BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024316
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 287 bits (734), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 147/261 (56%), Positives = 182/261 (69%), Gaps = 4/261 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
E KHFVLVHG HG W WYKLK L A GH+VTA+DLAASG ++++IE++ T + Y+ PL
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPL 62
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQV 127
E+ SL A+EKVILVGHSLGG L LA +K+P KI AVF+ AF PD+ H SFVLEQ
Sbjct: 63 XELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQ- 121
Query: 128 PYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRP 187
Y+E+ E+ WLDTQF + S FG +FL K+YQLC PEDL LA LVRP
Sbjct: 122 -YNERTPAEN--WLDTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPEDLALASSLVRP 178
Query: 188 GSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
S+F ++LSK F+DE +GSVKRVY+VC ED G+P++FQ W I N V E +EIKG DH
Sbjct: 179 SSLFXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADH 238
Query: 248 MAMLSDPQKLCDCLSQISLKY 268
A L +PQKLC L +I+ KY
Sbjct: 239 XAXLCEPQKLCASLLEIAHKY 259
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 286 bits (733), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/261 (56%), Positives = 182/261 (69%), Gaps = 4/261 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
E KHFVLVHG HG W WYKLK L A GH+VTA+DLAASG ++++IE++ T + Y+ PL
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPL 62
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQV 127
E+ SL A+EKVILVGHSLGG L LA +K+P KI AVF+ AF PD+ H SFVLEQ
Sbjct: 63 XELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQ- 121
Query: 128 PYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRP 187
Y+E+ E+ WLDTQF + S FG +FL K+YQLC PEDL LA LVRP
Sbjct: 122 -YNERTPAEN--WLDTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPEDLALASSLVRP 178
Query: 188 GSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
S+F ++LSK F+DE +GSVKRVY+VC ED G+P++FQ W I N V E +EIKG DH
Sbjct: 179 SSLFXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADH 238
Query: 248 MAMLSDPQKLCDCLSQISLKY 268
A L +PQKLC L +I+ KY
Sbjct: 239 XAXLCEPQKLCASLLEIAHKY 259
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 280 bits (716), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 135/258 (52%), Positives = 182/258 (70%), Gaps = 4/258 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
++KHFVLVHG GAW WYKLK L + GH+VTAVDL+A+GIN +R++++HTF YSEPL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQV 127
MEV+AS+P +EKV+L+GHS GG++L LA + +P KISVAVF++A MPD H ++ E+
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEK- 127
Query: 128 PYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRP 187
Y+EK D LD+QFS +SM+ G +F+ +K++Q C EDLELAKML RP
Sbjct: 128 -YNEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRP 184
Query: 188 GSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
GS+F +L+K KFS E YGSVKR Y+ C ED P +FQ W +++ ++V EIK D
Sbjct: 185 GSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADA 244
Query: 248 MAMLSDPQKLCDCLSQIS 265
M MLS P+++C CL IS
Sbjct: 245 MGMLSQPREVCKCLLDIS 262
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 280 bits (716), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 135/258 (52%), Positives = 182/258 (70%), Gaps = 4/258 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
++KHFVLVHG GAW WYKLK L + GH+VTAVDL+A+GIN +R++++HTF YSEPL
Sbjct: 3 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 62
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQV 127
MEV+AS+P +EKV+L+GHS GG++L LA + +P KISVAVF++A MPD H ++ E+
Sbjct: 63 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEK- 121
Query: 128 PYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRP 187
Y+EK D LD+QFS +SM+ G +F+ +K++Q C EDLELAKML RP
Sbjct: 122 -YNEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRP 178
Query: 188 GSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
GS+F +L+K KFS E YGSVKR Y+ C ED P +FQ W +++ ++V EIK D
Sbjct: 179 GSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADA 238
Query: 248 MAMLSDPQKLCDCLSQIS 265
M MLS P+++C CL IS
Sbjct: 239 MGMLSQPREVCKCLLDIS 256
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/258 (52%), Positives = 182/258 (70%), Gaps = 4/258 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
++KHFVLVHG GAW WYKLK L + GH+VTAVDL+A+GIN +R++++HTF YSEPL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQV 127
MEV+AS+P +EKV+L+GHS GG++L LA + +P KISVAVF++A MPD H ++ E+
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEK- 127
Query: 128 PYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRP 187
Y+EK D LD+QFS +SM+ G +F+ +K++Q C EDLELAKML RP
Sbjct: 128 -YNEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRP 184
Query: 188 GSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
GS+F +L+K KFS E YGSVKR Y+ C ED P +FQ W +++ ++V EIK DH
Sbjct: 185 GSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADH 244
Query: 248 MAMLSDPQKLCDCLSQIS 265
M MLS P+++ CL IS
Sbjct: 245 MGMLSQPREVXKCLLDIS 262
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 134/258 (51%), Positives = 181/258 (70%), Gaps = 4/258 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
++KHFVLVHG GAW WYKLK L + GH+VTAVDL+A+GIN +R++++HTF YSEPL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQV 127
MEV+AS+P +EKV+L+GHS GG++L LA + +P KISVAVF++A MPD H ++ E+
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEK- 127
Query: 128 PYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRP 187
Y+EK D LD+QFS +SM+ G +F+ +K++Q C EDLELAKML RP
Sbjct: 128 -YNEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRP 184
Query: 188 GSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
GS+F +L+K KFS E YGSVKR Y+ C ED P +FQ W +++ ++V EIK DH
Sbjct: 185 GSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADH 244
Query: 248 MAMLSDPQKLCDCLSQIS 265
M MLS P+++ L IS
Sbjct: 245 MGMLSQPREVXKXLLDIS 262
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 274 bits (700), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 145/263 (55%), Positives = 179/263 (68%), Gaps = 7/263 (2%)
Query: 7 MEEKH-FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
ME KH FVLVH HGAW WYKLK L + GHRVTAV+LAASGI+ + I+ V T YS+
Sbjct: 1 MERKHHFVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSK 60
Query: 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLE 125
PL+E L SLP E+VILVG S GG+ +ALAAD FP KI V VF+ AF+PDTTH PS VL+
Sbjct: 61 PLIETLKSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLD 120
Query: 126 QVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLV 185
+ Y E G D +FS + N + + G +F+ ++YQ CP ED ELAKML
Sbjct: 121 K--YMEMPG----GLGDCEFSSHETRNGTMSLLKMGPKFMKARLYQNCPIEDYELAKMLH 174
Query: 186 RPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGG 245
R GS F ++LSK+ KFS+EGYGSV+RVY++ ED +P F WMI N+ V++V EI GG
Sbjct: 175 RQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNVSKVYEIDGG 234
Query: 246 DHMAMLSDPQKLCDCLSQISLKY 268
DHM MLS PQKL D LS I+ Y
Sbjct: 235 DHMVMLSKPQKLFDSLSAIATDY 257
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 223 bits (568), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 166/258 (64%), Gaps = 6/258 (2%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L A GH+VTA+DLAASG++ ++IE++ +F YSEPL+
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYS 130
L +LP EKVILVG S GG+ +A+AADK+ KI+ AVF + +PDT H PS+V+
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVV------ 118
Query: 131 EKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSM 190
+K+ + W DT + + G L +Y LC PE+ ELAKML R GS+
Sbjct: 119 DKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSL 178
Query: 191 FIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAM 250
F + L+K F+ EGYGS+K++Y+ ++D +FQ W I+NY ++V +++GGDH+
Sbjct: 179 FQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHLLQ 238
Query: 251 LSDPQKLCDCLSQISLKY 268
L+ +++ + L +++ Y
Sbjct: 239 LTKTKEIAEILQEVADTY 256
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 165/258 (63%), Gaps = 6/258 (2%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L A GH+VTA+DLAASG++ ++IE++ +F YSEPL+
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYS 130
L +LP EKVILVG S GG+ +A+AADK+ KI+ AVF + +PDT H PS+V+
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYXEKIAAAVFHNSVLPDTEHCPSYVV------ 118
Query: 131 EKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSM 190
+K+ + W DT + + G L +Y LC PE+ ELAKML R GS+
Sbjct: 119 DKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSL 178
Query: 191 FIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAM 250
F + L+K F+ EGYGS+K++Y+ ++D +FQ W I+NY ++V +++GGDH
Sbjct: 179 FQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQ 238
Query: 251 LSDPQKLCDCLSQISLKY 268
L+ +++ + L +++ Y
Sbjct: 239 LTKTKEIAEILQEVADTY 256
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 165/258 (63%), Gaps = 6/258 (2%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L A GH+VTA+DLAASG++ ++IE++ +F YSEPL+
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYS 130
L +LP EKVILVG S GG+ +A+AADK+ KI+ AVF + +PDT H PS+V+
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVV------ 118
Query: 131 EKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSM 190
+K+ + W DT + + G L +Y LC PE+ ELAKML R GS+
Sbjct: 119 DKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSL 178
Query: 191 FIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAM 250
F + L+K F+ EGYGS+K++Y+ ++D +FQ W I+NY ++V +++GGDH
Sbjct: 179 FQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQ 238
Query: 251 LSDPQKLCDCLSQISLKY 268
L+ +++ + L +++ Y
Sbjct: 239 LTKTKEIAEILQEVADTY 256
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 165/258 (63%), Gaps = 6/258 (2%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L A GH+VTA+DLAASG++ ++IE++ +F YSEPL+
Sbjct: 4 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 63
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYS 130
L +LP EKVILVG S GG+ +A+AADK+ KI+ AVF + +PDT H PS+V+
Sbjct: 64 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVV------ 117
Query: 131 EKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSM 190
+K+ + W DT + + G L +Y LC PE+ ELAKML R GS+
Sbjct: 118 DKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSL 177
Query: 191 FIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAM 250
F + L+K F+ EGYGS+K++Y+ ++D +FQ W I+NY ++V +++GGDH
Sbjct: 178 FQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQ 237
Query: 251 LSDPQKLCDCLSQISLKY 268
L+ +++ + L +++ Y
Sbjct: 238 LTKTKEIAEILQEVADTY 255
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 221 bits (563), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 159/261 (60%), Gaps = 7/261 (2%)
Query: 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLM 68
+KHFVLVH HGAWCWYK+ A + + GH VTA+DL ASGIN K+ + F Y PLM
Sbjct: 12 KKHFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 69 EVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVP 128
E +ASLPA EK+ILVGH+LGG+ ++ A + FP KISVAVF++ MP ++
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPN------IDATT 125
Query: 129 YSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPG 188
K G LD + + +++ G +FL +Y L P EDL LA LVRP
Sbjct: 126 VCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPL 185
Query: 189 SMFI-DNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
+++ +++SKE S + YGSVKRV++V E+ L K+F MI+ P +EV EI+G DH
Sbjct: 186 YLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDH 245
Query: 248 MAMLSDPQKLCDCLSQISLKY 268
+ M+S PQ+L L I+ KY
Sbjct: 246 VTMMSKPQQLFTTLLSIANKY 266
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 221 bits (562), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 159/261 (60%), Gaps = 7/261 (2%)
Query: 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLM 68
+KHFVLVH HGAWCWYK+ A + + GH VTA+DL ASGIN K+ + F Y PLM
Sbjct: 12 KKHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 69 EVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVP 128
E +ASLPA EK+ILVGH+LGG+ ++ A + FP KISVAVF++ MP ++
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPN------IDATT 125
Query: 129 YSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPG 188
K G LD + + +++ G +FL +Y L P EDL LA LVRP
Sbjct: 126 VCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPL 185
Query: 189 SMFI-DNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
+++ +++SKE S + YGSVKRV++V E+ L K+F MI+ P +EV EI+G DH
Sbjct: 186 YLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDH 245
Query: 248 MAMLSDPQKLCDCLSQISLKY 268
+ M+S PQ+L L I+ KY
Sbjct: 246 VTMMSKPQQLFTTLLSIANKY 266
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 158/261 (60%), Gaps = 7/261 (2%)
Query: 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLM 68
+KHFVLVH HGAWCWYK+ A + + GH VTA+DL ASGIN K+ + F Y PLM
Sbjct: 12 KKHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 69 EVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVP 128
E +ASLPA EK+ILVGH+LGG+ ++ A + FP KISVAVF++ MP ++
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPN------IDATT 125
Query: 129 YSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPG 188
K G LD + + +++ G +FL +Y L P EDL LA LVRP
Sbjct: 126 VCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPL 185
Query: 189 SMFI-DNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247
+++ +++SKE S + YGSVKRV++V E+ L K+F MI+ P +EV EI+G D
Sbjct: 186 YLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDA 245
Query: 248 MAMLSDPQKLCDCLSQISLKY 268
+ M+S PQ+L L I+ KY
Sbjct: 246 VTMMSKPQQLFTTLLSIANKY 266
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 166/264 (62%), Gaps = 7/264 (2%)
Query: 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEP 66
M HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEP
Sbjct: 1 MVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEP 60
Query: 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQ 126
L+ L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +
Sbjct: 61 LLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTV-- 118
Query: 127 VPYSEKMGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLV 185
EK+ + W DT+ F+ + + + +M G L ++ C + ELAKM++
Sbjct: 119 ----EKLLESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVM 174
Query: 186 RPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGG 245
RPGS+F + L++ KF+++GYGS+ +VY+ ++D FQ W I NYP ++V +++GG
Sbjct: 175 RPGSLFQNVLAQRPKFTEKGYGSIPKVYIWTDQDKIFLPDFQRWQIANYPPDKVYQVQGG 234
Query: 246 DHMAMLSDPQKLCDCLSQISLKYA 269
DH L+ +++ L +++ YA
Sbjct: 235 DHKLQLTKTEEVAHILQEVADAYA 258
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 166/264 (62%), Gaps = 7/264 (2%)
Query: 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEP 66
M HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEP
Sbjct: 1 MVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEP 60
Query: 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQ 126
L+ L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +
Sbjct: 61 LLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTV-- 118
Query: 127 VPYSEKMGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLV 185
EK+ + W DT+ F+ + + + +M G L ++ C + ELAKM++
Sbjct: 119 ----EKLLESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVM 174
Query: 186 RPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGG 245
RPGS+F + L++ KF+++GYGS+K+VY+ ++D FQ W I NY ++V +++GG
Sbjct: 175 RPGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGG 234
Query: 246 DHMAMLSDPQKLCDCLSQISLKYA 269
DH L+ +++ L +++ YA
Sbjct: 235 DHKLQLTKTEEVAHILQEVADAYA 258
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 165/264 (62%), Gaps = 7/264 (2%)
Query: 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEP 66
M HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEP
Sbjct: 5 MVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEP 64
Query: 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQ 126
L+ L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +
Sbjct: 65 LLTFLEKLPQGEKVIIVGESXAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTV-- 122
Query: 127 VPYSEKMGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLV 185
EK+ + W DT+ F+ + + + +M G L ++ C + ELAKM++
Sbjct: 123 ----EKLLESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVM 178
Query: 186 RPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGG 245
R GS+F + L++ KF+++GYGS+K+VY+ ++D FQ W I NY ++V +++GG
Sbjct: 179 RKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGG 238
Query: 246 DHMAMLSDPQKLCDCLSQISLKYA 269
DH L+ +++ L +++ YA
Sbjct: 239 DHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 213 bits (542), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 165/264 (62%), Gaps = 7/264 (2%)
Query: 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEP 66
M HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEP
Sbjct: 5 MVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEP 64
Query: 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQ 126
L+ L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +
Sbjct: 65 LLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTV-- 122
Query: 127 VPYSEKMGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLV 185
EK+ + W DT+ F+ + + + +M G L ++ C + ELAKM++
Sbjct: 123 ----EKLLESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVM 178
Query: 186 RPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGG 245
R GS+F + L++ KF+++GYGS+K+VY+ ++D FQ W I NY ++V +++GG
Sbjct: 179 RKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGG 238
Query: 246 DHMAMLSDPQKLCDCLSQISLKYA 269
DH L+ +++ L +++ YA
Sbjct: 239 DHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 165/264 (62%), Gaps = 7/264 (2%)
Query: 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEP 66
M HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEP
Sbjct: 5 MVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEP 64
Query: 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQ 126
L+ L LP EKVI+VG + G+ +A+AAD++ KI+ VF + +PDT H PS+ +
Sbjct: 65 LLTFLEKLPQGEKVIIVGEACAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTV-- 122
Query: 127 VPYSEKMGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLV 185
EK+ + W DT+ F+ + + + +M G L ++ C + ELAKM++
Sbjct: 123 ----EKLLESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVM 178
Query: 186 RPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGG 245
R GS+F + L++ KF+++GYGS+K+VY+ ++D FQ W I NY ++V +++GG
Sbjct: 179 RKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGG 238
Query: 246 DHMAMLSDPQKLCDCLSQISLKYA 269
DH L+ +++ L +++ YA
Sbjct: 239 DHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 164/263 (62%), Gaps = 5/263 (1%)
Query: 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEP 66
M HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEP
Sbjct: 5 MVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEP 64
Query: 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQ 126
L+ L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +E+
Sbjct: 65 LLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEK 124
Query: 127 VPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVR 186
+ S ++ + F+ + + + +M G L ++ C + ELAKM++R
Sbjct: 125 LLESFPDARDTE-----YFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMR 179
Query: 187 PGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGD 246
GS+F + L++ KF+++GYGS+K+VY+ ++D FQ W I NY ++V +++GGD
Sbjct: 180 KGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGD 239
Query: 247 HMAMLSDPQKLCDCLSQISLKYA 269
H L+ +++ L +++ YA
Sbjct: 240 HKLQLTKTEEVAHILQEVADAYA 262
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 6 GMEEKHFVL-VHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYS 64
G E VL +HG+ W ++ L A G+RV A DL G +E V ++ + +
Sbjct: 22 GSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHG-RSSHLEMVTSYSSLT 80
Query: 65 --EPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMP 114
+ V+ LP ++ ++LVGHS+G + A P KI + V +P
Sbjct: 81 FLAQIDRVIQELP-DQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLP 131
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMK-----RIEDVHTFHAYSEPL 67
+ +HG ++ W + +VA G+R A DL G + K R++D H AY +
Sbjct: 33 LFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYRLQD-HV--AYXDGF 89
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSF 122
++ L + +LV H G V A P +++ F A +P PS+
Sbjct: 90 IDALGL----DDXVLVIHDWGSVIGXRHARLNPDRVAAVAFXEALVPPALPXPSY 140
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 37 HRVTAVDLAASGINMKRIEDVH---TFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLA 93
HRV D SG + R D++ T Y++ +++V +L +E V VGHS+G +
Sbjct: 47 HRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETV-FVGHSVGALIGM 105
Query: 94 LAADKFPHKISVAVFV---TAFMPDTT-HRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCD 149
LA+ + P S V V ++ D + F EQ+ +M +++ T F+
Sbjct: 106 LASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATV 165
Query: 150 ASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSV 209
+ P + +E L + P + AK + F D+ SK + V
Sbjct: 166 LNQPDRPEI---KEELESRFCSTDPVIARQFAK-----AAFFSDHREDLSKVT------V 211
Query: 210 KRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQK 256
+ L C +DI P +M Q+ P + + +++ H +S P +
Sbjct: 212 PSLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCPHMSHPDE 258
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + L+A G+RV D G + K + + + ++ L VL
Sbjct: 27 VLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSK-VNTGYDYDTFAADLHTVLE 85
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKFPH-KISVAVFVTAFMPDTTHR 119
+L + V+LVG S+G LA ++ H +++ F+ + P R
Sbjct: 86 TLDLRD-VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQR 132
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARL--VAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
++ VL+HG GA W + +A V AVD G + KR E F+ Y+
Sbjct: 55 NDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQ-FNRYAA 113
Query: 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVF-------VTAFMPDTT 117
++ L +V LVG+SLGG T A +P + V + F PD T
Sbjct: 114 MALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPT 172
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 14 LVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLA 72
L HG + W L G RV A+D+ G + E + + + ++ L
Sbjct: 261 LCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLD 320
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKFPHKI-SVAVFVTAFM-PDTTHRPSFVLEQVP 128
L + + +GH GV + A +P ++ +VA T FM PD P V+ +P
Sbjct: 321 KL-GIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDPDVSPMKVIRSIP 377
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVL 71
VLVHG+ G+ + AR + H + VD+ G++ + E V + A ++ L++ L
Sbjct: 19 IVLVHGL-FGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPR--EPVMNYPAMAQDLVDTL 75
Query: 72 ASLPAEEKVILVGHSLGGVTL----ALAADKFPHKISVAV 107
+L + K +GHS+GG + ALA D+ +++ +
Sbjct: 76 DALQID-KATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARL--VAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
++ VL+HG GA W + +A V AVD G + KR E F+ Y+
Sbjct: 35 NDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQ-FNRYAA 93
Query: 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVF-------VTAFMPDTT 117
++ L +V LVG++LGG T A +P + V + F PD T
Sbjct: 94 MALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPT 152
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 14 LVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLA 72
L HG + W L G+RV A+D+ G + E + + + ++ L
Sbjct: 44 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLD 103
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKFPHKI-SVAVFVTAFMP 114
L + + +GH GG+ + A +P ++ +VA T F+P
Sbjct: 104 KL-GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIP 145
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 14 LVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLA 72
L HG + W L G+RV A+D+ G + E + + + ++ L
Sbjct: 59 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLD 118
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKFPHKI-SVAVFVTAFMP 114
L + + +GH GG+ + A +P ++ +VA T F+P
Sbjct: 119 KL-GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIP 160
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLME 69
+ +L HG N A W + L G+RV AVD + K ++F +
Sbjct: 47 RTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHA 106
Query: 70 VLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT 110
+L L + ++GHS GG A +P ++ V V
Sbjct: 107 LLERL-GVARASVIGHSXGGXLATRYALLYPRQVERLVLVN 146
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 14 LVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLA 72
L HG + W L G+RV A+D+ G + E + + + ++ L
Sbjct: 263 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLD 322
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKFPHKI-SVAVFVTAFMP 114
L + + +GH GG+ + A +P ++ +VA T F+P
Sbjct: 323 KL-GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIP 364
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + A L+ G+RV D G + + + + ++ L VL
Sbjct: 28 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-YDYDTFAADLNTVLE 86
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKF-PHKISVAVFVTAFMP 114
+L ++ V LVG S+G +A + +I+ F+ + P
Sbjct: 87 TLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAAVAFLASLEP 128
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMK-RIEDVHTFHAYSEPLMEVL 71
VL+HG + W L G+RV A+D G + K R++ + ++ VL
Sbjct: 37 VLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVL 96
Query: 72 ASLPAEEKVILVGHSLG 88
S AE+ + VGH G
Sbjct: 97 DSYGAEQAFV-VGHDWG 112
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMK-RIEDVHTFHAYSEPLMEVL 71
VL+HG + W L G+RV A+D G + K R++ + ++ VL
Sbjct: 31 VLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVL 90
Query: 72 ASLPAEEKVILVGHSLG 88
S AE+ + VGH G
Sbjct: 91 DSYGAEQAFV-VGHDWG 106
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASG-INMKRIEDVHTFHAY 63
G E +L+HG H A W A +++ R+ A+DL + G +K ED+ +
Sbjct: 35 GSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDL-SAETM 93
Query: 64 SEPLMEVLASLPAE--EKVILVGHSLGG 89
++ + V+ ++ + ++L+GHS+GG
Sbjct: 94 AKDVGNVVEAMYGDLPPPIMLIGHSMGG 121
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVL 71
VLVHG+ G+ + AR + H + VD+ G++ + E V + A ++ L++ L
Sbjct: 19 IVLVHGL-FGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPR--EPVMNYPAMAQDLVDTL 75
Query: 72 ASLPAEEKVILVGHSLGGVTL----ALAADKFPHKISVAV 107
+ + K +GHS+GG + ALA D+ +++ +
Sbjct: 76 DAQQID-KATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 16 HGVNHGAWCWYKLKARLVAGGHRVT--AVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS 73
HG+ + + L RL R T AVD G++ K E + + Y++ + ++ +
Sbjct: 75 HGITSNSAVFEPLXIRL---SDRFTTIAVDQRGHGLSDKP-ETGYEANDYADDIAGLIRT 130
Query: 74 LPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMP 114
L A ILVGHSLG AA K+P + V + F P
Sbjct: 131 L-ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAID-FTP 169
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 6 GMEEKHFVLVHGVNHGAWCWYKLKAR---LVAGGHRVTAVDLAASGINMKRIEDVHTFHA 62
G ++ VL+HG GA W LV G+RV +D G + + V +
Sbjct: 33 GQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWG----KSDSVVNSGS 88
Query: 63 YSEPLMEVLASLPAE---EKVILVGHSLGGVTLALAADKFPHKISVAVFV 109
S+ +L S+ + K+ L+G+S+GG + K+P ++ V +
Sbjct: 89 RSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLM 138
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + A L+ G+RV D G + + + + ++ L VL
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-YDYDTFAADLNTVLE 85
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKF-PHKISVAVFVTAFMP 114
+L ++ V LVG S+G +A + +I+ F+ + P
Sbjct: 86 TLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAKVAFLASLEP 127
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASG-INMKRIEDVHTFHAY 63
G E +L+HG H A W A +++ R+ A+DL + G +K ED+ +
Sbjct: 39 GSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDL-SAETM 97
Query: 64 SEPLMEVLASLPAE--EKVILVGHSLGG 89
++ + V+ ++ + ++L+GH++GG
Sbjct: 98 AKDVGNVVEAMYGDLPPPIMLIGHAMGG 125
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + A L+ G+RV D G + + + + ++ L VL
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-YDYDTFAADLNTVLE 85
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKF-PHKISVAVFVTAFMP 114
+L ++ V LVG S+G +A + +I+ F+ + P
Sbjct: 86 TLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAKVAFLASLEP 127
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 3 EVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVH---T 59
VVG E+ VL HG W ++ + +RV DL +G D T
Sbjct: 14 RVVGSGERVLVLAHGFGTDQSAWNRILPFFLR-DYRVVLYDLVCAGSVNPDFFDFRRYTT 72
Query: 60 FHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA---FMPDT 116
Y + L+ +L +L + VGHS+ + LA+ + P S + + A F+ D
Sbjct: 73 LDPYVDDLLHILDAL-GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDE 131
Query: 117 THRPSF 122
+ F
Sbjct: 132 DYHGGF 137
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + A L+ G+RV D G + + + + ++ L VL
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-YDYDTFAADLNTVLE 85
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKF-PHKISVAVFVTAFMP 114
+L ++ V LVG S G +A + +I+ F+ + P
Sbjct: 86 TLDLQDAV-LVGFSTGTGEVARYVSSYGTARIAKVAFLASLEP 127
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
G + +HG A W + +V G AVDL G + R + ++ SE
Sbjct: 78 GGSAPRVIFLHGGGQNAHTWDTV---IVGLGEPALAVDLPGHGHSAWREDGNYSPQLNSE 134
Query: 66 PLMEVLASL-PAEEKVILVGHSLGGVTLALAADKFPHKISVAVFV 109
L VL L P E V VG SLGG+T A P + V V
Sbjct: 135 TLAPVLRELAPGAEFV--VGMSLGGLTAIRLAAMAPDLVGELVLV 177
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio
Cholerae, Pfam Abhydrolase
Length = 264
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLME-VL 71
VLVHG+ W + + L +DL G N +R D F E + + V
Sbjct: 20 VLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTNPERHCD--NFAEAVEXIEQTVQ 77
Query: 72 ASLPAEEKVILVGHSLGG 89
A + +E VILVG+SLGG
Sbjct: 78 AHVTSEVPVILVGYSLGG 95
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 3 EVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVH---T 59
VVG E+ VL HG W ++ + +RV DL +G D T
Sbjct: 14 RVVGSGERVLVLAHGFGTDQSAWNRILPFFLR-DYRVVLYDLVCAGSVNPDFFDFRRYTT 72
Query: 60 FHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA---FMPDT 116
Y + L+ +L +L + VGH++ + LA+ + P S + + A F+ D
Sbjct: 73 LDPYVDDLLHILDAL-GIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASPRFLNDE 131
Query: 117 THRPSF 122
+ F
Sbjct: 132 DYHGGF 137
>pdb|2QS9|A Chain A, Crystal Structure Of The Human Retinoblastoma-Binding
Protein 9 (Rbbp-9). Nesg Target Hr2978
pdb|2QS9|B Chain B, Crystal Structure Of The Human Retinoblastoma-Binding
Protein 9 (Rbbp-9). Nesg Target Hr2978
Length = 194
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 74 LPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF---MPDTTHRPSFVLEQ---- 126
L +EK I++GHS G + A+ H++ V V+A+ + D R S +
Sbjct: 63 LHCDEKTIIIGHSSGAIAAXRYAET--HRVYAIVLVSAYTSDLGDENERASGYFTRPWQW 120
Query: 127 ------VPYSEKMGKEDDSWL 141
PY + G DD +L
Sbjct: 121 EKIKANCPYIVQFGSTDDPFL 141
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 8 EEKHFVLVHGVNHG--AWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
E + +L+HG G A+ ++L ++ +RV A D+ G + ++ ++ +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMP--DTTHRPSFV 123
++ ++ +L E K +VG+S GG A ++ ++ V + A D T + V
Sbjct: 84 HIIGIMDALEIE-KAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTEGLNAV 142
Query: 124 LEQVPYSEKM 133
P E M
Sbjct: 143 WGYTPSIENM 152
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 19/224 (8%)
Query: 37 HRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAA 96
++V D +G N + + ++ + L + L + E + VGH+LG + A
Sbjct: 42 YQVVCYDQRGTGNNPDTLAEDYSIAQXAAELHQALVAAGIEHYAV-VGHALGALVGXQLA 100
Query: 97 DKFPHKISVAVFVTAFMPDTTH-RPSF-VLEQVPYSEKMGKEDDSWLDTQFSQCDASNPS 154
+P ++V + V ++ H R F V E++ YS +W++ Q
Sbjct: 101 LDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGA----QAWVEAQ---------- 146
Query: 155 HISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYL 214
L+ ++ + +L + L LA + + N K + FS V +
Sbjct: 147 -PLFLYPADWXAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQI 205
Query: 215 VC-EEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQKL 257
+C +D+ +P + P ++ G H ++DP+
Sbjct: 206 ICASDDLLVPTACSSELHAALPDSQKXVXPYGGHACNVTDPETF 249
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 67 LMEVLASL-PAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLE 125
L E++ S+ P +K + GHS+GG A + P + V+AF P + +
Sbjct: 129 LPELIESMFPVSDKRAIAGHSMGGHGALTIALRNPERYQS---VSAFSP-INNPVNCPWG 184
Query: 126 QVPYSEKMGKEDDSW 140
Q ++ +GK+ D+W
Sbjct: 185 QKAFTAYLGKDTDTW 199
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 27 KLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHA------YSEPLMEVLASLPAEEK- 79
+LKA LV HR L + K ++ + ++E + + ++P E
Sbjct: 67 ELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQ 126
Query: 80 -VILVGHSLGGVTLALAADKFPHKISVAVFVTA 111
VI +G S GG+ A K+PH + A+ +A
Sbjct: 127 PVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 2 EEVVGMEEKHF--VLVHGVNHGAWCWYKLKA--RLVAGGHRVTAVDLAASG 48
E + G + F +L+HG+ + W L RL G+R A+DL G
Sbjct: 23 EALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLG 73
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 51 MKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT 110
+ IED + ++ + + P + LVGHS GGV ++ A +P I V +
Sbjct: 99 LNEIEDANA-------ILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLA 151
Query: 111 --------AFMPDT---THRPSFVLEQVPYSE 131
A +T T+ P + +++P+ +
Sbjct: 152 PAATLKGDALEGNTQGVTYNPDHIPDRLPFKD 183
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 26 YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVG- 84
Y + R V G R+TA +L GI++ I D H E ++ A + +++ G
Sbjct: 211 YACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEK--QISAVIVGADRIAKNGD 268
Query: 85 --HSLGGVTLALAADKFPHKISVAVFVTAF 112
+ +G LA+ A+ F VA ++ F
Sbjct: 269 TANKIGTYGLAILANAFDIPFFVAAPLSTF 298
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA----SGINMKRIEDVHTFHAYSEPLM 68
+ +HG + W L G+R A DL +G + H + +
Sbjct: 35 LFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVA 94
Query: 69 EVLASLPAEEKVILVGHSLGGV 90
+ A P EEKV +V H G +
Sbjct: 95 LLEAIAPNEEKVFVVAHDWGAL 116
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA----SGINMKRIEDVHTFHAYSEPLM 68
+ +HG + W L G+R A DL +G + H + +
Sbjct: 35 LFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVA 94
Query: 69 EVLASLPAEEKVILVGHSLGGV 90
+ A P EEKV +V H G +
Sbjct: 95 LLEAIAPNEEKVFVVAHDWGAL 116
>pdb|3I6Y|A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
pdb|3I6Y|B Chain B, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
Length = 280
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 70 VLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPY 129
+ + P +K + GHS GG A + P + V+AF P + + Q +
Sbjct: 133 IESXFPVSDKRAIAGHSXGGHGALTIALRNPERYQS---VSAFSP-INNPVNCPWGQKAF 188
Query: 130 SEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELA 181
+ +GK+ D+W + S + ++ L + + + PE LE A
Sbjct: 189 TAYLGKDTDTWREYDASLLXRAAKQYVPALVDQGEADNFLAEQLKPEVLEAA 240
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 114 PDTTHRPSFVLEQV-PYSEKMGKEDDSWLDTQFSQCDASNPSHISML 159
PDT+H P+ V Q P +E+ +++D L + D P H++++
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 114 PDTTHRPSFVLEQV-PYSEKMGKEDDSWLDTQFSQCDASNPSHISML 159
PDT+H P+ V Q P +E+ +++D L + D P H++++
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167
>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|B Chain B, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|C Chain C, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|D Chain D, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
Length = 250
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLME 69
+V G + G + R +A G RV A+DL+A ++ H +HAY++ ++
Sbjct: 2 SRVAIVTGASSG--NGLAIATRFLARGDRVAALDLSAE--TLEETARTH-WHAYADKVLR 56
Query: 70 VLASLPAEEKV 80
V A + E V
Sbjct: 57 VRADVADEGDV 67
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 64 SEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT--------AFMPD 115
+ ++ + + P + LVGH+ GGV ++ A +P I V + A +
Sbjct: 105 ANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGN 164
Query: 116 T---THRPSFVLEQVPYSE 131
T T+ P + +++P+ +
Sbjct: 165 TQGVTYNPDHIPDRLPFKD 183
>pdb|2QBY|B Chain B, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 384
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 189 SMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPK 224
S +I N +E K DE Y VK+ Y+ C E G P+
Sbjct: 62 SKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 64 SEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT--------AFMPD 115
+ ++ + + P + LVGH+ GGV ++ A +P I V + A +
Sbjct: 105 ANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGN 164
Query: 116 T---THRPSFVLEQVPYSE 131
T T+ P + +++P+ +
Sbjct: 165 TQGVTYNPDHIPDRLPFKD 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,065,363
Number of Sequences: 62578
Number of extensions: 314428
Number of successful extensions: 995
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 78
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)