------I--------R-RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 158 ----~~--------~--------~-~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
+. . . .-..+...+...++.. .+...|+++++| ..+++++.++++ +++|||+
T Consensus 354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~l--llLDEPt 431 (500)
T TIGR02633 354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRV--LILDEPT 431 (500)
T ss_pred CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCE--EEEcCCC
Confidence 00 0 0 0011223344444421 234557777777 688999999998 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..++......+++.++
T Consensus 432 ~~LD~~~~~~l~~~l~ 447 (500)
T TIGR02633 432 RGVDVGAKYEIYKLIN 447 (500)
T ss_pred CCcCHhHHHHHHHHHH
Confidence 9999988877664433
No 303
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.38 E-value=1.9e-12 Score=113.38 Aligned_cols=132 Identities=21% Similarity=0.217 Sum_probs=88.0
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc---CCccEEEECCeecCcc-c-ccCCCCChhhHH----------
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG-L-NRDLSFKAEDRV---------- 157 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~---~~~g~i~l~g~~~~~~-l-~~~~g~~~~~~~---------- 157 (269)
+++++++.+|++++|+|+||||||||+++|+|.+.+ +.+|.|.++|.++... . +..++|..++..
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 567899999999999999999999999999998853 1689999999875321 1 112232222210
Q ss_pred HH----HHH--------HHHHHHHHHhCCcc-------eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 158 EN----IRR--------IGEVAKLFADAGVI-------CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 158 ~~----~~~--------l~~~a~~~~~~g~~-------~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+. ... ...+...+...++. ..+...++++++| ..+++++.++++ +++|+|+..++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v--llLDEPt~~LD~~~ 160 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF--LIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEcCCccccCHHH
Confidence 00 000 00122233333442 1223346666666 689999999998 99999999999988
Q ss_pred hhhHHHHHh
Q 024315 218 PKGLYKLAR 226 (269)
Q Consensus 218 ~k~l~~~~r 226 (269)
.+.+++.++
T Consensus 161 ~~~l~~~l~ 169 (230)
T TIGR02770 161 QARVLKLLR 169 (230)
T ss_pred HHHHHHHHH
Confidence 877766554
No 304
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.38 E-value=2.4e-12 Score=112.27 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=84.8
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh----------HHHHH------
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED----------RVENI------ 160 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~----------~~~~~------ 160 (269)
+.+.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. .+..++|.+++ ..+++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 467899999999999999999999999987 4668999999976521 11111111111 00110
Q ss_pred ----------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315 161 ----------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 161 ----------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
.....+...+...++.. .+...++++++| ..+++++.++++ +++|+|+..++....+.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSV--LLLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 00011222333334422 233456666666 699999999999 9999999999999988877666
Q ss_pred hc
Q 024315 226 RE 227 (269)
Q Consensus 226 r~ 227 (269)
++
T Consensus 157 ~~ 158 (223)
T TIGR03771 157 IE 158 (223)
T ss_pred HH
Confidence 53
No 305
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.9e-12 Score=128.87 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=95.3
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR----- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~----- 156 (269)
+...++++|.+++|++++|+|+||||||||+++|++.++ +.+|.|.++|.++.. .++..++|..|+.
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 456788899999999999999999999999999999884 668999999987632 1222334333321
Q ss_pred -----HHHHH-------------HHHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -----VENIR-------------RIGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -----~~~~~-------------~l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+.+. ....+..++...++. . .+..+|+++++| .++++++.++++ +++|||+..
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l--lllDEPts~ 493 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKV--IIADEAVSA 493 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence 01110 001122344445552 1 234557777777 699999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++......+++.++
T Consensus 494 LD~~~~~~i~~ll~ 507 (623)
T PRK10261 494 LDVSIRGQIINLLL 507 (623)
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888776653
No 306
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.38 E-value=1.4e-12 Score=112.00 Aligned_cols=130 Identities=21% Similarity=0.228 Sum_probs=81.9
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---c--cc-----cCCCCChhhHHHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---G--LN-----RDLSFKAEDRVEN 159 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~--l~-----~~~g~~~~~~~~~ 159 (269)
...+.+++++++|++++|+|+||||||||++.|++.+ ++.+|.|.++|. +.. . +. ..+.+......+.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g~-i~~~~q~~~l~~~t~~enl~~~~~~~~~~ 96 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPGS-IAYVSQEPWIQNGTIRENILFGKPFDEER 96 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcCE-EEEEecCchhccCcHHHHhccCCCcCHHH
Confidence 4677889999999999999999999999999999987 466899999882 210 0 00 0011110000000
Q ss_pred HHHHHHH---HHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315 160 IRRIGEV---AKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (269)
Q Consensus 160 ~~~l~~~---a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~ 223 (269)
.....+. ...+... +.. ......++++++| ..+++++.++++ +++|+|+..++....+.+++
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l--lllDEP~~~LD~~~~~~l~~ 168 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI--YLLDDPLSAVDAHVGRHIFE 168 (204)
T ss_pred HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCHHHHHHHHH
Confidence 1010000 0111110 111 1123345666666 699999999999 99999999999887776665
No 307
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.37 E-value=2.3e-12 Score=108.86 Aligned_cols=120 Identities=20% Similarity=0.197 Sum_probs=82.7
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHH
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA 167 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a 167 (269)
.+.+.+..+|++++|++++|+||||||||||++++.. .+|.+.+++.... ..+..+.|..+ .
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~-~~~~~~~~~~q--~---------- 68 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPK-FSRNKLIFIDQ--L---------- 68 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccc-cccccEEEEhH--H----------
Confidence 3556788899999999999999999999999998842 2567777765221 11112334333 1
Q ss_pred HHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 168 KLFADAGVI-----CIACLISPYRKDR-DACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 168 ~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
..+...++. ......++++++| ..+++++.+ +++ +++|||+..++....+.+++.+++
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~l--lLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTL--FILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 112222321 2233456666666 688999999 888 999999999999998887766553
No 308
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.37 E-value=4.9e-12 Score=106.50 Aligned_cols=157 Identities=22% Similarity=0.150 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc-----cCCCCCh--------hhHHHHHHHHHHHHH
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLSFKA--------EDRVENIRRIGEVAK 168 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~-----~~~g~~~--------~~~~~~~~~l~~~a~ 168 (269)
|.+|.|.|+|-|||||++++|...+..+ -+.+..|.+...+. ...++.. ......+........
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p---~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ia 77 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEP---WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIA 77 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCC---eEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHH
Confidence 6799999999999999999999988533 56777776654222 1223321 223344555556667
Q ss_pred HHHhCCcceeeccCChHHH-HHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccc-cccCCCCCC
Q 024315 169 LFADAGVICIACLISPYRK-DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID-DPYEPPLNC 246 (269)
Q Consensus 169 ~~~~~g~~~iv~~~~~~~~-~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~-~~~e~p~~~ 246 (269)
.+.+.|..+|++....... -.+.+++++...++..|-+-||++++++|. ..|..+..+.+... +.-+.+...
T Consensus 78 a~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE------~~RgDR~~G~a~~q~~~Vh~~~~Y 151 (174)
T PF07931_consen 78 AMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRE------RARGDRPIGLAAWQAEHVHEGGRY 151 (174)
T ss_dssp HHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHH------HHHTSSSTTHHHHHTTGGGTT---
T ss_pred HHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHH------HhcCCcchHHHHHHHhhcccCCCC
Confidence 7889999998876543333 356777777777777789999999999987 55655555543222 212334457
Q ss_pred CeEEEcCCCcCHHHHHH-HHhhc
Q 024315 247 EVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 247 e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
|+.|||+ .+++++|+. |.+.|
T Consensus 152 DleVDTs-~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 152 DLEVDTS-ATSPEECAREILARL 173 (174)
T ss_dssp SEEEETT-SS-HHHHHHHHHTT-
T ss_pred CEEEECC-CCCHHHHHHHHHHHh
Confidence 8999995 889999999 77655
No 309
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.8e-12 Score=126.05 Aligned_cols=135 Identities=20% Similarity=0.294 Sum_probs=92.3
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhH--------
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDR-------- 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~-------- 156 (269)
...++++|++++|++++|+|+||||||||++.|++.++++.+|.|.++|.++.. ..+..++|.+|+.
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 456778999999999999999999999999999998853468999999976531 1112233333221
Q ss_pred ---HHHHH-----H-----------H-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 157 ---VENIR-----R-----------I-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 157 ---~~~~~-----~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
.+.+. . . ..+...+...++. . .+..+|+++++| ..+++++.++++ +++|||+
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~l--llLDEPt 433 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKI--LILDEPT 433 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCE--EEEcCCC
Confidence 00000 0 0 1122334444442 1 234557777777 688999999999 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..++....+.+++.++
T Consensus 434 ~~LD~~~~~~l~~~l~ 449 (506)
T PRK13549 434 RGIDVGAKYEIYKLIN 449 (506)
T ss_pred CCcCHhHHHHHHHHHH
Confidence 9999998888665544
No 310
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=3.1e-12 Score=114.06 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=92.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCcc------EEEECCeecCc----ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL------TYILDGDNCRH----GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g------~i~l~g~~~~~----~l~~~~ 149 (269)
.++.+.++.......+++.+.+|++++|+|+||||||||++.|+|.+. +.+| .+.++|.++.. ..+..+
T Consensus 14 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i 92 (257)
T PRK14246 14 SRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV 92 (257)
T ss_pred eeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCcCceeEcCEEEECCcccccCCHHHHhcce
Confidence 456667767777889999999999999999999999999999999875 4454 44444444321 111122
Q ss_pred CCChhh--------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCC
Q 024315 150 SFKAED--------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 150 g~~~~~--------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
+|.+++ ..+++.. . ......+...++. ......++++++| ..+++++.++
T Consensus 93 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P 172 (257)
T PRK14246 93 GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKP 172 (257)
T ss_pred EEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 222211 0111110 0 0112233333432 1223345566666 6999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++ +++|+|+..++....+.+.+.++
T Consensus 173 ~l--lllDEPt~~LD~~~~~~l~~~l~ 197 (257)
T PRK14246 173 KV--LLMDEPTSMIDIVNSQAIEKLIT 197 (257)
T ss_pred CE--EEEcCCCccCCHHHHHHHHHHHH
Confidence 99 99999999999888877776654
No 311
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.37 E-value=2.6e-12 Score=124.77 Aligned_cols=143 Identities=22% Similarity=0.311 Sum_probs=98.2
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhH
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDR 156 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~ 156 (269)
+++.+..+...+.+++.+.+|++++|+|+||||||||++.|++.+. +.+|.|.++|.++.. .++..++|.+|+.
T Consensus 258 l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 258 LKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred EEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 4455544556789999999999999999999999999999999884 668999999976532 1122344433331
Q ss_pred -----------HHHHH-----------------H-HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCc
Q 024315 157 -----------VENIR-----------------R-IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 157 -----------~~~~~-----------------~-l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
.+.+. . ..+....+...++. . .+...|+++++| ..+++++.++++
T Consensus 337 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~l 416 (501)
T PRK10762 337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV 416 (501)
T ss_pred ccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 01110 0 01122334444442 1 233456777777 689999999998
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++....+.+.+.+++
T Consensus 417 --llLDEPt~~LD~~~~~~l~~~l~~ 440 (501)
T PRK10762 417 --LILDEPTRGVDVGAKKEIYQLINQ 440 (501)
T ss_pred --EEEcCCCCCCCHhHHHHHHHHHHH
Confidence 999999999999988887666543
No 312
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.37 E-value=8e-12 Score=103.40 Aligned_cols=149 Identities=21% Similarity=0.266 Sum_probs=91.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (269)
Q Consensus 105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv 179 (269)
+.|+|++||||||+++.|++.+. .+++++|++... ...+.++..++...++..+.+.+..+...+...++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-----~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi 75 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-----AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII 75 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-----CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999873 467899887432 11223445555556666665555545455554566
Q ss_pred ccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcc---ccccccccccCCCCC---CCeEEEcC
Q 024315 180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV---KGFTGIDDPYEPPLN---CEVGVHVW 253 (269)
Q Consensus 180 ~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~---~~~~~i~~~~e~p~~---~e~~id~~ 253 (269)
+.+...+..|+.++.. .+.+..+++++|.+.|.+|..+ |.+.. ..+..+...++.|.. .-.+||++
T Consensus 76 ~~t~~~~~~r~~~~~~--~~~~~~i~l~~~~e~~~~R~~~------R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id~~ 147 (163)
T TIGR01313 76 TCSALKRHYRDILREA--EPNLHFIYLSGDKDVILERMKA------RKGHFMKADMLESQFAALEEPLADETDVLRVDID 147 (163)
T ss_pred EecccHHHHHHHHHhc--CCCEEEEEEeCCHHHHHHHHHh------ccCCCCCHHHHHHHHHHhCCCCCCCCceEEEECC
Confidence 6665556666666632 2456668999999999998843 33321 112222233455532 33678874
Q ss_pred CCcCHHHHHH-HHhhc
Q 024315 254 YRFELAETWR-ITKWL 268 (269)
Q Consensus 254 ~~~~~~~~~~-i~~~~ 268 (269)
-+++++.. |.+.|
T Consensus 148 --~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 148 --QPLEGVEEDCIAVV 161 (163)
T ss_pred --CCHHHHHHHHHHHH
Confidence 44656555 65543
No 313
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.37 E-value=3e-12 Score=124.86 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=96.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEEC---------------------
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD--------------------- 137 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~--------------------- 137 (269)
.++++.+......+.+++.+.+|++++|+|+||||||||+++|++.+. .+.+|.|.++
T Consensus 4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~ 83 (520)
T TIGR03269 4 KNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCP 83 (520)
T ss_pred EEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccc
Confidence 356666656667889999999999999999999999999999999863 4668888886
Q ss_pred --CeecC--------------cccccCCCCChhh---------HHHHHHH------------HHHHHHHHHhCCcce---
Q 024315 138 --GDNCR--------------HGLNRDLSFKAED---------RVENIRR------------IGEVAKLFADAGVIC--- 177 (269)
Q Consensus 138 --g~~~~--------------~~l~~~~g~~~~~---------~~~~~~~------------l~~~a~~~~~~g~~~--- 177 (269)
|.++. ..++..+++..++ ..+.+.. ...+...+...++..
T Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 163 (520)
T TIGR03269 84 VCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT 163 (520)
T ss_pred cccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh
Confidence 22110 0011122322221 0111100 012223344445422
Q ss_pred -eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 178 -IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 178 -iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.+...++++++| ..+++++.++++ +++|||+..++....+.+.+.++
T Consensus 164 ~~~~~LSgGq~qrv~iA~al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~ 212 (520)
T TIGR03269 164 HIARDLSGGEKQRVVLARQLAKEPFL--FLADEPTGTLDPQTAKLVHNALE 212 (520)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCE--EEeeCCcccCCHHHHHHHHHHHH
Confidence 234557777777 699999999999 99999999999999888654443
No 314
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.36 E-value=5.1e-12 Score=103.06 Aligned_cols=131 Identities=27% Similarity=0.336 Sum_probs=85.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHH-HHhCCcce
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKL-FADAGVIC 177 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~-~~~~g~~~ 177 (269)
+++|+|++||||||+++.|+..+. ..++++|.++.. ...+..+...+...+...+.+.... +...+..+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 75 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG-----APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV 75 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC-----CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence 478999999999999999999753 457888888753 1222334444344444444333222 22345556
Q ss_pred eeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCC
Q 024315 178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLN 245 (269)
Q Consensus 178 iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~ 245 (269)
+++.....+..++.+++++....+..+++++|.+.+.+|..+ |.++..+ +..+.+.||+|++
T Consensus 76 Vid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~------R~~~~~~~~~~~~~~~~~~~p~~ 140 (150)
T cd02021 76 VVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAA------RKGHFMPADLLDSQFETLEPPGE 140 (150)
T ss_pred EEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHh------cccCCCCHHHHHHHHHHhcCCCC
Confidence 666665566777778777633456679999999999998843 3344322 4455578899986
No 315
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.36 E-value=1.7e-12 Score=125.24 Aligned_cols=134 Identities=25% Similarity=0.292 Sum_probs=92.1
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c----ccc---------cCCCCC
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H----GLN---------RDLSFK 152 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~----~l~---------~~~g~~ 152 (269)
.+.+.+++||.+.+||+++|+|+||||||||+++|++++. |.+|.+.++|.++. . .++ +..+++
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence 4778899999999999999999999999999999999885 57899999997621 0 011 111122
Q ss_pred hhhH-----HHHH---------HHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 153 AEDR-----VENI---------RRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 153 ~~~~-----~~~~---------~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
+... .+-+ .+-..+..++..-++.. .....|+++++| .++|+++.+|++ +.+|||+..
T Consensus 382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l--li~DEp~Sa 459 (539)
T COG1123 382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL--LILDEPVSA 459 (539)
T ss_pred ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE--EEecCCccc
Confidence 1100 0000 01112344444444432 234457778888 699999999999 999999999
Q ss_pred HHhcChhhHHHH
Q 024315 213 CEARDPKGLYKL 224 (269)
Q Consensus 213 l~~R~~k~l~~~ 224 (269)
++.-......+.
T Consensus 460 LDvsvqa~VlnL 471 (539)
T COG1123 460 LDVSVQAQVLNL 471 (539)
T ss_pred cCHHHHHHHHHH
Confidence 998887764433
No 316
>PLN03211 ABC transporter G-25; Provisional
Probab=99.36 E-value=1.9e-12 Score=129.48 Aligned_cols=143 Identities=19% Similarity=0.149 Sum_probs=96.8
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECCeecCcccccCCCCChhhH----
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCRHGLNRDLSFKAEDR---- 156 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g~~~~~~l~~~~g~~~~~~---- 156 (269)
+...+......+++++.+++|++++|+||||||||||+++|+|.+.+. .+|.|.++|.++.....+.++|..|+.
T Consensus 74 l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~ 153 (659)
T PLN03211 74 ETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153 (659)
T ss_pred ccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCC
Confidence 344444566788899999999999999999999999999999988532 379999999876432222233333211
Q ss_pred ----HHHHHH---------------HHHHHHHHHhCCccee---------eccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 157 ----VENIRR---------------IGEVAKLFADAGVICI---------ACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 157 ----~~~~~~---------------l~~~a~~~~~~g~~~i---------v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
.+.+.. ...+..++...|+... ....++++++| ..+++++.++++ +++|
T Consensus 154 ~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i--LlLD 231 (659)
T PLN03211 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL--LILD 231 (659)
T ss_pred cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE--EEEe
Confidence 111110 0112233444454221 22356666666 699999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
||+..+|......+.+.++
T Consensus 232 EPtsgLD~~~~~~l~~~L~ 250 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLG 250 (659)
T ss_pred CCCCCcCHHHHHHHHHHHH
Confidence 9999999988877665544
No 317
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=2.7e-12 Score=107.19 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=93.6
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec--Cc-----------cccc
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH-----------GLNR 147 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~--~~-----------~l~~ 147 (269)
+++..+++..-..++||.+.+||+++|+|+||||||||+++|.+.+. |..|++....++- +. -++.
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RT 89 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRT 89 (258)
T ss_pred hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence 34444556666678899999999999999999999999999999994 5577766554221 10 1234
Q ss_pred CCCCChhhHH----------------------HHHHHHHHHHHHH-Hh----CCcce-ee-ccCChHHHHHHHHHHhCCC
Q 024315 148 DLSFKAEDRV----------------------ENIRRIGEVAKLF-AD----AGVIC-IA-CLISPYRKDRDACRSMLPE 198 (269)
Q Consensus 148 ~~g~~~~~~~----------------------~~~~~l~~~a~~~-~~----~g~~~-iv-~~~~~~~~~r~~ar~ll~~ 198 (269)
+|||..|..+ +.+..+.+.+..+ .+ ...+. .. +|+.+.++..+++|.++..
T Consensus 90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~ 169 (258)
T COG4107 90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTR 169 (258)
T ss_pred ccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccC
Confidence 5555544221 2222232322221 11 11111 22 3444555555899999999
Q ss_pred CCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+.+ +|+|+|+..++--...++.+..|
T Consensus 170 PrL--vfMDEPTGGLDVSVQARLLDllr 195 (258)
T COG4107 170 PRL--VFMDEPTGGLDVSVQARLLDLLR 195 (258)
T ss_pred Cce--EEecCCCCCcchhhHHHHHHHHH
Confidence 998 99999999999888888776655
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.36 E-value=4e-12 Score=123.03 Aligned_cols=146 Identities=14% Similarity=0.081 Sum_probs=97.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
.++.+.+......+++++.+++|++++|+|+||||||||+++|+|.++++.+|.|.++|.++.. ..+..++|..+
T Consensus 264 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 343 (490)
T PRK10938 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSS 343 (490)
T ss_pred eceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECH
Confidence 4555555555567889999999999999999999999999999997632257999999865421 11223444443
Q ss_pred hHH----------HHHH----------------HHHHHHHHHHhCCcce-e----eccCChHHHHH-HHHHHhCCCCCcc
Q 024315 155 DRV----------ENIR----------------RIGEVAKLFADAGVIC-I----ACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 155 ~~~----------~~~~----------------~l~~~a~~~~~~g~~~-i----v~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+.. +... .-..+...+...++.. . +...++++++| ..+++++.++++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l- 422 (490)
T PRK10938 344 SLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTL- 422 (490)
T ss_pred HHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 211 0000 0001222333444432 1 23456667776 689999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHhc
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++....+.+++.+++
T Consensus 423 -llLDEPt~gLD~~~~~~l~~~L~~ 446 (490)
T PRK10938 423 -LILDEPLQGLDPLNRQLVRRFVDV 446 (490)
T ss_pred -EEEcCccccCCHHHHHHHHHHHHH
Confidence 999999999999988887765543
No 319
>PLN03130 ABC transporter C family member; Provisional
Probab=99.35 E-value=1.5e-12 Score=141.06 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=99.7
Q ss_pred ceEEeeCceee-------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315 81 NILWHKNSVDK-------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL 149 (269)
Q Consensus 81 ~~~~~~~~v~~-------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~ 149 (269)
.+++++..++| .++.++++++|+.++|+|+||||||||+++|.|++ ++.+|.|.+||.++++ .+++.+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEecccCCHHHHHhcc
Confidence 34555444444 45669999999999999999999999999999988 5778999999999864 445555
Q ss_pred CCChhhH-------HHHHHHH-----HHHHHHHHh-----------CCccee----eccCChHHHHH-HHHHHhCCCCCc
Q 024315 150 SFKAEDR-------VENIRRI-----GEVAKLFAD-----------AGVICI----ACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 150 g~~~~~~-------~~~~~~l-----~~~a~~~~~-----------~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
++.+|+- ++++... .++...+.. .|+... ....+++++|| ..+|+++.++++
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 5544432 1111100 011111111 233222 23457777777 699999999999
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+.+||++..+|....+.+.+.+++
T Consensus 1396 --LILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1396 --LVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred --EEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999888777766664
No 320
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.35 E-value=4.5e-12 Score=123.45 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=93.0
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhH--------
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDR-------- 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~-------- 156 (269)
...+++++.+++|++++|+|+||||||||++.|++.+ .+.+|.|.++|.++... .+..++|.+++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 3468899999999999999999999999999999987 46689999999876321 122334433321
Q ss_pred ---HHHHH--------------HH-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 ---VENIR--------------RI-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 ---~~~~~--------------~l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+.+. .. ..+...+...++. . .+..+++++++| ..+++++.++++ +++|||+..
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~l--LlLDEPt~g 433 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQL--LIVDEPTRG 433 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCE--EEECCCCcC
Confidence 01100 00 0122333444442 1 234456677766 688999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++....+.+++.++
T Consensus 434 LD~~~~~~l~~~l~ 447 (510)
T PRK15439 434 VDVSARNDIYQLIR 447 (510)
T ss_pred cChhHHHHHHHHHH
Confidence 99999888776654
No 321
>PLN03232 ABC transporter C family member; Provisional
Probab=99.34 E-value=2.2e-12 Score=139.18 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=99.3
Q ss_pred ceEEeeCceee-------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315 81 NILWHKNSVDK-------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL 149 (269)
Q Consensus 81 ~~~~~~~~v~~-------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~ 149 (269)
.+++++..++| .++.++++++|+.++|+|+||||||||++.|.|.+ ++.+|.|.+||.++.+ .+++.+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhhhCCHHHHHhhc
Confidence 35555555444 45669999999999999999999999999999988 5779999999998863 344444
Q ss_pred CCChhhH-------HHHH-----------HHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCc
Q 024315 150 SFKAEDR-------VENI-----------RRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 150 g~~~~~~-------~~~~-----------~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
++.+|+. ++++ ....+.+ .... ..|+... ....+++++|| ..+|+++.++++
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 4444431 1111 1101111 0111 1233222 23457778877 699999999999
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+.+|||++.+|....+.+.+.+++
T Consensus 1393 --LILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1393 --LVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred --EEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999887777766664
No 322
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.34 E-value=3.6e-12 Score=123.96 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=92.6
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhH---------
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDR--------- 156 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~--------- 156 (269)
..+++++++++|++++|+|+||||||||++.|++.++ +.+|.|.++|.++.. .++..++|.+|+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 4678899999999999999999999999999999884 668999999976532 1122233333320
Q ss_pred --HHHHH--------------------HH-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 157 --VENIR--------------------RI-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 157 --~~~~~--------------------~l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
.+.+. .. ......+...++. . .+..+|+++++| ..+++++.++++ +++|
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~l--LlLD 434 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEV--IIFD 434 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCE--EEEC
Confidence 01100 00 1122334444442 2 234457777777 689999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
||+..++....+.+.+.++
T Consensus 435 EPt~~LD~~~~~~l~~~l~ 453 (510)
T PRK09700 435 EPTRGIDVGAKAEIYKVMR 453 (510)
T ss_pred CCCCCcCHHHHHHHHHHHH
Confidence 9999999998888776654
No 323
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.8e-12 Score=108.00 Aligned_cols=53 Identities=28% Similarity=0.283 Sum_probs=46.6
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecC
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCR 142 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~ 142 (269)
....++++++++|++.+|+||||||||||+++|+|.-. ...+|.|+|+|.++.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 55677899999999999999999999999999999542 345899999999986
No 324
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.33 E-value=3.6e-12 Score=137.75 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=100.5
Q ss_pred ceEEeeCceee-------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315 81 NILWHKNSVDK-------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL 149 (269)
Q Consensus 81 ~~~~~~~~v~~-------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~ 149 (269)
.+++++..++| .+++++++++|+.++|+|++|||||||+++|.|++ ++.+|.|.+||.+++. .+++.+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHHhcC
Confidence 45555555555 45668999999999999999999999999999988 5778999999999864 445445
Q ss_pred CCChhhH-------HHHHHHH-----HHHHHHHHh-----------CCcceee----ccCChHHHHH-HHHHHhCCCCCc
Q 024315 150 SFKAEDR-------VENIRRI-----GEVAKLFAD-----------AGVICIA----CLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 150 g~~~~~~-------~~~~~~l-----~~~a~~~~~-----------~g~~~iv----~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
++.+|+- ++++... .++...+.. .|+...+ ...+++++|| ..+|+++.++++
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 5444431 1111100 011111111 2333222 3457777777 699999999999
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+.+|||++.+|....+.+.+.+++
T Consensus 1443 --LiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1443 --LVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred --EEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999888877777664
No 325
>PTZ00243 ABC transporter; Provisional
Probab=99.33 E-value=3.2e-12 Score=138.18 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=100.2
Q ss_pred ceEEeeCceee-------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315 81 NILWHKNSVDK-------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL 149 (269)
Q Consensus 81 ~~~~~~~~v~~-------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~ 149 (269)
.++++++.++| .++++|++++|+.++|+|++|||||||+++|.|++ ++.+|.|++||.++.. .+++.+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccCCHHHHHhcc
Confidence 35555555554 45678999999999999999999999999999988 5678999999999863 455555
Q ss_pred CCChhhH-------HHHHHHH-----HHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCC-CC
Q 024315 150 SFKAEDR-------VENIRRI-----GEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPE-GD 200 (269)
Q Consensus 150 g~~~~~~-------~~~~~~l-----~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~-~~ 200 (269)
++.+|+- ++++... .++...+... |+... ....+++++|| .++|+++.+ ++
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 5555431 1222110 1111122222 22211 23457778777 799999985 78
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +.+|||++.+|....+.+.+.+++
T Consensus 1467 I--LlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1467 F--ILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 8 999999999999888887766654
No 326
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.33 E-value=4.7e-12 Score=126.11 Aligned_cols=143 Identities=18% Similarity=0.153 Sum_probs=95.3
Q ss_pred cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------------
Q 024315 80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------------ 143 (269)
Q Consensus 80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------------ 143 (269)
.++++.+. .+...++++|.+.+|++++|+|+||||||||+++|++.+. +.+|.|.++|..+..
T Consensus 16 ~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~~~~~~~ 94 (623)
T PRK10261 16 ENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVIELSEQS 94 (623)
T ss_pred eceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEeccccccccccccCC
Confidence 34555543 2457788999999999999999999999999999999884 568898888753210
Q ss_pred -----ccc-cCCCCChhhH----------HHHHHH-------------HHHHHHHHHhCCcc-------eeeccCChHHH
Q 024315 144 -----GLN-RDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI-------CIACLISPYRK 187 (269)
Q Consensus 144 -----~l~-~~~g~~~~~~----------~~~~~~-------------l~~~a~~~~~~g~~-------~iv~~~~~~~~ 187 (269)
.++ ..++|..|+. .+++.. ..++..++...++. ..+..++++++
T Consensus 95 ~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~ 174 (623)
T PRK10261 95 AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMR 174 (623)
T ss_pred HHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHH
Confidence 011 1233322211 111110 01222344455552 12344677777
Q ss_pred HH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315 188 DR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 188 ~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
+| .++++++.++++ +++|||+..++....+.+.+.+
T Consensus 175 QRv~iA~AL~~~P~l--LllDEPt~~LD~~~~~~l~~ll 211 (623)
T PRK10261 175 QRVMIAMALSCRPAV--LIADEPTTALDVTIQAQILQLI 211 (623)
T ss_pred HHHHHHHHHhCCCCE--EEEeCCCCccCHHHHHHHHHHH
Confidence 77 699999999999 9999999999998877755443
No 327
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.33 E-value=7.8e-12 Score=112.06 Aligned_cols=133 Identities=19% Similarity=0.146 Sum_probs=85.8
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c--ccccCCCCChhhHHHHH----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H--GLNRDLSFKAEDRVENI---- 160 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~--~l~~~~g~~~~~~~~~~---- 160 (269)
+...+.+++.+++|++++|+|+||||||||+++|+|.++ +.+|.+.++|.... . .+... ++..+.....
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~--~tv~enl~~~~~~~ 113 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNGEVSVIAISAGLSGQ--LTGIENIEFKMLCM 113 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEeEEecccCCCCC--CcHHHHHHHHHHHc
Confidence 456678899999999999999999999999999999884 66899999885311 1 11111 1111110000
Q ss_pred ----HHHH-HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 161 ----RRIG-EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 161 ----~~l~-~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.... ....++...++.. .+...++++++| ..+++++.++++ +++|+|+..++....+.+++.+.
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~i--LlLDEPt~gLD~~~~~~l~~~L~ 187 (264)
T PRK13546 114 GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDI--LVIDEALSVGDQTFAQKCLDKIY 187 (264)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCE--EEEeCccccCCHHHHHHHHHHHH
Confidence 0000 0111222222222 233456666666 688999999999 99999999999887777665543
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.33 E-value=9e-12 Score=110.52 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=82.9
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhHHHHH-HHH----HHHH
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENI-RRI----GEVA 167 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~~~~-~~l----~~~a 167 (269)
++.+.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|..+.. ........+..+..... ... ....
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 97 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT 97 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence 3455689999999999999999999999988 4668999999854321 11101112222211110 000 0112
Q ss_pred HHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 168 KLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 168 ~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.++...++.. .+..+++++++| ..+++++.++++ +++|||+..++...+..+.+.++
T Consensus 98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l--lllDEPt~~LD~~~~~~l~~~l~ 159 (246)
T cd03237 98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI--YLLDEPSAYLDVEQRLMASKVIR 159 (246)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 2333334422 233456666666 699999999999 99999999999998887765554
No 329
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1e-11 Score=121.40 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=96.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCcccccC----CCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD----LSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~~l~~~----~g~~~~ 154 (269)
.++++.+......++++|.+.+|++++|+|+||||||||+++|++.++ +.+|.|.+++.. +. .+... ..++..
T Consensus 5 ~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~-~~~q~~~~~~~~tv~ 82 (530)
T PRK15064 5 ANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-PSAGNVSLDPNERLG-KLRQDQFAFEEFTVL 82 (530)
T ss_pred EEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEE-EEeccCCcCCCCcHH
Confidence 456666656667899999999999999999999999999999999884 568999888632 11 00000 011111
Q ss_pred hHHHH-----H------------------------------------HHHHHHHHHHHhCCcce-----eeccCChHHHH
Q 024315 155 DRVEN-----I------------------------------------RRIGEVAKLFADAGVIC-----IACLISPYRKD 188 (269)
Q Consensus 155 ~~~~~-----~------------------------------------~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~ 188 (269)
+.... . ..-..+...+...++.. .+...|+++++
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q 162 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL 162 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH
Confidence 10000 0 00011223344444421 23445677777
Q ss_pred H-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 189 r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
| ..+++++.++++ +++|||+..++....+.+.+.+++
T Consensus 163 rv~lA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 163 RVLLAQALFSNPDI--LLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred HHHHHHHHhcCCCE--EEEcCCCcccCHHHHHHHHHHHHh
Confidence 7 688999999999 999999999999998888877764
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=7e-12 Score=125.20 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=97.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec----Cccc----ccCCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC----RHGL----NRDLSF 151 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~----~~~l----~~~~g~ 151 (269)
.|+++.++.....++++|.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.+++... .... ...+++
T Consensus 5 ~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (638)
T PRK10636 5 SSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSYTFPGNWQLAWVNQETPALPQPALEY 83 (638)
T ss_pred EEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEEEecCCCCCCCCHHHH
Confidence 46777777777889999999999999999999999999999999977 46689999887531 1000 001111
Q ss_pred ChhhHHH------------------HH----HH---------HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHH
Q 024315 152 KAEDRVE------------------NI----RR---------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRS 194 (269)
Q Consensus 152 ~~~~~~~------------------~~----~~---------l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ 194 (269)
..+.... .+ .. -..+..++...|+. . .+...|+++++| ..++.
T Consensus 84 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~a 163 (638)
T PRK10636 84 VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQA 163 (638)
T ss_pred HHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHH
Confidence 1111000 00 00 01122334444442 1 233456677777 68999
Q ss_pred hCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 195 ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++.++++ +++|+|+..++......+.+.++.
T Consensus 164 L~~~P~l--LLLDEPtn~LD~~~~~~L~~~L~~ 194 (638)
T PRK10636 164 LICRSDL--LLLDEPTNHLDLDAVIWLEKWLKS 194 (638)
T ss_pred HccCCCE--EEEcCCCCcCCHHHHHHHHHHHHh
Confidence 9999999 999999999999888887777664
No 331
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.32 E-value=6.2e-12 Score=122.88 Aligned_cols=134 Identities=17% Similarity=0.233 Sum_probs=93.7
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR----- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~----- 156 (269)
....+++++.+.+|++++|+|+||||||||+++|++.++ .+|.|.++|.++.. .++..++|.+|+.
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 456788999999999999999999999999999999874 57999999976532 0122334433321
Q ss_pred -----HHHHHH--------------HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 157 -----VENIRR--------------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 157 -----~~~~~~--------------l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
.+++.. -..+...+...++. . .+..+++++++| ..+++++.++++ +++|||+.
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--lllDEPt~ 454 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL--IILDEPTS 454 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCE--EEeeCCcc
Confidence 011100 01122334444542 1 234456777777 689999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++....+.+++.++
T Consensus 455 ~LD~~~~~~l~~~l~ 469 (529)
T PRK15134 455 SLDKTVQAQILALLK 469 (529)
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999888776665
No 332
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.31 E-value=5.6e-12 Score=122.93 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=90.9
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC-Cee---cCc-------ccccCCCCChhhH-
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDN---CRH-------GLNRDLSFKAEDR- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~-g~~---~~~-------~l~~~~g~~~~~~- 156 (269)
....++++|.+++|++++|+|+||||||||+++|++.++ +.+|.|.++ |.+ +.. .++..++|.+++.
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 345678899999999999999999999999999999884 668999995 432 110 1112223322211
Q ss_pred -------HHHHHH----------H-HHHHHHHHhCCcce---------eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 157 -------VENIRR----------I-GEVAKLFADAGVIC---------IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 157 -------~~~~~~----------l-~~~a~~~~~~g~~~---------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
.+.+.. . ..+...+...++.. .+..+++++++| ..+++++.++++ +++||
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l--LllDE 453 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRI--VILDE 453 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence 111110 0 11223344455531 233456777777 689999999999 99999
Q ss_pred ChhHHHhcChhhHHHHHh
Q 024315 209 PLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 209 p~~~l~~R~~k~l~~~~r 226 (269)
|+..++....+.+.+.++
T Consensus 454 Pt~~LD~~~~~~l~~~l~ 471 (520)
T TIGR03269 454 PTGTMDPITKVDVTHSIL 471 (520)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999999888776654
No 333
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.31 E-value=5.6e-12 Score=111.75 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=88.3
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH--------HH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR--------VE 158 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~--------~~ 158 (269)
..+.++|++.+|++++|+|+||||||||+++|+|.++ + +|.+.++|.++.. .++..++|.+++. .+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 5678899999999999999999999999999999874 4 7999999987642 1111122222210 11
Q ss_pred HHHH-----------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCC-------CCCccEEEEeCChhHHHh
Q 024315 159 NIRR-----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP-------EGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 159 ~~~~-----------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~-------~~~~~~i~ld~p~~~l~~ 215 (269)
++.. .......+...++.. .+...++++++| ..+++++. ++++ +++|+|+..++.
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l--lllDEPt~~LD~ 166 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL--LLLDEPMNSLDV 166 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE--EEEcCCcccCCH
Confidence 1100 011222333334422 234456666666 68888886 4577 999999999999
Q ss_pred cChhhHHHHHhc
Q 024315 216 RDPKGLYKLARE 227 (269)
Q Consensus 216 R~~k~l~~~~r~ 227 (269)
...+.+++.+++
T Consensus 167 ~~~~~l~~~L~~ 178 (248)
T PRK03695 167 AQQAALDRLLSE 178 (248)
T ss_pred HHHHHHHHHHHH
Confidence 988887766553
No 334
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.31 E-value=1.6e-11 Score=120.83 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=94.3
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCcccccCC----CCCh
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL----SFKA 153 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~~l~~~~----g~~~ 153 (269)
.++++.+. .....++++|++.+|++++|+|+||||||||+++|+|.+. +.+|.|.+++.. +.. +..+. .++.
T Consensus 10 ~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~~~~i~~-v~Q~~~~~~~~tv 87 (556)
T PRK11819 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFEGEARPAPGIKVGY-LPQEPQLDPEKTV 87 (556)
T ss_pred eeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEE-EecCCCCCCCCcH
Confidence 46777765 5667889999999999999999999999999999999884 567888876421 110 00000 1111
Q ss_pred hhHHHH-HH----------H----------------------------------HHHHHHHHHhCCcc---eeeccCChH
Q 024315 154 EDRVEN-IR----------R----------------------------------IGEVAKLFADAGVI---CIACLISPY 185 (269)
Q Consensus 154 ~~~~~~-~~----------~----------------------------------l~~~a~~~~~~g~~---~iv~~~~~~ 185 (269)
.+.... .. . ..++...+...++. ..+...+++
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG 167 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG 167 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence 111100 00 0 00111122223331 122345667
Q ss_pred HHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 186 RKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 186 ~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++| ..+++++.++++ +++|||+..++....+.+.+.+++
T Consensus 168 qkqrv~la~al~~~p~v--lLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 168 ERRRVALCRLLLEKPDM--LLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred HHHHHHHHHHHhCCCCE--EEEcCCCCcCChHHHHHHHHHHHh
Confidence 7676 689999999999 999999999999998888877765
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.31 E-value=2.2e-12 Score=138.58 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=95.8
Q ss_pred cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE-CCeecCc----ccccCCCC
Q 024315 80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL-DGDNCRH----GLNRDLSF 151 (269)
Q Consensus 80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l-~g~~~~~----~l~~~~g~ 151 (269)
.++++.++. ....+++++.+++|++++|+|+||||||||+++|+|++ ++.+|.|++ +|.++.. .++..+++
T Consensus 386 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~ 464 (1466)
T PTZ00265 386 KNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLKDINLKWWRSKIGV 464 (1466)
T ss_pred EEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchhhCCHHHHHHhccE
Confidence 345555532 23456779999999999999999999999999999988 577999999 4565532 23444555
Q ss_pred ChhhH-------HHHHHHH-------------------------------------------------------------
Q 024315 152 KAEDR-------VENIRRI------------------------------------------------------------- 163 (269)
Q Consensus 152 ~~~~~-------~~~~~~l------------------------------------------------------------- 163 (269)
.+|+. .+++..-
T Consensus 465 V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 544 (1466)
T PTZ00265 465 VSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTI 544 (1466)
T ss_pred ecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccC
Confidence 54431 1111100
Q ss_pred --HHHHHHHHhC-----------Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315 164 --GEVAKLFADA-----------GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 164 --~~~a~~~~~~-----------g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
.++....... |.. .-...+++++++| .++|+++.++++ +++|||+..++....+.+.+.+
T Consensus 545 ~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~I--LlLDEpTSaLD~~se~~i~~~L 622 (1466)
T PTZ00265 545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKI--LILDEATSSLDNKSEYLVQKTI 622 (1466)
T ss_pred CHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHHHHHHHHHH
Confidence 0001111111 111 1123457777777 799999999999 9999999999998888766555
Q ss_pred h
Q 024315 226 R 226 (269)
Q Consensus 226 r 226 (269)
+
T Consensus 623 ~ 623 (1466)
T PTZ00265 623 N 623 (1466)
T ss_pred H
Confidence 4
No 336
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.6e-11 Score=108.89 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=91.6
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC-C---ccEEEECCeecCc-------ccc-cCCCCChhh
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-G---KLTYILDGDNCRH-------GLN-RDLSFKAED 155 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~---~g~i~l~g~~~~~-------~l~-~~~g~~~~~ 155 (269)
.+.+.+++||.+.+||+++|+|.|||||||++++|+++++.+ + +|.|.|+|.++.. .++ +.+++..|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 588999999999999999999999999999999999999732 2 5899999997642 111 122333332
Q ss_pred H--------------HHHHHH----------HHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 156 R--------------VENIRR----------IGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 156 ~--------------~~~~~~----------l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
- .+.++. ......++...++.. +.-..+++..|| -++.+++.++++
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L-- 174 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL-- 174 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE--
Confidence 1 111111 112223444444422 222346666777 588999999999
Q ss_pred EEEeCChhHHHhcChhhHH
Q 024315 204 VFMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~ 222 (269)
++.|||+..||.-.+.++.
T Consensus 175 lIADEPTTALDvt~QaqIl 193 (316)
T COG0444 175 LIADEPTTALDVTVQAQIL 193 (316)
T ss_pred EEeCCCcchhhHHHHHHHH
Confidence 9999999999988877744
No 337
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.31 E-value=1.2e-11 Score=107.21 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=81.4
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE-ECCeecCcccccCC--CCChhhHHHHHHHH----
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRDL--SFKAEDRVENIRRI---- 163 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~-l~g~~~~~~l~~~~--g~~~~~~~~~~~~l---- 163 (269)
..+++++.+++|++++|+|+||||||||++.|++.+ .+.+|.+. +++..+.-+....+ .++..+........
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 356788999999999999999999999999999987 46688886 77765421110000 11222221111000
Q ss_pred -HHHH-HHHHhCCc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 164 -GEVA-KLFADAGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 164 -~~~a-~~~~~~g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
.+.. ......++ ...+...++++++| ..+++++.++++ +++|+|+..++....+.+...
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~l--lllDEP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRL--YIADGKLYTGDNATQLRMQAA 146 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCE--EEECCCCccCCHHHHHHHHHH
Confidence 0000 01111111 11223345556666 689999999998 999999988888776666554
No 338
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.3e-11 Score=119.57 Aligned_cols=133 Identities=18% Similarity=0.242 Sum_probs=91.1
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHH--------
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRV-------- 157 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~-------- 157 (269)
..+.+++.+.+|++++|+|+||||||||+++|.+.+ .+.+|.|.++|.++... ++..++|.++++.
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 467889999999999999999999999999999988 46789999999776421 1222333333210
Q ss_pred --------HHHHH------------H-HHHHHHHHhCCc-----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 158 --------ENIRR------------I-GEVAKLFADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 158 --------~~~~~------------l-~~~a~~~~~~g~-----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
+.+.. . ......+...++ ...+...++++++| ..++.++.++++ +++|||+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~i--llLDEPt 419 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEI--LMLDEPT 419 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCE--EEEcCCC
Confidence 00000 0 001112222233 11234456777777 688999999999 9999999
Q ss_pred hHHHhcChhhHHHHHh
Q 024315 211 QVCEARDPKGLYKLAR 226 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r 226 (269)
..++...++.+++.++
T Consensus 420 ~gLD~~~~~~~~~~l~ 435 (491)
T PRK10982 420 RGIDVGAKFEIYQLIA 435 (491)
T ss_pred cccChhHHHHHHHHHH
Confidence 9999999888776653
No 339
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.7e-11 Score=102.12 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=91.4
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc---c-------CCC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---R-------DLS 150 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~---~-------~~g 150 (269)
++..+....+.-.+.+|++.+|+.+.|.|+||||||||+++|+|++ .|..|.|.+++.++..... . ..|
T Consensus 7 ~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl-~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~g 85 (209)
T COG4133 7 NLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL-RPDAGEVYWQGEPIQNVRESYHQALLYLGHQPG 85 (209)
T ss_pred hhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc-CCCCCeEEecCCCCccchhhHHHHHHHhhcccc
Confidence 3444444555566778999999999999999999999999999998 5678999999887653111 1 112
Q ss_pred ----CChhhHHHHHHHHHH------HHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 151 ----FKAEDRVENIRRIGE------VAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 151 ----~~~~~~~~~~~~l~~------~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
++..|..+.+..+.. +...+...|+..+ +..+|.+++.| ..+|-.+...++ .++|||+..+++
T Consensus 86 iK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL--WiLDEP~taLDk 163 (209)
T COG4133 86 IKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL--WILDEPFTALDK 163 (209)
T ss_pred ccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc--eeecCcccccCH
Confidence 222233233333211 2223333444322 22335555555 577777888888 789999999998
Q ss_pred cChhhHHH
Q 024315 216 RDPKGLYK 223 (269)
Q Consensus 216 R~~k~l~~ 223 (269)
.....+..
T Consensus 164 ~g~a~l~~ 171 (209)
T COG4133 164 EGVALLTA 171 (209)
T ss_pred HHHHHHHH
Confidence 87766543
No 340
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.30 E-value=1.1e-11 Score=110.46 Aligned_cols=142 Identities=19% Similarity=0.188 Sum_probs=89.4
Q ss_pred ceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE-----------ECCeecCcc---c
Q 024315 81 NILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHG---L 145 (269)
Q Consensus 81 ~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~-----------l~g~~~~~~---l 145 (269)
++.+.+... ...++.+ .+.+|++++|+|+||||||||+++|++.+ .+.+|.|. ++|.++... .
T Consensus 5 ~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 5 EPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred CcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 444555433 3567778 48999999999999999999999999988 46688885 677665321 0
Q ss_pred cc---CCCCChhh-----------HHHHH---HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 146 NR---DLSFKAED-----------RVENI---RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 146 ~~---~~g~~~~~-----------~~~~~---~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
.. .+++..+. ....+ ..-......+...++.. .+...++++++| ..++.++.++++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i-- 160 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF-- 160 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE--
Confidence 00 11111110 00000 00012233344444422 223345565655 689999999998
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|+|+..++....+.+++.++
T Consensus 161 lllDEPts~LD~~~~~~l~~~l~ 183 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAARLIR 183 (255)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999988777665544
No 341
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=119.92 Aligned_cols=132 Identities=18% Similarity=0.247 Sum_probs=90.9
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhH---------
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDR--------- 156 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~--------- 156 (269)
..+++++.+.+|++++|+|+||||||||++.|++.+ ++.+|.|.++|.++... .+..++|.+|+.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 458889999999999999999999999999999988 46689999999765321 112222222221
Q ss_pred --HHHHH-----------------H-HHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 157 --VENIR-----------------R-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 157 --~~~~~-----------------~-l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
.+.+. . .......+...++. ..+..+|+++++| ..++.++.++++ +++|||+
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~l--llLDEPt 424 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKV--ILLDEPT 424 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCE--EEEcCCC
Confidence 01100 0 01122333444441 1244557777777 688999999999 9999999
Q ss_pred hHHHhcChhhHHHHH
Q 024315 211 QVCEARDPKGLYKLA 225 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~ 225 (269)
..++....+.+.+.+
T Consensus 425 ~~LD~~~~~~l~~~l 439 (501)
T PRK11288 425 RGIDVGAKHEIYNVI 439 (501)
T ss_pred CCCCHhHHHHHHHHH
Confidence 999999988876554
No 342
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.1e-11 Score=119.24 Aligned_cols=144 Identities=18% Similarity=0.093 Sum_probs=94.2
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC----C--CCChh
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----L--SFKAE 154 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~----~--g~~~~ 154 (269)
++++.+......+++++.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.+++..-..-+... + .++..
T Consensus 324 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~ 402 (530)
T PRK15064 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGTVKWSENANIGYYAQDHAYDFENDLTLF 402 (530)
T ss_pred eeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEEEcccccccCCCCCcHH
Confidence 4454444444567789999999999999999999999999999987 466899998874211001110 0 11222
Q ss_pred hHHHHHH----HHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 155 DRVENIR----RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 155 ~~~~~~~----~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
+...... .-..+...+...++. ..+...|+++++| ..+++++.++++ +++|||+..++....+.+.+.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l--llLDEPt~~LD~~~~~~l~~~ 480 (530)
T PRK15064 403 DWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV--LVMDEPTNHMDMESIESLNMA 480 (530)
T ss_pred HHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHHHHH
Confidence 1111000 001122333344431 1244456777777 688999999999 999999999999988888777
Q ss_pred Hhc
Q 024315 225 ARE 227 (269)
Q Consensus 225 ~r~ 227 (269)
++.
T Consensus 481 l~~ 483 (530)
T PRK15064 481 LEK 483 (530)
T ss_pred HHH
Confidence 664
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.29 E-value=1.4e-11 Score=122.97 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=93.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-cccC---C--CCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRD---L--SFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-l~~~---~--g~~~ 153 (269)
.++++.+......+.+++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++ .++.-+ +... + ..+.
T Consensus 323 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~-~~~~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 323 ENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHCG-TKLEVAYFDQHRAELDPEKTV 400 (635)
T ss_pred eeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEC-CCcEEEEEeCcccccCCCCCH
Confidence 45555555555678889999999999999999999999999999987 4668888884 332100 0000 0 0111
Q ss_pred hhHHHHH------H-HHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315 154 EDRVENI------R-RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 154 ~~~~~~~------~-~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
.+..... . ....+...+...++. ..+..+|+++++| ..++.++.++++ +++|+|+..++......
T Consensus 401 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l--LlLDEPt~~LD~~~~~~ 478 (635)
T PRK11147 401 MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL--LILDEPTNDLDVETLEL 478 (635)
T ss_pred HHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHH
Confidence 1110000 0 001122233333332 1234457777777 688999999999 99999999999998888
Q ss_pred HHHHHhc
Q 024315 221 LYKLARE 227 (269)
Q Consensus 221 l~~~~r~ 227 (269)
+.+.+++
T Consensus 479 l~~~l~~ 485 (635)
T PRK11147 479 LEELLDS 485 (635)
T ss_pred HHHHHHh
Confidence 8777765
No 344
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.28 E-value=2.9e-11 Score=117.04 Aligned_cols=134 Identities=20% Similarity=0.175 Sum_probs=88.2
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCC--CCChhhHHHHH-------
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--SFKAEDRVENI------- 160 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~--g~~~~~~~~~~------- 160 (269)
...+.++|.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.+........+ .++..+.....
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 3567889999999999999999999999999999988 4668999999865321100000 01111111000
Q ss_pred -HHH-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 161 -RRI-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 161 -~~l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
... .....++...++.. .+..+++++++| ..+++++.++++ +++|+|+..++....+.+.+.++
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L--LLLDEPTsgLD~~sr~~LlelL~ 187 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI--LVIDEALSVGDQTFTKKCLDKMN 187 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE--EEEECCcccCCHHHHHHHHHHHH
Confidence 000 01112233333321 234456677776 689999999999 99999999999988777766654
No 345
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.28 E-value=1.9e-11 Score=122.48 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=88.9
Q ss_pred ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315 81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (269)
Q Consensus 81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~ 159 (269)
++++.+. .....++.++.+++|++++|+|+||||||||++.|+|.+ ++.+|.+.+++.....-+..+..+......++
T Consensus 456 nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~en 534 (659)
T TIGR00954 456 NIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQ 534 (659)
T ss_pred eeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecCCCcEEEECCCCCCCCcCHHHH
Confidence 4444432 223566789999999999999999999999999999987 45678887764211000000000000000011
Q ss_pred HHH-------------HHHHHHHHHhCCcce-------------eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 160 IRR-------------IGEVAKLFADAGVIC-------------IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 160 ~~~-------------l~~~a~~~~~~g~~~-------------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
+.. -.++...+...++.. .....++++++| ..+|+++.++++ +++|||+..
T Consensus 535 i~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i--llLDEpts~ 612 (659)
T TIGR00954 535 IIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF--AILDECTSA 612 (659)
T ss_pred HhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE--EEEeCCccC
Confidence 000 001111222222211 123456777777 799999999999 999999999
Q ss_pred HHhcChhhHHHHHhc
Q 024315 213 CEARDPKGLYKLARE 227 (269)
Q Consensus 213 l~~R~~k~l~~~~r~ 227 (269)
++....+.+++.+++
T Consensus 613 LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 613 VSVDVEGYMYRLCRE 627 (659)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999998888877665
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.28 E-value=2.6e-11 Score=121.12 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=95.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~ 154 (269)
.++++.++.....++++|.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.+++..... ......++..+
T Consensus 7 ~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~ 85 (635)
T PRK11147 7 HGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRIIYEQDLIVARLQQDPPRNVEGTVYD 85 (635)
T ss_pred eeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEeCCCCEEEEeccCCCCCCCCCHHH
Confidence 45666666666788999999999999999999999999999999987 4668999988742110 00111111111
Q ss_pred hHH--------------------------HHHHHH----------------HHHHHHHHhCCcc--eeeccCChHHHHH-
Q 024315 155 DRV--------------------------ENIRRI----------------GEVAKLFADAGVI--CIACLISPYRKDR- 189 (269)
Q Consensus 155 ~~~--------------------------~~~~~l----------------~~~a~~~~~~g~~--~iv~~~~~~~~~r- 189 (269)
... +.+... .++..++...++. ..+...|+++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv 165 (635)
T PRK11147 86 FVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKA 165 (635)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHH
Confidence 100 000000 0112223333331 1233456667766
Q ss_pred HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 190 ~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
..++.++.++++ +++|+|+..++......+.+.++.
T Consensus 166 ~LAraL~~~P~l--LLLDEPt~~LD~~~~~~L~~~L~~ 201 (635)
T PRK11147 166 ALGRALVSNPDV--LLLDEPTNHLDIETIEWLEGFLKT 201 (635)
T ss_pred HHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHh
Confidence 689999999999 999999999999888877776654
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.28 E-value=4.7e-11 Score=97.65 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=98.3
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecCc--ccccCCCCChhh-
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRH--GLNRDLSFKAED- 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~~--~l~~~~g~~~~~- 155 (269)
|++..-+.-......++++.+|+++-|+||||||||||+..+.+.|... -.|.+++++..+.. .-.+.+|+-.|+
T Consensus 7 nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~ 86 (213)
T COG4136 7 NVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDA 86 (213)
T ss_pred eeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccc
Confidence 3444444444556678999999999999999999999999999998532 26899999887642 001111111110
Q ss_pred --------------------HHHHHHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 156 --------------------RVENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 156 --------------------~~~~~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
.-+.+++... ..+...|+.. ..+..+++++.| ...|.++.++++ +++|+|+
T Consensus 87 lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~--aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~--lLLDEPF 162 (213)
T COG4136 87 LLFPHLSVGQNLLFALPATLKGNARRNAAN--AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA--LLLDEPF 162 (213)
T ss_pred ccccccccccceEEecCcccccHHHHhhHH--HHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce--eeeCCch
Confidence 0011111111 1122223321 234456666666 578899999999 9999999
Q ss_pred hHHHhcChhh----HHHHHhcCccccccccccccCCC
Q 024315 211 QVCEARDPKG----LYKLAREGKVKGFTGIDDPYEPP 243 (269)
Q Consensus 211 ~~l~~R~~k~----l~~~~r~g~~~~~~~i~~~~e~p 243 (269)
+.++...+.. .+...|...+..+.--.+.-+.|
T Consensus 163 S~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 163 SRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999877766 34556666665544333444444
No 348
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.27 E-value=3.6e-11 Score=118.15 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=93.1
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCcccccCC----CCCh
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL----SFKA 153 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~~l~~~~----g~~~ 153 (269)
.|+++.+. .....+++++.+.+|++++|+|+||||||||+++|+|.+. +.+|.|.+++.. +.. +.... .++.
T Consensus 8 ~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~-v~Q~~~~~~~~tv 85 (552)
T TIGR03719 8 NRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFNGEARPAPGIKVGY-LPQEPQLDPTKTV 85 (552)
T ss_pred eeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEE-EeccCCCCCCCcH
Confidence 45666664 4557788999999999999999999999999999999874 568888886521 110 00000 1111
Q ss_pred hhHHHH-HH-------------------------------HH-------------HHHHHHHHhCCcc---eeeccCChH
Q 024315 154 EDRVEN-IR-------------------------------RI-------------GEVAKLFADAGVI---CIACLISPY 185 (269)
Q Consensus 154 ~~~~~~-~~-------------------------------~l-------------~~~a~~~~~~g~~---~iv~~~~~~ 185 (269)
.+.... .. .+ ..+...+...++. ..+...|++
T Consensus 86 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG 165 (552)
T TIGR03719 86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGG 165 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHH
Confidence 111000 00 00 0011122222221 123345667
Q ss_pred HHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 186 RKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 186 ~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++| ..++.++.++++ +++|||+..++....+.+.+.+++
T Consensus 166 qkqrv~la~al~~~p~l--LLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 166 ERRRVALCRLLLSKPDM--LLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred HHHHHHHHHHHhcCCCE--EEEcCCCCCCChHHHHHHHHHHHh
Confidence 7777 688999999999 999999999999998888877664
No 349
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.26 E-value=3.9e-11 Score=106.33 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=93.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHH-HHHHHHHHHhCCcceeeccC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR-IGEVAKLFADAGVICIACLI 182 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~-l~~~a~~~~~~g~~~iv~~~ 182 (269)
+|.|+|++||||||+++.|++.+...+...+.++.|.++..+.. +.. ......+. ...........+..++++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~---~~~-~~e~~~~~~~~~~i~~~l~~~~~VI~D~~ 76 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV---WKE-KYEEFIRDSTLYLIKTALKNKYSVIVDDT 76 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH---hhH-HhHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 47899999999999999999988655556778887776532210 111 11111111 11222223344566676666
Q ss_pred ChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccc--cccccccccCCCC------CCCeEEEc
Q 024315 183 SPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK--GFTGIDDPYEPPL------NCEVGVHV 252 (269)
Q Consensus 183 ~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~--~~~~i~~~~e~p~------~~e~~id~ 252 (269)
...+..|..+..++.. ..+..+|+++|.+.|.+|..++ ...+. .+..+...||+|. .+.++||+
T Consensus 77 ~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R------~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~ 150 (249)
T TIGR03574 77 NYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER------GEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDT 150 (249)
T ss_pred chHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC------CCCCCHHHHHHHHHhhCCCCCCCCccCceEEecC
Confidence 5555555544444432 3456689999999999987432 22221 1334445677664 57899999
Q ss_pred CCCcCHHHHHH-HHhh
Q 024315 253 WYRFELAETWR-ITKW 267 (269)
Q Consensus 253 ~~~~~~~~~~~-i~~~ 267 (269)
+.+.+.++++. |.+.
T Consensus 151 ~~~~~~~ei~~~i~~~ 166 (249)
T TIGR03574 151 TKKIDYNEILEEILEI 166 (249)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 76677777776 6554
No 350
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.26 E-value=1.4e-11 Score=133.01 Aligned_cols=133 Identities=19% Similarity=0.215 Sum_probs=93.2
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..+++++++++|+.++|+|+||||||||+++|.|++. .+|.|++||.++.. .++..+++.+|+- +++
T Consensus 1234 vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 3466789999999999999999999999999999884 58999999998863 3444444444421 122
Q ss_pred HHHH-----HHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 160 IRRI-----GEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 160 ~~~l-----~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
+... .++-..+... |+... ....+++++|| ..+|+++.++++ +.+|||++.+|....
T Consensus 1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I--LlLDEaTS~lD~~Te 1389 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI--LLLDEPSAHLDPVTL 1389 (1490)
T ss_pred hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE--EEEeCCcccCCHHHH
Confidence 1100 0111111111 22222 22356777777 699999999999 999999999999888
Q ss_pred hhHHHHHhc
Q 024315 219 KGLYKLARE 227 (269)
Q Consensus 219 k~l~~~~r~ 227 (269)
+.+.+.++.
T Consensus 1390 ~~I~~~L~~ 1398 (1490)
T TIGR01271 1390 QIIRKTLKQ 1398 (1490)
T ss_pred HHHHHHHHH
Confidence 887777664
No 351
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.6e-11 Score=112.94 Aligned_cols=132 Identities=22% Similarity=0.281 Sum_probs=96.9
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH-------HHH
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV-------ENI 160 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~-------~~~ 160 (269)
...++++++.|+.++++|+||+||||+++.|-+.+ +..+|.|.+||.+++. .+++.+|..+|+.. .++
T Consensus 279 L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni 357 (497)
T COG5265 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNI 357 (497)
T ss_pred hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHH
Confidence 35668999999999999999999999999999988 6779999999999873 56666777776431 111
Q ss_pred H------------H---HHHHHHHHH------hCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 161 R------------R---IGEVAKLFA------DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 161 ~------------~---l~~~a~~~~------~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
+ . ..++...++ +.++-...-..+++++|| .++|.++++|++ +++||.+..++.+..
T Consensus 358 ~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~i--l~~deatsaldt~te 435 (497)
T COG5265 358 KYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI--LILDEATSALDTHTE 435 (497)
T ss_pred hccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCE--EEEehhhhHhhhhHH
Confidence 1 0 011111111 122223344557777777 699999999999 999999999999998
Q ss_pred hhHHHHHh
Q 024315 219 KGLYKLAR 226 (269)
Q Consensus 219 k~l~~~~r 226 (269)
+.+...++
T Consensus 436 ~~iq~~l~ 443 (497)
T COG5265 436 QAIQAALR 443 (497)
T ss_pred HHHHHHHH
Confidence 88765544
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.25 E-value=2.3e-11 Score=120.44 Aligned_cols=144 Identities=21% Similarity=0.220 Sum_probs=95.1
Q ss_pred cceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE-----------ECCeecCcc---
Q 024315 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHG--- 144 (269)
Q Consensus 80 ~~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~-----------l~g~~~~~~--- 144 (269)
.++...++.. .+..+.+ .+++|++++|+|+||||||||+++|+|.+. |..|.|. ++|.++...
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 4466666543 3678888 899999999999999999999999999884 6688886 777665320
Q ss_pred c---ccCCC----CChhh-------HHHHHHH---HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 145 L---NRDLS----FKAED-------RVENIRR---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 145 l---~~~~g----~~~~~-------~~~~~~~---l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+ ...++ +..+. ..+.+.. ...+..++...++.. .+..+++++++| .++++++.++++
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l- 233 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF- 233 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 0 01111 11110 0111110 112233344444432 234456777776 688999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHhc
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++......+.+.++.
T Consensus 234 -llLDEPts~LD~~~~~~l~~~i~~ 257 (590)
T PRK13409 234 -YFFDEPTSYLDIRQRLNVARLIRE 257 (590)
T ss_pred -EEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999988887765553
No 353
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.25 E-value=4.3e-11 Score=115.56 Aligned_cols=136 Identities=24% Similarity=0.272 Sum_probs=95.2
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC---ccEEEECCeecCc-------ccc-cCCCCChhhHH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRH-------GLN-RDLSFKAEDRV 157 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~---~g~i~l~g~~~~~-------~l~-~~~g~~~~~~~ 157 (269)
+.+.+++||.+.+||+++|+|.|||||||++++|.+.++..+ +|.|.++|.++.. .++ +.+++..|+-.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 567899999999999999999999999999999999997553 7999999986542 111 12222222210
Q ss_pred --------------HHHH---------HHHHHHHHHHhCCcce------eeccCChHHHHHH-HHHHhCCCCCccEEEEe
Q 024315 158 --------------ENIR---------RIGEVAKLFADAGVIC------IACLISPYRKDRD-ACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 158 --------------~~~~---------~l~~~a~~~~~~g~~~------iv~~~~~~~~~r~-~ar~ll~~~~~~~i~ld 207 (269)
+.+. ...+...++...++-. +.-.+|++++||. ++++++.+|++ +..|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~L--LIaD 179 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL--LIAD 179 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCE--EEEC
Confidence 1100 1112233444444422 3334577888885 89999999998 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
||+-.++...++.+.+.++
T Consensus 180 EPTTaLDvt~q~qIL~llk 198 (539)
T COG1123 180 EPTTALDVTTQAQILDLLK 198 (539)
T ss_pred CCccccCHHHHHHHHHHHH
Confidence 9999999988888665555
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.25 E-value=3e-11 Score=129.61 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=92.5
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecCcccccCCCCChhhH--------HHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGLNRDLSFKAEDR--------VEN 159 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~~~l~~~~g~~~~~~--------~~~ 159 (269)
...+++++.+++|++++|+|+||||||||+++|++++.. +.+|.|.++|.++...+++.++|.+|+. ++.
T Consensus 777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~ 856 (1394)
T TIGR00956 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRES 856 (1394)
T ss_pred EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHH
Confidence 356778999999999999999999999999999998742 4569999999887544444445444321 111
Q ss_pred HHH---------------HHHHHHHHHhCCcce----eec----cCChHHHHH-HHHHHhCCCCC-ccEEEEeCChhHHH
Q 024315 160 IRR---------------IGEVAKLFADAGVIC----IAC----LISPYRKDR-DACRSMLPEGD-FIEVFMDVPLQVCE 214 (269)
Q Consensus 160 ~~~---------------l~~~a~~~~~~g~~~----iv~----~~~~~~~~r-~~ar~ll~~~~-~~~i~ld~p~~~l~ 214 (269)
+.. ...+..++...++.. .+. ..++++++| .++++++.+++ + +++|||+..+|
T Consensus 857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~i--LlLDEPTsgLD 934 (1394)
T TIGR00956 857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLL--LFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeE--EEEcCCCCCCC
Confidence 110 011223333334422 121 356666666 69999999996 7 89999999999
Q ss_pred hcChhhHHHHHh
Q 024315 215 ARDPKGLYKLAR 226 (269)
Q Consensus 215 ~R~~k~l~~~~r 226 (269)
......+.+.++
T Consensus 935 ~~~~~~i~~~L~ 946 (1394)
T TIGR00956 935 SQTAWSICKLMR 946 (1394)
T ss_pred HHHHHHHHHHHH
Confidence 988777554443
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=5.2e-11 Score=104.11 Aligned_cols=134 Identities=19% Similarity=0.082 Sum_probs=87.7
Q ss_pred eCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCCh------------
Q 024315 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA------------ 153 (269)
Q Consensus 86 ~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~------------ 153 (269)
...+.+.++++|++.+|+.++|+|.||||||||++.|++.+ +|.+|.+.++|+-.. .+.-..||.+
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt~G~v~v~G~v~~-li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPTSGKVKVTGKVAP-LIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCCCceEEEcceEeh-hhhcccCCCcccchHHHHHHHH
Confidence 34677889999999999999999999999999999999999 577999999997542 1111223333
Q ss_pred -------hhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 154 -------EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 154 -------~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
++..+....+.+.+.+ .++--..+-..++++..+....-+...++++ +++|+=+++-++.-.+...++
T Consensus 115 ~~~G~~~~ei~~~~~eIieFaEL-G~fi~~PvktYSSGM~aRLaFsia~~~~pdI--LllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIEFAEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDI--LLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHhCccHHHHHHHHHHHHHHHHH-HHHhhCchhhccHHHHHHHHHhhhhhcCCCE--EEEehhhhcCCHHHHHHHHHH
Confidence 2222222222222211 1111123344556665555555555566777 899999998888776664433
No 356
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.23 E-value=7.1e-11 Score=116.11 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=93.8
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cC---cccc-cCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CR---HGLN-RDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~---~~l~-~~~g~~~~ 154 (269)
.++++.+......+++++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.+++.. +. .... -...++..
T Consensus 326 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~ 404 (552)
T TIGR03719 326 ENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGTIKIGETVKLAYVDQSRDALDPNKTVW 404 (552)
T ss_pred eeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEECCceEEEEEeCCccccCCCCcHH
Confidence 34555554445667889999999999999999999999999999987 4668888885431 11 0000 00011111
Q ss_pred hHHHHHH-------HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315 155 DRVENIR-------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (269)
Q Consensus 155 ~~~~~~~-------~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l 221 (269)
+...... ........+...++.. .+...|+++++| ..++.++.++++ +++|||+..++....+.+
T Consensus 405 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l--llLDEPt~~LD~~~~~~l 482 (552)
T TIGR03719 405 EEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV--LLLDEPTNDLDVETLRAL 482 (552)
T ss_pred HHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHHHHHH
Confidence 1110000 0001112333444421 234556777776 689999999999 999999999999998888
Q ss_pred HHHHhc
Q 024315 222 YKLARE 227 (269)
Q Consensus 222 ~~~~r~ 227 (269)
.+.+++
T Consensus 483 ~~~l~~ 488 (552)
T TIGR03719 483 EEALLE 488 (552)
T ss_pred HHHHHH
Confidence 877765
No 357
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=5.1e-11 Score=119.02 Aligned_cols=144 Identities=16% Similarity=0.090 Sum_probs=94.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe-ecCcccccC--CCCChh-h
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRD--LSFKAE-D 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~-~~~~~l~~~--~g~~~~-~ 155 (269)
.++++.+......+++++.+.+|++++|+||||||||||+++|+|.+ .+.+|.|.+++. .+.. +... ..+... .
T Consensus 316 ~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~~~igy-~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 316 EKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKGIKLGY-FAQHQLEFLRADES 393 (638)
T ss_pred EeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCCEEEEE-ecCcchhhCCccch
Confidence 35555555555678899999999999999999999999999999988 466889888642 2211 0000 001110 0
Q ss_pred HHHHHHH------HHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315 156 RVENIRR------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (269)
Q Consensus 156 ~~~~~~~------l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~ 223 (269)
....+.. ...+...+...++. ..+..+|+++++| ..++.++.++++ +++|+|+..++......+.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l--LlLDEPt~~LD~~~~~~l~~ 471 (638)
T PRK10636 394 PLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL--LLLDEPTNHLDLDMRQALTE 471 (638)
T ss_pred HHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHHHH
Confidence 0111110 01122333444442 1244557777777 688999999999 99999999999998888877
Q ss_pred HHhc
Q 024315 224 LARE 227 (269)
Q Consensus 224 ~~r~ 227 (269)
.+++
T Consensus 472 ~L~~ 475 (638)
T PRK10636 472 ALID 475 (638)
T ss_pred HHHH
Confidence 7664
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.23 E-value=6.2e-11 Score=115.48 Aligned_cols=143 Identities=18% Similarity=0.132 Sum_probs=94.0
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChh-----
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE----- 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~----- 154 (269)
.++++.++.....+++++.+.+|+.++|+|+||+|||||+++|+|.+ .+..|.|...+.....-+..+....+.
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~ 85 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLD 85 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCeEeecCCceEEEeCCCCCcCCCccHHH
Confidence 46777777888889999999999999999999999999999999998 466888887764211111111111110
Q ss_pred -------hHHHHHH---HH----------------------------HHHHHHHHhCCcce---eeccCChHHHHH-HHH
Q 024315 155 -------DRVENIR---RI----------------------------GEVAKLFADAGVIC---IACLISPYRKDR-DAC 192 (269)
Q Consensus 155 -------~~~~~~~---~l----------------------------~~~a~~~~~~g~~~---iv~~~~~~~~~r-~~a 192 (269)
+..+..+ .+ .++..++...|... -+..++++.+.| ..+
T Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA 165 (530)
T COG0488 86 YVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALA 165 (530)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHH
Confidence 0000000 00 12223333444432 234456777777 689
Q ss_pred HHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 193 r~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
+.++.+|++ +++|||++.|+-....=|...+
T Consensus 166 ~aL~~~pDl--LLLDEPTNHLD~~~i~WLe~~L 196 (530)
T COG0488 166 RALLEEPDL--LLLDEPTNHLDLESIEWLEDYL 196 (530)
T ss_pred HHHhcCCCE--EEEcCCCcccCHHHHHHHHHHH
Confidence 999999999 9999999999876655444444
No 359
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.23 E-value=3.3e-11 Score=131.73 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=100.1
Q ss_pred cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChh
Q 024315 80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~ 154 (269)
.++...+.. ..+.+++++.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. ..++.+||.+|
T Consensus 1941 ~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ 2019 (2272)
T TIGR01257 1941 NELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSGDATVAGKSILTNISDVHQNMGYCPQ 2019 (2272)
T ss_pred EEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECcchHHHHhhhEEEEec
Confidence 355555543 55778899999999999999999999999999999988 4678999999988742 12233444433
Q ss_pred h-----------HHHHHHHH--------HH-HHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 155 D-----------RVENIRRI--------GE-VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 155 ~-----------~~~~~~~l--------~~-~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
. ......++ .+ +...+...++.. .+...++++++| ..+++++.++++ +++|||
T Consensus 2020 ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V--LLLDEP 2097 (2272)
T TIGR01257 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL--VLLDEP 2097 (2272)
T ss_pred cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECC
Confidence 2 11111111 11 112344445432 234456666666 699999999999 999999
Q ss_pred hhHHHhcChhhHHHHHh
Q 024315 210 LQVCEARDPKGLYKLAR 226 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r 226 (269)
+..++...++.+.+.++
T Consensus 2098 TsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257 2098 TTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999888665543
No 360
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.23 E-value=5.1e-11 Score=107.80 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=80.9
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c--cccc-----CCCCCh---hhH-
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H--GLNR-----DLSFKA---EDR- 156 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~--~l~~-----~~g~~~---~~~- 156 (269)
...+.+++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.-.. . .+.. .+.+.. +..
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~ 129 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRY 129 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHH
Confidence 3567889999999999999999999999999999988 466889988873110 0 0000 000100 000
Q ss_pred HHHHHHHHHHHHHHHhCC--cc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315 157 VENIRRIGEVAKLFADAG--VI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (269)
Q Consensus 157 ~~~~~~l~~~a~~~~~~g--~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~ 223 (269)
....... .+...+.... .. ......++++++| ..+++++.++++ +++|+|+..++....+.+++
T Consensus 130 ~~~l~~~-~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i--LiLDEPt~gLD~~~~~~l~~ 200 (282)
T cd03291 130 KSVVKAC-QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVFTEKEIFE 200 (282)
T ss_pred HHHHHHh-CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCHHHHHHHHH
Confidence 0000000 0001111100 00 0123456666666 688999999999 99999999999888776654
No 361
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.23 E-value=8.1e-11 Score=115.80 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=94.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cC---ccc-ccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CR---HGL-NRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~---~~l-~~~~g~~~~ 154 (269)
.++.+.+......+++++.+.+|++++|+|+||||||||++.|++.+ .+.+|.|.+++.. +. ... .-...++..
T Consensus 328 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~ 406 (556)
T PRK11819 328 ENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSGTIKIGETVKLAYVDQSRDALDPNKTVW 406 (556)
T ss_pred EeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEEEeCchhhcCCCCCHH
Confidence 34555555555678889999999999999999999999999999987 4668898885431 11 000 000011111
Q ss_pred hHHHHHH-------HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315 155 DRVENIR-------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (269)
Q Consensus 155 ~~~~~~~-------~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l 221 (269)
+...... ........+...++.. .+...|+++++| ..+++++.++++ +++|||+..++....+.+
T Consensus 407 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~~LD~~~~~~l 484 (556)
T PRK11819 407 EEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV--LLLDEPTNDLDVETLRAL 484 (556)
T ss_pred HHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHH
Confidence 1110000 0001112333444421 234557777777 688999999999 999999999999998888
Q ss_pred HHHHhc
Q 024315 222 YKLARE 227 (269)
Q Consensus 222 ~~~~r~ 227 (269)
++.++.
T Consensus 485 ~~~l~~ 490 (556)
T PRK11819 485 EEALLE 490 (556)
T ss_pred HHHHHh
Confidence 877765
No 362
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.22 E-value=4.1e-11 Score=119.95 Aligned_cols=144 Identities=21% Similarity=0.262 Sum_probs=96.2
Q ss_pred cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----cc----cc
Q 024315 80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GL----NR 147 (269)
Q Consensus 80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l----~~ 147 (269)
.++++.+. .....+.+++++++|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++.. .+ +.
T Consensus 8 ~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 86 (648)
T PRK10535 8 KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTYRVAGQDVATLDADALAQLRRE 86 (648)
T ss_pred eeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence 34555542 144678889999999999999999999999999999988 4678999999988652 00 12
Q ss_pred CCCCChhhH--------HHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 148 DLSFKAEDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 148 ~~g~~~~~~--------~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
.++|.+++. .+++. ...+....+...++.. .....++++++| ..+++++.++++
T Consensus 87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~l- 165 (648)
T PRK10535 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQV- 165 (648)
T ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence 222222211 11110 0011222333334322 223346666666 699999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHh
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+.+.++
T Consensus 166 -LllDEP~~gLD~~s~~~l~~ll~ 188 (648)
T PRK10535 166 -ILADEPTGALDSHSGEEVMAILH 188 (648)
T ss_pred -EEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999888765544
No 363
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.22 E-value=3.6e-11 Score=119.72 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=93.7
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecCc-ccccCCCCChhhH--------
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRH-GLNRDLSFKAEDR-------- 156 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~~-~l~~~~g~~~~~~-------- 156 (269)
.....+++++.+++|++++|+|+||||||||+++|+++..+. .+|.|.++|.++.. .+++..+|.+|+.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 344678889999999999999999999999999999987532 26899999987641 2222233333221
Q ss_pred HHHHH---------------HHHHHHHHHHhCCcce-----ee-----ccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315 157 VENIR---------------RIGEVAKLFADAGVIC-----IA-----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (269)
Q Consensus 157 ~~~~~---------------~l~~~a~~~~~~g~~~-----iv-----~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~ 210 (269)
++++. ....+...+...++.. +. ...++++++| ..+++++.++++ +++|+|+
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v--lllDEPt 194 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL--LFCDEPT 194 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE--EEeeCCC
Confidence 11110 1112333444444421 11 1356666666 699999999999 9999999
Q ss_pred hHHHhcChhhHHHHHhc
Q 024315 211 QVCEARDPKGLYKLARE 227 (269)
Q Consensus 211 ~~l~~R~~k~l~~~~r~ 227 (269)
..+|......+.+.+++
T Consensus 195 sgLD~~~~~~l~~~L~~ 211 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKG 211 (617)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 99999998887655543
No 364
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.22 E-value=3.1e-11 Score=131.88 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=99.7
Q ss_pred cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChh
Q 024315 80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~ 154 (269)
.++...+. ...+.++.++.+.+|++++|+|+||||||||+++|+|.+ .|.+|.+.++|.++... .++.+++.+|
T Consensus 932 ~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ 1010 (2272)
T TIGR01257 932 KNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSGTVLVGGKDIETNLDAVRQSLGMCPQ 1010 (2272)
T ss_pred EeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCceEEEECCEECcchHHHHhhcEEEEec
Confidence 34555542 355678899999999999999999999999999999988 46789999999887531 2233333332
Q ss_pred h-----------HHHHHHHH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 155 D-----------RVENIRRI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 155 ~-----------~~~~~~~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
+ ......++ .++...+...++.. .+...++++++| ..+++++.++++ +++|||
T Consensus 1011 ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV--LLLDEP 1088 (2272)
T TIGR01257 1011 HNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV--VVLDEP 1088 (2272)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECC
Confidence 1 11111110 11233444555532 234456676666 699999999999 999999
Q ss_pred hhHHHhcChhhHHHHHh
Q 024315 210 LQVCEARDPKGLYKLAR 226 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r 226 (269)
+..++...++.+.+.++
T Consensus 1089 TSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257 1089 TSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred CcCCCHHHHHHHHHHHH
Confidence 99999998887665544
No 365
>PRK13409 putative ATPase RIL; Provisional
Probab=99.21 E-value=1.1e-10 Score=115.69 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=89.7
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRV 157 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~ 157 (269)
++++.+..+. .+..++.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.++ ..+. .........+..+..
T Consensus 345 ~ls~~~~~~~-l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 345 DLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred ceEEEECCEE-EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEe-eeEEEecccccCCCCCcHHHHH
Confidence 3444443332 45678899999999999999999999999999988 4667888775 1111 010001111221111
Q ss_pred HHHH-H---HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 158 ENIR-R---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 158 ~~~~-~---l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.... . -......+...++.. .+..+|+++++| ..+++++.++++ +++|||+..++...+..+++.++
T Consensus 422 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l--lLLDEPt~~LD~~~~~~l~~~l~ 497 (590)
T PRK13409 422 RSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL--YLLDEPSAHLDVEQRLAVAKAIR 497 (590)
T ss_pred HHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 1100 0 001122334444422 244567777777 688999999999 99999999999998888776655
No 366
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=4.7e-11 Score=105.87 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=84.1
Q ss_pred CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----c---------cc--CCCC
Q 024315 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L---------NR--DLSF 151 (269)
Q Consensus 87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l---------~~--~~g~ 151 (269)
..+.+..+.||.+++|++++++|+||+||||++|.|.|++. |.+|.+.++|.+-... + +. .|..
T Consensus 35 ~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 35 RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 45668889999999999999999999999999999999985 6689999998653210 0 00 0011
Q ss_pred ChhhHHHHH------------HHHHHHHHHHHhCC-cceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 152 KAEDRVENI------------RRIGEVAKLFADAG-VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 152 ~~~~~~~~~------------~~l~~~a~~~~~~g-~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
...+-.+.. .++.....++.-.+ +..-+..++.++++| +.+.+++..+++ +|+|||+=.++--.
T Consensus 114 p~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V--LfLDEpTvgLDV~a 191 (325)
T COG4586 114 PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV--LFLDEPTVGLDVNA 191 (325)
T ss_pred hhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE--EEecCCccCcchhH
Confidence 111111111 11111111111000 111233456677777 688889999888 99999998887655
Q ss_pred hhhHH
Q 024315 218 PKGLY 222 (269)
Q Consensus 218 ~k~l~ 222 (269)
+.++.
T Consensus 192 q~~ir 196 (325)
T COG4586 192 QANIR 196 (325)
T ss_pred HHHHH
Confidence 44433
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=4.4e-11 Score=99.61 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=93.1
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc------------ccCCCCChhhH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------------NRDLSFKAEDR 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l------------~~~~g~~~~~~ 156 (269)
....++++|++..||.+++-|+||+||||+++.|-+.+. +.+|.|++....-.-++ +.-+||..|-.
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 345688999999999999999999999999999999884 66888888654322111 12234444422
Q ss_pred HHHHHH---H------------------HHHHHHHHhCCcce----e-eccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 157 VENIRR---I------------------GEVAKLFADAGVIC----I-ACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 157 ~~~~~~---l------------------~~~a~~~~~~g~~~----i-v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
+ .+-+ + .+...++...++-. + .+..+++++|| .++|.++.+-++ +++|+|
T Consensus 103 R-viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pI--LLLDEP 179 (235)
T COG4778 103 R-VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPI--LLLDEP 179 (235)
T ss_pred H-hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCce--EEecCC
Confidence 1 0000 0 11222333333321 1 22235566666 699999988777 899999
Q ss_pred hhHHHhcChhhHHHHHhcCcccc
Q 024315 210 LQVCEARDPKGLYKLAREGKVKG 232 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r~g~~~~ 232 (269)
+..++..+++-..+.+++.+..+
T Consensus 180 TasLDa~Nr~vVveli~e~Ka~G 202 (235)
T COG4778 180 TASLDATNRAVVVELIREAKARG 202 (235)
T ss_pred cccccccchHHHHHHHHHHHhcC
Confidence 99999999888777777666555
No 368
>PLN03073 ABC transporter F family; Provisional
Probab=99.16 E-value=3.1e-10 Score=114.58 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=91.4
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cC---cccccCCCCChh
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CR---HGLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~---~~l~~~~g~~~~ 154 (269)
.++.+.+. .....+.++|.+++|++++|+|+||||||||+++|++.+ .+.+|.|.+++.. +. ......+.....
T Consensus 512 ~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~ 590 (718)
T PLN03073 512 SDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGTVFRSAKVRMAVFSQHHVDGLDLSSN 590 (718)
T ss_pred EeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCceEEECCceeEEEEeccccccCCcchh
Confidence 34555442 223467789999999999999999999999999999988 4667888876531 10 000000001100
Q ss_pred hHHHHHHH-----HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315 155 DRVENIRR-----IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (269)
Q Consensus 155 ~~~~~~~~-----l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~ 223 (269)
........ -..+...+...++.. .+..+|+++++| ..++.++.++++ +++|||+..++......+.+
T Consensus 591 ~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l--LLLDEPT~~LD~~s~~~l~~ 668 (718)
T PLN03073 591 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI--LLLDEPSNHLDLDAVEALIQ 668 (718)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHHHH
Confidence 00000000 011223344444431 234557777777 688999999999 99999999999988777766
Q ss_pred HHhc
Q 024315 224 LARE 227 (269)
Q Consensus 224 ~~r~ 227 (269)
.++.
T Consensus 669 ~L~~ 672 (718)
T PLN03073 669 GLVL 672 (718)
T ss_pred HHHH
Confidence 6553
No 369
>PLN03073 ABC transporter F family; Provisional
Probab=99.16 E-value=1.2e-10 Score=117.56 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=90.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh--ccCCccEEEECCeecCc-cc-----------
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRH-GL----------- 145 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l--~~~~~g~i~l~g~~~~~-~l----------- 145 (269)
.++++.++.....+.++|++.+|+.++|+|+||||||||+++|++.. ..+.+|.|.+....+.. ..
T Consensus 181 ~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~ 260 (718)
T PLN03073 181 ENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDI 260 (718)
T ss_pred ceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhH
Confidence 46677776666788999999999999999999999999999999853 12445666543322110 00
Q ss_pred ------ccCCCCChh---------------------hHHHHHHHHHH----------------HHHHHHhCCcc-----e
Q 024315 146 ------NRDLSFKAE---------------------DRVENIRRIGE----------------VAKLFADAGVI-----C 177 (269)
Q Consensus 146 ------~~~~g~~~~---------------------~~~~~~~~l~~----------------~a~~~~~~g~~-----~ 177 (269)
....++..+ .......++.+ ...++...|+. .
T Consensus 261 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~ 340 (718)
T PLN03073 261 ERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK 340 (718)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC
Confidence 000000000 00000111111 11222333331 1
Q ss_pred eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 178 IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 178 iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.+..+++++++| .+++.++.++++ +++|||+..++....+.+.+.++.
T Consensus 341 ~~~~LSgG~k~rv~LA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 341 ATKTFSGGWRMRIALARALFIEPDL--LLLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence 233456666666 688999999999 999999999999988888777665
No 370
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.15 E-value=3.2e-10 Score=105.10 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=85.6
Q ss_pred eEEeeCceeeccC------cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc----------
Q 024315 82 ILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---------- 145 (269)
Q Consensus 82 ~~~~~~~v~~~~r------~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l---------- 145 (269)
++++++.+.+.+. +++++++||++.|+|.|||||||+++.|.|++ .|.+|.|++||.++...-
T Consensus 323 lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred eeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 4555555555544 58999999999999999999999999999977 677999999999886210
Q ss_pred -------ccC----CC-CChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHH
Q 024315 146 -------NRD----LS-FKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (269)
Q Consensus 146 -------~~~----~g-~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l 213 (269)
... -+ -+++....+..++.-....-...+.......+.+.++.....-+++++.++ +.+||=.+.-
T Consensus 402 vFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~I--lv~DEWAADQ 479 (546)
T COG4615 402 VFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDI--LVLDEWAADQ 479 (546)
T ss_pred HhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCe--EEeehhhccC
Confidence 000 01 122222233333221111111222222333344444444788888888888 6777766655
Q ss_pred HhcChhhHHHH
Q 024315 214 EARDPKGLYKL 224 (269)
Q Consensus 214 ~~R~~k~l~~~ 224 (269)
++.-++-+|+.
T Consensus 480 DPaFRR~FY~~ 490 (546)
T COG4615 480 DPAFRREFYQV 490 (546)
T ss_pred ChHHHHHHHHH
Confidence 55555555543
No 371
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.12 E-value=3.6e-10 Score=93.55 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=96.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----------ccccCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------GLNRDL 149 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----------~l~~~~ 149 (269)
.++.+.++.-.+.-+.++....|+++.+.||||+|||||++.|.- |.-+.+|...+.+....- .++.+.
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl-le~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~v 84 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL-LEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNV 84 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH-HhCCCCCeEEecccccccccCccHHHHHHHHHhh
Confidence 356667776667778899999999999999999999999998875 445678888887754321 344555
Q ss_pred CCChhhHH--------HH-H---HH---------HHHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccE
Q 024315 150 SFKAEDRV--------EN-I---RR---------IGEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 150 g~~~~~~~--------~~-~---~~---------l~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
|+..+... ++ + .+ ..+...++....+... ...+++++++| .++|+++-++.+
T Consensus 85 gmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqv-- 162 (242)
T COG4161 85 GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQV-- 162 (242)
T ss_pred hhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcE--
Confidence 55544321 00 0 00 0111223333333222 23446777777 699999999988
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|+|...+++.......+.++
T Consensus 163 llfdeptaaldpeitaqvv~iik 185 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIK 185 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHH
Confidence 89999999999888777655544
No 372
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.11 E-value=2.6e-10 Score=113.37 Aligned_cols=136 Identities=22% Similarity=0.275 Sum_probs=92.2
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecC-cccccCCCCChhhH---------
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCR-HGLNRDLSFKAEDR--------- 156 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~-~~l~~~~g~~~~~~--------- 156 (269)
.+...+++...++|++++|+||||||||||+++|+++... .-+|.|.++|.... +..++..+|..|+-
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 4556778999999999999999999999999999999863 24799999994432 22222223333211
Q ss_pred -----------------HHHHHHHHHHHHHHHhCCcce----ee-----ccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 157 -----------------VENIRRIGEVAKLFADAGVIC----IA-----CLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 157 -----------------~~~~~~l~~~a~~~~~~g~~~----iv-----~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
.+... .+..+....|+.. ++ .-.+++++.| ..+.+++.+|.+ +++|||
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~---~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i--LflDEP 197 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRE---RVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI--LFLDEP 197 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHH---HHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCE--EEecCC
Confidence 11111 2233334444421 12 1245666666 699999999988 999999
Q ss_pred hhHHHhcChhh----HHHHHhcCc
Q 024315 210 LQVCEARDPKG----LYKLAREGK 229 (269)
Q Consensus 210 ~~~l~~R~~k~----l~~~~r~g~ 229 (269)
+..||...... +.+.+++|+
T Consensus 198 TSGLDS~sA~~vv~~Lk~lA~~gr 221 (613)
T KOG0061|consen 198 TSGLDSFSALQVVQLLKRLARSGR 221 (613)
T ss_pred CCCcchhhHHHHHHHHHHHHhCCC
Confidence 99999988755 445566665
No 373
>PLN03140 ABC transporter G family member; Provisional
Probab=99.09 E-value=1.9e-10 Score=123.73 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=87.6
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCc-ccccCCCCChhhH--------HHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRH-GLNRDLSFKAEDR--------VENI 160 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~-~l~~~~g~~~~~~--------~~~~ 160 (269)
..+++++.+++|++++|+|+||||||||++.|+++... ..+|.+.++|.+... ..++..+|..|+. .+.+
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 34567899999999999999999999999999998632 236899999976532 1122223333221 1111
Q ss_pred H---------------HHHHHHHHHHhCCcce----ee-----ccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 161 R---------------RIGEVAKLFADAGVIC----IA-----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 161 ~---------------~l~~~a~~~~~~g~~~----iv-----~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
. ....+..++...++.. .+ ..+++++++| .++++++.++++ +++|||+..+|.
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~l--L~LDEPTsgLD~ 1052 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI--IFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCH
Confidence 0 0011222333334321 11 3456777777 699999999999 999999999999
Q ss_pred cChhhHHHHH
Q 024315 216 RDPKGLYKLA 225 (269)
Q Consensus 216 R~~k~l~~~~ 225 (269)
+....+.+.+
T Consensus 1053 ~~a~~v~~~L 1062 (1470)
T PLN03140 1053 RAAAIVMRTV 1062 (1470)
T ss_pred HHHHHHHHHH
Confidence 8887755443
No 374
>COG0645 Predicted kinase [General function prediction only]
Probab=99.09 E-value=8.2e-10 Score=91.68 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=108.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc-----C---CCCChhhHHHHHHHHHHHHHHHHhC
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----D---LSFKAEDRVENIRRIGEVAKLFADA 173 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~-----~---~g~~~~~~~~~~~~l~~~a~~~~~~ 173 (269)
+.++.+.|.+|+||||+++.|+..+. .+.|..|.+++.|+. . -.|+++.-...+..+...+.+....
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lg-----A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLG-----AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcC-----ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 35778899999999999999999874 578889999887765 2 2266666666777788888999999
Q ss_pred CcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhHHHHHhcCcc-----ccccccccccCCCCC-
Q 024315 174 GVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKV-----KGFTGIDDPYEPPLN- 245 (269)
Q Consensus 174 g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~-----~~~~~i~~~~e~p~~- 245 (269)
|..++.+.....+.+|+.++.++... +|..+.+++|.+++..|. ..|.+.. ..+..+-..++++..
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl------~aR~~d~sDA~~~il~~q~~~~~~~~~~ 149 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRL------AARKGDASDATFDILRVQLAEDEPWTEW 149 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHH------HHhCCCcccchHHHHHHHHhhhCCcccc
Confidence 99999998888888899888888765 677789999999999887 5555522 112222244555443
Q ss_pred CCeEEEcCCCcCHHHHH
Q 024315 246 CEVGVHVWYRFELAETW 262 (269)
Q Consensus 246 ~e~~id~~~~~~~~~~~ 262 (269)
....+++..+.++.+..
T Consensus 150 ~~~~~~~~~~~~~~~l~ 166 (170)
T COG0645 150 ETADTDTARTRDVSQLA 166 (170)
T ss_pred cchhhcccccccHHHHH
Confidence 23444554444444433
No 375
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.08 E-value=4.2e-11 Score=101.69 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=55.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC-eecC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCR 142 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g-~~~~ 142 (269)
.+++..+++|.+....||.+.+|++-+|+||||+||||+...|.++.+ |..|.++++| .+++
T Consensus 9 ~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~ 71 (249)
T COG4674 9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLT 71 (249)
T ss_pred eceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-CCcceEEEcCchhhc
Confidence 567777889999999999999999999999999999999999999884 6689999999 5554
No 376
>PLN03130 ABC transporter C family member; Provisional
Probab=99.08 E-value=4.3e-10 Score=122.26 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=82.8
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCc-cEEEECCeecC---------cccccCCCCChhhHHHHHH
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNCR---------HGLNRDLSFKAEDRVENIR 161 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~-g~i~l~g~~~~---------~~l~~~~g~~~~~~~~~~~ 161 (269)
..+.++.+++|++++|+|++|||||||+++|.|.+. +.+ |.|.+.+.-.. ..++.++.+......+.+.
T Consensus 633 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~ 711 (1622)
T PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-PRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE 711 (1622)
T ss_pred eeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-cCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHH
Confidence 466789999999999999999999999999999995 556 78776553110 0112222221110112222
Q ss_pred HHHHHHH---HHH--hCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315 162 RIGEVAK---LFA--DAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 162 ~l~~~a~---~~~--~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~ 222 (269)
.+.+.+. .+. ..|... -...+++++++| ..||+++.++++ +++|+|++.+|....+.+.
T Consensus 712 ~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I--lLLDEptSALD~~~~~~I~ 780 (1622)
T PLN03130 712 RAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV--YIFDDPLSALDAHVGRQVF 780 (1622)
T ss_pred HHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE--EEECCCccccCHHHHHHHH
Confidence 2222211 111 112222 233467888888 799999999999 8999999999988776654
No 377
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.08 E-value=5.1e-10 Score=96.39 Aligned_cols=131 Identities=19% Similarity=0.210 Sum_probs=84.6
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc-----------ccC--C----CCCh
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----------NRD--L----SFKA 153 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l-----------~~~--~----g~~~ 153 (269)
+....++++.+|+++.++|.||||||||+++|+|.+ .+.+|.|+++|.++.+.- ..+ . .++-
T Consensus 21 ~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTi 99 (263)
T COG1101 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI 99 (263)
T ss_pred HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccH
Confidence 446679999999999999999999999999999998 467999999999986310 000 0 0111
Q ss_pred hhHH---------------HHHHHHHHHHHHHHhC--Cc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 154 EDRV---------------ENIRRIGEVAKLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 154 ~~~~---------------~~~~~l~~~a~~~~~~--g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
+|.. .+.++.......+... |+ ..-+...+++++|- ..+.+.+..+++ +++||=++
T Consensus 100 eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pki--LLLDEHTA 177 (263)
T COG1101 100 EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKI--LLLDEHTA 177 (263)
T ss_pred HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcE--EEecchhh
Confidence 1100 0000000111111111 11 11233445655554 688888999998 99999999
Q ss_pred HHHhcChhhHHHH
Q 024315 212 VCEARDPKGLYKL 224 (269)
Q Consensus 212 ~l~~R~~k~l~~~ 224 (269)
.++++..+-+.+.
T Consensus 178 ALDPkta~~vm~l 190 (263)
T COG1101 178 ALDPKTAEFVMEL 190 (263)
T ss_pred cCCcchHHHHHHH
Confidence 9999987765533
No 378
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.08 E-value=2.6e-10 Score=105.12 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=77.3
Q ss_pred EEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--------HHHHHHH------------HH
Q 024315 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED--------RVENIRR------------IG 164 (269)
Q Consensus 107 l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~--------~~~~~~~------------l~ 164 (269)
|+|+||||||||+++|+|.+ .+.+|.|.++|.++.. ..++.++|..++ ..+++.. ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 58999999999999999988 4668999999987642 111222222221 1111110 01
Q ss_pred HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 165 EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 165 ~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.+...+...++.. .....++++++| ..+++++.++++ +++|||+..++...++.+++.++
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--llLDEP~s~LD~~~~~~l~~~l~ 144 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI--LLLDEPLSALDKKLRDQMQLELK 144 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 1223344444432 233456777777 699999999999 99999999999998888776554
No 379
>PLN03232 ABC transporter C family member; Provisional
Probab=99.06 E-value=4.7e-10 Score=121.39 Aligned_cols=131 Identities=19% Similarity=0.270 Sum_probs=81.3
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe-------ecC--cccccCCC----CChhhHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-------NCR--HGLNRDLS----FKAEDRV 157 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~-------~~~--~~l~~~~g----~~~~~~~ 157 (269)
..++.++++++|+.++|+|++|||||||+++|.|.+.+...+.+.+.+. ++- ..++.++. +++++..
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~ 711 (1495)
T PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYW 711 (1495)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHH
Confidence 3566789999999999999999999999999999986432233333321 100 01111121 2222222
Q ss_pred HHHHHHHHHHHHHH--hCCcce-e---eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 158 ENIRRIGEVAKLFA--DAGVIC-I---ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 158 ~~~~~l~~~a~~~~--~~g~~~-i---v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
+.++.. .....+. ..|... + ...+++++++| ..||+++.++++ +++|+|++.+|....+.+.+.
T Consensus 712 ~vl~~~-~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I--lLLDEptSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 712 RAIDVT-ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI--YIFDDPLSALDAHVAHQVFDS 782 (1495)
T ss_pred HHHHHh-CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE--EEEcCCccccCHHHHHHHHHH
Confidence 222211 1111111 112222 2 23457888888 799999999999 899999999998887766543
No 380
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.05 E-value=4.8e-10 Score=120.51 Aligned_cols=137 Identities=16% Similarity=0.130 Sum_probs=92.2
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc---cCCccEEEECCeecCc---ccccCCCCChhhH-----
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRH---GLNRDLSFKAEDR----- 156 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~---~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~----- 156 (269)
.....+++++.+++|++++|+|+||||||||++.|++++. .+.+|.|.++|.++.. ..+..++|..|+.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 3556788999999999999999999999999999999863 3458999999986531 1222233332211
Q ss_pred ---HHHHH-------------------HHHHH-HHHHHhCCccee---------eccCChHHHHH-HHHHHhCCCCCccE
Q 024315 157 ---VENIR-------------------RIGEV-AKLFADAGVICI---------ACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 157 ---~~~~~-------------------~l~~~-a~~~~~~g~~~i---------v~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
.+.+. ....+ ..++...|+... +...++++++| .++++++.++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v-- 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI-- 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE--
Confidence 01100 00011 123344454321 23356677777 699999999998
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..+|......+.+.++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~ 253 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALK 253 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHH
Confidence 99999999999988877655444
No 381
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.04 E-value=1.7e-10 Score=102.76 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=80.7
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---cc-----ccCCCCChhhHH--------H
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GL-----NRDLSFKAEDRV--------E 158 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l-----~~~~g~~~~~~~--------~ 158 (269)
+++.....-+.+|-|+||||||||.++++|++. |..|.|.++|+.+.. ++ .+.+||..|+-+ .
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 455666657999999999999999999999884 679999999987652 11 234555555431 1
Q ss_pred HHHH------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 159 NIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 159 ~~~~------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
++++ ..+...+..-.|+.. ....++++++|| .+.|+++.+|++ ++||||++.++..-.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~L--LLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPEL--LLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCe--eeecCchhhcccchh
Confidence 1100 011111222223221 233457778888 689999999999 999999999986443
No 382
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.03 E-value=5.5e-10 Score=121.03 Aligned_cols=132 Identities=18% Similarity=0.252 Sum_probs=85.8
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec--Cc-------ccccCCCCChhhHHHHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH-------GLNRDLSFKAEDRVENIR 161 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~--~~-------~l~~~~g~~~~~~~~~~~ 161 (269)
..++.++.+++|++++|+|+||||||||+++|.|.++ +.+|.+.++|.-- .. .++.++.+......+.+.
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 731 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQ 731 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-cCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHH
Confidence 4567799999999999999999999999999999884 6688999887311 00 011111111000011122
Q ss_pred HHHHHH---HHHH--hCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315 162 RIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 162 ~l~~~a---~~~~--~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
.+.+.. ..+. ..|.. ......++++++| ..+|+++.++++ +++|+|+..+|....+.+.+..
T Consensus 732 ~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i--llLDEp~saLD~~~~~~i~~~l 803 (1522)
T TIGR00957 732 QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSAVDAHVGKHIFEHV 803 (1522)
T ss_pred HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCccccCHHHHHHHHHHH
Confidence 211111 1111 11221 1233457777777 699999999999 9999999999998888776554
No 383
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.03 E-value=2.6e-09 Score=99.48 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=94.0
Q ss_pred CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC----ccEEEECCeecCc-------cccc-CCCCChh
Q 024315 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG----KLTYILDGDNCRH-------GLNR-DLSFKAE 154 (269)
Q Consensus 87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~----~g~i~l~g~~~~~-------~l~~-~~g~~~~ 154 (269)
+.+.+.+++||.+.+||+++|+|.||||||-.+..++++|+.++ +|.|.++|.++.. .++. ++++..|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 36778899999999999999999999999999999999997532 6899999998753 1111 1222222
Q ss_pred hH--------------HHHHHH---H------HHHHHHHHhCCcce-------eeccCChHHHHHH-HHHHhCCCCCccE
Q 024315 155 DR--------------VENIRR---I------GEVAKLFADAGVIC-------IACLISPYRKDRD-ACRSMLPEGDFIE 203 (269)
Q Consensus 155 ~~--------------~~~~~~---l------~~~a~~~~~~g~~~-------iv~~~~~~~~~r~-~ar~ll~~~~~~~ 203 (269)
+- .+.++. + .+...++...|+.. +.-.+++++++|- ++.+++.+|++
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~l-- 178 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL-- 178 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCe--
Confidence 11 111110 0 11223344444422 3334577788885 88999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHH
Q 024315 204 VFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
+.-|+|+-.++--....+.+.+
T Consensus 179 LIADEPTTALDVtvQaQIL~Ll 200 (534)
T COG4172 179 LIADEPTTALDVTVQAQILDLL 200 (534)
T ss_pred EeecCCcchhhhhhHHHHHHHH
Confidence 8999999999887776644443
No 384
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=106.06 Aligned_cols=141 Identities=19% Similarity=0.167 Sum_probs=86.5
Q ss_pred ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc-c---cCCCCChhh
Q 024315 81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-N---RDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l-~---~~~g~~~~~ 155 (269)
++.+.+.. ....++.++.+++|+.|+|+||||+|||||++.|++.+. +.+|.|.+... +.-+. . ..+. ....
T Consensus 326 ~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~-v~igyf~Q~~~~l~-~~~t 402 (530)
T COG0488 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGET-VKIGYFDQHRDELD-PDKT 402 (530)
T ss_pred ccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCCc-eEEEEEEehhhhcC-ccCc
Confidence 44444422 344567899999999999999999999999999999885 44777776543 22100 0 0000 1111
Q ss_pred HHHHHHHH------HHHHHHHHhCCcc-----eeeccCChHHHHHH-HHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315 156 RVENIRRI------GEVAKLFADAGVI-----CIACLISPYRKDRD-ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (269)
Q Consensus 156 ~~~~~~~l------~~~a~~~~~~g~~-----~iv~~~~~~~~~r~-~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~ 223 (269)
..++++.. ..+-..+..++.. .-+..+|++++.|- .++-++..+++ +.+|||++.++--....+.+
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv--LiLDEPTNhLDi~s~~aLe~ 480 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL--LLLDEPTNHLDIESLEALEE 480 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE--EEEcCCCccCCHHHHHHHHH
Confidence 11111111 1122233333432 23445677777774 66666777888 89999999999877666665
Q ss_pred HHh
Q 024315 224 LAR 226 (269)
Q Consensus 224 ~~r 226 (269)
.+.
T Consensus 481 aL~ 483 (530)
T COG0488 481 ALL 483 (530)
T ss_pred HHH
Confidence 555
No 385
>PLN03140 ABC transporter G family member; Provisional
Probab=98.98 E-value=1.1e-09 Score=118.01 Aligned_cols=136 Identities=15% Similarity=0.091 Sum_probs=91.5
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC---ccEEEECCeecCcc-cccCCCCChhhH-------
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG-LNRDLSFKAEDR------- 156 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~---~g~i~l~g~~~~~~-l~~~~g~~~~~~------- 156 (269)
.....+++++.+++|++++|+||||||||||+++|++++. +. +|.|.++|.++... .++.++|..|+.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 4567888999999999999999999999999999999984 44 79999999876321 112222222210
Q ss_pred -HHHHHH---H---------------H----------------------------HHHHHHHhCCcce---------eec
Q 024315 157 -VENIRR---I---------------G----------------------------EVAKLFADAGVIC---------IAC 180 (269)
Q Consensus 157 -~~~~~~---l---------------~----------------------------~~a~~~~~~g~~~---------iv~ 180 (269)
.+.+.. + . ....++...|+.. .+.
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 010000 0 0 0112333344422 123
Q ss_pred cCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 181 LISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 181 ~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
..++++++| ..+++++.++++ +++|||+..+|......+.+.++
T Consensus 336 glSGGerkRVsia~aL~~~p~v--lllDEPTsGLDs~t~~~i~~~Lr 380 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKT--LFMDEISTGLDSSTTYQIVKCLQ 380 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcE--EEEeCCCcCccHHHHHHHHHHHH
Confidence 456677777 588999999988 99999999999988887665554
No 386
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.96 E-value=1.5e-09 Score=117.38 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=85.2
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c--cc-----ccCCCCChhhHHHHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H--GL-----NRDLSFKAEDRVENIR 161 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~--~l-----~~~~g~~~~~~~~~~~ 161 (269)
..+++++.+++|++++|+||||||||||+++|+|.++ +.+|.|.++|.-.. . .+ +.++.+......+.+.
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 519 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT 519 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHH
Confidence 5678899999999999999999999999999999884 66899999874110 0 11 1111111000001111
Q ss_pred HHHHH---HHHHHh--CCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 162 RIGEV---AKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 162 ~l~~~---a~~~~~--~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
.+... ...+.. .|.. .-...+++++++| ..+|+++.++++ +++|+|+..+|....+.+++.
T Consensus 520 ~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i--llLDep~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 520 SVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFTHLDVVTEKEIFES 590 (1490)
T ss_pred HHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence 11111 111111 1111 1133457777777 699999999999 999999999999988887753
No 387
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.93 E-value=8.5e-09 Score=90.27 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=30.4
Q ss_pred eCceeeccCcceecCCCeEEEEEcCCCChHHHHH
Q 024315 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (269)
Q Consensus 86 ~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla 119 (269)
+..+.+.+.+||.+++|++++|+|+||||||||+
T Consensus 5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred cchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3456678889999999999999999999999996
No 388
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.92 E-value=1.4e-08 Score=107.39 Aligned_cols=145 Identities=19% Similarity=0.197 Sum_probs=100.6
Q ss_pred cceEEeeCceeec-------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccC
Q 024315 80 TNILWHKNSVDKR-------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRD 148 (269)
Q Consensus 80 ~~~~~~~~~v~~~-------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~ 148 (269)
+.+++++..++|- +++++++++||.|+|+|..|||||||+.+|-|+. ++.+|.|.+||.|+.+ .||+.
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccCCeEEEcCeecccccHHHHHhc
Confidence 4566666666654 5568999999999999999999999999999987 5678999999999874 45544
Q ss_pred CCCChh----------------------hHHHHHHHHHHHHHHHH-hCCcceee----ccCChHHHHH-HHHHHhCCCCC
Q 024315 149 LSFKAE----------------------DRVENIRRIGEVAKLFA-DAGVICIA----CLISPYRKDR-DACRSMLPEGD 200 (269)
Q Consensus 149 ~g~~~~----------------------~~~~~~~~l~~~a~~~~-~~g~~~iv----~~~~~~~~~r-~~ar~ll~~~~ 200 (269)
+++-+| +..+.+.+..-...+-. ..++...+ ...+.+++|. -.+|+++.+.+
T Consensus 1216 lsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 443333 33333332211111111 12333322 2235555555 58999999999
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+ +.+||.++..|.....-+.+.+|+
T Consensus 1296 I--LvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1296 I--LVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred E--EEEecccccCChHHHHHHHHHHHH
Confidence 9 899999999998887777777764
No 389
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.91 E-value=6e-10 Score=101.78 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=48.3
Q ss_pred CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhccccccccccccc
Q 024315 12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNS 74 (269)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~ 74 (269)
...+|.+||||+|.|++..|+. +|.+|+.||+||+|||++|. |+|||||...
T Consensus 362 ~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~tn~-----------TVgaGmI~~~ 415 (431)
T COG2895 362 GAESLPLNEIGRVRISFDKPIAFDAYAENRATGSFILIDRLTNG-----------TVGAGMILAS 415 (431)
T ss_pred cccccCCCcceEEEEecCCceeecccccCcccccEEEEEcCCCC-----------ceeceeeech
Confidence 3467999999999999999999 99999999999999999997 9999999763
No 390
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.90 E-value=1.5e-09 Score=93.20 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=76.8
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--------CccEEEECCeecCc-ccccCCCCChhhHHHH---
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--------GKLTYILDGDNCRH-GLNRDLSFKAEDRVEN--- 159 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--------~~g~i~l~g~~~~~-~l~~~~g~~~~~~~~~--- 159 (269)
.++.++.+.+| +++|+|+||||||||+++|.+.+++. ..+.+.+.+.+... .....+++..|+....
T Consensus 13 ~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~ 91 (197)
T cd03278 13 ADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI 91 (197)
T ss_pred CCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence 46778889999 99999999999999999999887432 01234444544321 1112223333321100
Q ss_pred --HHHHHHHHHHHHhCCc-ceeeccCChHHHHH-HHHHHhC----CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 160 --IRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 160 --~~~l~~~a~~~~~~g~-~~iv~~~~~~~~~r-~~ar~ll----~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
..++.+.... .+. ...+...++++++| ..++.++ ..+++ +++|||+..++......+.+.+++
T Consensus 92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~i--lllDEP~~~LD~~~~~~l~~~l~~ 162 (197)
T cd03278 92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPF--CVLDEVDAALDDANVERFARLLKE 162 (197)
T ss_pred EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 1111222211 221 12233456666666 5666654 44567 899999999999888877666553
No 391
>PTZ00243 ABC transporter; Provisional
Probab=98.88 E-value=4.9e-09 Score=113.85 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=83.0
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---c--cc-----ccCCCCChhhHH
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---H--GL-----NRDLSFKAEDRV 157 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~--~l-----~~~~g~~~~~~~ 157 (269)
+....+++++.+++|++++|+|+||||||||++.|+|.+. +.+|.+.+++. +. . .+ +.++.+......
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~~~-i~yv~Q~~~l~~~Tv~enI~~~~~~~~ 749 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERS-IAYVPQQAWIMNATVRGNILFFDEEDA 749 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCe-EEEEeCCCccCCCcHHHHHHcCChhhH
Confidence 3446778899999999999999999999999999999884 56788876532 11 0 01 001111100001
Q ss_pred HHHHHHHH---HHHHHHhC--Cc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315 158 ENIRRIGE---VAKLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (269)
Q Consensus 158 ~~~~~l~~---~a~~~~~~--g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~ 223 (269)
+.+....+ ....+... |. ......+++++++| ..+|+++.++++ +++|+|+..+|....+.+.+
T Consensus 750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~i--llLDEP~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDV--YLLDDPLSALDAHVGERVVE 823 (1560)
T ss_pred HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCccccCCHHHHHHHHH
Confidence 11111111 11111111 22 12234467777777 699999999999 99999999999877666543
No 392
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.88 E-value=1.8e-09 Score=89.50 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH------HHHHHHHHH-HHHHHh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV------ENIRRIGEV-AKLFAD 172 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~------~~~~~l~~~-a~~~~~ 172 (269)
.++..++|+|++||||||+++.|+..+.. .+++.+.+.... .+.+..+.. .......+. ..+...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~-----~~~d~d~~~~~~---~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 73 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGY-----DFIDTDHLIEAR---AGKSIPEIFEEEGEAAFRELEEEVLAELLAR 73 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEChHHHHHH---cCCCHHHHHHHHCHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999998843 367777654321 122221111 111111121 122222
Q ss_pred CCcceeeccCC--hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH-Hh-cCccccccccccccCC-C-CCC
Q 024315 173 AGVICIACLIS--PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL-AR-EGKVKGFTGIDDPYEP-P-LNC 246 (269)
Q Consensus 173 ~g~~~iv~~~~--~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~-~r-~g~~~~~~~i~~~~e~-p-~~~ 246 (269)
.+. ++....+ .....+..++ . ....+|+++|.+.+.+|..++..+. .. ......+..+.....+ . ..+
T Consensus 74 ~~~-vi~~g~~~~~~~~~r~~l~---~--~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
T PRK00131 74 HNL-VISTGGGAVLREENRALLR---E--RGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVA 147 (175)
T ss_pred CCC-EEEeCCCEeecHHHHHHHH---h--CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhc
Confidence 232 2222111 1223333332 2 2345899999999988875432100 00 0000001111111111 1 126
Q ss_pred CeEEEcCCCcCHHHHHH-HHhhc
Q 024315 247 EVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 247 e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
+++|||+ ..+++++.. |.+++
T Consensus 148 dl~idt~-~~~~~e~~~~I~~~v 169 (175)
T PRK00131 148 DITVETD-GRSPEEVVNEILEKL 169 (175)
T ss_pred CeEEeCC-CCCHHHHHHHHHHHH
Confidence 8999995 788998888 66554
No 393
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.87 E-value=3.8e-09 Score=84.87 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=72.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCC----CChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS----FKAEDRVENIRRIGEVAKLFADAGVICIA 179 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g----~~~~~~~~~~~~l~~~a~~~~~~g~~~iv 179 (269)
++.++|++||||||+++.|.+.+. ...++.|.++..+..... ...+........+..........|...++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv 75 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV 75 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 578999999999999999998764 567888887654433211 11222222233333444445567777777
Q ss_pred ccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhh
Q 024315 180 CLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 180 ~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~ 220 (269)
+........++.+.+++... ++..|++++|.+.+.+|..++
T Consensus 76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 76666667777776666533 455589999999999887443
No 394
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.87 E-value=1.1e-08 Score=100.30 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=87.4
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCc----------ccccCC-------CCC
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRH----------GLNRDL-------SFK 152 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~----------~l~~~~-------g~~ 152 (269)
..+..++.+++|+-+.|.|+||||||||.|+|+|+-+ -++|.|..-.+. +.. .|+..+ .++
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~ 486 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-WGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFS 486 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-cCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCC
Confidence 3455689999999999999999999999999999874 456766655332 110 111111 134
Q ss_pred hhhHHHHHHHH--HHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 153 AEDRVENIRRI--GEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 153 ~~~~~~~~~~l--~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++..+.+..+ ++.+..+.+..- =-..++++++|| ..||-++.+|++ +++||.++.+++....++|+.+++
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~~~--W~~vLS~GEqQRlafARilL~kP~~--v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEEDR--WDRVLSGGEQQRLAFARLLLHKPKW--VFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhccCc--HhhhcChhHHHHHHHHHHHHcCCCE--EEEecchhccChHHHHHHHHHHHh
Confidence 44443333221 122222221111 011246677777 688999999999 999999999999999999988775
No 395
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.86 E-value=1.5e-09 Score=112.72 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=85.9
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECCeecC-cccccCCCCChhhH-------------
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCR-HGLNRDLSFKAEDR------------- 156 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g~~~~-~~l~~~~g~~~~~~------------- 156 (269)
.+++=.+.||.+.+|+|+||||||||++.|+++. ..| .|.|+++|.+.. ...++..||..|..
T Consensus 808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~-t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~ 886 (1391)
T KOG0065|consen 808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK-TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLR 886 (1391)
T ss_pred hcCceEecCCceeehhcCCCCchHHHHHHHhcCc-ccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHH
Confidence 4556778999999999999999999999999987 344 789999999887 44555556555421
Q ss_pred -------------HHHHHHHHHHHHHHHhCCcce-eecc----CChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 157 -------------VENIRRIGEVAKLFADAGVIC-IACL----ISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 157 -------------~~~~~~l~~~a~~~~~~g~~~-iv~~----~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
.+..+.+.++..++.-..+.+ ++.. ++..++.| -++-+++.+|+.+ ++||||+..||.|.
T Consensus 887 fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i-lFLDEPTSGLDsqa 965 (1391)
T KOG0065|consen 887 FSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSI-LFLDEPTSGLDSQA 965 (1391)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCcee-EEecCCCCCccHHH
Confidence 123344444444432221111 2211 34433333 3677888888443 89999999999998
Q ss_pred hhhHH
Q 024315 218 PKGLY 222 (269)
Q Consensus 218 ~k~l~ 222 (269)
..-+.
T Consensus 966 A~~i~ 970 (1391)
T KOG0065|consen 966 AAIVM 970 (1391)
T ss_pred HHHHH
Confidence 76533
No 396
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.83 E-value=9e-08 Score=80.27 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
|++++|+|+|||||||+++.|+..+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999875
No 397
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.82 E-value=1.1e-08 Score=105.81 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=97.7
Q ss_pred ceEEeeCcee-eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 81 NILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~v~-~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
++...++... +..+.++.+++||+.++.|+|||||||+.+.|.|.. .+.+|.+++.|.++... .++.+||.+|
T Consensus 569 ~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ 647 (885)
T KOG0059|consen 569 NLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQ 647 (885)
T ss_pred ceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhcccCCc
Confidence 4444444444 778899999999999999999999999999999987 57789999999887642 4566898888
Q ss_pred hHH-----------HHHHHHH--------H-HHHHHHhCCcce-----eeccCChHHHHHHHHHHhCCCCCccEEEEeCC
Q 024315 155 DRV-----------ENIRRIG--------E-VAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 155 ~~~-----------~~~~~l~--------~-~a~~~~~~g~~~-----iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p 209 (269)
... +.+.++. + +..++...++.. +...+.+.++....+.+++.++++ |++|+|
T Consensus 648 ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v--i~LDEP 725 (885)
T KOG0059|consen 648 FDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV--ILLDEP 725 (885)
T ss_pred hhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE--EEecCC
Confidence 532 2222221 1 122222333322 233334444455788999999999 999999
Q ss_pred hhHHHhcChhhHH
Q 024315 210 LQVCEARDPKGLY 222 (269)
Q Consensus 210 ~~~l~~R~~k~l~ 222 (269)
....|+..++.+.
T Consensus 726 stGmDP~arr~lW 738 (885)
T KOG0059|consen 726 STGLDPKARRHLW 738 (885)
T ss_pred CCCCCHHHHHHHH
Confidence 9999987766644
No 398
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.80 E-value=6.3e-08 Score=82.07 Aligned_cols=149 Identities=16% Similarity=0.196 Sum_probs=78.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----cccCCCCChhhHHHHHHHHHH------------
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAEDRVENIRRIGE------------ 165 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l~~~~g~~~~~~~~~~~~l~~------------ 165 (269)
|++++|+||||||||||++.|++.+.. .+.+.+..+... ......+..++..+.+..-..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT----QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC----eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 689999999999999999999987642 355555544321 112344555554433211100
Q ss_pred ---HHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcc-cccc-cc-ccc
Q 024315 166 ---VAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV-KGFT-GI-DDP 239 (269)
Q Consensus 166 ---~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~-~~~~-~i-~~~ 239 (269)
........+..++.. +........+..+.. .+..+++++|.+.+.+|..++ .+.. +.+. .+ ...
T Consensus 78 ~~~~~~~~l~~g~~VI~~---G~~~~~~~~~~~~~~-~~~vi~l~~s~e~l~~RL~~R------~~~~~~~i~~rl~r~~ 147 (186)
T PRK10078 78 VGIEIDLWLHAGFDVLVN---GSRAHLPQARARYQS-ALLPVCLQVSPEILRQRLENR------GRENASEINARLARAA 147 (186)
T ss_pred CcHHHHHHHhCCCEEEEe---ChHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHHHh------CCCCHHHHHHHHHHhh
Confidence 001111234434432 223333344444433 344489999999999888432 1111 0010 00 111
Q ss_pred cCCCCCCC-eEEEcCCCcCHHHHHH-HHhhc
Q 024315 240 YEPPLNCE-VGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 240 ~e~p~~~e-~~id~~~~~~~~~~~~-i~~~~ 268 (269)
++.. .+ ++|++ ..+++++.. |.++|
T Consensus 148 ~~~~--ad~~vi~~--~~s~ee~~~~i~~~l 174 (186)
T PRK10078 148 RYQP--QDCHTLNN--DGSLRQSVDTLLTLL 174 (186)
T ss_pred hhcc--CCEEEEeC--CCCHHHHHHHHHHHH
Confidence 2222 34 67775 346777776 77665
No 399
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.80 E-value=3.4e-08 Score=84.69 Aligned_cols=143 Identities=22% Similarity=0.215 Sum_probs=84.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc-cCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLI 182 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~-~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~ 182 (269)
++.++|++||||||+++.|++.|...+..++.+..|-.+--+. ..++.-.+..++....-........-.+..++++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~VIvDdt 82 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYLVIVDDT 82 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceEEEEecc
Confidence 5789999999999999999999976655666665543331110 112222233332221111111111112557888888
Q ss_pred ChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCcccc--ccccccccCCCC------CCCeEEEc
Q 024315 183 SPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG--FTGIDDPYEPPL------NCEVGVHV 252 (269)
Q Consensus 183 ~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~--~~~i~~~~e~p~------~~e~~id~ 252 (269)
..++..|.++...+.+ ..+..|++.+|++.|..|+. .+.-.|++ +..+.+.||+|. +|-++||+
T Consensus 83 NYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~------ergepip~Evl~qly~RfEePn~~~rWDspll~id~ 156 (261)
T COG4088 83 NYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR------ERGEPIPEEVLRQLYDRFEEPNPDRRWDSPLLVIDD 156 (261)
T ss_pred cHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc------cCCCCCCHHHHHHHHHhhcCCCCCccccCceEEEec
Confidence 7776666443333332 35566999999999998883 33333433 345556777765 46689995
No 400
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.80 E-value=3.4e-08 Score=88.84 Aligned_cols=152 Identities=20% Similarity=0.278 Sum_probs=77.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH-HHHHH-HHHHHHHhCCcceeecc
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN-IRRIG-EVAKLFADAGVICIACL 181 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~-~~~l~-~~a~~~~~~g~~~iv~~ 181 (269)
++.|+|.+||||||+++.|...+...+...+.++.+.+. +.... |......+. ...+. .+...+ ....++|++.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~-y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd 78 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND-YADSKKEKEARGSLKSAVERAL-SKDTIVILDD 78 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS-S--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh-hhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeC
Confidence 688999999999999999999987766667788766654 21221 432222222 22222 233333 3456777777
Q ss_pred CChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccc--cccccccccCCCCC------CCeEEE
Q 024315 182 ISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK--GFTGIDDPYEPPLN------CEVGVH 251 (269)
Q Consensus 182 ~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~--~~~~i~~~~e~p~~------~e~~id 251 (269)
....+-.|-.+..+... ..+..|++++|++.|..|+.++-. ...+. .+..+...||+|+. |-++|+
T Consensus 79 ~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~----~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~ 154 (270)
T PF08433_consen 79 NNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE----PERYPEETIDDMIQRFEEPDPKNRWDSPLFTID 154 (270)
T ss_dssp ---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-----S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE
T ss_pred CchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC----CCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEe
Confidence 76556555433333332 356679999999999999854431 10121 13444466888774 568999
Q ss_pred -cCCCcCHHHHHH
Q 024315 252 -VWYRFELAETWR 263 (269)
Q Consensus 252 -~~~~~~~~~~~~ 263 (269)
.+...+.++++.
T Consensus 155 ~~~~~~~~~~I~~ 167 (270)
T PF08433_consen 155 SSDEELPLEEIWN 167 (270)
T ss_dssp -TTS---HHHHHH
T ss_pred cCCCCCCHHHHHH
Confidence 455666666665
No 401
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.80 E-value=2.5e-08 Score=90.41 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=71.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC-----CCCChhhHHHHHHHHHHHHHHHHhCCcce
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVIC 177 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~-----~g~~~~~~~~~~~~l~~~a~~~~~~g~~~ 177 (269)
.++.++|++||||||+++.|+..++ +.+.++.|.++..+... ..+..+..........+.+......|..+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 78 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSV 78 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 5788999999999999999999873 35788888877544221 12221111111111122222233456666
Q ss_pred eeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhh
Q 024315 178 IACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 178 iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
+++.......+++...+++.. ..+..+++++|.+.+.+|..++
T Consensus 79 Iid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R 123 (300)
T PHA02530 79 IISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR 123 (300)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence 776665555666655555432 2455589999999999998655
No 402
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.79 E-value=3.5e-08 Score=81.46 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=84.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHH-------HHHHHHHHHHhCCcc
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-------RIGEVAKLFADAGVI 176 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~-------~l~~~a~~~~~~g~~ 176 (269)
+|.|-|++||||||+++.|+..+.-+ +++.-.+...+.+..|++-++..+.-. .+......+...+-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-----~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nv 76 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-----LVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNV 76 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-----eeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCe
Confidence 57899999999999999999988643 444434444555556777665542211 111222223333333
Q ss_pred eeeccCChHHHHHHHHHHhCC-CCCccEEEEeCChhHHHhcChhh----HHHH---Hh------cCccccccccccccCC
Q 024315 177 CIACLISPYRKDRDACRSMLP-EGDFIEVFMDVPLQVCEARDPKG----LYKL---AR------EGKVKGFTGIDDPYEP 242 (269)
Q Consensus 177 ~iv~~~~~~~~~r~~ar~ll~-~~~~~~i~ld~p~~~l~~R~~k~----l~~~---~r------~g~~~~~~~i~~~~e~ 242 (269)
++-..+.+ -++. .++ +.||+.+|+++..+|..++ +... .. .-++..++++|-..
T Consensus 77 VlegrLA~---------Wi~k~~ad-lkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidD-- 144 (179)
T COG1102 77 VLEGRLAG---------WIVREYAD-LKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDD-- 144 (179)
T ss_pred EEhhhhHH---------HHhccccc-eEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcc--
Confidence 33222221 1222 233 3489999999999988655 1111 11 11334466777221
Q ss_pred CCCCCeEEEcCCCcCHHHHHHHHh
Q 024315 243 PLNCEVGVHVWYRFELAETWRITK 266 (269)
Q Consensus 243 p~~~e~~id~~~~~~~~~~~~i~~ 266 (269)
.+-.|++|+|+ .++++++..|+.
T Consensus 145 lSiyDLVinTs-~~~~~~v~~il~ 167 (179)
T COG1102 145 LSIYDLVINTS-KWDPEEVFLILL 167 (179)
T ss_pred ceeeEEEEecc-cCCHHHHHHHHH
Confidence 33358999995 999999888764
No 403
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.78 E-value=1.5e-08 Score=98.76 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=89.6
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcc
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI 176 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~ 176 (269)
+.-.+.+++.++|++||||||+++.+.... |.++++-|.+. .+......+......|..
T Consensus 364 ~~~~~p~LVil~G~pGSGKST~A~~l~~~~-----g~~~vn~D~lg----------------~~~~~~~~a~~~L~~G~s 422 (526)
T TIGR01663 364 LDDAPCEMVIAVGFPGAGKSHFCKKFFQPA-----GYKHVNADTLG----------------STQNCLTACERALDQGKR 422 (526)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHHHc-----CCeEECcHHHH----------------HHHHHHHHHHHHHhCCCc
Confidence 344678999999999999999999998753 35677766542 112222334445567888
Q ss_pred eeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhHHHHHhcCcc--ccccccccccCCCCCCC
Q 024315 177 CIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKV--KGFTGIDDPYEPPLNCE 247 (269)
Q Consensus 177 ~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~--~~~~~i~~~~e~p~~~e 247 (269)
++++.....+..|..+.+++... ++..++++.|.+.|..|+..+.........+ ..+..+...||+|...|
T Consensus 423 VVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~~E 497 (526)
T TIGR01663 423 CAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPALAE 497 (526)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCccc
Confidence 88888888777887777666543 5666899999999999986664321222233 22556667899998666
No 404
>PRK04182 cytidylate kinase; Provisional
Probab=98.74 E-value=6.8e-08 Score=80.47 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=73.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH-------HHHHHHHHHHHH-hCCc
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN-------IRRIGEVAKLFA-DAGV 175 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~-------~~~l~~~a~~~~-~~g~ 175 (269)
+|+|+|++||||||+++.|+..+.-+ +++-+++........++...+..+. ...+........ ..+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~-----~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLK-----HVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDN 76 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----EecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999887532 5663222211111123322221110 011111111122 2222
Q ss_pred ceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhH----HHH---------HhcCccccccccccccCC
Q 024315 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL----YKL---------AREGKVKGFTGIDDPYEP 242 (269)
Q Consensus 176 ~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l----~~~---------~r~g~~~~~~~i~~~~e~ 242 (269)
.++...... .++.......|++++|++.+.+|..++. .+. .+...+..+++.+.. .
T Consensus 77 ~Vi~g~~~~---------~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~--~ 145 (180)
T PRK04182 77 VVLEGRLAG---------WMAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDID--D 145 (180)
T ss_pred EEEEEeecc---------eEecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc--c
Confidence 222211111 0111112345899999999988875431 111 011112233333322 2
Q ss_pred CCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 243 PLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 243 p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
+..++++|||+ ..++++|.. |.+.
T Consensus 146 ~~~~d~~idt~-~~~~~~~~~~I~~~ 170 (180)
T PRK04182 146 LSIYDLVINTS-RWDPEGVFDIILTA 170 (180)
T ss_pred cccccEEEECC-CCCHHHHHHHHHHH
Confidence 45688999995 788999987 5543
No 405
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.74 E-value=9.6e-08 Score=92.80 Aligned_cols=51 Identities=29% Similarity=0.343 Sum_probs=40.9
Q ss_pred eeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 85 ~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..+.++-.|+..+.. +|.+++|.|+|||||||+++.|++.|. ..+++.+.+
T Consensus 268 ~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~-----~~~~d~g~~ 318 (512)
T PRK13477 268 RCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG-----LLYLDTGAM 318 (512)
T ss_pred EeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC-----CeEecCCce
Confidence 345677778888766 889999999999999999999999884 456765544
No 406
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.72 E-value=3.9e-08 Score=104.00 Aligned_cols=145 Identities=18% Similarity=0.281 Sum_probs=97.3
Q ss_pred ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---------cccccCCC
Q 024315 81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---------HGLNRDLS 150 (269)
Q Consensus 81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---------~~l~~~~g 150 (269)
...|... +.....+.++.+++|++++++|+-|||||+|+.+|.|.++ .-+|.+.++|.-.- ..++.++-
T Consensus 525 sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gsiaYv~Q~pWI~ngTvreNIL 603 (1381)
T KOG0054|consen 525 SFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAVNGSVAYVPQQPWIQNGTVRENIL 603 (1381)
T ss_pred eEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccceEEEcCeEEEeccccHhhCCcHHHhhh
Confidence 3456542 2225678899999999999999999999999999999995 55889999886211 01222333
Q ss_pred CChhhHHHHHHHHHHHHH------HHHhCCccee---eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315 151 FKAEDRVENIRRIGEVAK------LFADAGVICI---ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 151 ~~~~~~~~~~~~l~~~a~------~~~~~g~~~i---v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
|..+-..++++.+-+... ++..--..++ ...++++|++| ..||++.+++++ .++|-|+..+|....+.
T Consensus 604 FG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI--YLLDDplSAVDahvg~~ 681 (1381)
T KOG0054|consen 604 FGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI--YLLDDPLSAVDAHVGKH 681 (1381)
T ss_pred cCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE--EEEcCcchhhhHhhhHH
Confidence 332222334444433322 2222122233 23457888888 699999999888 79999999999999888
Q ss_pred HHHHHhcC
Q 024315 221 LYKLAREG 228 (269)
Q Consensus 221 l~~~~r~g 228 (269)
+++.--.|
T Consensus 682 if~~ci~~ 689 (1381)
T KOG0054|consen 682 IFEECIRG 689 (1381)
T ss_pred HHHHHHHh
Confidence 77554333
No 407
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.7e-08 Score=94.91 Aligned_cols=139 Identities=21% Similarity=0.237 Sum_probs=81.7
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccE-EEECCeecCc---ccccCC---CCCh
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT-YILDGDNCRH---GLNRDL---SFKA 153 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~-i~l~g~~~~~---~l~~~~---g~~~ 153 (269)
++++.++......++++++..|..++|||+||+|||||+++|+.- +-.+-++ =-+.|+++.+ .+..+. .+..
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~ 163 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLA 163 (582)
T ss_pred eeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHH
Confidence 455555555566778999999999999999999999999999971 1110000 0122333321 111110 0111
Q ss_pred hhHHHHHH-HHHHHHH-HHHhCCcc------eeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315 154 EDRVENIR-RIGEVAK-LFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 154 ~~~~~~~~-~l~~~a~-~~~~~g~~------~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~ 222 (269)
++..-..+ .+.++.. ++...|.. .+..++.+++=..+.+|+++.+|++ +++|+|+..|+-+...=|.
T Consensus 164 ~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDl--LLLDEPTNhLDv~av~WLe 238 (582)
T KOG0062|consen 164 EEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDL--LLLDEPTNHLDVVAVAWLE 238 (582)
T ss_pred hhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCE--EeecCCcccchhHHHHHHH
Confidence 11000011 1223333 44455553 2344555555445899999999999 9999999999877654443
No 408
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.71 E-value=2.6e-07 Score=82.76 Aligned_cols=135 Identities=20% Similarity=0.268 Sum_probs=80.1
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHH-----Hhhcc----CC-----------ccEEEECCeecCcccccCC
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-----QALHW----RG-----------KLTYILDGDNCRHGLNRDL 149 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~-----~~l~~----~~-----------~g~i~l~g~~~~~~l~~~~ 149 (269)
....++++.++.|.+++|+|.||||||||++.+. +.+.. ++ ...+.+|..++....+...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3456778889999999999999999999998552 22211 10 2256777766643221110
Q ss_pred ---------------------CCCh--------------------hhHHHHHHH---HHHHHHHHHhCCcce-----eec
Q 024315 150 ---------------------SFKA--------------------EDRVENIRR---IGEVAKLFADAGVIC-----IAC 180 (269)
Q Consensus 150 ---------------------g~~~--------------------~~~~~~~~~---l~~~a~~~~~~g~~~-----iv~ 180 (269)
.|.+ .+..+.+.. +.+....+...++.. ...
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 0111 111111111 112223344444432 133
Q ss_pred cCChHHHHH-HHHHHhCCC---CCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 181 LISPYRKDR-DACRSMLPE---GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 181 ~~~~~~~~r-~~ar~ll~~---~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
..++++++| ..+++++.+ +++ +++|||+..++....+.+.+.++
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~l--llLDEPtsgLD~~~~~~l~~~L~ 216 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTL--YILDEPTTGLHFHDVKKLLEVLQ 216 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcE--EEEECCCCCCCHHHHHHHHHHHH
Confidence 446666666 688888875 466 89999999999998887665544
No 409
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.68 E-value=1.5e-08 Score=95.10 Aligned_cols=158 Identities=24% Similarity=0.286 Sum_probs=88.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH-HHHHHHHHHHHHhCCccee
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN-IRRIGEVAKLFADAGVICI 178 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~-~~~l~~~a~~~~~~g~~~i 178 (269)
..|.++||+|+||||||||+..|.+.|... ..+..+... ..+..+..+++... +++.+..+..+...+...+
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~------~~~~~~d~~~~d~~~~~~aga~~~~~~~~~~~~~ 75 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG------CHRFDIDREGKDSDLARKAGASTVMISDPEKHAL 75 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC------CCCCCCCcccchHHHHHhccCcEEEEecCCEEEE
Confidence 468899999999999999999999998644 222333211 11123444444332 2222222222333344444
Q ss_pred eccCChHHHHHHHHHHhCCCCC--ccEEEEeCChh--HHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCC
Q 024315 179 ACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQ--VCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWY 254 (269)
Q Consensus 179 v~~~~~~~~~r~~ar~ll~~~~--~~~i~ld~p~~--~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~ 254 (269)
+....+ .+...+..+...+ ++|.|.++|.. +|..|+.+.+ ..+..|+..++.++...+++|..++..++..+
T Consensus 76 ~~~~~~---~~~~~~~~~~~~D~vlvEG~k~~~~pki~~~~~~~~~~-~~~~~~~~~~v~av~~~~~~~~~~~~~~p~~~ 151 (369)
T PRK14490 76 IAGGPP---DPLLERGAFLDCDLLLVEGLKELPLPKILLVDRERKIL-DLLEQGSVTNVVALVVPDDPASYPDFGLPVFH 151 (369)
T ss_pred EEeCCC---ChHHHHhccCCCCEEEECCCCCCCCCeEEEEeCCCCcc-cccccCCCCCEEEEEECCcccccccCCCcccC
Confidence 433332 2233333444445 34457788887 6665654433 34556677788888877777654455455323
Q ss_pred CcCHHHHHH-HHhhc
Q 024315 255 RFELAETWR-ITKWL 268 (269)
Q Consensus 255 ~~~~~~~~~-i~~~~ 268 (269)
.-++++.+. |.+|+
T Consensus 152 ~~~~~~~~~~i~~~~ 166 (369)
T PRK14490 152 RDDIAAIADFIEGHL 166 (369)
T ss_pred cccHHHHHHHHHHHH
Confidence 455666665 66654
No 410
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.68 E-value=5.5e-08 Score=85.53 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=33.1
Q ss_pred cCChHHHHH-HHHHHhC----CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 181 LISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 181 ~~~~~~~~r-~~ar~ll----~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
..++++++| ..+++++ ..+++ +++|||+..++....+.+++.+++
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~i--lllDEp~~~ld~~~~~~~~~~l~~ 207 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPF--YLFDEIDAALDAQYRTAVANMIKE 207 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCE--EEEECCccCCCHHHHHHHHHHHHH
Confidence 345566666 5777774 34677 899999999999988887766553
No 411
>PRK13948 shikimate kinase; Provisional
Probab=98.67 E-value=5.6e-08 Score=82.57 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=78.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADA 173 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~ 173 (269)
+++..|.|+|.+||||||+++.|+..+..+ ++|-|...... .+.+..+.. ..++.+ .++...+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~-----~iD~D~~ie~~---~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~ 79 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLH-----FIDTDRYIERV---TGKSIPEIFRHLGEAYFRRCEAEVVRRLTRL 79 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEECCHHHHHH---HhCCHHHHHHHhCHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999988533 67777554221 133332211 111211 1112222222
Q ss_pred CcceeeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcC----ccccccccccc-cCCCCC
Q 024315 174 GVICIACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG----KVKGFTGIDDP-YEPPLN 245 (269)
Q Consensus 174 g~~~iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g----~~~~~~~i~~~-~e~p~~ 245 (269)
+-. +++.+.+ ..+.++.+++ ...+ ||++.|.+.+.+|....-......+ .+..+.....+ |+ .
T Consensus 80 ~~~-VIa~GgG~v~~~~n~~~l~~---~g~v--V~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~---~ 150 (182)
T PRK13948 80 DYA-VISLGGGTFMHEENRRKLLS---RGPV--VVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYR---Q 150 (182)
T ss_pred CCe-EEECCCcEEcCHHHHHHHHc---CCeE--EEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHH---h
Confidence 222 3333221 2334444332 3233 8999999999998732210001110 01111111122 42 2
Q ss_pred CCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 246 CEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 246 ~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
++++|+|+ ..++++++. |.+.|
T Consensus 151 a~~~i~t~-~~~~~ei~~~i~~~l 173 (182)
T PRK13948 151 ATIHVSTD-GRRSEEVVEEIVEKL 173 (182)
T ss_pred CCEEEECC-CCCHHHHHHHHHHHH
Confidence 78999995 566666665 76654
No 412
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.66 E-value=1.2e-07 Score=79.66 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=74.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGV 175 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~ 175 (269)
...|+|+|++||||||+++.|++.+.-+ +++.|....... +.+..+.. ..++.. .+....+...+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~-----~vd~D~~i~~~~---g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~ 75 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRT---GADIGWVFDVEGEEGFRDREEKVINELTEKQG 75 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCc-----EEECCchHHHHh---CcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987422 566654332111 11111110 011111 111112222222
Q ss_pred ceeeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCcccc-cc---ccc-cccCCCCCC
Q 024315 176 ICIACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGKVKG-FT---GID-DPYEPPLNC 246 (269)
Q Consensus 176 ~~iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~~~~-~~---~i~-~~~e~p~~~ 246 (269)
. ++..+.+ ....+..++ +..+ .||++.|++.|.+|...+-.+ ...++.... +. ..+ ..|+. .+
T Consensus 76 ~-vi~~ggg~v~~~~~~~~l~----~~~~-vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~--~A 147 (172)
T PRK05057 76 I-VLATGGGSVKSRETRNRLS----ARGV-VVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEE--IA 147 (172)
T ss_pred E-EEEcCCchhCCHHHHHHHH----hCCE-EEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh--hC
Confidence 2 2323221 123333333 2333 389999999999987432100 011111100 11 111 22433 26
Q ss_pred CeEEEcCCCcCHHHHHH-HHhhc
Q 024315 247 EVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 247 e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
+++|||+ ..+++++.. |.++|
T Consensus 148 d~~idt~-~~s~~ei~~~i~~~l 169 (172)
T PRK05057 148 DVTIRTD-DQSAKVVANQIIHML 169 (172)
T ss_pred CEEEECC-CCCHHHHHHHHHHHH
Confidence 7999995 778888887 87775
No 413
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.64 E-value=3e-07 Score=88.95 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=94.7
Q ss_pred eEEeeCceeec-------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee----cC--------
Q 024315 82 ILWHKNSVDKR-------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN----CR-------- 142 (269)
Q Consensus 82 ~~~~~~~v~~~-------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~----~~-------- 142 (269)
++++.+++..+ ++.++.+..|..+.|+||||||||+|++.|.++-+ ..+|.+..-.+. +.
T Consensus 434 i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~~~~lfflPQrPYm 512 (659)
T KOG0060|consen 434 IEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGGPKDLFFLPQRPYM 512 (659)
T ss_pred EEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-cCCCeEEecccCCCCceEEecCCCCc
Confidence 55665554444 45789999999999999999999999999999875 334444332222 11
Q ss_pred --cccccCCCCCh------------hhHHHHHHHHHHHHHHHHhCCcce---e---eccCChHHHHH-HHHHHhCCCCCc
Q 024315 143 --HGLNRDLSFKA------------EDRVENIRRIGEVAKLFADAGVIC---I---ACLISPYRKDR-DACRSMLPEGDF 201 (269)
Q Consensus 143 --~~l~~~~g~~~------------~~~~~~~~~l~~~a~~~~~~g~~~---i---v~~~~~~~~~r-~~ar~ll~~~~~ 201 (269)
-.|+..+-|.. ++..+.+. ..+..++....|-.. + .+.++++++|| ..||-+..+|++
T Consensus 513 t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le-~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~ 591 (659)
T KOG0060|consen 513 TLGTLRDQVIYPLKAEDMDSKSASDEDILRILE-NVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKF 591 (659)
T ss_pred cccchhheeeccCccccccccCCCHHHHHHHHH-HhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCce
Confidence 02333332321 11111111 123344454444332 2 24468888888 578888889999
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhcCcc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLAREGKV 230 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~g~~ 230 (269)
.++||.+..+.......+|+..|+-.+
T Consensus 592 --AiLDE~TSAv~~dvE~~~Yr~~r~~gi 618 (659)
T KOG0060|consen 592 --AILDECTSAVTEDVEGALYRKCREMGI 618 (659)
T ss_pred --EEeechhhhccHHHHHHHHHHHHHcCC
Confidence 899999999999998889998887665
No 414
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.63 E-value=4.3e-08 Score=76.11 Aligned_cols=46 Identities=30% Similarity=0.200 Sum_probs=39.6
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+.+..++.+++|++++|+||||||||||++++. +|.+.++|+++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~ 48 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNV 48 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHH
Confidence 3456678899999999999999999999999985 467889998875
No 415
>PRK08233 hypothetical protein; Provisional
Probab=98.61 E-value=4.4e-07 Score=75.80 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
++.+|+|.|++||||||+++.|++.+.. ...+.++...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~~ 39 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRYD 39 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCEE
Confidence 4678999999999999999999998842 3455666554
No 416
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.59 E-value=6.9e-08 Score=81.06 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=42.3
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.-.|..+..|+++=++||||||||||+..++|.+ +++|.|.++|.++.
T Consensus 16 ~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~ 63 (248)
T COG4138 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLE 63 (248)
T ss_pred cccccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchh
Confidence 3446677899999999999999999999999986 57899999999876
No 417
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.57 E-value=5.4e-07 Score=74.45 Aligned_cols=146 Identities=17% Similarity=0.274 Sum_probs=74.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHH-------HHHHHHHHHHHHH-hCCc
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-------NIRRIGEVAKLFA-DAGV 175 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~-------~~~~l~~~a~~~~-~~g~ 175 (269)
+|+|.|++||||||+++.|+..+.-+ +++.+++.+.+....+........ ....+......+. ..+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKN 76 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999877532 566554433222222333222110 0111111111121 2222
Q ss_pred ceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhH---HHH----------HhcCccccccccccccCC
Q 024315 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL---YKL----------AREGKVKGFTGIDDPYEP 242 (269)
Q Consensus 176 ~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l---~~~----------~r~g~~~~~~~i~~~~e~ 242 (269)
.++....... . +-..++ +.|++++|.+.+.+|..++. ... .+...+..+++.+ +..
T Consensus 77 ~Vi~g~~~~~------~--~~~~~d-~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~--~~~ 145 (171)
T TIGR02173 77 VVLESRLAGW------I--VREYAD-VKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGID--IDD 145 (171)
T ss_pred EEEEecccce------e--ecCCcC-EEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC--ccc
Confidence 2222211111 0 011123 34899999999988875541 000 0011111122222 234
Q ss_pred CCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 243 PLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 243 p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
|.+-|++|||+ .+++++ .. |.+.
T Consensus 146 ~~~ydl~i~t~-~~~~~~-~~~i~~~ 169 (171)
T TIGR02173 146 LSIYDLVINTS-NWDPNN-VDIILDA 169 (171)
T ss_pred cccccEEEECC-CCCHHH-HHHHHHH
Confidence 56678999995 888998 55 6553
No 418
>PRK13949 shikimate kinase; Provisional
Probab=98.56 E-value=3.8e-08 Score=82.48 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=72.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCcce
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGVIC 177 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~~~ 177 (269)
.|.|+|++||||||+++.|++.+.-+ +++-|.+... ..+.+..+.. +.++.+ .++...+....- .
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~-----~id~D~~i~~---~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~-~ 73 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLS-----FIDLDFFIEN---RFHKTVGDIFAERGEAVFRELERNMLHEVAEFED-V 73 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC-----eecccHHHHH---HHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCC-E
Confidence 48899999999999999999988533 5665544211 1121211110 111111 111121222221 2
Q ss_pred eeccCChH---HHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhh--HHHHHhcCcccc----c----cccccccCCCC
Q 024315 178 IACLISPY---RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG--LYKLAREGKVKG----F----TGIDDPYEPPL 244 (269)
Q Consensus 178 iv~~~~~~---~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~--l~~~~r~g~~~~----~----~~i~~~~e~p~ 244 (269)
+++.+.+. .+.++.+ .+.+++ ||++.|.+.+.+|.... ..........+. + ......|+.
T Consensus 74 vis~Ggg~~~~~~~~~~l----~~~~~v-i~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~-- 146 (169)
T PRK13949 74 VISTGGGAPCFFDNMELM----NASGTT-VYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQ-- 146 (169)
T ss_pred EEEcCCcccCCHHHHHHH----HhCCeE-EEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh--
Confidence 33333221 2223333 223343 89999999998886421 100010000000 0 111123444
Q ss_pred CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 245 NCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 245 ~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
++++||++ ..+++++.. |.+.|
T Consensus 147 -ad~~id~~-~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 147 -AKIIFNAD-KLEDESQIEQLVQRL 169 (169)
T ss_pred -CCEEEECC-CCCHHHHHHHHHHhC
Confidence 46999996 567777777 77654
No 419
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.55 E-value=4e-07 Score=82.65 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHH-HhCCccee
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF-ADAGVICI 178 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~-~~~g~~~i 178 (269)
...++++|+|++||||||+++.|+. .|...+++.+.. . +..+.+....- ....+...
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~------~g~~~~d~~~~~------------L----~~~l~~~~~~~~~~~~~av~ 61 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED------LGYYCVDNLPPS------------L----LPKLVELLAQSGGIRKVAVV 61 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH------cCCeEECCcCHH------------H----HHHHHHHHHhcCCCCCeEEE
Confidence 4567999999999999999999963 234566553321 1 11111111110 01223333
Q ss_pred eccCCh--HHHHHHHHHHhCCC-CCccEEEEeCChhHHHhcChhhH--HHHHhcCcc-ccccccccccCCC-CCCCeEEE
Q 024315 179 ACLISP--YRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGL--YKLAREGKV-KGFTGIDDPYEPP-LNCEVGVH 251 (269)
Q Consensus 179 v~~~~~--~~~~r~~ar~ll~~-~~~~~i~ld~p~~~l~~R~~k~l--~~~~r~g~~-~~~~~i~~~~e~p-~~~e~~id 251 (269)
++..+. .+..++.+..+... ..+..||+++|.+.+.+|..+.- ......... +.+....+.+++- ..++++||
T Consensus 62 iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivID 141 (288)
T PRK05416 62 IDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVID 141 (288)
T ss_pred EccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEE
Confidence 333322 12233344443333 23344899999999999964210 000111000 0011112222221 23789999
Q ss_pred cCCCcCHHHHHH-HHhhc
Q 024315 252 VWYRFELAETWR-ITKWL 268 (269)
Q Consensus 252 ~~~~~~~~~~~~-i~~~~ 268 (269)
|+ ..+++++.. |.+++
T Consensus 142 Ts-~ls~~el~e~I~~~l 158 (288)
T PRK05416 142 TS-ELSVHQLRERIRERF 158 (288)
T ss_pred CC-CCCHHHHHHHHHHHH
Confidence 95 777888777 77654
No 420
>PRK13947 shikimate kinase; Provisional
Probab=98.55 E-value=9.2e-07 Score=73.41 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=74.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCcce
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGVIC 177 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~~~ 177 (269)
.|.|+|++||||||+++.|+..|..+ +++.|...... .|.+..+.. ..++.. ..+...+...+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~-----~id~d~~~~~~---~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~v 74 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG-----FIDTDKEIEKM---TGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLV 74 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC-----EEECchhhhhh---cCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeE
Confidence 37899999999999999999998543 67777654322 233322111 111111 11122222222222
Q ss_pred eeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCccccccccc-------cccCCCCCC
Q 024315 178 IACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGKVKGFTGID-------DPYEPPLNC 246 (269)
Q Consensus 178 iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~~~~~~~i~-------~~~e~p~~~ 246 (269)
+ ..+.+ .......++ +..+ .||+++|.+.+.+|...+-.. ....... ...+. ..|+ .+
T Consensus 75 i-~~g~g~vl~~~~~~~l~----~~~~-vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~--~~~i~~~~~~r~~~y~---~a 143 (171)
T PRK13947 75 I-ATGGGVVLNPENVVQLR----KNGV-VICLKARPEVILRRVGKKKSRPLLMVGDP--EERIKELLKEREPFYD---FA 143 (171)
T ss_pred E-ECCCCCcCCHHHHHHHH----hCCE-EEEEECCHHHHHHHhcCCCCCCCCCCCCh--HHHHHHHHHHHHHHHH---hc
Confidence 3 22221 112222222 2222 489999999998886432100 0000000 01111 1222 35
Q ss_pred CeEEEcCCCcCHHHHHH-HHh-hc
Q 024315 247 EVGVHVWYRFELAETWR-ITK-WL 268 (269)
Q Consensus 247 e~~id~~~~~~~~~~~~-i~~-~~ 268 (269)
+++|||+ ..+++++.. |.+ ||
T Consensus 144 d~~Idt~-~~~~~~i~~~I~~~~~ 166 (171)
T PRK13947 144 DYTIDTG-DMTIDEVAEEIIKAYL 166 (171)
T ss_pred CEEEECC-CCCHHHHHHHHHHHHH
Confidence 8999984 788888888 777 65
No 421
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.54 E-value=1.7e-07 Score=89.78 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=42.1
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+.+.+++.+++|++++|+|+||||||||++ .+.+.++..+.|.++|.++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 3467889999999999999999999999999 45554443448999998886
No 422
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.52 E-value=1.8e-07 Score=89.90 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=86.7
Q ss_pred eEEeeCceeeccC------cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc----cCCCC
Q 024315 82 ILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLSF 151 (269)
Q Consensus 82 ~~~~~~~v~~~~r------~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~----~~~g~ 151 (269)
+.+.+..|.+.++ .+|-+..+..++++||||+|||||++.+.+.+. |..|.+.-.........+ -.+++
T Consensus 390 i~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H~~~~~y~Qh~~e~ldl 468 (614)
T KOG0927|consen 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSHNKLPRYNQHLAEQLDL 468 (614)
T ss_pred EEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccccccccchhhhhhhHhhcCc
Confidence 3444445544433 467889999999999999999999999999985 556666554443321111 11122
Q ss_pred ChhhH---HHH---HHHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315 152 KAEDR---VEN---IRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (269)
Q Consensus 152 ~~~~~---~~~---~~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k 219 (269)
..... .+. ..+..++-.++..+|+.. -+..++.+++.| ..++.++.+|.+ +++|+|++.++-..-.
T Consensus 469 ~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l--LlLDEPtnhLDi~tid 546 (614)
T KOG0927|consen 469 DKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL--LLLDEPTNHLDIETID 546 (614)
T ss_pred chhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE--EEecCCCcCCCchhHH
Confidence 21111 000 012233444555666632 123345555555 477778888888 8999999999877766
Q ss_pred hHHHHHh
Q 024315 220 GLYKLAR 226 (269)
Q Consensus 220 ~l~~~~r 226 (269)
.+.+.+.
T Consensus 547 ~laeaiN 553 (614)
T KOG0927|consen 547 ALAEAIN 553 (614)
T ss_pred HHHHHHh
Confidence 6665554
No 423
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.52 E-value=5.1e-07 Score=77.90 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=67.1
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHH----HhhccCCccEEEECCeecCcc-cccCCCCChhhH----------
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALS----QALHWRGKLTYILDGDNCRHG-LNRDLSFKAEDR---------- 156 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~----~~l~~~~~g~i~l~g~~~~~~-l~~~~g~~~~~~---------- 156 (269)
.+...+.+.+| +++|+|+||||||||+++|. +..+ ++.+.+..+.+.+... ....+++..+..
T Consensus 13 ~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 13 HERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred cCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 44555667777 99999999999999999996 4432 2223222111111110 000000000000
Q ss_pred HHHHHHH-----HHHHHHHHhCCcceeeccCChHHHHH-------HHHHHhCCCCCccEEEEeCChhHHHhcChh-hHHH
Q 024315 157 VENIRRI-----GEVAKLFADAGVICIACLISPYRKDR-------DACRSMLPEGDFIEVFMDVPLQVCEARDPK-GLYK 223 (269)
Q Consensus 157 ~~~~~~l-----~~~a~~~~~~g~~~iv~~~~~~~~~r-------~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k-~l~~ 223 (269)
...+..+ .++...+ ...+...+.+++++ ..+++++.++++ +++|+|+..++....+ .+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~i--lllDEP~~~LD~~~~~~~l~~ 163 (204)
T cd03240 91 LAILENVIFCHQGESNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGI--LALDEPTTNLDEENIEESLAE 163 (204)
T ss_pred hhHhhceeeechHHHHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCE--EEEcCCccccCHHHHHHHHHH
Confidence 0000000 0111111 11222344555553 467888888888 9999999999998888 7666
Q ss_pred HHh
Q 024315 224 LAR 226 (269)
Q Consensus 224 ~~r 226 (269)
.++
T Consensus 164 ~l~ 166 (204)
T cd03240 164 IIE 166 (204)
T ss_pred HHH
Confidence 554
No 424
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.51 E-value=1.3e-06 Score=81.04 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=33.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecC
Q 024315 104 VIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCR 142 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~ 142 (269)
+..|+|++||||||+++.|+..+. ..|....+++.|+.-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 357999999999999999998885 467778889998864
No 425
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.50 E-value=1e-07 Score=84.52 Aligned_cols=45 Identities=4% Similarity=0.028 Sum_probs=32.9
Q ss_pred cCChHHHHH-HHHHHhC----CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 181 LISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 181 ~~~~~~~~r-~~ar~ll----~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
..+.+++++ ..+++++ ..+++ +++|||+..++....+.+.+.+++
T Consensus 166 ~lS~G~~qr~~la~al~~~~~~~~~i--lllDEPt~~ld~~~~~~~~~~l~~ 215 (251)
T cd03273 166 ELSGGQRSLVALSLILALLLFKPAPM--YILDEVDAALDLSHTQNIGRMIKT 215 (251)
T ss_pred ccCHHHHHHHHHHHHHHHhhccCCCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 345566665 5666664 45677 899999999999888887766654
No 426
>PRK06761 hypothetical protein; Provisional
Probab=98.50 E-value=6.1e-07 Score=81.13 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCcc-EEEECCee-cCcccccCCCCChhhHHHHHHHHHHHHHHHHh----CCc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDN-CRHGLNRDLSFKAEDRVENIRRIGEVAKLFAD----AGV 175 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g-~i~l~g~~-~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~----~g~ 175 (269)
+.+++|.|++||||||+++.|...+...+-. .+..+++. ....+.....++..++..++++....+..+.. .|.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~ 82 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD 82 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 4689999999999999999999988644322 23445543 22234445568888888888887776654444 344
Q ss_pred ceeeccCChHHHHHHHHHH-hCCCCCccEEEEeCChhHHHhcChhh
Q 024315 176 ICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 176 ~~iv~~~~~~~~~r~~ar~-ll~~~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
.+++.+.......|+.++. ++......+++ +.|.+...+|..++
T Consensus 83 ~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~r 127 (282)
T PRK06761 83 YYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDR 127 (282)
T ss_pred eEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHH
Confidence 5566666655566666654 33333344466 99999998887554
No 427
>PRK14527 adenylate kinase; Provisional
Probab=98.49 E-value=5.3e-07 Score=76.68 Aligned_cols=30 Identities=40% Similarity=0.438 Sum_probs=26.4
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
...+|.+++++|++||||||+++.|+..+.
T Consensus 2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999998774
No 428
>PRK13946 shikimate kinase; Provisional
Probab=98.47 E-value=8.3e-07 Score=75.17 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=77.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGV 175 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~ 175 (269)
...|.++|.+||||||+++.|+..|.-+ ++|.|....... +.+..+.. ..++.+ .+....+...+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~-----~id~D~~~~~~~---g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~ 81 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLP-----FLDADTEIERAA---RMTIAEIFAAYGEPEFRDLERRVIARLLKGGP 81 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC-----eECcCHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence 4579999999999999999999988533 677775432211 22222211 111111 111222222332
Q ss_pred ceeeccCC--hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCc-cccccccccccC-CCCCCCeEE
Q 024315 176 ICIACLIS--PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGK-VKGFTGIDDPYE-PPLNCEVGV 250 (269)
Q Consensus 176 ~~iv~~~~--~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~-~~~~~~i~~~~e-~p~~~e~~i 250 (269)
.++...++ ..+..++.++. .. +.||++.|++.+.+|..++-.. ...... ...+..++...+ -...++++|
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~~----~~-~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i 156 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIAE----KG-ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTV 156 (184)
T ss_pred eEEECCCCCcCCHHHHHHHHc----CC-EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEE
Confidence 33332111 22334444432 22 3489999999998887543100 000000 011111111111 112368999
Q ss_pred EcCCCcCHHHHHH-HHhhc
Q 024315 251 HVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 251 d~~~~~~~~~~~~-i~~~~ 268 (269)
+++ ..+++++.. |.+++
T Consensus 157 ~~~-~~~~~~~~~~i~~~i 174 (184)
T PRK13946 157 ASR-DVPKEVMADEVIEAL 174 (184)
T ss_pred ECC-CCCHHHHHHHHHHHH
Confidence 984 788888887 66554
No 429
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.46 E-value=2.7e-06 Score=74.18 Aligned_cols=25 Identities=48% Similarity=0.612 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-+++|.||+||||||+++.|++.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998775
No 430
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.45 E-value=1.8e-07 Score=80.96 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+|++++|+|+||||||||+++|...+.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~ 53 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALY 53 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEe
Confidence 478999999999999999999996553
No 431
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.43 E-value=2.2e-06 Score=73.31 Aligned_cols=29 Identities=41% Similarity=0.531 Sum_probs=26.6
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++|++++|+||||||||||++.|++.++
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36899999999999999999999999874
No 432
>PRK14532 adenylate kinase; Provisional
Probab=98.42 E-value=7.1e-07 Score=75.47 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=25.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
.++|+|++||||||+++.|+..+. ...++-++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-----~~~is~~d 33 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-----MVQLSTGD 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-----CeEEeCcH
Confidence 378999999999999999998774 34555533
No 433
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.42 E-value=1e-06 Score=84.94 Aligned_cols=133 Identities=24% Similarity=0.326 Sum_probs=91.8
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHH---------
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRV--------- 157 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~--------- 157 (269)
..++||++++||+++|.|.-|||+|-+++.|.+.- ....|+|.++|..+.. .++..++|.+++|.
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 46789999999999999999999999999999944 5568999999997652 23334555555542
Q ss_pred --HHH-----HH-----------HHHHH-HHHHhCCc-----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 158 --ENI-----RR-----------IGEVA-KLFADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 158 --~~~-----~~-----------l~~~a-~~~~~~g~-----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
+++ .+ -.+.+ .......+ ...+..+|++.+|+ -.+|.+..++++ +++|+|+-.
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~v--LilDEPTRG 431 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV--LILDEPTRG 431 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCE--EEECCCCcC
Confidence 110 00 00111 11112222 12244456666666 588888889999 999999999
Q ss_pred HHhcChhhHHHHHhc
Q 024315 213 CEARDPKGLYKLARE 227 (269)
Q Consensus 213 l~~R~~k~l~~~~r~ 227 (269)
++--....+|+.+++
T Consensus 432 IDVGAK~eIy~li~~ 446 (500)
T COG1129 432 IDVGAKAEIYRLIRE 446 (500)
T ss_pred cccchHHHHHHHHHH
Confidence 998887778877663
No 434
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=98.42 E-value=1.6e-07 Score=72.23 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=44.4
Q ss_pred CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccc
Q 024315 12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLC 71 (269)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi 71 (269)
.|..|..|++|.|+|.++.|+. +|.+++.+|+|++|||.++. |+|+||+
T Consensus 53 ~~~~l~~n~~a~v~i~~~~pi~~d~~~~~~~~GrfiliD~~~~~-----------tva~G~i 103 (103)
T cd04095 53 AADTLELNDIGRVELSLSKPLAFDPYRENRATGSFILIDRLTNA-----------TVGAGMI 103 (103)
T ss_pred CCCEECCCCeEEEEEEeCCccEecchhhCCCcceEEEEECCCCc-----------EEEEEeC
Confidence 3456999999999999999998 99999999999999998886 8888875
No 435
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.40 E-value=2e-06 Score=78.93 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=82.3
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHH-----HHHHH--HH
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-----NIRRI--GE 165 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~-----~~~~l--~~ 165 (269)
.+....+.++..|+|+|++||||||+++.|+..+.-+ +++-|.... ...|++..+... .++.. ..
T Consensus 124 ~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~-----~id~D~~i~---~~~G~~i~ei~~~~G~~~fr~~e~~~ 195 (309)
T PRK08154 124 LGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVP-----FVELNREIE---REAGLSVSEIFALYGQEGYRRLERRA 195 (309)
T ss_pred HhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEeHHHHHH---HHhCCCHHHHHHHHCHHHHHHHHHHH
Confidence 3446778899999999999999999999999988533 444443321 112333332211 11111 11
Q ss_pred HHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHH--HHH-hcCccccccccc----c
Q 024315 166 VAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY--KLA-REGKVKGFTGID----D 238 (269)
Q Consensus 166 ~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~--~~~-r~g~~~~~~~i~----~ 238 (269)
+..++...+..++.. +.+.-........+.. .++.||+++|.+.+.+|..++.. ... .......+..++ .
T Consensus 196 l~~ll~~~~~~VI~~-Ggg~v~~~~~~~~l~~--~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~ 272 (309)
T PRK08154 196 LERLIAEHEEMVLAT-GGGIVSEPATFDLLLS--HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREP 272 (309)
T ss_pred HHHHHhhCCCEEEEC-CCchhCCHHHHHHHHh--CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 222233333333333 3221111111112222 24569999999999888743210 000 000011111111 2
Q ss_pred ccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 239 PYEPPLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 239 ~~e~p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
.|+ .++++|+|+ ..+++++.. |.++
T Consensus 273 ~y~---~ad~~I~t~-~~s~ee~~~~I~~~ 298 (309)
T PRK08154 273 LYA---RADAVVDTS-GLTVAQSLARLREL 298 (309)
T ss_pred HHH---hCCEEEECC-CCCHHHHHHHHHHH
Confidence 333 268999995 667887776 5554
No 436
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.38 E-value=1.3e-06 Score=84.03 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=42.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++++.+.++....+..+.+.+|+.++|+|+|||||||+++++.+...
T Consensus 79 ~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~ 126 (614)
T KOG0927|consen 79 ESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV 126 (614)
T ss_pred eeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC
Confidence 456666677888888999999999999999999999999999998774
No 437
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.33 E-value=2.3e-07 Score=79.61 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=27.0
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
++.+.+|++++|+|+|||||||+++.|....
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 5566788999999999999999999999544
No 438
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.32 E-value=4.4e-07 Score=75.49 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=74.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCcc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGVI 176 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~~ 176 (269)
..+.|+|++||||||+++.|+..+.-+ +++.|.+..... +....+.. +.++.. .+....+.. +.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~-----~~d~D~~~~~~~---g~~~~~~~~~~g~~~~~~~e~~~~~~~~~-~~- 72 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYR-----FVDTDQWLQSTS---NMTVAEIVEREGWAGFRARESAALEAVTA-PS- 72 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC-----EEEccHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHHHHHhcC-CC-
Confidence 358899999999999999999988533 677776643221 22211111 111111 111122222 22
Q ss_pred eeeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh---cC-c----ccc-ccccccccCCCC
Q 024315 177 CIACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR---EG-K----VKG-FTGIDDPYEPPL 244 (269)
Q Consensus 177 ~iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r---~g-~----~~~-~~~i~~~~e~p~ 244 (269)
.++..+.+ ....++.+ ....+ .+|++.|.+.+.+|..++.....| .+ . ... +......|...
T Consensus 73 ~vi~~ggg~vl~~~~~~~l----~~~~~-~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~- 146 (171)
T PRK03731 73 TVIATGGGIILTEENRHFM----RNNGI-VIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREV- 146 (171)
T ss_pred eEEECCCCccCCHHHHHHH----HhCCE-EEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHh-
Confidence 23333322 12333333 22333 489999999998887542110000 00 0 001 11111234332
Q ss_pred CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 245 NCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 245 ~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
..++||++ .++++++. |.++|
T Consensus 147 -a~~~Id~~--~~~e~v~~~i~~~l 168 (171)
T PRK03731 147 -AHHIIDAT--QPPSQVVSEILSAL 168 (171)
T ss_pred -CCEEEcCC--CCHHHHHHHHHHHH
Confidence 45889874 67888877 66665
No 439
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.28 E-value=4.9e-06 Score=67.53 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc
Q 024315 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (269)
Q Consensus 105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~ 143 (269)
|+|+|++||||||+++.|+..+..+ +++.+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~-----~~~~d~~~~ 35 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP-----FVDLDELIE 35 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC-----EEEchHHHH
Confidence 7899999999999999999988533 677776543
No 440
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.27 E-value=3.1e-05 Score=66.98 Aligned_cols=25 Identities=48% Similarity=0.597 Sum_probs=23.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-+|+|=||+||||||+++.|+..|.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg 29 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG 29 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC
Confidence 5789999999999999999999985
No 441
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.27 E-value=2.4e-06 Score=68.63 Aligned_cols=24 Identities=50% Similarity=0.628 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+|.|+|++||||||+++.|+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999875
No 442
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.26 E-value=3.4e-06 Score=70.77 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=56.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC-eecCcccccCCCCCh--hhHH--------HHHHHHHHHHHHHHh
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDLSFKA--EDRV--------ENIRRIGEVAKLFAD 172 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g-~~~~~~l~~~~g~~~--~~~~--------~~~~~l~~~a~~~~~ 172 (269)
+|+|+|++||||||+++.|+..+. .+.++- +-+++.+........ ++.. +....+ +...+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~-----~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--l~~~~~~ 73 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG-----FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKL--LKNAIQA 73 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-----CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHH--HHHHHhc
Confidence 478999999999999999999874 345553 444433321110000 0000 000000 0111111
Q ss_pred C-CcceeeccCChHHHHHHHHHHhCC---CCCccEEEEeCChhHHHhcChhh
Q 024315 173 A-GVICIACLISPYRKDRDACRSMLP---EGDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 173 ~-g~~~iv~~~~~~~~~r~~ar~ll~---~~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
. +...+++.......+...+.+++. .+++ .+++++|.+.+.+|..++
T Consensus 74 ~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~-~i~l~~~~~~~~~Rl~~R 124 (183)
T TIGR01359 74 DGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKF-VLFFDCPEEVMIKRLLKR 124 (183)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCE-EEEEECCHHHHHHHHhcC
Confidence 1 222333332222344444444443 3444 489999999999887554
No 443
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.23 E-value=1.2e-05 Score=68.97 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=32.5
Q ss_pred ccCChHHHHH-HHHHHh----CCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 180 CLISPYRKDR-DACRSM----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 180 ~~~~~~~~~r-~~ar~l----l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
...+.+++++ ..++.+ +.++++ +++|||+..++......+.+.++
T Consensus 108 ~~lS~G~k~r~~ia~al~~~~~~~p~i--lllDEP~~glD~~~~~~~~~~l~ 157 (198)
T cd03276 108 KTLSGGERSFSTVCLLLSLWEVMESPF--RCLDEFDVFMDMVNRKISTDLLV 157 (198)
T ss_pred cccChhHHHHHHHHHHHHHhcccCCCE--EEecCcccccCHHHHHHHHHHHH
Confidence 3445555655 566666 478888 99999999999888777665443
No 444
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.23 E-value=3.7e-06 Score=72.67 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=59.6
Q ss_pred eCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC---ccEEEECCeecCcccccCCCCChhhHHHHHHH
Q 024315 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162 (269)
Q Consensus 86 ~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~---~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~ 162 (269)
.+.+.+.||+++++..||+-+++|.||||||-+|+++.+...+.= ....+|+..++ +.+++.+|++.+.+
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idL-------L~L~Pr~RRk~ig~ 89 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDL-------LRLSPRERRKLVGH 89 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchh-------hcCChHHhhhhhcc
Confidence 367899999999999999999999999999999999999775320 11223333333 25777777776665
Q ss_pred HHHHHHHHHhCCc
Q 024315 163 IGEVAKLFADAGV 175 (269)
Q Consensus 163 l~~~a~~~~~~g~ 175 (269)
.++++|++...
T Consensus 90 --~isMIFQeP~s 100 (330)
T COG4170 90 --NVSMIFQEPQS 100 (330)
T ss_pred --chhhhhcCchh
Confidence 67777776543
No 445
>PRK01184 hypothetical protein; Provisional
Probab=98.23 E-value=2.1e-05 Score=66.20 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=54.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC-CeecCcccc-cCCCCChhhHHH----HHHH-----HHHHH--HHH
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLN-RDLSFKAEDRVE----NIRR-----IGEVA--KLF 170 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~-g~~~~~~l~-~~~g~~~~~~~~----~~~~-----l~~~a--~~~ 170 (269)
+++|+|++||||||+++ ++..+. ..+++ |+-+++.+. ..+........+ .... +.... .+.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g-----~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMG-----IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR 76 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcC-----CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 78999999999999987 444442 22444 555554331 111111111111 0001 00111 111
Q ss_pred HhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 171 ~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
...+..++++.. ....+.+.+++.+.. .+..|++++|.+.+.+|..
T Consensus 77 ~~~~~~vvidg~-r~~~e~~~~~~~~~~-~~~~i~v~~~~~~~~~Rl~ 122 (184)
T PRK01184 77 EKGDEVVVIDGV-RGDAEVEYFRKEFPE-DFILIAIHAPPEVRFERLK 122 (184)
T ss_pred hcCCCcEEEeCC-CCHHHHHHHHHhCCc-ccEEEEEECCHHHHHHHHH
Confidence 112233344433 233445566666653 3455899999999998864
No 446
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.23 E-value=1e-06 Score=75.59 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=27.3
Q ss_pred cCcceecCCC-eEEEEEcCCCChHHHHHHHHH
Q 024315 93 DRQQLLQQKG-CVIWITGLSGSGKSTLACALS 123 (269)
Q Consensus 93 ~r~sl~~~~g-~~i~l~G~sGsGKSTla~~L~ 123 (269)
...++.+.+| ++++|+||||||||||++.|.
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3457888898 589999999999999999988
No 447
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.22 E-value=1.4e-05 Score=66.88 Aligned_cols=26 Identities=50% Similarity=0.547 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999764
No 448
>PRK07261 topology modulation protein; Provisional
Probab=98.22 E-value=5.9e-06 Score=69.28 Aligned_cols=99 Identities=27% Similarity=0.269 Sum_probs=52.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~ 183 (269)
.|.|+|+||||||||++.|++.+..+ .+.+|...+.. ++......+....+ ...+.... .+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~---~i~~D~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP---VLHLDTLHFQP------NWQERDDDDMIADI---SNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC---eEecCCEEecc------ccccCCHHHHHHHH---HHHHhCCC--EEEcCcc
Confidence 57899999999999999999887433 33333322211 12222222222222 22232222 2332221
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (269)
Q Consensus 184 ~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l 221 (269)
........+. ..+. .+++|.|...|..|..++-
T Consensus 68 ~~~~~~~~l~----~ad~-vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 68 SWCLYEERMQ----EADQ-IIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred hhhhHHHHHH----HCCE-EEEEcCCHHHHHHHHHHHH
Confidence 1111111222 2223 3899999999999987664
No 449
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.22 E-value=2.4e-06 Score=73.47 Aligned_cols=30 Identities=33% Similarity=0.305 Sum_probs=26.1
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.+..|++++|+||||||||||++.|.+..
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 445568999999999999999999999765
No 450
>PRK08118 topology modulation protein; Reviewed
Probab=98.21 E-value=3.7e-06 Score=70.28 Aligned_cols=26 Identities=46% Similarity=0.553 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWR 129 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~ 129 (269)
.|.|+|++||||||+++.|+..+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999988643
No 451
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.21 E-value=2.6e-05 Score=79.26 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+|+|.||+||||||+++.|++.+.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~ 26 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG 26 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999999973
No 452
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.21 E-value=2.8e-06 Score=71.20 Aligned_cols=105 Identities=25% Similarity=0.343 Sum_probs=58.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHH-HHHHHHHhCCcc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIG-EVAKLFADAGVI 176 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~-~~a~~~~~~g~~ 176 (269)
..+.|+|+.||||||+.+.|++.|.-+ ++|.|.+-. ...+++..+.. ..++... ++...+....-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~-----F~D~D~~Ie---~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~- 73 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP-----FIDTDQEIE---KRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDN- 73 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC-----cccchHHHH---HHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCC-
Confidence 357899999999999999999999754 788776531 11133333221 1122221 22222222222
Q ss_pred eeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 177 ~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
.+++.+.+. -..+..++.+.... ..||+++|++.+.+|..
T Consensus 74 ~ViaTGGG~-v~~~enr~~l~~~g-~vv~L~~~~e~l~~Rl~ 113 (172)
T COG0703 74 AVIATGGGA-VLSEENRNLLKKRG-IVVYLDAPFETLYERLQ 113 (172)
T ss_pred eEEECCCcc-ccCHHHHHHHHhCC-eEEEEeCCHHHHHHHhc
Confidence 333333221 11222333444332 23899999999999986
No 453
>COG4639 Predicted kinase [General function prediction only]
Probab=98.21 E-value=3.4e-06 Score=69.34 Aligned_cols=107 Identities=25% Similarity=0.250 Sum_probs=64.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH----HHHHHHHHHHHHHHHhCCccee
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR----VENIRRIGEVAKLFADAGVICI 178 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~----~~~~~~l~~~a~~~~~~g~~~i 178 (269)
.+++++|++||||||+++....-. ..++-++++..+.. ..+.+.- ....+.+.+....-...|-..+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~~~-------~~lsld~~r~~lg~--~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~ti 73 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFLQN-------YVLSLDDLRLLLGV--SASKENSQKNDELVWDILYKQLEQRLRRGKFTI 73 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCCCc-------ceecHHHHHHHhhh--chhhhhccccHHHHHHHHHHHHHHHHHcCCeEE
Confidence 478999999999999998753211 24444444432210 0001100 0112222233333345677788
Q ss_pred eccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcCh
Q 024315 179 ACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 179 v~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~ 218 (269)
++.....+++|.....+..+- ....|++|.|.+.|.+|+.
T Consensus 74 idAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 74 IDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK 115 (168)
T ss_pred EEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence 888777778888777777654 3345899999999999973
No 454
>PRK03839 putative kinase; Provisional
Probab=98.20 E-value=3.4e-06 Score=70.85 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.|.|+|++||||||+++.|++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999885
No 455
>PRK06547 hypothetical protein; Provisional
Probab=98.20 E-value=4.8e-06 Score=70.07 Aligned_cols=39 Identities=33% Similarity=0.314 Sum_probs=29.6
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.....+|+|.|++||||||+++.|+..+. ...++.|+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~-----~~~~~~d~~~ 50 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG-----FQLVHLDDLY 50 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC-----CCeeccccee
Confidence 35566899999999999999999998763 2355555553
No 456
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.20 E-value=5.9e-06 Score=70.34 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~ 135 (269)
+|.+|+|.|+.||||||+++.|+..+...+.+.+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 47899999999999999999999988544444333
No 457
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.19 E-value=6.6e-06 Score=68.97 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
..+++|+|++||||||+++.|+..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999766
No 458
>PRK06217 hypothetical protein; Validated
Probab=98.19 E-value=1.6e-05 Score=67.14 Aligned_cols=34 Identities=47% Similarity=0.576 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.|+|+|.+||||||+++.|+..+.-+ +++.|++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-----~~~~D~~~ 36 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-----HLDTDDYF 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----EEEcCcee
Confidence 48999999999999999999988533 55555554
No 459
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.17 E-value=6e-06 Score=69.46 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=26.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l 136 (269)
+|+|.|++||||||+++.|++.+...|...+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 689999999999999999999996544444444
No 460
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.16 E-value=1.6e-05 Score=70.45 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=30.6
Q ss_pred ChHHHHH-HHHHHhCC----CCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 183 SPYRKDR-DACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 183 ~~~~~~r-~~ar~ll~----~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++++++ ..++.++. .+++ +++|+|+..++......+++.+++
T Consensus 157 S~G~k~rl~la~al~~~~~~~p~~--lllDEPt~~LD~~~~~~l~~~i~~ 204 (247)
T cd03275 157 SGGEKTMAALALLFAIHSYQPAPF--FVLDEVDAALDNTNVGKVASYIRE 204 (247)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCE--EEEecccccCCHHHHHHHHHHHHH
Confidence 4455555 56676654 3677 899999999999887777665554
No 461
>PLN02199 shikimate kinase
Probab=98.15 E-value=2.3e-06 Score=77.64 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=59.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHH-----HHHHH-HHHHHHHHhCC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-----NIRRI-GEVAKLFADAG 174 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~-----~~~~l-~~~a~~~~~~g 174 (269)
+|..|.|+|.+||||||+++.|+..+.-+ ++|-|.+.+.... +.+..+..+ .++.. .++...+....
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~-----fIDtD~lIe~~~~--G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~ 173 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYT-----FFDCDTLIEQAMN--GTSVAEIFVHHGENFFRGKETDALKKLSSRY 173 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEehHHHHHHHhc--CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC
Confidence 48899999999999999999999987533 7777765432211 222222111 11111 11111122212
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (269)
Q Consensus 175 ~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k 219 (269)
..+++.+.+. -.+...+.++.. .+ .||++.|++.+.+|..+
T Consensus 174 -~~VIStGGG~-V~~~~n~~~L~~-G~-vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 174 -QVVVSTGGGA-VIRPINWKYMHK-GI-SIWLDVPLEALAHRIAA 214 (303)
T ss_pred -CEEEECCCcc-cCCHHHHHHHhC-Ce-EEEEECCHHHHHHHHhh
Confidence 2344444322 222233334444 33 38999999999998753
No 462
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.12 E-value=1.5e-05 Score=76.79 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=89.7
Q ss_pred ceEEeeCceee------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE---------EECCeecCc--
Q 024315 81 NILWHKNSVDK------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRH-- 143 (269)
Q Consensus 81 ~~~~~~~~v~~------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i---------~l~g~~~~~-- 143 (269)
.+.+++.++-. ..+.+|.+.+|--+.|+||||||||+|.+.|.|+-+- -.|.. ++-..+...
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-y~g~L~~P~~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-YNGLLSIPRPNNIFYIPQRPYMSGG 559 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-cCCeeecCCCcceEeccCCCccCcC
Confidence 35555544332 2445899999999999999999999999999997642 11211 111111100
Q ss_pred cccc------------CCCCChhhHHHHHHHHHHHHHHHHhCCcceee----ccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 144 GLNR------------DLSFKAEDRVENIRRIGEVAKLFADAGVICIA----CLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 144 ~l~~------------~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv----~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.++. +-|+.+++....+.. .....+++..+-.+.+ +.++++++|| ..+|-....|++ ..+
T Consensus 560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~-v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky--alL 636 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDI-VHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY--ALL 636 (728)
T ss_pred cccceeecCCcHHHHHhcCCCHHHHHHHHHH-hhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch--hhh
Confidence 1111 225666665443332 2344556655533322 2346677777 577777788888 778
Q ss_pred eCChhHHHhcChhhHHHHHhcCcc
Q 024315 207 DVPLQVCEARDPKGLYKLAREGKV 230 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r~g~~ 230 (269)
|+-+..+.-.....+|+.+++..+
T Consensus 637 DEcTsAvsidvE~~i~~~ak~~gi 660 (728)
T KOG0064|consen 637 DECTSAVSIDVEGKIFQAAKDAGI 660 (728)
T ss_pred hhhhcccccchHHHHHHHHHhcCc
Confidence 887777776666778888877665
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.11 E-value=3.2e-06 Score=72.79 Aligned_cols=30 Identities=43% Similarity=0.513 Sum_probs=27.2
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
-++|++++|+|+||||||||++.|.+.+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 367999999999999999999999998853
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.10 E-value=3.2e-06 Score=71.71 Aligned_cols=43 Identities=28% Similarity=0.276 Sum_probs=36.9
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
.+.++.|+.++|+|+|||||||++++|.+.++ +..+.+.+.+.
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~ 61 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDT 61 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCc
Confidence 45678999999999999999999999999885 56778887653
No 465
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.09 E-value=2.5e-05 Score=81.25 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=33.2
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~ 123 (269)
+++.+......+.+++.++.|++++|+|+||||||||++.+.
T Consensus 615 L~v~~l~~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 615 LKLKGARENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred EEecCCccCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344433333467789999999999999999999999998763
No 466
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.09 E-value=7.4e-06 Score=80.67 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHH-HHHH-HHHhCC
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIG-EVAK-LFADAG 174 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~-~~a~-~~~~~g 174 (269)
-..+.|+|.+||||||+.+.|++.|.-+ ++|-|..-. ...+.+..+.. +.++.+. +... +....
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~-----fiD~D~~ie---~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~- 76 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLP-----FADADVEIE---REIGMSIPSYFEEYGEPAFREVEADVVADMLEDF- 76 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCC-----EEEchHHHH---HHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3468899999999999999999999644 777775421 11244433321 1122221 1111 22122
Q ss_pred cceeeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhH-HHHHhc---Cccccccccc-cccCCCCCC
Q 024315 175 VICIACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL-YKLARE---GKVKGFTGID-DPYEPPLNC 246 (269)
Q Consensus 175 ~~~iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l-~~~~r~---g~~~~~~~i~-~~~e~p~~~ 246 (269)
..+++.+.+ ..+.+..+.+.+.+..+ .||++.|++.+.+|....- ...... .++..+...+ ..|+. .+
T Consensus 77 -~~VIs~GGG~v~~~~n~~~L~~~~~~~g~-vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~--~A 152 (542)
T PRK14021 77 -DGIFSLGGGAPMTPSTQHALASYIAHGGR-VVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQ--VA 152 (542)
T ss_pred -CeEEECCCchhCCHHHHHHHHHHHhcCCE-EEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHh--hC
Confidence 234444332 23455555555555443 3899999999999863210 000100 0111122222 23432 37
Q ss_pred CeEEEcCCCcCHHHHHH-HHhhc
Q 024315 247 EVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 247 e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
+++|+|+ ..+++++.. |.+.+
T Consensus 153 d~~i~~~-~~~~~~~~~~i~~~~ 174 (542)
T PRK14021 153 NVHVHTR-GLTPQAAAKKLIDMV 174 (542)
T ss_pred CEEEECC-CCCHHHHHHHHHHHH
Confidence 8999985 667777766 65543
No 467
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.8e-05 Score=74.91 Aligned_cols=123 Identities=23% Similarity=0.198 Sum_probs=70.9
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH----------HHHHHH
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR----------VENIRR 162 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~----------~~~~~~ 162 (269)
...+|-+.--..|+|+||||.|||||++.|.+.|. |..|..+-+.. ++ +|+-.+.. .+.+.+
T Consensus 604 kkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~RKnhr-L~------iG~FdQh~~E~L~~Eetp~EyLqr 675 (807)
T KOG0066|consen 604 KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELRKNHR-LR------IGWFDQHANEALNGEETPVEYLQR 675 (807)
T ss_pred hcccccccccceeEEECCCCccHHHHHHHHhcCCC-CCcchhhccce-ee------eechhhhhHHhhccccCHHHHHHH
Confidence 44567777788899999999999999999999994 54444332211 11 11111100 111111
Q ss_pred H----HHHH-HHHHhCCc------ceeeccCChHHHHHH-HHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 163 I----GEVA-KLFADAGV------ICIACLISPYRKDRD-ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 163 l----~~~a-~~~~~~g~------~~iv~~~~~~~~~r~-~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
. .+.+ ..+..+|+ +.+- .++++++.|- .+.-.+..+++ +++|+|+..++-.....+..+++
T Consensus 676 ~FNlpyq~ARK~LG~fGL~sHAHTikik-dLSGGQKaRValaeLal~~PDv--lILDEPTNNLDIESIDALaEAIn 748 (807)
T KOG0066|consen 676 KFNLPYQEARKQLGTFGLASHAHTIKIK-DLSGGQKARVALAELALGGPDV--LILDEPTNNLDIESIDALAEAIN 748 (807)
T ss_pred hcCCChHHHHHHhhhhhhhhccceEeee-ecCCcchHHHHHHHHhcCCCCE--EEecCCCCCcchhhHHHHHHHHH
Confidence 1 0111 11222222 2233 4456666664 44445666777 89999999998777666666655
No 468
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.07 E-value=1.7e-05 Score=75.33 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=67.2
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHHHHHHHH-----HHHH
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRI-----GEVA 167 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~~~~~~l-----~~~a 167 (269)
.+..||+++++||||-||||+++.|+|.+. |.+|. ..++.- -+..+..-+.++.......- ....
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ik-Pdeg~----~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ 437 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGS----EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKT 437 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhcccc-CCCCC----CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHH
Confidence 456789999999999999999999999995 44443 111210 11111111122221111110 0011
Q ss_pred HHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315 168 KLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 168 ~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
.++....+.. -+..+++++-|| .++.++..++++ -++|+|.+.|+-..+-...+.+
T Consensus 438 ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl--YllDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 438 EIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL--YLLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred hhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE--EEecCchhhccHHHHHHHHHHH
Confidence 1122222211 245567777777 577777777777 6889999998755443333333
No 469
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.06 E-value=1.4e-05 Score=71.90 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=35.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
..++|+|+||||||||++.|++.+ .++.|.+.++|.++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEee
Confidence 678999999999999999999988 477999999998875
No 470
>PRK14530 adenylate kinase; Provisional
Probab=98.06 E-value=4e-05 Score=66.37 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+..|+|+|++||||||+++.|++.+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44789999999999999999999884
No 471
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.06 E-value=1.3e-05 Score=75.39 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=81.3
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-------CCccEEEECCeecCcccccCC--CCChhhHHHH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-------RGKLTYILDGDNCRHGLNRDL--SFKAEDRVEN 159 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-------~~~g~i~l~g~~~~~~l~~~~--g~~~~~~~~~ 159 (269)
....+++++.+++|++++++|.|||||||+++.++|.... |.+|.+-+-.+.+...+-..+ .+......+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 3345778999999999999999999999999999998753 345666655444332221111 2222222222
Q ss_pred HHH----HHHHHHHHHhCCcceeec------cCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh----hhHHHH
Q 024315 160 IRR----IGEVAKLFADAGVICIAC------LISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP----KGLYKL 224 (269)
Q Consensus 160 ~~~----l~~~a~~~~~~g~~~iv~------~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~----k~l~~~ 224 (269)
+.. +.....++..+|+.+-+. .++.+++.| .+++.+.+.+++ +..|+=-+.+++-.. +.+.+.
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~--~~iDEF~AhLD~~TA~rVArkisel 553 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNV--LLIDEFAAHLDELTAVRVARKISEL 553 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCc--EEhhhhhhhcCHHHHHHHHHHHHHH
Confidence 211 122345566667654322 124445555 566666666677 566666555554443 334455
Q ss_pred HhcCcc
Q 024315 225 AREGKV 230 (269)
Q Consensus 225 ~r~g~~ 230 (269)
+|+..+
T Consensus 554 aRe~gi 559 (593)
T COG2401 554 AREAGI 559 (593)
T ss_pred HHHhCC
Confidence 665554
No 472
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=98.04 E-value=3.3e-06 Score=64.83 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=41.5
Q ss_pred CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccc
Q 024315 12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLC 71 (269)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi 71 (269)
.|..|..||+|.|+|.++.|++ +|.+++.+|+|+++|. |. |+|+||+
T Consensus 56 ~~~~l~~n~~a~v~l~~~~pi~~e~~~~~~~lgrf~lrd~--~~-----------Tva~G~v 104 (104)
T cd03705 56 NPKFLKSGDAAIVKIVPQKPLVVETFSEYPPLGRFAVRDM--GQ-----------TVAVGIV 104 (104)
T ss_pred CcCccCCCCEEEEEEEECCeeEEEEcccCCCccCEEEEeC--CC-----------EEEEEEC
Confidence 3456899999999999999998 9999999999999983 54 8999985
No 473
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.03 E-value=7.2e-06 Score=67.99 Aligned_cols=105 Identities=21% Similarity=0.130 Sum_probs=58.3
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCC-hhhHHHHHHHHHHHHHHHHhCC
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK-AEDRVENIRRIGEVAKLFADAG 174 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~-~~~~~~~~~~l~~~a~~~~~~g 174 (269)
+....++.++.|+|||||||||+++++.-.+........+ ..... .++. +......
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~--~~~~~------~g~~~~~~~~~~--------------- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR--RSGVK------AGCIVAAVSAEL--------------- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc--cCccc------CCCcceeeEEEE---------------
Confidence 3444556799999999999999999987666432211111 11111 0110 1000000
Q ss_pred cceeeccCChHHHHH-HHHHHhCC----CCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 175 VICIACLISPYRKDR-DACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 175 ~~~iv~~~~~~~~~r-~~ar~ll~----~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+..... .+.+++++ ..++.+.. .+++ +++|||...++......+.....
T Consensus 72 i~~~~~-lS~G~~~~~~la~~L~~~~~~~~~l--lllDEp~~gld~~~~~~l~~~l~ 125 (162)
T cd03227 72 IFTRLQ-LSGGEKELSALALILALASLKPRPL--YILDEIDRGLDPRDGQALAEAIL 125 (162)
T ss_pred ehheee-ccccHHHHHHHHHHHHhcCCCCCCE--EEEeCCCCCCCHHHHHHHHHHHH
Confidence 111111 23334444 45555543 4566 89999999999988777655443
No 474
>PRK13808 adenylate kinase; Provisional
Probab=98.02 E-value=1.2e-05 Score=74.20 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.|+|+||+||||||+++.|+..+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378899999999999999999874
No 475
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.00 E-value=3.2e-05 Score=66.23 Aligned_cols=122 Identities=24% Similarity=0.200 Sum_probs=59.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCC--------CCChhhHHHHHHHHHHHHHHHH
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--------SFKAEDRVENIRRIGEVAKLFA 171 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~--------g~~~~~~~~~~~~l~~~a~~~~ 171 (269)
+.+.++.+.|+|||||||++..+...+. ..+.+.++.|.++..+-... ...............++.....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~ 90 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAI 90 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988763 46788999999874321000 0000000111111122222233
Q ss_pred hCCcceeec--cCChHHHHHHHHHHhCCCC-CccEEEEeCChhHHHhcChhhHHHH
Q 024315 172 DAGVICIAC--LISPYRKDRDACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 172 ~~g~~~iv~--~~~~~~~~r~~ar~ll~~~-~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
..+...++. +..+. .-+..++.+-... .+..+++.+|.+....|..++..+.
T Consensus 91 ~~~~nii~E~tl~~~~-~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~ 145 (199)
T PF06414_consen 91 ENRYNIIFEGTLSNPS-KLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEG 145 (199)
T ss_dssp HCT--EEEE--TTSSH-HHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHH
T ss_pred HcCCCEEEecCCCChh-HHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHcc
Confidence 444444433 33332 2222333332222 3444688999988888876665433
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.00 E-value=3.6e-05 Score=70.93 Aligned_cols=43 Identities=33% Similarity=0.508 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+|.+++|+||||+||||++..|++.+...+..+.+++.|..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 5789999999999999999999999986554445555555433
No 477
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.00 E-value=2.5e-05 Score=66.09 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTY 134 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i 134 (269)
+|.+|+|.|+.||||||+++.|+..+...|...+
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3789999999999999999999999865443333
No 478
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.99 E-value=3.1e-05 Score=66.62 Aligned_cols=42 Identities=24% Similarity=0.443 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN 146 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~ 146 (269)
.+.+++++|.+||||||+++.|+..+.. ...+.||-+++.++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~----~~~~~~D~~r~~~r 43 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI----DIVLSGDYLREFLR 43 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC----eEEehhHHHHHHHH
Confidence 4678999999999999999999998732 35678887765444
No 479
>PRK00625 shikimate kinase; Provisional
Probab=97.97 E-value=2.1e-05 Score=66.19 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=26.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.|.|+|.+||||||+++.|+..+.-+ ++|-|.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~-----~id~D~~ 34 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLP-----FFDTDDL 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----EEEhhHH
Confidence 47899999999999999999988533 5666654
No 480
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.96 E-value=4.5e-05 Score=66.24 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHH-----hCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 182 ISPYRKDRDACRS-----MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 182 ~~~~~~~r~~ar~-----ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.+.+++++..+.. ++.++++ +++|+|+..++....+.+++.++
T Consensus 127 LS~G~~q~~~i~~~la~~~~~~p~l--lllDEP~~~LD~~~~~~i~~~l~ 174 (213)
T cd03277 127 QSGGERSVSTMLYLLSLQELTRCPF--RVVDEINQGMDPTNERKVFDMLV 174 (213)
T ss_pred ccccHHHHHHHHHHHHHHhccCCCE--EEEecccccCCHHHHHHHHHHHH
Confidence 3445555543332 2567788 89999999999988888766554
No 481
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.95 E-value=5.9e-05 Score=63.58 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhc
Q 024315 105 IWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 105 i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
|+|+|++||||||+++.|+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999763
No 482
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.94 E-value=8.5e-05 Score=65.30 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=31.5
Q ss_pred ecCCCeEEEEEcCCCChHHHHH-HHHHHhhccCCccEEEECCe
Q 024315 98 LQQKGCVIWITGLSGSGKSTLA-CALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla-~~L~~~l~~~~~g~i~l~g~ 139 (269)
-+++|+++.|.|+|||||||++ +.+.+.+ .++...+++..+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e 61 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQ 61 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCC
Confidence 3688999999999999999996 6666655 456666666643
No 483
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.93 E-value=0.00013 Score=64.04 Aligned_cols=26 Identities=46% Similarity=0.558 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+|+|.|++||||||+++.|++.+.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998884
No 484
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.93 E-value=0.00015 Score=60.00 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=92.1
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc-----ccCCCCChh----------------hHH
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAE----------------DRV 157 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l-----~~~~g~~~~----------------~~~ 157 (269)
..+|.++.|-|.+-||||+++.++......+ -..++-|.....+ ....+|+-. -..
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~p---wmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~ 96 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEP---WMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL 96 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhcc---hhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence 4689999999999999999999998865432 1122222111110 000111110 000
Q ss_pred H-HHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccc-c
Q 024315 158 E-NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT-G 235 (269)
Q Consensus 158 ~-~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~-~ 235 (269)
+ .......-...+.+.|..++.+...-.+...--+...+...+++.|-+.+|.++++.|. ..+.++..++. +
T Consensus 97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re------~rr~dR~pG~~rg 170 (205)
T COG3896 97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRE------LRRGDRHPGWNRG 170 (205)
T ss_pred HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHH------hhcCCcCcchhhh
Confidence 1 11111122234566776666655433333333333344545676688899999999886 33455555543 4
Q ss_pred cccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 236 IDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 236 i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
....-+.|...|+.+||+ -+++.||.. |-|-
T Consensus 171 ~~r~vHa~~~YDlevDTS-~~tp~EcAr~i~~r 202 (205)
T COG3896 171 SARAVHADAEYDLEVDTS-ATTPHECAREIHER 202 (205)
T ss_pred hHHHhcCCcceeeeeccc-CCCHHHHHHHHHHH
Confidence 445567888889999996 667888888 6553
No 485
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.92 E-value=1.5e-05 Score=68.54 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
+++.+|+|+|+||||||||++.|.+.+. +.....++.|+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence 5789999999999999999999999883 223445666554
No 486
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.90 E-value=5.1e-05 Score=65.43 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=55.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCccEEEECC-eecCcccccCC-------------CCChhhHHHHHHHHHHHHHHH
Q 024315 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDL-------------SFKAEDRVENIRRIGEVAKLF 170 (269)
Q Consensus 105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g-~~~~~~l~~~~-------------g~~~~~~~~~~~~l~~~a~~~ 170 (269)
|+|+|++||||||+++.|+..+.- ..++- +-++..+.... .+.+.+. +.. -+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~-----~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~---~~~--l~~~~i 71 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL-----PHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEI---VNQ--LVKERL 71 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-----CeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHH---HHH--HHHHHH
Confidence 679999999999999999987742 23443 33333222110 1111111 001 011111
Q ss_pred Hh---CCcceeeccCChHHHHHHHHHHhCC-CCCccEEEEeCChhHHHhcChhh
Q 024315 171 AD---AGVICIACLISPYRKDRDACRSMLP-EGDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 171 ~~---~g~~~iv~~~~~~~~~r~~ar~ll~-~~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
.. .+...+++.......+.+.+.+.+. .+.+ .|++++|.+.+.+|...+
T Consensus 72 ~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~-vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 72 TQNQDNENGFILDGFPRTLSQAEALDALLKEKIDA-VIELDVPDEELVERLSGR 124 (210)
T ss_pred hcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCE-EEEEECCHHHHHHHHHCC
Confidence 11 1122233322223344555666555 3443 489999999999887655
No 487
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.88 E-value=8.9e-06 Score=70.28 Aligned_cols=36 Identities=25% Similarity=0.127 Sum_probs=31.3
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.....++....|++++|+||||+||||+++.+.+..
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456667888899999999999999999999998654
No 488
>PRK02496 adk adenylate kinase; Provisional
Probab=97.86 E-value=6.7e-05 Score=63.17 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++|+|++||||||+++.|++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 489
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.86 E-value=1.2e-05 Score=62.65 Aligned_cols=32 Identities=47% Similarity=0.584 Sum_probs=25.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
+|+|+|++||||||+++.|+..+. ...++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecc
Confidence 588999999999999999999874 23455555
No 490
>PRK14531 adenylate kinase; Provisional
Probab=97.86 E-value=9.3e-05 Score=62.49 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++++|++||||||+++.|+..+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999874
No 491
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=97.85 E-value=1.1e-05 Score=62.19 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=42.1
Q ss_pred CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhccccccccccc
Q 024315 13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQ 72 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~ 72 (269)
|..|..||+|.|+|.++.|++ +|.+++.+|+|++ |-++. |+|+|||.
T Consensus 57 ~~~l~~~~~a~v~l~~~~pi~~e~~~~~~~~Grfil--r~~~~-----------Tva~G~I~ 105 (107)
T cd04093 57 PRCLTKGQTAIVEIELERPIPLELFKDNKELGRVVL--RRDGE-----------TIAAGLVT 105 (107)
T ss_pred CcCcCCCCEEEEEEEECCeEEEEEcccCCCcceEEE--EcCCC-----------EEEEEEEE
Confidence 456999999999999999988 9999999999999 76665 99999985
No 492
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.84 E-value=8.1e-05 Score=81.38 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=33.3
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHH
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~ 120 (269)
+.+.+......+.+++.++.|++++|+|+||||||||++
T Consensus 601 L~l~~~~~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 601 LTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred EEEeccccCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 455555555578889999999999999999999999999
No 493
>PLN02200 adenylate kinase family protein
Probab=97.84 E-value=0.00014 Score=64.07 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=26.5
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+....+.+++|+|++||||||+++.|+..+.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455678899999999999999999998774
No 494
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.83 E-value=1.8e-05 Score=67.45 Aligned_cols=37 Identities=35% Similarity=0.426 Sum_probs=28.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+++|+|+|||||||+++.|.+.+. +.....+..|+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~--~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CCCeEEEEecccc
Confidence 479999999999999999999872 2345566666544
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.82 E-value=2.2e-05 Score=54.88 Aligned_cols=33 Identities=42% Similarity=0.495 Sum_probs=26.6
Q ss_pred cceecC-CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 95 QQLLQQ-KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 95 ~sl~~~-~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+.+. .|.++.|+|+|||||||++.++.-.|.
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 344444 356899999999999999999988775
No 496
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.81 E-value=2.6e-05 Score=68.31 Aligned_cols=31 Identities=39% Similarity=0.469 Sum_probs=27.7
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR 129 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~ 129 (269)
..++.+++|.|+||||||||++.|.+.++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3568899999999999999999999999754
No 497
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.80 E-value=3.8e-05 Score=59.46 Aligned_cols=42 Identities=43% Similarity=0.527 Sum_probs=33.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
++..+.|+||+|+||||+++.|+..+.....+.+.++.+...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 356889999999999999999999886543367788776654
No 498
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.80 E-value=2e-05 Score=68.78 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+++|.|+|||||||+++.|.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999999985
No 499
>PRK06696 uridine kinase; Validated
Probab=97.79 E-value=3e-05 Score=67.65 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
...-+|+|.|++||||||+++.|+..|...+...+.+..|+..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4567999999999999999999999996555456666666654
No 500
>PRK13974 thymidylate kinase; Provisional
Probab=97.78 E-value=0.0001 Score=63.84 Aligned_cols=29 Identities=38% Similarity=0.446 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWR 129 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~ 129 (269)
+|++++|.|+.||||||+++.|.+.+...
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~ 30 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSS 30 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999999998643
Done!