Query 024315
Match_columns 269
No_of_seqs 277 out of 2955
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uie_A Adenylyl-sulfate kinase 100.0 2.2E-27 7.4E-32 201.6 16.4 189 80-268 3-192 (200)
2 1m8p_A Sulfate adenylyltransfe 99.9 9.2E-25 3.2E-29 213.3 11.0 227 34-268 332-564 (573)
3 3cr8_A Sulfate adenylyltranfer 99.9 1.7E-24 5.7E-29 210.4 9.3 226 34-268 305-537 (552)
4 1x6v_B Bifunctional 3'-phospho 99.9 3.9E-21 1.3E-25 188.7 15.7 190 78-268 24-220 (630)
5 2gks_A Bifunctional SAT/APS ki 99.8 4.8E-21 1.6E-25 186.1 13.0 227 34-268 306-538 (546)
6 1m7g_A Adenylylsulfate kinase; 99.8 3.8E-19 1.3E-23 151.8 13.8 187 81-268 4-200 (211)
7 2yvu_A Probable adenylyl-sulfa 99.8 3.3E-18 1.1E-22 142.8 15.4 172 96-268 7-181 (186)
8 2pez_A Bifunctional 3'-phospho 99.8 1.2E-17 4E-22 138.6 16.9 168 100-268 3-173 (179)
9 3fvq_A Fe(3+) IONS import ATP- 99.7 1.4E-16 4.7E-21 147.1 11.0 141 80-223 8-179 (359)
10 3rlf_A Maltose/maltodextrin im 99.7 1.8E-16 6.1E-21 147.4 9.6 143 80-225 7-176 (381)
11 1z47_A CYSA, putative ABC-tran 99.7 3.1E-16 1.1E-20 144.7 10.7 153 65-226 9-189 (355)
12 2olj_A Amino acid ABC transpor 99.7 2.2E-16 7.6E-21 140.1 9.2 144 80-226 28-203 (263)
13 1sgw_A Putative ABC transporte 99.6 5.6E-16 1.9E-20 133.5 10.2 142 80-226 14-177 (214)
14 1b0u_A Histidine permease; ABC 99.6 3.4E-16 1.2E-20 138.7 8.2 144 80-226 10-197 (262)
15 3gfo_A Cobalt import ATP-bindi 99.6 2.6E-16 8.8E-21 140.5 7.1 144 80-226 11-187 (275)
16 2pcj_A ABC transporter, lipopr 99.6 6.6E-16 2.2E-20 133.7 9.3 144 80-226 8-184 (224)
17 1vpl_A ABC transporter, ATP-bi 99.6 9.3E-16 3.2E-20 135.5 10.5 144 80-226 19-190 (256)
18 2it1_A 362AA long hypothetical 99.6 9.8E-16 3.3E-20 141.7 11.0 144 80-226 7-177 (362)
19 3tui_C Methionine import ATP-b 99.6 7.1E-16 2.4E-20 142.6 9.9 144 80-226 28-207 (366)
20 2yyz_A Sugar ABC transporter, 99.6 7.5E-16 2.6E-20 142.3 10.0 143 80-225 7-176 (359)
21 1oxx_K GLCV, glucose, ABC tran 99.6 5.8E-16 2E-20 142.8 9.2 144 80-226 7-184 (353)
22 3tif_A Uncharacterized ABC tra 99.6 7E-16 2.4E-20 134.5 9.0 143 81-226 6-189 (235)
23 1g29_1 MALK, maltose transport 99.6 9.7E-16 3.3E-20 142.3 10.3 143 80-225 7-182 (372)
24 1v43_A Sugar-binding transport 99.6 9.5E-16 3.2E-20 142.3 9.9 144 80-226 15-185 (372)
25 1ji0_A ABC transporter; ATP bi 99.6 8.5E-16 2.9E-20 134.4 9.0 144 80-226 10-183 (240)
26 2ihy_A ABC transporter, ATP-bi 99.6 7.2E-16 2.5E-20 137.9 8.2 144 80-226 25-205 (279)
27 3d31_A Sulfate/molybdate ABC t 99.6 1.1E-15 3.7E-20 140.7 9.6 143 80-226 5-171 (348)
28 1g6h_A High-affinity branched- 99.6 1.1E-15 3.9E-20 134.9 9.2 144 80-226 11-197 (257)
29 4g1u_C Hemin import ATP-bindin 99.6 1.6E-15 5.3E-20 134.8 9.8 144 80-226 15-191 (266)
30 3nh6_A ATP-binding cassette SU 99.6 5.2E-16 1.8E-20 140.5 5.5 144 80-226 57-234 (306)
31 2onk_A Molybdate/tungstate ABC 99.6 5.7E-15 2E-19 129.2 11.4 141 80-226 5-170 (240)
32 1mv5_A LMRA, multidrug resista 99.6 9.6E-16 3.3E-20 134.2 6.4 143 81-226 6-183 (243)
33 2yz2_A Putative ABC transporte 99.6 4.5E-15 1.5E-19 131.7 10.5 144 80-226 6-182 (266)
34 2ixe_A Antigen peptide transpo 99.6 2E-15 6.9E-20 134.4 7.8 145 80-227 20-201 (271)
35 4eun_A Thermoresistant glucoki 99.6 1.6E-14 5.4E-19 122.0 12.6 157 97-268 24-191 (200)
36 2ff7_A Alpha-hemolysin translo 99.6 7.6E-15 2.6E-19 128.9 9.6 143 81-226 12-189 (247)
37 2d2e_A SUFC protein; ABC-ATPas 99.6 8.5E-15 2.9E-19 128.7 9.7 146 80-227 7-188 (250)
38 2pjz_A Hypothetical protein ST 99.6 1.8E-14 6.2E-19 127.7 11.8 142 81-227 6-173 (263)
39 3gd7_A Fusion complex of cysti 99.5 3.3E-15 1.1E-19 139.5 5.9 144 80-227 23-200 (390)
40 2zu0_C Probable ATP-dependent 99.5 9.4E-15 3.2E-19 129.7 8.6 146 80-227 24-209 (267)
41 2ghi_A Transport protein; mult 99.5 8.3E-15 2.8E-19 129.6 6.9 143 80-226 21-199 (260)
42 3b5x_A Lipid A export ATP-bind 99.5 2.1E-14 7.1E-19 140.4 8.7 145 80-227 345-525 (582)
43 2cbz_A Multidrug resistance-as 99.5 4.8E-15 1.6E-19 129.4 3.4 143 80-226 7-171 (237)
44 2pze_A Cystic fibrosis transme 99.5 5.2E-14 1.8E-18 122.1 9.2 139 80-224 10-172 (229)
45 1knq_A Gluconate kinase; ALFA/ 99.5 1.4E-13 4.8E-18 113.2 11.3 154 100-268 6-171 (175)
46 2nq2_C Hypothetical ABC transp 99.5 3.6E-14 1.2E-18 125.1 7.8 141 80-226 8-172 (253)
47 2qi9_C Vitamin B12 import ATP- 99.5 1.2E-14 4.1E-19 127.9 4.1 133 90-226 14-177 (249)
48 1qhx_A CPT, protein (chloramph 99.5 3.9E-13 1.3E-17 110.5 12.8 158 101-268 2-176 (178)
49 3b60_A Lipid A export ATP-bind 99.5 2.3E-14 7.8E-19 140.0 5.1 143 81-226 346-524 (582)
50 2yl4_A ATP-binding cassette SU 99.4 2.9E-14 1E-18 139.6 4.4 133 91-226 359-527 (595)
51 4a82_A Cystic fibrosis transme 99.4 3.7E-14 1.3E-18 138.5 4.4 133 91-226 356-521 (578)
52 3qf4_A ABC transporter, ATP-bi 99.4 7.3E-14 2.5E-18 136.7 5.5 133 91-226 358-523 (587)
53 4f4c_A Multidrug resistance pr 99.4 8.4E-14 2.9E-18 147.3 5.6 145 80-227 1075-1262(1321)
54 1g8f_A Sulfate adenylyltransfe 99.4 9.6E-14 3.3E-18 133.5 5.2 167 34-268 330-503 (511)
55 3qf4_B Uncharacterized ABC tra 99.4 8.7E-14 3E-18 136.4 3.6 133 91-226 370-535 (598)
56 4f4c_A Multidrug resistance pr 99.4 4.5E-13 1.5E-17 141.8 8.4 142 81-225 415-597 (1321)
57 3t61_A Gluconokinase; PSI-biol 99.4 4.8E-12 1.6E-16 106.5 11.9 151 100-268 16-177 (202)
58 2bbs_A Cystic fibrosis transme 99.3 1.6E-12 5.4E-17 116.8 7.1 130 90-224 52-201 (290)
59 3a4m_A L-seryl-tRNA(SEC) kinas 99.3 1.1E-11 3.9E-16 108.9 12.3 157 100-268 2-171 (260)
60 4gp7_A Metallophosphoesterase; 99.3 1E-11 3.5E-16 102.5 11.1 114 95-218 2-119 (171)
61 3g5u_A MCG1178, multidrug resi 99.3 1E-12 3.6E-17 138.7 6.1 134 91-227 1048-1216(1284)
62 3g5u_A MCG1178, multidrug resi 99.3 1.6E-12 5.6E-17 137.2 5.4 131 91-224 405-568 (1284)
63 3ozx_A RNAse L inhibitor; ATP 99.3 6.7E-12 2.3E-16 121.6 8.9 129 95-226 287-429 (538)
64 1yqt_A RNAse L inhibitor; ATP- 99.2 5.4E-12 1.9E-16 122.3 5.3 143 80-226 25-202 (538)
65 3bk7_A ABC transporter ATP-bin 99.2 3.6E-11 1.2E-15 118.1 9.7 130 93-226 373-515 (607)
66 2rhm_A Putative kinase; P-loop 99.2 4.9E-11 1.7E-15 98.8 8.0 163 100-267 3-185 (193)
67 1yqt_A RNAse L inhibitor; ATP- 99.2 5.5E-11 1.9E-15 115.2 9.4 130 93-226 303-445 (538)
68 3bk7_A ABC transporter ATP-bin 99.2 9.2E-12 3.2E-16 122.2 3.3 143 80-226 95-272 (607)
69 3vaa_A Shikimate kinase, SK; s 99.1 1.3E-11 4.5E-16 103.9 3.3 46 91-141 14-59 (199)
70 3ux8_A Excinuclease ABC, A sub 99.1 5.2E-11 1.8E-15 118.1 8.0 141 83-226 25-248 (670)
71 3j16_B RLI1P; ribosome recycli 99.1 5.2E-11 1.8E-15 116.9 6.9 127 98-227 99-266 (608)
72 3ozx_A RNAse L inhibitor; ATP 99.1 4.1E-11 1.4E-15 116.1 4.6 125 99-226 22-182 (538)
73 2iw3_A Elongation factor 3A; a 99.1 1.5E-10 5.2E-15 118.5 8.9 58 80-138 675-734 (986)
74 3tr0_A Guanylate kinase, GMP k 99.1 1.4E-09 4.8E-14 90.9 12.3 56 96-156 1-60 (205)
75 2vli_A Antibiotic resistance p 99.0 7.3E-10 2.5E-14 91.0 8.0 158 100-268 3-169 (183)
76 2iw3_A Elongation factor 3A; a 99.0 1.2E-09 4.2E-14 111.8 11.1 141 81-227 440-593 (986)
77 2p5t_B PEZT; postsegregational 99.0 9.2E-10 3.1E-14 96.2 8.8 122 98-222 28-159 (253)
78 1zp6_A Hypothetical protein AT 99.0 5.6E-10 1.9E-14 92.5 7.0 114 98-217 5-123 (191)
79 3ux8_A Excinuclease ABC, A sub 99.0 1.1E-09 3.8E-14 108.5 9.0 35 89-123 335-369 (670)
80 3j16_B RLI1P; ribosome recycli 99.0 1.9E-09 6.3E-14 105.9 10.3 132 91-226 362-511 (608)
81 3nwj_A ATSK2; P loop, shikimat 98.9 4.9E-11 1.7E-15 104.8 -1.8 55 83-142 25-83 (250)
82 3zvl_A Bifunctional polynucleo 98.9 3E-09 1E-13 99.8 9.5 132 95-247 251-386 (416)
83 2bdt_A BH3686; alpha-beta prot 98.9 7E-09 2.4E-13 85.9 10.7 113 102-221 2-123 (189)
84 1z6g_A Guanylate kinase; struc 98.9 2.4E-10 8.2E-15 97.9 0.8 48 89-141 10-57 (218)
85 3r20_A Cytidylate kinase; stru 98.9 3.9E-09 1.3E-13 91.8 7.5 66 202-268 148-225 (233)
86 3kb2_A SPBC2 prophage-derived 98.8 1.5E-08 5.3E-13 81.9 10.1 138 104-267 3-163 (173)
87 1kag_A SKI, shikimate kinase I 98.8 1.7E-10 5.9E-15 94.1 -2.1 37 101-142 3-39 (173)
88 1ly1_A Polynucleotide kinase; 98.8 7.9E-09 2.7E-13 84.2 7.9 114 103-220 3-126 (181)
89 4aby_A DNA repair protein RECN 98.8 6.2E-09 2.1E-13 96.7 7.3 39 88-127 47-85 (415)
90 4e22_A Cytidylate kinase; P-lo 98.8 2.4E-09 8.1E-14 93.6 3.4 27 100-126 25-51 (252)
91 2eyu_A Twitching motility prot 98.8 7E-09 2.4E-13 91.5 5.9 44 99-142 22-65 (261)
92 3b85_A Phosphate starvation-in 98.8 4.2E-10 1.4E-14 96.1 -2.0 118 99-227 19-145 (208)
93 1htw_A HI0065; nucleotide-bind 98.8 2.5E-09 8.6E-14 87.5 2.6 52 89-142 20-71 (158)
94 2vf7_A UVRA2, excinuclease ABC 98.7 9.2E-09 3.1E-13 104.1 7.1 45 82-126 503-548 (842)
95 2j41_A Guanylate kinase; GMP, 98.7 9.1E-08 3.1E-12 79.7 11.6 30 97-126 1-30 (207)
96 3trf_A Shikimate kinase, SK; a 98.7 7.6E-09 2.6E-13 85.2 4.4 152 101-268 4-172 (185)
97 2ehv_A Hypothetical protein PH 98.7 4E-08 1.4E-12 84.2 8.9 42 98-140 26-69 (251)
98 3b9q_A Chloroplast SRP recepto 98.7 2.4E-08 8.2E-13 89.9 7.8 49 93-142 91-139 (302)
99 3lnc_A Guanylate kinase, GMP k 98.6 2.6E-08 8.8E-13 85.4 5.9 36 92-127 17-53 (231)
100 3a00_A Guanylate kinase, GMP k 98.6 2E-07 6.8E-12 77.3 10.8 26 102-127 1-26 (186)
101 1ye8_A Protein THEP1, hypothet 98.6 1.7E-08 5.8E-13 83.9 3.9 113 104-227 2-128 (178)
102 3lw7_A Adenylate kinase relate 98.6 2.5E-08 8.5E-13 80.3 4.7 108 104-220 3-122 (179)
103 1s96_A Guanylate kinase, GMP k 98.6 1.6E-07 5.5E-12 80.6 10.1 59 98-156 12-71 (219)
104 2r6f_A Excinuclease ABC subuni 98.6 9.5E-08 3.2E-12 97.5 10.0 42 82-123 630-671 (972)
105 2pt7_A CAG-ALFA; ATPase, prote 98.6 8.4E-09 2.9E-13 94.0 2.1 90 92-211 161-251 (330)
106 1cke_A CK, MSSA, protein (cyti 98.6 3.9E-08 1.3E-12 83.4 5.3 27 101-127 4-30 (227)
107 3fdi_A Uncharacterized protein 98.6 1.7E-07 5.7E-12 79.3 9.1 149 102-268 6-196 (201)
108 2wwf_A Thymidilate kinase, put 98.6 2.3E-07 7.8E-12 77.7 9.9 31 100-130 8-38 (212)
109 1via_A Shikimate kinase; struc 98.6 3E-08 1E-12 81.1 3.7 147 104-268 6-164 (175)
110 4a74_A DNA repair and recombin 98.6 1.4E-07 4.7E-12 79.8 7.9 43 98-140 21-69 (231)
111 1ltq_A Polynucleotide kinase; 98.6 1.1E-07 3.8E-12 84.3 7.5 113 103-220 3-126 (301)
112 1gvn_B Zeta; postsegregational 98.5 2.2E-07 7.7E-12 82.8 9.3 120 99-221 30-159 (287)
113 2ygr_A Uvrabc system protein A 98.5 2.2E-07 7.6E-12 95.1 10.1 42 82-123 648-689 (993)
114 1tq4_A IIGP1, interferon-induc 98.5 1.3E-09 4.6E-14 102.2 -5.8 128 91-226 38-210 (413)
115 2plr_A DTMP kinase, probable t 98.5 2.7E-07 9.3E-12 76.9 8.9 30 101-130 3-32 (213)
116 3hdt_A Putative kinase; struct 98.5 1.7E-07 5.7E-12 80.8 7.8 152 101-267 13-215 (223)
117 2jeo_A Uridine-cytidine kinase 98.5 7.4E-08 2.5E-12 83.5 4.1 41 87-127 10-50 (245)
118 3pih_A Uvrabc system protein A 98.5 8.6E-07 2.9E-11 90.5 12.4 46 179-226 803-852 (916)
119 2iyv_A Shikimate kinase, SK; t 98.5 4.3E-08 1.5E-12 80.7 2.3 148 103-268 3-166 (184)
120 2pbr_A DTMP kinase, thymidylat 98.5 7.7E-08 2.6E-12 79.2 3.9 33 104-136 2-34 (195)
121 1znw_A Guanylate kinase, GMP k 98.5 7.4E-08 2.5E-12 81.3 3.8 31 97-127 15-45 (207)
122 1tev_A UMP-CMP kinase; ploop, 98.5 3.2E-07 1.1E-11 75.4 7.4 27 101-127 2-28 (196)
123 3iij_A Coilin-interacting nucl 98.5 6.6E-09 2.3E-13 85.4 -2.9 28 100-127 9-36 (180)
124 1e6c_A Shikimate kinase; phosp 98.5 2.7E-08 9.4E-13 80.7 0.7 147 103-268 3-168 (173)
125 4eaq_A DTMP kinase, thymidylat 98.4 7.9E-07 2.7E-11 76.6 9.9 30 99-128 23-52 (229)
126 1e69_A Chromosome segregation 98.4 5.2E-07 1.8E-11 81.4 8.9 33 93-126 16-48 (322)
127 2v9p_A Replication protein E1; 98.4 3.1E-08 1.1E-12 89.3 0.7 52 81-137 106-157 (305)
128 3c8u_A Fructokinase; YP_612366 98.4 9.5E-08 3.2E-12 80.6 3.5 44 99-142 19-64 (208)
129 3tau_A Guanylate kinase, GMP k 98.4 8.3E-07 2.8E-11 74.9 9.3 28 100-127 6-33 (208)
130 3euj_A Chromosome partition pr 98.4 7E-08 2.4E-12 92.1 2.9 52 89-142 17-68 (483)
131 1tf7_A KAIC; homohexamer, hexa 98.4 8.1E-08 2.8E-12 92.5 2.9 56 85-141 21-79 (525)
132 3aez_A Pantothenate kinase; tr 98.4 9.9E-08 3.4E-12 86.2 3.2 30 99-128 87-116 (312)
133 3jvv_A Twitching mobility prot 98.4 2.9E-07 1E-11 84.7 6.3 45 98-142 119-163 (356)
134 1nn5_A Similar to deoxythymidy 98.4 5.4E-07 1.9E-11 75.4 7.3 32 99-130 6-37 (215)
135 2c95_A Adenylate kinase 1; tra 98.4 6.3E-07 2.1E-11 73.9 7.6 29 99-127 6-34 (196)
136 2og2_A Putative signal recogni 98.4 1.8E-07 6.2E-12 86.1 4.5 48 94-142 149-196 (359)
137 1vma_A Cell division protein F 98.4 1.2E-06 4E-11 79.0 9.7 44 96-139 98-141 (306)
138 1tf7_A KAIC; homohexamer, hexa 98.4 1.2E-06 4.1E-11 84.3 10.4 115 96-224 275-399 (525)
139 1ukz_A Uridylate kinase; trans 98.4 8.7E-07 3E-11 73.9 8.0 28 100-127 13-40 (203)
140 1zuh_A Shikimate kinase; alpha 98.4 1.4E-07 4.7E-12 76.6 2.9 36 102-142 7-42 (168)
141 2qt1_A Nicotinamide riboside k 98.4 1.2E-06 4.2E-11 73.4 8.5 40 98-141 17-56 (207)
142 2cdn_A Adenylate kinase; phosp 98.3 9.6E-07 3.3E-11 73.7 7.7 28 100-127 18-45 (201)
143 1nks_A Adenylate kinase; therm 98.3 1.7E-06 5.7E-11 70.9 9.0 36 104-139 3-38 (194)
144 2axn_A 6-phosphofructo-2-kinas 98.3 6.9E-07 2.4E-11 86.1 7.5 119 99-217 32-165 (520)
145 2ze6_A Isopentenyl transferase 98.3 1.2E-06 4.1E-11 76.4 8.3 34 103-141 2-35 (253)
146 2npi_A Protein CLP1; CLP1-PCF1 98.3 1.2E-07 4.1E-12 90.1 1.9 45 94-139 130-176 (460)
147 3qf7_A RAD50; ABC-ATPase, ATPa 98.3 1.5E-06 5.1E-11 80.0 9.1 45 181-227 279-330 (365)
148 2dpy_A FLII, flagellum-specifi 98.3 2.2E-07 7.7E-12 87.7 3.2 57 81-139 136-193 (438)
149 2gza_A Type IV secretion syste 98.3 1.9E-07 6.3E-12 86.0 2.4 46 93-139 166-211 (361)
150 2yhs_A FTSY, cell division pro 98.3 5.9E-07 2E-11 85.8 5.9 48 93-141 284-331 (503)
151 2pt5_A Shikimate kinase, SK; a 98.3 2.2E-06 7.7E-11 69.0 8.3 145 104-268 2-161 (168)
152 2obl_A ESCN; ATPase, hydrolase 98.3 3.7E-07 1.2E-11 83.7 3.8 58 81-140 50-108 (347)
153 2w0m_A SSO2452; RECA, SSPF, un 98.3 6E-07 2.1E-11 75.6 4.8 50 89-138 9-59 (235)
154 1rj9_A FTSY, signal recognitio 98.3 5.2E-07 1.8E-11 81.2 4.4 41 101-142 101-141 (304)
155 2ewv_A Twitching motility prot 98.3 3.8E-07 1.3E-11 84.3 3.4 45 98-142 132-176 (372)
156 2kjq_A DNAA-related protein; s 98.2 9.6E-07 3.3E-11 71.1 4.9 42 101-142 35-76 (149)
157 2bwj_A Adenylate kinase 5; pho 98.2 3.7E-06 1.3E-10 69.4 8.7 111 100-219 10-135 (199)
158 3e70_C DPA, signal recognition 98.2 9.6E-07 3.3E-11 80.3 5.5 44 98-142 125-168 (328)
159 3asz_A Uridine kinase; cytidin 98.2 6.3E-07 2.2E-11 75.2 3.8 29 99-127 3-31 (211)
160 2cvh_A DNA repair and recombin 98.2 1.5E-06 5E-11 72.9 6.1 40 98-140 16-55 (220)
161 3ake_A Cytidylate kinase; CMP 98.2 1.7E-06 5.7E-11 72.0 6.3 34 104-142 4-37 (208)
162 2jaq_A Deoxyguanosine kinase; 98.2 2.2E-06 7.4E-11 70.9 6.7 24 104-127 2-25 (205)
163 1kgd_A CASK, peripheral plasma 98.2 8.3E-07 2.9E-11 73.2 4.0 28 100-127 3-30 (180)
164 1sq5_A Pantothenate kinase; P- 98.2 9.6E-07 3.3E-11 79.3 4.5 42 100-141 78-123 (308)
165 2qm8_A GTPase/ATPase; G protei 98.2 2.1E-07 7.1E-12 84.9 -0.2 52 89-141 42-93 (337)
166 3cm0_A Adenylate kinase; ATP-b 98.2 1.1E-06 3.6E-11 72.1 4.0 36 100-140 2-37 (186)
167 1n0w_A DNA repair protein RAD5 98.2 2.6E-06 8.9E-11 72.5 6.4 42 99-140 21-68 (243)
168 2f1r_A Molybdopterin-guanine d 98.1 7.2E-07 2.5E-11 73.7 2.4 40 103-142 3-44 (171)
169 2z0h_A DTMP kinase, thymidylat 98.1 3.2E-06 1.1E-10 69.7 6.3 31 104-134 2-32 (197)
170 1lvg_A Guanylate kinase, GMP k 98.1 9.4E-07 3.2E-11 74.2 3.1 28 100-127 2-29 (198)
171 3sop_A Neuronal-specific septi 98.1 1.2E-06 4E-11 77.5 3.5 37 104-141 4-40 (270)
172 1zak_A Adenylate kinase; ATP:A 98.1 3.8E-06 1.3E-10 71.2 6.5 27 101-127 4-30 (222)
173 3umf_A Adenylate kinase; rossm 98.1 7.4E-06 2.5E-10 70.2 7.9 159 97-267 24-210 (217)
174 1nlf_A Regulatory protein REPA 98.1 8.4E-06 2.9E-10 71.7 8.3 29 99-127 27-55 (279)
175 1qf9_A UMP/CMP kinase, protein 98.1 7.9E-06 2.7E-10 66.8 7.7 27 101-127 5-31 (194)
176 2i3b_A HCR-ntpase, human cance 98.1 7.3E-07 2.5E-11 74.8 1.3 37 102-141 1-37 (189)
177 1ls1_A Signal recognition part 98.1 2E-05 6.9E-10 70.3 10.9 45 94-141 92-136 (295)
178 1cr0_A DNA primase/helicase; R 98.1 1.3E-06 4.6E-11 77.3 3.1 51 89-139 22-73 (296)
179 1rz3_A Hypothetical protein rb 98.1 2.7E-06 9.1E-11 71.3 4.7 44 98-141 18-61 (201)
180 1p9r_A General secretion pathw 98.1 2.3E-06 7.8E-11 80.3 4.4 43 99-142 164-206 (418)
181 2x8a_A Nuclear valosin-contain 98.1 5.3E-06 1.8E-10 73.3 6.4 46 92-142 36-81 (274)
182 2grj_A Dephospho-COA kinase; T 98.0 9.7E-06 3.3E-10 68.0 7.0 37 100-141 10-46 (192)
183 1kht_A Adenylate kinase; phosp 98.0 1.5E-05 5.3E-10 65.0 8.0 28 101-128 2-29 (192)
184 3tlx_A Adenylate kinase 2; str 98.0 8E-06 2.7E-10 70.7 6.0 28 100-127 27-54 (243)
185 1qhl_A Protein (cell division 98.0 3.4E-07 1.2E-11 79.1 -3.0 44 96-141 22-65 (227)
186 3thx_B DNA mismatch repair pro 98.0 1.5E-06 5.1E-11 88.8 1.1 36 91-126 662-697 (918)
187 3dl0_A Adenylate kinase; phosp 98.0 5.8E-06 2E-10 69.6 4.5 24 104-127 2-25 (216)
188 1pzn_A RAD51, DNA repair and r 97.9 7.8E-06 2.7E-10 74.8 5.7 46 96-141 125-176 (349)
189 2oap_1 GSPE-2, type II secreti 97.9 2.6E-06 8.8E-11 81.9 2.5 46 94-140 252-297 (511)
190 1aky_A Adenylate kinase; ATP:A 97.9 1.3E-05 4.4E-10 67.7 6.6 28 100-127 2-29 (220)
191 1ewq_A DNA mismatch repair pro 97.9 3.1E-06 1E-10 85.1 3.1 31 94-127 571-601 (765)
192 3kta_A Chromosome segregation 97.9 8.3E-06 2.8E-10 66.6 5.1 34 93-127 18-51 (182)
193 1lw7_A Transcriptional regulat 97.9 4.6E-06 1.6E-10 76.4 3.8 35 93-127 159-195 (365)
194 3ec2_A DNA replication protein 97.9 3.5E-06 1.2E-10 69.0 2.7 32 96-127 32-63 (180)
195 2vp4_A Deoxynucleoside kinase; 97.9 3.3E-06 1.1E-10 72.3 2.5 42 95-141 13-54 (230)
196 1u0l_A Probable GTPase ENGC; p 97.9 2.8E-06 9.6E-11 76.0 2.1 45 97-142 164-211 (301)
197 2h92_A Cytidylate kinase; ross 97.9 2.9E-05 9.8E-10 65.3 8.2 26 102-127 3-28 (219)
198 3thx_A DNA mismatch repair pro 97.9 9.2E-06 3.1E-10 83.2 5.9 32 92-123 652-683 (934)
199 2qag_B Septin-6, protein NEDD5 97.9 2E-06 6.8E-11 80.8 0.9 40 86-126 25-66 (427)
200 3fb4_A Adenylate kinase; psych 97.9 1.1E-05 3.7E-10 67.8 5.4 24 104-127 2-25 (216)
201 3ney_A 55 kDa erythrocyte memb 97.9 6.3E-06 2.2E-10 69.6 3.9 35 93-127 10-44 (197)
202 2xb4_A Adenylate kinase; ATP-b 97.9 2.9E-05 1E-09 66.0 7.5 24 104-127 2-25 (223)
203 4edh_A DTMP kinase, thymidylat 97.9 6.4E-05 2.2E-09 64.0 9.6 37 100-136 4-40 (213)
204 1zd8_A GTP:AMP phosphotransfer 97.8 1.5E-05 5.2E-10 67.7 5.3 28 100-127 5-32 (227)
205 1zu4_A FTSY; GTPase, signal re 97.8 1.6E-05 5.6E-10 71.8 5.7 48 93-140 96-143 (320)
206 2yv5_A YJEQ protein; hydrolase 97.8 7.4E-06 2.5E-10 73.4 2.8 44 97-142 160-206 (302)
207 3v9p_A DTMP kinase, thymidylat 97.8 3.5E-05 1.2E-09 66.4 6.8 31 99-129 22-52 (227)
208 3szr_A Interferon-induced GTP- 97.8 4.9E-06 1.7E-10 81.6 1.4 37 105-141 48-84 (608)
209 3a8t_A Adenylate isopentenyltr 97.8 0.00011 3.7E-09 67.0 10.2 37 100-141 38-74 (339)
210 2rcn_A Probable GTPase ENGC; Y 97.8 8.1E-06 2.8E-10 75.0 2.7 38 100-137 213-250 (358)
211 2bbw_A Adenylate kinase 4, AK4 97.8 1.3E-05 4.5E-10 69.0 3.9 26 101-126 26-51 (246)
212 3be4_A Adenylate kinase; malar 97.8 7.9E-05 2.7E-09 62.9 8.5 27 101-127 4-30 (217)
213 1t9h_A YLOQ, probable GTPase E 97.8 3.9E-06 1.3E-10 75.6 0.2 44 97-141 168-214 (307)
214 1ixz_A ATP-dependent metallopr 97.8 2.1E-05 7.2E-10 67.8 4.8 45 93-142 42-86 (254)
215 3lda_A DNA repair protein RAD5 97.8 2.3E-05 7.9E-10 73.1 5.3 43 98-140 174-222 (400)
216 1bif_A 6-phosphofructo-2-kinas 97.7 4.3E-05 1.5E-09 72.4 6.8 117 100-216 37-168 (469)
217 2qor_A Guanylate kinase; phosp 97.7 1.6E-05 5.4E-10 66.5 3.3 29 99-127 9-37 (204)
218 1iy2_A ATP-dependent metallopr 97.7 2.9E-05 9.8E-10 68.1 5.0 45 93-142 66-110 (278)
219 1ak2_A Adenylate kinase isoenz 97.7 5.3E-05 1.8E-09 64.7 6.3 28 100-127 14-41 (233)
220 1y63_A LMAJ004144AAA protein; 97.7 2.7E-05 9.3E-10 64.1 3.9 43 95-141 3-45 (184)
221 1nij_A Hypothetical protein YJ 97.6 1.3E-05 4.3E-10 72.3 1.6 41 102-142 4-51 (318)
222 3tqc_A Pantothenate kinase; bi 97.6 4.5E-05 1.5E-09 69.1 5.2 27 101-127 91-117 (321)
223 2dr3_A UPF0273 protein PH0284; 97.6 3.5E-05 1.2E-09 65.4 4.3 43 98-140 19-61 (247)
224 3e1y_E Eukaryotic peptide chai 97.6 3.1E-05 1.1E-09 65.6 3.8 48 13-73 149-198 (204)
225 2px0_A Flagellar biosynthesis 97.6 4.3E-05 1.5E-09 68.3 4.8 42 100-141 103-145 (296)
226 1jjv_A Dephospho-COA kinase; P 97.6 2.1E-05 7.3E-10 65.5 2.4 33 103-141 3-35 (206)
227 3lv8_A DTMP kinase, thymidylat 97.6 0.00027 9.2E-09 61.1 9.5 33 100-132 25-57 (236)
228 1e4v_A Adenylate kinase; trans 97.6 0.00019 6.7E-09 60.2 8.2 24 104-127 2-25 (214)
229 2ffh_A Protein (FFH); SRP54, s 97.6 0.00055 1.9E-08 64.2 11.7 46 94-141 92-137 (425)
230 1pui_A ENGB, probable GTP-bind 97.5 1.7E-05 5.8E-10 65.8 1.0 30 97-126 21-50 (210)
231 1svm_A Large T antigen; AAA+ f 97.5 3E-05 1E-09 71.8 2.6 35 92-126 159-193 (377)
232 3gmt_A Adenylate kinase; ssgci 97.5 0.00014 4.9E-09 62.7 6.6 26 102-127 8-33 (230)
233 1odf_A YGR205W, hypothetical 3 97.5 5.6E-05 1.9E-09 67.4 4.1 30 99-128 28-57 (290)
234 1uj2_A Uridine-cytidine kinase 97.5 7.4E-05 2.5E-09 64.6 4.4 44 100-143 20-68 (252)
235 2v54_A DTMP kinase, thymidylat 97.5 7.2E-05 2.5E-09 61.8 3.9 27 100-126 2-28 (204)
236 1uf9_A TT1252 protein; P-loop, 97.5 4E-05 1.4E-09 63.3 2.2 35 101-141 7-41 (203)
237 3kl4_A SRP54, signal recogniti 97.5 0.00058 2E-08 64.2 10.4 42 101-142 96-137 (433)
238 2if2_A Dephospho-COA kinase; a 97.4 6.5E-05 2.2E-09 62.4 3.3 22 104-126 3-24 (204)
239 1oix_A RAS-related protein RAB 97.4 0.0001 3.5E-09 60.6 4.4 39 103-141 30-78 (191)
240 2qnr_A Septin-2, protein NEDD5 97.4 4.4E-05 1.5E-09 68.3 2.1 40 82-127 4-44 (301)
241 1wb9_A DNA mismatch repair pro 97.4 8.2E-05 2.8E-09 75.1 3.9 35 91-126 597-631 (800)
242 2o5v_A DNA replication and rep 97.4 0.00012 4.1E-09 67.2 4.7 35 89-124 14-48 (359)
243 3sr0_A Adenylate kinase; phosp 97.4 0.00022 7.6E-09 60.3 5.9 24 104-127 2-25 (206)
244 1a7j_A Phosphoribulokinase; tr 97.3 5.4E-05 1.9E-09 67.4 1.6 42 101-142 4-45 (290)
245 2p67_A LAO/AO transport system 97.3 0.00011 3.6E-09 66.8 3.5 47 92-138 46-92 (341)
246 4hlc_A DTMP kinase, thymidylat 97.3 0.0015 5.2E-08 55.0 10.5 33 102-135 2-34 (205)
247 1w1w_A Structural maintenance 97.3 0.00016 5.5E-09 67.5 4.7 32 97-128 21-52 (430)
248 2o8b_B DNA mismatch repair pro 97.3 0.00012 4E-09 75.8 4.0 36 91-127 771-813 (1022)
249 1q3t_A Cytidylate kinase; nucl 97.3 0.00014 5E-09 62.0 3.9 28 100-127 14-41 (236)
250 3hr8_A Protein RECA; alpha and 97.3 0.00016 5.6E-09 66.3 4.4 43 99-141 58-100 (356)
251 1in4_A RUVB, holliday junction 97.3 2.4E-05 8.3E-10 70.7 -1.1 25 103-127 52-76 (334)
252 1j8m_F SRP54, signal recogniti 97.3 0.00018 6.1E-09 64.3 4.5 47 95-142 92-138 (297)
253 1sxj_E Activator 1 40 kDa subu 97.3 0.00012 3.9E-09 65.9 2.9 37 105-141 39-75 (354)
254 1gtv_A TMK, thymidylate kinase 97.2 7.3E-05 2.5E-09 62.3 1.4 25 104-128 2-26 (214)
255 1vht_A Dephospho-COA kinase; s 97.2 0.0002 6.7E-09 60.2 4.0 35 101-141 3-37 (218)
256 1lv7_A FTSH; alpha/beta domain 97.2 0.00072 2.5E-08 58.1 7.4 37 103-142 46-82 (257)
257 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 0.00027 9.3E-09 65.6 4.9 41 98-138 16-67 (392)
258 3k1j_A LON protease, ATP-depen 97.2 0.00014 4.9E-09 71.0 3.1 51 91-141 49-99 (604)
259 2www_A Methylmalonic aciduria 97.2 0.00032 1.1E-08 63.9 5.1 30 100-129 72-101 (349)
260 1zun_B Sulfate adenylate trans 97.2 0.0002 7E-09 67.0 3.6 49 13-72 383-433 (434)
261 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00045 1.5E-08 55.2 4.9 29 97-126 19-47 (149)
262 1ypw_A Transitional endoplasmi 97.1 0.00041 1.4E-08 70.0 5.6 43 97-142 233-275 (806)
263 2f9l_A RAB11B, member RAS onco 97.1 0.00033 1.1E-08 57.7 3.9 38 104-141 7-54 (199)
264 2r6a_A DNAB helicase, replicat 97.1 0.0019 6.6E-08 60.7 9.4 51 89-139 190-241 (454)
265 2qag_C Septin-7; cell cycle, c 97.1 0.00017 6E-09 67.5 2.2 41 81-127 16-56 (418)
266 1xjc_A MOBB protein homolog; s 97.1 0.0005 1.7E-08 56.5 4.6 28 103-130 5-32 (169)
267 2zr9_A Protein RECA, recombina 97.0 0.00038 1.3E-08 63.5 4.2 43 98-140 57-99 (349)
268 1np6_A Molybdopterin-guanine d 97.0 0.00054 1.8E-08 56.4 4.5 37 102-138 6-44 (174)
269 2dhr_A FTSH; AAA+ protein, hex 97.0 0.00043 1.5E-08 66.2 4.5 45 93-142 57-101 (499)
270 3bos_A Putative DNA replicatio 97.0 0.00051 1.7E-08 57.5 4.4 41 101-141 51-91 (242)
271 1udx_A The GTP-binding protein 97.0 0.00026 9E-09 66.2 2.8 33 93-125 148-180 (416)
272 1ex7_A Guanylate kinase; subst 97.0 0.00042 1.4E-08 57.8 3.2 24 104-127 3-26 (186)
273 3dm5_A SRP54, signal recogniti 97.0 0.00078 2.7E-08 63.5 5.5 42 101-142 99-140 (443)
274 3m6a_A ATP-dependent protease 96.9 0.00046 1.6E-08 66.6 3.7 42 95-138 102-143 (543)
275 4fcw_A Chaperone protein CLPB; 96.9 0.00087 3E-08 58.9 5.1 40 101-140 46-85 (311)
276 3d3q_A TRNA delta(2)-isopenten 96.9 0.00073 2.5E-08 61.6 4.6 34 103-141 8-41 (340)
277 3j2k_7 ERF3, eukaryotic polype 96.9 0.00043 1.5E-08 65.0 3.0 48 13-73 387-436 (439)
278 2ga8_A Hypothetical 39.9 kDa p 96.9 0.0003 1E-08 64.5 1.8 33 95-127 15-49 (359)
279 3crm_A TRNA delta(2)-isopenten 96.9 0.00072 2.5E-08 61.2 4.2 25 103-127 6-30 (323)
280 3ld9_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 57.7 4.1 38 96-133 15-53 (223)
281 2w58_A DNAI, primosome compone 96.8 0.0011 3.6E-08 54.8 4.7 35 103-137 55-89 (202)
282 3cf0_A Transitional endoplasmi 96.8 0.00065 2.2E-08 60.2 3.5 41 98-141 45-85 (301)
283 2xxa_A Signal recognition part 96.8 0.0054 1.9E-07 57.5 9.9 43 100-142 98-141 (433)
284 2gj8_A MNME, tRNA modification 96.8 0.00066 2.3E-08 54.7 3.2 27 100-126 2-28 (172)
285 1jbk_A CLPB protein; beta barr 96.7 0.0015 5.2E-08 52.2 5.0 28 100-127 41-68 (195)
286 2f6r_A COA synthase, bifunctio 96.7 0.00081 2.8E-08 59.3 3.6 36 100-141 73-108 (281)
287 1v5w_A DMC1, meiotic recombina 96.7 0.0017 5.6E-08 58.9 5.7 43 98-140 118-166 (343)
288 4tmk_A Protein (thymidylate ki 96.7 0.0013 4.4E-08 55.9 4.6 31 101-131 2-32 (213)
289 1sxj_C Activator 1 40 kDa subu 96.7 0.00025 8.5E-09 63.9 0.0 35 94-128 36-72 (340)
290 4a1f_A DNAB helicase, replicat 96.7 0.0096 3.3E-07 54.1 10.5 51 89-139 33-83 (338)
291 2z43_A DNA repair and recombin 96.7 0.0012 4.3E-08 59.2 4.5 43 98-140 103-151 (324)
292 3exa_A TRNA delta(2)-isopenten 96.6 0.0017 5.8E-08 58.6 5.0 27 101-127 2-28 (322)
293 4ad8_A DNA repair protein RECN 96.6 0.00069 2.4E-08 64.8 2.5 37 88-125 47-83 (517)
294 2ocp_A DGK, deoxyguanosine kin 96.6 0.0012 4.2E-08 56.3 3.6 27 101-127 1-27 (241)
295 2ygr_A Uvrabc system protein A 96.6 0.0011 3.7E-08 68.1 3.4 40 81-120 25-64 (993)
296 2p65_A Hypothetical protein PF 96.5 0.0021 7.2E-08 51.3 4.5 28 100-127 41-68 (187)
297 1fnn_A CDC6P, cell division co 96.5 0.0023 7.8E-08 57.7 5.1 39 100-138 40-81 (389)
298 2qmh_A HPR kinase/phosphorylas 96.5 0.0014 4.7E-08 55.5 3.3 28 100-127 32-59 (205)
299 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0071 2.4E-07 51.5 7.9 39 100-141 37-75 (262)
300 3h4m_A Proteasome-activating n 96.5 0.0051 1.8E-07 53.3 7.1 40 99-141 48-87 (285)
301 2orw_A Thymidine kinase; TMTK, 96.5 0.0023 7.7E-08 52.9 4.5 33 101-133 2-34 (184)
302 2qby_A CDC6 homolog 1, cell di 96.5 0.0013 4.5E-08 59.0 3.2 40 99-138 42-84 (386)
303 3b9p_A CG5977-PA, isoform A; A 96.5 0.0016 5.6E-08 56.9 3.8 28 100-127 52-79 (297)
304 1p5z_B DCK, deoxycytidine kina 96.5 0.00082 2.8E-08 58.2 1.8 28 100-127 22-49 (263)
305 1u94_A RECA protein, recombina 96.5 0.002 6.7E-08 59.0 4.4 42 99-140 60-101 (356)
306 3foz_A TRNA delta(2)-isopenten 96.5 0.0026 8.8E-08 57.3 5.0 27 101-127 9-35 (316)
307 2vf7_A UVRA2, excinuclease ABC 96.5 0.0013 4.4E-08 66.7 3.3 47 179-225 377-424 (842)
308 1l8q_A Chromosomal replication 96.5 0.0016 5.6E-08 57.9 3.7 38 101-138 36-73 (324)
309 3qks_A DNA double-strand break 96.5 0.0021 7.1E-08 53.8 4.1 25 103-127 24-48 (203)
310 4b4t_M 26S protease regulatory 96.4 0.0052 1.8E-07 57.7 7.1 42 98-142 211-252 (434)
311 3tmk_A Thymidylate kinase; pho 96.4 0.0019 6.4E-08 55.0 3.7 29 100-128 3-31 (216)
312 4b4t_K 26S protease regulatory 96.4 0.0059 2E-07 57.3 7.2 42 98-142 202-243 (428)
313 3qkt_A DNA double-strand break 96.4 0.0022 7.4E-08 57.9 4.1 44 181-226 248-298 (339)
314 2wji_A Ferrous iron transport 96.4 0.0016 5.6E-08 51.8 2.9 24 103-126 4-27 (165)
315 4b4t_J 26S protease regulatory 96.4 0.0053 1.8E-07 57.1 6.7 42 98-142 178-219 (405)
316 3p32_A Probable GTPase RV1496/ 96.4 0.003 1E-07 57.4 4.9 41 100-140 77-117 (355)
317 3n70_A Transport activator; si 96.4 0.0021 7.3E-08 50.5 3.4 38 100-138 22-59 (145)
318 2r6f_A Excinuclease ABC subuni 96.4 0.0016 5.5E-08 66.7 3.3 40 81-120 23-62 (972)
319 3syl_A Protein CBBX; photosynt 96.4 0.0029 1E-07 55.5 4.6 42 100-141 65-110 (309)
320 4ag6_A VIRB4 ATPase, type IV s 96.4 0.0026 8.8E-08 58.4 4.4 38 101-138 34-71 (392)
321 4b4t_L 26S protease subunit RP 96.3 0.0064 2.2E-07 57.2 7.1 42 98-142 211-252 (437)
322 2v3c_C SRP54, signal recogniti 96.3 0.0013 4.5E-08 61.7 2.3 42 101-142 98-139 (432)
323 3bh0_A DNAB-like replicative h 96.3 0.0037 1.3E-07 55.9 5.1 51 89-139 55-105 (315)
324 3pih_A Uvrabc system protein A 96.3 0.0015 5.2E-08 66.7 2.7 29 91-119 13-41 (916)
325 1ega_A Protein (GTP-binding pr 96.3 0.0018 6.3E-08 57.5 2.9 27 100-126 6-32 (301)
326 1yrb_A ATP(GTP)binding protein 96.3 0.005 1.7E-07 52.6 5.5 42 99-141 11-52 (262)
327 2v1u_A Cell division control p 96.3 0.022 7.4E-07 51.0 9.9 28 100-127 42-69 (387)
328 2ce7_A Cell division protein F 96.2 0.0033 1.1E-07 59.7 4.6 41 96-141 45-85 (476)
329 4b4t_I 26S protease regulatory 96.2 0.0092 3.1E-07 55.9 7.4 42 98-142 212-253 (437)
330 2b8t_A Thymidine kinase; deoxy 96.2 0.0046 1.6E-07 52.9 4.9 37 100-136 10-46 (223)
331 2wjg_A FEOB, ferrous iron tran 96.2 0.0025 8.6E-08 51.3 3.1 23 103-125 8-30 (188)
332 3t15_A Ribulose bisphosphate c 96.2 0.0029 9.8E-08 56.0 3.7 37 99-138 33-69 (293)
333 3tqf_A HPR(Ser) kinase; transf 96.2 0.0031 1.1E-07 52.1 3.5 26 100-125 14-39 (181)
334 4b4t_H 26S protease regulatory 96.2 0.0071 2.4E-07 57.2 6.4 43 97-142 238-280 (467)
335 2j37_W Signal recognition part 96.2 0.0037 1.3E-07 59.8 4.5 43 100-142 99-141 (504)
336 3p26_A Elongation factor 1 alp 96.2 0.0027 9.4E-08 60.1 3.5 49 12-73 421-474 (483)
337 1njg_A DNA polymerase III subu 96.2 0.0035 1.2E-07 51.8 3.8 25 103-127 46-70 (250)
338 1mky_A Probable GTP-binding pr 96.2 0.0038 1.3E-07 58.3 4.5 39 103-141 181-230 (439)
339 3ice_A Transcription terminati 96.1 0.0031 1E-07 58.6 3.4 34 94-127 166-199 (422)
340 2zej_A Dardarin, leucine-rich 96.1 0.0022 7.5E-08 51.9 2.2 22 104-125 4-25 (184)
341 2q6t_A DNAB replication FORK h 96.1 0.034 1.2E-06 51.9 10.6 47 93-139 191-238 (444)
342 3eph_A TRNA isopentenyltransfe 96.1 0.0038 1.3E-07 58.1 3.9 34 201-234 189-222 (409)
343 1xx6_A Thymidine kinase; NESG, 96.0 0.0068 2.3E-07 50.5 5.0 38 99-136 5-42 (191)
344 2qtf_A Protein HFLX, GTP-bindi 96.0 0.0045 1.6E-07 56.7 4.2 38 104-141 181-228 (364)
345 3hjn_A DTMP kinase, thymidylat 96.0 0.0061 2.1E-07 50.8 4.5 33 104-136 2-34 (197)
346 2bjv_A PSP operon transcriptio 95.9 0.0061 2.1E-07 52.4 4.4 38 101-138 28-65 (265)
347 3eie_A Vacuolar protein sortin 95.9 0.01 3.4E-07 52.9 5.9 37 100-139 49-85 (322)
348 4i1u_A Dephospho-COA kinase; s 95.9 0.0038 1.3E-07 53.0 2.8 33 104-142 11-43 (210)
349 1g41_A Heat shock protein HSLU 95.9 0.013 4.3E-07 55.2 6.6 36 103-141 51-86 (444)
350 2wsm_A Hydrogenase expression/ 95.8 0.0079 2.7E-07 49.9 4.6 27 101-127 29-55 (221)
351 1d2n_A N-ethylmaleimide-sensit 95.8 0.0056 1.9E-07 53.0 3.8 29 99-127 61-89 (272)
352 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0055 1.9E-07 54.9 3.8 40 100-141 43-82 (322)
353 2ohf_A Protein OLA1, GTP-bindi 95.8 0.0051 1.7E-07 57.1 3.7 28 98-125 18-45 (396)
354 2qgz_A Helicase loader, putati 95.8 0.0072 2.5E-07 53.9 4.5 36 102-137 152-188 (308)
355 2chg_A Replication factor C sm 95.8 0.0054 1.8E-07 50.1 3.3 24 104-127 40-63 (226)
356 3lxx_A GTPase IMAP family memb 95.8 0.0045 1.5E-07 52.5 2.9 26 102-127 29-54 (239)
357 3hws_A ATP-dependent CLP prote 95.8 0.005 1.7E-07 55.7 3.4 27 101-127 50-76 (363)
358 1ofh_A ATP-dependent HSL prote 95.8 0.0054 1.8E-07 53.5 3.4 38 101-141 49-86 (310)
359 1ypw_A Transitional endoplasmi 95.7 0.0032 1.1E-07 63.5 2.1 43 96-141 505-547 (806)
360 2i1q_A DNA repair and recombin 95.7 0.0087 3E-07 53.3 4.7 28 98-125 94-121 (322)
361 1xp8_A RECA protein, recombina 95.7 0.007 2.4E-07 55.5 4.1 42 99-140 71-112 (366)
362 1z2a_A RAS-related protein RAB 95.7 0.0059 2E-07 47.7 3.2 23 104-126 7-29 (168)
363 2zts_A Putative uncharacterize 95.7 0.006 2E-07 51.4 3.4 39 99-137 27-66 (251)
364 3d8b_A Fidgetin-like protein 1 95.7 0.02 6.9E-07 51.8 7.1 39 100-141 115-153 (357)
365 1m2o_B GTP-binding protein SAR 95.7 0.0064 2.2E-07 49.5 3.3 32 93-125 15-46 (190)
366 1kao_A RAP2A; GTP-binding prot 95.7 0.0066 2.3E-07 47.2 3.2 24 103-126 4-27 (167)
367 2dyk_A GTP-binding protein; GT 95.6 0.0067 2.3E-07 47.1 3.2 23 104-126 3-25 (161)
368 2ce2_X GTPase HRAS; signaling 95.6 0.006 2.1E-07 47.3 2.9 23 104-126 5-27 (166)
369 2ged_A SR-beta, signal recogni 95.6 0.0072 2.4E-07 48.8 3.5 26 101-126 47-72 (193)
370 2r62_A Cell division protease 95.6 0.0024 8.2E-08 55.0 0.6 24 104-127 46-69 (268)
371 1ko7_A HPR kinase/phosphatase; 95.6 0.0071 2.4E-07 54.4 3.6 25 101-125 143-167 (314)
372 2lkc_A Translation initiation 95.6 0.0082 2.8E-07 47.5 3.6 26 100-125 6-31 (178)
373 3uk6_A RUVB-like 2; hexameric 95.6 0.007 2.4E-07 54.4 3.5 27 101-127 69-95 (368)
374 1u8z_A RAS-related protein RAL 95.6 0.0072 2.5E-07 47.0 3.2 24 103-126 5-28 (168)
375 2qby_B CDC6 homolog 3, cell di 95.6 0.0078 2.7E-07 54.2 3.8 28 100-127 43-70 (384)
376 2z4s_A Chromosomal replication 95.6 0.0065 2.2E-07 56.9 3.4 37 102-138 130-168 (440)
377 3k53_A Ferrous iron transport 95.5 0.0062 2.1E-07 52.9 2.9 25 103-127 4-28 (271)
378 1ek0_A Protein (GTP-binding pr 95.5 0.0077 2.6E-07 47.1 3.2 23 104-126 5-27 (170)
379 1z0j_A RAB-22, RAS-related pro 95.5 0.008 2.7E-07 47.0 3.2 24 103-126 7-30 (170)
380 3cf2_A TER ATPase, transitiona 95.5 0.012 4.2E-07 59.3 5.3 41 97-140 233-273 (806)
381 1tue_A Replication protein E1; 95.5 0.0073 2.5E-07 51.2 3.1 29 99-127 55-83 (212)
382 1ky3_A GTP-binding protein YPT 95.5 0.008 2.7E-07 47.6 3.2 24 103-126 9-32 (182)
383 2erx_A GTP-binding protein DI- 95.5 0.0073 2.5E-07 47.3 2.9 23 103-125 4-26 (172)
384 1z08_A RAS-related protein RAB 95.5 0.0081 2.8E-07 47.1 3.2 23 104-126 8-30 (170)
385 3t34_A Dynamin-related protein 95.5 0.0071 2.4E-07 54.8 3.2 31 92-125 27-57 (360)
386 1sxj_D Activator 1 41 kDa subu 95.5 0.0075 2.6E-07 53.6 3.3 23 105-127 61-83 (353)
387 1jny_A EF-1-alpha, elongation 95.5 0.0072 2.5E-07 56.5 3.2 48 13-73 377-426 (435)
388 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.0085 2.9E-07 47.4 3.2 23 104-126 9-31 (177)
389 1c1y_A RAS-related protein RAP 95.5 0.0085 2.9E-07 46.7 3.2 23 104-126 5-27 (167)
390 1g16_A RAS-related protein SEC 95.4 0.0079 2.7E-07 47.1 2.9 23 104-126 5-27 (170)
391 1um8_A ATP-dependent CLP prote 95.4 0.008 2.7E-07 54.6 3.4 36 101-139 71-106 (376)
392 1f60_A Elongation factor EEF1A 95.4 0.0082 2.8E-07 56.5 3.5 48 13-73 389-438 (458)
393 2nzj_A GTP-binding protein REM 95.4 0.0072 2.5E-07 47.6 2.7 24 103-126 5-28 (175)
394 1upt_A ARL1, ADP-ribosylation 95.4 0.012 4.1E-07 46.1 4.0 26 101-126 6-31 (171)
395 3auy_A DNA double-strand break 95.4 0.009 3.1E-07 54.5 3.5 29 95-124 19-47 (371)
396 2fn4_A P23, RAS-related protei 95.4 0.0086 2.9E-07 47.4 3.0 24 103-126 10-33 (181)
397 2dy1_A Elongation factor G; tr 95.4 0.0089 3E-07 59.0 3.7 31 97-127 4-34 (665)
398 1r2q_A RAS-related protein RAB 95.4 0.0095 3.3E-07 46.5 3.2 22 104-125 8-29 (170)
399 3q85_A GTP-binding protein REM 95.3 0.0079 2.7E-07 47.2 2.7 22 104-125 4-25 (169)
400 2hf9_A Probable hydrogenase ni 95.3 0.016 5.6E-07 48.1 4.7 28 101-128 37-64 (226)
401 2qp9_X Vacuolar protein sortin 95.3 0.0091 3.1E-07 54.2 3.4 28 100-127 82-109 (355)
402 4dsu_A GTPase KRAS, isoform 2B 95.3 0.0099 3.4E-07 47.4 3.2 24 103-126 5-28 (189)
403 3pfi_A Holliday junction ATP-d 95.3 0.01 3.5E-07 52.7 3.6 26 102-127 55-80 (338)
404 3bc1_A RAS-related protein RAB 95.3 0.0099 3.4E-07 47.5 3.2 24 103-126 12-35 (195)
405 2j9r_A Thymidine kinase; TK1, 95.3 0.022 7.6E-07 48.4 5.4 38 99-136 25-62 (214)
406 3clv_A RAB5 protein, putative; 95.2 0.015 5.1E-07 46.7 4.1 25 102-126 7-31 (208)
407 3bgw_A DNAB-like replicative h 95.2 0.017 5.7E-07 54.3 4.9 43 98-140 193-235 (444)
408 3con_A GTPase NRAS; structural 95.2 0.011 3.7E-07 47.6 3.2 24 103-126 22-45 (190)
409 1r5b_A Eukaryotic peptide chai 95.2 0.0067 2.3E-07 57.3 2.1 48 13-73 415-464 (467)
410 3llm_A ATP-dependent RNA helic 95.2 0.0076 2.6E-07 51.1 2.3 26 98-123 72-97 (235)
411 1z0f_A RAB14, member RAS oncog 95.2 0.011 3.9E-07 46.6 3.2 24 103-126 16-39 (179)
412 2oil_A CATX-8, RAS-related pro 95.2 0.011 3.8E-07 47.7 3.2 24 103-126 26-49 (193)
413 2hxs_A RAB-26, RAS-related pro 95.2 0.011 3.8E-07 46.8 3.1 24 103-126 7-30 (178)
414 1f6b_A SAR1; gtpases, N-termin 95.2 0.0083 2.8E-07 49.2 2.4 31 93-124 17-47 (198)
415 1r8s_A ADP-ribosylation factor 95.2 0.012 4E-07 45.9 3.2 23 104-126 2-24 (164)
416 2zan_A Vacuolar protein sortin 95.2 0.02 7E-07 53.5 5.3 39 100-140 165-203 (444)
417 2a9k_A RAS-related protein RAL 95.2 0.012 4E-07 46.8 3.2 24 103-126 19-42 (187)
418 3q72_A GTP-binding protein RAD 95.2 0.0097 3.3E-07 46.5 2.6 23 104-126 4-26 (166)
419 1nrj_B SR-beta, signal recogni 95.1 0.011 3.9E-07 48.7 3.2 25 103-127 13-37 (218)
420 2y8e_A RAB-protein 6, GH09086P 95.1 0.011 3.7E-07 46.7 2.9 24 103-126 15-38 (179)
421 2g6b_A RAS-related protein RAB 95.1 0.012 4.1E-07 46.6 3.2 25 103-127 11-35 (180)
422 2efe_B Small GTP-binding prote 95.1 0.012 4.2E-07 46.6 3.2 24 103-126 13-36 (181)
423 3vfd_A Spastin; ATPase, microt 95.1 0.034 1.2E-06 50.8 6.5 39 100-141 146-184 (389)
424 3io5_A Recombination and repai 95.1 0.013 4.5E-07 52.9 3.6 41 99-140 26-68 (333)
425 1svi_A GTP-binding protein YSX 95.0 0.016 5.3E-07 46.8 3.6 25 101-125 22-46 (195)
426 3tw8_B RAS-related protein RAB 95.0 0.012 4.1E-07 46.5 2.9 22 104-125 11-32 (181)
427 2cxx_A Probable GTP-binding pr 95.0 0.0095 3.3E-07 47.7 2.3 23 104-126 3-25 (190)
428 2bme_A RAB4A, RAS-related prot 95.0 0.012 4.2E-07 46.9 2.9 24 103-126 11-34 (186)
429 2bov_A RAla, RAS-related prote 95.0 0.013 4.6E-07 47.5 3.2 24 103-126 15-38 (206)
430 3ihw_A Centg3; RAS, centaurin, 95.0 0.014 4.7E-07 47.3 3.2 24 103-126 21-44 (184)
431 3t1o_A Gliding protein MGLA; G 95.0 0.014 4.7E-07 46.9 3.2 24 104-127 16-39 (198)
432 3lxw_A GTPase IMAP family memb 95.0 0.012 4E-07 50.6 2.9 25 102-126 21-45 (247)
433 3pqc_A Probable GTP-binding pr 95.0 0.018 6E-07 46.2 3.8 25 102-126 23-47 (195)
434 1sxj_A Activator 1 95 kDa subu 95.0 0.023 7.9E-07 54.1 5.2 37 101-140 76-112 (516)
435 3bwd_D RAC-like GTP-binding pr 95.0 0.017 6E-07 45.8 3.7 26 101-126 7-32 (182)
436 1c9k_A COBU, adenosylcobinamid 95.0 0.011 3.8E-07 48.9 2.5 30 105-138 2-31 (180)
437 1vg8_A RAS-related protein RAB 95.0 0.014 4.9E-07 47.4 3.2 25 102-126 8-32 (207)
438 1m7b_A RND3/RHOE small GTP-bin 95.0 0.013 4.5E-07 47.1 2.9 24 103-126 8-31 (184)
439 3kkq_A RAS-related protein M-R 94.9 0.015 5E-07 46.4 3.2 25 102-126 18-42 (183)
440 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.015 5E-07 46.3 3.2 24 103-126 6-29 (186)
441 2c9o_A RUVB-like 1; hexameric 94.9 0.016 5.4E-07 54.4 3.8 40 101-141 62-101 (456)
442 2gf9_A RAS-related protein RAB 94.9 0.015 5E-07 46.9 3.2 24 103-126 23-46 (189)
443 2r44_A Uncharacterized protein 94.9 0.012 4.1E-07 52.3 2.8 26 102-127 46-71 (331)
444 3co5_A Putative two-component 94.9 0.0064 2.2E-07 47.7 0.9 27 100-126 25-51 (143)
445 3b1v_A Ferrous iron uptake tra 94.9 0.013 4.4E-07 51.3 2.9 23 103-125 4-26 (272)
446 3tkl_A RAS-related protein RAB 94.9 0.015 5.3E-07 46.8 3.2 23 104-126 18-40 (196)
447 1fzq_A ADP-ribosylation factor 94.9 0.017 5.7E-07 46.5 3.4 25 101-125 15-39 (181)
448 2gf0_A GTP-binding protein DI- 94.9 0.014 4.9E-07 47.0 3.0 24 102-125 8-31 (199)
449 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.014 4.7E-07 52.8 3.1 27 99-125 120-146 (331)
450 2dby_A GTP-binding protein; GD 94.8 0.014 4.9E-07 53.5 3.2 23 104-126 3-25 (368)
451 1moz_A ARL1, ADP-ribosylation 94.8 0.012 4.1E-07 46.9 2.4 25 100-124 16-40 (183)
452 1z06_A RAS-related protein RAB 94.8 0.017 5.6E-07 46.6 3.2 24 103-126 21-44 (189)
453 2fg5_A RAB-22B, RAS-related pr 94.8 0.015 5.3E-07 47.0 3.0 24 103-126 24-47 (192)
454 3pvs_A Replication-associated 94.8 0.015 5.1E-07 54.6 3.3 25 103-127 51-75 (447)
455 3end_A Light-independent proto 94.8 0.024 8E-07 49.9 4.4 43 98-140 37-79 (307)
456 3izq_1 HBS1P, elongation facto 94.8 0.012 4E-07 57.6 2.5 48 13-73 556-608 (611)
457 3t5g_A GTP-binding protein RHE 94.8 0.016 5.5E-07 46.1 2.9 23 103-125 7-29 (181)
458 1zcb_A G alpha I/13; GTP-bindi 94.7 0.022 7.5E-07 52.1 4.2 29 100-129 31-59 (362)
459 2a5j_A RAS-related protein RAB 94.7 0.018 6.2E-07 46.5 3.2 24 103-126 22-45 (191)
460 1x3s_A RAS-related protein RAB 94.7 0.018 6.2E-07 46.2 3.2 24 103-126 16-39 (195)
461 3oes_A GTPase rhebl1; small GT 94.7 0.016 5.6E-07 47.2 2.9 27 100-126 22-48 (201)
462 1q57_A DNA primase/helicase; d 94.7 0.024 8.1E-07 53.8 4.4 41 99-139 239-280 (503)
463 2iwr_A Centaurin gamma 1; ANK 94.7 0.018 6E-07 45.7 3.1 24 103-126 8-31 (178)
464 1knx_A Probable HPR(Ser) kinas 94.7 0.017 5.8E-07 51.9 3.2 25 100-124 145-169 (312)
465 1jr3_A DNA polymerase III subu 94.7 0.021 7.3E-07 51.0 3.9 26 102-127 38-63 (373)
466 1hqc_A RUVB; extended AAA-ATPa 94.7 0.012 3.9E-07 51.9 2.1 27 101-127 37-63 (324)
467 2p5s_A RAS and EF-hand domain 94.7 0.022 7.6E-07 46.3 3.7 29 98-126 24-52 (199)
468 1zbd_A Rabphilin-3A; G protein 94.7 0.016 5.6E-07 47.1 2.9 23 104-126 10-32 (203)
469 3dz8_A RAS-related protein RAB 94.7 0.017 5.9E-07 46.7 2.9 25 103-127 24-48 (191)
470 1ojl_A Transcriptional regulat 94.7 0.017 5.9E-07 51.2 3.2 38 100-137 23-60 (304)
471 1zd9_A ADP-ribosylation factor 94.6 0.019 6.6E-07 46.3 3.2 26 101-126 21-46 (188)
472 2atv_A RERG, RAS-like estrogen 94.6 0.025 8.6E-07 45.8 3.9 26 101-126 27-52 (196)
473 1ksh_A ARF-like protein 2; sma 94.6 0.019 6.4E-07 46.0 3.0 26 100-125 16-41 (186)
474 3iby_A Ferrous iron transport 94.6 0.017 5.7E-07 50.1 2.9 23 104-126 3-25 (256)
475 2bcg_Y Protein YP2, GTP-bindin 94.6 0.018 6.2E-07 47.0 2.9 23 104-126 10-32 (206)
476 3reg_A RHO-like small GTPase; 94.6 0.02 6.9E-07 46.3 3.2 25 102-126 23-47 (194)
477 3cph_A RAS-related protein SEC 94.6 0.02 6.9E-07 46.8 3.2 27 100-126 18-44 (213)
478 2r8r_A Sensor protein; KDPD, P 94.6 0.037 1.3E-06 47.4 4.9 41 100-140 3-44 (228)
479 2ew1_A RAS-related protein RAB 94.6 0.019 6.4E-07 47.4 2.9 25 103-127 27-51 (201)
480 3iev_A GTP-binding protein ERA 94.5 0.019 6.5E-07 51.0 3.1 26 101-126 9-34 (308)
481 2xtp_A GTPase IMAP family memb 94.5 0.021 7.3E-07 48.8 3.3 24 102-125 22-45 (260)
482 1zj6_A ADP-ribosylation factor 94.5 0.023 7.9E-07 45.6 3.4 26 100-125 14-39 (187)
483 3c5c_A RAS-like protein 12; GD 94.5 0.022 7.6E-07 46.0 3.2 25 102-126 21-45 (187)
484 1g8p_A Magnesium-chelatase 38 94.5 0.011 3.8E-07 52.5 1.4 24 104-127 47-70 (350)
485 1wf3_A GTP-binding protein; GT 94.5 0.02 6.8E-07 50.8 3.1 22 104-125 9-30 (301)
486 2cjw_A GTP-binding protein GEM 94.5 0.022 7.6E-07 46.4 3.2 23 103-125 7-29 (192)
487 2fv8_A H6, RHO-related GTP-bin 94.5 0.021 7.1E-07 46.9 3.0 25 102-126 25-49 (207)
488 1dek_A Deoxynucleoside monopho 94.5 0.024 8.1E-07 49.0 3.5 24 103-126 2-25 (241)
489 2e87_A Hypothetical protein PH 94.4 0.017 5.6E-07 52.4 2.5 27 100-126 165-191 (357)
490 1gwn_A RHO-related GTP-binding 94.4 0.021 7.1E-07 47.2 2.9 25 102-126 28-52 (205)
491 1jal_A YCHF protein; nucleotid 94.4 0.024 8.1E-07 52.0 3.6 24 102-125 2-25 (363)
492 3pxi_A Negative regulator of g 94.4 0.038 1.3E-06 55.1 5.3 39 104-142 523-561 (758)
493 1iqp_A RFCS; clamp loader, ext 94.4 0.023 8E-07 49.6 3.4 24 104-127 48-71 (327)
494 2fh5_B SR-beta, signal recogni 94.4 0.025 8.7E-07 46.4 3.4 25 102-126 7-31 (214)
495 1qvr_A CLPB protein; coiled co 94.4 0.033 1.1E-06 56.3 4.8 40 103-142 589-628 (854)
496 2o52_A RAS-related protein RAB 94.3 0.018 6.3E-07 47.1 2.4 23 103-125 26-48 (200)
497 3t5d_A Septin-7; GTP-binding p 94.3 0.021 7.2E-07 49.6 2.9 21 104-124 10-30 (274)
498 4dhe_A Probable GTP-binding pr 94.3 0.012 4E-07 48.7 1.2 25 101-125 28-52 (223)
499 3cbq_A GTP-binding protein REM 94.3 0.018 6.2E-07 47.1 2.3 22 103-124 24-45 (195)
500 3te6_A Regulatory protein SIR3 94.3 0.025 8.6E-07 50.9 3.4 45 97-141 40-91 (318)
No 1
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.95 E-value=2.2e-27 Score=201.58 Aligned_cols=189 Identities=77% Similarity=1.251 Sum_probs=162.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~ 159 (269)
.++.|+...+++.+|+++..++|++++|+|+|||||||+++.|++.+...|...+++++++++..+...+++..+++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~ 82 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAEN 82 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHH
Confidence 57889999999999999999999999999999999999999999999754544559999999888888889999988888
Q ss_pred HHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccc
Q 024315 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDP 239 (269)
Q Consensus 160 ~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~ 239 (269)
+..+..++..+...+..+++++.++.+..|+.+++++....+..||+++|++++.+|..+++|...+.++...+.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~~~ 162 (200)
T 3uie_A 83 IRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDP 162 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBC
T ss_pred HHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCCCc
Confidence 88888888888888998888888888888999999888777888999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 240 YEPPLNCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 240 ~e~p~~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
|++|..++++|||+...+++++.. |.++|
T Consensus 163 ~~~~~~~~~~idt~~~~~~~e~v~~i~~~l 192 (200)
T 3uie_A 163 YEPPLNCEISLGREGGTSPIEMAEKVVGYL 192 (200)
T ss_dssp CCCCSSCSEEECCSSCCCHHHHHHHHHHHH
T ss_pred CcCCCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 999999999999964378999888 77765
No 2
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.91 E-value=9.2e-25 Score=213.27 Aligned_cols=227 Identities=32% Similarity=0.513 Sum_probs=182.4
Q ss_pred CccccccccceeeccccccccccchhhhcccccccccccccccccccceEEee-CceeeccCcce--ecCCCeEEEEEcC
Q 024315 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHK-NSVDKRDRQQL--LQQKGCVIWITGL 110 (269)
Q Consensus 34 ~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~-~~v~~~~r~sl--~~~~g~~i~l~G~ 110 (269)
+|..++.+|+|+++|+.+|.+. ...++|+-+...... ......|+. ..|+...|..+ ..|+|.+|+|+|+
T Consensus 332 ~~~y~~~~g~~i~id~~~~~~~------~~~iSgt~ir~~l~~-g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~Gl 404 (573)
T 1m8p_A 332 MVTYLPDTDEYRPVDQVPAGVK------TLNISGTELRRRLRS-GAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGY 404 (573)
T ss_dssp CCCBBTTTTBCCCSSSSCTTSC------CBCCCHHHHHHHHHH-TCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECS
T ss_pred ceEEEcCCCcEEecccCCCCce------eecCChHHHHHHHhc-cCCCCcccccccccHHHHHhcccccccceEEEeecC
Confidence 8999999999999999998521 112455533222111 112335664 34777777777 7899999999999
Q ss_pred CCChHHHHHHHHHHhhccCC-ccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHH
Q 024315 111 SGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR 189 (269)
Q Consensus 111 sGsGKSTla~~L~~~l~~~~-~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r 189 (269)
+||||||+++.|+..|...| ...+.++++.+++.+..+.+|...++.++++++.+++..+.+.+..++.++.++++..|
T Consensus 405 sGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~VI~~~is~~~~~R 484 (573)
T 1m8p_A 405 MNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESR 484 (573)
T ss_dssp TTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHH
T ss_pred CCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCcHHHH
Confidence 99999999999999986444 45789999999888888888999898888888888888888889888888888888888
Q ss_pred HHHHHhCCCC-CccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 190 DACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 190 ~~ar~ll~~~-~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
+.+++++... .+..||+++|+++|.+|+.+++|+..+.+++..+.+++++|++|..++++|||+ ..+++++.. |.++
T Consensus 485 ~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDts-~~s~eevv~~Il~~ 563 (573)
T 1m8p_A 485 KFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFS-KQSVRSIVHEIILV 563 (573)
T ss_dssp HHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECTT-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEECC-CCCHHHHHHHHHHH
Confidence 8888877652 466799999999999999999998888888999999999999998899999995 678888887 7665
Q ss_pred c
Q 024315 268 L 268 (269)
Q Consensus 268 ~ 268 (269)
|
T Consensus 564 l 564 (573)
T 1m8p_A 564 L 564 (573)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.90 E-value=1.7e-24 Score=210.42 Aligned_cols=226 Identities=34% Similarity=0.512 Sum_probs=140.4
Q ss_pred Cccccccccceeeccccccccccchhhhcccccccccccccccccccce-EEee-CceeeccCcce--ecCCCeEEEEEc
Q 024315 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNI-LWHK-NSVDKRDRQQL--LQQKGCVIWITG 109 (269)
Q Consensus 34 ~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~-~~~~-~~v~~~~r~sl--~~~~g~~i~l~G 109 (269)
+|.-++.+|+|+++|+.+|.+ ....++|+.+..... ...++ .|.. ..+....+..+ .+++|++++|+|
T Consensus 305 ~~~y~~~~g~~~~~d~~~~~~------~~~~isgt~ir~~Lr--~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG 376 (552)
T 3cr8_A 305 RMVYVEDRAEHLPEAEAPQGA------RLLTLSGEEFQRRMR--AGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTG 376 (552)
T ss_dssp CEEEEGGGTEEEEGGGSCTTC------CEECCCHHHHHHHHT--TTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEE
T ss_pred ceEEecCCCeEEecccCCCCc------ccccCCHHHHHHHHh--cCCCCCccccccchhhhhhhhcccccccceEEEEEC
Confidence 788899999999999999952 112355555554322 22222 2332 23444444443 688999999999
Q ss_pred CCCChHHHHHHHHHHhhccCCccEE-EECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHH
Q 024315 110 LSGSGKSTLACALSQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKD 188 (269)
Q Consensus 110 ~sGsGKSTla~~L~~~l~~~~~g~i-~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~ 188 (269)
+||||||||+++|++.+.+.+.+.+ ++++++++..+...++++.+++..+++++..+...+...+..++.....+....
T Consensus 377 ~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~~~~~~~~~~ 456 (552)
T 3cr8_A 377 LSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICAPIAPYRQT 456 (552)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEECCCCCCHHH
T ss_pred CCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCccHHH
Confidence 9999999999999999964432345 699998876566677888877766666666666655556666665555544566
Q ss_pred HHHHHHhCCCC-CccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHh
Q 024315 189 RDACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITK 266 (269)
Q Consensus 189 r~~ar~ll~~~-~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~ 266 (269)
++.+++++... ++..||+++|++.|.+|+++++|...+.+++..+.+++.+||+|..++++|||+ ..+++++.. |.+
T Consensus 457 r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt~-~~s~~e~v~~Il~ 535 (552)
T 3cr8_A 457 RRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTT-GLAIDEAVQQILL 535 (552)
T ss_dssp HHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEECCS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEECC-CCCHHHHHHHHHH
Confidence 66777777654 467799999999999999999998778888999999999999999999999995 667887776 777
Q ss_pred hc
Q 024315 267 WL 268 (269)
Q Consensus 267 ~~ 268 (269)
+|
T Consensus 536 ~L 537 (552)
T 3cr8_A 536 KL 537 (552)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 4
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.86 E-value=3.9e-21 Score=188.69 Aligned_cols=190 Identities=48% Similarity=0.865 Sum_probs=149.7
Q ss_pred cccceEEeeCceeeccCcceecC----CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCCh
Q 024315 78 KSTNILWHKNSVDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (269)
Q Consensus 78 ~~~~~~~~~~~v~~~~r~sl~~~----~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~ 153 (269)
+..|+.|+...+++.+|..+..| +|.+|+|+|.+||||||+++.|+..|...+...+.++++.++..+....++..
T Consensus 24 ~~~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~ 103 (630)
T 1x6v_B 24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP 103 (630)
T ss_dssp ----------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSH
T ss_pred ccccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCCh
Confidence 34689999999999999988887 89999999999999999999999998655566889999999888877777887
Q ss_pred hhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhHHHHHhcCccc
Q 024315 154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231 (269)
Q Consensus 154 ~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~ 231 (269)
+++.+.++++.+++..+.+.|.+++.++.++++..++.+++++... ++..|++|+|.++|.+|..+++|+..|.+++.
T Consensus 104 ~dree~~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~ 183 (630)
T 1x6v_B 104 EDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIK 183 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC---
T ss_pred hhhHHHHHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHH
Confidence 8888888888777777778898888887777766777777776543 46779999999999999999999888888888
Q ss_pred cccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 232 GFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 232 ~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
.+.+++..|+.|..++++|||+ ..+++++.. |.++|
T Consensus 184 ~~~~~~~~Ye~p~~~dlvIDts-~~s~eevv~~Il~~L 220 (630)
T 1x6v_B 184 GFTGIDSEYEKPEAPELVLKTD-SCDVNDCVQQVVELL 220 (630)
T ss_dssp -CBTTTBCCCCCSSCSEEEETT-SSCHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCCCcEEEECC-CCCHHHHHHHHHHHH
Confidence 8999999999998899999995 567888887 77665
No 5
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.85 E-value=4.8e-21 Score=186.12 Aligned_cols=227 Identities=39% Similarity=0.667 Sum_probs=160.8
Q ss_pred Cccccccccceeecccccc-ccccchhhhcccccccccccccccccccce-EEee-CceeeccCcce--ecCCCeEEEEE
Q 024315 34 GFFNVSRLRSLQPIKALEE-SATASVVQESAAISGNNLCQNSTVAKSTNI-LWHK-NSVDKRDRQQL--LQQKGCVIWIT 108 (269)
Q Consensus 34 ~~~~~~~~~~f~~idr~~~-~~~~~~~~~~~~~~gagmi~~~~~~~~~~~-~~~~-~~v~~~~r~sl--~~~~g~~i~l~ 108 (269)
+|..++.+|+|+++|+.+| .+. ...+||+- ++...+....++ .|.. ..|....|..+ ..+.+.+++|+
T Consensus 306 ~~~y~~~~g~~i~id~~~~~~~~------~~~iSgt~-iR~~~L~~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~ 378 (546)
T 2gks_A 306 ELVYVPELDQYVEINEAKKRNLK------YINISGTE-IRENFLKQGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLT 378 (546)
T ss_dssp CCEEETTTTEEECSCC----------------------CTHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEE
T ss_pred ceEEEcCCCeEEeeeccCCCCce------eeecchhh-hhhhhhcCCCCCCccccchhHHHHHHHhhccccccceEEEcc
Confidence 8999999999999999998 321 11245543 332201112222 3432 34555555555 56778999999
Q ss_pred cCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHH
Q 024315 109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKD 188 (269)
Q Consensus 109 G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~ 188 (269)
|++||||||+++.|+..+...|....++++|.+++.+..+.+|...++..+++++..+...+...|..++++...+++..
T Consensus 379 G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~d~~~~~~~~ 458 (546)
T 2gks_A 379 GLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSA 458 (546)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHH
T ss_pred CCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHH
Confidence 99999999999999998876666678999999887777777888888877777766666666677887888777777777
Q ss_pred HHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 189 r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
|+.+++++...++..|++++|.+.|.+|..++++...+.+.+..+.++++.|+.|..++++||++ ..+++++.. |.++
T Consensus 459 r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDts-~~s~eev~~~I~~~ 537 (546)
T 2gks_A 459 RNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTT-KLTPEESALKILEF 537 (546)
T ss_dssp HHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEETT-TSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEECC-CCCHHHHHHHHHHH
Confidence 88888888766666799999999999999888876656667777888888999888889999995 567888877 7776
Q ss_pred c
Q 024315 268 L 268 (269)
Q Consensus 268 ~ 268 (269)
|
T Consensus 538 L 538 (546)
T 2gks_A 538 L 538 (546)
T ss_dssp H
T ss_pred H
Confidence 5
No 6
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.80 E-value=3.8e-19 Score=151.79 Aligned_cols=187 Identities=53% Similarity=0.856 Sum_probs=140.4
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~ 159 (269)
+..|+...++...|..+..++|.+++|+|++||||||+++.|++.+. ..|...++++++.++..+....++...++...
T Consensus 4 ~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~ 83 (211)
T 1m7g_A 4 NITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN 83 (211)
T ss_dssp CCCHHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH
T ss_pred cccccccccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHH
Confidence 45677667888888899999999999999999999999999999885 22333889999988876665556766666666
Q ss_pred HHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCC---C-----CCccEEEEeCChhHHHhcChhhHHHHHhcCccc
Q 024315 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP---E-----GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231 (269)
Q Consensus 160 ~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~---~-----~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~ 231 (269)
++.+...+......|..++.++.+.++..++.++.+.. . .+...|++|+|.+.+.+|..+.++...+++...
T Consensus 84 ~~~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~ 163 (211)
T 1m7g_A 84 IRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIK 163 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchh
Confidence 66555444444456766777766555556666666543 1 234568999999999999877777777777766
Q ss_pred cccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 232 GFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 232 ~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
.+..+...|++|..++++||++ ..+++++.. |.++|
T Consensus 164 ~~~~~~~~y~~~~~~~~~IDt~-~~s~eev~~~I~~~l 200 (211)
T 1m7g_A 164 EFTGISAPYEAPANPEVHVKNY-ELPVQDAVKQIIDYL 200 (211)
T ss_dssp SCBTTTBCCCCCSSCSEEEECS-SSCHHHHHHHHHHHH
T ss_pred hhhhhhhhccCCCCCeEEEECC-CCCHHHHHHHHHHHH
Confidence 6677778899888888999994 557888877 76654
No 7
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.78 E-value=3.3e-18 Score=142.80 Aligned_cols=172 Identities=37% Similarity=0.652 Sum_probs=126.9
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCc
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV 175 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~ 175 (269)
.+..++|.+++|+|++||||||+++.|++.+...+...++++++.++..+....++...++...+..+...+..+...|.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~ 86 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGV 86 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCC
Confidence 34456899999999999999999999999987555556688888887766666778887777666665555555556677
Q ss_pred ceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcC
Q 024315 176 ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVW 253 (269)
Q Consensus 176 ~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~ 253 (269)
.++.+....++..++.+++++.. .++..||+++|.+.+.+|..++++...+...+..+..+.+.|++|..++++||++
T Consensus 87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Id~~ 166 (186)
T 2yvu_A 87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTE 166 (186)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCSEEEETT
T ss_pred EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCcEEEECC
Confidence 66766655555556655555442 2456689999999999999777665555556666666777899887789999984
Q ss_pred CCcCHHHHHH-HHhhc
Q 024315 254 YRFELAETWR-ITKWL 268 (269)
Q Consensus 254 ~~~~~~~~~~-i~~~~ 268 (269)
..+++++.. |.++|
T Consensus 167 -~~~~~ev~~~I~~~l 181 (186)
T 2yvu_A 167 -SNTIEHNVSYLYSLV 181 (186)
T ss_dssp -TSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHH
Confidence 467888776 66654
No 8
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.77 E-value=1.2e-17 Score=138.60 Aligned_cols=168 Identities=51% Similarity=0.898 Sum_probs=124.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv 179 (269)
++|.+++|+|++||||||+++.|++.+...|...+.++++.+++.+....++..+++...++++...+..+.+.+...+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT 82 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999998855444578889988887766667787777777777766555556566766665
Q ss_pred ccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcC
Q 024315 180 CLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFE 257 (269)
Q Consensus 180 ~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~ 257 (269)
...+++...+..++.++.. ..+..+++++|.+.+.+|..++++...+.+.+..+..+...|+.|..++++||++ ..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~~-~~~ 161 (179)
T 2pez_A 83 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTD-SCD 161 (179)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEEETT-TSC
T ss_pred ecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCccccCCCCCcEEEECC-CCC
Confidence 5555554444444443321 2345689999999999999888887777777766666777888888889999985 567
Q ss_pred HHHHHH-HHhhc
Q 024315 258 LAETWR-ITKWL 268 (269)
Q Consensus 258 ~~~~~~-i~~~~ 268 (269)
++++.. |.++|
T Consensus 162 ~~~~~~~i~~~l 173 (179)
T 2pez_A 162 VNDCVQQVVELL 173 (179)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887776 65543
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.68 E-value=1.4e-16 Score=147.13 Aligned_cols=141 Identities=17% Similarity=0.248 Sum_probs=101.6
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC----c--ccccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----H--GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~----~--~l~~~~g~~~ 153 (269)
.++++.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++. . ..++.++|..
T Consensus 8 ~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf 86 (359)
T 3fvq_A 8 GHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-QPDSGEISLSGKTIFSKNTNLPVRERRLGYLV 86 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEECcccccccchhhCCEEEEe
Confidence 56777888888899999999999999999999999999999999988 567999999998872 1 1122233332
Q ss_pred hhH--------HHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315 154 EDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (269)
Q Consensus 154 ~~~--------~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~ 208 (269)
|+. .+++. ....+...+...++.. .+..+|++++|| .++|+++.+|++ +++||
T Consensus 87 Q~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l--LLLDE 164 (359)
T 3fvq_A 87 QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL--ILLDE 164 (359)
T ss_dssp TTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEES
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeC
Confidence 211 11110 0011222333334432 345567888888 699999999999 99999
Q ss_pred ChhHHHhcChhhHHH
Q 024315 209 PLQVCEARDPKGLYK 223 (269)
Q Consensus 209 p~~~l~~R~~k~l~~ 223 (269)
|+..++...++.+..
T Consensus 165 Pts~LD~~~r~~l~~ 179 (359)
T 3fvq_A 165 PFSALDEQLRRQIRE 179 (359)
T ss_dssp TTTTSCHHHHHHHHH
T ss_pred CcccCCHHHHHHHHH
Confidence 999999988877654
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.66 E-value=1.8e-16 Score=147.41 Aligned_cols=143 Identities=17% Similarity=0.113 Sum_probs=103.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~- 156 (269)
.++++.++.+.+.++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. ...+.++|..|+.
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~ 85 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSCEEEECTTCC
T ss_pred EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC-CCCCeEEEECCEECCCCCHHHCCEEEEecCCc
Confidence 56777888888899999999999999999999999999999999988 5679999999998752 1112223222211
Q ss_pred -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
.+++.. ...+..++...++.. .+..+|++++|| .++|+++.++++ +++|||+..
T Consensus 86 l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l--LLLDEPts~ 163 (381)
T 3rlf_A 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDEPLSN 163 (381)
T ss_dssp CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE--EEEESTTTT
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE--EEEECCCcC
Confidence 111100 012233444445433 345567888888 699999999999 999999999
Q ss_pred HHhcChhhHHHHH
Q 024315 213 CEARDPKGLYKLA 225 (269)
Q Consensus 213 l~~R~~k~l~~~~ 225 (269)
++...++.+.+.+
T Consensus 164 LD~~~~~~l~~~l 176 (381)
T 3rlf_A 164 LDAALRVQMRIEI 176 (381)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9998887765443
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.65 E-value=3.1e-16 Score=144.69 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=106.4
Q ss_pred ccccccccccccccccceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc
Q 024315 65 ISGNNLCQNSTVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (269)
Q Consensus 65 ~~gagmi~~~~~~~~~~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~ 143 (269)
-.|+.|+.. .++++.+ ......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..
T Consensus 9 ~~~~~~l~~------~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~ 81 (355)
T 1z47_A 9 HHGSMTIEF------VGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-RPTKGDVWIGGKRVTD 81 (355)
T ss_dssp --CCEEEEE------EEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTT
T ss_pred cCCCceEEE------EEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECCc
Confidence 345555543 4666666 5556678899999999999999999999999999999988 5679999999988742
Q ss_pred --ccccCCCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC
Q 024315 144 --GLNRDLSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML 196 (269)
Q Consensus 144 --~l~~~~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll 196 (269)
..++.++|..|+. .+++.. ...+...+...++.. .+..+|+++++| ..+++++
T Consensus 82 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 82 LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 1122333333321 111110 012233444555533 244567888888 6999999
Q ss_pred CCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.++++ +++|||+..++...++.+.+.++
T Consensus 162 ~~P~l--LLLDEP~s~LD~~~r~~l~~~l~ 189 (355)
T 1z47_A 162 PRPQV--LLFDEPFAAIDTQIRRELRTFVR 189 (355)
T ss_dssp TCCSE--EEEESTTCCSSHHHHHHHHHHHH
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999 99999999999988887665443
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.65 E-value=2.2e-16 Score=140.08 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=101.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---c---ccccCCCCC-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---H---GLNRDLSFK- 152 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~---~l~~~~g~~- 152 (269)
.++.+.+......++++|.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++. . .+++.++|.
T Consensus 28 ~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~ 106 (263)
T 2olj_A 28 HQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-DFDEGEIIIDGINLKAKDTNLNKVREEVGMVF 106 (263)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEESSSTTCCHHHHHHHEEEEC
T ss_pred EeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC-CCCCcEEEECCEECCCccccHHHHhCcEEEEe
Confidence 46677776666788899999999999999999999999999999988 467899999998763 1 011112221
Q ss_pred ----------hhhHHHHHH----------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315 153 ----------AEDRVENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (269)
Q Consensus 153 ----------~~~~~~~~~----------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld 207 (269)
..+...... ....+...+...++.. .+..+++++++| ..+++++.++++ +++|
T Consensus 107 Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l--llLD 184 (263)
T 2olj_A 107 QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI--MLFD 184 (263)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEE
T ss_pred CCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE--EEEe
Confidence 111111100 0012233455555533 234567777777 699999999999 9999
Q ss_pred CChhHHHhcChhhHHHHHh
Q 024315 208 VPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 208 ~p~~~l~~R~~k~l~~~~r 226 (269)
||+..++....+.+.+.++
T Consensus 185 EPts~LD~~~~~~~~~~l~ 203 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMK 203 (263)
T ss_dssp STTTTSCHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999999988887665543
No 13
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.64 E-value=5.6e-16 Score=133.49 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=99.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChh-----
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE----- 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~----- 154 (269)
.++++.+.. ...+.+++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++. ..+..++|.+|
T Consensus 14 ~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~-~~~~~i~~v~q~~~~~ 90 (214)
T 1sgw_A 14 RDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPIT-KVKGKIFFLPEEIIVP 90 (214)
T ss_dssp EEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGG-GGGGGEEEECSSCCCC
T ss_pred EEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEhh-hhcCcEEEEeCCCcCC
Confidence 456666666 6788899999999999999999999999999999988 467899999998753 11111222111
Q ss_pred ---hHHHHHHH----------HHHHHHHHHhCCcce---eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 155 ---DRVENIRR----------IGEVAKLFADAGVIC---IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 155 ---~~~~~~~~----------l~~~a~~~~~~g~~~---iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
...+++.. ...+...+...++.. .+...++++++| ..+++++.++++ +++|||+..++...
T Consensus 91 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l--llLDEPts~LD~~~ 168 (214)
T 1sgw_A 91 RKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAIDEDS 168 (214)
T ss_dssp TTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTSCTTT
T ss_pred CCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCcCCCHHH
Confidence 11111111 011223344445432 233457777777 689999999999 99999999999999
Q ss_pred hhhHHHHHh
Q 024315 218 PKGLYKLAR 226 (269)
Q Consensus 218 ~k~l~~~~r 226 (269)
.+.+.+.++
T Consensus 169 ~~~l~~~l~ 177 (214)
T 1sgw_A 169 KHKVLKSIL 177 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888766554
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.63 E-value=3.4e-16 Score=138.70 Aligned_cols=144 Identities=21% Similarity=0.226 Sum_probs=101.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----------------
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---------------- 143 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---------------- 143 (269)
.++++.++.....+++++.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T 1b0u_A 10 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVADKNQL 88 (262)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEESCHHHH
T ss_pred eeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEccccccccccccccChhhH
Confidence 46677776667788899999999999999999999999999999988 4678999999987641
Q ss_pred -ccccCCCCChhh--------HHHHHHH-------------HHHHHHHHHhCCccee-----eccCChHHHHH-HHHHHh
Q 024315 144 -GLNRDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVICI-----ACLISPYRKDR-DACRSM 195 (269)
Q Consensus 144 -~l~~~~g~~~~~--------~~~~~~~-------------l~~~a~~~~~~g~~~i-----v~~~~~~~~~r-~~ar~l 195 (269)
.++..++|.+|+ -.+++.. ...+...+...++... +...|+++++| ..++++
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL 168 (262)
T 1b0u_A 89 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 168 (262)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 011112222111 1111110 0122334555555332 34467777777 699999
Q ss_pred CCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 196 l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+.++++ +++|||+..++....+.+.+.++
T Consensus 169 ~~~p~l--llLDEPts~LD~~~~~~~~~~l~ 197 (262)
T 1b0u_A 169 AMEPDV--LLFDEPTSALDPELVGEVLRIMQ 197 (262)
T ss_dssp HTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred hcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 999999 99999999999988887665543
No 15
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.63 E-value=2.6e-16 Score=140.53 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=101.5
Q ss_pred cceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCC
Q 024315 80 TNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~ 152 (269)
.++++.+.. ....+++++++++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. .+++.++|.
T Consensus 11 ~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v 89 (275)
T 3gfo_A 11 EELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL-KPSSGRILFDNKPIDYSRKGIMKLRESIGIV 89 (275)
T ss_dssp EEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCCSHHHHHHHHHSEEEE
T ss_pred EEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeEEEECCEECCcccccHHHHhCcEEEE
Confidence 466666643 44778899999999999999999999999999999988 4679999999988731 122233333
Q ss_pred hhhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 153 AEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 153 ~~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
+|+. .+++.. ...+...+...++.. .+..+|+++++| .++++++.++++ +++
T Consensus 90 ~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l--LlL 167 (275)
T 3gfo_A 90 FQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV--LIL 167 (275)
T ss_dssp CSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred EcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 3211 111110 012233444555533 244567777777 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++....+.+.+.++
T Consensus 168 DEPts~LD~~~~~~i~~~l~ 187 (275)
T 3gfo_A 168 DEPTAGLDPMGVSEIMKLLV 187 (275)
T ss_dssp ECTTTTCCHHHHHHHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHH
Confidence 99999999988887665543
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.63 E-value=6.6e-16 Score=133.73 Aligned_cols=144 Identities=23% Similarity=0.184 Sum_probs=101.1
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cc-cCCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN-RDLSF 151 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~-~~~g~ 151 (269)
.++++.+......+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++... ++ ..++|
T Consensus 8 ~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 86 (224)
T 2pcj_A 8 ENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD-APTEGKVFLEGKEVDYTNEKELSLLRNRKLGF 86 (224)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS-CCSEEEEEETTEECCSSCHHHHHHHHHHHEEE
T ss_pred EeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHHHHhCcEEE
Confidence 46667776666788899999999999999999999999999999988 46789999999876421 11 11222
Q ss_pred Ch-----------hhHHHHHH---------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 152 KA-----------EDRVENIR---------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 152 ~~-----------~~~~~~~~---------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
.+ .+...... ....+...+...++.. .+...|+++++| ..+++++.++++ +++
T Consensus 87 v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llL 164 (224)
T 2pcj_A 87 VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL--LFA 164 (224)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE--EEE
T ss_pred EecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 21 11111100 0012233455555533 234567777777 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++....+.+.+.++
T Consensus 165 DEPt~~LD~~~~~~~~~~l~ 184 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFL 184 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999988887665543
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.63 E-value=9.3e-16 Score=135.53 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=101.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChh--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE-- 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~-- 154 (269)
.++++.+......+.+++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++... +++.++|.+|
T Consensus 19 ~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~ 97 (256)
T 1vpl_A 19 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISYLPEEA 97 (256)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEEECTTC
T ss_pred EEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCccHHHHhhcEEEEcCCC
Confidence 46677776667788899999999999999999999999999999988 46789999999876421 1122222222
Q ss_pred ---------hHHHHHHHH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 155 ---------DRVENIRRI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 155 ---------~~~~~~~~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
+........ ..+...+...++.. .+...|+++++| ..+++++.++++ +++|||+.
T Consensus 98 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--llLDEPts 175 (256)
T 1vpl_A 98 GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AILDEPTS 175 (256)
T ss_dssp CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EEEESTTT
T ss_pred CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcc
Confidence 211111100 11223344445432 234567777777 699999999999 99999999
Q ss_pred HHHhcChhhHHHHHh
Q 024315 212 VCEARDPKGLYKLAR 226 (269)
Q Consensus 212 ~l~~R~~k~l~~~~r 226 (269)
.++...++.+.+.++
T Consensus 176 ~LD~~~~~~l~~~l~ 190 (256)
T 1vpl_A 176 GLDVLNAREVRKILK 190 (256)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 999998888665544
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.63 E-value=9.8e-16 Score=141.71 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=102.2
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED-- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~-- 155 (269)
.++++.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. ..++.++|..|+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (362)
T 2it1_A 7 ENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-KPTSGKIYFDEKDVTELPPKDRNVGLVFQNWA 85 (362)
T ss_dssp EEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEEEECTTCC
T ss_pred EeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHhHCcEEEEecCcc
Confidence 45666666666788899999999999999999999999999999988 4679999999988742 111222322221
Q ss_pred ------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 156 ------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 156 ------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
-.+++.. ...+...+...++.. .+..+|+++++| ..+++++.++++ +++|||+..
T Consensus 86 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDEP~s~ 163 (362)
T 2it1_A 86 LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV--LLLDEPLSN 163 (362)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEESGGGG
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECcccc
Confidence 0111110 012233444455533 244567888888 699999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++...++.+.+.++
T Consensus 164 LD~~~r~~l~~~l~ 177 (362)
T 2it1_A 164 LDALLRLEVRAELK 177 (362)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998887665443
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.63 E-value=7.1e-16 Score=142.63 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=101.2
Q ss_pred cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccC
Q 024315 80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRD 148 (269)
Q Consensus 80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~ 148 (269)
.++++.+. .+.+.+++||.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++.. .+++.
T Consensus 28 ~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G~I~i~G~~i~~~~~~~~~~~r~~ 106 (366)
T 3tui_C 28 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESELTKARRQ 106 (366)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECSSCCHHHHHHHHTT
T ss_pred EeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHHHhCc
Confidence 35555552 356788999999999999999999999999999999988 5679999999998752 11233
Q ss_pred CCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 149 LSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 149 ~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
++|..|+. .+++.. ...+..++...++.. .+..+|+++++| .++|+++.+|++
T Consensus 107 Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l-- 184 (366)
T 3tui_C 107 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV-- 184 (366)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE--
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence 33333211 111110 012223344445432 344567888888 699999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+.+.++
T Consensus 185 LLlDEPTs~LD~~~~~~i~~lL~ 207 (366)
T 3tui_C 185 LLCDQATSALDPATTRSILELLK 207 (366)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCCHHHHHHHHHHHH
Confidence 99999999999998887665544
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.63 E-value=7.5e-16 Score=142.33 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=101.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED-- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~-- 155 (269)
.++++.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. ..++.++|..|+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (359)
T 2yyz_A 7 VNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-KPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA 85 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEEEECSSCC
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC-CCCccEEEECCEECCCCChhhCcEEEEecCcc
Confidence 46677777777888999999999999999999999999999999988 5679999999988742 111222222221
Q ss_pred ------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 156 ------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 156 ------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
-.+++.. ...+...+...++.. .+..+|+++++| ..+++++.++++ +++|||+..
T Consensus 86 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l--LLLDEP~s~ 163 (359)
T 2yyz_A 86 LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV--LLFDEPLSN 163 (359)
T ss_dssp CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEESTTTT
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECCccc
Confidence 0111110 012233444455533 244567888887 699999999999 999999999
Q ss_pred HHhcChhhHHHHH
Q 024315 213 CEARDPKGLYKLA 225 (269)
Q Consensus 213 l~~R~~k~l~~~~ 225 (269)
++...++.+.+.+
T Consensus 164 LD~~~r~~l~~~l 176 (359)
T 2yyz_A 164 LDANLRMIMRAEI 176 (359)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9998887766544
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.63 E-value=5.8e-16 Score=142.82 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=101.7
Q ss_pred cceEEeeCcee--eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCC
Q 024315 80 TNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLS 150 (269)
Q Consensus 80 ~~~~~~~~~v~--~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g 150 (269)
.++++.+.... ..++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. ..++.++
T Consensus 7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig 85 (353)
T 1oxx_K 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVPPEDRKIG 85 (353)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSCGGGSCEE
T ss_pred EeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECcccccccCChhhCCEE
Confidence 45666666555 778899999999999999999999999999999988 5679999999987632 1122233
Q ss_pred CChhhH--------HHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 151 FKAEDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 151 ~~~~~~--------~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
|..|+. .+++. ....+...+...++.. .+..+|+++++| ..+++++.++++ ++
T Consensus 86 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l--LL 163 (353)
T 1oxx_K 86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL--LL 163 (353)
T ss_dssp EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EE
Confidence 222211 11110 0112233444455533 244567888888 699999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|||+..++...++.+.+.++
T Consensus 164 LDEP~s~LD~~~r~~l~~~l~ 184 (353)
T 1oxx_K 164 LDEPFSNLDARMRDSARALVK 184 (353)
T ss_dssp EESTTTTSCGGGHHHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHH
Confidence 999999999999888665543
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.62 E-value=7e-16 Score=134.55 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=98.3
Q ss_pred ceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----c----ccC
Q 024315 81 NILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRD 148 (269)
Q Consensus 81 ~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l----~~~ 148 (269)
++++.+. .....+++++.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++... + +..
T Consensus 6 ~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 84 (235)
T 3tif_A 6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTKIRRDK 84 (235)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred EEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHhhcc
Confidence 4555543 245678899999999999999999999999999999988 56799999999876421 0 011
Q ss_pred CCCChhh--------HHHHHH---------------HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCC
Q 024315 149 LSFKAED--------RVENIR---------------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 149 ~g~~~~~--------~~~~~~---------------~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~ 199 (269)
++|.+|+ -.+++. ....+...+...++.. .+..+|+++++| ..+++++.+|
T Consensus 85 i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p 164 (235)
T 3tif_A 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164 (235)
T ss_dssp EEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2221111 011110 0112233444445432 245567788887 6999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++ +++|||+..++....+.+.+.++
T Consensus 165 ~l--lllDEPts~LD~~~~~~i~~~l~ 189 (235)
T 3tif_A 165 PI--ILADQPTWALDSKTGEKIMQLLK 189 (235)
T ss_dssp SE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred CE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 99 99999999999988888665543
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.62 E-value=9.7e-16 Score=142.25 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=101.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCC
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSF 151 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~ 151 (269)
.++++.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. ..++.++|
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~ 85 (372)
T 1g29_1 7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPPKDRDIAM 85 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC-CCCccEEEECCEECccccccccCCHhHCCEEE
Confidence 46677777777888999999999999999999999999999999988 4679999999987632 11122332
Q ss_pred ChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 152 KAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 152 ~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
..|+. .+++.. ...+...+...++.. .+..+|+++++| ..+++++.++++ +++
T Consensus 86 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLL 163 (372)
T 1g29_1 86 VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV--FLM 163 (372)
T ss_dssp ECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE--EEE
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 22210 111110 011223333444432 344567888888 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHH
Q 024315 207 DVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~ 225 (269)
|||+..++...++.+...+
T Consensus 164 DEP~s~LD~~~r~~l~~~l 182 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAEL 182 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHH
Confidence 9999999998887766544
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.62 E-value=9.5e-16 Score=142.28 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=101.3
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhHH
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDRV 157 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~~ 157 (269)
.++.+.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. ..++.++|..|+..
T Consensus 15 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 93 (372)
T 1v43_A 15 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 93 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEEC---
T ss_pred EEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCCCChhhCcEEEEecCcc
Confidence 46777777777888999999999999999999999999999999988 5679999999988742 11122333332210
Q ss_pred --------HHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315 158 --------ENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (269)
Q Consensus 158 --------~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~ 212 (269)
+++. ....+...+...++.. .+..+|+++++| ..+++++.++++ +++|||+..
T Consensus 94 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDEP~s~ 171 (372)
T 1v43_A 94 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LLMDEPLSN 171 (372)
T ss_dssp ---CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EEEESTTTT
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcc
Confidence 1110 0012233444445433 233456666776 799999999999 999999999
Q ss_pred HHhcChhhHHHHHh
Q 024315 213 CEARDPKGLYKLAR 226 (269)
Q Consensus 213 l~~R~~k~l~~~~r 226 (269)
++...++.+.+.++
T Consensus 172 LD~~~r~~l~~~l~ 185 (372)
T 1v43_A 172 LDAKLRVAMRAEIK 185 (372)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99988877664443
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.62 E-value=8.5e-16 Score=134.35 Aligned_cols=144 Identities=15% Similarity=0.199 Sum_probs=98.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++++.+......+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++... .+..++|.+|
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 88 (240)
T 1ji0_A 10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGIALVPE 88 (240)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTEEEECS
T ss_pred EeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCCHHHHHhCCEEEEec
Confidence 46677776666788899999999999999999999999999999988 46799999999876421 0111222111
Q ss_pred h--------HHHHHH----------HH-HHHHHHHHhCC-c----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315 155 D--------RVENIR----------RI-GEVAKLFADAG-V----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (269)
Q Consensus 155 ~--------~~~~~~----------~l-~~~a~~~~~~g-~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p 209 (269)
+ -.+++. .. ..+..++...+ + ...+...++++++| ..+++++.++++ +++|||
T Consensus 89 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--llLDEP 166 (240)
T 1ji0_A 89 GRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--LMMDEP 166 (240)
T ss_dssp SCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--EEEECT
T ss_pred CCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCC
Confidence 1 001110 00 01111222221 2 22344567777777 699999999999 999999
Q ss_pred hhHHHhcChhhHHHHHh
Q 024315 210 LQVCEARDPKGLYKLAR 226 (269)
Q Consensus 210 ~~~l~~R~~k~l~~~~r 226 (269)
+..++....+.+.+.++
T Consensus 167 ts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp TTTCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 99999998888765544
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.61 E-value=7.2e-16 Score=137.86 Aligned_cols=144 Identities=18% Similarity=0.156 Sum_probs=101.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c----ccccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~----~l~~~~g~~~ 153 (269)
.++++.+......++++|.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++. . .+++.++|.+
T Consensus 25 ~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~ 103 (279)
T 2ihy_A 25 DQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE-PATSGTVNLFGKMPGKVGYSAETVRQHIGFVS 103 (279)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTBCCC---CCHHHHHTTEEEEC
T ss_pred EeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCeEEEECCEEcccccCCHHHHcCcEEEEE
Confidence 46666666666788899999999999999999999999999999988 467899999997764 1 1122233332
Q ss_pred hhH----------HHHHH----------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 154 EDR----------VENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 154 ~~~----------~~~~~----------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
|+. .+++. ....+...+...++.. .+..+++++++| ..+++++.++++
T Consensus 104 Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l- 182 (279)
T 2ihy_A 104 HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV- 182 (279)
T ss_dssp HHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE-
T ss_pred cCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCE-
Confidence 221 01110 0012233444555532 234567777777 699999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHh
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+.+.++
T Consensus 183 -LlLDEPts~LD~~~~~~l~~~l~ 205 (279)
T 2ihy_A 183 -LILDEPAAGLDFIARESLLSILD 205 (279)
T ss_dssp -EEEESTTTTCCHHHHHHHHHHHH
T ss_pred -EEEeCCccccCHHHHHHHHHHHH
Confidence 99999999999998888665543
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.61 E-value=1.1e-15 Score=140.72 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=101.5
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED-- 155 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~-- 155 (269)
.++++.+... ..++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.. ..++.++|..|+
T Consensus 5 ~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~ 82 (348)
T 3d31_A 5 ESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS 82 (348)
T ss_dssp EEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred EEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC-CCCCcEEEECCEECCCCchhhCcEEEEecCcc
Confidence 4566666655 788899999999999999999999999999999988 5679999999988742 111223332221
Q ss_pred ------HHHHHHH---H------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 156 ------RVENIRR---I------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 156 ------~~~~~~~---l------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
-.+++.. . ..+...+...++.. .+..+|+++++| ..+++++.++++ +++|||+..++.
T Consensus 83 l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l--LLLDEP~s~LD~ 160 (348)
T 3d31_A 83 LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLSALDP 160 (348)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSSTTSCH
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECccccCCH
Confidence 1122111 0 12333444445432 244567888888 699999999999 999999999999
Q ss_pred cChhhHHHHHh
Q 024315 216 RDPKGLYKLAR 226 (269)
Q Consensus 216 R~~k~l~~~~r 226 (269)
..++.+...++
T Consensus 161 ~~~~~l~~~l~ 171 (348)
T 3d31_A 161 RTQENAREMLS 171 (348)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887665443
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.61 E-value=1.1e-15 Score=134.87 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=101.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~ 154 (269)
.++++.+......+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++... .+..++|.+|
T Consensus 11 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 89 (257)
T 1g6h_A 11 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHYGIVRTFQ 89 (257)
T ss_dssp EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHTEEECCC
T ss_pred eeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhCCEEEEcc
Confidence 46777776677788999999999999999999999999999999988 46789999999876421 1112222222
Q ss_pred hH--------HHHHH-------------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC
Q 024315 155 DR--------VENIR-------------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML 196 (269)
Q Consensus 155 ~~--------~~~~~-------------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll 196 (269)
+. .+++. ....+...+...++.. .+...++++++| ..+++++
T Consensus 90 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~ 169 (257)
T 1g6h_A 90 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM 169 (257)
T ss_dssp CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred CCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHH
Confidence 10 01100 0012223444455532 234567777777 6999999
Q ss_pred CCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.++++ +++|||+..++....+.+.+.++
T Consensus 170 ~~p~l--llLDEPts~LD~~~~~~l~~~l~ 197 (257)
T 1g6h_A 170 TNPKM--IVMDEPIAGVAPGLAHDIFNHVL 197 (257)
T ss_dssp TCCSE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred cCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 99999 99999999999998888765544
No 29
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.61 E-value=1.6e-15 Score=134.77 Aligned_cols=144 Identities=20% Similarity=0.263 Sum_probs=100.4
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----ccc--------
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR-------- 147 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l~~-------- 147 (269)
.++++.+......+++++++.+|++++|+||||||||||+++|++++ .+.+|.|.++|.++... +++
T Consensus 15 ~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~ 93 (266)
T 4g1u_C 15 SHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQPKALARTRAVMRQY 93 (266)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEETTEETTTSCHHHHHHHEEEECSC
T ss_pred EeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCCHHHHhheEEEEecC
Confidence 56777777788889999999999999999999999999999999988 46789999999987521 110
Q ss_pred -CC--CCChhhHHHHH-------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCC------CCCccEEEE
Q 024315 148 -DL--SFKAEDRVENI-------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP------EGDFIEVFM 206 (269)
Q Consensus 148 -~~--g~~~~~~~~~~-------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~------~~~~~~i~l 206 (269)
.+ .++..+..... .....+...+...++.. .+..+|+++++| .++++++. ++++ +++
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l--Lll 171 (266)
T 4g1u_C 94 SELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW--LFL 171 (266)
T ss_dssp CCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE--EEE
T ss_pred CccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE--EEE
Confidence 01 11111111000 00012223344444422 244567777777 68999998 8888 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++....+.+.+.++
T Consensus 172 DEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHH
T ss_pred eCccccCCHHHHHHHHHHHH
Confidence 99999999988877665543
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.60 E-value=5.2e-16 Score=140.51 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=96.1
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
.++++.+. .....++++|.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++.. .++..++|.+|
T Consensus 57 ~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q 135 (306)
T 3nh6_A 57 ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-DISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135 (306)
T ss_dssp EEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-CCSEEEEEETTEETTSBCHHHHHHTEEEECS
T ss_pred EEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCcEEEECCEEcccCCHHHHhcceEEEec
Confidence 34555552 334567789999999999999999999999999999988 5679999999998753 12222333222
Q ss_pred h-------HHHHH------------HHHHHHH---HHHHh--CCccee----eccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 155 D-------RVENI------------RRIGEVA---KLFAD--AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 155 ~-------~~~~~------------~~l~~~a---~~~~~--~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
+ ..+++ ....+.+ ..... .|+... ...+++++++| .++|+++.++++ ++
T Consensus 136 ~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i--Ll 213 (306)
T 3nh6_A 136 DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI--IL 213 (306)
T ss_dssp SCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EE
T ss_pred CCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE--EE
Confidence 1 11111 1111111 11111 122221 23457777777 699999999999 89
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|||+..++....+.+.+.++
T Consensus 214 LDEPts~LD~~~~~~i~~~l~ 234 (306)
T 3nh6_A 214 LDEATSALDTSNERAIQASLA 234 (306)
T ss_dssp EECCSSCCCHHHHHHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHH
Confidence 999999999988877665544
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.59 E-value=5.7e-15 Score=129.23 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=98.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR- 156 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~- 156 (269)
.++++.+..+ .+++++.+++ ++++|+||||||||||+++|+|.+ .+.+|.|.++|.++.. ..++.++|.+|+.
T Consensus 5 ~~l~~~y~~~--l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (240)
T 2onk_A 5 VRAEKRLGNF--RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVPQDYA 80 (240)
T ss_dssp EEEEEEETTE--EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCCSSCC
T ss_pred EEEEEEeCCE--EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCchhhCcEEEEcCCCc
Confidence 3555665543 7888999999 999999999999999999999988 4678999999987642 1222334333311
Q ss_pred -------HHHHH----------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 157 -------VENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 157 -------~~~~~----------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
.+++. ....+...+...++.. .+...|+++++| ..+++++.++++ +++|||+..++
T Consensus 81 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l--llLDEPts~LD 158 (240)
T 2onk_A 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLSAVD 158 (240)
T ss_dssp CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTSSCC
T ss_pred cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCC
Confidence 11110 0112334455555532 244567777777 699999999999 89999999999
Q ss_pred hcChhhHHHHHh
Q 024315 215 ARDPKGLYKLAR 226 (269)
Q Consensus 215 ~R~~k~l~~~~r 226 (269)
...++.+.+.++
T Consensus 159 ~~~~~~~~~~l~ 170 (240)
T 2onk_A 159 LKTKGVLMEELR 170 (240)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988887665543
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.59 E-value=9.6e-16 Score=134.20 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=96.5
Q ss_pred ceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315 81 NILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~ 155 (269)
++++.+ ......+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++.. .++..++|.+|+
T Consensus 6 ~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 84 (243)
T 1mv5_A 6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIGFVSQD 84 (243)
T ss_dssp EEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCCEECCS
T ss_pred EEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhhEEEEcCC
Confidence 455555 3344567889999999999999999999999999999988 4668999999987642 223333333221
Q ss_pred H-------HHHHHH-------HHHHHHHHHhCCcce---------------eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 156 R-------VENIRR-------IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 156 ~-------~~~~~~-------l~~~a~~~~~~g~~~---------------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
. .+++.. -.++...+...++.. .....++++++| ..+++++.++++ ++
T Consensus 85 ~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l--ll 162 (243)
T 1mv5_A 85 SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI--LM 162 (243)
T ss_dssp SCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EE
T ss_pred CccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 1 111100 001111122222211 123457777777 699999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|||+..++....+.+.+.++
T Consensus 163 LDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 163 LDEATASLDSESESMVQKALD 183 (243)
T ss_dssp EECCSCSSCSSSCCHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHH
Confidence 999999999999888776554
No 33
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.59 E-value=4.5e-15 Score=131.67 Aligned_cols=144 Identities=18% Similarity=0.263 Sum_probs=99.1
Q ss_pred cceEEeeC--c---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-ccccCCCCCh
Q 024315 80 TNILWHKN--S---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~--~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-~l~~~~g~~~ 153 (269)
.++++.+. . ....+++++.+++|++++|+|+||||||||+++|+|++ .+.+|.|.++|.++.. .++..++|.+
T Consensus 6 ~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~i~~v~ 84 (266)
T 2yz2_A 6 VNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-EPTSGDVLYDGERKKGYEIRRNIGIAF 84 (266)
T ss_dssp EEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCHHHHGGGEEEEC
T ss_pred EEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEECchHHhhhhEEEEe
Confidence 35556554 3 45678899999999999999999999999999999988 4678999999987531 1111122222
Q ss_pred hh---------HHHHHHH-----------HHHHHHHHHhCCcc--e----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315 154 ED---------RVENIRR-----------IGEVAKLFADAGVI--C----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (269)
Q Consensus 154 ~~---------~~~~~~~-----------l~~~a~~~~~~g~~--~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l 206 (269)
|+ -.+++.. ...+...+...++. . .+...++++++| ..+++++.++++ +++
T Consensus 85 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--llL 162 (266)
T 2yz2_A 85 QYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI--LIL 162 (266)
T ss_dssp SSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred ccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 21 0111110 01123344445554 2 234567777777 699999999999 999
Q ss_pred eCChhHHHhcChhhHHHHHh
Q 024315 207 DVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 207 d~p~~~l~~R~~k~l~~~~r 226 (269)
|||+..++....+.+.+.++
T Consensus 163 DEPts~LD~~~~~~l~~~l~ 182 (266)
T 2yz2_A 163 DEPLVGLDREGKTDLLRIVE 182 (266)
T ss_dssp ESTTTTCCHHHHHHHHHHHH
T ss_pred cCccccCCHHHHHHHHHHHH
Confidence 99999999998888765543
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.58 E-value=2e-15 Score=134.37 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=97.2
Q ss_pred cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315 80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~ 152 (269)
.++.+.+.. ....++++|.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++.. .++..++|.
T Consensus 20 ~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 98 (271)
T 2ixe_A 20 QDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-QPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98 (271)
T ss_dssp EEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHHHHHEEEE
T ss_pred EEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEcccCCHHHHhccEEEE
Confidence 455555543 45567789999999999999999999999999999988 4678999999987642 011111111
Q ss_pred hhh-------HHHHHH--------------HH--HHHHHHHHhC--Ccce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315 153 AED-------RVENIR--------------RI--GEVAKLFADA--GVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (269)
Q Consensus 153 ~~~-------~~~~~~--------------~l--~~~a~~~~~~--g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~ 202 (269)
+|+ ..+++. .. ..+...+... ++.. .+..+++++++| ..+++++.++++
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l- 177 (271)
T 2ixe_A 99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL- 177 (271)
T ss_dssp CSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSE-
T ss_pred ecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCE-
Confidence 110 111110 00 0011122222 2221 234567777777 699999999999
Q ss_pred EEEEeCChhHHHhcChhhHHHHHhc
Q 024315 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 203 ~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++....+.+.+.+++
T Consensus 178 -llLDEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 178 -LILDNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp -EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred -EEEECCccCCCHHHHHHHHHHHHH
Confidence 999999999999998888776654
No 35
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.58 E-value=1.6e-14 Score=121.99 Aligned_cols=157 Identities=23% Similarity=0.269 Sum_probs=96.2
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHH
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFA 171 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~ 171 (269)
+..++|++++|+|+|||||||+++.|++.+ |.++++++++... ......+........+..+........
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 98 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARA 98 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHH
Confidence 445789999999999999999999999987 4678999887531 111222333333333344434443333
Q ss_pred hCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCC--C
Q 024315 172 DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLN--C 246 (269)
Q Consensus 172 ~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~--~ 246 (269)
..+...+++.....+..++.++++.. ++..|++++|.+.+.+|..++ .++... +..+.+.++++.. +
T Consensus 99 ~~g~~viid~~~~~~~~~~~l~~~~~--~~~vv~l~~~~e~l~~Rl~~R------~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (200)
T 4eun_A 99 DAGVSTIITCSALKRTYRDVLREGPP--SVDFLHLDGPAEVIKGRMSKR------EGHFMPASLLQSQLATLEALEPDES 170 (200)
T ss_dssp HTTCCEEEEECCCCHHHHHHHTTSSS--CCEEEEEECCHHHHHHHHTTC------SCCSSCGGGHHHHHHHCCCCCTTSC
T ss_pred hcCCCEEEEchhhhHHHHHHHHHhCC--ceEEEEEeCCHHHHHHHHHhc------ccCCCCHHHHHHHHHHhCCCCCCCC
Confidence 44555555554444556666665543 345589999999999887432 222222 2222344455443 6
Q ss_pred CeEEEcCCCcCHHHHHH-HHhhc
Q 024315 247 EVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 247 e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
+++||++ . +++++.. |.++|
T Consensus 171 ~~~Id~~-~-~~~e~~~~I~~~l 191 (200)
T 4eun_A 171 GIVLDLR-Q-PPEQLIERALTWL 191 (200)
T ss_dssp EEEEETT-S-CHHHHHHHHHHHH
T ss_pred eEEEECC-C-CHHHHHHHHHHHH
Confidence 8999995 3 7888877 77775
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.56 E-value=7.6e-15 Score=128.92 Aligned_cols=143 Identities=22% Similarity=0.242 Sum_probs=93.8
Q ss_pred ceEEee--CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~--~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
++++.+ ......+.+++.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++.. .++..++|.+|
T Consensus 12 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q 90 (247)
T 2ff7_A 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQVGVVLQ 90 (247)
T ss_dssp EEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred EEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhcEEEEeC
Confidence 445555 2344567789999999999999999999999999999988 4678999999987642 11111111111
Q ss_pred h-------HHHHHHH------HHHHHHHHHhCCcc-----------e----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 155 D-------RVENIRR------IGEVAKLFADAGVI-----------C----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 155 ~-------~~~~~~~------l~~~a~~~~~~g~~-----------~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
+ ..+++.. ...+...+...++. . ....+++++++| ..+++++.++++ ++
T Consensus 91 ~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l--ll 168 (247)
T 2ff7_A 91 DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI--LI 168 (247)
T ss_dssp SCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred CCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 0 1111100 00011111111211 1 123467777777 699999999999 99
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|||+..++....+.+.+.++
T Consensus 169 LDEPts~LD~~~~~~i~~~l~ 189 (247)
T 2ff7_A 169 FDEATSALDYESEHVIMRNMH 189 (247)
T ss_dssp ECCCCSCCCHHHHHHHHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHH
Confidence 999999999998888766554
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.56 E-value=8.5e-15 Score=128.73 Aligned_cols=146 Identities=18% Similarity=0.097 Sum_probs=97.7
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECCeecCcc----c-ccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG----L-NRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g~~~~~~----l-~~~~g~~~ 153 (269)
.++++.+......+++++.+++|++++|+||||||||||+++|++.+ ..+.+|.|.++|.++... . +..++|.+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~ 86 (250)
T 2d2e_A 7 RDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF 86 (250)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCC
T ss_pred EeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEec
Confidence 46677776666788899999999999999999999999999999972 245689999999886421 1 11233332
Q ss_pred hhH--------HHHHHH---------------HHHHHHHHHhCCc-ce----eecc-CChHHHHH-HHHHHhCCCCCccE
Q 024315 154 EDR--------VENIRR---------------IGEVAKLFADAGV-IC----IACL-ISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 154 ~~~--------~~~~~~---------------l~~~a~~~~~~g~-~~----iv~~-~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
|+. .+++.. ...+...+...++ .. .+.. .++++++| ..+++++.++++
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l-- 164 (250)
T 2d2e_A 87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTY-- 164 (250)
T ss_dssp CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSE--
T ss_pred cCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCE--
Confidence 210 111100 0112233444444 12 2233 66677777 699999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..++....+.+.+.+++
T Consensus 165 llLDEPts~LD~~~~~~l~~~l~~ 188 (250)
T 2d2e_A 165 AVLDETDSGLDIDALKVVARGVNA 188 (250)
T ss_dssp EEEECGGGTTCHHHHHHHHHHHHH
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999988887766543
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.56 E-value=1.8e-14 Score=127.72 Aligned_cols=142 Identities=17% Similarity=0.095 Sum_probs=101.3
Q ss_pred ceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-cccCCC-CChh
Q 024315 81 NILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLS-FKAE 154 (269)
Q Consensus 81 ~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-l~~~~g-~~~~ 154 (269)
++++.+.. ....+.+++.++ |++++|+||||||||||+++|++.+ +.+|.|.++|.++... .++.++ |.+|
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~~v~Q 82 (263)
T 2pjz_A 6 NVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYSTNLPE 82 (263)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEECCGG
T ss_pred EEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEEEeCC
Confidence 45555544 556788899999 9999999999999999999999987 5689999999876421 123345 5554
Q ss_pred hH------HHHHHHH--------HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 155 DR------VENIRRI--------GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 155 ~~------~~~~~~l--------~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
+. .+++... ..+...+...++. . .+..+++++++| ..+++++.++++ +++|||+..++
T Consensus 83 ~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPts~LD 160 (263)
T 2pjz_A 83 AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI--VGLDEPFENVD 160 (263)
T ss_dssp GSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE--EEEECTTTTCC
T ss_pred CCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCccccC
Confidence 31 1222111 1223344455554 2 234567777777 699999999999 99999999999
Q ss_pred hcChhhHHHHHhc
Q 024315 215 ARDPKGLYKLARE 227 (269)
Q Consensus 215 ~R~~k~l~~~~r~ 227 (269)
...++.+.+.+++
T Consensus 161 ~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 161 AARRHVISRYIKE 173 (263)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888777664
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.54 E-value=3.3e-15 Score=139.46 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=98.8
Q ss_pred cceEEee--CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315 80 TNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~--~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~ 153 (269)
.++++.+ ......++++|.+++|++++|+||||||||||+++|++++. .+|.|.++|.++.. .+++.++|..
T Consensus 23 ~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~ 100 (390)
T 3gd7_A 23 KDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIP 100 (390)
T ss_dssp EEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEES
T ss_pred EEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEc
Confidence 4566665 44566788899999999999999999999999999999885 57999999988752 1122233222
Q ss_pred hh-------HHHHHHH-----HHHHHHHHHhCCccee----ec-----------cCChHHHHH-HHHHHhCCCCCccEEE
Q 024315 154 ED-------RVENIRR-----IGEVAKLFADAGVICI----AC-----------LISPYRKDR-DACRSMLPEGDFIEVF 205 (269)
Q Consensus 154 ~~-------~~~~~~~-----l~~~a~~~~~~g~~~i----v~-----------~~~~~~~~r-~~ar~ll~~~~~~~i~ 205 (269)
|+ ..+++.. -.++...+...++... .. .+|++++|| .++|+++.++++ ++
T Consensus 101 Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l--LL 178 (390)
T 3gd7_A 101 QKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI--LL 178 (390)
T ss_dssp CCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE--EE
T ss_pred CCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 21 1111110 0111122222333211 11 167788887 699999999999 89
Q ss_pred EeCChhHHHhcChhhHHHHHhc
Q 024315 206 MDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+|||+..++...++.+.+.+++
T Consensus 179 LDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 179 LDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp EESHHHHSCHHHHHHHHHHHHT
T ss_pred EeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999988888777664
No 40
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.54 E-value=9.4e-15 Score=129.73 Aligned_cols=146 Identities=16% Similarity=0.023 Sum_probs=100.9
Q ss_pred cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECCeecCcc----c-ccCCCCCh
Q 024315 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG----L-NRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g~~~~~~----l-~~~~g~~~ 153 (269)
.++++.+......+++++.+++|++++|+||||||||||+++|++++ ..+.+|.|.++|.++... . +..++|.+
T Consensus 24 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~ 103 (267)
T 2zu0_C 24 KDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF 103 (267)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEEC
T ss_pred EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEc
Confidence 46666666666788899999999999999999999999999999985 245689999999876420 0 11122211
Q ss_pred h-----------hHHHH----HH-----------H-HHHHHHHHHhCCcc-e----eec-cCChHHHHH-HHHHHhCCCC
Q 024315 154 E-----------DRVEN----IR-----------R-IGEVAKLFADAGVI-C----IAC-LISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 154 ~-----------~~~~~----~~-----------~-l~~~a~~~~~~g~~-~----iv~-~~~~~~~~r-~~ar~ll~~~ 199 (269)
| +.... .. . ...+...+...++. . .+. .+++++++| ..+++++.++
T Consensus 104 Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p 183 (267)
T 2zu0_C 104 QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP 183 (267)
T ss_dssp SSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCC
T ss_pred cCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCC
Confidence 1 11100 00 0 01122344445542 1 222 367777777 6999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
++ +++|||+..++....+.+.+.+++
T Consensus 184 ~l--LlLDEPts~LD~~~~~~l~~~l~~ 209 (267)
T 2zu0_C 184 EL--CILDESDSGLDIDALKVVADGVNS 209 (267)
T ss_dssp SE--EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred CE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99 999999999999998888877664
No 41
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.53 E-value=8.3e-15 Score=129.61 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=94.7
Q ss_pred cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315 80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK 152 (269)
Q Consensus 80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~ 152 (269)
.++.+.+.. ....+++++.+++|++++|+||||||||||+++|++++. + +|.|.++|.++.. .++..++|.
T Consensus 21 ~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v 98 (260)
T 2ghi_A 21 SDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIV 98 (260)
T ss_dssp EEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEE
T ss_pred EEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEE
Confidence 355555543 235677899999999999999999999999999999885 5 7999999987642 112222222
Q ss_pred hhh-------HHHHHHH------HHHHHHHHHhCCcc---------------eeeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 153 AED-------RVENIRR------IGEVAKLFADAGVI---------------CIACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 153 ~~~-------~~~~~~~------l~~~a~~~~~~g~~---------------~iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
+|+ ..+++.. ..++...+...++. ......++++++| ..+++++.++++
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-- 176 (260)
T 2ghi_A 99 PQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI-- 176 (260)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE--
T ss_pred cCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE--
Confidence 221 1111110 00111111112211 1123567777777 699999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHh
Q 024315 204 VFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
+++|||+..++....+.+.+.++
T Consensus 177 llLDEPts~LD~~~~~~i~~~l~ 199 (260)
T 2ghi_A 177 VIFDEATSSLDSKTEYLFQKAVE 199 (260)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHH
T ss_pred EEEECccccCCHHHHHHHHHHHH
Confidence 99999999999998887765554
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.51 E-value=2.1e-14 Score=140.36 Aligned_cols=145 Identities=17% Similarity=0.251 Sum_probs=98.6
Q ss_pred cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315 80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~ 153 (269)
.++++.+.. ....++.++++++|++++|+||||||||||++.|+|.+ +|.+|.|.++|.++.. .+++.+++.+
T Consensus 345 ~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b5x_A 345 KDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVRDYKLTNLRRHFALVS 423 (582)
T ss_pred EEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEhhhCCHHHHhcCeEEEc
Confidence 355555532 34567789999999999999999999999999999988 5678999999988742 2333344443
Q ss_pred hhH-------HHHHHH-------HHHHHHHHHhCCcce---------------eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315 154 EDR-------VENIRR-------IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGDFIE 203 (269)
Q Consensus 154 ~~~-------~~~~~~-------l~~~a~~~~~~g~~~---------------iv~~~~~~~~~r-~~ar~ll~~~~~~~ 203 (269)
|+. .+++.. ..++...+...++.. -....++++++| ..+|+++.++++
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i-- 501 (582)
T 3b5x_A 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV-- 501 (582)
T ss_pred CCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE--
Confidence 321 111110 001111122222211 123457777777 699999999999
Q ss_pred EEEeCChhHHHhcChhhHHHHHhc
Q 024315 204 VFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 204 i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
+++|||+..+|....+.+.+..++
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 502 LILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999998887766543
No 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.51 E-value=4.8e-15 Score=129.40 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=91.5
Q ss_pred cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec--CcccccCCCCChhh
Q 024315 80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RHGLNRDLSFKAED 155 (269)
Q Consensus 80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~--~~~l~~~~g~~~~~ 155 (269)
.++++.+. .....+++++++++|++++|+||||||||||+++|++.+. +.+|.|.++|.-- ..... -...+..+
T Consensus 7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~i~~v~Q~~~-~~~~tv~e 84 (237)
T 2cbz_A 7 RNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIKGSVAYVPQQAW-IQNDSLRE 84 (237)
T ss_dssp EEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-EEEEEEEECSCEEEECSSCC-CCSEEHHH
T ss_pred EEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEEEEcCCCc-CCCcCHHH
Confidence 35555554 3456778899999999999999999999999999999884 5689999987310 00000 00000000
Q ss_pred HH--------HHHHHHHHHHHHHHhCCc---------ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 156 RV--------ENIRRIGEVAKLFADAGV---------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 156 ~~--------~~~~~l~~~a~~~~~~g~---------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
.. +....+.+...+....+. ...+...++++++| ..+++++.++++ +++|||+..++...
T Consensus 85 nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPts~LD~~~ 162 (237)
T 2cbz_A 85 NILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSAVDAHV 162 (237)
T ss_dssp HHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EEEESTTTTSCHHH
T ss_pred HhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHH
Confidence 00 001111111111111111 11234567777777 699999999999 99999999999998
Q ss_pred hhhHHHHHh
Q 024315 218 PKGLYKLAR 226 (269)
Q Consensus 218 ~k~l~~~~r 226 (269)
.+.+.+.+.
T Consensus 163 ~~~i~~~l~ 171 (237)
T 2cbz_A 163 GKHIFENVI 171 (237)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 888877663
No 44
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.50 E-value=5.2e-14 Score=122.11 Aligned_cols=139 Identities=12% Similarity=0.148 Sum_probs=89.3
Q ss_pred cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec--Cc--ccccCCCCCh
Q 024315 80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH--GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~--~~--~l~~~~g~~~ 153 (269)
.++++.+. .....+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.-- .. .+. ..+.
T Consensus 10 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~i~~v~q~~~~~---~~tv 85 (229)
T 2pze_A 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRISFCSQFSWIM---PGTI 85 (229)
T ss_dssp EEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEECSCEEEECSSCCCC---SBCH
T ss_pred EEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCccEEEECCEEEEEecCCccc---CCCH
Confidence 34555552 345667889999999999999999999999999999988 46789999988311 00 010 0011
Q ss_pred hhHH--------HHHHHHHH---HHHHHHhCCc------ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 154 EDRV--------ENIRRIGE---VAKLFADAGV------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 154 ~~~~--------~~~~~l~~---~a~~~~~~g~------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
.+.. .......+ +...+..... .......++++++| ..+++++.++++ +++|||+..++.
T Consensus 86 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l--llLDEPts~LD~ 163 (229)
T 2pze_A 86 KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDV 163 (229)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESTTTTSCH
T ss_pred HHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECcccCCCH
Confidence 1110 00000000 0011111110 00123567777777 699999999999 999999999999
Q ss_pred cChhhHHHH
Q 024315 216 RDPKGLYKL 224 (269)
Q Consensus 216 R~~k~l~~~ 224 (269)
...+.+.+.
T Consensus 164 ~~~~~i~~~ 172 (229)
T 2pze_A 164 LTEKEIFES 172 (229)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877664
No 45
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.49 E-value=1.4e-13 Score=113.17 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=91.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--ccc-CCCCChh--hHHHHHHHHHHHHHHHHhCC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNR-DLSFKAE--DRVENIRRIGEVAKLFADAG 174 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~-~~g~~~~--~~~~~~~~l~~~a~~~~~~g 174 (269)
.+|++++|+|+|||||||+++.|++.+ |.++++++++... +.. ..++..+ .....+..+..........+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN 80 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence 568999999999999999999999976 3678898887532 110 1233322 22233333333333232334
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCC---CCCCe
Q 024315 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPP---LNCEV 248 (269)
Q Consensus 175 ~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p---~~~e~ 248 (269)
...+++.+......++.+++.. +++..|++++|.+.+.+|..++ .+.... +....+.|++| ..+++
T Consensus 81 ~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (175)
T 1knq_A 81 KVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESRLKAR------KGHFFKTQMLVTQFETLQEPGADETDVL 152 (175)
T ss_dssp SEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTS------TTCCCCHHHHHHHHHHCCCCCTTCTTEE
T ss_pred CcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhc------cCCCCchHHHHHHHHhhhCcccCCCCeE
Confidence 4455554444455555555432 2445599999999999987433 111100 11111224443 23689
Q ss_pred EEEcCCCcCHHHHHH-HHhhc
Q 024315 249 GVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 249 ~id~~~~~~~~~~~~-i~~~~ 268 (269)
+||++ .+++++.. |.++|
T Consensus 153 ~Id~~--~~~~~~~~~i~~~l 171 (175)
T 1knq_A 153 VVDID--QPLEGVVASTIEVI 171 (175)
T ss_dssp EEECS--SCHHHHHHHHHHHH
T ss_pred EEeCC--CCHHHHHHHHHHHH
Confidence 99985 57888877 77664
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.49 E-value=3.6e-14 Score=125.05 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=92.6
Q ss_pred cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---c--ccccCCCCCh
Q 024315 80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---H--GLNRDLSFKA 153 (269)
Q Consensus 80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~--~l~~~~g~~~ 153 (269)
.++++.+. .....+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.+... +. . .+.. .++.
T Consensus 8 ~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~~~-i~~v~q~~~~~~--~~tv 83 (253)
T 2nq2_C 8 ENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-RPIQGKIEVYQS-IGFVPQFFSSPF--AYSV 83 (253)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS-CCSEEEEEECSC-EEEECSCCCCSS--CCBH
T ss_pred eeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecc-EEEEcCCCccCC--CCCH
Confidence 45666665 555678889999999999999999999999999999988 466888764211 10 0 0100 1111
Q ss_pred hhHHHH-------------HHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 154 EDRVEN-------------IRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 154 ~~~~~~-------------~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
.+.... ......+...+...++.. .+...|+++++| ..+++++.++++ +++|||+..++.
T Consensus 84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--llLDEPts~LD~ 161 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL--ILLDEPTSALDL 161 (253)
T ss_dssp HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE--EEESSSSTTSCH
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCH
Confidence 111000 000011223344445432 244567777777 699999999999 999999999999
Q ss_pred cChhhHHHHHh
Q 024315 216 RDPKGLYKLAR 226 (269)
Q Consensus 216 R~~k~l~~~~r 226 (269)
...+.+.+.++
T Consensus 162 ~~~~~l~~~l~ 172 (253)
T 2nq2_C 162 ANQDIVLSLLI 172 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888765544
No 47
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.48 E-value=1.2e-14 Score=127.90 Aligned_cols=133 Identities=13% Similarity=0.122 Sum_probs=91.2
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh--------hHH
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE--------DRV 157 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~--------~~~ 157 (269)
...+++++.+++|++++|+||||||||||+++|+|.+. +. |.|.++|.++.. .++..++|.+| ...
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 35677899999999999999999999999999999884 55 999999987632 01111111111 111
Q ss_pred HHHHH-------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCC-------ccEEEEeCChhHHHhcCh
Q 024315 158 ENIRR-------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD-------FIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 158 ~~~~~-------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~-------~~~i~ld~p~~~l~~R~~ 218 (269)
+++.. ...+...+...++.. .+...++++++| ..+++++.+++ + +++|||+..++....
T Consensus 92 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l--llLDEPts~LD~~~~ 169 (249)
T 2qi9_C 92 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--LLLDEPMNSLDVAQQ 169 (249)
T ss_dssp HHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--EEESSTTTTCCHHHH
T ss_pred HHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE--EEEECCcccCCHHHH
Confidence 11110 112233444445532 244567777777 68999999988 8 999999999999988
Q ss_pred hhHHHHHh
Q 024315 219 KGLYKLAR 226 (269)
Q Consensus 219 k~l~~~~r 226 (269)
+.+.+.++
T Consensus 170 ~~l~~~l~ 177 (249)
T 2qi9_C 170 SALDKILS 177 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88765544
No 48
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.48 E-value=3.9e-13 Score=110.54 Aligned_cols=158 Identities=18% Similarity=0.104 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC-------CCCC-------hhhHHHHHHHHHHH
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-------LSFK-------AEDRVENIRRIGEV 166 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~-------~g~~-------~~~~~~~~~~l~~~ 166 (269)
.|.+|+|+|+|||||||+++.|+..+.. +.+.++.|.++..+... +.+. ....+.....+.+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHH
Confidence 3578999999999999999999998742 34555565443211110 1111 11222333333333
Q ss_pred HHHHHhCCcceeeccCCh-HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccc-ccccccCCCC
Q 024315 167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT-GIDDPYEPPL 244 (269)
Q Consensus 167 a~~~~~~g~~~iv~~~~~-~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~-~i~~~~e~p~ 244 (269)
...+...|..++++.... ....++..++.+....+..+++++|+++|.+|..++ ..+..... ...+.++.|.
T Consensus 79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r------~~~~~~~~~~~~~~~~~~~ 152 (178)
T 1qhx_A 79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR------GDRVAGMAAKQAYVVHEGV 152 (178)
T ss_dssp HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT------SSSCTTHHHHHTTGGGTTC
T ss_pred HHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh------CCcccchhhhhchhhccCC
Confidence 444445565555555432 223344455555545566689999999999987433 22221111 0112223345
Q ss_pred CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 245 NCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 245 ~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
.++++|||+ ..+++++.. |.++|
T Consensus 153 ~~d~~idt~-~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 153 EYDVEVDTT-HKESIECAWAIAAHV 176 (178)
T ss_dssp CCSEEEETT-SSCHHHHHHHHHTTC
T ss_pred CCcEEEECC-CCCHHHHHHHHHHHh
Confidence 588999995 667888887 87775
No 49
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.46 E-value=2.3e-14 Score=140.04 Aligned_cols=143 Identities=18% Similarity=0.260 Sum_probs=95.1
Q ss_pred ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315 81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE 154 (269)
Q Consensus 81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~ 154 (269)
++++.+.. ....++.++++++|++++|+||||||||||++.|.|.+ ++.+|.|.++|.++.. .+++.+++.+|
T Consensus 346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b60_A 346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASLRNQVALVSQ 424 (582)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCCCeEEECCEEccccCHHHHHhhCeEEcc
Confidence 44444431 33456679999999999999999999999999999988 5779999999988753 12222222222
Q ss_pred h-------HHHHHHH-------HHHHHHHHHhCCcc-----------e----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 155 D-------RVENIRR-------IGEVAKLFADAGVI-----------C----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 155 ~-------~~~~~~~-------l~~~a~~~~~~g~~-----------~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
+ ..+++.. -.++...+...++. . -....++++++| ..+|+++.++++ +
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~i--l 502 (582)
T 3b60_A 425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI--L 502 (582)
T ss_dssp SCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE--E
T ss_pred CCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE--E
Confidence 1 1111110 00111122222221 1 123457788777 699999999999 9
Q ss_pred EEeCChhHHHhcChhhHHHHHh
Q 024315 205 FMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++|||+..+|....+.+.+..+
T Consensus 503 llDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b60_A 503 ILDEATSALDTESERAIQAALD 524 (582)
T ss_dssp EEETTTSSCCHHHHHHHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHH
Confidence 9999999999998887765544
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.45 E-value=2.9e-14 Score=139.64 Aligned_cols=133 Identities=23% Similarity=0.247 Sum_probs=90.3
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~ 159 (269)
..++.++++++|++++|+||||||||||++.|+|.+ ++.+|.|.++|.++.. .+++.+++.+|+ ..++
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 437 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY-DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAEN 437 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS-CCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHH
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHH
Confidence 456679999999999999999999999999999988 5779999999988753 112222222211 1111
Q ss_pred HHH---------HHHHHHHHHhCC-----------ccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315 160 IRR---------IGEVAKLFADAG-----------VICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (269)
Q Consensus 160 ~~~---------l~~~a~~~~~~g-----------~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~ 214 (269)
+.. ..++...+...+ .... ....++++++| ..+|+++.++++ +++|||+..+|
T Consensus 438 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~i--lllDEpts~LD 515 (595)
T 2yl4_A 438 IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKI--LLLDEATSALD 515 (595)
T ss_dssp HHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSE--EEEECCCSSCC
T ss_pred HhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCE--EEEECcccCCC
Confidence 100 001111122222 2111 24567788877 699999999999 99999999999
Q ss_pred hcChhhHHHHHh
Q 024315 215 ARDPKGLYKLAR 226 (269)
Q Consensus 215 ~R~~k~l~~~~r 226 (269)
....+.+.+..+
T Consensus 516 ~~~~~~i~~~l~ 527 (595)
T 2yl4_A 516 AENEYLVQEALD 527 (595)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998877665544
No 51
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.44 E-value=3.7e-14 Score=138.46 Aligned_cols=133 Identities=22% Similarity=0.214 Sum_probs=89.8
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~ 159 (269)
..++.++++++|++++|+||||||||||++.|.|.+ ++.+|.|.++|.++.. .+++.+++.+|+ ..++
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 434 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN 434 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHH
Confidence 345679999999999999999999999999999988 5679999999988753 122222322221 1111
Q ss_pred HHH------HHHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 IRR------IGEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~~~------l~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+.. ..++....... |.... ....++++++| ..+|+++.++++ +++|||+..+|...
T Consensus 435 i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i--lllDEpts~LD~~~ 512 (578)
T 4a82_A 435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI--LILDEATSALDLES 512 (578)
T ss_dssp HGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE--EEEESTTTTCCHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE--EEEECccccCCHHH
Confidence 110 00111111111 22111 23457788887 699999999999 99999999999988
Q ss_pred hhhHHHHHh
Q 024315 218 PKGLYKLAR 226 (269)
Q Consensus 218 ~k~l~~~~r 226 (269)
.+.+.+..+
T Consensus 513 ~~~i~~~l~ 521 (578)
T 4a82_A 513 ESIIQEALD 521 (578)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665543
No 52
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.42 E-value=7.3e-14 Score=136.68 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=90.8
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~ 159 (269)
..++.++++++|++++|+||||||||||++.|.|.+ ++.+|.|.++|.++.. .+++.+++.+|+ .+++
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 436 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKEN 436 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHH
Confidence 346679999999999999999999999999999988 5679999999988753 122222222221 1111
Q ss_pred H------------HHHHHHH---HHHHh--CCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 I------------RRIGEVA---KLFAD--AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~------------~~l~~~a---~~~~~--~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+ ....+.+ ..+.. .|.... ....+++++|| ..+|+++.++++ +++|||+..+|...
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i--lllDEpts~LD~~~ 514 (587)
T 3qf4_A 437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV--LILDDCTSSVDPIT 514 (587)
T ss_dssp HTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE--EEEESCCTTSCHHH
T ss_pred HhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE--EEEECCcccCCHHH
Confidence 1 1111111 11111 122222 23457788887 699999999999 89999999999988
Q ss_pred hhhHHHHHh
Q 024315 218 PKGLYKLAR 226 (269)
Q Consensus 218 ~k~l~~~~r 226 (269)
.+.+.+..+
T Consensus 515 ~~~i~~~l~ 523 (587)
T 3qf4_A 515 EKRILDGLK 523 (587)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776654
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.42 E-value=8.4e-14 Score=147.33 Aligned_cols=145 Identities=16% Similarity=0.230 Sum_probs=101.2
Q ss_pred cceEEeeCceeec--------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----cccc
Q 024315 80 TNILWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNR 147 (269)
Q Consensus 80 ~~~~~~~~~v~~~--------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~ 147 (269)
..++++++.++|+ ++.++++++|+.++|+|+||||||||+++|.|++ ++.+|.|.+||.++++ .+++
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHHHHT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHHHHh
Confidence 3566666666664 3458999999999999999999999999999988 5779999999999874 3444
Q ss_pred CCCCChhhH-------HHHH--------------HHHHHHH---HHHH--hCCcceee----ccCChHHHHH-HHHHHhC
Q 024315 148 DLSFKAEDR-------VENI--------------RRIGEVA---KLFA--DAGVICIA----CLISPYRKDR-DACRSML 196 (269)
Q Consensus 148 ~~g~~~~~~-------~~~~--------------~~l~~~a---~~~~--~~g~~~iv----~~~~~~~~~r-~~ar~ll 196 (269)
.+++.+|+- ++++ ....+.+ .... ..|+...+ ...+++++|| .++|+++
T Consensus 1154 ~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp TEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence 444333321 1221 1111111 1111 12333222 3457788887 6999999
Q ss_pred CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.++++ +.+|||++.+|....+.+.+.+++
T Consensus 1234 r~~~I--LiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1234 RNPKI--LLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp SCCSE--EEEESCCCSTTSHHHHHHHHHHTT
T ss_pred hCCCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence 99999 999999999999888777776654
No 54
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=99.41 E-value=9.6e-14 Score=133.50 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=108.1
Q ss_pred Cccccccccceeeccccccccccchhhhcccccccccccccccccccce--EEeeCceeeccCcce--ecCCCeEEEEEc
Q 024315 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNI--LWHKNSVDKRDRQQL--LQQKGCVIWITG 109 (269)
Q Consensus 34 ~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~--~~~~~~v~~~~r~sl--~~~~g~~i~l~G 109 (269)
+|..++.+|+|+++|+.+|... .+.+..++|++.. +....++ .|....|....+..+ ..++|.+|||+|
T Consensus 330 ~~~y~~~~g~~i~~d~~p~~~~------~~~~iSgt~IR~~-Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~G 402 (511)
T 1g8f_A 330 MVTYLPDEDRYAPIDQIDTTKT------RTLNISGTELRRR-LRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGN 402 (511)
T ss_dssp CEEEEGGGTEEEEGGGCSSSCC------CCBCCCHHHHHHH-HHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECT
T ss_pred ceeEecccCeEEEcccCCCCcc------cccccCHHHHHHH-HhCCCCCCccccChhhHHHHHHhcccccccceEEEecc
Confidence 7888999999999999998421 1224445544331 2222333 344444554444444 467899999999
Q ss_pred CCCChHHHHHHHHHHhhcc-C-CccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHH
Q 024315 110 LSGSGKSTLACALSQALHW-R-GKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRK 187 (269)
Q Consensus 110 ~sGsGKSTla~~L~~~l~~-~-~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~ 187 (269)
++||||||++++|++.|.. . +....++|+|+ . .+ +..++..+...|..++++..++
T Consensus 403 lsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-~-----------~e-------i~~va~~~~~~G~~Vv~~~~sp--- 460 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-K-----------TE-------LLSLIQDFIGSGSGLIIPDQWE--- 460 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-C-----------HH-------HHTTHHHHHHTTCEEEESSCCC---
T ss_pred cCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-c-----------HH-------HHHHHHHHHhcCCeEEEecCCH---
Confidence 9999999999999999974 3 24566888876 1 11 2234445556677666666555
Q ss_pred HHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHh
Q 024315 188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITK 266 (269)
Q Consensus 188 ~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~ 266 (269)
+..|+++....|++++ .|..++++|||+ ..+++++.. |.+
T Consensus 461 --~~~R~~l~~g~fv~v~------------------------------------~p~~adI~IDTs-~~s~eevV~~Il~ 501 (511)
T 1g8f_A 461 --DDKDSVVGKQNVYLLD------------------------------------TSSSADIQLESA-DEPISHIVQKVVL 501 (511)
T ss_dssp --GGGGGGSCCTTEEEEE------------------------------------SSTTCSEECSST-TCCHHHHHHHHHH
T ss_pred --HHHHHHhcCCCEEEEe------------------------------------cCCCCcEEEECC-CCCHHHHHHHHHH
Confidence 2233444433443333 456678999995 678999888 877
Q ss_pred hc
Q 024315 267 WL 268 (269)
Q Consensus 267 ~~ 268 (269)
+|
T Consensus 502 ~L 503 (511)
T 1g8f_A 502 FL 503 (511)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 55
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.39 E-value=8.7e-14 Score=136.42 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=90.0
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~ 159 (269)
..++.++++++|++++|+||||||||||++.|.|.+ ++.+|.|.++|.++.. .+++.+++.+|+ ..++
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 448 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHH
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHH
Confidence 456779999999999999999999999999999988 5779999999988753 122222222221 1112
Q ss_pred HHHH------HHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 IRRI------GEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~~~l------~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+..- .++....... |.... ....+++++|| ..+|+++.++++ +++|||+..+|...
T Consensus 449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i--lllDEpts~LD~~~ 526 (598)
T 3qf4_B 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI--LILDEATSNVDTKT 526 (598)
T ss_dssp HHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE--EEECCCCTTCCHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHH
Confidence 1100 0011111111 11111 23457788887 699999999999 89999999999988
Q ss_pred hhhHHHHHh
Q 024315 218 PKGLYKLAR 226 (269)
Q Consensus 218 ~k~l~~~~r 226 (269)
.+.+.+..+
T Consensus 527 ~~~i~~~l~ 535 (598)
T 3qf4_B 527 EKSIQAAMW 535 (598)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665544
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.38 E-value=4.5e-13 Score=141.78 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=96.4
Q ss_pred ceEEeeCceeec--------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccC
Q 024315 81 NILWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRD 148 (269)
Q Consensus 81 ~~~~~~~~v~~~--------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~ 148 (269)
+++++++.++|+ ++.++++++|++++|+|+||||||||+++|.|.+ ++.+|.|.+||.+++. .++..
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchhccHHHHhhc
Confidence 466666666553 4558999999999999999999999999999988 5779999999998863 22222
Q ss_pred CCCChhhH-------H------------HHHHHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCC
Q 024315 149 LSFKAEDR-------V------------ENIRRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEG 199 (269)
Q Consensus 149 ~g~~~~~~-------~------------~~~~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~ 199 (269)
++|.+|+- + +.+....+.+ .... ..|.... ...+++++++| .++|+++.++
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~ 573 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence 23322211 1 1111111111 1111 1233222 23457888888 7999999999
Q ss_pred CccEEEEeCChhHHHhcChhhHHHHH
Q 024315 200 DFIEVFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 200 ~~~~i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
++ +++|+|++.+|....+.+.+.+
T Consensus 574 ~I--liLDE~tSaLD~~te~~i~~~l 597 (1321)
T 4f4c_A 574 KI--LLLDEATSALDAESEGIVQQAL 597 (1321)
T ss_dssp SE--EEEESTTTTSCTTTHHHHHHHH
T ss_pred CE--EEEecccccCCHHHHHHHHHHH
Confidence 99 8999999999998766555443
No 57
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.36 E-value=4.8e-12 Score=106.51 Aligned_cols=151 Identities=25% Similarity=0.271 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHHhCC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g 174 (269)
+.+.+|+|+|++||||||+++.|++.+. ..++++|.+... ......+........++.+.. .+ ..+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-----~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~---~~-~~~ 86 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-----YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGE---RL-ASR 86 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT-----CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHH---HH-TSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHH---HH-hcC
Confidence 4467899999999999999999999873 447888876421 112223333333333333222 22 445
Q ss_pred cceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCC--CCeE
Q 024315 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLN--CEVG 249 (269)
Q Consensus 175 ~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~--~e~~ 249 (269)
..++++........++.+..+... ++..|++++|.+.+.+|..+ |.++... +..+...+++|.. ++++
T Consensus 87 ~~vivd~~~~~~~~~~~l~~~~~~-~~~vi~l~~~~e~~~~Rl~~------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (202)
T 3t61_A 87 EPVVVSCSALKRSYRDKLRESAPG-GLAFVFLHGSESVLAERMHH------RTGHFMPSSLLQTQLETLEDPRGEVRTVA 159 (202)
T ss_dssp SCCEEECCCCSHHHHHHHHHTSTT-CCEEEEEECCHHHHHHHHHH------HHSSCCCHHHHHHHHHHCCCCTTSTTEEE
T ss_pred CCEEEECCCCCHHHHHHHHHhcCC-CeEEEEEeCCHHHHHHHHHH------hhccCCCHHHHHHHHHhcCCCCCCCCeEE
Confidence 555665555556667777766643 34558999999999988743 3222111 1222233444432 5789
Q ss_pred EEcCCCcCHHHHHH-HHhhc
Q 024315 250 VHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 250 id~~~~~~~~~~~~-i~~~~ 268 (269)
||++ .+++++.. |.++|
T Consensus 160 Id~~--~~~~e~~~~I~~~l 177 (202)
T 3t61_A 160 VDVA--QPLAEIVREALAGL 177 (202)
T ss_dssp EESS--SCHHHHHHHHHHHH
T ss_pred EeCC--CCHHHHHHHHHHHH
Confidence 9985 67888777 76654
No 58
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.32 E-value=1.6e-12 Score=116.77 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=83.6
Q ss_pred eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHH-------H
Q 024315 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-------R 162 (269)
Q Consensus 90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~-------~ 162 (269)
...+++++.+++|++++|+|+||||||||+++|+|.+. +.+|.|.++|. +.. +..+..+-+....+++. .
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~-i~~-v~Q~~~l~~~tv~enl~~~~~~~~~ 128 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGR-ISF-CSQNSWIMPGTIKENIIGVSYDEYR 128 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-EEEEEEECCSC-EEE-ECSSCCCCSSBHHHHHHTTCCCHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCE-EEE-EeCCCccCcccHHHHhhCcccchHH
Confidence 45677899999999999999999999999999999884 56899999873 110 00000000001111110 0
Q ss_pred HHHH------HHHHHhCCc------ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315 163 IGEV------AKLFADAGV------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (269)
Q Consensus 163 l~~~------a~~~~~~g~------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~ 224 (269)
..+. ...+..... ...+...++++++| ..+++++.++++ +++|||+..++....+.+.+.
T Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l--llLDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 129 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE--EEEECCcccCCHHHHHHHHHH
Confidence 0000 011111110 00123567777777 699999999999 999999999999888887764
No 59
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.32 E-value=1.1e-11 Score=108.90 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHH-HH-HHHHHHhCCcce
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI-GE-VAKLFADAGVIC 177 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l-~~-~a~~~~~~g~~~ 177 (269)
.++.+|+|+|++||||||+++.|+..+...|...+.++.|.++..+.. +..... ...+.. .. +...+.. ..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~---~~~~~e-~~~~~~~~~~i~~~l~~--~~v 75 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV---WKEKYE-EFIKKSTYRLIDSALKN--YWV 75 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---CCGGGH-HHHHHHHHHHHHHHHTT--SEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---hhHHHH-HHHHHHHHHHHHHHhhC--CEE
Confidence 356799999999999999999999987544445555788887754432 333211 111111 11 1222222 344
Q ss_pred eeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCcc--ccccccccccCCCC------CCC
Q 024315 178 IACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKV--KGFTGIDDPYEPPL------NCE 247 (269)
Q Consensus 178 iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~--~~~~~i~~~~e~p~------~~e 247 (269)
+++.....+..+..+..++.. .....|++++|.+.|.+|..++ .... ..+..+...|+.|. .+.
T Consensus 76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R------~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 149 (260)
T 3a4m_A 76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER------GEKIPNEVIKKMYEKFDEPGKKYKWDEPF 149 (260)
T ss_dssp EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT------TCSSCHHHHHHHHHHCCCTTSSCGGGCCS
T ss_pred EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC------CCCCCHHHHHHHHHHhcCccccCCCCCCE
Confidence 555444344445544443321 1345589999999999987442 1111 11222234466553 468
Q ss_pred eEEEcCCCcCHHHHHH-HHhhc
Q 024315 248 VGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 248 ~~id~~~~~~~~~~~~-i~~~~ 268 (269)
++||++...++++++. |.+++
T Consensus 150 ~~Id~~~~~~~~ei~~~I~~~l 171 (260)
T 3a4m_A 150 LIIDTTKDIDFNEIAKKLIEKS 171 (260)
T ss_dssp EEEETTSCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHhcc
Confidence 9999975568888877 66553
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.32 E-value=1e-11 Score=102.46 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=66.2
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCC
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g 174 (269)
++|.+++|++++|+|+||||||||++.+.+- ...++.+.++..+..+.+ ...-....+..+..........+
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~-------~~~~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g 73 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKP-------TEVISSDFCRGLMSDDEN-DQTVTGAAFDVLHYIVSKRLQLG 73 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCG-------GGEEEHHHHHHHHCSSTT-CGGGHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccC-------CeEEccHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHhCC
Confidence 5788999999999999999999999964311 112333333211111111 01001111122222222233445
Q ss_pred cceeeccC---ChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315 175 VICIACLI---SPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (269)
Q Consensus 175 ~~~iv~~~---~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~ 218 (269)
...+.... +..+++| ..+++++.++++ +++|+|++.|+.+..
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~--lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIEMAKDYHCFPVA--VVFNLPEKVCQERNK 119 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHTTCEEEE--EEECCCHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHcCCcEEE--EEEeCCHHHHHHHHh
Confidence 54443322 3444555 688888888877 999999999999854
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.31 E-value=1e-12 Score=138.68 Aligned_cols=134 Identities=21% Similarity=0.232 Sum_probs=93.2
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~ 159 (269)
..+++++++++|++++|+|+||||||||+++|.|++ ++.+|.|.++|.++.. .++..+++.+|+. +++
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence 456779999999999999999999999999999988 5779999999988763 2334444444322 111
Q ss_pred H--------------HHHHHHH--HHHH-h--CCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315 160 I--------------RRIGEVA--KLFA-D--AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (269)
Q Consensus 160 ~--------------~~l~~~a--~~~~-~--~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~ 215 (269)
+ ....+.+ ..+. . .|+... ...++++++|| ..+|+++.++++ +++|||+..+|.
T Consensus 1127 i~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i--LiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI--LLLDEATSALDT 1204 (1284)
T ss_dssp HTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS--EEEESCSSSCCH
T ss_pred HhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCH
Confidence 1 1111111 0111 1 122111 23467888887 699999999999 999999999999
Q ss_pred cChhhHHHHHhc
Q 024315 216 RDPKGLYKLARE 227 (269)
Q Consensus 216 R~~k~l~~~~r~ 227 (269)
...+.+++.+++
T Consensus 1205 ~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1205 ESEKVVQEALDK 1216 (1284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777766553
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.28 E-value=1.6e-12 Score=137.21 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=87.8
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN 159 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~ 159 (269)
..+++++++++|++++|+|+||||||||+++|.|.+ ++.+|.|.++|.++.. .++..+++.+|+ .+++
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 483 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence 345668999999999999999999999999999988 5779999999988753 122222322221 1122
Q ss_pred HHH---------HHH---H---HHHHHh--CCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 160 IRR---------IGE---V---AKLFAD--AGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 160 ~~~---------l~~---~---a~~~~~--~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
+.. +.+ . ...... .|... -...+++++++| .++|+++.++++ +++|||+..++...
T Consensus 484 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i--liLDEpts~LD~~~ 561 (1284)
T 3g5u_A 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI--LLLDEATSALDTES 561 (1284)
T ss_dssp HHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE--EEEESTTCSSCHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHHH
Confidence 110 000 0 011111 12211 233567888887 699999999999 99999999999876
Q ss_pred hhhHHHH
Q 024315 218 PKGLYKL 224 (269)
Q Consensus 218 ~k~l~~~ 224 (269)
.+.+.+.
T Consensus 562 ~~~i~~~ 568 (1284)
T 3g5u_A 562 EAVVQAA 568 (1284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555433
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.27 E-value=6.7e-12 Score=121.61 Aligned_cols=129 Identities=14% Similarity=0.077 Sum_probs=84.6
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhHHHHHHH------HHH
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENIRR------IGE 165 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~~~~~~------l~~ 165 (269)
.++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.+++..+.. ........+..+....... ...
T Consensus 287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 365 (538)
T 3ozx_A 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEI-TADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWF 365 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHH
T ss_pred ccceECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHH
Confidence 36778999999999999999999999999988 4668888887765431 1111111111111111000 000
Q ss_pred HHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 166 VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 166 ~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
....+...++.. .+..+|+++++| .++++++.++++ +++|||+..++......+++.++
T Consensus 366 ~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l--LlLDEPT~gLD~~~~~~i~~~l~ 429 (538)
T 3ozx_A 366 FEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL--YVLDQPSSYLDVEERYIVAKAIK 429 (538)
T ss_dssp HHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 112222333322 244567788887 699999999999 99999999999988877665544
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.22 E-value=5.4e-12 Score=122.27 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=90.5
Q ss_pred cceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE---------EECCeecCc------
Q 024315 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRH------ 143 (269)
Q Consensus 80 ~~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i---------~l~g~~~~~------ 143 (269)
.++++.++.. ....+++ .+++|++++|+|+||||||||+++|+|.+. +.+|.+ .++|.++..
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 5788877654 3567788 899999999999999999999999999884 445543 234433210
Q ss_pred ccccCCCCChh-----------hHHHHHHHH---HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 144 GLNRDLSFKAE-----------DRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 144 ~l~~~~g~~~~-----------~~~~~~~~l---~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
.....+++..+ ...+.+... ..+..++...++.. .+..+++++++| .++++++.++++ +
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l--L 180 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF--Y 180 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 00000111000 111111100 11233444445432 234557777777 699999999999 9
Q ss_pred EEeCChhHHHhcChhhHHHHHh
Q 024315 205 FMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++|||+..++....+.+.+.++
T Consensus 181 lLDEPTs~LD~~~~~~l~~~L~ 202 (538)
T 1yqt_A 181 FFDEPSSYLDIRQRLNAARAIR 202 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHH
Confidence 9999999999988777655543
No 65
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.20 E-value=3.6e-11 Score=118.07 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=83.2
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHHHHH-H-HH---H
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI-R-RI---G 164 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~~~~-~-~l---~ 164 (269)
+..++.+++|++++|+||||||||||+++|+|.+. +.+|.|.+.. .+. ........++..+..... . .. .
T Consensus 373 ~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~~-~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 450 (607)
T 3bk7_A 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDL-TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNF 450 (607)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCCCC-CEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHH
T ss_pred EecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEEee-EEEEEecCccCCCCCcHHHHHHhhhccCCCHHH
Confidence 34456689999999999999999999999999884 5577776521 111 111111122222222111 0 00 1
Q ss_pred HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 165 EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 165 ~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.+...+...++.. .+..+|+++++| .++++++.++++ +++|||+..++......+++.++
T Consensus 451 ~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~ 515 (607)
T 3bk7_A 451 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAVSRAIR 515 (607)
T ss_dssp HHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 1122333334322 244567788887 689999999999 99999999999998888776654
No 66
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.17 E-value=4.9e-11 Score=98.81 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH-----HHHHHHHHHHHhCC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-----RRIGEVAKLFADAG 174 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~-----~~l~~~a~~~~~~g 174 (269)
+++.+|+|+|++||||||+++.|+..+.. .+++.|.++..+....+....+....+ ..+..........|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~-----~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 77 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRL-----PLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSG 77 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC-----eEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999998742 367777765433222222222111111 11112222223345
Q ss_pred cceeeccCChHHHHHHHHHHhCC--CCCccEEEEeCChhHHHhcChhhHHHHHh-----cCcccc---ccccccccCCCC
Q 024315 175 VICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGLYKLAR-----EGKVKG---FTGIDDPYEPPL 244 (269)
Q Consensus 175 ~~~iv~~~~~~~~~r~~ar~ll~--~~~~~~i~ld~p~~~l~~R~~k~l~~~~r-----~g~~~~---~~~i~~~~e~p~ 244 (269)
..++++...........+.++.. ......|++++|.+.+.+|..++-....| ...+.. +..+.+.|+++.
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
T 2rhm_A 78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLP 157 (193)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCCC
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCcc
Confidence 54554433322222222222221 12334589999999999997554210001 011111 112334466554
Q ss_pred --CCCeEEEcCCC--cCHHHHHH-HHhh
Q 024315 245 --NCEVGVHVWYR--FELAETWR-ITKW 267 (269)
Q Consensus 245 --~~e~~id~~~~--~~~~~~~~-i~~~ 267 (269)
.+.++|||+.. ...+++.. |.++
T Consensus 158 ~~~~~~~Idt~~~~~~~~~~i~~~i~~~ 185 (193)
T 2rhm_A 158 LGGPLLTVDTTFPEQIDMNAIVQWVRQH 185 (193)
T ss_dssp CCSCEEEEECSSGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcccCHHHHHHHHHHH
Confidence 46799999643 23455554 4444
No 67
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.17 E-value=5.5e-11 Score=115.23 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=82.7
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHHHHH-H-HH---H
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI-R-RI---G 164 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~~~~-~-~l---~ 164 (269)
+..++.+++|++++|+|+||||||||+++|+|.+. +.+|.|.+.. .+. ........++..+..... . .. .
T Consensus 303 ~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~~-~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~ 380 (538)
T 1yqt_A 303 EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEWDL-TVAYKPQYIKADYEGTVYELLSKIDASKLNSNF 380 (538)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCCCC-CEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHH
T ss_pred EeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECc-eEEEEecCCcCCCCCcHHHHHHhhhccCCCHHH
Confidence 34566789999999999999999999999999884 5567765521 111 111111122222221111 0 00 0
Q ss_pred HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 165 EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 165 ~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
.....+...++.. .+..+|+++++| ..+++++.++++ +++|||+..++......+++.++
T Consensus 381 ~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l--LlLDEPt~~LD~~~~~~i~~~l~ 445 (538)
T 1yqt_A 381 YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAVSRAIR 445 (538)
T ss_dssp HHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 1122333334422 234567777777 688999999999 99999999999998888776644
No 68
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.16 E-value=9.2e-12 Score=122.24 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=89.9
Q ss_pred cceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE---------EECCeecCcc-----
Q 024315 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG----- 144 (269)
Q Consensus 80 ~~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i---------~l~g~~~~~~----- 144 (269)
.++++.++.. ....+++ .+++|++++|+|+||||||||+++|+|.+. +.+|.+ .++|.++...
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhh
Confidence 4677777654 2667778 899999999999999999999999999884 445553 2344332110
Q ss_pred -cccCCCCChh-----------hHHHHHHHH---HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315 145 -LNRDLSFKAE-----------DRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (269)
Q Consensus 145 -l~~~~g~~~~-----------~~~~~~~~l---~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i 204 (269)
.....++..+ ...+.+... ..+..++...++.. .+..+|+++++| .++++++.++++ +
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~l--L 250 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHF--Y 250 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 0000110000 011111100 01223344445432 234567777777 699999999999 9
Q ss_pred EEeCChhHHHhcChhhHHHHHh
Q 024315 205 FMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 205 ~ld~p~~~l~~R~~k~l~~~~r 226 (269)
++|||+..++...+..+.+.++
T Consensus 251 lLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHH
Confidence 9999999999988777655443
No 69
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1.3e-11 Score=103.87 Aligned_cols=46 Identities=26% Similarity=0.334 Sum_probs=30.8
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..+++++.+.+|.+++|+|++||||||+++.|++.+.. .+++.+++
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~-----~~i~~d~~ 59 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV-----PFIDLDWY 59 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEEHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC-----CEEcchHH
Confidence 45678899999999999999999999999999998843 25666654
No 70
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.14 E-value=5.2e-11 Score=118.06 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=79.3
Q ss_pred EEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHH---------------------HHHHHhhccCC-------ccEE
Q 024315 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA---------------------CALSQALHWRG-------KLTY 134 (269)
Q Consensus 83 ~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla---------------------~~L~~~l~~~~-------~g~i 134 (269)
.+........++++|.+++|++++|+||||||||||+ +.+.+... ++ .+.+
T Consensus 25 ~~~~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i 103 (670)
T 3ux8_A 25 IVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAI 103 (670)
T ss_dssp EEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEE
T ss_pred EEcCCCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccce
Confidence 3343345568899999999999999999999999997 66666553 33 3455
Q ss_pred EECCeecCcccccCC-----------------C-------------CChhhHHHHH-----------------HHHHHHH
Q 024315 135 ILDGDNCRHGLNRDL-----------------S-------------FKAEDRVENI-----------------RRIGEVA 167 (269)
Q Consensus 135 ~l~g~~~~~~l~~~~-----------------g-------------~~~~~~~~~~-----------------~~l~~~a 167 (269)
.+++.+.....+..+ + ++..+..... ..+.+..
T Consensus 104 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (670)
T 3ux8_A 104 SIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL 183 (670)
T ss_dssp EESSCC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHH
T ss_pred EecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Confidence 666544321100000 0 0000000000 0000111
Q ss_pred HHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCC--ccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 168 KLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 168 ~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~--~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
..+...++. ..+..+|+++++| .++++++.+++ + +++|||+..++....+.+.+.++
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l--LlLDEPtsgLD~~~~~~l~~~l~ 248 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL--YVLDEPSIGLHQRDNDRLIATLK 248 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE--EEEECTTTTCCGGGHHHHHHHHH
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence 123334432 2344567777777 69999999887 7 99999999999999888765544
No 71
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.2e-11 Score=116.87 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=77.9
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE-----------EECCeecCc----ccccCC------CCChh--
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRH----GLNRDL------SFKAE-- 154 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i-----------~l~g~~~~~----~l~~~~------g~~~~-- 154 (269)
.+.+|++++|+||||||||||+++|++++. +.+|.+ .+.|..+.. .+...+ .+...
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP 177 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhh
Confidence 578999999999999999999999999884 556655 222222110 000000 00000
Q ss_pred --------hHHHHHHH-----HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315 155 --------DRVENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (269)
Q Consensus 155 --------~~~~~~~~-----l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R 216 (269)
...+.+.. ...+..++...++.. .+..+++++++| .++++++.++++ +++|||+..++..
T Consensus 178 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~l--lllDEPts~LD~~ 255 (608)
T 3j16_B 178 RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADV--YMFDEPSSYLDVK 255 (608)
T ss_dssp HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSE--EEEECTTTTCCHH
T ss_pred hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCE--EEEECcccCCCHH
Confidence 00000000 011223333344422 244567777777 699999999998 9999999999998
Q ss_pred ChhhHHHHHhc
Q 024315 217 DPKGLYKLARE 227 (269)
Q Consensus 217 ~~k~l~~~~r~ 227 (269)
....+.+.+++
T Consensus 256 ~~~~l~~~l~~ 266 (608)
T 3j16_B 256 QRLNAAQIIRS 266 (608)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHHH
Confidence 87777666553
No 72
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.09 E-value=4.1e-11 Score=116.07 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=78.7
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE-----------EECCeecCc----------ccccCCCCChh---
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRH----------GLNRDLSFKAE--- 154 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i-----------~l~g~~~~~----------~l~~~~g~~~~--- 154 (269)
.++|++++|+||||||||||+++|++.+. |..|.+ .++|.++.. .......+...
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 46899999999999999999999999884 556765 455544311 00000111111
Q ss_pred ----hHHHHHHHH---HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315 155 ----DRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 155 ----~~~~~~~~l---~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~ 222 (269)
...+.+... .....++...++.. .+..+++++++| .++++++.++++ +++|||+..++......+.
T Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i--lllDEPts~LD~~~~~~l~ 178 (538)
T 3ozx_A 101 FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV--YIFDQPSSYLDVRERMNMA 178 (538)
T ss_dssp TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHHH
T ss_pred hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECCcccCCHHHHHHHH
Confidence 001111110 01222333444422 244567777777 699999999999 9999999999998887776
Q ss_pred HHHh
Q 024315 223 KLAR 226 (269)
Q Consensus 223 ~~~r 226 (269)
+.++
T Consensus 179 ~~l~ 182 (538)
T 3ozx_A 179 KAIR 182 (538)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.09 E-value=1.5e-10 Score=118.46 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=46.9
Q ss_pred cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
.++++.+.. ....+++++.+.+|++++|+|+||||||||++.|+|.+ .+.+|.|.+++
T Consensus 675 ~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll-~P~sG~I~~~~ 734 (986)
T 2iw3_A 675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSGEVYTHE 734 (986)
T ss_dssp EEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS-CCSEEEEEECT
T ss_pred EeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEcC
Confidence 345554432 33456789999999999999999999999999999988 46689999975
No 74
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.06 E-value=1.4e-09 Score=90.90 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=37.3
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR 156 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~ 156 (269)
|+.+.+|++++|+||||||||||++.|++.++ .+.+++..... ......+|..+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDE 60 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccH
Confidence 35667899999999999999999999999863 35666655432 1223345555443
No 75
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.00 E-value=7.3e-10 Score=91.01 Aligned_cols=158 Identities=14% Similarity=0.073 Sum_probs=72.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC----CeecCccccc-CCCCCh-hhHHHHHHHHHHHHHHHHhC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD----GDNCRHGLNR-DLSFKA-EDRVENIRRIGEVAKLFADA 173 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~----g~~~~~~l~~-~~g~~~-~~~~~~~~~l~~~a~~~~~~ 173 (269)
.++.+|+|+|++||||||+++.|+..+..+ ++++ |+.++..+.. ...+.. +.+.+.... .+...+...
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~----~i~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~--~i~~~l~~~ 76 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGS----FVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLD--ALQYASREA 76 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTC----EECCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHH--HHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCC----EEEchhhhHHHHHHhCccccchhhhhHHHHHHHHH--HHHHHHHhC
Confidence 357799999999999999999999877532 2224 2222221110 011111 111111111 112223332
Q ss_pred CcceeeccCChHHHHHHHHHHhCC--CCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEE
Q 024315 174 GVICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVH 251 (269)
Q Consensus 174 g~~~iv~~~~~~~~~r~~ar~ll~--~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id 251 (269)
+..++++........+......+. ...+..|++++|.+.+.+|..++-.. .-....+..+...++++ ....+||
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r---~~~~~~~~~~~~~~~~~-~~~~~Id 152 (183)
T 2vli_A 77 AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQP---QVNVGTVEDRLNELRGE-QFQTHID 152 (183)
T ss_dssp SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-------CCHHHHHHHHHHHTSG-GGCSEEE
T ss_pred CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcccc---chhHHHHHHHHHhhccc-ccceEee
Confidence 444444433222222222222221 12234489999999999997654311 00001111222333443 2234999
Q ss_pred cCCCcCHHHHHH-HHhhc
Q 024315 252 VWYRFELAETWR-ITKWL 268 (269)
Q Consensus 252 ~~~~~~~~~~~~-i~~~~ 268 (269)
++ ..+++++.. |.++|
T Consensus 153 ~~-~~~~~~~~~~I~~~l 169 (183)
T 2vli_A 153 TA-GLGTQQVAEQIAAQV 169 (183)
T ss_dssp CT-TCCHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHH
Confidence 84 567888877 66654
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.00 E-value=1.2e-09 Score=111.80 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=87.5
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHH-hhc--c-CC-ccEEEECCeecCcccccCCCCChhh
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ-ALH--W-RG-KLTYILDGDNCRHGLNRDLSFKAED 155 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~-~l~--~-~~-~g~i~l~g~~~~~~l~~~~g~~~~~ 155 (269)
++++.++.....++++|.+.+|++++|+|+||||||||+++|++ .+. + .. ...+++..+ .. .+. ..++..+
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~-~~-~~~--~~ltv~e 515 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHD-ID-GTH--SDTSVLD 515 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCC-CC-CCC--TTSBHHH
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccc-cc-ccc--cCCcHHH
Confidence 56666666667888999999999999999999999999999984 221 0 00 011111111 00 000 0111111
Q ss_pred HHHH--HHHHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 156 RVEN--IRRIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 156 ~~~~--~~~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.... ......+...+...|+. ..+..+|+++++| .++++++.++++ +++|||+..++....+.+.+.++.
T Consensus 516 ~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l--LLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 516 FVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI--LLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp HHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHHHHHHHHHHHh
Confidence 1000 00001223334444542 1244567777777 699999999999 999999999999998888877765
No 77
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.00 E-value=9.2e-10 Score=96.21 Aligned_cols=122 Identities=11% Similarity=0.117 Sum_probs=74.4
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc------ccCCCCChhhHHHH-H-HHHHHHHHH
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSFKAEDRVEN-I-RRIGEVAKL 169 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l------~~~~g~~~~~~~~~-~-~~l~~~a~~ 169 (269)
..++|.+++|+|+|||||||+++.|++.+. .+.+++++|.++..+ ....+....+..+. . ..+..+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTK 104 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence 456789999999999999999999999874 346789999887542 33445554444332 1 222333344
Q ss_pred HHhCCcceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHH
Q 024315 170 FADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLY 222 (269)
Q Consensus 170 ~~~~g~~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~ 222 (269)
+...+...+++.......++......+.. ..+..+++++|.+.|..|..++..
T Consensus 105 ~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~ 159 (253)
T 2p5t_B 105 LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE 159 (253)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence 44555444544332222223222222221 233446889999999999766543
No 78
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.00 E-value=5.6e-10 Score=92.47 Aligned_cols=114 Identities=19% Similarity=0.197 Sum_probs=64.9
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc--cCCCCChhhHHHH---HHHHHHHHHHHHh
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAEDRVEN---IRRIGEVAKLFAD 172 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~--~~~g~~~~~~~~~---~~~l~~~a~~~~~ 172 (269)
.+++|++++|+|+|||||||+++.|++. ++.|.+.++++++..... ...++..+..... ...+...+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999996 346789999988653221 2235555432211 1122222222333
Q ss_pred CCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315 173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217 (269)
Q Consensus 173 ~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~ 217 (269)
.+...++..... .......+.+ ...+..+++.++.+++..|.
T Consensus 82 ~~~~~~~~~~~~-~~~l~~~~~~--~~~~~~ls~~~~~~v~~~R~ 123 (191)
T 1zp6_A 82 EGYFVILDGVVR-PDWLPAFTAL--ARPLHYIVLRTTAAEAIERC 123 (191)
T ss_dssp TSCEEEECSCCC-TTTTHHHHTT--CSCEEEEEEECCHHHHHHHH
T ss_pred cCCeEEEeccCc-HHHHHHHHhc--CCCeEEEEecCCHHHHHHHH
Confidence 343333332111 0111112211 22344589999999888776
No 79
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.96 E-value=1.1e-09 Score=108.46 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=30.9
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~ 123 (269)
....+++++++++|++++|+||||||||||++.|.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 34578889999999999999999999999997654
No 80
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=1.9e-09 Score=105.88 Aligned_cols=132 Identities=16% Similarity=0.101 Sum_probs=78.3
Q ss_pred eccCcceecCCC-----eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHHHH-HH
Q 024315 91 KRDRQQLLQQKG-----CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVEN-IR 161 (269)
Q Consensus 91 ~~~r~sl~~~~g-----~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~~~-~~ 161 (269)
..++.+|.+.+| ++++|+|+||||||||+++|+|++. +.+|.. +....+. .........+..+.... ..
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~-~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~ 439 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQD-IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR 439 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCC-CCSCCEEEECSSCCCCCCSBHHHHHHHHCS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcC-ccCCcEEEecccccccCCccHHHHHHHHhh
Confidence 456778888888 7899999999999999999999885 444531 1110000 00000001111111000 00
Q ss_pred ----HHHHHHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 162 ----RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 162 ----~l~~~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
........+...++. ..+..+|+++++| .++++++.++++ +++|||+..++......+++.++
T Consensus 440 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l--LlLDEPT~gLD~~~~~~i~~ll~ 511 (608)
T 3j16_B 440 GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADI--YLIDEPSAYLDSEQRIICSKVIR 511 (608)
T ss_dssp STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE--EEECCTTTTCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCCCCCHHHHHHHHHHHH
Confidence 000111122222322 2345567888888 688999999999 99999999999888777665443
No 81
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.93 E-value=4.9e-11 Score=104.84 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=40.7
Q ss_pred EEee-CceeeccCcceecCC---CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 83 LWHK-NSVDKRDRQQLLQQK---GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 83 ~~~~-~~v~~~~r~sl~~~~---g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
++.+ ......++.++.+.+ |++++|+|++||||||+++.|++.+.. .+++.+.+.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~-----~~~d~d~~~ 83 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY-----TFFDCDTLI 83 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEHHHHH
T ss_pred eEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC-----cEEeCcHHH
Confidence 4444 344556778999999 999999999999999999999998852 367766553
No 82
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.92 E-value=3e-09 Score=99.78 Aligned_cols=132 Identities=15% Similarity=0.085 Sum_probs=83.3
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCC
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g 174 (269)
..+..+++.+|+|+|++||||||+++.|+..+. .++++.|.+. . +..+...+......+
T Consensus 251 ~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~-------~---------~~~~~~~~~~~l~~g 309 (416)
T 3zvl_A 251 SSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG-----YVHVNRDTLG-------S---------WQRCVSSCQAALRQG 309 (416)
T ss_dssp SCSCCSSCCEEEEESCTTSSHHHHHHHHTGGGT-----CEECCGGGSC-------S---------HHHHHHHHHHHHHTT
T ss_pred cccCCCCCEEEEEECCCCCCHHHHHHHHHHhcC-----cEEEccchHH-------H---------HHHHHHHHHHHHhcC
Confidence 345567789999999999999999999988663 4577777663 1 111222223333456
Q ss_pred cceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCcc--ccccccccccCCCCCCC
Q 024315 175 VICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKV--KGFTGIDDPYEPPLNCE 247 (269)
Q Consensus 175 ~~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~--~~~~~i~~~~e~p~~~e 247 (269)
..++++.......+|..+.+++.. ..+..|++++|.+.|.+|..++.........+ ..+..+...||+|...|
T Consensus 310 ~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E 386 (416)
T 3zvl_A 310 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAE 386 (416)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGG
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCccc
Confidence 667776665555666555554432 34566899999999999986654311111122 11334556788887544
No 83
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.91 E-value=7e-09 Score=85.92 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=65.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHHHHHHHHHHhCCcc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRIGEVAKLFADAGVI 176 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l~~~a~~~~~~g~~ 176 (269)
|++++|+|+|||||||+++.|++.+ .|.++++++++..... .++..+.. ...++.+...+..+...+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~----~g~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 75 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEGDIINHMVV--GGYRPPWESDELLALTWKNITDLTVNFLLAQND 75 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS----SSEEEEEHHHHHTTCC--TTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc----CCeEEEcccchhhhhc--cccccCccchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 6899999999999999999998733 4678999988754321 22222211 11222222333333344444
Q ss_pred eeeccCChHHHHHHHHHHhC----CCCCccEEEEeCChhHHHhcChhhH
Q 024315 177 CIACLISPYRKDRDACRSML----PEGDFIEVFMDVPLQVCEARDPKGL 221 (269)
Q Consensus 177 ~iv~~~~~~~~~r~~ar~ll----~~~~~~~i~ld~p~~~l~~R~~k~l 221 (269)
.+++.... ....+.++.++ ....+..+++++|.+.+..|...+.
T Consensus 76 ~ild~~~~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 76 VVLDYIAF-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp EEEESCCC-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred EEEeeccC-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 44443322 22223333332 1223444789999999999986553
No 84
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.89 E-value=2.4e-10 Score=97.90 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=30.9
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
-+..++++|.+++|++++|+||||||||||++.|++.+ + |.+.+ +.++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~ 57 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSC 57 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCE
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecc
Confidence 45567889999999999999999999999999999987 3 56777 5443
No 85
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.86 E-value=3.9e-09 Score=91.77 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=41.9
Q ss_pred cEEEEeCChhHHHhcChhhHHHHHhcCc-------ccccccccc-ccCCCCCCC---eEEEcCCCcCHHHHHH-HHhhc
Q 024315 202 IEVFMDVPLQVCEARDPKGLYKLAREGK-------VKGFTGIDD-PYEPPLNCE---VGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 202 ~~i~ld~p~~~l~~R~~k~l~~~~r~g~-------~~~~~~i~~-~~e~p~~~e---~~id~~~~~~~~~~~~-i~~~~ 268 (269)
+.||+++|.+++.+|..+++++.-.... +......+. .|..|..+. ++|||+ .++++++.. |.+++
T Consensus 148 lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs-~l~iee~v~~I~~~i 225 (233)
T 3r20_A 148 VKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS-DMDQAQVIAHLLDLV 225 (233)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT-TSCHHHHHHHHHHHC
T ss_pred EEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC-CCCHHHHHHHHHHHH
Confidence 6689999999999998776643211111 111112222 355555433 999995 899999998 65553
No 86
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.84 E-value=1.5e-08 Score=81.87 Aligned_cols=138 Identities=15% Similarity=0.058 Sum_probs=72.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeecc--
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL-- 181 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~-- 181 (269)
+|+|+|++||||||+++.|++.+.. .+++.+.+..... .....+ .....+. .+..++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~-----~~i~~d~~~~~~~--------~~~~~~----~~~~~l~-~~~~vi~dr~~ 64 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY-----PIIKGSSFELAKS--------GNEKLF----EHFNKLA-DEDNVIIDRFV 64 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC-----CEEECCCHHHHTT--------CHHHHH----HHHHHHT-TCCSEEEESCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eeecCcccccchh--------HHHHHH----HHHHHHH-hCCCeEEeeee
Confidence 6899999999999999999998753 2677765432110 001111 1111111 122222211
Q ss_pred -------------CChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCC---
Q 024315 182 -------------ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEP--- 242 (269)
Q Consensus 182 -------------~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~--- 242 (269)
.......+..++..+..+.+ .|++++|.+.+.+|..++ ...... +..+.+.|+.
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~i~l~~~~e~~~~R~~~r------~r~~~~~~~~~~~~~~~~~~~~ 137 (173)
T 3kb2_A 65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAK-VVYLHADPSVIKKRLRVR------GDEYIEGKDIDSILELYREVMS 137 (173)
T ss_dssp HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEE-EEEEECCHHHHHHHHHHH------SCSCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCE-EEEEeCCHHHHHHHHHhc------CCcchhhhHHHHHHHHHHHHHh
Confidence 01112334444444334433 489999999999987442 111111 1111122221
Q ss_pred -CCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 243 -PLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 243 -p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
...+.++||++ ..+++++.. |.+.
T Consensus 138 ~~~~~~~~id~~-~~~~~ev~~~I~~~ 163 (173)
T 3kb2_A 138 NAGLHTYSWDTG-QWSSDEIAKDIIFL 163 (173)
T ss_dssp TCSSCEEEEETT-TSCHHHHHHHHHHH
T ss_pred hcCCCEEEEECC-CCCHHHHHHHHHHH
Confidence 12367899984 467888777 5544
No 87
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.83 E-value=1.7e-10 Score=94.11 Aligned_cols=37 Identities=32% Similarity=0.431 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+.+++|+|+|||||||+++.|++.+. ..+++++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~d~~~ 39 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDSDQEI 39 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-----CEEEEHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEeccHHH
Confidence 467899999999999999999999874 2577777653
No 88
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.82 E-value=7.9e-09 Score=84.24 Aligned_cols=114 Identities=21% Similarity=0.138 Sum_probs=65.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC-C----CCChhhHHHHHHHHHHHHHHHH---hCC
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-L----SFKAEDRVENIRRIGEVAKLFA---DAG 174 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~-~----g~~~~~~~~~~~~l~~~a~~~~---~~g 174 (269)
.+|+|+|++||||||+++.|+... .+...++.|.++..+... . .+..+........+........ ..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~----~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhc----CCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 579999999999999999999821 235678777665433221 1 1332221111122222333333 456
Q ss_pred cceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhh
Q 024315 175 VICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 175 ~~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
..++++.......+++.++.++.. .++..+++++|.+.|.+|..++
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 126 (181)
T 1ly1_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (181)
T ss_dssp CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc
Confidence 556665443333444444443322 2334589999999999987553
No 89
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.80 E-value=6.2e-09 Score=96.69 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=34.6
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++...+.+++.+.+| +++|+|+||||||||+++|...+.
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 456667889999999 999999999999999999987764
No 90
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.78 E-value=2.4e-09 Score=93.64 Aligned_cols=27 Identities=44% Similarity=0.556 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
++|++++|+|+|||||||+++.|++.|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999999554
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.76 E-value=7e-09 Score=91.48 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=38.6
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+++|++++|+||||||||||+++|.+.+.+..+|.|.++++++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 65 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence 79999999999999999999999999885333789999888764
No 92
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.76 E-value=4.2e-10 Score=96.15 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHHHHH-HHHHHHHHHHHh-C
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI-RRIGEVAKLFAD-A 173 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~~~~-~~l~~~a~~~~~-~ 173 (269)
+.+|++++|+||||||||||+++|++. . +.+|.|.. .++. ...+..++|.+|+..+++ .........+.. .
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~ 94 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMV 94 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999998 4 44555522 1111 123455677777643333 110000000000 0
Q ss_pred C---cceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 174 G---VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 174 g---~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
. +..+... ..++++| ..+++++.++++ +++|||+.. ..+.+.+.++.
T Consensus 95 ~~~~~~~~l~~-glGq~qrv~lAraL~~~p~l--llLDEPts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 95 EPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAF--VILDEAQNT----TPAQMKMFLTR 145 (208)
T ss_dssp CTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEE--EEECSGGGC----CHHHHHHHHTT
T ss_pred cHHHHHHHHHh-CCchHHHHHHHHHHhcCCCE--EEEeCCccc----cHHHHHHHHHH
Confidence 0 0000111 1123333 578888888888 999999999 44455555443
No 93
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.75 E-value=2.5e-09 Score=87.48 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=43.9
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
....+.+++.+++|++++|+||||||||||++.|++.+ +.+|.|.++|.++.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence 33456678999999999999999999999999999988 45688888886653
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.75 E-value=9.2e-09 Score=104.13 Aligned_cols=45 Identities=33% Similarity=0.406 Sum_probs=36.8
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHH-HHHhh
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA-LSQAL 126 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~-L~~~l 126 (269)
+++....+...+++++.+++|++++|+|+||||||||++. |.+.+
T Consensus 503 L~v~~l~~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 503 LELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEEEEEETTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred EEEEeeeecccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 4555444445778899999999999999999999999996 77655
No 95
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.73 E-value=9.1e-08 Score=79.75 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=26.1
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.+.+|++++|+|+|||||||+++.|++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999999987
No 96
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.71 E-value=7.6e-09 Score=85.21 Aligned_cols=152 Identities=13% Similarity=0.143 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHH-HHHHHHHhCC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIG-EVAKLFADAG 174 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~-~~a~~~~~~g 174 (269)
.+..|+|+|++||||||+++.|+..+.. .+++.|.+..... +....+.. ..++.+. ++...+....
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~-----~~i~~d~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 75 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKR-----ILYDSDKEIEKRT---GADIAWIFEMEGEAGFRRREREMIEALCKLD 75 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCC-----CEEEHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEChHHHHHHc---CCChhhHHHHhCHHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999998853 3677766543211 22222111 1111111 1111122212
Q ss_pred cceeeccC--ChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcC--hhhHHH-HHhcCc-ccccccccc----ccCCCC
Q 024315 175 VICIACLI--SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD--PKGLYK-LAREGK-VKGFTGIDD----PYEPPL 244 (269)
Q Consensus 175 ~~~iv~~~--~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~--~k~l~~-~~r~g~-~~~~~~i~~----~~e~p~ 244 (269)
..++.... ......++.++.. . ..||+++|.+.+.+|. .++-.. ...... ...+..+.. .|+.
T Consensus 76 ~~vi~~gg~~~~~~~~~~~l~~~----~-~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~-- 148 (185)
T 3trf_A 76 NIILATGGGVVLDEKNRQQISET----G-VVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQA-- 148 (185)
T ss_dssp SCEEECCTTGGGSHHHHHHHHHH----E-EEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CcEEecCCceecCHHHHHHHHhC----C-cEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh--
Confidence 22222111 1122334444432 1 3489999999999887 321100 000000 000111111 1221
Q ss_pred CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 245 NCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 245 ~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
.++++|||+ ..+++++.. |.+++
T Consensus 149 ~ad~~Idt~-~~~~~e~~~~I~~~l 172 (185)
T 3trf_A 149 MADLVYPTD-DLNPRQLATQILVDI 172 (185)
T ss_dssp HCSEEEECT-TCCHHHHHHHHHHHS
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHH
Confidence 168999995 677888877 77665
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.71 E-value=4e-08 Score=84.21 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=33.7
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHH--HhhccCCccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALS--QALHWRGKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~--~~l~~~~~g~i~l~g~~ 140 (269)
-+++|++++|+||||||||||++.|+ +.+ .++.+.+++++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEccC
Confidence 46899999999999999999999999 543 3455666776654
No 98
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.71 E-value=2.4e-08 Score=89.89 Aligned_cols=49 Identities=27% Similarity=0.300 Sum_probs=41.5
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+..++.+++|++++|+|+|||||||+++.|++.+.+ .+|.|.+.+.+..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTF 139 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCS
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeeccc
Confidence 346778899999999999999999999999999864 4688888887653
No 99
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.65 E-value=2.6e-08 Score=85.37 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=22.6
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHH-Hhhc
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALH 127 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~-~~l~ 127 (269)
.+..|+.+++|++++|+||||||||||++.|+ +.++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45678899999999999999999999999999 8763
No 100
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.64 E-value=2e-07 Score=77.30 Aligned_cols=26 Identities=42% Similarity=0.410 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
|++++|+||||||||||++.|.+.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999885
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.62 E-value=1.7e-08 Score=83.95 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=63.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHHHHHHHHHHHHHH-HHh-CCcce
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIGEVAKL-FAD-AGVIC 177 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~~~~~~l~~~a~~-~~~-~g~~~ 177 (269)
.++|+||||||||||++.|++.+. +.++|.+... .....+++..++.. ....+ .+.. +.. .-...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~-~~~~~--~~~~~~~~~~~~~~ 72 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTE-GKKKI--FSSKFFTSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETT-CCEEE--EEETTCCCSSEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCc-HHHHH--HHhhcCCccccccc
Confidence 578999999999999999999884 2233322110 11222344333210 00000 0000 000 00011
Q ss_pred eeccCChHHHHH-HHHHH-----hCCCCCccEEEEeC--ChhHHHhcChhhHHHHHhc
Q 024315 178 IACLISPYRKDR-DACRS-----MLPEGDFIEVFMDV--PLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 178 iv~~~~~~~~~r-~~ar~-----ll~~~~~~~i~ld~--p~~~l~~R~~k~l~~~~r~ 227 (269)
.+...++++++| ..+++ ++.++++ +++|| |++.++....+.+.+.+++
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~l--lilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKV--IIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCE--EEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCE--EEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 122345566666 56775 7888888 99999 9999988777777766665
No 102
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.62 E-value=2.5e-08 Score=80.29 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=55.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC-CeecCcccccCCCCChhhHHHHHHH---------HHHHH-HHH-H
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAEDRVENIRR---------IGEVA-KLF-A 171 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~-g~~~~~~l~~~~g~~~~~~~~~~~~---------l~~~a-~~~-~ 171 (269)
+|+|+|++||||||+++.| ..+. . ..++ ++.++...... +....+....... +.... ..+ .
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g---~--~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG---A--KVIVMSDVVRKRYSIE-AKPGERLMDFAKRLREIYGDGVVARLCVEELGT 75 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT---C--EEEEHHHHHHHHHHHH-C---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC---C--cEEEHhHHHHHHHHhc-CCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 7899999999999999999 5543 1 2333 33333211100 1111111111111 01111 111 1
Q ss_pred hCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315 172 DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 172 ~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
..+...+++.. ....++..++..... ++..|++++|.+.+.+|..++
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~~~-~~~~i~l~~~~~~~~~R~~~R 122 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLLGD-SVYIVAVHSPPKIRYKRMIER 122 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHHCS-CEEEEEEECCHHHHHHHHHTC
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhc
Confidence 23333444433 334555666666653 345589999999999987544
No 103
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.62 E-value=1.6e-07 Score=80.57 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=41.5
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCcccccCCCCChhhH
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~~l~~~~g~~~~~~ 156 (269)
..++|++++|+||||||||||++.|.+.+++ ...|.+.+.+.+.+.......+|..+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~ 71 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 71 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence 4589999999999999999999999998753 2356677777655544344456655543
No 104
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.62 E-value=9.5e-08 Score=97.54 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=34.3
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~ 123 (269)
+++........+++++.+++|++++|+|+||||||||++.|.
T Consensus 630 L~v~~l~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 630 LEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEECSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEecCcccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 444443344578889999999999999999999999999853
No 105
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.62 E-value=8.4e-09 Score=93.97 Aligned_cols=90 Identities=11% Similarity=0.004 Sum_probs=62.5
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHH
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFA 171 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~ 171 (269)
.+..++.+++|++++|+|+||||||||+++|.+.++ +.+|.+.+++.+.. .+... .
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~-------~~~~~--~-------------- 216 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEI-------VFKHH--K-------------- 216 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCC-------CCSSC--S--------------
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeecc-------ccccc--h--------------
Confidence 455688899999999999999999999999999884 56899999875421 11100 0
Q ss_pred hCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315 172 DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (269)
Q Consensus 172 ~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~ 211 (269)
....++. . ++++++ ..++++..++++ +++|||..
T Consensus 217 --~~i~~~~-g-gg~~~r~~la~aL~~~p~i--lildE~~~ 251 (330)
T 2pt7_A 217 --NYTQLFF-G-GNITSADCLKSCLRMRPDR--IILGELRS 251 (330)
T ss_dssp --SEEEEEC-B-TTBCHHHHHHHHTTSCCSE--EEECCCCS
T ss_pred --hEEEEEe-C-CChhHHHHHHHHhhhCCCE--EEEcCCCh
Confidence 0000110 0 233344 577777778888 89999987
No 106
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.59 E-value=3.9e-08 Score=83.44 Aligned_cols=27 Identities=48% Similarity=0.586 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+.+++|+|+|||||||+++.|++.+.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999999873
No 107
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.59 E-value=1.7e-07 Score=79.33 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=78.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH---HH----H--------------
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV---EN----I-------------- 160 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~---~~----~-------------- 160 (269)
..+|+|.|++||||||+++.|+..|.-+ ++|++-++. .....|++.+... +. +
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~-----~~D~~~~~~-~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 79 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIP-----LYSKELLDE-VAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLE 79 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCC-----EECHHHHHH-TTCC---------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcC-----EECHHHHHH-HHHhcCCCHHHHHHHhhhchhHHHHHhcccccccccc
Confidence 3489999999999999999999998644 677543321 1111222221110 00 0
Q ss_pred ----HHHHHHHHHHH--hCCcceeeccCChHHHHHHHHHHhCCC-CCccEEEEeCChhHHHhcChhhH-------HH---
Q 024315 161 ----RRIGEVAKLFA--DAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGL-------YK--- 223 (269)
Q Consensus 161 ----~~l~~~a~~~~--~~g~~~iv~~~~~~~~~r~~ar~ll~~-~~~~~i~ld~p~~~l~~R~~k~l-------~~--- 223 (269)
....++...+. ..+-.++...... -++.+ +..+.||+++|++.+.+|..++. .+
T Consensus 80 ~~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~---------~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~ 150 (201)
T 3fdi_A 80 QDIAIRQFNFIRKKANEEKESFVIVGRCAE---------EILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMK 150 (201)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCEEEESTTHH---------HHTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEECCcc---------hhcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 11122222233 3333333322211 12332 24567999999999999875431 00
Q ss_pred ---HHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 224 ---LAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 224 ---~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
..|......+++.+ +..|...+++|||+ .+++++|.. |.+++
T Consensus 151 ~~d~~R~~~y~~~~~~~--~~~~~~~dl~Idt~-~l~~eevv~~I~~~i 196 (201)
T 3fdi_A 151 KMDKMRKVYHNFYCESK--WGDSRTYDICIKIG-KVDVDTATDMIIKYI 196 (201)
T ss_dssp HHHHHHHHHHHHHCSSC--TTBGGGCSEEEEES-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CCCcccCCEEEECC-CCCHHHHHHHHHHHH
Confidence 11111112223333 23355678999995 888999998 66553
No 108
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.58 E-value=2.3e-07 Score=77.70 Aligned_cols=31 Identities=39% Similarity=0.403 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~ 130 (269)
++|.+|+|+|++||||||+++.|+..+...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 5688999999999999999999999876443
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.56 E-value=3e-08 Score=81.14 Aligned_cols=147 Identities=19% Similarity=0.195 Sum_probs=74.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHH-HHHHHHHHhCCcce
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGVIC 177 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l-~~~a~~~~~~g~~~ 177 (269)
.++|+|++||||||+++.|++.+. ..+++.+.+.... .+....+. ....+.. ..+...+.... ..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~~~~~---~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~-~~ 76 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFLIEQK---FNQKVSEIFEQKRENFFREQEQKMADFFSSCE-KA 76 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHHHHHH---HTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCC-SE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHHHHHH---cCCCHHHHHHHcCHHHHHHHHHHHHHHHHccC-CE
Confidence 589999999999999999999884 3477777654211 12222111 1111111 11111122111 22
Q ss_pred eeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccC---C--CCCCCeEEEc
Q 024315 178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE---P--PLNCEVGVHV 252 (269)
Q Consensus 178 iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e---~--p~~~e~~id~ 252 (269)
++..+.+...++. +.+.. ..||+++|.+.+.+|..++.+. .+ ........+...|+ + +..++++|||
T Consensus 77 vi~~g~~~~~~~~-----l~~~~-~~i~l~~~~e~~~~R~~~r~~~-~r-~~~~~~~~i~~~~~~r~~~y~~~~~~~Idt 148 (175)
T 1via_A 77 CIATGGGFVNVSN-----LEKAG-FCIYLKADFEYLKKRLDKDEIS-KR-PLFYDEIKAKKLYNERLSKYEQKANFILNI 148 (175)
T ss_dssp EEECCTTGGGSTT-----GGGGC-EEEEEECCHHHHTTCCCGGGTT-TS-CTTCCHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred EEECCCCEehhhH-----HhcCC-EEEEEeCCHHHHHHHHhcccCC-CC-CCcccHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 2222221111111 22222 3489999999999998655310 01 11110111221111 1 1235799999
Q ss_pred CCCcCHHHHHH-HHhhc
Q 024315 253 WYRFELAETWR-ITKWL 268 (269)
Q Consensus 253 ~~~~~~~~~~~-i~~~~ 268 (269)
+ ..+++++.. |.++|
T Consensus 149 ~-~~~~eev~~~I~~~l 164 (175)
T 1via_A 149 E-NKNIDELLSEIKKVI 164 (175)
T ss_dssp T-TCCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHH
Confidence 4 578888888 76654
No 110
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.56 E-value=1.4e-07 Score=79.78 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=34.6
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C-----CccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-R-----GKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~-----~~g~i~l~g~~ 140 (269)
-+++|++++|+||||||||||++.|++.+.. + +.+.+++++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4689999999999999999999999996543 1 34577777654
No 111
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.55 E-value=1.1e-07 Score=84.30 Aligned_cols=113 Identities=21% Similarity=0.158 Sum_probs=66.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc---CC--CCChhhHHHHH-HHHHHHHHHHH---hC
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---DL--SFKAEDRVENI-RRIGEVAKLFA---DA 173 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~---~~--g~~~~~~~~~~-~~l~~~a~~~~---~~ 173 (269)
.+|+|+|++||||||+++.|+..+ .+..+++.|.++..+.. +. .+... ..... ..+.+...... ..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 77 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYTKK-KEGIVTGMQFDTAKSILYGGDS 77 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CCHH-HHHHHHHHHHHHHHHHTTSCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccchh-hhhHHHHHHHHHHHHHHhhccC
Confidence 579999999999999999999854 14567887766543322 11 22221 11111 11222222233 45
Q ss_pred CcceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhh
Q 024315 174 GVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG 220 (269)
Q Consensus 174 g~~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~ 220 (269)
+..++++.......+++.+.+++.. .++..|++++|.+.+.+|..++
T Consensus 78 g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R 126 (301)
T 1ltq_A 78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (301)
T ss_dssp CCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc
Confidence 5566666554444455555444322 2345589999999999987543
No 112
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.55 E-value=2.2e-07 Score=82.76 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=65.5
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc------CCCC-ChhhHHHHHHHH-HHHHHHH
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR------DLSF-KAEDRVENIRRI-GEVAKLF 170 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~------~~g~-~~~~~~~~~~~l-~~~a~~~ 170 (269)
...|.+++|+|+|||||||+++.|+..+. .+.+.+++|.++..... ..+. ..+........+ .......
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 106 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRL 106 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence 35688999999999999999999998763 24678898877642211 0000 001111112221 1122222
Q ss_pred HhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhH
Q 024315 171 ADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGL 221 (269)
Q Consensus 171 ~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l 221 (269)
...|..++++.......++...++.+... .+..+++++|.+.+..+..+++
T Consensus 107 l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl 159 (287)
T 1gvn_B 107 SDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERY 159 (287)
T ss_dssp HHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHH
Confidence 33455555554433333343444443332 2334789999999944333343
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.54 E-value=2.2e-07 Score=95.07 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=34.0
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~ 123 (269)
++.........+++++.+++|++++|+|+||||||||++.|.
T Consensus 648 L~v~~l~~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 648 LTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEEECSTTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EEEecCccccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 444443334567889999999999999999999999999853
No 114
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.54 E-value=1.3e-09 Score=102.21 Aligned_cols=128 Identities=13% Similarity=0.006 Sum_probs=73.3
Q ss_pred eccCcceecCCCe--------------------EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------
Q 024315 91 KRDRQQLLQQKGC--------------------VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------- 143 (269)
Q Consensus 91 ~~~r~sl~~~~g~--------------------~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------- 143 (269)
..+.+++.+++|+ +++|+|+||||||||+++|.+.+. +.+|.+.+++.+...
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC----CCCEEEEC
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecceeEEeccc
Confidence 4566788888999 999999999999999999999874 556777777654310
Q ss_pred cc------ccCCCCChhhHHHHHHHHHHHHHH--HHhCCcceeeccCChHHHHHHHHHHhCC----------CCCccEEE
Q 024315 144 GL------NRDLSFKAEDRVENIRRIGEVAKL--FADAGVICIACLISPYRKDRDACRSMLP----------EGDFIEVF 205 (269)
Q Consensus 144 ~l------~~~~g~~~~~~~~~~~~l~~~a~~--~~~~g~~~iv~~~~~~~~~r~~ar~ll~----------~~~~~~i~ 205 (269)
.. ...+++.... . .+.+.... +.+.........+.+.+++...++++.. ++++ ++
T Consensus 117 ~~~~~ltv~D~~g~~~~~--~---~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl--ll 189 (413)
T 1tq4_A 117 PNIPNVVFWDLPGIGSTN--F---PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS--DI 189 (413)
T ss_dssp SSCTTEEEEECCCGGGSS--C---CHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH--HH
T ss_pred cccCCeeehHhhcccchH--H---HHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc--cc
Confidence 00 0111221110 0 01111111 1111111121111124555567888776 4455 57
Q ss_pred EeCChhHHHhcChhhHHHHHh
Q 024315 206 MDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 206 ld~p~~~l~~R~~k~l~~~~r 226 (269)
+|||+..++...++.+.+.++
T Consensus 190 LDEPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp HHHHTTCCTTCCHHHHHHHHH
T ss_pred cCcccccCCHHHHHHHHHHHH
Confidence 799998888887776655544
No 115
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.53 E-value=2.7e-07 Score=76.94 Aligned_cols=30 Identities=37% Similarity=0.554 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRG 130 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~ 130 (269)
+|.+|+|+|++||||||+++.|+..+...+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 578999999999999999999999886443
No 116
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.53 E-value=1.7e-07 Score=80.81 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=81.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH------------------------
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR------------------------ 156 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~------------------------ 156 (269)
+.-+|+|.|++||||||+++.|+..+.- -++|++.+.. .....+++.+..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~-----~~~d~~~~~~-~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~ 86 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGI-----HFYDDDILKL-ASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLH 86 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTC-----EEECHHHHHH-HHHCC-------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCC-----cEEcHHHHHH-HHHHcCCCHHHHHHHHhhccccHHHHHhcccccccc
Confidence 3568999999999999999999998853 2677654331 111111111100
Q ss_pred ------------HHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCC-CCccEEEEeCChhHHHhcChhh--H
Q 024315 157 ------------VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKG--L 221 (269)
Q Consensus 157 ------------~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~-~~~~~i~ld~p~~~l~~R~~k~--l 221 (269)
...+....++...+...+-.++.....+. .++ .+.+ +..+.||+++|++.+.+|..++ +
T Consensus 87 ~~~~~~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~-----vl~-~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~ 160 (223)
T 3hdt_A 87 SKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGY-----VLD-QDEDIERLIRIFVYTDKVKKVQRVMEVDCI 160 (223)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHSCEEEESTTHHH-----HHH-HCTTCCEEEEEEEECCHHHHHHHHHHHHTC
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcch-----hcc-cccCCCCeEEEEEECCHHHHHHHHHHhcCC
Confidence 00011111122222222333333233221 111 1122 2356799999999999987542 0
Q ss_pred -----H------HHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 222 -----Y------KLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 222 -----~------~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
. ...|......+++++ +..|...+++|||+ ..++++|+. |.++
T Consensus 161 ~~~~a~~~I~~~d~~R~~~Y~~ytg~~--~~~~~~~dl~IdT~-~l~~eevv~~I~~~ 215 (223)
T 3hdt_A 161 DEERAKRRIKKIEKERKEYYKYFTGSE--WHSMKNYDLPINTT-KLTLEETAELIKAY 215 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSC--TTCGGGCSEEEECT-TCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCcccCeEEEECC-CCCHHHHHHHHHHH
Confidence 0 011121222234443 56777889999995 888999998 6554
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.48 E-value=7.4e-08 Score=83.45 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=26.7
Q ss_pred CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+.....++++|.+++|++++|+|+||||||||++.|++.+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567788999999999999999999999999999999873
No 118
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.47 E-value=8.6e-07 Score=90.53 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=36.1
Q ss_pred eccCChHHHHH-HHHHHhCCCC---CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 179 ACLISPYRKDR-DACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 179 v~~~~~~~~~r-~~ar~ll~~~---~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
...+|++++|| .++++++.++ ++ +++|||+..++....+.+.+.++
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~L--LILDEPTsGLD~~~~~~L~~lL~ 852 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTL--YILDEPTVGLHFEDVRKLVEVLH 852 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCE--EEEECCCCCCCHHHHHHHHHHHH
Confidence 44567888888 6889988765 46 89999999999988888765544
No 119
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.47 E-value=4.3e-08 Score=80.65 Aligned_cols=148 Identities=22% Similarity=0.191 Sum_probs=73.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHH-HH-HHHHHHhCCc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GE-VAKLFADAGV 175 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l-~~-~a~~~~~~g~ 175 (269)
.+|+|+|++||||||+++.|+..+..+ +++.|.+..... +....+. ...++.. .. +..+......
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRT---GRSIADIFATDGEQEFRRIEEDVVRAALADHDG 74 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHc---CCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCe
Confidence 368999999999999999999987533 677777643221 2221110 0111111 01 1122222222
Q ss_pred ceeeccC-C-hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCcc-ccccccc----cccCCCCCCC
Q 024315 176 ICIACLI-S-PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGKV-KGFTGID----DPYEPPLNCE 247 (269)
Q Consensus 176 ~~iv~~~-~-~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~~-~~~~~i~----~~~e~p~~~e 247 (269)
++.... . .....++.++ . . ..|++++|.+.+.+|..++-.. ....... ..+..+. ..|. ..++
T Consensus 75 -vi~~g~~~v~~~~~~~~l~----~-~-~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~--~~~~ 145 (184)
T 2iyv_A 75 -VLSLGGGAVTSPGVRAALA----G-H-TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYR--RVAT 145 (184)
T ss_dssp -EEECCTTGGGSHHHHHHHT----T-S-CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHH--HHCS
T ss_pred -EEecCCcEEcCHHHHHHHc----C-C-eEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHh--ccCC
Confidence 111111 1 1122333222 2 2 3489999999999997543100 0000000 0011111 1221 2357
Q ss_pred eEEEcCCCcCHHHHHH-HHhhc
Q 024315 248 VGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 248 ~~id~~~~~~~~~~~~-i~~~~ 268 (269)
++|||+ ..+++++.. |.++|
T Consensus 146 ~~Idt~-~~s~ee~~~~I~~~l 166 (184)
T 2iyv_A 146 MRVDTN-RRNPGAVVRHILSRL 166 (184)
T ss_dssp EEEECS-SSCHHHHHHHHHTTS
T ss_pred EEEECC-CCCHHHHHHHHHHHH
Confidence 999994 567888887 77765
No 120
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.47 E-value=7.7e-08 Score=79.23 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=25.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l 136 (269)
+|+|+|++||||||+++.|+..+...+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 689999999999999999999884333333433
No 121
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.47 E-value=7.4e-08 Score=81.26 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.0
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+.+++|++++|+||||||||||+++|+++++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999999999999874
No 122
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.46 E-value=3.2e-07 Score=75.36 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++.+|+|+|++||||||+++.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998774
No 123
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.46 E-value=6.6e-09 Score=85.41 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++.+|+|+|++||||||+++.|+..+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999998874
No 124
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.45 E-value=2.7e-08 Score=80.73 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=73.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHHH-HHHHHHHhCCcc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRIG-EVAKLFADAGVI 176 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l~-~~a~~~~~~g~~ 176 (269)
.+|+|+|++||||||+++.|+..+. ..+++.|.+.... .+....+. ...++.+. .+...+. +..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~d~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~ 72 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG-----YEFVDTDIFMQHT---SGMTVADVVAAEGWPGFRRRESEALQAVA--TPN 72 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT-----CEEEEHHHHHHHH---HCSCHHHHHHHHHHHHHHHHHHHHHHHHC--CSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CcEEcccHHHHHH---hCCCHHHHHHHcCHHHHHHHHHHHHHHhh--cCC
Confidence 3689999999999999999999874 2366666554221 12222111 11111111 1111122 222
Q ss_pred eeeccCC---hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcCh--hhH-----HH-HHhcCccccccccccc-cCCCC
Q 024315 177 CIACLIS---PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP--KGL-----YK-LAREGKVKGFTGIDDP-YEPPL 244 (269)
Q Consensus 177 ~iv~~~~---~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~--k~l-----~~-~~r~g~~~~~~~i~~~-~e~p~ 244 (269)
.++..+. .....+..++. .. ..|++++|.+.+.+|.. ++. .. .....++........+ |..
T Consensus 73 ~vi~~g~~~~~~~~~~~~l~~----~~-~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (173)
T 1e6c_A 73 RVVATGGGMVLLEQNRQFMRA----HG-TVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD-- 145 (173)
T ss_dssp EEEECCTTGGGSHHHHHHHHH----HS-EEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eEEECCCcEEeCHHHHHHHHc----CC-eEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh--
Confidence 2332221 12233443332 12 34899999999998874 220 00 0000000000001111 221
Q ss_pred CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315 245 NCEVGVHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 245 ~~e~~id~~~~~~~~~~~~-i~~~~ 268 (269)
++++||++ ..+++++.. |.++|
T Consensus 146 -~~~~Id~~-~~~~~~~~~~i~~~l 168 (173)
T 1e6c_A 146 -VAHYVVDA-TQPPAAIVCELMQTM 168 (173)
T ss_dssp -HCSEEEET-TSCHHHHHHHHHHHT
T ss_pred -CcEEEECC-CCCHHHHHHHHHHHh
Confidence 57999994 567888887 76665
No 125
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.45 E-value=7.9e-07 Score=76.60 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=27.4
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
.++|.+++|.|++||||||+++.|.+.+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 348999999999999999999999999864
No 126
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.44 E-value=5.2e-07 Score=81.45 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=28.4
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+..++.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 4567777888 99999999999999999998554
No 127
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.44 E-value=3.1e-08 Score=89.33 Aligned_cols=52 Identities=19% Similarity=0.035 Sum_probs=41.1
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~ 137 (269)
++++.+. ....+.+++.+++|++++|+||||||||||+++|++++ +|.|...
T Consensus 106 ~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~ 157 (305)
T 2v9p_A 106 NIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSF 157 (305)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECG
T ss_pred EEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEE
Confidence 4444432 23456789999999999999999999999999999988 5666543
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.43 E-value=9.5e-08 Score=80.65 Aligned_cols=44 Identities=32% Similarity=0.348 Sum_probs=36.6
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCR 142 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~ 142 (269)
.++|++++|+|+||||||||++.|++.+.+. ..+.+.+++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 5789999999999999999999999999642 3677777776553
No 129
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.43 E-value=8.3e-07 Score=74.93 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++|++++|+||||||||||++.|.+.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999999874
No 130
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.43 E-value=7e-08 Score=92.12 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=45.5
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+.+.+.+++.+++ ++++|+||||||||||+++|++++. +.+|.|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEcc
Confidence 4456788999999 9999999999999999999999884 66889999987764
No 131
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.41 E-value=8.1e-08 Score=92.47 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=47.6
Q ss_pred eeCceeeccCcce-ecCCCeEEEEEcCCCChHHHHHHH--HHHhhccCCccEEEECCeec
Q 024315 85 HKNSVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACA--LSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 85 ~~~~v~~~~r~sl-~~~~g~~i~l~G~sGsGKSTla~~--L~~~l~~~~~g~i~l~g~~~ 141 (269)
-...+...+++++ .+++|++++|+|+||||||||++. +.+.+. +++|.+++++.+.
T Consensus 21 ~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEET 79 (525)
T ss_dssp ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC
T ss_pred ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 3445777888999 999999999999999999999999 678774 5678999998763
No 132
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.41 E-value=9.9e-08 Score=86.24 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=28.2
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
+++|++++|+|+||||||||++.|.+.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 789999999999999999999999999854
No 133
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.40 E-value=2.9e-07 Score=84.65 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=36.0
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
...+|.+++|+||||||||||+++|.+.+.+...+.+....+++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e 163 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE 163 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH
Confidence 567888999999999999999999999986543566665555543
No 134
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.39 E-value=5.4e-07 Score=75.42 Aligned_cols=32 Identities=34% Similarity=0.518 Sum_probs=27.5
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~ 130 (269)
.++|.+|+|+|++||||||+++.|+..+...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46788999999999999999999999876444
No 135
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.39 E-value=6.3e-07 Score=73.93 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=25.8
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..++.+|+|+|++||||||+++.|+..+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999998774
No 136
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.39 E-value=1.8e-07 Score=86.15 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=41.2
Q ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
..++.+++|++++|+|+|||||||+++.|++.+.+ .+|.|.+.+.++.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~ 196 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTF 196 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCS
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEeccccc
Confidence 46778899999999999999999999999999864 4678888887653
No 137
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.38 E-value=1.2e-06 Score=79.01 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=34.1
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
++...+|++++|+|+|||||||++..|++.+...+..+.+++.|
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 44567899999999999999999999999986544334444433
No 138
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.38 E-value=1.2e-06 Score=84.27 Aligned_cols=115 Identities=12% Similarity=0.012 Sum_probs=68.1
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCc
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV 175 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~ 175 (269)
+..+.+|++++|+|+||||||||++.+++.+...|...+++...+... .......++......+...+.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~-----------~l~~~~~~~g~~~~~~~~~g~ 343 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA-----------QLLRNAYSWGMDFEEMERQNL 343 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH-----------HHHHHHHTTSCCHHHHHHTTS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-----------HHHHHHHHcCCCHHHHHhCCC
Confidence 447899999999999999999999999998865443345554432211 000000000000001112333
Q ss_pred ceee----ccCChHHHHHH-HHHHhCCCCCccEEEEeCChhHHHhc-----ChhhHHHH
Q 024315 176 ICIA----CLISPYRKDRD-ACRSMLPEGDFIEVFMDVPLQVCEAR-----DPKGLYKL 224 (269)
Q Consensus 176 ~~iv----~~~~~~~~~r~-~ar~ll~~~~~~~i~ld~p~~~l~~R-----~~k~l~~~ 224 (269)
..+. ...++.++++. .++.+..++++ +++| |+..++.. ..+.+++.
T Consensus 344 ~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l--lilD-p~~~Ld~~~~~~~~~~~i~~l 399 (525)
T 1tf7_A 344 LKIVCAYPESAGLEDHLQIIKSEINDFKPAR--IAID-SLSALARGVSNNAFRQFVIGV 399 (525)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEE-CHHHHTSSSCHHHHHHHHHHH
T ss_pred EEEEEeccccCCHHHHHHHHHHHHHhhCCCE--EEEc-ChHHHHhhCChHHHHHHHHHH
Confidence 3332 22455666654 56666677888 8999 99999987 55554443
No 139
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.37 E-value=8.7e-07 Score=73.88 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++.+|+|+|++||||||+++.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999998763
No 140
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.37 E-value=1.4e-07 Score=76.55 Aligned_cols=36 Identities=39% Similarity=0.438 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
-++++|+|++||||||+++.|+..+.-+ +++.|.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~ 42 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMII 42 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHH
Confidence 3589999999999999999999987533 56666543
No 141
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.35 E-value=1.2e-06 Score=73.38 Aligned_cols=40 Identities=33% Similarity=0.421 Sum_probs=32.0
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+++|.+++|+|+|||||||+++.|++.+. +..+++.|+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 567899999999999999999999999762 2445555554
No 142
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.35 E-value=9.6e-07 Score=73.67 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+.+|+|+|++||||||+++.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999999874
No 143
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.35 E-value=1.7e-06 Score=70.91 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=29.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
+|+|+|++||||||+++.|+..+...+....+++.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 689999999999999999999886554446666643
No 144
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.34 E-value=6.9e-07 Score=86.09 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=70.1
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCC---C-CChh--hHHHHHHH-----HHHHH
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL---S-FKAE--DRVENIRR-----IGEVA 167 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~---g-~~~~--~~~~~~~~-----l~~~a 167 (269)
...+.+|+++|++||||||+++.|++.+...+.....|+.|+++..+.... . |.+. +....... +....
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999998865555566788777764332211 1 1111 11111111 11111
Q ss_pred HHH-HhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCC-hhHHHhcC
Q 024315 168 KLF-ADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVP-LQVCEARD 217 (269)
Q Consensus 168 ~~~-~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p-~~~l~~R~ 217 (269)
..+ ...|..++++........|+.+++++.+. .++.|.+.+| .+.+.+|.
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri 165 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNI 165 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHH
Confidence 222 24677778777777777777666665532 3445677777 44444444
No 145
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.33 E-value=1.2e-06 Score=76.44 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=27.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+++|+|+|||||||+++.|++.+.. .+++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~-----~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGW-----PVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC-----CEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCC-----eEEeccHH
Confidence 37899999999999999999998742 25666553
No 146
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.2e-07 Score=90.13 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=39.9
Q ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCcc-E-EEECCe
Q 024315 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-T-YILDGD 139 (269)
Q Consensus 94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g-~-i~l~g~ 139 (269)
+.++.+++|++++|+|+||||||||+++|++++. +.+| . ++++++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~ 176 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLD 176 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCC
Confidence 5788999999999999999999999999999884 4577 7 899885
No 147
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.32 E-value=1.5e-06 Score=80.00 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=35.0
Q ss_pred cCChHHHHH-HHHHHhC------CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315 181 LISPYRKDR-DACRSML------PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (269)
Q Consensus 181 ~~~~~~~~r-~~ar~ll------~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~ 227 (269)
.+++++++| ..+++++ .++++ +++|||+..++....+.+.+.++.
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~--lllDEpt~~LD~~~~~~~~~~l~~ 330 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDA--FFIDEGFSSLDTENKEKIASVLKE 330 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCE--EEEESCCTTSCHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 467777777 5667776 67888 999999999999988887766553
No 148
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.31 E-value=2.2e-07 Score=87.69 Aligned_cols=57 Identities=21% Similarity=0.138 Sum_probs=47.3
Q ss_pred ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
++++.+. .+.+.+.. +.+.+|++++|+|+||||||||++.|++.+ .+..|.+.+.|.
T Consensus 136 ~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~~~~G~i~~~G~ 193 (438)
T 2dpy_A 136 PIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-RADVIVVGLIGE 193 (438)
T ss_dssp CCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESC
T ss_pred ccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEece
Confidence 4444443 45566777 999999999999999999999999999987 466899999987
No 149
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.30 E-value=1.9e-07 Score=85.98 Aligned_cols=46 Identities=28% Similarity=0.237 Sum_probs=41.2
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
+..++.+++|++++|+|+||||||||+++|.+.++ +.+|.|.+++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCc
Confidence 56788999999999999999999999999999884 56899999864
No 150
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.30 E-value=5.9e-07 Score=85.85 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=40.0
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
...++.+++|++++|+|+||||||||++.|++++.. .+|.|.+.+.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~ 331 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDT 331 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcc
Confidence 456788999999999999999999999999999864 467777764443
No 151
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.28 E-value=2.2e-06 Score=68.98 Aligned_cols=145 Identities=21% Similarity=0.222 Sum_probs=71.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHH-HHHHHHHHhCCcce
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGVIC 177 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l-~~~a~~~~~~g~~~ 177 (269)
.|+|+|++||||||+++.|+..+..+ +++.|.+..... +....+. ...++.+ ......+...+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~V 73 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKRE---GLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVV 73 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---TSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHc---CCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeE
Confidence 58999999999999999999987432 566655532111 1111110 0111111 11111222223333
Q ss_pred eeccCC---hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccC-----CCCCCCeE
Q 024315 178 IACLIS---PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE-----PPLNCEVG 249 (269)
Q Consensus 178 iv~~~~---~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e-----~p~~~e~~ 249 (269)
+. .+. .....++.++ ..+ ..|++++|.+.+.+|..++- .|.........+...|+ .+. ++++
T Consensus 74 i~-~g~~~~~~~~~~~~l~----~~~-~~i~l~~~~e~~~~R~~~r~---~r~~~~~~~~~i~~~~~~~~~~~~~-~~~~ 143 (168)
T 2pt5_A 74 IS-TGGGLGANEEALNFMK----SRG-TTVFIDIPFEVFLERCKDSK---ERPLLKRPLDEIKNLFEERRKIYSK-ADIK 143 (168)
T ss_dssp EE-CCHHHHTCHHHHHHHH----TTS-EEEEEECCHHHHHHHCBCTT---CCBGGGSCGGGTHHHHHHHHHHHTT-SSEE
T ss_pred EE-CCCCEeCCHHHHHHHH----cCC-EEEEEECCHHHHHHHHhCCC---CCCCCcchHHHHHHHHHHHHHHHHh-CCEE
Confidence 32 211 1122333332 223 34899999999999986531 01000000111221111 122 6888
Q ss_pred EEcCCCcCHHHHHH-HHhhc
Q 024315 250 VHVWYRFELAETWR-ITKWL 268 (269)
Q Consensus 250 id~~~~~~~~~~~~-i~~~~ 268 (269)
| ++ ..+++++.. |.+++
T Consensus 144 i-~~-~~~~~~~~~~i~~~l 161 (168)
T 2pt5_A 144 V-KG-EKPPEEVVKEILLSL 161 (168)
T ss_dssp E-EC-SSCHHHHHHHHHHHH
T ss_pred E-CC-CCCHHHHHHHHHHHH
Confidence 8 64 577888877 66553
No 152
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.28 E-value=3.7e-07 Score=83.71 Aligned_cols=58 Identities=28% Similarity=0.130 Sum_probs=47.4
Q ss_pred ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
+++..+. .+.+.+.. +.+.+|++++|+|+||||||||++.|++.+. +..|.+.+.|.+
T Consensus 50 ~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~ 108 (347)
T 2obl_A 50 VIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLALIGER 108 (347)
T ss_dssp CCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCC
T ss_pred ccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEeccc
Confidence 4444443 56677888 9999999999999999999999999999884 567888887754
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.27 E-value=6e-07 Score=75.62 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=36.5
Q ss_pred eeeccCcce-ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 89 VDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 89 v~~~~r~sl-~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
+...++... -+++|++++|+|+||||||||++.|++.+...+...++++.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 334445444 56899999999999999999999999877544444445443
No 154
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.26 E-value=5.2e-07 Score=81.23 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+|++++|+|||||||||+++.|++.+. +.+|.+.+.+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCC
Confidence 799999999999999999999999985 45788888887764
No 155
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.25 E-value=3.8e-07 Score=84.25 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=37.3
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+++|++++|+|||||||||++++|.+.+.+..+|.|.+.++++.
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e 176 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 176 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh
Confidence 478999999999999999999999999986433678876666553
No 156
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.23 E-value=9.6e-07 Score=71.09 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+|+.++|+|+||||||||++++.+.+...|...+++++.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 899999999999999999999999886433337788776553
No 157
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.23 E-value=3.7e-06 Score=69.36 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC-ccc--------------ccCCCCChhhHHHHHHHHH
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-HGL--------------NRDLSFKAEDRVENIRRIG 164 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~-~~l--------------~~~~g~~~~~~~~~~~~l~ 164 (269)
..+.+|+|+|++||||||+++.|+..+. ..+++.+++. ... ..+.....+.... .+.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~---~~~ 81 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLE---LLK 81 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHH---HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHH---HHH
Confidence 4577999999999999999999999874 2355544331 111 0000011111111 111
Q ss_pred HHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315 165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (269)
Q Consensus 165 ~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k 219 (269)
+........+..++++.......++..+...+..+++ .|++++|.+.+.+|..+
T Consensus 82 ~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~-~i~l~~~~~~~~~R~~~ 135 (199)
T 2bwj_A 82 EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQL-VICMDCSADTMTNRLLQ 135 (199)
T ss_dssp HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHH
T ss_pred HHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHc
Confidence 1111111234444554222222334444444444444 48999999999888643
No 158
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.23 E-value=9.6e-07 Score=80.30 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=37.4
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
..++|++++|+|||||||||+++.|++.+.+ .+|.+.+.+.++.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~ 168 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTF 168 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeeccc
Confidence 3478999999999999999999999998854 4678888877764
No 159
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.22 E-value=6.3e-07 Score=75.19 Aligned_cols=29 Identities=48% Similarity=0.516 Sum_probs=25.8
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++|++++|+|+||||||||++.|++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999875
No 160
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.22 E-value=1.5e-06 Score=72.91 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=33.5
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
-+++|++++|+|+||||||||++.|++ ..+.+.++++.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 468999999999999999999999998 3456777877653
No 161
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.22 E-value=1.7e-06 Score=72.00 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=28.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+++|+|++||||||+++.|++.+.- .+++.+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~-----~~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV-----PYLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC-----CEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC-----ceeccchHH
Confidence 8999999999999999999998752 266666554
No 162
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.21 E-value=2.2e-06 Score=70.93 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+|+|+|++||||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999874
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.20 E-value=8.3e-07 Score=73.15 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+|++++|+||||||||||++.|.+.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999999774
No 164
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.19 E-value=9.6e-07 Score=79.29 Aligned_cols=42 Identities=31% Similarity=0.211 Sum_probs=35.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEE---CCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYIL---DGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l---~g~~~ 141 (269)
.+|++++|+|+||||||||++.|++.+.. +.+|.+.+ |+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC
Confidence 88999999999999999999999998852 45677777 66543
No 165
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.17 E-value=2.1e-07 Score=84.92 Aligned_cols=52 Identities=25% Similarity=0.128 Sum_probs=43.4
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
....++.++.+++|++++|+|+||||||||++.|.+.+.+ ..|.+.+.+.+.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~ 93 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDP 93 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECG
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcC
Confidence 3455777899999999999999999999999999998854 457777777665
No 166
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.17 E-value=1.1e-06 Score=72.12 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
.+|.+++|+|++||||||+++.|+..+. ...++.++
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~-----~~~i~~d~ 37 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG-----FKKLSTGD 37 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT-----CEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CeEecHHH
Confidence 4688999999999999999999998773 23566443
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.16 E-value=2.6e-06 Score=72.45 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=34.8
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHh--hcc----CCccEEEECCee
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQA--LHW----RGKLTYILDGDN 140 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~--l~~----~~~g~i~l~g~~ 140 (269)
+++|+++.|+|+||||||||++.|++. +++ .+.+.+++++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 579999999999999999999999994 322 256788888764
No 168
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.14 E-value=7.2e-07 Score=73.67 Aligned_cols=40 Identities=28% Similarity=0.250 Sum_probs=30.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECCeecC
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCR 142 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g~~~~ 142 (269)
++++|+|+||||||||++.|.+.+.+.+ .|.|.+++.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 5799999999999999999999996544 789999988754
No 169
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.14 E-value=3.2e-06 Score=69.69 Aligned_cols=31 Identities=45% Similarity=0.505 Sum_probs=24.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEE
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTY 134 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i 134 (269)
+|+|+|++||||||+++.|...+...+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999998854443333
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.14 E-value=9.4e-07 Score=74.16 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++|++++|+||||||||||++.|.+.++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999999999874
No 171
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.12 E-value=1.2e-06 Score=77.53 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.++|+|+||||||||++.|.+.+. +.+|.+.++|.++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCccc
Confidence 589999999999999999999884 5678888888655
No 172
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.11 E-value=3.8e-06 Score=71.15 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+.+|+|+|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999874
No 173
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.09 E-value=7.4e-06 Score=70.19 Aligned_cols=159 Identities=17% Similarity=0.125 Sum_probs=78.7
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC-eecCcccccCC-------------CCChhhHHHHHHH
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDL-------------SFKAEDRVENIRR 162 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g-~~~~~~l~~~~-------------g~~~~~~~~~~~~ 162 (269)
-..+++.+|+|+||+||||+|.++.|+..+. ...++. +-+|..+..+- .+.+.+.. ...
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g-----~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~--~~l 96 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH-----FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV--LAL 96 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC-----CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHH--HHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC-----CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHH--HHH
Confidence 3457889999999999999999999999884 224443 33443222110 01111110 011
Q ss_pred HHHHHHHHHhCCcceeeccCCh-HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcC--------ccccc
Q 024315 163 IGEVAKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG--------KVKGF 233 (269)
Q Consensus 163 l~~~a~~~~~~g~~~iv~~~~~-~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g--------~~~~~ 233 (269)
+.+............+.+ +.| ...+.+.+...+..+.++ +++++|.+++.+|...+.....|.. ++..|
T Consensus 97 v~~~l~~~~~~~~g~ilD-GfPRt~~Qa~~l~~~~~~~~~v-i~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y 174 (217)
T 3umf_A 97 LKEAMIKLVDKNCHFLID-GYPRELDQGIKFEKEVCPCLCV-INFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTF 174 (217)
T ss_dssp HHHHHHHHTTTCSEEEEE-TBCSSHHHHHHHHHHTCCCSEE-EEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCcccc-cCCCcHHHHHHHHHhCCccCEE-EeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHH
Confidence 111111111122222332 233 233344444555555443 8999999999998765532111111 11111
Q ss_pred c----ccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315 234 T----GIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW 267 (269)
Q Consensus 234 ~----~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~ 267 (269)
. .+-++|+.-. .-..||. ..++++++. |.+.
T Consensus 175 ~~~t~pl~~~Y~~~~-~l~~Idg--~~~~eeV~~~I~~~ 210 (217)
T 3umf_A 175 NELTKPVIEHYKQQN-KVITIDA--SGTVDAIFDKVNHE 210 (217)
T ss_dssp HHHTHHHHHHHHTTT-CEEEEET--TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CEEEEEC--CCCHHHHHHHHHHH
Confidence 1 2224454321 2246676 467888887 6554
No 174
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.09 E-value=8.4e-06 Score=71.66 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=26.7
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+++|+++.|+|+||||||||++.+++.+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999999999998764
No 175
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.09 E-value=7.9e-06 Score=66.79 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+.+|+|+|++||||||+++.|+..+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998774
No 176
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.08 E-value=7.3e-07 Score=74.79 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
|++++|+|+||||||||++.|++.+. .+| +.++|...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEec
Confidence 67899999999999999999999986 356 77777554
No 177
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.08 E-value=2e-05 Score=70.35 Aligned_cols=45 Identities=27% Similarity=0.329 Sum_probs=34.5
Q ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..++. +|++++++|+||+||||++..|++.+...+ +.+.+.+.+.
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~~~d~ 136 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADT 136 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEECCS
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCc
Confidence 34555 899999999999999999999999986544 4445444444
No 178
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.08 E-value=1.3e-06 Score=77.32 Aligned_cols=51 Identities=25% Similarity=0.165 Sum_probs=40.8
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECCe
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGD 139 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g~ 139 (269)
+...++.++.+++|++++|+|+||||||||++.|++.+... |...+++++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 44567788889999999999999999999999999988543 3235566553
No 179
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.08 E-value=2.7e-06 Score=71.32 Aligned_cols=44 Identities=39% Similarity=0.405 Sum_probs=33.5
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..++|.+++|+|+|||||||+++.|.+.+...+...+.++.|..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 45789999999999999999999999988544333444444443
No 180
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.06 E-value=2.3e-06 Score=80.32 Aligned_cols=43 Identities=30% Similarity=0.318 Sum_probs=37.0
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.++|.+++|+||||||||||+++|.+.+. +.+|.|.+.++++.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTVEDPIE 206 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEEESSCC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEecccch
Confidence 47899999999999999999999999985 44778888887763
No 181
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.05 E-value=5.3e-06 Score=73.28 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=37.5
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.++.++..++| ++|+||||||||||+++|++.+. .+.+.+++.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---LNFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---CEEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---CCEEEEEcHHHH
Confidence 34556777888 89999999999999999999874 357888887664
No 182
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.02 E-value=9.7e-06 Score=68.00 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
+...+|+|+|.+||||||+++.|+..+. ..+++.|.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg-----~~vid~D~~ 46 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG-----AHVVNVDRI 46 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC-----CEEEECcHH
Confidence 3456899999999999999999998753 346776665
No 183
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.01 E-value=1.5e-05 Score=65.00 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
+|.+|+|+|++||||||+++.|+..+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999998853
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.98 E-value=8e-06 Score=70.65 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++..|+|+|++||||||+++.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999998773
No 185
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.96 E-value=3.4e-07 Score=79.14 Aligned_cols=44 Identities=23% Similarity=0.183 Sum_probs=31.2
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
++.+.+ ++++|+||||||||||+++|++.+. +.+|.|.++|.++
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTE 65 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-CCTTTC-------
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-cCCCeEEECCEEc
Confidence 455555 7889999999999999999999985 5578888888766
No 186
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.96 E-value=1.5e-06 Score=88.85 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=31.0
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.+.++++.+++|++++|+|||||||||+++.+....
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 345668889999999999999999999999987643
No 187
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.95 E-value=5.8e-06 Score=69.57 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.|+|+|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 188
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.95 E-value=7.8e-06 Score=74.75 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=36.6
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CC----ccE-EEECCeec
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RG----KLT-YILDGDNC 141 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~----~g~-i~l~g~~~ 141 (269)
...+++|+++.|+|+||||||||++.|++.+.. +. .|. +++++.+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 567899999999999999999999999998721 11 244 88887643
No 189
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.95 E-value=2.6e-06 Score=81.95 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=39.5
Q ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
..++.+++|+.++|+|+|||||||++++|.+.+ ++..|.+.+++..
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~ 297 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSC
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcc
Confidence 345777899999999999999999999999988 4668888887754
No 190
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.94 E-value=1.3e-05 Score=67.75 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++|..|+|+|++||||||+++.|+..+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999999874
No 191
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.94 E-value=3.1e-06 Score=85.06 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=26.9
Q ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+.++. |++++|+|||||||||+++.|++...
T Consensus 571 disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 571 DLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp EEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 34454 99999999999999999999999763
No 192
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.94 E-value=8.3e-06 Score=66.63 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=30.3
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+..++.+.+| +.+|+|+|||||||++++|...+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 5677888888 899999999999999999998775
No 193
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.93 E-value=4.6e-06 Score=76.42 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=31.8
Q ss_pred cCcceecCC--CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 93 DRQQLLQQK--GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 93 ~r~sl~~~~--g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+.+++.+.+ |+.++|+|+||||||||++.|++.+.
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788889 99999999999999999999999885
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=3.5e-06 Score=68.97 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=28.9
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++.+.+|+.++|+||||+|||||+++|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667899999999999999999999999885
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.92 E-value=3.3e-06 Score=72.29 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=33.2
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+...++|++++|.|+|||||||+++.|.+. .|.+.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence 3445689999999999999999999999886 34566666543
No 196
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.92 E-value=2.8e-06 Score=76.02 Aligned_cols=45 Identities=29% Similarity=0.278 Sum_probs=30.2
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE---CCeecC
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR 142 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l---~g~~~~ 142 (269)
+....|++++|+|+||||||||+++|.+.+. +..|.+.+ +|.++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCce
Confidence 4566899999999999999999999999874 56888888 776654
No 197
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.91 E-value=2.9e-05 Score=65.30 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+.+++|+|++||||||+++.|++.+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998763
No 198
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.91 E-value=9.2e-06 Score=83.21 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=28.6
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~ 123 (269)
+.+.++.+.+|++++|+|||||||||+++.++
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34568888999999999999999999999993
No 199
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.91 E-value=2e-06 Score=80.85 Aligned_cols=40 Identities=28% Similarity=0.245 Sum_probs=33.3
Q ss_pred eCceeeccCcceecCCCeE--EEEEcCCCChHHHHHHHHHHhh
Q 024315 86 KNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 86 ~~~v~~~~r~sl~~~~g~~--i~l~G~sGsGKSTla~~L~~~l 126 (269)
++... .+++++.+++|++ ++|+|+||||||||+++|.+..
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 33444 7788999999999 9999999999999999999974
No 200
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.91 E-value=1.1e-05 Score=67.76 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.|+|+|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988774
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.90 E-value=6.3e-06 Score=69.63 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=26.9
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.|.++...+|++++|+||||||||||++.|.+.++
T Consensus 10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ------CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34566667999999999999999999999999764
No 202
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.87 E-value=2.9e-05 Score=66.00 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+|+|+|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998773
No 203
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.87 E-value=6.4e-05 Score=63.97 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l 136 (269)
.+|.+|+|.|++||||||+++.|...+...+..++..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4689999999999999999999999987655444444
No 204
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.84 E-value=1.5e-05 Score=67.68 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++.+|+|+|++||||||+++.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999998774
No 205
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.84 E-value=1.6e-05 Score=71.84 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=38.2
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
...++..++|++++++|+||+||||++..|++.+...+..+.+++.|.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 346677889999999999999999999999999875554455555543
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.80 E-value=7.4e-06 Score=73.39 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=32.0
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE---CCeecC
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR 142 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l---~g~~~~ 142 (269)
+....|++++|+|+||||||||+++|. .+ .+..|.|.+ +|.+..
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCce
Confidence 445679999999999999999999999 66 456788888 776553
No 207
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.79 E-value=3.5e-05 Score=66.38 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR 129 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~ 129 (269)
..+|.+|+|.|++||||||+++.|...+...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3579999999999999999999999988543
No 208
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.78 E-value=4.9e-06 Score=81.59 Aligned_cols=37 Identities=30% Similarity=0.083 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
++|+|+||||||||+++|.|.+.+.++|.+.++|.++
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 8999999999999999999987544789999999875
No 209
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.78 E-value=0.00011 Score=66.97 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.++.+++|+||+|||||||+..|++.+. ..+++.|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC-----CcEEccccc
Confidence 4567999999999999999999999874 235555543
No 210
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.78 E-value=8.1e-06 Score=75.04 Aligned_cols=38 Identities=26% Similarity=0.092 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~ 137 (269)
.+|++++|+|+||+|||||++.|.+.+..+..|.|.+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 47999999999999999999999998741556777665
No 211
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.78 E-value=1.3e-05 Score=68.98 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
++++++|+|+|||||||+++.|+..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999554
No 212
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.76 E-value=7.9e-05 Score=62.88 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++..|+|+|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999874
No 213
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.76 E-value=3.9e-06 Score=75.62 Aligned_cols=44 Identities=25% Similarity=0.225 Sum_probs=26.3
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE---CCeec
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNC 141 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l---~g~~~ 141 (269)
+.+.+|++++|+|+||+|||||++.|.+.+. +..|.+.+ +|...
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHT 214 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCccc
Confidence 5677899999999999999999999999774 45677776 55443
No 214
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.76 E-value=2.1e-05 Score=67.83 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=36.1
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+.++.+++| ++|+||||||||||+++|++.+. .+.+.+++.++.
T Consensus 42 ~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~ 86 (254)
T 1ixz_A 42 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 86 (254)
T ss_dssp HHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred HHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHH
Confidence 4456677778 88999999999999999999874 567888776553
No 215
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.75 E-value=2.3e-05 Score=73.07 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.0
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHH--Hhhcc----CCccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALS--QALHW----RGKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~--~~l~~----~~~g~i~l~g~~ 140 (269)
-+++|+++.|+|+||||||||++.|+ ..++. .+.+++++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 36899999999999999999999665 33321 235688888765
No 216
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.73 E-value=4.3e-05 Score=72.39 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC-C---CCCh--hh----HHHHH-HHHHHHHH
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-L---SFKA--ED----RVENI-RRIGEVAK 168 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~-~---g~~~--~~----~~~~~-~~l~~~a~ 168 (269)
..+.+|+++|.+||||||+++.|++.+......+..++.+.++..+... . -+.. ++ +..+. ..+.....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999886554455566555444322111 0 0111 11 11111 11111122
Q ss_pred HHH-hCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEe--CC-hhHHHhc
Q 024315 169 LFA-DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMD--VP-LQVCEAR 216 (269)
Q Consensus 169 ~~~-~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld--~p-~~~l~~R 216 (269)
.+. ..|...+++........|+.+.+.+.+..+..++++ ++ .+.+..|
T Consensus 117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r 168 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN 168 (469)
T ss_dssp HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHH
Confidence 232 446567777766666666666555543222224554 35 4454444
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.71 E-value=1.6e-05 Score=66.54 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=26.3
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+|.+++|+|+|||||||+++.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999999998773
No 218
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.71 E-value=2.9e-05 Score=68.09 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=36.2
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+.++.+++| ++|+||||||||||+++|++.+. .+.+.+++.++.
T Consensus 66 ~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~ 110 (278)
T 1iy2_A 66 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 110 (278)
T ss_dssp HHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred HHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHH
Confidence 4456777778 88999999999999999999874 567888776553
No 219
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.69 E-value=5.3e-05 Score=64.70 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+..|+|+|++||||||+++.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999999874
No 220
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.66 E-value=2.7e-05 Score=64.07 Aligned_cols=43 Identities=30% Similarity=0.362 Sum_probs=32.1
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.++...++..++|+|++||||||+++.|+..+. |..+++.|++
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d~~ 45 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKL 45 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHHHH
Confidence 356667889999999999999999999999731 2446666554
No 221
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.64 E-value=1.3e-05 Score=72.29 Aligned_cols=41 Identities=24% Similarity=0.196 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc-------cCCccEEEECCeecC
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH-------WRGKLTYILDGDNCR 142 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~-------~~~~g~i~l~g~~~~ 142 (269)
=++++|+|+||||||||++.|++..+ .+..|.+.+||..+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 36899999999999999999999752 234677888887664
No 222
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.63 E-value=4.5e-05 Score=69.05 Aligned_cols=27 Identities=33% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+-+++|+|+|||||||+++.|.+.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345999999999999999999999885
No 223
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.63 E-value=3.5e-05 Score=65.38 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=34.4
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
-+++|+++.|+|+|||||||++..++..+...+.++++++.+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4589999999999999999998877765545566778887653
No 224
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.62 E-value=3.1e-05 Score=65.59 Aligned_cols=48 Identities=6% Similarity=0.025 Sum_probs=43.3
Q ss_pred CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315 13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN 73 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~ 73 (269)
|..|.+||+|.|+|.+.+|++ +|.+++.+|+|+++|+ +. |+|+||+..
T Consensus 149 ~~~l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~--~~-----------Tva~G~V~~ 198 (204)
T 3e1y_E 149 PRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE--GK-----------TIAIGKVLK 198 (204)
T ss_dssp CSCCCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECS--SS-----------CCEEEEEEE
T ss_pred CcCcCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEEC--Cc-----------EEEEEEEEE
Confidence 456999999999999999999 9999999999999999 43 999999864
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.62 E-value=4.3e-05 Score=68.32 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=34.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~ 141 (269)
.+|++++|+|+||+||||++..|++.+.. .|..+.+++.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47899999999999999999999999863 4555667776654
No 226
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.60 E-value=2.1e-05 Score=65.53 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=26.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+++|+|+|||||||+++.|++ +. ..++++|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-----~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-----VPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-----CCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-----CcccchHHH
Confidence 3789999999999999999988 42 346777665
No 227
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.60 E-value=0.00027 Score=61.15 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCcc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g 132 (269)
.+|.+|+|.|++||||||+++.|...+...+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999999999998755533
No 228
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.59 E-value=0.00019 Score=60.17 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.|+|+|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999774
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.56 E-value=0.00055 Score=64.21 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=35.9
Q ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..++. +|++++++|++||||||++..|++.+...+..+.+++.|..
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 34555 89999999999999999999999999755555556665533
No 230
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.55 E-value=1.7e-05 Score=65.81 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=27.6
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.+.+|..++|+|+||||||||++.|.+..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 888999999999999999999999998865
No 231
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.53 E-value=3e-05 Score=71.78 Aligned_cols=35 Identities=29% Similarity=0.142 Sum_probs=31.6
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++.++.+++|++++|+||||||||||++.|++.+
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44557899999999999999999999999999976
No 232
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.52 E-value=0.00014 Score=62.73 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.-.++|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999885
No 233
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.52 E-value=5.6e-05 Score=67.40 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=27.1
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
..++.+++|+|++|||||||++.|.+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 357899999999999999999999999864
No 234
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.49 E-value=7.4e-05 Score=64.61 Aligned_cols=44 Identities=27% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccC-----CccEEEECCeecCc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH 143 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-----~~g~i~l~g~~~~~ 143 (269)
.+..+|+|+|++||||||+++.|+..+..+ +...+.++.|++..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 455689999999999999999999977532 33466788777654
No 235
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.46 E-value=7.2e-05 Score=61.82 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.+|.+|+|+|++||||||+++.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999987
No 236
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.46 E-value=4e-05 Score=63.28 Aligned_cols=35 Identities=43% Similarity=0.357 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
+..+|+|+|++||||||+++.|++. |..+++.|++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence 4578999999999999999999985 2346776654
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.46 E-value=0.00058 Score=64.19 Aligned_cols=42 Identities=31% Similarity=0.375 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
++.+++++|++||||||++..|+..+...+..+.+++.|..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 689999999999999999999999997666666666666443
No 238
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.44 E-value=6.5e-05 Score=62.37 Aligned_cols=22 Identities=45% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+++|+|+|||||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 689999999999999999999 5
No 239
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.43 E-value=0.0001 Score=60.63 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=31.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccC----------CccEEEECCeec
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWR----------GKLTYILDGDNC 141 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~----------~~g~i~l~g~~~ 141 (269)
-.++|+|+||||||||++.|.+..+.. ..+.+.++|.++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 468999999999999999999976531 256788888654
No 240
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.42 E-value=4.4e-05 Score=68.27 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=20.9
Q ss_pred eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHh-hc
Q 024315 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-LH 127 (269)
Q Consensus 82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~-l~ 127 (269)
+..++......+..++++ +|+|+||+|||||++.|.+. ++
T Consensus 4 l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~ 44 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 44 (301)
T ss_dssp --------------CEEE------EEEEETTSSHHHHHHHHHC----
T ss_pred CcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc
Confidence 334444455556666665 99999999999999999876 43
No 241
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.39 E-value=8.2e-05 Score=75.11 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=30.4
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
...+.++. ++|++++|+|||||||||+++.|++..
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34556777 889999999999999999999999875
No 242
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.38 E-value=0.00012 Score=67.21 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=30.7
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHH
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~ 124 (269)
+......++.+.+| +++|+|+|||||||++++|..
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 44456778888999 999999999999999999986
No 243
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.38 E-value=0.00022 Score=60.32 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+|+|+||+||||+|.++.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999884
No 244
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.33 E-value=5.4e-05 Score=67.37 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
++.+|+|.|++||||||+++.|+..+...+.....++.|++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 466899999999999999999998775322235577777765
No 245
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.32 E-value=0.00011 Score=66.83 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=36.2
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
..+.++...++.+++|+|++|+||||+++.|++.+...+.....++.
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 34556778899999999999999999999999988654433334443
No 246
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.32 E-value=0.0015 Score=54.99 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~ 135 (269)
|.+|+|-|..||||||+++.|...|. .+..++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~ 34 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIM 34 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEE
Confidence 57899999999999999999999884 4444443
No 247
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.32 E-value=0.00016 Score=67.50 Aligned_cols=32 Identities=31% Similarity=0.246 Sum_probs=28.3
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
+.+.+|++++|+||||||||||+.+|...+..
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 55677899999999999999999999998753
No 248
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.31 E-value=0.00012 Score=75.77 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=30.4
Q ss_pred eccCcceecCC-------CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 91 KRDRQQLLQQK-------GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 91 ~~~r~sl~~~~-------g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
...+.++.+.+ |++++|+|||||||||+++.+ +++.
T Consensus 771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 44556777776 899999999999999999999 7764
No 249
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.30 E-value=0.00014 Score=62.05 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+|.+++|+|++||||||+++.|++.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788999999999999999999998763
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.29 E-value=0.00016 Score=66.27 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=36.2
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
+++|+++.|.||||||||||+..++..+...+..++++++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 5789999999999999999999999987655555778887653
No 251
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.29 E-value=2.4e-05 Score=70.68 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=23.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+.++|+||||+|||||+++|++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 7899999999999999999999883
No 252
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.29 E-value=0.00018 Score=64.29 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=37.3
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.++..+ |.+++++|++|+||||++..|++.+...+..+.+++.|..+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 555655 99999999999999999999999987655556666666443
No 253
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=0.00012 Score=65.92 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
+.|+||||+||||+++.|++.+..+..|.+.+++.++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 8999999999999999999966556677777776543
No 254
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.25 E-value=7.3e-05 Score=62.26 Aligned_cols=25 Identities=44% Similarity=0.562 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 104 VIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
+|+|+|++||||||+++.|.+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999998854
No 255
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.24 E-value=0.0002 Score=60.19 Aligned_cols=35 Identities=37% Similarity=0.471 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
++.+|+|+|++||||||+++.|++ +. ..+++.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg-----~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LG-----INVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TT-----CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cC-----CEEEEccHH
Confidence 467899999999999999999988 42 345665543
No 256
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.21 E-value=0.00072 Score=58.13 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=29.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.-+.|+||+|+||||++++|++.+.. ..+.+++.++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~---~~~~i~~~~~~ 82 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDFV 82 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC---CEEEECSCSST
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC---CEEEEeHHHHH
Confidence 34889999999999999999998743 36777776654
No 257
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.20 E-value=0.00027 Score=65.63 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=33.0
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhh-----------ccCCccEEEECC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-----------HWRGKLTYILDG 138 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l-----------~~~~~g~i~l~g 138 (269)
.+.+|..++|+|+||+|||||+++|.+.- ..+..|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 34679999999999999999999999932 135567777765
No 258
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.20 E-value=0.00014 Score=70.95 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=41.6
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..+..++.+++|+.++|+||||+|||||+++|++.+.....+.+.+.+...
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 345567888999999999999999999999999998655447777776554
No 259
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.18 E-value=0.00032 Score=63.94 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWR 129 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~ 129 (269)
+++.+++|+|++|||||||++.|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 568899999999999999999999987543
No 260
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.16 E-value=0.0002 Score=67.01 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=45.0
Q ss_pred CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhccccccccccc
Q 024315 13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQ 72 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~ 72 (269)
+..|.+||++.|.|.+.+|++ +|.+++.||+|+++|+-++. |+|+||+.
T Consensus 383 ~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~~grf~l~d~~~~~-----------tv~~G~i~ 433 (434)
T 1zun_B 383 ASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNG-----------TVAAGMII 433 (434)
T ss_dssp CSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCC-----------EEEEEEEE
T ss_pred ccEeCCCCEEEEEEEECCeEEEcccccCCccceEEEEECCCCc-----------EEEEEEEe
Confidence 556999999999999999999 99999999999999998876 99999874
No 261
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.13 E-value=0.00045 Score=55.21 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=23.5
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+...+ .+.+|+|||||||||++.+|.-.+
T Consensus 19 i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444 488999999999999999998655
No 262
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.12 E-value=0.00041 Score=70.04 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=34.8
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+.+++|+.+.|+||||||||||+++|++.+. ...+.+++.++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~---~~~i~v~~~~l~ 275 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIM 275 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT---CEEEEEEHHHHS
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---CcEEEEEchHhh
Confidence 4678899999999999999999999999874 235667765543
No 263
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.10 E-value=0.00033 Score=57.69 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=29.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcc----C------CccEEEECCeec
Q 024315 104 VIWITGLSGSGKSTLACALSQALHW----R------GKLTYILDGDNC 141 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~----~------~~g~i~l~g~~~ 141 (269)
.++|+|+||+|||||++.|.+..+. + ..+.+.++|..+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 5899999999999999999987531 1 145677888654
No 264
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.07 E-value=0.0019 Score=60.66 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=38.5
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCe
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGD 139 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~ 139 (269)
+...++...-+++|+++.|.|+||+||||++..++..+.. .+..+++++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4444555556899999999999999999999999987743 34456666543
No 265
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.07 E-value=0.00017 Score=67.48 Aligned_cols=41 Identities=24% Similarity=0.158 Sum_probs=29.4
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++...+.......+.++++ +|+|+||+|||||++.|.+...
T Consensus 16 ~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 16 NLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred ecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 3444444444455566654 9999999999999999999775
No 266
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.06 E-value=0.0005 Score=56.51 Aligned_cols=28 Identities=32% Similarity=0.289 Sum_probs=24.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRG 130 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~ 130 (269)
.+++|+|++|||||||+..|.+.+...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4789999999999999999999886554
No 267
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.04 E-value=0.00038 Score=63.53 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=35.4
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
-+++|+++.|.|+||||||||+..++......+..+++++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3579999999999999999999999876655566677887654
No 268
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.03 E-value=0.00054 Score=56.41 Aligned_cols=37 Identities=30% Similarity=0.190 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECC
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDG 138 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g 138 (269)
-.+++|+|+||||||||++.|.+.+...+ -+.+..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 35789999999999999999999875443 24455444
No 269
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.02 E-value=0.00043 Score=66.21 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=35.4
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+.++.+++| +.|+||||+|||||+++|++.+. .+.+.+++.++.
T Consensus 57 ~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~ 101 (499)
T 2dhr_A 57 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 101 (499)
T ss_dssp TTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGT
T ss_pred hhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHH
Confidence 4455666777 88999999999999999999774 457778776543
No 270
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.01 E-value=0.00051 Score=57.52 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+..+.|.||+|+||||+++.++..+...+...++++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 57789999999999999999999988655555566665443
No 271
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.01 E-value=0.00026 Score=66.21 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=30.6
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
..+++.++.++.++|+|+||||||||+++|.+.
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 456899999999999999999999999999987
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.95 E-value=0.00042 Score=57.78 Aligned_cols=24 Identities=46% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.|+|+||||||||||++.|...++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987653
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.95 E-value=0.00078 Score=63.47 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
++.+++++|++|+||||++..|+..+...|..+.+++.|..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 578999999999999999999999987777778888888665
No 274
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.92 E-value=0.00046 Score=66.62 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=32.1
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
.++.+ +|..+.|+||||+|||||+++|++.+. +..+.+.+++
T Consensus 102 ~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~ 143 (543)
T 3m6a_A 102 LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVRISLGG 143 (543)
T ss_dssp HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEEECCCC
T ss_pred hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEecc
Confidence 34444 799999999999999999999999884 3344444444
No 275
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.90 E-value=0.00087 Score=58.90 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
+...+.|+||+|+||||+++.|++.+...+...+.++...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 4468999999999999999999998864444466665443
No 276
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.89 E-value=0.00073 Score=61.56 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=27.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+++|+||+|||||||++.|+..+. ...++.|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 5899999999999999999999874 345665554
No 277
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.88 E-value=0.00043 Score=65.03 Aligned_cols=48 Identities=6% Similarity=0.025 Sum_probs=42.9
Q ss_pred CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315 13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN 73 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~ 73 (269)
|..|.+||+|.|++.+.+|++ +|.+++.+|+|+++|+ +. |+|+||+..
T Consensus 387 ~~~l~~~~~~~v~~~~~~p~~~e~~~~~~~~g~f~l~d~--~~-----------tv~~G~i~~ 436 (439)
T 3j2k_7 387 PRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE--GK-----------TIAIGKVLK 436 (439)
T ss_pred cceecCCcEEEEEEEeCCeEEEeeccccccCCCEEEEEC--Cc-----------eEEEEEEEE
Confidence 445999999999999999999 9999999999999998 43 999999853
No 278
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.86 E-value=0.0003 Score=64.48 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=27.8
Q ss_pred cceecCCCeE--EEEEcCCCChHHHHHHHHHHhhc
Q 024315 95 QQLLQQKGCV--IWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 95 ~sl~~~~g~~--i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++.+++|+. +.|+|++||||||+++.|++.+.
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3455667777 99999999999999999999874
No 279
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.85 E-value=0.00072 Score=61.18 Aligned_cols=25 Identities=40% Similarity=0.596 Sum_probs=23.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+++|+||+||||||+++.|++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999999874
No 280
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.84 E-value=0.00078 Score=57.75 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=29.2
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccE
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLT 133 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~ 133 (269)
....++|.+|+|.|++||||||+++.|...+.. .+..+
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v 53 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNN 53 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCcee
Confidence 345578999999999999999999999998865 44333
No 281
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.83 E-value=0.0011 Score=54.79 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=27.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~ 137 (269)
..+.|.|++|+|||||+++|...+...+...++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67889999999999999999998854444444443
No 282
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.80 E-value=0.00065 Score=60.23 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=32.6
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+.++..+.|.||+|+||||++++|++.+. .+.+.+++.++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~l 85 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL 85 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHHH
Confidence 457788999999999999999999999774 44566665443
No 283
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.80 E-value=0.0054 Score=57.53 Aligned_cols=43 Identities=30% Similarity=0.443 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECCeecC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCR 142 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g~~~~ 142 (269)
.++.+++++|++|+||||++..|+..+... |..+.+++.|..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 457899999999999999999999988766 7788899988665
No 284
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.79 E-value=0.00066 Score=54.71 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999753
No 285
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.75 E-value=0.0015 Score=52.16 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+..+.|+|++|+||||+++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999874
No 286
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.74 E-value=0.00081 Score=59.26 Aligned_cols=36 Identities=44% Similarity=0.638 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
....+|+|+|++||||||+++.|+. +. ..+++.|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg-----~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LG-----AYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HT-----CEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC-----CcEEehhHH
Confidence 3467899999999999999999994 42 235655544
No 287
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.74 E-value=0.0017 Score=58.95 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=34.3
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhcc------CCccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHW------RGKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~------~~~g~i~l~g~~ 140 (269)
-+++|+++.|.|++|||||||+..++...-. .+.++++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4689999999999999999999999875311 245677887754
No 288
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.72 E-value=0.0013 Score=55.86 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~ 131 (269)
+|.+|+|.|++||||||+++.|...|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 5889999999999999999999999876553
No 289
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.00025 Score=63.86 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=28.7
Q ss_pred CcceecCCCeE--EEEEcCCCChHHHHHHHHHHhhcc
Q 024315 94 RQQLLQQKGCV--IWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 94 r~sl~~~~g~~--i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
..+..++.|++ +.|.||+|+||||+++++++.+..
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 33455666776 899999999999999999998853
No 290
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.70 E-value=0.0096 Score=54.07 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=37.8
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
+...++..--+++|+++.|.|++|+||||++..++..+...+..+.+++..
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 444444444579999999999999999999999988764445556666543
No 291
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.70 E-value=0.0012 Score=59.17 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=34.5
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccC------CccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~------~~g~i~l~g~~ 140 (269)
-+++|+++.|.|++||||||++..++...-.+ +..+++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 46789999999999999999999998764323 45677887654
No 292
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.65 E-value=0.0017 Score=58.58 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++.+++|+||+|||||||+..|+..+.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 356899999999999999999998774
No 293
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.64 E-value=0.00069 Score=64.80 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=31.8
Q ss_pred ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
+|...+..++.+.+| +.+|+|+||||||||+.+|...
T Consensus 47 nf~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SBTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 455566788888899 9999999999999999999765
No 294
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.60 E-value=0.0012 Score=56.29 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+|.+|+|.|..||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999999873
No 295
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.55 E-value=0.0011 Score=68.07 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=32.7
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~ 120 (269)
.|.......--..++++.++++++++|+|+|||||||||-
T Consensus 25 ~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 25 RLIVKGAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp EEEEEEECSSSCCSEEEEEESSSEEEEEESTTSSHHHHHT
T ss_pred cEEEecccccccCceeeeccCCCEEEEECCCCCcHHHHHH
Confidence 3555554555667889999999999999999999999974
No 296
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.54 E-value=0.0021 Score=51.32 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+..+.|+|++|+||||+++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3455678999999999999999999874
No 297
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.53 E-value=0.0023 Score=57.66 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=30.7
Q ss_pred CCCe--EEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECC
Q 024315 100 QKGC--VIWITGLSGSGKSTLACALSQALHWR-GKLTYILDG 138 (269)
Q Consensus 100 ~~g~--~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g 138 (269)
..+. .+.|+||+|+||||+++.+.+.+... +...+.++.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 4556 89999999999999999999988544 345566653
No 298
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.52 E-value=0.0014 Score=55.46 Aligned_cols=28 Identities=46% Similarity=0.421 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-.|..+.|+|++|+|||||+..|++..+
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4678899999999999999999988754
No 299
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.51 E-value=0.0071 Score=51.49 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..+.-+.|.||+|+||||++++++..+.. ..+.++..++
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~---~~~~~~~~~~ 75 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQV---PFLAMAGAEF 75 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC---CEEEEETTTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEechHHH
Confidence 45556889999999999999999998743 3556655444
No 300
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.0051 Score=53.30 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=30.2
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..++.-+.|.||+|+||||++++++..+. ...+.++...+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~---~~~~~v~~~~~ 87 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN---ATFIRVVGSEL 87 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT---CEEEEEEGGGG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehHHH
Confidence 35666799999999999999999999874 23455554444
No 301
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.51 E-value=0.0023 Score=52.87 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccE
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~ 133 (269)
+|.++.++|++||||||++..++..+...+..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v 34 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKV 34 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 478999999999999999866665553344333
No 302
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.49 E-value=0.0013 Score=58.96 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=30.9
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccC---CccEEEECC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDG 138 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~---~~g~i~l~g 138 (269)
...+..+.|+|++|+|||||++.+.+.+... +...+.++.
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 3567889999999999999999999987432 344556654
No 303
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.49 E-value=0.0016 Score=56.93 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++..+.|.||+|+||||+++++++.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4567889999999999999999999774
No 304
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.49 E-value=0.00082 Score=58.25 Aligned_cols=28 Identities=32% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++.+|+|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999998873
No 305
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.49 E-value=0.002 Score=59.00 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=35.4
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
+++|.++.|.|++|+|||||+..++......+..+++++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999999999999877655566788888743
No 306
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.48 E-value=0.0026 Score=57.28 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+.+++|+||+|||||||+..|+..+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356899999999999999999999874
No 307
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.47 E-value=0.0013 Score=66.71 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=34.7
Q ss_pred eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315 179 ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (269)
Q Consensus 179 v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~ 225 (269)
+..+++++++| .+++++..++.-..+.+|||+..|+.++.+.+.+.+
T Consensus 377 ~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l 424 (842)
T 2vf7_A 377 TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSAL 424 (842)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHH
Confidence 34457777777 577777777631128999999999999998877643
No 308
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.47 E-value=0.0016 Score=57.87 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
.+..+.|.||+|+|||||++++.+.+...+...+.++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 45678899999999999999999988543344555543
No 309
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.46 E-value=0.0021 Score=53.85 Aligned_cols=25 Identities=40% Similarity=0.437 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+.+|+|+|||||||++.+|.-.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4888999999999999999975554
No 310
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0052 Score=57.72 Aligned_cols=42 Identities=19% Similarity=0.052 Sum_probs=33.2
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
-++++.=+.|.||+|+|||++++++++.+.. ..+.+++..+.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---~f~~v~~s~l~ 252 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNA---TFLKLAAPQLV 252 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGC
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---CEEEEehhhhh
Confidence 4566778899999999999999999998753 35666665554
No 311
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.44 E-value=0.0019 Score=55.02 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
.+|.+|+|.|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999999999864
No 312
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0059 Score=57.25 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=32.7
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
-+.++.=+.|.||+|+|||++++++++.+. ...+.+++..+.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~~~~l~ 243 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVNGSEFV 243 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEEGGGTC
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecchhh
Confidence 355666789999999999999999999885 345666665543
No 313
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.39 E-value=0.0022 Score=57.95 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=33.2
Q ss_pred cCChHHHHH-------HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315 181 LISPYRKDR-------DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (269)
Q Consensus 181 ~~~~~~~~r-------~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r 226 (269)
..+++++++ ..++.++.++++ +++|+|+..++....+.+.+.++
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~--lllDEp~~~LD~~~~~~l~~~l~ 298 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISL--LILDEPTPYLDEERRRKLITIME 298 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCE--EEEECCCTTCCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCE--EEEECCCCCCCHHHHHHHHHHHH
Confidence 356666652 456777778888 99999999999988887776654
No 314
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.39 E-value=0.0016 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
..++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 315
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0053 Score=57.09 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=32.5
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
-++++.=+.|.||+|+|||.||+++++.+.. ..+.+++..+.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---~f~~v~~s~l~ 219 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDC---KFIRVSGAELV 219 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---EEEEEEGGGGS
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---CceEEEhHHhh
Confidence 3556666889999999999999999998753 35666665554
No 316
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.37 E-value=0.003 Score=57.43 Aligned_cols=41 Identities=37% Similarity=0.358 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
....+++|+|++|+|||||+..|+..+...+..+..++.|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 45668999999999999999999988865566566666653
No 317
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.37 E-value=0.0021 Score=50.52 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
+.+.-+.|.|++|+|||++++.|.......+...+ ++.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~ 59 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE 59 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence 45556899999999999999999987643333333 443
No 318
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.36 E-value=0.0016 Score=66.67 Aligned_cols=40 Identities=33% Similarity=0.456 Sum_probs=32.3
Q ss_pred ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHH
Q 024315 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (269)
Q Consensus 81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~ 120 (269)
.|.......--..++++.++++++++|+|+|||||||||-
T Consensus 23 ~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 23 KIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp EEEEEEECSSSCCSEEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred eEEEeccccccCCceeeeccCCcEEEEECCCCCCHHHHHH
Confidence 3555544455567789999999999999999999999973
No 319
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.36 E-value=0.0029 Score=55.48 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCC----ccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG----KLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~----~g~i~l~g~~~ 141 (269)
.++..+.|.||+|+|||++++.++..++..+ ...+.++...+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 4556789999999999999999999885432 14556665444
No 320
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.36 E-value=0.0026 Score=58.37 Aligned_cols=38 Identities=26% Similarity=0.165 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
.+..++|+|++||||||+++.|...+...+...+.+|-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45568899999999999999999877655555666653
No 321
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0064 Score=57.15 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=33.0
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
-+.++.=+.|.||+|+|||+|+++|++.+.. ..+.+++..+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---~~~~v~~s~l~ 252 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---NFIFSPASGIV 252 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGTC
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehhhhc
Confidence 4567778899999999999999999998753 35666665553
No 322
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.33 E-value=0.0013 Score=61.70 Aligned_cols=42 Identities=36% Similarity=0.544 Sum_probs=34.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
++.+++++|++|+||||++..|+..+...|..+.+++.|..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 456899999999999999999999886555667788887654
No 323
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.31 E-value=0.0037 Score=55.90 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=36.9
Q ss_pred eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
+...++..--+++|+++.|.|++|+||||++..++...-..+..++++...
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 334444444479999999999999999999999986654344456666543
No 324
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.29 E-value=0.0015 Score=66.70 Aligned_cols=29 Identities=41% Similarity=0.512 Sum_probs=26.2
Q ss_pred eccCcceecCCCeEEEEEcCCCChHHHHH
Q 024315 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (269)
Q Consensus 91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla 119 (269)
-..++++.++++++++|+|+||||||+||
T Consensus 13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 13 NLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 45667889999999999999999999998
No 325
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.28 E-value=0.0018 Score=57.51 Aligned_cols=27 Identities=33% Similarity=0.206 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++..++|+|++|+|||||++.|.+.-
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 344589999999999999999999753
No 326
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.26 E-value=0.005 Score=52.60 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=34.8
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
..+.-+++++|..|+||||++..|+..+. .+..+..++.|.-
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 35567889999999999999999998887 6667778887653
No 327
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.26 E-value=0.022 Score=50.96 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+..+.|.||+|+||||+++.+.+.+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999998874
No 328
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.25 E-value=0.0033 Score=59.74 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=30.0
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+..++| +.|+||||+|||||++++++.+..+ .+.+++.++
T Consensus 45 g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---f~~is~~~~ 85 (476)
T 2ce7_A 45 GARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---FFHISGSDF 85 (476)
T ss_dssp TCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGT
T ss_pred CCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHHHH
Confidence 3444555 7899999999999999999987432 455555444
No 329
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0092 Score=55.94 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=33.3
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
-++++.=+.|.||+|+|||.||++|++.+. ...+.+++.++.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---~~fi~v~~s~l~ 253 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS---ATFLRIVGSELI 253 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT---CEEEEEESGGGC
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC---CCEEEEEHHHhh
Confidence 356677799999999999999999999875 336667766654
No 330
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.22 E-value=0.0046 Score=52.90 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l 136 (269)
.+|.++.++|++|+||||++..++..+...+..++++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5689999999999999999888887775555555555
No 331
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.0025 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 024315 103 CVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
-.++|+|++|+|||||++.|.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 332
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.20 E-value=0.0029 Score=55.95 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=28.4
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
.+.+..+.|.||+|+|||+|+++|+..+. ...+.++.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~---~~~i~v~~ 69 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG---INPIMMSA 69 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT---CCCEEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeH
Confidence 34556788899999999999999999884 23455553
No 333
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.18 E-value=0.0031 Score=52.13 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
-.|.-+.|+|+||+||||++..|...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 46888999999999999999999873
No 334
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0071 Score=57.19 Aligned_cols=43 Identities=21% Similarity=0.101 Sum_probs=33.6
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
+-++++.=+.|.||+|+|||+|+++|++.+.. ..+.+++..+.
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---~fi~vs~s~L~ 280 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDA---TFIRVIGSELV 280 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGC
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---CeEEEEhHHhh
Confidence 34567788999999999999999999998853 35666665554
No 335
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.17 E-value=0.0037 Score=59.79 Aligned_cols=43 Identities=35% Similarity=0.448 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.++.+|+|+|++|+||||++..|+..+...|..+.+++.|..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4677999999999999999999998886556667777776544
No 336
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.15 E-value=0.0027 Score=60.13 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=42.1
Q ss_pred CCCcccCCCcceeeeee---ccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315 12 TRPAICSPSLAEVDFRT---SVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN 73 (269)
Q Consensus 12 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~ 73 (269)
.|..|.+||+|.|++.+ .+|+. +|.+++.+|+|++.| ++. |+|+|||..
T Consensus 421 ~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~--~~~-----------tv~~G~i~~ 474 (483)
T 3p26_A 421 KIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK--DGR-----------TIAAGKISE 474 (483)
T ss_dssp CCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEE--TTE-----------EEEEEEEEE
T ss_pred CccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEe--CCC-----------EEEEEEEEE
Confidence 34569999999999999 77888 999999999999955 454 999999965
No 337
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.15 E-value=0.0035 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+.|.|++|+||||+++.+++.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998875
No 338
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.15 E-value=0.0038 Score=58.32 Aligned_cols=39 Identities=26% Similarity=0.186 Sum_probs=29.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc-----------cCCccEEEECCeec
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH-----------WRGKLTYILDGDNC 141 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~-----------~~~~g~i~l~g~~~ 141 (269)
-.++|+|+||+|||||++.|.+... ++..+.+.++|..+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 4799999999999999999998642 12346777787654
No 339
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.10 E-value=0.0031 Score=58.61 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=30.4
Q ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+..+.+.+|+.++|+|++|+|||||++.|++.+.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3467889999999999999999999999999774
No 340
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.09 E-value=0.0022 Score=51.94 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 024315 104 VIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 341
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.08 E-value=0.034 Score=51.89 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=35.3
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCe
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGD 139 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~ 139 (269)
++.---+++|+++.|.|++|+||||++..++..... .+..+++++..
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 333333789999999999999999999999876643 34556676653
No 342
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.06 E-value=0.0038 Score=58.13 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=26.6
Q ss_pred ccEEEEeCChhHHHhcChhhHHHHHhcCcccccc
Q 024315 201 FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT 234 (269)
Q Consensus 201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~ 234 (269)
+..++++.|.+.|.+|..+++...+..|-+++..
T Consensus 189 ~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~ 222 (409)
T 3eph_A 189 TLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIK 222 (409)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 4557889999999999999887777777665543
No 343
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.05 E-value=0.0068 Score=50.50 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=30.2
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l 136 (269)
.++|.+++++|+.||||||.+-.++..+...+..+.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 35789999999999999999988888775555555554
No 344
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.02 E-value=0.0045 Score=56.66 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcc----------CCccEEEECCeec
Q 024315 104 VIWITGLSGSGKSTLACALSQALHW----------RGKLTYILDGDNC 141 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~----------~~~g~i~l~g~~~ 141 (269)
+++|+|++|+|||||++.|.+.... +..+.+.++|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 4899999999999999999986531 2346777877554
No 345
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.99 E-value=0.0061 Score=50.84 Aligned_cols=33 Identities=42% Similarity=0.482 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l 136 (269)
+|+|=|.-||||||.++.|...|...|..++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578889999999999999999997666555544
No 346
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.93 E-value=0.0061 Score=52.42 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
.+.-+.|.|++|+|||++++.|...+...+...+.++.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 34568899999999999999999877533344566653
No 347
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.91 E-value=0.01 Score=52.93 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
.++.-+.|.||+|+|||+++++++..+. ...+.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~v~~~ 85 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS 85 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT---CEEEEEEHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC---CCEEEEchH
Confidence 4556789999999999999999999774 234445443
No 348
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.88 E-value=0.0038 Score=52.99 Aligned_cols=33 Identities=33% Similarity=0.349 Sum_probs=26.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.|+|+|..||||||+++.|.. +. ..++|.|.+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g-----~~vidaD~ia 43 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RG-----ASLVDTDLIA 43 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TT-----CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC-----CcEEECcHHH
Confidence 589999999999999999987 43 3467777643
No 349
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.87 E-value=0.013 Score=55.23 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.-+.|+||+|+||||++++|++.+.. ..+.++...+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~---~~~~v~~~~~ 86 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF 86 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEGGGG
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC---Cceeecchhh
Confidence 34789999999999999999998853 3555655443
No 350
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.84 E-value=0.0079 Score=49.91 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.-..++|+|.+|+|||||++.|.+.+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 445789999999999999999998764
No 351
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.83 E-value=0.0056 Score=52.96 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.0
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++...+.|.||+|+||||++++++..+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35566789999999999999999999764
No 352
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.83 E-value=0.0055 Score=54.87 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.++.-+.|.||+|+|||+++++++..+. +...+.+++.++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l 82 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL 82 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHH
Confidence 4556788999999999999999999772 233445554433
No 353
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.83 E-value=0.0051 Score=57.08 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=24.1
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.+..+..++|+|+||+|||||+++|.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3456788999999999999999999976
No 354
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.83 E-value=0.0072 Score=53.89 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEEC
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD 137 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~ 137 (269)
+.-+.|.||+|+|||+|+++|+..+. ..+...+++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67899999999999999999998876 5554454444
No 355
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.0054 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+.|.|++|+||||+++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999998764
No 356
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.78 E-value=0.0045 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.-.|+|+|++|+|||||++.|.+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 34689999999999999999998654
No 357
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.78 E-value=0.005 Score=55.75 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
++..+.|.||+|+|||+++++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456788999999999999999999874
No 358
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.76 E-value=0.0054 Score=53.47 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.+.-+.|.||+|+|||++++.++..+.. ..+.++....
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~i~~~~~ 86 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF 86 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEcchhc
Confidence 4557889999999999999999998842 3555655443
No 359
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.74 E-value=0.0032 Score=63.53 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.6
Q ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
++.+.++..+.|+||||+|||||+++|++.+. ...+.+++.++
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l 547 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---CCCCCCCCSSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC---CCEEEEechHh
Confidence 34567888999999999999999999999884 23455555544
No 360
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.73 E-value=0.0087 Score=53.29 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.2
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
-+++|.++.|.|++||||||++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999864
No 361
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.73 E-value=0.007 Score=55.52 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=34.5
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
+++|.++.|.|++|+|||||+..++......+..+++++.+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 578999999999999999999998876644556677887654
No 362
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.72 E-value=0.0059 Score=47.73 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 363
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.70 E-value=0.006 Score=51.37 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.1
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHh-hccCCccEEEEC
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQA-LHWRGKLTYILD 137 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~-l~~~~~g~i~l~ 137 (269)
+++|+++.|.|++|+||||++..++-. ....+...+++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 478999999999999999999877643 222233445554
No 364
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.70 E-value=0.02 Score=51.83 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.++.-+.|.||+|+||||++++|+..+. ...+.++..++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~i~~~~l 153 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG---ATFFSISASSL 153 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT---CEEEEEEGGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC---CeEEEEehHHh
Confidence 5667899999999999999999998763 33555655444
No 365
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.67 E-value=0.0064 Score=49.53 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=20.4
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
+..++..++. .++++|++|+|||||++.+.+.
T Consensus 15 ~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 15 ASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3445554444 6789999999999999999873
No 366
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.66 E-value=0.0066 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.+.+.-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 367
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.65 E-value=0.0067 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|++|+|||||++.+.+.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 368
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.65 E-value=0.006 Score=47.28 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|.+|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998754
No 369
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0072 Score=48.82 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.-.++++|++|+|||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998754
No 370
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.64 E-value=0.0024 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-+.|.||+|+||||++++|++.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 377999999999999999999875
No 371
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.62 E-value=0.0071 Score=54.40 Aligned_cols=25 Identities=44% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.|.-++|+|+||+||||++..|.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 6889999999999999999999874
No 372
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.60 E-value=0.0082 Score=47.54 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
++.-.++++|++|+|||||++.|.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999864
No 373
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.59 E-value=0.007 Score=54.37 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+|..+.|.||+|+|||++++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999999885
No 374
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.58 E-value=0.0072 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|.+|+|||||++.|.+.-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358899999999999999998653
No 375
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.58 E-value=0.0078 Score=54.18 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+..+.|.||+|+||||+++.++..+.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466899999999999999999998773
No 376
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.57 E-value=0.0065 Score=56.89 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECC
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDG 138 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g 138 (269)
+..+.|.||+|+|||||++++++.+.. ++...+.++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 467899999999999999999998742 2334555554
No 377
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.54 E-value=0.0062 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-.++|+|++|||||||++.|.+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999998653
No 378
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.53 E-value=0.0077 Score=47.06 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|++|+|||||++.|.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 379
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.51 E-value=0.008 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.|.+.-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998765
No 380
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.51 E-value=0.012 Score=59.26 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=31.5
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
+-++++.-+.|.||+|+|||+|++++++.+. ...+.+++.+
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~~~ 273 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPE 273 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEhHH
Confidence 3456777899999999999999999998764 3355565543
No 381
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.50 E-value=0.0073 Score=51.22 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+++...+.|.||+|+||||++.+|++.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445689999999999999999999873
No 382
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.50 E-value=0.008 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.|.+.-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998754
No 383
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0073 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 024315 103 CVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
-.++++|.+|+|||||++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 384
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.49 E-value=0.0081 Score=47.09 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|++|+|||||++.+.+.-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998653
No 385
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.48 E-value=0.0071 Score=54.85 Aligned_cols=31 Identities=19% Similarity=0.066 Sum_probs=23.2
Q ss_pred ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
..+.++.++ .|+++|.+|||||||++.|.+.
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 344445554 8899999999999999999994
No 386
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.0075 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhhc
Q 024315 105 IWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 105 i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+.|.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999874
No 387
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=95.47 E-value=0.0072 Score=56.46 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=42.6
Q ss_pred CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315 13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN 73 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~ 73 (269)
|..|..||++.|.|.+.+|++ +|.+++.+|.|+++|. +. |+|+|||..
T Consensus 377 ~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~--~~-----------tv~~G~i~~ 426 (435)
T 1jny_A 377 PQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM--GK-----------TVGVGIIVD 426 (435)
T ss_dssp CSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET--TE-----------EEEEEEEEE
T ss_pred ccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEEEC--Ce-----------EEEEEEEee
Confidence 456888999999999999999 8999999999999996 33 999999864
No 388
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.46 E-value=0.0085 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|++|+|||||++.|.+.-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998654
No 389
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.45 E-value=0.0085 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|.+|+|||||++.|.+.-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998743
No 390
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.44 E-value=0.0079 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|++|+|||||++.|.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998654
No 391
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.43 E-value=0.008 Score=54.61 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~ 139 (269)
.+..+.|+||+|+||||+++.|+..+. ...+.++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~---~~~~~~~~~ 106 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD---IPIAISDAT 106 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC---CCEEEecch
Confidence 445688999999999999999999874 234555443
No 392
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.43 E-value=0.0082 Score=56.52 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=42.4
Q ss_pred CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315 13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN 73 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~ 73 (269)
|..|..||++.|.|.+.+|++ +|.+++.+|+|+++|. +. |+|+|||..
T Consensus 389 ~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~--~~-----------tv~~G~v~~ 438 (458)
T 1f60_A 389 PKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDM--RQ-----------TVAVGVIKS 438 (458)
T ss_dssp CSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEET--TE-----------EEEEEEEEE
T ss_pred ccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEEEEC--Ce-----------EEEEEEEEe
Confidence 456889999999999999998 9999999999999993 32 999999865
No 393
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.42 E-value=0.0072 Score=47.63 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|++|+|||||++.|.+.-
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 358999999999999999998654
No 394
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.42 E-value=0.012 Score=46.14 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.-.++++|++|+|||||++.|.+.-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999997643
No 395
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.39 E-value=0.009 Score=54.52 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=23.3
Q ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHH
Q 024315 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (269)
Q Consensus 95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~ 124 (269)
..+...+ .+.+|+|+|||||||++.+|.=
T Consensus 19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 19 SRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 4455444 4788999999999999999874
No 396
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.38 E-value=0.0086 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|.+|+|||||++.|.+.-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
No 397
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.36 E-value=0.0089 Score=59.00 Aligned_cols=31 Identities=29% Similarity=0.166 Sum_probs=26.3
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+.++++..++|+|++|+|||||++.|.+...
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 4567899999999999999999999997654
No 398
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.36 E-value=0.0095 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 024315 104 VIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.++++|.+|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 399
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.34 E-value=0.0079 Score=47.21 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 024315 104 VIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999753
No 400
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.34 E-value=0.016 Score=48.12 Aligned_cols=28 Identities=29% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHW 128 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~ 128 (269)
+...++|+|.+|+|||||++.|...++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4567899999999999999999987653
No 401
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.33 E-value=0.0091 Score=54.19 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++.-+.|.||+|+|||+++++++..+.
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455688999999999999999999874
No 402
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.32 E-value=0.0099 Score=47.44 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.|.+.-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998754
No 403
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.30 E-value=0.01 Score=52.73 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
...+.|.||+|+||||+++.++..+.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999998764
No 404
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.30 E-value=0.0099 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|++|+|||||++.|.+.-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998743
No 405
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.29 E-value=0.022 Score=48.36 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=30.8
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l 136 (269)
-++|.+..++|+.||||||.+-.++..+...+..++++
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 46799999999999999999888887776555555555
No 406
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.24 E-value=0.015 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-.++++|++|+|||||++.|.+.-
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4468999999999999999998763
No 407
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.23 E-value=0.017 Score=54.27 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=34.7
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
-+++|+++.|.|++|+||||++..++...-..+..+.++....
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3689999999999999999999999876644455677776543
No 408
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.21 E-value=0.011 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.|+++|.+|+|||||++.|.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 409
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=95.20 E-value=0.0067 Score=57.27 Aligned_cols=48 Identities=4% Similarity=-0.071 Sum_probs=42.1
Q ss_pred CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315 13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN 73 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~ 73 (269)
|..|..||++.|.|.+.+|++ +|.+++.||+|+++|. +. |+|+|||..
T Consensus 415 ~~~l~~g~~~~v~l~~~~p~~~~~~~~~~~~grf~lrd~--~~-----------Tv~~G~i~~ 464 (467)
T 1r5b_A 415 PMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQ--GT-----------TVAVGKVVK 464 (467)
T ss_dssp CSBCCTTCBCCEEEEEEEEEECCCTTTCHHHHEEEEECS--SS-----------CEEEEEEEE
T ss_pred ccccCCCCEEEEEEEECcEEEEEEcCcCCCCccEEEEEC--Ce-----------EEEEEEEEE
Confidence 446889999999999999999 9999999999999997 32 899998853
No 410
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.20 E-value=0.0076 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.6
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALS 123 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~ 123 (269)
.+..|+.+.++|++||||||++..+.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 34578999999999999999876654
No 411
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.19 E-value=0.011 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|.+|+|||||++.|.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998754
No 412
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|.+|+|||||++.|.+.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 413
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.19 E-value=0.011 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.|.+.-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 358899999999999999998643
No 414
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.17 E-value=0.0083 Score=49.23 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=24.2
Q ss_pred cCcceecCCCeEEEEEcCCCChHHHHHHHHHH
Q 024315 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (269)
Q Consensus 93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~ 124 (269)
+..++..++. .++++|++|+|||||++.+.+
T Consensus 17 ~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 17 QFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 3445555555 478999999999999999975
No 415
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.17 E-value=0.012 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|.+|+|||||++.+.+.-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997644
No 416
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.17 E-value=0.02 Score=53.52 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
.++.-+.|.||+|+|||+|+++++..+. +...+.++..+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~ 203 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSD 203 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC-
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHH
Confidence 4557789999999999999999999772 22344455433
No 417
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.16 E-value=0.012 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.|+++|++|+|||||++.|.+.-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 458899999999999999998643
No 418
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.15 E-value=0.0097 Score=46.54 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|.+|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999997543
No 419
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.15 E-value=0.011 Score=48.72 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-.++|+|++|+|||||++.|.+..+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999999999999999998654
No 420
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.15 E-value=0.011 Score=46.65 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.|.+.-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998643
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.012 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-.++++|.+|+|||||++.|.+.-.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3589999999999999999987543
No 422
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.12 E-value=0.012 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.|.+.-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 423
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.11 E-value=0.034 Score=50.78 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
.++.-+.|.||+|+|||+++++++..+. ...+.++...+
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~---~~~~~v~~~~l 184 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESN---ATFFNISAASL 184 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTT---CEEEEECSCCC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhc---CcEEEeeHHHh
Confidence 3467899999999999999999998764 33556665444
No 424
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.11 E-value=0.013 Score=52.92 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=30.8
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCee
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDN 140 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~ 140 (269)
+.+| ++.|.|++|+|||||+-.++...... +...+++++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3678 89999999999999987776554332 45677888754
No 425
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.04 E-value=0.016 Score=46.76 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
..-.++++|++|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999865
No 426
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.04 E-value=0.012 Score=46.53 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 024315 104 VIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.++++|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999754
No 427
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.03 E-value=0.0095 Score=47.68 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++++|.+|+|||||++.+.+.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998754
No 428
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.02 E-value=0.012 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.|.+.-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998654
No 429
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.00 E-value=0.013 Score=47.50 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.|+|+|++|+|||||++.|.+.-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 458999999999999999998653
No 430
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.99 E-value=0.014 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|.+|+|||||++.+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999998877654
No 431
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.99 E-value=0.014 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.061 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.++|+|.+|+|||||++.|.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999988654
No 432
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.99 E-value=0.012 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-.|+|+|.+|+|||||++.|.+.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4468999999999999999998753
No 433
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.99 E-value=0.018 Score=46.18 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
--.++++|.+|+|||||++.|.+.-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3468899999999999999998753
No 434
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.98 E-value=0.023 Score=54.12 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
....+.|.||+|+||||+++++++.+. ...+.++..+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in~s~ 112 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNASD 112 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEeCCC
Confidence 346889999999999999999999873 3455665433
No 435
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.96 E-value=0.017 Score=45.75 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.-.++++|.+|+|||||++.+.+.-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468899999999999999998643
No 436
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.96 E-value=0.011 Score=48.90 Aligned_cols=30 Identities=33% Similarity=0.279 Sum_probs=23.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (269)
Q Consensus 105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g 138 (269)
+.|+|++||||||++..|+.. +...+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEec
Confidence 679999999999999999864 233555553
No 437
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.96 E-value=0.014 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-.++|+|.+|+|||||++.|.+.-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 438
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.95 E-value=0.013 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|++|+|||||++.|.+.-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 439
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.95 E-value=0.015 Score=46.43 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
--.++|+|.+|+|||||++.|.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458899999999999999998654
No 440
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.94 E-value=0.015 Score=46.28 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|.+|+|||||++.+.+.-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998643
No 441
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.93 E-value=0.016 Score=54.38 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~ 141 (269)
++.-+.|.||+|+|||+++++|++.+... ...+.+++..+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~~~~ 101 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVGSEV 101 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEGGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeHHHH
Confidence 45568899999999999999999988521 23445554433
No 442
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.92 E-value=0.015 Score=46.90 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|.+|+|||||++.|.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 443
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.91 E-value=0.012 Score=52.28 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
|.-+.|.||+|+|||++++.|+..+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 55788999999999999999999774
No 444
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.90 E-value=0.0064 Score=47.66 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.+.-+.|.|++|+|||++++.|....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 344558899999999999999987654
No 445
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.90 E-value=0.013 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 024315 103 CVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
-.++|+|.+|+|||||++.|.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999974
No 446
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.88 E-value=0.015 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++|+|++|+|||||++.|.+.-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 447
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.88 E-value=0.017 Score=46.52 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
+.-.++++|++|+|||||++.|.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999764
No 448
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.014 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.-.++|+|.+|+|||||++.|.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999999874
No 449
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.87 E-value=0.014 Score=52.84 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
+.+|.++.|.|++|+|||||+..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 467788899999999999999999865
No 450
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.84 E-value=0.014 Score=53.46 Aligned_cols=23 Identities=48% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++|+|++|+|||||+++|.+.-
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999863
No 451
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.84 E-value=0.012 Score=46.85 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQ 124 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~ 124 (269)
++.-.++++|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556789999999999999998863
No 452
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.83 E-value=0.017 Score=46.60 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|.+|+|||||++.|.+.-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998643
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.015 Score=47.04 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|++|+|||||++.|.+.-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 454
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.80 E-value=0.015 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
..+.|.||+|+||||+++.|++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3588999999999999999999874
No 455
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.79 E-value=0.024 Score=49.90 Aligned_cols=43 Identities=30% Similarity=0.273 Sum_probs=35.9
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
..+++.+|+++|..|+||||++-.|+..+...|..+.++|.|.
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4457889999999999999999999999977778888998875
No 456
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.012 Score=57.59 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=40.7
Q ss_pred CCcccCCCcceeeeee---ccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315 13 RPAICSPSLAEVDFRT---SVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN 73 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~ 73 (269)
|..|.+|++|.|.|.+ .+|++ +|.+++.+|+|++.| ++. |+|+|||..
T Consensus 556 ~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~--~~~-----------Tva~G~i~~ 608 (611)
T 3izq_1 556 IRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK--DGR-----------TIAAGKISE 608 (611)
T ss_dssp SCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEES--SSS-----------EEEEEEEEE
T ss_pred ccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEe--CCC-----------EEEEEEEEE
Confidence 4469999999999999 77887 999999999999954 343 999999864
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.76 E-value=0.016 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 024315 103 CVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
-.++|+|.+|+|||||++.|.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999843
No 458
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.75 E-value=0.022 Score=52.10 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWR 129 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~ 129 (269)
++...+.|+|.+||||||+++.| +.++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~-~i~~~~ 59 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM-RIIHGQ 59 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH-HHHHSC
T ss_pred cCccEEEEECCCCCcHHHHHHHH-HHHhCC
Confidence 45567899999999999999999 445444
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.71 E-value=0.018 Score=46.53 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|.+|+|||||++.|.+.-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999998654
No 460
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.018 Score=46.20 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++|+|++|+|||||++.|.+.-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 461
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.71 E-value=0.016 Score=47.25 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.+.-.++|+|.+|+|||||++.|.+.-
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 345568999999999999999998754
No 462
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.71 E-value=0.024 Score=53.76 Aligned_cols=41 Identities=24% Similarity=0.092 Sum_probs=33.3
Q ss_pred cCCCeEEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECCe
Q 024315 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGD 139 (269)
Q Consensus 99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g~ 139 (269)
+++|+++.|.|++|+||||++..++...-.. +..+++++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 6899999999999999999999998766433 5556677654
No 463
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.70 E-value=0.018 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
-.++++|.+|+|||||++.+.+.-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458999999999999999998753
No 464
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.69 E-value=0.017 Score=51.89 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQ 124 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~ 124 (269)
-.|.-+.|+|+||+||||++..|..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4678899999999999999988765
No 465
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.69 E-value=0.021 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 102 GCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
+..+.|.||+|+||||+++.+++.+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999999875
No 466
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.68 E-value=0.012 Score=51.88 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+..+.|.|++|+||||+++.+...+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999998774
No 467
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.68 E-value=0.022 Score=46.35 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=22.1
Q ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 98 LQQKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-++.-.++|+|.+|+|||||++.|.+.-
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 33455678999999999999999998654
No 468
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.68 E-value=0.016 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++|+|++|+|||||++.|.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 469
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.017 Score=46.66 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-.++|+|.+|+|||||++.|.+.-.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCC
Confidence 3589999999999999999987653
No 470
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.66 E-value=0.017 Score=51.20 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~ 137 (269)
+.+..+.|+|++|+|||++++.|.......+...+.++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 45567889999999999999999986643333344454
No 471
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.64 E-value=0.019 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.-.++|+|.+|+|||||++.|.+.-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999998643
No 472
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.025 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.-.++++|.+|+|||||++.|.+.-
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568999999999999999998753
No 473
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.61 E-value=0.019 Score=46.00 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
++.-.++++|++|+|||||++.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999754
No 474
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.60 E-value=0.017 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++|+|.+|||||||++.|.+.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57899999999999999998863
No 475
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.59 E-value=0.018 Score=47.01 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 024315 104 VIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.++|+|++|+|||||++.|.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.57 E-value=0.02 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-.++++|.+|+|||||++.+.+.-
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 477
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.57 E-value=0.02 Score=46.76 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
...-.++|+|++|+|||||++.|.+.-
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 344578999999999999999998643
No 478
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.56 E-value=0.037 Score=47.41 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=31.7
Q ss_pred CCCeE-EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315 100 QKGCV-IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (269)
Q Consensus 100 ~~g~~-i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~ 140 (269)
+.|++ +.+.|++|+||||++-.++..+...|..+++++-|.
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35555 788899999999999999988866676666666553
No 479
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.56 E-value=0.019 Score=47.44 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315 103 CVIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-.++|+|.+|+|||||++.|.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3589999999999999999986543
No 480
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.52 E-value=0.019 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
+.-.++|+|.+|+|||||++.|.+.-
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578999999999999999998753
No 481
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.51 E-value=0.021 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.-.|+|+|.+|+|||||++.|.+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999864
No 482
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.023 Score=45.62 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
++.-.++++|.+|+|||||++.|.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999999853
No 483
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.49 E-value=0.022 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-.++|+|.+|+|||||++.+.+.-
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3468999999999999999988644
No 484
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.47 E-value=0.011 Score=52.52 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
-+.|.|++|+|||++++.+...+.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 388999999999999999999774
No 485
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.46 E-value=0.02 Score=50.84 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 024315 104 VIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~ 125 (269)
.++|+|.+|+|||||++.|.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 486
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.46 E-value=0.022 Score=46.43 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 024315 103 CVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
-.++|+|.+|+|||||++.+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 487
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.46 E-value=0.021 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-.|+++|.+|+|||||++.|.+.-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
No 488
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.46 E-value=0.024 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 024315 103 CVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.+++|+|..||||||+++.|...+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 378999999999999999998864
No 489
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.43 E-value=0.017 Score=52.41 Aligned_cols=27 Identities=37% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 100 ~~g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
...-.++++|++|+|||||++.|.+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998754
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.43 E-value=0.021 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-.++|+|.+|+|||||++.|.+.-
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 491
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.42 E-value=0.024 Score=51.96 Aligned_cols=24 Identities=50% Similarity=0.551 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
+..++|+|.+|+|||||+++|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.40 E-value=0.038 Score=55.07 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=31.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
.+.|+||+|+|||+++++|+..+...+...+.++...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 688999999999999999999886555566777654443
No 493
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.40 E-value=0.023 Score=49.64 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q 024315 104 VIWITGLSGSGKSTLACALSQALH 127 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~~l~ 127 (269)
.+.|.||+|+||||+++.+++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 488999999999999999999874
No 494
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.39 E-value=0.025 Score=46.43 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315 102 GCVIWITGLSGSGKSTLACALSQAL 126 (269)
Q Consensus 102 g~~i~l~G~sGsGKSTla~~L~~~l 126 (269)
.-.++++|.+|+|||||++.|.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999998754
No 495
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.35 E-value=0.033 Score=56.32 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=32.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~ 142 (269)
..+.|+||+|+|||++++.|...++..+...+.++.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 5788999999999999999999986555667788765443
No 496
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.35 E-value=0.018 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 024315 103 CVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
-.|+|+|.+|+|||||++.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999754
No 497
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.33 E-value=0.021 Score=49.59 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 024315 104 VIWITGLSGSGKSTLACALSQ 124 (269)
Q Consensus 104 ~i~l~G~sGsGKSTla~~L~~ 124 (269)
.++|+|.+|+|||||++.|.+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999754
No 498
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.32 E-value=0.012 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315 101 KGCVIWITGLSGSGKSTLACALSQA 125 (269)
Q Consensus 101 ~g~~i~l~G~sGsGKSTla~~L~~~ 125 (269)
..-.|+|+|.+|+|||||++.|.+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999875
No 499
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.32 E-value=0.018 Score=47.11 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 024315 103 CVIWITGLSGSGKSTLACALSQ 124 (269)
Q Consensus 103 ~~i~l~G~sGsGKSTla~~L~~ 124 (269)
-.++|+|.+|+|||||++.+.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999964
No 500
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.025 Score=50.86 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=34.2
Q ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHHhhccC-------CccEEEECCeec
Q 024315 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWR-------GKLTYILDGDNC 141 (269)
Q Consensus 97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-------~~g~i~l~g~~~ 141 (269)
+...++..+.|.||+|+|||++++.+++.+... .-..+.+++..+
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 345678888999999999999999999988521 124667776544
Done!