Query 024316
Match_columns 269
No_of_seqs 104 out of 1226
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02965 Probable pheophorbida 100.0 1.6E-40 3.4E-45 279.4 25.7 251 7-267 1-252 (255)
2 PLN02211 methyl indole-3-aceta 100.0 1.6E-37 3.5E-42 263.5 27.4 251 9-267 18-269 (273)
3 PLN02824 hydrolase, alpha/beta 100.0 2.3E-35 4.9E-40 253.0 20.3 250 5-267 25-293 (294)
4 PRK00870 haloalkane dehalogena 100.0 1.9E-34 4.2E-39 248.2 21.1 246 9-267 46-300 (302)
5 TIGR02240 PHA_depoly_arom poly 100.0 1.7E-34 3.6E-39 245.5 19.6 238 9-268 25-266 (276)
6 PLN02679 hydrolase, alpha/beta 100.0 4.1E-34 8.9E-39 251.8 19.6 249 9-267 88-356 (360)
7 KOG4178 Soluble epoxide hydrol 100.0 2.5E-33 5.5E-38 233.9 22.2 249 7-268 42-320 (322)
8 PRK03204 haloalkane dehalogena 100.0 9.5E-34 2.1E-38 242.1 20.0 249 9-265 34-285 (286)
9 PRK03592 haloalkane dehalogena 100.0 1.4E-33 3E-38 242.0 20.2 254 8-267 26-288 (295)
10 PRK10349 carboxylesterase BioH 100.0 3.7E-33 8E-38 234.6 18.6 237 5-266 9-254 (256)
11 PRK10673 acyl-CoA esterase; Pr 100.0 5.5E-32 1.2E-36 226.9 22.1 234 8-267 15-254 (255)
12 TIGR03343 biphenyl_bphD 2-hydr 100.0 4.5E-32 9.8E-37 230.7 21.2 246 8-266 29-281 (282)
13 PLN03084 alpha/beta hydrolase 100.0 9.4E-32 2E-36 236.9 20.4 248 8-267 126-383 (383)
14 TIGR03056 bchO_mg_che_rel puta 100.0 2.2E-31 4.8E-36 225.4 20.9 243 9-266 28-278 (278)
15 PLN03087 BODYGUARD 1 domain co 100.0 2.4E-31 5.3E-36 238.9 20.8 253 9-266 201-477 (481)
16 PLN02578 hydrolase 100.0 2.5E-31 5.5E-36 233.7 20.2 246 8-266 85-353 (354)
17 TIGR03611 RutD pyrimidine util 100.0 4.1E-32 9E-37 226.5 14.3 233 8-267 12-257 (257)
18 PRK11126 2-succinyl-6-hydroxy- 100.0 3.6E-31 7.8E-36 220.3 18.9 233 9-267 2-241 (242)
19 PRK06489 hypothetical protein; 100.0 6.3E-31 1.4E-35 231.7 19.3 248 9-267 69-356 (360)
20 PLN02385 hydrolase; alpha/beta 100.0 4.6E-31 1E-35 231.7 17.4 240 9-267 87-344 (349)
21 KOG1454 Predicted hydrolase/ac 100.0 8.6E-31 1.9E-35 226.1 16.5 245 8-267 57-323 (326)
22 TIGR01738 bioH putative pimelo 100.0 2E-30 4.4E-35 214.2 17.0 234 9-265 3-245 (245)
23 PRK08775 homoserine O-acetyltr 100.0 1.5E-30 3.2E-35 228.0 16.9 249 5-267 53-338 (343)
24 PHA02857 monoglyceride lipase; 100.0 8.6E-30 1.9E-34 216.4 19.3 234 11-267 27-272 (276)
25 TIGR02427 protocat_pcaD 3-oxoa 100.0 8.7E-30 1.9E-34 210.9 17.6 237 9-266 13-251 (251)
26 PF12697 Abhydrolase_6: Alpha/ 100.0 3.8E-31 8.1E-36 215.6 9.0 227 12-260 1-228 (228)
27 PLN02298 hydrolase, alpha/beta 100.0 2.4E-29 5.2E-34 219.2 18.1 240 9-267 59-316 (330)
28 PRK07581 hypothetical protein; 100.0 1.1E-29 2.4E-34 222.1 15.7 252 10-268 42-336 (339)
29 TIGR03695 menH_SHCHC 2-succiny 100.0 9.6E-29 2.1E-33 204.2 19.8 243 9-266 1-251 (251)
30 PRK10749 lysophospholipase L2; 100.0 5.2E-29 1.1E-33 217.0 18.5 243 8-268 53-329 (330)
31 TIGR01250 pro_imino_pep_2 prol 100.0 3.6E-29 7.8E-34 211.8 16.0 246 9-266 25-288 (288)
32 KOG4409 Predicted hydrolase/ac 100.0 9.2E-29 2E-33 207.3 17.8 247 7-268 88-364 (365)
33 PLN02894 hydrolase, alpha/beta 100.0 2.8E-27 6E-32 210.9 23.2 103 8-112 104-210 (402)
34 TIGR01392 homoserO_Ac_trn homo 100.0 3.3E-28 7.1E-33 213.7 15.9 252 9-266 31-351 (351)
35 PRK00175 metX homoserine O-ace 100.0 9.7E-28 2.1E-32 212.7 18.5 253 9-267 48-373 (379)
36 PRK14875 acetoin dehydrogenase 100.0 3.2E-27 7E-32 208.6 19.4 237 8-267 130-370 (371)
37 PLN02652 hydrolase; alpha/beta 99.9 1E-26 2.2E-31 206.1 18.7 238 9-267 136-386 (395)
38 COG2267 PldB Lysophospholipase 99.9 3.1E-26 6.7E-31 195.9 18.9 239 10-267 35-293 (298)
39 PLN02980 2-oxoglutarate decarb 99.9 1.8E-26 3.9E-31 234.0 17.5 240 9-267 1371-1638(1655)
40 PRK05855 short chain dehydroge 99.9 1.6E-26 3.5E-31 215.4 15.0 253 8-267 24-291 (582)
41 TIGR01249 pro_imino_pep_1 prol 99.9 8.5E-26 1.8E-30 194.9 17.0 103 9-113 27-130 (306)
42 PLN02511 hydrolase 99.9 4.2E-25 9E-30 196.1 11.3 244 9-267 100-364 (388)
43 TIGR01607 PST-A Plasmodium sub 99.9 4E-24 8.6E-29 186.2 15.9 237 9-266 21-331 (332)
44 KOG2382 Predicted alpha/beta h 99.9 1.3E-24 2.8E-29 181.9 11.7 237 8-267 51-312 (315)
45 KOG1455 Lysophospholipase [Lip 99.9 1.7E-23 3.7E-28 172.6 15.7 236 10-266 55-310 (313)
46 COG1647 Esterase/lipase [Gener 99.9 7.4E-23 1.6E-27 161.3 14.6 222 9-267 15-243 (243)
47 PRK05077 frsA fermentation/res 99.9 1.4E-21 3.1E-26 174.5 22.6 213 10-267 194-411 (414)
48 PRK11071 esterase YqiA; Provis 99.9 2.3E-21 4.9E-26 155.7 18.3 184 10-266 2-189 (190)
49 TIGR01838 PHA_synth_I poly(R)- 99.9 8.7E-22 1.9E-26 178.9 17.2 237 9-255 188-462 (532)
50 TIGR03100 hydr1_PEP hydrolase, 99.9 1E-21 2.2E-26 166.8 16.7 230 9-266 26-273 (274)
51 PRK06765 homoserine O-acetyltr 99.9 1.1E-21 2.4E-26 173.5 14.8 255 9-267 56-387 (389)
52 PRK10985 putative hydrolase; P 99.9 1.4E-21 3E-26 170.0 13.2 231 9-253 58-300 (324)
53 KOG2564 Predicted acetyltransf 99.9 1.9E-22 4E-27 163.9 5.7 104 8-112 73-181 (343)
54 COG0596 MhpC Predicted hydrola 99.9 6.3E-20 1.4E-24 151.4 19.6 250 9-266 21-280 (282)
55 TIGR01836 PHA_synth_III_C poly 99.8 2.5E-20 5.5E-25 163.7 14.8 100 9-113 62-171 (350)
56 PF00561 Abhydrolase_1: alpha/ 99.8 3.3E-22 7.2E-27 164.1 2.4 214 37-262 1-229 (230)
57 PRK07868 acyl-CoA synthetase; 99.8 5.7E-20 1.2E-24 180.8 17.3 255 8-267 66-360 (994)
58 PRK13604 luxD acyl transferase 99.8 2.7E-19 5.7E-24 151.4 18.7 205 9-254 37-249 (307)
59 PLN02872 triacylglycerol lipas 99.8 1.5E-19 3.2E-24 160.0 16.5 258 9-268 74-389 (395)
60 PRK10566 esterase; Provisional 99.8 8.6E-19 1.9E-23 146.6 18.4 204 9-268 27-248 (249)
61 KOG2984 Predicted hydrolase [G 99.8 3.1E-20 6.7E-25 144.3 8.4 234 5-267 38-275 (277)
62 TIGR03101 hydr2_PEP hydrolase, 99.8 3.5E-19 7.6E-24 149.4 12.5 104 9-114 25-135 (266)
63 PF12695 Abhydrolase_5: Alpha/ 99.8 1E-17 2.3E-22 128.1 14.9 144 11-248 1-145 (145)
64 TIGR03230 lipo_lipase lipoprot 99.7 6.9E-17 1.5E-21 143.4 11.4 109 7-116 39-157 (442)
65 KOG4667 Predicted esterase [Li 99.7 2.2E-15 4.8E-20 118.5 13.4 217 9-264 33-254 (269)
66 cd00707 Pancreat_lipase_like P 99.7 3.8E-16 8.3E-21 132.4 9.9 109 6-115 33-149 (275)
67 PRK11460 putative hydrolase; P 99.7 8.5E-15 1.9E-19 121.3 16.5 175 7-266 14-210 (232)
68 TIGR02821 fghA_ester_D S-formy 99.6 3E-14 6.6E-19 121.1 18.6 105 8-112 41-172 (275)
69 PLN02442 S-formylglutathione h 99.6 1.6E-13 3.4E-18 117.1 19.5 105 7-112 45-177 (283)
70 PF00326 Peptidase_S9: Prolyl 99.6 2.6E-14 5.6E-19 116.8 14.0 195 24-268 2-209 (213)
71 COG3208 GrsT Predicted thioest 99.6 6.3E-14 1.4E-18 113.3 15.5 222 9-266 7-234 (244)
72 PF06342 DUF1057: Alpha/beta h 99.6 9.7E-14 2.1E-18 114.4 16.2 101 10-112 36-136 (297)
73 PLN00021 chlorophyllase 99.6 2.7E-14 5.8E-19 123.0 11.1 103 8-111 51-164 (313)
74 KOG1552 Predicted alpha/beta h 99.6 2.2E-13 4.7E-18 110.9 15.4 188 9-266 60-250 (258)
75 PF06821 Ser_hydrolase: Serine 99.5 3E-13 6.4E-18 106.4 13.4 154 12-252 1-157 (171)
76 TIGR03502 lipase_Pla1_cef extr 99.5 6.2E-14 1.3E-18 131.8 10.7 89 10-98 450-575 (792)
77 TIGR01839 PHA_synth_II poly(R) 99.5 4.7E-13 1E-17 121.3 15.7 102 9-114 215-329 (560)
78 PF12146 Hydrolase_4: Putative 99.5 1.3E-13 2.8E-18 94.2 6.5 64 9-72 16-79 (79)
79 PRK10252 entF enterobactin syn 99.5 1.5E-12 3.2E-17 132.3 16.9 102 8-113 1067-1171(1296)
80 COG1506 DAP2 Dipeptidyl aminop 99.4 3.9E-12 8.5E-17 119.6 17.0 206 10-268 395-616 (620)
81 TIGR01840 esterase_phb esteras 99.4 1.7E-12 3.7E-17 106.1 11.3 102 9-113 13-130 (212)
82 PF02230 Abhydrolase_2: Phosph 99.4 2.5E-11 5.4E-16 99.5 16.1 176 8-267 13-214 (216)
83 PF00975 Thioesterase: Thioest 99.4 6.3E-12 1.4E-16 103.7 11.4 103 10-115 1-106 (229)
84 PF10230 DUF2305: Uncharacteri 99.4 1.5E-11 3.1E-16 103.9 12.9 108 10-117 3-126 (266)
85 PF01738 DLH: Dienelactone hyd 99.4 3.9E-11 8.4E-16 98.4 15.2 165 8-255 13-196 (218)
86 COG2021 MET2 Homoserine acetyl 99.3 1.9E-11 4.1E-16 104.5 13.1 249 10-266 52-366 (368)
87 TIGR00976 /NonD putative hydro 99.3 3.1E-12 6.6E-17 118.9 8.6 102 9-112 22-131 (550)
88 PRK10162 acetyl esterase; Prov 99.3 3.7E-10 8E-15 98.0 20.6 103 9-112 81-194 (318)
89 PF05728 UPF0227: Uncharacteri 99.3 2.1E-10 4.5E-15 91.4 17.3 86 12-113 2-91 (187)
90 PF07819 PGAP1: PGAP1-like pro 99.3 1.4E-11 3E-16 101.3 10.8 102 8-113 3-123 (225)
91 COG0429 Predicted hydrolase of 99.3 1.7E-11 3.6E-16 103.3 11.2 103 9-111 75-183 (345)
92 KOG4391 Predicted alpha/beta h 99.3 2.2E-11 4.8E-16 96.3 11.0 200 8-267 77-281 (300)
93 KOG2931 Differentiation-relate 99.3 3E-10 6.5E-15 93.9 17.9 242 9-266 46-304 (326)
94 KOG1838 Alpha/beta hydrolase [ 99.3 9.3E-11 2E-15 102.1 15.7 102 9-110 125-232 (409)
95 PF03096 Ndr: Ndr family; Int 99.2 5E-10 1.1E-14 93.5 14.0 230 9-267 23-278 (283)
96 PLN02733 phosphatidylcholine-s 99.2 7.7E-11 1.7E-15 105.5 8.3 88 20-112 105-200 (440)
97 PF01674 Lipase_2: Lipase (cla 99.2 5.6E-11 1.2E-15 96.7 6.4 96 10-109 2-105 (219)
98 TIGR01849 PHB_depoly_PhaZ poly 99.1 1.6E-09 3.5E-14 95.7 15.1 101 10-114 103-209 (406)
99 PF06500 DUF1100: Alpha/beta h 99.1 6.9E-10 1.5E-14 97.3 12.6 102 10-112 190-295 (411)
100 COG3319 Thioesterase domains o 99.1 9.5E-10 2.1E-14 91.5 10.7 101 10-114 1-104 (257)
101 COG4757 Predicted alpha/beta h 99.1 6.2E-09 1.4E-13 83.4 14.4 89 11-100 32-126 (281)
102 COG3545 Predicted esterase of 99.1 9.2E-09 2E-13 79.2 14.0 172 9-266 2-177 (181)
103 KOG2565 Predicted hydrolases o 99.0 7.3E-10 1.6E-14 94.3 7.9 103 6-109 149-260 (469)
104 PF12740 Chlorophyllase2: Chlo 99.0 1.6E-09 3.5E-14 89.7 8.9 102 10-112 18-130 (259)
105 PF06028 DUF915: Alpha/beta hy 99.0 4.9E-08 1.1E-12 81.4 17.8 105 9-113 11-143 (255)
106 COG0412 Dienelactone hydrolase 99.0 6.4E-08 1.4E-12 80.3 17.9 160 10-253 28-207 (236)
107 PRK10115 protease 2; Provision 99.0 3.1E-08 6.7E-13 94.2 16.9 104 9-112 445-558 (686)
108 PF05448 AXE1: Acetyl xylan es 99.0 2.4E-08 5.2E-13 86.4 14.5 206 9-266 83-318 (320)
109 COG0400 Predicted esterase [Ge 98.9 2E-08 4.4E-13 81.1 12.5 165 10-259 19-200 (207)
110 smart00824 PKS_TE Thioesterase 98.9 1.3E-08 2.7E-13 82.1 10.7 97 14-114 2-103 (212)
111 COG2945 Predicted hydrolase of 98.9 1.3E-07 2.7E-12 74.0 13.9 164 17-266 41-205 (210)
112 PF00151 Lipase: Lipase; Inte 98.9 2.8E-09 6.1E-14 92.4 5.5 109 8-117 70-191 (331)
113 COG3243 PhaC Poly(3-hydroxyalk 98.9 4.6E-08 9.9E-13 85.2 12.5 100 9-112 107-216 (445)
114 PF07224 Chlorophyllase: Chlor 98.8 9.2E-09 2E-13 84.0 7.4 103 9-112 46-156 (307)
115 PRK05371 x-prolyl-dipeptidyl a 98.8 4.6E-07 9.9E-12 87.0 18.7 83 28-112 271-372 (767)
116 COG1075 LipA Predicted acetylt 98.8 2.8E-08 6E-13 86.7 7.9 101 10-114 60-165 (336)
117 PF08538 DUF1749: Protein of u 98.7 2.2E-08 4.8E-13 84.5 6.2 96 9-112 33-147 (303)
118 PF07859 Abhydrolase_3: alpha/ 98.7 3.3E-07 7.1E-12 74.5 12.1 93 12-112 1-109 (211)
119 COG3571 Predicted hydrolase of 98.7 4.8E-07 1E-11 68.7 11.6 101 9-110 14-121 (213)
120 PF02273 Acyl_transf_2: Acyl t 98.7 6.5E-06 1.4E-10 66.9 18.7 208 9-256 30-244 (294)
121 PF05057 DUF676: Putative seri 98.7 6E-08 1.3E-12 79.5 7.3 86 9-96 4-96 (217)
122 PF05990 DUF900: Alpha/beta hy 98.7 1.6E-07 3.4E-12 77.8 9.7 105 8-112 17-136 (233)
123 PF09752 DUF2048: Uncharacteri 98.6 4.8E-06 1E-10 71.6 17.4 239 9-266 92-347 (348)
124 KOG4627 Kynurenine formamidase 98.6 1.7E-07 3.6E-12 74.0 7.8 181 9-253 67-252 (270)
125 COG3458 Acetyl esterase (deace 98.6 1.2E-06 2.7E-11 72.1 12.4 207 9-266 83-315 (321)
126 PF03959 FSH1: Serine hydrolas 98.6 2.2E-07 4.9E-12 75.9 8.3 164 9-254 4-207 (212)
127 PF12715 Abhydrolase_7: Abhydr 98.5 4.4E-07 9.6E-12 78.7 8.2 102 9-111 115-258 (390)
128 PF03403 PAF-AH_p_II: Platelet 98.5 2.8E-07 6E-12 81.7 7.1 105 9-114 100-263 (379)
129 COG0657 Aes Esterase/lipase [L 98.5 5.7E-05 1.2E-09 65.3 20.8 100 9-112 79-190 (312)
130 KOG1553 Predicted alpha/beta h 98.5 7.7E-07 1.7E-11 75.5 8.2 77 34-111 266-343 (517)
131 PF02129 Peptidase_S15: X-Pro 98.4 8.6E-07 1.9E-11 75.2 8.3 104 9-112 20-135 (272)
132 PRK04940 hypothetical protein; 98.4 2.3E-06 4.9E-11 67.2 8.4 51 211-266 127-178 (180)
133 PF02450 LCAT: Lecithin:choles 98.3 1.9E-06 4E-11 76.9 8.3 82 22-112 64-159 (389)
134 PF08840 BAAT_C: BAAT / Acyl-C 98.2 1.6E-05 3.4E-10 65.0 10.6 50 62-112 4-55 (213)
135 KOG3975 Uncharacterized conser 98.2 0.00012 2.7E-09 59.7 14.5 244 6-265 26-300 (301)
136 KOG2624 Triglyceride lipase-ch 98.2 4.5E-06 9.8E-11 73.9 6.8 105 8-113 72-199 (403)
137 PF12048 DUF3530: Protein of u 98.1 4.9E-05 1.1E-09 65.6 12.7 106 9-115 87-231 (310)
138 PF05677 DUF818: Chlamydia CHL 98.1 2.4E-05 5.2E-10 66.8 9.7 88 7-98 135-235 (365)
139 COG4188 Predicted dienelactone 98.1 1.7E-05 3.6E-10 68.6 8.6 90 10-99 72-180 (365)
140 PF10503 Esterase_phd: Esteras 98.1 5.1E-05 1.1E-09 62.1 11.0 104 9-112 16-131 (220)
141 PLN02606 palmitoyl-protein thi 98.1 3.6E-05 7.7E-10 65.2 10.3 102 9-114 26-133 (306)
142 KOG3724 Negative regulator of 98.1 1.5E-05 3.2E-10 74.3 8.5 102 8-113 88-220 (973)
143 COG4814 Uncharacterized protei 98.1 1.7E-05 3.7E-10 64.8 7.7 103 10-112 46-175 (288)
144 PF00756 Esterase: Putative es 98.0 3.8E-06 8.2E-11 70.2 3.8 52 61-112 96-149 (251)
145 PRK10439 enterobactin/ferric e 98.0 4.4E-05 9.5E-10 68.5 10.4 103 9-111 209-321 (411)
146 PF11339 DUF3141: Protein of u 98.0 0.00051 1.1E-08 61.9 15.7 97 10-113 69-175 (581)
147 KOG1515 Arylacetamide deacetyl 98.0 0.0025 5.4E-08 55.5 19.6 100 9-112 90-206 (336)
148 PF06057 VirJ: Bacterial virul 97.9 4.1E-05 9E-10 60.4 7.3 80 26-111 19-105 (192)
149 PF08386 Abhydrolase_4: TAP-li 97.9 5.9E-05 1.3E-09 54.2 7.3 60 208-267 34-93 (103)
150 PTZ00472 serine carboxypeptida 97.9 5.4E-05 1.2E-09 69.0 8.0 104 9-113 77-216 (462)
151 PLN02633 palmitoyl protein thi 97.8 0.00017 3.7E-09 61.2 9.6 101 9-113 25-131 (314)
152 KOG3253 Predicted alpha/beta h 97.8 0.00031 6.6E-09 64.1 11.6 60 208-267 304-373 (784)
153 KOG2100 Dipeptidyl aminopeptid 97.8 0.0011 2.4E-08 63.9 16.3 196 10-266 527-745 (755)
154 PF05705 DUF829: Eukaryotic pr 97.8 0.00075 1.6E-08 56.1 13.4 58 208-265 178-240 (240)
155 COG4782 Uncharacterized protei 97.8 0.00011 2.4E-09 63.2 8.3 89 7-97 114-210 (377)
156 PF03583 LIP: Secretory lipase 97.8 0.00088 1.9E-08 57.4 13.9 44 207-250 218-266 (290)
157 PF02089 Palm_thioest: Palmito 97.8 4E-05 8.8E-10 64.3 5.0 104 9-113 5-116 (279)
158 COG3150 Predicted esterase [Ge 97.7 0.0002 4.4E-09 54.9 7.2 78 12-100 2-81 (191)
159 COG3509 LpqC Poly(3-hydroxybut 97.6 0.00057 1.2E-08 57.4 9.8 101 10-114 62-180 (312)
160 COG4099 Predicted peptidase [G 97.6 0.0004 8.6E-09 58.3 8.8 100 10-111 192-302 (387)
161 PLN02517 phosphatidylcholine-s 97.6 0.00015 3.4E-09 66.4 6.6 88 23-112 156-262 (642)
162 KOG2369 Lecithin:cholesterol a 97.6 0.00013 2.9E-09 64.8 5.6 82 23-111 124-223 (473)
163 cd00741 Lipase Lipase. Lipase 97.6 0.00014 3.1E-09 56.0 5.3 52 61-112 8-66 (153)
164 KOG2281 Dipeptidyl aminopeptid 97.5 0.00038 8.2E-09 64.0 7.9 99 9-107 642-756 (867)
165 KOG3847 Phospholipase A2 (plat 97.5 0.00017 3.7E-09 60.8 5.2 38 10-47 119-156 (399)
166 cd00312 Esterase_lipase Estera 97.5 0.00028 6E-09 65.0 7.1 104 8-113 94-213 (493)
167 KOG2112 Lysophospholipase [Lip 97.5 0.00044 9.6E-09 55.1 7.1 99 10-110 4-125 (206)
168 KOG2541 Palmitoyl protein thio 97.4 0.0019 4.2E-08 53.4 10.0 97 10-112 24-127 (296)
169 PF05577 Peptidase_S28: Serine 97.4 0.0014 3.1E-08 59.4 9.8 105 9-113 28-148 (434)
170 PF01764 Lipase_3: Lipase (cla 97.3 0.00043 9.3E-09 52.3 5.3 37 61-98 48-84 (140)
171 KOG4840 Predicted hydrolases o 97.3 0.00067 1.4E-08 54.6 5.9 99 10-112 37-143 (299)
172 KOG3967 Uncharacterized conser 97.3 0.0037 8E-08 50.1 9.7 103 9-112 101-226 (297)
173 KOG3043 Predicted hydrolase re 97.3 0.0087 1.9E-07 48.4 11.9 61 208-268 164-240 (242)
174 COG2272 PnbA Carboxylesterase 97.2 0.001 2.2E-08 59.7 6.6 103 9-113 94-217 (491)
175 PF07082 DUF1350: Protein of u 97.1 0.0013 2.8E-08 54.1 6.4 96 11-110 19-122 (250)
176 COG0627 Predicted esterase [Ge 97.0 0.0035 7.6E-08 54.1 8.1 105 10-114 55-188 (316)
177 PF06259 Abhydrolase_8: Alpha/ 97.0 0.0015 3.2E-08 51.5 5.2 51 62-112 89-143 (177)
178 KOG2551 Phospholipase/carboxyh 96.9 0.0034 7.4E-08 50.6 6.7 60 207-267 162-223 (230)
179 COG2936 Predicted acyl esteras 96.9 0.0021 4.4E-08 59.2 5.9 81 31-111 75-157 (563)
180 cd00519 Lipase_3 Lipase (class 96.9 0.0022 4.7E-08 52.9 5.5 22 77-98 127-148 (229)
181 COG2819 Predicted hydrolase of 96.7 0.0029 6.3E-08 52.6 5.3 50 63-112 120-171 (264)
182 PF04301 DUF452: Protein of un 96.7 0.0088 1.9E-07 48.5 7.9 78 9-112 11-89 (213)
183 KOG3101 Esterase D [General fu 96.7 0.0039 8.4E-08 50.0 5.4 106 5-110 40-173 (283)
184 PLN02162 triacylglycerol lipas 96.7 0.0045 9.9E-08 55.5 6.3 37 60-97 261-297 (475)
185 PF11187 DUF2974: Protein of u 96.7 0.0039 8.5E-08 51.2 5.6 44 66-111 74-121 (224)
186 PLN00413 triacylglycerol lipas 96.6 0.006 1.3E-07 54.9 6.3 37 60-97 267-303 (479)
187 PF00135 COesterase: Carboxyle 96.4 0.0087 1.9E-07 55.5 6.8 104 9-112 125-244 (535)
188 PLN02454 triacylglycerol lipas 96.4 0.0056 1.2E-07 54.4 4.9 19 79-97 229-247 (414)
189 PLN02571 triacylglycerol lipas 96.3 0.0054 1.2E-07 54.5 4.6 37 61-97 208-245 (413)
190 PF10142 PhoPQ_related: PhoPQ- 96.2 0.074 1.6E-06 46.9 10.8 57 208-267 262-319 (367)
191 PLN02408 phospholipase A1 96.0 0.0098 2.1E-07 52.2 4.7 34 64-97 185-219 (365)
192 KOG4372 Predicted alpha/beta h 96.0 0.0056 1.2E-07 53.7 3.0 87 8-96 79-168 (405)
193 PLN02934 triacylglycerol lipas 96.0 0.01 2.2E-07 53.9 4.7 35 61-96 305-339 (515)
194 PF10340 DUF2424: Protein of u 95.9 0.077 1.7E-06 46.7 9.7 106 8-114 121-236 (374)
195 PLN02310 triacylglycerol lipas 95.8 0.012 2.7E-07 52.2 4.5 35 63-97 191-228 (405)
196 PLN02324 triacylglycerol lipas 95.8 0.014 3E-07 51.9 4.7 34 64-97 200-234 (415)
197 PF05277 DUF726: Protein of un 95.7 0.02 4.3E-07 50.0 5.3 49 66-114 207-261 (345)
198 PLN02802 triacylglycerol lipas 95.5 0.019 4.2E-07 52.1 4.7 35 63-97 314-349 (509)
199 PLN03037 lipase class 3 family 95.5 0.019 4.1E-07 52.3 4.5 35 63-97 300-337 (525)
200 PLN02753 triacylglycerol lipas 95.5 0.02 4.4E-07 52.2 4.6 34 64-97 294-331 (531)
201 PF11288 DUF3089: Protein of u 95.3 0.037 8E-07 44.7 5.3 41 59-99 76-116 (207)
202 COG3946 VirJ Type IV secretory 95.3 0.054 1.2E-06 47.7 6.5 71 26-102 277-350 (456)
203 KOG2183 Prolylcarboxypeptidase 95.1 0.091 2E-06 46.4 7.2 100 9-111 80-200 (492)
204 PLN02847 triacylglycerol lipas 95.1 0.034 7.4E-07 51.4 4.8 21 77-97 250-270 (633)
205 PLN02719 triacylglycerol lipas 95.0 0.035 7.5E-07 50.6 4.5 19 79-97 299-317 (518)
206 PLN02761 lipase class 3 family 95.0 0.036 7.8E-07 50.6 4.6 18 79-96 295-312 (527)
207 PTZ00472 serine carboxypeptida 94.9 0.056 1.2E-06 49.5 5.8 59 208-266 364-457 (462)
208 PF01083 Cutinase: Cutinase; 94.4 0.13 2.9E-06 40.7 6.1 97 11-111 7-120 (179)
209 COG1073 Hydrolases of the alph 94.3 0.14 3E-06 43.0 6.6 59 209-267 233-296 (299)
210 PF11144 DUF2920: Protein of u 94.0 0.12 2.7E-06 45.8 5.5 35 78-112 184-218 (403)
211 KOG4569 Predicted lipase [Lipi 93.9 0.088 1.9E-06 46.1 4.5 36 61-97 155-190 (336)
212 COG2382 Fes Enterochelin ester 93.7 0.1 2.2E-06 44.3 4.4 98 10-111 99-210 (299)
213 PF00450 Peptidase_S10: Serine 93.1 0.3 6.4E-06 43.8 6.7 105 9-113 40-181 (415)
214 KOG1551 Uncharacterized conser 92.8 1.4 3E-05 37.0 9.5 55 211-266 309-364 (371)
215 PF04083 Abhydro_lipase: Parti 92.7 0.086 1.9E-06 34.0 2.0 18 8-25 42-59 (63)
216 KOG2029 Uncharacterized conser 92.5 0.17 3.6E-06 46.8 4.1 34 59-92 505-540 (697)
217 PF00450 Peptidase_S10: Serine 92.1 0.26 5.6E-06 44.2 5.0 58 209-266 331-414 (415)
218 KOG2182 Hydrolytic enzymes of 91.5 2.1 4.6E-05 39.0 9.9 102 9-113 86-207 (514)
219 KOG4540 Putative lipase essent 90.3 0.54 1.2E-05 39.7 4.7 35 66-100 264-298 (425)
220 COG5153 CVT17 Putative lipase 90.3 0.54 1.2E-05 39.7 4.7 35 66-100 264-298 (425)
221 PF08237 PE-PPE: PE-PPE domain 90.3 1.3 2.8E-05 36.4 7.0 76 36-111 2-87 (225)
222 KOG1516 Carboxylesterase and r 90.3 0.93 2E-05 42.4 7.0 104 9-112 112-231 (545)
223 PLN02209 serine carboxypeptida 90.2 1.6 3.4E-05 39.8 8.1 58 208-266 351-433 (437)
224 KOG1202 Animal-type fatty acid 89.5 1.5 3.3E-05 44.2 7.6 94 7-111 2121-2217(2376)
225 COG1505 Serine proteases of th 89.1 6.3 0.00014 36.9 11.0 100 9-109 421-531 (648)
226 PLN02213 sinapoylglucose-malat 88.3 1.7 3.7E-05 37.7 6.7 58 208-266 233-315 (319)
227 PLN03016 sinapoylglucose-malat 87.3 1.4 3.1E-05 40.0 5.8 58 208-266 347-429 (433)
228 cd01714 ETF_beta The electron 85.8 4.1 8.9E-05 32.9 7.2 67 31-107 71-143 (202)
229 PF09949 DUF2183: Uncharacteri 85.8 6.6 0.00014 27.8 7.3 87 20-107 7-96 (100)
230 COG1770 PtrB Protease II [Amin 85.3 3.5 7.6E-05 38.9 7.2 102 9-111 448-560 (682)
231 PRK12467 peptide synthase; Pro 84.3 7.3 0.00016 45.4 10.5 101 10-114 3693-3796(3956)
232 COG4947 Uncharacterized protei 84.1 0.56 1.2E-05 36.6 1.3 35 78-112 101-135 (227)
233 PLN02209 serine carboxypeptida 83.8 3.9 8.5E-05 37.2 6.8 105 9-113 68-212 (437)
234 KOG1282 Serine carboxypeptidas 82.6 3.7 8.1E-05 37.4 6.2 58 209-266 364-446 (454)
235 PLN03016 sinapoylglucose-malat 82.2 5.3 0.00011 36.4 7.0 104 9-112 66-209 (433)
236 KOG2237 Predicted serine prote 82.2 1.9 4.2E-05 40.5 4.2 103 9-111 470-582 (712)
237 COG2939 Carboxypeptidase C (ca 81.6 2.6 5.5E-05 38.6 4.7 106 9-114 101-237 (498)
238 KOG2551 Phospholipase/carboxyh 80.2 11 0.00025 30.8 7.5 85 9-97 5-123 (230)
239 cd03818 GT1_ExpC_like This fam 80.1 7.9 0.00017 34.4 7.5 37 12-50 2-38 (396)
240 PLN02213 sinapoylglucose-malat 79.7 7 0.00015 33.9 6.8 60 38-97 3-70 (319)
241 PF00698 Acyl_transf_1: Acyl t 79.1 1.6 3.5E-05 37.8 2.6 30 66-96 73-102 (318)
242 TIGR03131 malonate_mdcH malona 78.0 2.8 6E-05 35.8 3.7 30 66-96 65-94 (295)
243 PF03610 EIIA-man: PTS system 77.7 22 0.00047 25.6 7.9 70 11-93 2-72 (116)
244 TIGR00128 fabD malonyl CoA-acy 76.8 3 6.6E-05 35.3 3.6 31 67-97 72-102 (290)
245 smart00827 PKS_AT Acyl transfe 76.8 3 6.6E-05 35.5 3.6 29 67-96 72-100 (298)
246 KOG2385 Uncharacterized conser 76.5 5.6 0.00012 36.6 5.2 39 76-114 445-488 (633)
247 PLN00021 chlorophyllase 74.6 7.7 0.00017 33.6 5.5 48 207-254 188-246 (313)
248 COG1073 Hydrolases of the alph 73.5 6.8 0.00015 32.6 4.9 88 10-100 50-154 (299)
249 TIGR00632 vsr DNA mismatch end 69.7 8.9 0.00019 28.0 4.0 34 9-42 56-113 (117)
250 COG2939 Carboxypeptidase C (ca 68.7 5.7 0.00012 36.4 3.5 58 208-266 425-489 (498)
251 TIGR01361 DAHP_synth_Bsub phos 67.8 48 0.001 27.9 8.7 75 5-88 128-206 (260)
252 PRK05579 bifunctional phosphop 67.0 52 0.0011 29.6 9.2 73 9-85 116-196 (399)
253 PRK02399 hypothetical protein; 66.0 67 0.0015 28.9 9.4 98 13-110 6-129 (406)
254 PRK13398 3-deoxy-7-phosphohept 65.6 68 0.0015 27.1 9.2 76 6-88 131-208 (266)
255 COG1752 RssA Predicted esteras 65.4 9.1 0.0002 33.0 4.0 33 67-100 29-61 (306)
256 TIGR00521 coaBC_dfp phosphopan 64.8 57 0.0012 29.3 9.0 72 10-85 113-193 (390)
257 COG0218 Predicted GTPase [Gene 64.1 9.4 0.0002 30.7 3.5 32 39-73 72-103 (200)
258 PRK11613 folP dihydropteroate 63.1 17 0.00037 31.0 5.2 73 9-90 133-223 (282)
259 PF06850 PHB_depo_C: PHB de-po 62.9 19 0.00041 28.9 5.0 60 208-267 134-201 (202)
260 PRK07313 phosphopantothenoylcy 62.5 25 0.00055 27.8 5.8 62 8-72 112-179 (182)
261 TIGR02816 pfaB_fam PfaB family 62.4 8.8 0.00019 35.9 3.5 30 67-97 254-284 (538)
262 KOG2112 Lysophospholipase [Lip 62.0 9.1 0.0002 30.9 3.1 55 208-266 144-202 (206)
263 COG3727 Vsr DNA G:T-mismatch r 61.5 16 0.00035 27.2 4.0 33 10-42 58-114 (150)
264 cd00006 PTS_IIA_man PTS_IIA, P 61.4 60 0.0013 23.6 7.6 73 11-95 3-75 (122)
265 PF06792 UPF0261: Uncharacteri 60.5 88 0.0019 28.2 9.2 99 12-110 3-127 (403)
266 COG4287 PqaA PhoPQ-activated p 60.4 8.6 0.00019 34.0 2.9 57 208-267 329-386 (507)
267 KOG1209 1-Acyl dihydroxyaceton 60.1 15 0.00032 30.1 3.9 37 8-45 5-41 (289)
268 KOG2624 Triglyceride lipase-ch 59.5 26 0.00057 31.6 5.9 61 208-268 332-398 (403)
269 cd07225 Pat_PNPLA6_PNPLA7 Pata 58.6 15 0.00032 31.8 4.1 62 24-99 3-64 (306)
270 PF07519 Tannase: Tannase and 57.8 22 0.00047 32.9 5.2 83 28-112 52-149 (474)
271 PF14253 AbiH: Bacteriophage a 56.9 12 0.00025 31.4 3.1 22 69-90 226-247 (270)
272 PRK10279 hypothetical protein; 56.4 16 0.00035 31.4 3.9 31 69-100 25-55 (300)
273 cd07198 Patatin Patatin-like p 56.0 16 0.00035 28.4 3.6 32 68-100 17-48 (172)
274 COG1448 TyrB Aspartate/tyrosin 54.7 75 0.0016 28.3 7.6 86 9-111 171-263 (396)
275 cd01715 ETF_alpha The electron 54.2 94 0.002 23.9 7.7 77 9-100 29-107 (168)
276 cd06143 PAN2_exo DEDDh 3'-5' e 53.7 12 0.00027 29.4 2.5 13 78-90 101-113 (174)
277 PF01012 ETF: Electron transfe 53.7 47 0.001 25.5 5.9 60 30-99 52-113 (164)
278 KOG1200 Mitochondrial/plastidi 51.9 83 0.0018 25.5 6.8 34 10-45 14-47 (256)
279 KOG2565 Predicted hydrolases o 51.6 19 0.00042 31.9 3.6 60 206-267 402-462 (469)
280 cd07227 Pat_Fungal_NTE1 Fungal 50.9 24 0.00053 29.8 4.1 31 67-98 28-58 (269)
281 PF03283 PAE: Pectinacetyleste 50.7 35 0.00077 30.3 5.2 38 74-111 152-193 (361)
282 cd07207 Pat_ExoU_VipD_like Exo 50.6 26 0.00055 27.6 4.1 33 66-99 16-48 (194)
283 COG4822 CbiK Cobalamin biosynt 50.1 95 0.0021 25.4 6.9 60 9-83 138-199 (265)
284 PF07519 Tannase: Tannase and 50.1 29 0.00063 32.0 4.8 58 210-267 355-426 (474)
285 cd01985 ETF The electron trans 49.5 95 0.0021 24.2 7.1 77 9-99 36-114 (181)
286 cd07230 Pat_TGL4-5_like Triacy 49.5 13 0.00029 33.7 2.4 40 64-105 89-128 (421)
287 PHA02114 hypothetical protein 49.1 26 0.00055 24.6 3.2 32 11-42 84-115 (127)
288 PRK13397 3-deoxy-7-phosphohept 49.1 1.5E+02 0.0032 24.9 8.3 39 5-43 118-157 (250)
289 PF09087 Cyc-maltodext_N: Cycl 48.7 12 0.00027 25.8 1.6 16 4-19 8-24 (88)
290 PF08255 Leader_Trp: Trp-opero 48.6 8.8 0.00019 16.6 0.6 11 11-21 3-13 (14)
291 PF00448 SRP54: SRP54-type pro 48.6 73 0.0016 25.5 6.4 73 27-109 74-148 (196)
292 cd07210 Pat_hypo_W_succinogene 48.6 31 0.00068 28.2 4.3 31 68-99 19-49 (221)
293 KOG1465 Translation initiation 48.1 30 0.00065 29.7 4.1 83 10-99 163-263 (353)
294 cd07229 Pat_TGL3_like Triacylg 47.9 15 0.00033 32.9 2.5 43 63-107 98-140 (391)
295 cd07209 Pat_hypo_Ecoli_Z1214_l 47.9 29 0.00062 28.2 4.0 33 67-100 16-48 (215)
296 PF03205 MobB: Molybdopterin g 47.6 28 0.0006 26.2 3.6 42 11-52 1-44 (140)
297 PRK11916 electron transfer fla 47.5 1.8E+02 0.004 25.2 9.0 61 28-99 40-102 (312)
298 PF12083 DUF3560: Domain of un 47.4 17 0.00037 27.0 2.3 22 64-86 29-50 (126)
299 cd06149 ISG20 DEDDh 3'-5' exon 47.0 17 0.00036 28.0 2.3 35 47-87 51-85 (157)
300 COG3571 Predicted hydrolase of 46.8 46 0.001 26.0 4.6 42 207-249 141-182 (213)
301 PRK14729 miaA tRNA delta(2)-is 46.1 92 0.002 26.9 6.9 76 9-86 3-101 (300)
302 COG2240 PdxK Pyridoxal/pyridox 46.0 1.2E+02 0.0026 25.8 7.4 83 29-117 21-117 (281)
303 TIGR01840 esterase_phb esteras 46.0 15 0.00033 29.5 2.1 25 210-234 170-194 (212)
304 COG1576 Uncharacterized conser 45.9 84 0.0018 24.2 5.8 11 36-46 67-77 (155)
305 PRK14974 cell division protein 45.8 1.4E+02 0.003 26.3 8.0 67 33-109 219-287 (336)
306 TIGR01425 SRP54_euk signal rec 45.5 1.1E+02 0.0025 27.8 7.7 70 29-108 175-246 (429)
307 PF05724 TPMT: Thiopurine S-me 45.4 24 0.00052 28.9 3.1 29 11-44 39-67 (218)
308 PF06057 VirJ: Bacterial virul 45.2 48 0.001 26.5 4.6 51 208-266 139-190 (192)
309 PF00975 Thioesterase: Thioest 45.2 56 0.0012 26.2 5.4 57 208-265 168-229 (229)
310 PRK04940 hypothetical protein; 44.9 1E+02 0.0022 24.4 6.5 85 12-113 2-92 (180)
311 PRK14569 D-alanyl-alanine synt 44.6 39 0.00084 28.9 4.5 37 8-44 2-43 (296)
312 PRK06193 hypothetical protein; 44.5 34 0.00073 27.8 3.8 51 58-111 135-186 (206)
313 PRK08762 molybdopterin biosynt 44.4 1.8E+02 0.0039 25.9 8.8 96 9-111 57-167 (376)
314 cd07232 Pat_PLPL Patain-like p 44.3 15 0.00033 33.1 2.0 42 63-106 82-123 (407)
315 PRK13256 thiopurine S-methyltr 44.2 24 0.00051 29.1 2.9 16 29-44 58-73 (226)
316 KOG2248 3'-5' exonuclease [Rep 44.1 21 0.00045 31.9 2.7 43 65-109 281-323 (380)
317 COG1926 Predicted phosphoribos 44.0 63 0.0014 26.3 5.1 49 61-109 8-57 (220)
318 PRK04435 hypothetical protein; 43.8 1.1E+02 0.0023 23.3 6.3 78 8-85 66-146 (147)
319 PF00326 Peptidase_S9: Prolyl 42.8 61 0.0013 25.8 5.2 62 9-73 144-208 (213)
320 cd07212 Pat_PNPLA9 Patatin-lik 42.7 31 0.00067 29.9 3.6 19 81-99 35-53 (312)
321 cd07228 Pat_NTE_like_bacteria 42.3 41 0.00088 26.2 3.9 31 69-100 20-50 (175)
322 PLN00022 electron transfer fla 42.2 78 0.0017 28.1 6.0 52 38-99 88-140 (356)
323 COG0541 Ffh Signal recognition 41.9 1.4E+02 0.003 27.3 7.4 71 29-109 175-247 (451)
324 KOG2521 Uncharacterized conser 41.8 1.9E+02 0.0041 25.6 8.2 82 10-91 39-122 (350)
325 COG2062 SixA Phosphohistidine 41.4 48 0.001 25.8 4.1 48 63-110 86-139 (163)
326 COG4188 Predicted dienelactone 41.1 16 0.00035 32.2 1.6 51 207-257 250-303 (365)
327 COG4553 DepA Poly-beta-hydroxy 40.9 2.4E+02 0.0053 24.5 9.9 93 19-115 114-211 (415)
328 COG3933 Transcriptional antite 40.9 2.4E+02 0.0053 25.8 8.8 69 10-91 110-178 (470)
329 PF10081 Abhydrolase_9: Alpha/ 40.6 55 0.0012 27.9 4.6 53 60-112 89-146 (289)
330 PRK06171 sorbitol-6-phosphate 40.6 2E+02 0.0044 23.5 8.8 43 1-46 1-43 (266)
331 cd07231 Pat_SDP1-like Sugar-De 40.6 22 0.00049 30.8 2.3 40 63-104 83-122 (323)
332 COG0331 FabD (acyl-carrier-pro 39.7 31 0.00068 29.9 3.1 29 69-97 75-104 (310)
333 cd07211 Pat_PNPLA8 Patatin-lik 39.3 70 0.0015 27.5 5.3 17 81-97 44-60 (308)
334 PRK13753 dihydropteroate synth 39.3 54 0.0012 28.0 4.4 48 40-94 170-218 (279)
335 KOG2872 Uroporphyrinogen decar 39.0 1.4E+02 0.003 25.7 6.6 70 10-86 253-336 (359)
336 PF08433 KTI12: Chromatin asso 38.5 41 0.00088 28.5 3.6 99 11-111 2-107 (270)
337 PF02230 Abhydrolase_2: Phosph 37.4 98 0.0021 24.8 5.6 42 9-50 155-199 (216)
338 PLN02752 [acyl-carrier protein 37.1 25 0.00054 30.8 2.1 18 80-97 126-143 (343)
339 KOG1282 Serine carboxypeptidas 36.9 67 0.0015 29.5 4.9 59 38-96 119-186 (454)
340 cd00423 Pterin_binding Pterin 36.8 62 0.0013 27.1 4.4 41 9-50 120-178 (258)
341 TIGR02883 spore_cwlD N-acetylm 36.4 87 0.0019 24.8 5.0 43 38-83 1-49 (189)
342 cd00739 DHPS DHPS subgroup of 36.2 1.4E+02 0.0031 25.0 6.5 74 9-91 120-211 (257)
343 cd04951 GT1_WbdM_like This fam 35.6 2.7E+02 0.0058 23.6 8.5 35 12-46 3-39 (360)
344 cd07208 Pat_hypo_Ecoli_yjju_li 35.2 57 0.0012 27.3 4.0 23 79-101 28-50 (266)
345 PRK08263 short chain dehydroge 34.6 2E+02 0.0043 23.8 7.3 32 12-45 5-36 (275)
346 cd06144 REX4_like DEDDh 3'-5' 34.6 38 0.00083 25.7 2.6 36 47-88 51-86 (152)
347 PRK13255 thiopurine S-methyltr 34.4 58 0.0013 26.5 3.8 29 9-44 39-67 (218)
348 PF11713 Peptidase_C80: Peptid 34.2 23 0.0005 27.3 1.3 47 43-90 60-116 (157)
349 PLN02748 tRNA dimethylallyltra 34.1 1.4E+02 0.003 27.6 6.5 75 10-86 22-120 (468)
350 cd07205 Pat_PNPLA6_PNPLA7_NTE1 33.4 78 0.0017 24.4 4.3 33 66-99 17-49 (175)
351 PF13207 AAA_17: AAA domain; P 33.3 64 0.0014 22.9 3.6 61 12-74 1-64 (121)
352 cd06145 REX1_like DEDDh 3'-5' 33.3 43 0.00093 25.4 2.7 37 47-88 48-85 (150)
353 PF01341 Glyco_hydro_6: Glycos 33.2 72 0.0016 27.5 4.2 45 38-83 64-113 (298)
354 COG1506 DAP2 Dipeptidyl aminop 33.0 1.2E+02 0.0027 29.0 6.2 42 9-51 551-598 (620)
355 TIGR02069 cyanophycinase cyano 32.9 1.4E+02 0.0031 24.9 6.0 42 4-45 23-66 (250)
356 TIGR01496 DHPS dihydropteroate 32.8 1.8E+02 0.0038 24.5 6.5 69 9-86 118-204 (257)
357 PF06833 MdcE: Malonate decarb 32.6 69 0.0015 26.5 3.8 55 39-95 68-125 (234)
358 PF06956 RtcR: Regulator of RN 32.3 1.1E+02 0.0024 24.1 4.7 52 213-269 45-99 (183)
359 KOG1283 Serine carboxypeptidas 31.8 95 0.0021 27.2 4.6 59 38-96 73-140 (414)
360 PRK12595 bifunctional 3-deoxy- 31.6 1.6E+02 0.0034 26.2 6.3 75 5-88 221-299 (360)
361 PF04763 DUF562: Protein of un 31.6 1.1E+02 0.0025 22.9 4.5 37 10-46 18-61 (146)
362 TIGR03586 PseI pseudaminic aci 31.5 2.2E+02 0.0047 25.0 7.0 80 5-94 130-210 (327)
363 PRK14046 malate--CoA ligase su 31.4 39 0.00084 30.4 2.5 32 77-108 118-149 (392)
364 cd07206 Pat_TGL3-4-5_SDP1 Tria 31.4 63 0.0014 27.9 3.6 37 65-103 86-122 (298)
365 PRK03363 fixB putative electro 31.2 1.5E+02 0.0033 25.7 5.9 58 30-98 42-102 (313)
366 TIGR03840 TMPT_Se_Te thiopurin 31.0 67 0.0014 26.1 3.6 16 29-44 49-64 (213)
367 COG2876 AroA 3-deoxy-D-arabino 30.8 2E+02 0.0043 24.4 6.2 41 4-44 147-188 (286)
368 PF03681 UPF0150: Uncharacteri 30.8 80 0.0017 18.5 3.1 33 34-72 11-43 (48)
369 cd03146 GAT1_Peptidase_E Type 30.3 89 0.0019 25.2 4.2 39 7-45 29-69 (212)
370 cd05312 NAD_bind_1_malic_enz N 30.2 1.8E+02 0.004 24.8 6.1 79 11-93 26-121 (279)
371 PF10503 Esterase_phd: Esteras 30.0 61 0.0013 26.6 3.2 27 207-233 168-194 (220)
372 PRK13982 bifunctional SbtC-lik 29.5 2.5E+02 0.0054 26.1 7.3 61 9-72 180-247 (475)
373 PRK08220 2,3-dihydroxybenzoate 29.3 1.9E+02 0.0042 23.3 6.3 35 9-46 8-42 (252)
374 PLN02695 GDP-D-mannose-3',5'-e 29.2 97 0.0021 27.4 4.6 41 2-46 15-55 (370)
375 PRK07206 hypothetical protein; 28.9 3E+02 0.0064 24.6 7.8 80 10-96 3-89 (416)
376 TIGR00959 ffh signal recogniti 28.3 3.7E+02 0.008 24.6 8.1 71 29-109 175-247 (428)
377 PRK10867 signal recognition pa 28.2 4.7E+02 0.01 23.9 9.4 70 29-108 176-247 (433)
378 PRK06849 hypothetical protein; 28.1 1.6E+02 0.0036 26.1 5.9 75 9-87 3-86 (389)
379 PF01715 IPPT: IPP transferase 28.1 44 0.00096 28.0 2.1 31 55-85 33-64 (253)
380 PRK05282 (alpha)-aspartyl dipe 27.9 1.8E+02 0.004 24.0 5.7 38 8-45 30-70 (233)
381 PRK08673 3-deoxy-7-phosphohept 27.8 4.2E+02 0.0092 23.3 9.0 78 5-89 196-275 (335)
382 TIGR02813 omega_3_PfaA polyket 27.6 58 0.0013 36.8 3.4 30 66-96 663-692 (2582)
383 PRK15416 lipopolysaccharide co 27.5 66 0.0014 26.0 2.9 21 67-88 142-162 (201)
384 PRK05571 ribose-5-phosphate is 27.2 2.8E+02 0.0062 21.1 7.6 70 26-106 16-85 (148)
385 PRK07069 short chain dehydroge 26.9 2.5E+02 0.0054 22.6 6.5 31 13-45 2-32 (251)
386 COG3887 Predicted signaling pr 26.8 1.4E+02 0.003 28.4 5.1 104 4-111 253-376 (655)
387 PF07521 RMMBL: RNA-metabolisi 26.8 52 0.0011 19.1 1.7 9 9-17 32-40 (43)
388 COG0293 FtsJ 23S rRNA methylas 26.6 1.5E+02 0.0033 24.0 4.8 34 9-45 46-79 (205)
389 PHA00350 putative assembly pro 26.4 1.1E+02 0.0023 27.7 4.3 35 11-47 2-40 (399)
390 PF03721 UDPG_MGDP_dh_N: UDP-g 26.3 88 0.0019 24.7 3.4 29 13-44 3-31 (185)
391 cd07224 Pat_like Patatin-like 26.2 1.1E+02 0.0023 25.3 4.0 22 79-100 30-51 (233)
392 KOG0780 Signal recognition par 25.5 3.8E+02 0.0082 24.3 7.3 66 29-104 176-241 (483)
393 KOG0736 Peroxisome assembly fa 25.3 3.8E+02 0.0082 26.8 7.8 63 45-111 778-842 (953)
394 cd02908 Macro_Appr_pase_like M 25.2 2.7E+02 0.0058 21.4 5.9 65 24-90 93-157 (165)
395 COG0552 FtsY Signal recognitio 25.1 3.4E+02 0.0073 23.9 6.9 97 2-109 187-292 (340)
396 PRK08226 short chain dehydroge 25.0 2.8E+02 0.006 22.6 6.5 33 11-45 7-39 (263)
397 TIGR03607 patatin-related prot 24.8 97 0.0021 30.4 4.0 31 66-97 52-85 (739)
398 COG4850 Uncharacterized conser 24.7 1.9E+02 0.0041 25.4 5.2 97 10-111 214-313 (373)
399 PF01972 SDH_sah: Serine dehyd 24.6 1.9E+02 0.0042 24.6 5.2 73 34-107 46-125 (285)
400 TIGR03712 acc_sec_asp2 accesso 24.6 68 0.0015 29.6 2.7 37 64-100 342-380 (511)
401 PLN02496 probable phosphopanto 24.5 3.4E+02 0.0074 22.1 6.5 63 9-73 132-199 (209)
402 PRK00431 RNase III inhibitor; 24.5 3.4E+02 0.0073 21.0 7.5 65 24-90 100-164 (177)
403 PF00091 Tubulin: Tubulin/FtsZ 24.4 96 0.0021 25.1 3.4 29 64-93 111-139 (216)
404 COG1255 Uncharacterized protei 24.3 78 0.0017 23.1 2.5 23 23-45 23-45 (129)
405 COG0337 AroB 3-dehydroquinate 24.0 5.2E+02 0.011 23.0 8.0 67 10-84 34-100 (360)
406 PF01075 Glyco_transf_9: Glyco 23.9 1E+02 0.0022 25.1 3.6 34 9-42 105-143 (247)
407 PRK00091 miaA tRNA delta(2)-is 23.8 2.6E+02 0.0057 24.2 6.1 75 10-90 4-102 (307)
408 PRK12828 short chain dehydroge 23.7 2.9E+02 0.0063 21.8 6.3 31 12-44 9-39 (239)
409 PF00862 Sucrose_synth: Sucros 23.6 77 0.0017 29.5 2.9 39 59-98 382-422 (550)
410 cd06136 TREX1_2 DEDDh 3'-5' ex 23.5 61 0.0013 25.3 2.1 39 47-87 67-106 (177)
411 TIGR00064 ftsY signal recognit 23.4 4.6E+02 0.0099 22.1 7.6 18 33-50 151-168 (272)
412 PRK05359 oligoribonuclease; Pr 23.3 78 0.0017 24.9 2.6 41 48-88 67-107 (181)
413 PRK06310 DNA polymerase III su 23.1 74 0.0016 26.5 2.6 37 47-88 61-97 (250)
414 PRK14581 hmsF outer membrane N 23.0 86 0.0019 30.4 3.2 78 8-86 47-143 (672)
415 TIGR03709 PPK2_rel_1 polyphosp 23.0 90 0.002 26.4 3.0 70 9-90 55-126 (264)
416 TIGR03325 BphB_TodD cis-2,3-di 22.9 4.2E+02 0.009 21.6 7.2 31 12-44 7-37 (262)
417 PF03193 DUF258: Protein of un 22.9 2.9E+02 0.0062 21.4 5.6 48 27-92 3-50 (161)
418 PF00484 Pro_CA: Carbonic anhy 22.7 1.3E+02 0.0027 22.7 3.6 33 61-94 39-71 (153)
419 PF13479 AAA_24: AAA domain 22.4 2.5E+02 0.0054 22.6 5.5 63 24-86 51-136 (213)
420 PF06309 Torsin: Torsin; Inte 22.3 3.3E+02 0.0072 20.2 5.5 55 9-73 51-115 (127)
421 KOG4306 Glycosylphosphatidylin 22.3 1.5E+02 0.0032 25.7 4.1 43 9-51 95-141 (306)
422 PRK06731 flhF flagellar biosyn 22.2 4.9E+02 0.011 22.0 8.4 75 25-109 142-219 (270)
423 TIGR02113 coaC_strep phosphopa 22.0 2.6E+02 0.0055 22.0 5.3 36 9-44 112-150 (177)
424 TIGR03707 PPK2_P_aer polyphosp 21.9 1E+02 0.0022 25.5 3.1 70 9-90 30-101 (230)
425 PF08257 Sulfakinin: Sulfakini 21.5 38 0.00082 12.7 0.2 7 243-249 2-8 (9)
426 PLN02840 tRNA dimethylallyltra 21.5 2.9E+02 0.0064 25.1 6.1 31 56-86 88-119 (421)
427 KOG4022 Dihydropteridine reduc 21.5 3.4E+02 0.0074 21.3 5.6 46 27-72 18-65 (236)
428 PRK03482 phosphoglycerate muta 21.4 2.5E+02 0.0055 22.4 5.4 34 59-94 121-157 (215)
429 PF09152 DUF1937: Domain of un 21.2 98 0.0021 22.6 2.5 23 17-40 90-112 (116)
430 TIGR00824 EIIA-man PTS system, 21.1 3.2E+02 0.007 19.6 7.1 74 11-96 4-77 (116)
431 PRK10964 ADP-heptose:LPS hepto 20.9 1.6E+02 0.0034 25.3 4.3 33 9-41 178-215 (322)
432 COG2230 Cfa Cyclopropane fatty 20.9 2.2E+02 0.0047 24.4 4.9 48 62-110 56-105 (283)
433 PF06180 CbiK: Cobalt chelatas 20.6 3.2E+02 0.007 23.0 5.9 36 9-44 142-179 (262)
434 PRK08085 gluconate 5-dehydroge 20.6 4.6E+02 0.01 21.2 7.6 41 1-44 1-41 (254)
435 cd07204 Pat_PNPLA_like Patatin 20.5 1.6E+02 0.0034 24.4 4.0 21 80-100 33-53 (243)
436 KOG2697 Histidinol dehydrogena 20.5 2.3E+02 0.005 24.5 4.9 51 38-90 234-286 (446)
437 PF06399 GFRP: GTP cyclohydrol 20.4 1.1E+02 0.0023 20.7 2.3 18 26-43 53-70 (83)
438 PRK10319 N-acetylmuramoyl-l-al 20.3 2.5E+02 0.0053 24.1 5.2 45 36-83 55-105 (287)
439 TIGR01830 3oxo_ACP_reduc 3-oxo 20.3 3.3E+02 0.0071 21.6 5.9 30 14-45 2-31 (239)
440 TIGR02362 dhaK1b probable dihy 20.3 1.9E+02 0.004 25.4 4.5 33 8-40 248-285 (326)
441 PRK15450 signal transduction p 20.2 1.1E+02 0.0023 20.7 2.3 31 218-249 43-73 (85)
442 cd01820 PAF_acetylesterase_lik 20.2 1.4E+02 0.003 23.8 3.6 38 50-87 4-42 (214)
443 PF02126 PTE: Phosphotriestera 20.2 2.6E+02 0.0056 24.2 5.4 78 6-89 180-260 (308)
444 PF14252 DUF4347: Domain of un 20.2 4.1E+02 0.0088 20.7 6.0 78 9-90 22-104 (165)
445 PF01751 Toprim: Toprim domain 20.2 2.2E+02 0.0047 19.6 4.2 33 224-256 8-40 (100)
No 1
>PLN02965 Probable pheophorbidase
Probab=100.00 E-value=1.6e-40 Score=279.44 Aligned_cols=251 Identities=34% Similarity=0.558 Sum_probs=167.6
Q ss_pred CCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeC
Q 024316 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHS 86 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHS 86 (269)
|+..+||||||++.+.++|+.+++.|++.+|+|+++|+||||.|+.+....++++++++++.++|++++..++++|||||
T Consensus 1 ~~~~~vvllHG~~~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhS 80 (255)
T PLN02965 1 MPEIHFVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPPDHKVILVGHS 80 (255)
T ss_pred CCceEEEEECCCCCCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 34568999999999999999999999777899999999999999865434579999999999999998432599999999
Q ss_pred hhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHH
Q 024316 87 LGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLT 166 (269)
Q Consensus 87 mGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (269)
|||.++..+|.++|++|++||++++..+..+.............. ...|. ..+... . ...........++..
T Consensus 81 mGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~ 152 (255)
T PLN02965 81 IGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGT-----EKIWD-YTFGEG-P-DKPPTGIMMKPEFVR 152 (255)
T ss_pred cchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhcc-----cccee-eeeccC-C-CCCcchhhcCHHHHH
Confidence 999999999999999999999999754322211100110000000 00000 000000 0 000001111122322
Q ss_pred HHHhcCCCHHhHHHHHHhcCCCccccccccccccCC-CCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCC
Q 024316 167 IKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFS-DEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGG 245 (269)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~ 245 (269)
..++...+............+..... +....... .....++|+++|+|++|.++|++.++.+.+.+++++++++++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~ 230 (255)
T PLN02965 153 HYYYNQSPLEDYTLSSKLLRPAPVRA--FQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDS 230 (255)
T ss_pred HHHhcCCCHHHHHHHHHhcCCCCCcc--hhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCC
Confidence 33333333222222222222211110 00000011 1123589999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHh
Q 024316 246 DHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 246 gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
||++++|+|++|++.|.+|+++
T Consensus 231 GH~~~~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 231 DHSAFFSVPTTLFQYLLQAVSS 252 (255)
T ss_pred CCchhhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999976
No 2
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=100.00 E-value=1.6e-37 Score=263.53 Aligned_cols=251 Identities=34% Similarity=0.578 Sum_probs=170.8
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
+++|||+||++.++++|+.++..|++.||+|+++|+||||.|.......++++++++++.++|+++...++++|||||||
T Consensus 18 ~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l~~~~~v~lvGhS~G 97 (273)
T PLN02211 18 PPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSLPENEKVILVGHSAG 97 (273)
T ss_pred CCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCCCCCEEEEEECch
Confidence 57899999999999999999999987799999999999998865443447999999999999999843479999999999
Q ss_pred hHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHHH
Q 024316 89 GVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIK 168 (269)
Q Consensus 89 G~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (269)
|+++..++.++|++|++||++++.++..+...... +.................... .. ..........+++....
T Consensus 98 G~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 172 (273)
T PLN02211 98 GLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDED---MKDGVPDLSEFGDVYELGFGL-GP-DQPPTSAIIKKEFRRKI 172 (273)
T ss_pred HHHHHHHHHhChhheeEEEEeccccCCCCCCHHHH---Hhccccchhhhccceeeeecc-CC-CCCCceeeeCHHHHHHH
Confidence 99999999899999999999987655333221100 000000000000000000000 00 00000111223333445
Q ss_pred HhcCCCHHhHHHHHHhcCCCccccccccccccC-CCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCC
Q 024316 169 IYQLCPPEDLELAKMLVRPGSMFIDNLSKESKF-SDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247 (269)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH 247 (269)
+++..+.++..+.....++.+.. .+...... ...++.++|++||+|++|+++|++.++.+++.+++++++.++ +||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~~~~~~l~-~gH 249 (273)
T PLN02211 173 LYQMSPQEDSTLAAMLLRPGPIL--ALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPPSQVYELE-SDH 249 (273)
T ss_pred HhcCCCHHHHHHHHHhcCCcCcc--ccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCccEEEEEC-CCC
Confidence 56655554444333334433211 01111100 112344799999999999999999999999999988999997 999
Q ss_pred CCCCCCcHHHHHHHHHHHHh
Q 024316 248 MAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 248 ~~~~e~p~~~~~~l~~f~~~ 267 (269)
++++|+|+++++.|.+++..
T Consensus 250 ~p~ls~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 250 SPFFSTPFLLFGLLIKAAAS 269 (273)
T ss_pred CccccCHHHHHHHHHHHHHH
Confidence 99999999999999998865
No 3
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=2.3e-35 Score=253.01 Aligned_cols=250 Identities=18% Similarity=0.199 Sum_probs=157.8
Q ss_pred cCCCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCccc------ccccchHHhHHHHHHHHHhCCCCC
Q 024316 5 VGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRI------EDVHTFHAYSEPLMEVLASLPAEE 78 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~------~~~~~~~~~~~~l~~~i~~l~~~~ 78 (269)
.|..|++|||+||++.+++.|+.+++.|++. |+|+++|+||||.|+.+. ...++++++++++.++|+++ +.+
T Consensus 25 ~G~~~~~vlllHG~~~~~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l-~~~ 102 (294)
T PLN02824 25 AGTSGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV-VGD 102 (294)
T ss_pred cCCCCCeEEEECCCCCChhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHh-cCC
Confidence 3434789999999999999999999999765 899999999999998642 13589999999999999999 458
Q ss_pred cEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCC--c---hhhhccCccccccCCCCcccccccccccCCCCC
Q 024316 79 KVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHR--P---SFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNP 153 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (269)
+++||||||||.++..+|.++|++|++||++++........ + ......+.... ....+....+... ..
T Consensus 103 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~ 175 (294)
T PLN02824 103 PAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLL----RETAVGKAFFKSV---AT 175 (294)
T ss_pred CeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHH----hchhHHHHHHHhh---cC
Confidence 99999999999999999999999999999999753211100 0 00000000000 0000000000000 00
Q ss_pred CccccccchhHHHHHHhcC--CCHHhHHHH-HHhcCCCc--cccccc--ccc-ccCCCCCCCCccEEEEEeCCCCCCChH
Q 024316 154 SHISMLFGREFLTIKIYQL--CPPEDLELA-KMLVRPGS--MFIDNL--SKE-SKFSDEGYGSVKRVYLVCEEDIGLPKQ 225 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~--~~~~~~--~~~-~~~~~~~~~~~P~l~i~g~~D~~~~~~ 225 (269)
.... ...+...+... ..++..... ....++.. .+...+ ... .........++|+++|+|++|.++|.+
T Consensus 176 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~ 251 (294)
T PLN02824 176 ---PETV-KNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVE 251 (294)
T ss_pred ---HHHH-HHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChH
Confidence 0000 00000000000 000000000 00000000 000000 000 000011224789999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 226 FQHWMIQNYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
.++.+.+..+.+++++++++||++++|+|++|++.|.+|+++
T Consensus 252 ~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 252 LGRAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred HHHHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 998888878888999999999999999999999999999974
No 4
>PRK00870 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=1.9e-34 Score=248.25 Aligned_cols=246 Identities=15% Similarity=0.084 Sum_probs=156.1
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccc-cccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
+++||||||++.++..|+.+++.|.+.||+|+++|+||||.|+.+.. ..++++++++++.++++++ +.++++||||||
T Consensus 46 ~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l-~~~~v~lvGhS~ 124 (302)
T PRK00870 46 GPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL-DLTDVTLVCQDW 124 (302)
T ss_pred CCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc-CCCCEEEEEECh
Confidence 68999999999999999999999987789999999999999976532 3479999999999999998 557999999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcc-cccccccccCCCCCCccccccchhHHH
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDS-WLDTQFSQCDASNPSHISMLFGREFLT 166 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (269)
||.++..+|.++|++|++||++++..+............+.+.. ..... ........ . ....+..+...
T Consensus 125 Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~------~~~~~~~~~~~ 194 (302)
T PRK00870 125 GGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFS---QYSPVLPVGRLVNG-G------TVRDLSDAVRA 194 (302)
T ss_pred HHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhccc---ccCchhhHHHHhhc-c------ccccCCHHHHH
Confidence 99999999999999999999998643321111000001000000 00000 00000000 0 00001111111
Q ss_pred HHHhcCCCHHhHH----HHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCe---E
Q 024316 167 IKIYQLCPPEDLE----LAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNE---V 239 (269)
Q Consensus 167 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~---~ 239 (269)
.. .......... ............................++|+++|+|++|.++|... +.+.+.+++++ +
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~ 272 (302)
T PRK00870 195 AY-DAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPH 272 (302)
T ss_pred Hh-hcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccccccce
Confidence 11 0000000000 00000000000000000000000112347999999999999999866 78888888776 7
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 240 MEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 240 ~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
++++++||++++|+|++|++.|.+|+++
T Consensus 273 ~~i~~~gH~~~~e~p~~~~~~l~~fl~~ 300 (302)
T PRK00870 273 PTIKGAGHFLQEDSGEELAEAVLEFIRA 300 (302)
T ss_pred eeecCCCccchhhChHHHHHHHHHHHhc
Confidence 8999999999999999999999999875
No 5
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=100.00 E-value=1.7e-34 Score=245.52 Aligned_cols=238 Identities=12% Similarity=0.094 Sum_probs=155.7
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
++||||+||++.++..|..+++.|.+ +|+||++|+||||.|+.+. ..++++++++++.++|+++ +.++++|||||||
T Consensus 25 ~~plvllHG~~~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~-~~~~~~~~~~~~~~~i~~l-~~~~~~LvG~S~G 101 (276)
T TIGR02240 25 LTPLLIFNGIGANLELVFPFIEALDP-DLEVIAFDVPGVGGSSTPR-HPYRFPGLAKLAARMLDYL-DYGQVNAIGVSWG 101 (276)
T ss_pred CCcEEEEeCCCcchHHHHHHHHHhcc-CceEEEECCCCCCCCCCCC-CcCcHHHHHHHHHHHHHHh-CcCceEEEEECHH
Confidence 47999999999999999999999965 6999999999999998654 3479999999999999999 5679999999999
Q ss_pred hHHHHHHhhhCCcccceeEEEeccCCCCCCCch-hhhccCccccccCCCCccccccccc-ccCCCCCCccccccchhHHH
Q 024316 89 GVTLALAADKFPHKISVAVFVTAFMPDTTHRPS-FVLEQVPYSEKMGKEDDSWLDTQFS-QCDASNPSHISMLFGREFLT 166 (269)
Q Consensus 89 G~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (269)
|+++..+|.++|++|++||++++.......... ....... .. ......... .... ..........+....
T Consensus 102 G~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 173 (276)
T TIGR02240 102 GALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMA-SP------RRYIQPSHGIHIAP-DIYGGAFRRDPELAM 173 (276)
T ss_pred HHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhc-Cc------hhhhccccccchhh-hhccceeeccchhhh
Confidence 999999999999999999999975421111100 0000000 00 000000000 0000 000000000001000
Q ss_pred HHHhcC--CCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcC
Q 024316 167 IKIYQL--CPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKG 244 (269)
Q Consensus 167 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~ 244 (269)
...... ......... ... .+ ...........++|+++|+|++|.++|++.++++.+.++++++++++
T Consensus 174 ~~~~~~~~~~~~~~~~~--~~~-------~~-~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~- 242 (276)
T TIGR02240 174 AHASKVRSGGKLGYYWQ--LFA-------GL-GWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIID- 242 (276)
T ss_pred hhhhhcccCCCchHHHH--HHH-------Hc-CCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEc-
Confidence 000000 000000000 000 00 00000011234789999999999999999999999999999999998
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhh
Q 024316 245 GDHMAMLSDPQKLCDCLSQISLKY 268 (269)
Q Consensus 245 ~gH~~~~e~p~~~~~~l~~f~~~~ 268 (269)
+||++++|+|+++++.|.+|++++
T Consensus 243 ~gH~~~~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 243 DGHLFLITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred CCCchhhccHHHHHHHHHHHHHHh
Confidence 599999999999999999999863
No 6
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=4.1e-34 Score=251.78 Aligned_cols=249 Identities=16% Similarity=0.123 Sum_probs=151.4
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
++|||||||++.+...|.++++.|++ +|+||++|+||||.|+.+.+..++++++++++.++++++ ..++++|||||||
T Consensus 88 gp~lvllHG~~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~l~~l-~~~~~~lvGhS~G 165 (360)
T PLN02679 88 GPPVLLVHGFGASIPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLEEV-VQKPTVLIGNSVG 165 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCccccHHHHHHHHHHHHHHh-cCCCeEEEEECHH
Confidence 48999999999999999999999965 799999999999999876444579999999999999998 5589999999999
Q ss_pred hHHHHHHhh-hCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCc-ccc-ccchhHH
Q 024316 89 GVTLALAAD-KFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSH-ISM-LFGREFL 165 (269)
Q Consensus 89 G~i~~~~a~-~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~ 165 (269)
|.++..++. ++|++|++||++++........ ......... .......+...... + .... ... ......+
T Consensus 166 g~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 237 (360)
T PLN02679 166 SLACVIAASESTRDLVRGLVLLNCAGGMNNKA---VVDDWRIKL--LLPLLWLIDFLLKQ--R-GIASALFNRVKQRDNL 237 (360)
T ss_pred HHHHHHHHHhcChhhcCEEEEECCcccccccc---ccchHHHhh--hcchHHHHHHHhhc--h-hhHHHHHHHhcCHHHH
Confidence 999887775 5799999999998643211000 000000000 00000000000000 0 0000 000 0000001
Q ss_pred HHH---HhcCC---CHHhHHHHHHhcCCCcc---ccccccc---cccCCCCCCCCccEEEEEeCCCCCCChHH-----HH
Q 024316 166 TIK---IYQLC---PPEDLELAKMLVRPGSM---FIDNLSK---ESKFSDEGYGSVKRVYLVCEEDIGLPKQF-----QH 228 (269)
Q Consensus 166 ~~~---~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~P~l~i~g~~D~~~~~~~-----~~ 228 (269)
... .+... .++.............. +...+.. ..........++|+|+|+|++|.++|++. .+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~~~ 317 (360)
T PLN02679 238 KNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKYFS 317 (360)
T ss_pred HHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHHHH
Confidence 000 00000 00000000000000000 0000000 00000112247899999999999998863 23
Q ss_pred HHHHhCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 229 WMIQNYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 229 ~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
.+.+.+|++++++++++||++++|+|++|++.|.+|+++
T Consensus 318 ~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 318 SLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred hhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHh
Confidence 456668899999999999999999999999999999976
No 7
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-33 Score=233.88 Aligned_cols=249 Identities=17% Similarity=0.193 Sum_probs=162.1
Q ss_pred CCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccc-cccchHHhHHHHHHHHHhCCCCCcEEEEEe
Q 024316 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLASLPAEEKVILVGH 85 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-~~~~~~~~~~~l~~~i~~l~~~~~vilVGH 85 (269)
++|+.|+|+||++.+..+|+.+++.|+.+||||+|+|+||+|.|+.+.. ..||+..++.++..+|+.| +.+++++|||
T Consensus 42 ~~gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~L-g~~k~~lvgH 120 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDELVGDIVALLDHL-GLKKAFLVGH 120 (322)
T ss_pred CCCCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHh-ccceeEEEec
Confidence 3589999999999999999999999999999999999999999998765 6799999999999999999 4789999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhc-cCccccccCCCCcccccccccccCCCCCCcc-ccccchh
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLE-QVPYSEKMGKEDDSWLDTQFSQCDASNPSHI-SMLFGRE 163 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 163 (269)
+||+++++.+|..+|++|+++|+++...+.....+..... .+.+ .+....+.. + ..... ....+.+
T Consensus 121 DwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~---------~~y~~~fQ~--~-~~~E~~~s~~~~~ 188 (322)
T KOG4178|consen 121 DWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGK---------SYYICLFQE--P-GKPETELSKDDTE 188 (322)
T ss_pred cchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCc---------cceeEeccc--c-CcchhhhccchhH
Confidence 9999999999999999999999998654411111111110 1111 000000000 0 00000 0000000
Q ss_pred HHHHHHh---------cC---------CCHHhHHHHHHhcCCCcc--ccc---ccc-cccc-CCCCCCCCccEEEEEeCC
Q 024316 164 FLTIKIY---------QL---------CPPEDLELAKMLVRPGSM--FID---NLS-KESK-FSDEGYGSVKRVYLVCEE 218 (269)
Q Consensus 164 ~~~~~~~---------~~---------~~~~~~~~~~~~~~~~~~--~~~---~~~-~~~~-~~~~~~~~~P~l~i~g~~ 218 (269)
.....+. .. ...++.+..........+ .++ .+. .... ....+..++|+++|+|+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~ 268 (322)
T KOG4178|consen 189 MLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDL 268 (322)
T ss_pred HhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecC
Confidence 0000000 00 012222221111121111 011 111 1100 111223478999999999
Q ss_pred CCCCChHH-HHHHHHhCCCC-eEEEEcCCCCCCCCCCcHHHHHHHHHHHHhh
Q 024316 219 DIGLPKQF-QHWMIQNYPVN-EVMEIKGGDHMAMLSDPQKLCDCLSQISLKY 268 (269)
Q Consensus 219 D~~~~~~~-~~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~~ 268 (269)
|.+.+... .+...+..|.. +.++++|+|||++.|+|+++++++..|+++|
T Consensus 269 D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 269 DPVLPYPIFGELYRKDVPRLTERVVIEGIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cccccchhHHHHHHHhhccccceEEecCCcccccccCHHHHHHHHHHHHHhh
Confidence 99887763 44556666765 6778899999999999999999999999876
No 8
>PRK03204 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=9.5e-34 Score=242.14 Aligned_cols=249 Identities=10% Similarity=0.076 Sum_probs=153.1
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
|++||||||++.++..|+.+++.|.+ +|+|+++|+||||.|+.+....++++++++++.++++++ +.+++++||||||
T Consensus 34 ~~~iv~lHG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvG~S~G 111 (286)
T PRK03204 34 GPPILLCHGNPTWSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPSGFGYQIDEHARVIGEFVDHL-GLDRYLSMGQDWG 111 (286)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCCccccCHHHHHHHHHHHHHHh-CCCCEEEEEECcc
Confidence 68999999999999999999999965 699999999999999876544578999999999999998 5589999999999
Q ss_pred hHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccc--cccCCCCCCccccccchhHHH
Q 024316 89 GVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQF--SQCDASNPSHISMLFGREFLT 166 (269)
Q Consensus 89 G~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 166 (269)
|.++..++..+|++|+++|++++...............+.... + .........+ ....+ .. . ..........
T Consensus 112 g~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~ 185 (286)
T PRK03204 112 GPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSP-P--VQYAILRRNFFVERLIP-AG-T-EHRPSSAVMA 185 (286)
T ss_pred HHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccc-c--chhhhhhhhHHHHHhcc-cc-c-cCCCCHHHHH
Confidence 9999999999999999999987643111000000000000000 0 0000000000 00000 00 0 0001111111
Q ss_pred HHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChH-HHHHHHHhCCCCeEEEEcCC
Q 024316 167 IKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQ-FQHWMIQNYPVNEVMEIKGG 245 (269)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~ 245 (269)
........+...................+............++|+++|+|++|.++++. ..+.+.+.+|++++++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~~~~~~i~~a 265 (286)
T PRK03204 186 HYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPDHVLVELPNA 265 (286)
T ss_pred HhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCCCeEEEcCCC
Confidence 11000000110000000000000000000000000001112799999999999988655 56788899999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHH
Q 024316 246 DHMAMLSDPQKLCDCLSQIS 265 (269)
Q Consensus 246 gH~~~~e~p~~~~~~l~~f~ 265 (269)
||++++|+|+++++.|.+|+
T Consensus 266 GH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 266 KHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred cccccccCHHHHHHHHHHhc
Confidence 99999999999999999997
No 9
>PRK03592 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=1.4e-33 Score=242.05 Aligned_cols=254 Identities=17% Similarity=0.129 Sum_probs=154.3
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
+|+|||||||++.+...|+.+++.|.+. |+||++|+||||.|+.+. ..++++++++++.++++++ +.++++||||||
T Consensus 26 ~g~~vvllHG~~~~~~~w~~~~~~L~~~-~~via~D~~G~G~S~~~~-~~~~~~~~a~dl~~ll~~l-~~~~~~lvGhS~ 102 (295)
T PRK03592 26 EGDPIVFLHGNPTSSYLWRNIIPHLAGL-GRCLAPDLIGMGASDKPD-IDYTFADHARYLDAWFDAL-GLDDVVLVGHDW 102 (295)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhhC-CEEEEEcCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCCeEEEEECH
Confidence 4789999999999999999999999875 699999999999998765 3479999999999999999 558999999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCC-CCCCchhhhccCccccccCC-CCccccc-ccc-cccCCCCCCccccccchh
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPD-TTHRPSFVLEQVPYSEKMGK-EDDSWLD-TQF-SQCDASNPSHISMLFGRE 163 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 163 (269)
||.++..+|.++|++|++||++++.... .................... ....... ..+ .... ... ....+.++
T Consensus 103 Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 179 (295)
T PRK03592 103 GSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVL--PGS-ILRPLSDE 179 (295)
T ss_pred HHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcc--cCc-ccccCCHH
Confidence 9999999999999999999999974321 11000000000000000000 0000000 000 0000 000 00011111
Q ss_pred HHHHHHhcCCCHHhHHHHHHhcCCCc--ccccccccc-ccC-CCCCCCCccEEEEEeCCCCCCChHHHHHH-HHhCCCCe
Q 024316 164 FLTIKIYQLCPPEDLELAKMLVRPGS--MFIDNLSKE-SKF-SDEGYGSVKRVYLVCEEDIGLPKQFQHWM-IQNYPVNE 238 (269)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~-~~~~~~~~P~l~i~g~~D~~~~~~~~~~~-~~~~~~~~ 238 (269)
.+....................+... ......... ... ......++|+++|+|++|.++++..++.. .+..++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~ 259 (295)
T PRK03592 180 EMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRSWPNQLE 259 (295)
T ss_pred HHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHHhhhhcc
Confidence 11111000001111110001110000 000000000 000 01123478999999999999955555444 45567889
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 239 VMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 239 ~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
+++++++||++++|+|+++++.|.+|+++
T Consensus 260 ~~~i~~~gH~~~~e~p~~v~~~i~~fl~~ 288 (295)
T PRK03592 260 ITVFGAGLHFAQEDSPEEIGAAIAAWLRR 288 (295)
T ss_pred eeeccCcchhhhhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999975
No 10
>PRK10349 carboxylesterase BioH; Provisional
Probab=100.00 E-value=3.7e-33 Score=234.57 Aligned_cols=237 Identities=19% Similarity=0.219 Sum_probs=147.7
Q ss_pred cCCCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 5 VGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
.|++.+|||||||++.+++.|+.+++.|.+ .|+|+++|+||||.|+.. ..++++++++++.+ + ..++++|||
T Consensus 9 ~G~g~~~ivllHG~~~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~--~~~~~~~~~~~l~~----~-~~~~~~lvG 80 (256)
T PRK10349 9 KGQGNVHLVLLHGWGLNAEVWRCIDEELSS-HFTLHLVDLPGFGRSRGF--GALSLADMAEAVLQ----Q-APDKAIWLG 80 (256)
T ss_pred cCCCCCeEEEECCCCCChhHHHHHHHHHhc-CCEEEEecCCCCCCCCCC--CCCCHHHHHHHHHh----c-CCCCeEEEE
Confidence 465345799999999999999999999976 599999999999999754 24688888887764 3 347899999
Q ss_pred eChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhH
Q 024316 85 HSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREF 164 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (269)
|||||.++..+|.++|++|++||++++......... .. ...... ...+... +. .. .......+
T Consensus 81 hS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~-~~--~~~~~~-----~~~~~~~-~~-----~~---~~~~~~~~ 143 (256)
T PRK10349 81 WSLGGLVASQIALTHPERVQALVTVASSPCFSARDE-WP--GIKPDV-----LAGFQQQ-LS-----DD---FQRTVERF 143 (256)
T ss_pred ECHHHHHHHHHHHhChHhhheEEEecCccceecCCC-CC--cccHHH-----HHHHHHH-HH-----hc---hHHHHHHH
Confidence 999999999999999999999999986322111000 00 000000 0000000 00 00 00000000
Q ss_pred HHHHHhcCCC-HHhH-HHHHHhcC-CCccc---cc---cccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC
Q 024316 165 LTIKIYQLCP-PEDL-ELAKMLVR-PGSMF---ID---NLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP 235 (269)
Q Consensus 165 ~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~---~~---~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 235 (269)
+....+.... ..+. .+...... +.... .. .+............++|+++|+|++|.++|.+.++.+.+.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~ 223 (256)
T PRK10349 144 LALQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP 223 (256)
T ss_pred HHHHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCC
Confidence 0000000000 0000 00000000 00000 00 000000000112247999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 236 VNEVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 236 ~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
++++++++++||++++|+|++|++.|.+|-.
T Consensus 224 ~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 224 HSESYIFAKAAHAPFISHPAEFCHLLVALKQ 254 (256)
T ss_pred CCeEEEeCCCCCCccccCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999854
No 11
>PRK10673 acyl-CoA esterase; Provisional
Probab=100.00 E-value=5.5e-32 Score=226.87 Aligned_cols=234 Identities=16% Similarity=0.219 Sum_probs=154.8
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
+++|||||||++.+...|..++..|.+ +|+||++|+||||.|+... .++++++++++.++|+++ ..++++||||||
T Consensus 15 ~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~--~~~~~~~~~d~~~~l~~l-~~~~~~lvGhS~ 90 (255)
T PRK10673 15 NNSPIVLVHGLFGSLDNLGVLARDLVN-DHDIIQVDMRNHGLSPRDP--VMNYPAMAQDLLDTLDAL-QIEKATFIGHSM 90 (255)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHhh-CCeEEEECCCCCCCCCCCC--CCCHHHHHHHHHHHHHHc-CCCceEEEEECH
Confidence 468999999999999999999999965 6999999999999998653 479999999999999998 457899999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHH
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTI 167 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (269)
||.++..+|.++|++|+++|++++......... . ....... .. ...... . ........+..
T Consensus 91 Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~--~-~~~~~~~----------~~-~~~~~~-~----~~~~~~~~~~~ 151 (255)
T PRK10673 91 GGKAVMALTALAPDRIDKLVAIDIAPVDYHVRR--H-DEIFAAI----------NA-VSEAGA-T----TRQQAAAIMRQ 151 (255)
T ss_pred HHHHHHHHHHhCHhhcceEEEEecCCCCccchh--h-HHHHHHH----------HH-hhhccc-c----cHHHHHHHHHH
Confidence 999999999999999999999985321110000 0 0000000 00 000000 0 00000000000
Q ss_pred HHhcCCCHHhHHHHHHhcCCCcc--c----cccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEE
Q 024316 168 KIYQLCPPEDLELAKMLVRPGSM--F----IDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVME 241 (269)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.+ .............+.... . ................++|+++|+|++|..++++.++.+.+.++++++++
T Consensus 152 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~ 228 (255)
T PRK10673 152 HL---NEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHV 228 (255)
T ss_pred hc---CCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEE
Confidence 00 000000000000000000 0 00000000001112237899999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 242 IKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 242 i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
++++||++++|+|+++++.|.+|+++
T Consensus 229 ~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 229 IAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred eCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 99999999999999999999999864
No 12
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=100.00 E-value=4.5e-32 Score=230.74 Aligned_cols=246 Identities=16% Similarity=0.126 Sum_probs=149.3
Q ss_pred CCceEEEecCCCCCccchHH---HHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYK---LKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~---~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
++++||||||++.+...|.. .+..|.+.||+|+++|+||||.|+....+......+++++.++++.+ +.+++++||
T Consensus 29 ~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~lvG 107 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL-DIEKAHLVG 107 (282)
T ss_pred CCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHHHHHc-CCCCeeEEE
Confidence 47899999999988887864 35566667899999999999999865322112225789999999998 567999999
Q ss_pred eChhhHHHHHHhhhCCcccceeEEEeccCCCCC-CCch--hhhccCccccccCCCCcccccccccccCCCCCCccccccc
Q 024316 85 HSLGGVTLALAADKFPHKISVAVFVTAFMPDTT-HRPS--FVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFG 161 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (269)
|||||.++..+|.++|++|+++|++++...... .... .......+.. ...........+.... .+ .....
T Consensus 108 ~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~---~~~~~ 180 (282)
T TIGR03343 108 NSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLY--AEPSYETLKQMLNVFL--FD---QSLIT 180 (282)
T ss_pred ECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHh--cCCCHHHHHHHHhhCc--cC---cccCc
Confidence 999999999999999999999999986421100 0000 0000000000 0000000000000000 00 00001
Q ss_pred hhHHHHHHh-cCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEE
Q 024316 162 REFLTIKIY-QLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVM 240 (269)
Q Consensus 162 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~ 240 (269)
......... ....+...................+. ......++|+++|+|++|.++|++.++.+.+.+|+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~~~ 255 (282)
T TIGR03343 181 EELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVT-----ARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQLH 255 (282)
T ss_pred HHHHHhHHHHhhcCHHHHHHHHHhccccccccchHH-----HHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCCEEE
Confidence 111000000 00001110000000000000000000 011224789999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 241 EIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 241 ~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
+++++||++++|+|++|++.|.+|+.
T Consensus 256 ~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 256 VFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred EeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 99999999999999999999999985
No 13
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=100.00 E-value=9.4e-32 Score=236.90 Aligned_cols=248 Identities=14% Similarity=0.107 Sum_probs=155.8
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccc---cccchHHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE---DVHTFHAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~---~~~~~~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
++++||||||++.+.+.|+++++.|++ +|+||++|+||||.|+++.. ..+++++++++|.++|+++ ..++++|||
T Consensus 126 ~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l-~~~~~~LvG 203 (383)
T PLN03084 126 NNPPVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDEL-KSDKVSLVV 203 (383)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHh-CCCCceEEE
Confidence 368999999999999999999999975 79999999999999987642 2579999999999999999 557999999
Q ss_pred eChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCccccccc-cccc-CCCCCCccccccch
Q 024316 85 HSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQ-FSQC-DASNPSHISMLFGR 162 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 162 (269)
|||||+++..+|.++|++|++||++++...............+.... ...+.... .... ....... ......
T Consensus 204 ~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (383)
T PLN03084 204 QGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFL-----LGEIFSQDPLRASDKALTSCG-PYAMKE 277 (383)
T ss_pred ECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHH-----hhhhhhcchHHHHhhhhcccC-ccCCCH
Confidence 99999999999999999999999999753321100000000000000 00000000 0000 0000000 000011
Q ss_pred hHHHHHH--hcCCC--HHhHH-HHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCC
Q 024316 163 EFLTIKI--YQLCP--PEDLE-LAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVN 237 (269)
Q Consensus 163 ~~~~~~~--~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~ 237 (269)
+...... +.... ..... ...............+... ......++|+++|||++|.+++++.++.+.+. +++
T Consensus 278 e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~---l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~-~~a 353 (383)
T PLN03084 278 DDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSI---LTDKNWKTPITVCWGLRDRWLNYDGVEDFCKS-SQH 353 (383)
T ss_pred HHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhh---hccccCCCCEEEEeeCCCCCcCHHHHHHHHHh-cCC
Confidence 1100000 00000 00000 0001100000000001100 00112478999999999999999988888876 578
Q ss_pred eEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 238 EVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 238 ~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
+++++++|||++++|+|++++++|.+|+.+
T Consensus 354 ~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 354 KLIELPMAGHHVQEDCGEELGGIISGILSK 383 (383)
T ss_pred eEEEECCCCCCcchhCHHHHHHHHHHHhhC
Confidence 899999999999999999999999999863
No 14
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=100.00 E-value=2.2e-31 Score=225.42 Aligned_cols=243 Identities=17% Similarity=0.146 Sum_probs=154.9
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
+++|||+||++.+...|+.+++.|++ +|+|+++|+||||.|+.+....++++++++++.++++++ +.++++|||||||
T Consensus 28 ~~~vv~~hG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~lvG~S~G 105 (278)
T TIGR03056 28 GPLLLLLHGTGASTHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSALCAAE-GLSPDGVIGHSAG 105 (278)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHHHHHHHHHHc-CCCCceEEEECcc
Confidence 68999999999999999999999965 699999999999999866544579999999999999998 4578999999999
Q ss_pred hHHHHHHhhhCCcccceeEEEeccCCCC-CCCc--hhhhccCccccccCCCCcccccccccccCCCCCCc-----ccccc
Q 024316 89 GVTLALAADKFPHKISVAVFVTAFMPDT-THRP--SFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSH-----ISMLF 160 (269)
Q Consensus 89 G~i~~~~a~~~p~~v~~lvli~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 160 (269)
|.++..+|.++|++++++|++++..... +... ............ ........ ... .. .... ....+
T Consensus 106 g~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~ 179 (278)
T TIGR03056 106 AAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNP---FTPPMMSR-GAA-DQ-QRVERLIRDTGSLL 179 (278)
T ss_pred HHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcc---cchHHHHh-hcc-cC-cchhHHhhcccccc
Confidence 9999999999999999999998643211 1000 000000000000 00000000 000 00 0000 00000
Q ss_pred chhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEE
Q 024316 161 GREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVM 240 (269)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~ 240 (269)
.+.......................... .... ........++|+++|+|++|.++|++..+.+.+.+++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~~~~~ 252 (278)
T TIGR03056 180 DKAGMTYYGRLIRSPAHVDGALSMMAQW-----DLAP--LNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPTATLH 252 (278)
T ss_pred ccchhhHHHHhhcCchhhhHHHHHhhcc-----cccc--hhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccCCeEE
Confidence 0000000000000000000000000000 0000 00011224789999999999999999999999889999999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 241 EIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 241 ~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
+++++||++++|+|+++++.|.+|++
T Consensus 253 ~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 253 VVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred EECCCCCcccccCHHHHHHHHHHHhC
Confidence 99999999999999999999999974
No 15
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=100.00 E-value=2.4e-31 Score=238.91 Aligned_cols=253 Identities=14% Similarity=0.151 Sum_probs=152.7
Q ss_pred CceEEEecCCCCCccchHH-HHHHHH---hCCCeEEEeCCCCCCCCCcccccccchHHhHHHHH-HHHHhCCCCCcEEEE
Q 024316 9 EKHFVLVHGVNHGAWCWYK-LKARLV---AGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLM-EVLASLPAEEKVILV 83 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~-~~~~L~---~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~-~~i~~l~~~~~vilV 83 (269)
++||||+||++.+...|.. +++.|. +.+|+|+++|+||||.|+.+.+..++++++++++. .+++.+ +.++++||
T Consensus 201 k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~ytl~~~a~~l~~~ll~~l-g~~k~~LV 279 (481)
T PLN03087 201 KEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLYTLREHLEMIERSVLERY-KVKSFHIV 279 (481)
T ss_pred CCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcCCHHHHHHHHHHHHHHHc-CCCCEEEE
Confidence 4799999999999999985 557665 25899999999999999876545689999999995 889988 56899999
Q ss_pred EeChhhHHHHHHhhhCCcccceeEEEeccCCCCCC--Cch-hhhccCc-cccccCCCCcccccccccccCCCCCCcc-cc
Q 024316 84 GHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTH--RPS-FVLEQVP-YSEKMGKEDDSWLDTQFSQCDASNPSHI-SM 158 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (269)
||||||+++..+|.++|++|++||++++....... ... ....... ....+...........+... .+... ..
T Consensus 280 GhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~ 356 (481)
T PLN03087 280 AHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHI---SRTICLVI 356 (481)
T ss_pred EECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHhcccccCCccccchhHHHHHHHH---Hhhhhccc
Confidence 99999999999999999999999999863211110 000 0111000 00000000000000000000 00000 00
Q ss_pred ccchhHHHHH--HhcCCCHHhHHHHHHhcC-CCcccccc----ccc-----cccCCC-CCCCCccEEEEEeCCCCCCChH
Q 024316 159 LFGREFLTIK--IYQLCPPEDLELAKMLVR-PGSMFIDN----LSK-----ESKFSD-EGYGSVKRVYLVCEEDIGLPKQ 225 (269)
Q Consensus 159 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~-----~~~~~~-~~~~~~P~l~i~g~~D~~~~~~ 225 (269)
......+... .......... ....... ........ +.. ...... ....++|+++|+|++|.++|++
T Consensus 357 ~~~~~~~~~~~~l~~~~~~~~~-l~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~ 435 (481)
T PLN03087 357 CKNHRLWEFLTRLLTRNRMRTF-LIEGFFCHTHNAAWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVE 435 (481)
T ss_pred ccchHHHHHHHHHhhhhhhhHH-HHHHHHhccchhhHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHH
Confidence 0000000000 0000000000 0000000 00000000 000 000000 0124799999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEcCCCCCCCC-CCcHHHHHHHHHHHH
Q 024316 226 FQHWMIQNYPVNEVMEIKGGDHMAML-SDPQKLCDCLSQISL 266 (269)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~l~~f~~ 266 (269)
..+.+.+.+|++++++|+++||++++ |+|+++++.|.+|.+
T Consensus 436 ~~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~ 477 (481)
T PLN03087 436 CSYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWR 477 (481)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhh
Confidence 99999999999999999999999996 999999999999975
No 16
>PLN02578 hydrolase
Probab=99.98 E-value=2.5e-31 Score=233.68 Aligned_cols=246 Identities=17% Similarity=0.180 Sum_probs=154.1
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
+|+|||||||++.++..|+.+++.|++ +|+|+++|+||||.|+++. ..++.+.+++++.++++++ ..+++++|||||
T Consensus 85 ~g~~vvliHG~~~~~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~-~~~~~~~~a~~l~~~i~~~-~~~~~~lvG~S~ 161 (354)
T PLN02578 85 EGLPIVLIHGFGASAFHWRYNIPELAK-KYKVYALDLLGFGWSDKAL-IEYDAMVWRDQVADFVKEV-VKEPAVLVGNSL 161 (354)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCcc-cccCHHHHHHHHHHHHHHh-ccCCeEEEEECH
Confidence 478999999999999999999999965 6999999999999998764 3589999999999999998 457999999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhc------cCccccccCCCCcccccccccccCCCCCCccccccc
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLE------QVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFG 161 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (269)
||.++..+|.++|++|+++|++++..... ........ ....... ......+.......... . ....
T Consensus 162 Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-----~~~~ 233 (354)
T PLN02578 162 GGFTALSTAVGYPELVAGVALLNSAGQFG-SESREKEEAIVVEETVLTRFV-VKPLKEWFQRVVLGFLF-W-----QAKQ 233 (354)
T ss_pred HHHHHHHHHHhChHhcceEEEECCCcccc-ccccccccccccccchhhHHH-hHHHHHHHHHHHHHHHH-H-----HhcC
Confidence 99999999999999999999998642211 00000000 0000000 00000000000000000 0 0000
Q ss_pred hhHHHH---HHhcCCC-HHhHHHHHHhcC----CCc--cccc----cccccccCC---CCCCCCccEEEEEeCCCCCCCh
Q 024316 162 REFLTI---KIYQLCP-PEDLELAKMLVR----PGS--MFID----NLSKESKFS---DEGYGSVKRVYLVCEEDIGLPK 224 (269)
Q Consensus 162 ~~~~~~---~~~~~~~-~~~~~~~~~~~~----~~~--~~~~----~~~~~~~~~---~~~~~~~P~l~i~g~~D~~~~~ 224 (269)
+..+.. ..+.... ..+. ....... +.. .+.. .+....... .....++|+++|+|++|.++|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 234 PSRIESVLKSVYKDKSNVDDY-LVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred HHHHHHHHHHhcCCcccCCHH-HHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 000000 0000000 0000 0000000 000 0000 000000000 0122479999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 225 QFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
+.++.+.+.+|++++++++ +||+++.|+|+++++.|.+|++
T Consensus 313 ~~~~~l~~~~p~a~l~~i~-~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYPDTTLVNLQ-AGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCCCCEEEEeC-CCCCccccCHHHHHHHHHHHHh
Confidence 9999999999999999995 9999999999999999999985
No 17
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.98 E-value=4.1e-32 Score=226.48 Aligned_cols=233 Identities=14% Similarity=0.214 Sum_probs=155.5
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
++++|||+||++.++..|..+++.|.+ +|+|+++|+||||.|+......++++++++++.++++.+ ..++++|+||||
T Consensus 12 ~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~G~S~ 89 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGSYWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDAL-NIERFHFVGHAL 89 (257)
T ss_pred CCCEEEEEcCCCcchhHHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHh-CCCcEEEEEech
Confidence 367999999999999999999999965 799999999999999865545689999999999999988 457899999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhh--ccCccccccCCCCcccccccccccCCCCCCccccccchhHH
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVL--EQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFL 165 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (269)
||+++..+|.++|++|+++|++++............. ....... ....+..... ...+...++
T Consensus 90 Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----------~~~~~~~~~ 154 (257)
T TIGR03611 90 GGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHA----GPEAYVHAQA-----------LFLYPADWI 154 (257)
T ss_pred hHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhcc----Ccchhhhhhh-----------hhhccccHh
Confidence 9999999998999999999999864331110000000 0000000 0000000000 000000000
Q ss_pred HHH-----------HhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhC
Q 024316 166 TIK-----------IYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY 234 (269)
Q Consensus 166 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 234 (269)
.+. ................... .++. ......++|+++++|++|.++|++.++.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~ 224 (257)
T TIGR03611 155 SENAARLAADEAHALAHFPGKANVLRRINALEA-----FDVS-----ARLDRIQHPVLLIANRDDMLVPYTQSLRLAAAL 224 (257)
T ss_pred hccchhhhhhhhhcccccCccHHHHHHHHHHHc-----CCcH-----HHhcccCccEEEEecCcCcccCHHHHHHHHHhc
Confidence 000 0000000000000000000 0000 011224789999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 235 PVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 235 ~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
++++++.++++||++++|+|+++++.|.+|++.
T Consensus 225 ~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 225 PNAQLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred CCceEEEECCCCCCccccCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999863
No 18
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.98 E-value=3.6e-31 Score=220.32 Aligned_cols=233 Identities=17% Similarity=0.110 Sum_probs=141.0
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
+++||||||++.+++.|+++++.| + +|+|+++|+||||.|+.+. ..+++++++++.++++.+ +.++++|||||||
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~--~~~~~~~~~~l~~~l~~~-~~~~~~lvG~S~G 76 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEAL-P-DYPRLYIDLPGHGGSAAIS--VDGFADVSRLLSQTLQSY-NILPYWLVGYSLG 76 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHc-C-CCCEEEecCCCCCCCCCcc--ccCHHHHHHHHHHHHHHc-CCCCeEEEEECHH
Confidence 678999999999999999999998 4 6999999999999998654 349999999999999998 5689999999999
Q ss_pred hHHHHHHhhhCCcc-cceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCC---CC---Cccccccc
Q 024316 89 GVTLALAADKFPHK-ISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDAS---NP---SHISMLFG 161 (269)
Q Consensus 89 G~i~~~~a~~~p~~-v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~ 161 (269)
|.++..+|.++|++ |++||++++... ......... .... ...|... +...... .. ......+.
T Consensus 77 g~va~~~a~~~~~~~v~~lvl~~~~~~-~~~~~~~~~-~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 146 (242)
T PRK11126 77 GRIAMYYACQGLAGGLCGLIVEGGNPG-LQNAEERQA-RWQN-------DRQWAQR-FRQEPLEQVLADWYQQPVFASLN 146 (242)
T ss_pred HHHHHHHHHhCCcccccEEEEeCCCCC-CCCHHHHHH-HHhh-------hHHHHHH-hccCcHHHHHHHHHhcchhhccC
Confidence 99999999888665 999999875421 111100000 0000 0001000 0000000 00 00000000
Q ss_pred hhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEE
Q 024316 162 REFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVME 241 (269)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
................... .......... ............++|+++|+|++|..+. .++++ .++++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-~~~~~~~ 215 (242)
T PRK11126 147 AEQRQQLVAKRSNNNGAAV-AAMLEATSLA----KQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-LALPLHV 215 (242)
T ss_pred ccHHHHHHHhcccCCHHHH-HHHHHhcCcc----cCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-hcCeEEE
Confidence 0000000000000000000 0000000000 0000000112247899999999998542 22333 3678999
Q ss_pred EcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 242 IKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 242 i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
++++||++++|+|+++++.|.+|+++
T Consensus 216 i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 216 IPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred eCCCCCchhhhChHHHHHHHHHHHhh
Confidence 99999999999999999999999975
No 19
>PRK06489 hypothetical protein; Provisional
Probab=99.97 E-value=6.3e-31 Score=231.70 Aligned_cols=248 Identities=10% Similarity=0.135 Sum_probs=145.9
Q ss_pred CceEEEecCCCCCccchH--HHHHHH-------HhCCCeEEEeCCCCCCCCCccccc------ccchHHhHHHHHHHH-H
Q 024316 9 EKHFVLVHGVNHGAWCWY--KLKARL-------VAGGHRVTAVDLAASGINMKRIED------VHTFHAYSEPLMEVL-A 72 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~--~~~~~L-------~~~g~~Via~Dl~G~G~S~~~~~~------~~~~~~~~~~l~~~i-~ 72 (269)
++|||||||++.+.+.|. .+.+.| ...+|+||++|+||||.|+.+.+. .++++++++++.+++ +
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~ 148 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTE 148 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHH
Confidence 689999999999988886 555544 134799999999999999865321 479999999988865 7
Q ss_pred hCCCCCcEE-EEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccC-ccccccCCCCcccccccccccCC
Q 024316 73 SLPAEEKVI-LVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQV-PYSEKMGKEDDSWLDTQFSQCDA 150 (269)
Q Consensus 73 ~l~~~~~vi-lVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (269)
++ +.++++ ||||||||+++..+|.++|++|++||++++.... ........... ..... ....+......
T Consensus 149 ~l-gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---- 219 (360)
T PRK06489 149 GL-GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTE-MSGRNWMWRRMLIESIR---NDPAWNNGNYT---- 219 (360)
T ss_pred hc-CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCccc-ccHHHHHHHHHHHHHHH---hCCCCCCCCCC----
Confidence 77 456774 8999999999999999999999999999864211 11000000000 00000 00000000000
Q ss_pred CCCCccccccchh--HH------HHHHhcCCCHHhHHHHHHhc----CCCc-ccccccccccc---CCCCCCCCccEEEE
Q 024316 151 SNPSHISMLFGRE--FL------TIKIYQLCPPEDLELAKMLV----RPGS-MFIDNLSKESK---FSDEGYGSVKRVYL 214 (269)
Q Consensus 151 ~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~---~~~~~~~~~P~l~i 214 (269)
............ .+ .................... .... .+...+..... .......++|+|+|
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI 298 (360)
T PRK06489 220 -TQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAI 298 (360)
T ss_pred -CCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEE
Confidence 000000000000 00 00000000000000000000 0000 00000000000 00112247999999
Q ss_pred EeCCCCCCChHHH--HHHHHhCCCCeEEEEcCC----CCCCCCCCcHHHHHHHHHHHHh
Q 024316 215 VCEEDIGLPKQFQ--HWMIQNYPVNEVMEIKGG----DHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 215 ~g~~D~~~~~~~~--~~~~~~~~~~~~~~i~~~----gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
+|++|.++|++.. +.+++.+|++++++|++| ||+++ |+|++|++.|.+|+++
T Consensus 299 ~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~ 356 (360)
T PRK06489 299 NSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQ 356 (360)
T ss_pred ecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHh
Confidence 9999999999875 788999999999999986 99997 8999999999999975
No 20
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.97 E-value=4.6e-31 Score=231.69 Aligned_cols=240 Identities=13% Similarity=0.120 Sum_probs=149.5
Q ss_pred CceEEEecCCCCCccc-hHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCC-----CCcEEE
Q 024316 9 EKHFVLVHGVNHGAWC-WYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPA-----EEKVIL 82 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~-w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~-----~~~vil 82 (269)
.++|||+||++.++.. |+.+++.|++.||+|+++|+||||.|+.+....++++++++++.++++.+.. ..+++|
T Consensus 87 ~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~L 166 (349)
T PLN02385 87 KAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFL 166 (349)
T ss_pred CeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 3579999999988764 6889999988899999999999999986543345899999999999987621 237999
Q ss_pred EEeChhhHHHHHHhhhCCcccceeEEEeccCCCCC--CCchhhhccCccccccCCCCcccccccccccCCCCCCcccccc
Q 024316 83 VGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTT--HRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLF 160 (269)
Q Consensus 83 VGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (269)
|||||||+++..++.++|++|+++|++++...... ..+. ........... ....+ .+. + ........+
T Consensus 167 vGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~-~~~~~~~~~~~--~~p~~---~~~---~-~~~~~~~~~ 236 (349)
T PLN02385 167 FGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPP-LVLQILILLAN--LLPKA---KLV---P-QKDLAELAF 236 (349)
T ss_pred EEeccchHHHHHHHHhCcchhhheeEecccccccccccCch-HHHHHHHHHHH--HCCCc---eec---C-CCccccccc
Confidence 99999999999999999999999999987432110 0110 00000000000 00000 000 0 000000000
Q ss_pred chh---HHHHHHh-cCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhC--
Q 024316 161 GRE---FLTIKIY-QLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY-- 234 (269)
Q Consensus 161 ~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-- 234 (269)
... ....... ..............++.. ..+.. .....++|+|+|+|++|.++|++.++.+.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~-----~l~~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~ 307 (349)
T PLN02385 237 RDLKKRKMAEYNVIAYKDKPRLRTAVELLRTT----QEIEM-----QLEEVSLPLLILHGEADKVTDPSVSKFLYEKASS 307 (349)
T ss_pred cCHHHHHHhhcCcceeCCCcchHHHHHHHHHH----HHHHH-----hcccCCCCEEEEEeCCCCccChHHHHHHHHHcCC
Confidence 000 0000000 000000000000000000 00000 11124799999999999999999999988876
Q ss_pred CCCeEEEEcCCCCCCCCCCcHH----HHHHHHHHHHh
Q 024316 235 PVNEVMEIKGGDHMAMLSDPQK----LCDCLSQISLK 267 (269)
Q Consensus 235 ~~~~~~~i~~~gH~~~~e~p~~----~~~~l~~f~~~ 267 (269)
++.++++|+++||++++|+|++ +++.|.+|+++
T Consensus 308 ~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~ 344 (349)
T PLN02385 308 SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDS 344 (349)
T ss_pred CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHH
Confidence 4678999999999999999987 77888888875
No 21
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.97 E-value=8.6e-31 Score=226.12 Aligned_cols=245 Identities=22% Similarity=0.292 Sum_probs=155.7
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhC-CCeEEEeCCCCCC-CCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEe
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAG-GHRVTAVDLAASG-INMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGH 85 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~-g~~Via~Dl~G~G-~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGH 85 (269)
.++||||||||+.+.+.|+++++.|.+. |++|+|+|++||| .|+.+.+..|++.++++.+..+.... ..++++||||
T Consensus 57 ~~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~-~~~~~~lvgh 135 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEV-FVEPVSLVGH 135 (326)
T ss_pred CCCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhh-cCcceEEEEe
Confidence 4789999999999999999999999765 3899999999999 55555656699999999999999988 4578999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEe---ccCCCCCCCchhh---hccCccccccCCCCcccccccccccCCCCCCccccc
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVT---AFMPDTTHRPSFV---LEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISML 159 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (269)
||||.++..+|+.+|+.|++||+++ +............ .+.+.... ..+...... . + ...
T Consensus 136 S~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~-----~--~-~~~ 201 (326)
T KOG1454|consen 136 SLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSAL------ELLIPLSLT-----E--P-VRL 201 (326)
T ss_pred CcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHh------hhcCccccc-----c--c-hhh
Confidence 9999999999999999999999444 3222111111011 01000000 000000000 0 0 000
Q ss_pred cchhHHHHHHhc-CCCHHhHHHHHHh-cCCC-ccc-----ccc---ccc--cccCCCCC-CCCccEEEEEeCCCCCCChH
Q 024316 160 FGREFLTIKIYQ-LCPPEDLELAKML-VRPG-SMF-----IDN---LSK--ESKFSDEG-YGSVKRVYLVCEEDIGLPKQ 225 (269)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~-----~~~---~~~--~~~~~~~~-~~~~P~l~i~g~~D~~~~~~ 225 (269)
+........... ............. .++. ..+ ... +-. .......+ -.++|++++||++|+++|.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~ 281 (326)
T KOG1454|consen 202 VSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLE 281 (326)
T ss_pred eeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHH
Confidence 000000000000 0000000000001 0100 000 000 000 00011111 22599999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 226 FQHWMIQNYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
.++.+.+.+|++++++|+++||.+|+|+|++++++|..|+..
T Consensus 282 ~~~~~~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~ 323 (326)
T KOG1454|consen 282 LAEELKKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIAR 323 (326)
T ss_pred HHHHHHhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHH
Confidence 999999888999999999999999999999999999999975
No 22
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.97 E-value=2e-30 Score=214.17 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=145.0
Q ss_pred C-ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 9 E-KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 9 g-~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
| ++|||+||++.+++.|+.+++.|.+ +|+|+++|+||||.|+... .++++++++++.+.+ .++++||||||
T Consensus 3 g~~~iv~~HG~~~~~~~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~~--~~~~~~~~~~~~~~~-----~~~~~lvG~S~ 74 (245)
T TIGR01738 3 GNVHLVLIHGWGMNAEVFRCLDEELSA-HFTLHLVDLPGHGRSRGFG--PLSLADAAEAIAAQA-----PDPAIWLGWSL 74 (245)
T ss_pred CCceEEEEcCCCCchhhHHHHHHhhcc-CeEEEEecCCcCccCCCCC--CcCHHHHHHHHHHhC-----CCCeEEEEEcH
Confidence 5 7999999999999999999999965 7999999999999997543 358888888776543 26899999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCCCCCC-ch-h----hhccCccccccCCCCcccccccccccCCCCCCccccccc
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPDTTHR-PS-F----VLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFG 161 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (269)
||.++..+|.++|++|.++|++++........ .. . ....+.... .......+......... .. . .....
T Consensus 75 Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-~-~~~~~ 149 (245)
T TIGR01738 75 GGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQL--SDDYQRTIERFLALQTL-GT-P-TARQD 149 (245)
T ss_pred HHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHh--hhhHHHHHHHHHHHHHh-cC-C-ccchH
Confidence 99999999999999999999998643211000 00 0 000000000 00000000000000000 00 0 00000
Q ss_pred hhHHHHHHhcCCCH--HhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeE
Q 024316 162 REFLTIKIYQLCPP--EDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEV 239 (269)
Q Consensus 162 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~ 239 (269)
...+...+.....+ .......... ............++|+++|+|++|.++|++.++.+.+.++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~ 219 (245)
T TIGR01738 150 ARALKQTLLARPTPNVQVLQAGLEIL----------ATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSEL 219 (245)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHh----------hcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCCCCeE
Confidence 00000000000000 0000000000 00000001123478999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHH
Q 024316 240 MEIKGGDHMAMLSDPQKLCDCLSQIS 265 (269)
Q Consensus 240 ~~i~~~gH~~~~e~p~~~~~~l~~f~ 265 (269)
++++++||++++|+|++|++.|.+|+
T Consensus 220 ~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 220 YIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred EEeCCCCCCccccCHHHHHHHHHhhC
Confidence 99999999999999999999999985
No 23
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.97 E-value=1.5e-30 Score=227.96 Aligned_cols=249 Identities=16% Similarity=0.120 Sum_probs=148.4
Q ss_pred cCCCCceEEEecCCCCCcc------------chHHHHH---HHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHH
Q 024316 5 VGMEEKHFVLVHGVNHGAW------------CWYKLKA---RLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLME 69 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~------------~w~~~~~---~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~ 69 (269)
.|.+|.|+|||||++.++. .|..+++ .|.+.+|+||++|+||||.|.. ..++++++++++.+
T Consensus 53 ~G~~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~---~~~~~~~~a~dl~~ 129 (343)
T PRK08775 53 IGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLD---VPIDTADQADAIAL 129 (343)
T ss_pred eccCCCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCC---CCCCHHHHHHHHHH
Confidence 4544668888888877765 6888886 5743479999999999998842 23688999999999
Q ss_pred HHHhCCCCCc-EEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhh-hccCccccccC--CCCc--ccccc
Q 024316 70 VLASLPAEEK-VILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFV-LEQVPYSEKMG--KEDD--SWLDT 143 (269)
Q Consensus 70 ~i~~l~~~~~-vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~ 143 (269)
+++++ +.++ ++||||||||+++..+|.++|++|++||++++............ ..+........ .... ....
T Consensus 130 ll~~l-~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 207 (343)
T PRK08775 130 LLDAL-GIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALAR- 207 (343)
T ss_pred HHHHc-CCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHH-
Confidence 99999 4455 57999999999999999999999999999987532111000000 00000000000 0000 0000
Q ss_pred cccccCCCCCCccccccchhHHHHHHhcCCC---------HHhHHH--HHHhc-CCC-cccccccccc-ccCCCCCCCCc
Q 024316 144 QFSQCDASNPSHISMLFGREFLTIKIYQLCP---------PEDLEL--AKMLV-RPG-SMFIDNLSKE-SKFSDEGYGSV 209 (269)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~-~~~-~~~~~~~~~~-~~~~~~~~~~~ 209 (269)
..... .......+...+..... ...... ..... ... ..+....... .........++
T Consensus 208 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~ 278 (343)
T PRK08775 208 QLAML---------SYRTPEEFEERFDAPPEVINGRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRV 278 (343)
T ss_pred HHHHH---------HcCCHHHHHHHhCCCccccCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCC
Confidence 00000 00000000000000000 000000 00000 000 0000000000 00001122478
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHhC-CCCeEEEEcC-CCCCCCCCCcHHHHHHHHHHHHh
Q 024316 210 KRVYLVCEEDIGLPKQFQHWMIQNY-PVNEVMEIKG-GDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 210 P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~~i~~-~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
|+|+|+|++|.++|++..+.+.+.+ |++++++|++ +||++++|+|++|++.|.+|+++
T Consensus 279 PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 279 PTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRS 338 (343)
T ss_pred CeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999888888877 6899999985 99999999999999999999975
No 24
>PHA02857 monoglyceride lipase; Provisional
Probab=99.97 E-value=8.6e-30 Score=216.38 Aligned_cols=234 Identities=14% Similarity=0.132 Sum_probs=144.9
Q ss_pred eEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC---CCCcEEEEEeCh
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP---AEEKVILVGHSL 87 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~---~~~~vilVGHSm 87 (269)
.|+|+||++.++..|..+++.|.+.||+|+++|+||||.|+.......++.++.+++.+.++.+. ..++++|+||||
T Consensus 27 ~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~lvG~S~ 106 (276)
T PHA02857 27 LVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTYPGVPVFLLGHSM 106 (276)
T ss_pred EEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEcCc
Confidence 45555999999999999999998889999999999999997643334577777888887776431 235899999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHH
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTI 167 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (269)
||+++..+|.++|++|+++|++++................... .+....... . .. ...+.+.....
T Consensus 107 GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~-~~---~~~~~~~~~~~ 172 (276)
T PHA02857 107 GATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMG--------IFYPNKIVG--K-LC---PESVSRDMDEV 172 (276)
T ss_pred hHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHH--------HhCCCCccC--C-CC---HhhccCCHHHH
Confidence 9999999999999999999999874331111000000000000 000000000 0 00 00000000000
Q ss_pred HHhcCCCH-----HhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhC-CCCeEEE
Q 024316 168 KIYQLCPP-----EDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY-PVNEVME 241 (269)
Q Consensus 168 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~~ 241 (269)
..+...+. ....+....... ...+.. .....++|+++|+|++|.++|++.++++.+.+ +..++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~ 243 (276)
T PHA02857 173 YKYQYDPLVNHEKIKAGFASQVLKA----TNKVRK-----IIPKIKTPILILQGTNNEISDVSGAYYFMQHANCNREIKI 243 (276)
T ss_pred HHHhcCCCccCCCccHHHHHHHHHH----HHHHHH-----hcccCCCCEEEEecCCCCcCChHHHHHHHHHccCCceEEE
Confidence 00000000 000000000000 000000 11224799999999999999999999988876 4678999
Q ss_pred EcCCCCCCCCCCc---HHHHHHHHHHHHh
Q 024316 242 IKGGDHMAMLSDP---QKLCDCLSQISLK 267 (269)
Q Consensus 242 i~~~gH~~~~e~p---~~~~~~l~~f~~~ 267 (269)
++++||+++.|++ +++.+.+.+|+++
T Consensus 244 ~~~~gH~~~~e~~~~~~~~~~~~~~~l~~ 272 (276)
T PHA02857 244 YEGAKHHLHKETDEVKKSVMKEIETWIFN 272 (276)
T ss_pred eCCCcccccCCchhHHHHHHHHHHHHHHH
Confidence 9999999999987 4677888888874
No 25
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.97 E-value=8.7e-30 Score=210.90 Aligned_cols=237 Identities=14% Similarity=0.185 Sum_probs=152.4
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
.++|||+||++.++..|..+++.|. .||+|+++|+||||.|+... ..++++++++++.++++.+ ..++++|+|||||
T Consensus 13 ~~~li~~hg~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~-~~~~~~~~~~~~~~~i~~~-~~~~v~liG~S~G 89 (251)
T TIGR02427 13 APVLVFINSLGTDLRMWDPVLPALT-PDFRVLRYDKRGHGLSDAPE-GPYSIEDLADDVLALLDHL-GIERAVFCGLSLG 89 (251)
T ss_pred CCeEEEEcCcccchhhHHHHHHHhh-cccEEEEecCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCceEEEEeCch
Confidence 4689999999999999999999996 58999999999999997654 3569999999999999998 4578999999999
Q ss_pred hHHHHHHhhhCCcccceeEEEeccCCCCCCCch-hhhccCccccccCCCCccccccccc-ccCCCCCCccccccchhHHH
Q 024316 89 GVTLALAADKFPHKISVAVFVTAFMPDTTHRPS-FVLEQVPYSEKMGKEDDSWLDTQFS-QCDASNPSHISMLFGREFLT 166 (269)
Q Consensus 89 G~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (269)
|+++..+|.++|++|+++|++++.......... ......... ........... .+.. .... ......+.+.
T Consensus 90 g~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 162 (251)
T TIGR02427 90 GLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAE-----GLAALADAVLERWFTP-GFRE-AHPARLDLYR 162 (251)
T ss_pred HHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhc-----cHHHHHHHHHHHHccc-cccc-CChHHHHHHH
Confidence 999999999999999999999864321110000 000000000 00000000000 0000 0000 0000000001
Q ss_pred HHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCC
Q 024316 167 IKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGD 246 (269)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~g 246 (269)
..+.. ............. ............++|+++++|++|.++|++..+.+.+.+++.++++++++|
T Consensus 163 ~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g 231 (251)
T TIGR02427 163 NMLVR-QPPDGYAGCCAAI----------RDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAG 231 (251)
T ss_pred HHHHh-cCHHHHHHHHHHH----------hcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCC
Confidence 11100 0110000000000 000000001123789999999999999999989898888988999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHH
Q 024316 247 HMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 247 H~~~~e~p~~~~~~l~~f~~ 266 (269)
|++++|+|+++++.|.+|+.
T Consensus 232 H~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 232 HIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred CcccccChHHHHHHHHHHhC
Confidence 99999999999999999873
No 26
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.97 E-value=3.8e-31 Score=215.58 Aligned_cols=227 Identities=22% Similarity=0.315 Sum_probs=145.8
Q ss_pred EEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccc-cccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH
Q 024316 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 12 ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~ 90 (269)
|||+||++.+++.|..+++.|+ .||+|+++|+||||.|+.... ..++++++++++.++++++ ..++++||||||||.
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvG~S~Gg~ 78 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL-GIKKVILVGHSMGGM 78 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT-TTSSEEEEEETHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccc-ccccccccccccccc
Confidence 7999999999999999999995 699999999999999987542 3579999999999999999 447999999999999
Q ss_pred HHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHHHHh
Q 024316 91 TLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIY 170 (269)
Q Consensus 91 i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
++..++.++|++|+++|++++...............+.... ..+........ . .. .....+......+.+.
T Consensus 79 ~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 79 IALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRL------LAWRSRSLRRL-A-SR-FFYRWFDGDEPEDLIR 149 (228)
T ss_dssp HHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHH------HHHHHHHHHHH-H-HH-HHHHHHTHHHHHHHHH
T ss_pred cccccccccccccccceeecccccccccccccccchhhhhh------hhccccccccc-c-cc-cccccccccccccccc
Confidence 99999999999999999999753311000000000010000 00000000000 0 00 0000000011111110
Q ss_pred cCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCCC
Q 024316 171 QLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAM 250 (269)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 250 (269)
. .........+.. .....+.. .....++|+++++|++|.+++.+.++.+.+..+++++++++++||+++
T Consensus 150 ~-----~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 150 S-----SRRALAEYLRSN-LWQADLSE-----ALPRIKVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLF 218 (228)
T ss_dssp H-----HHHHHHHHHHHH-HHHHHHHH-----HHHGSSSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHH
T ss_pred c-----cccccccccccc-cccccccc-----cccccCCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccH
Confidence 0 000000000000 00000000 011127899999999999999999999999899999999999999999
Q ss_pred CCCcHHHHHH
Q 024316 251 LSDPQKLCDC 260 (269)
Q Consensus 251 ~e~p~~~~~~ 260 (269)
+|+|++|+++
T Consensus 219 ~~~p~~~~~a 228 (228)
T PF12697_consen 219 LEQPDEVAEA 228 (228)
T ss_dssp HHSHHHHHHH
T ss_pred HHCHHHHhcC
Confidence 9999999874
No 27
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.97 E-value=2.4e-29 Score=219.16 Aligned_cols=240 Identities=18% Similarity=0.165 Sum_probs=145.2
Q ss_pred CceEEEecCCCCC-ccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCC-----CCcEEE
Q 024316 9 EKHFVLVHGVNHG-AWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPA-----EEKVIL 82 (269)
Q Consensus 9 g~~ivlvHG~~~~-~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~-----~~~vil 82 (269)
.++|||+||++.+ .+.|..+...|.+.||+|+++|+||||.|+.......+++.+++|+.++++.+.. ..+++|
T Consensus 59 ~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l 138 (330)
T PLN02298 59 RALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFL 138 (330)
T ss_pred ceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 3469999999865 4567888888988899999999999999976443346889999999999987621 247999
Q ss_pred EEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCC-CchhhhccCccccccCCCCcccccccccccCCCCCCccccccc
Q 024316 83 VGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTH-RPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFG 161 (269)
Q Consensus 83 VGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (269)
+||||||+++..++.++|++|++||++++....... ............. ..+... ... .+ ..........
T Consensus 139 ~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~-~~-~~~~~~~~~~ 209 (330)
T PLN02298 139 YGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPWPIPQILTFV------ARFLPT-LAI-VP-TADLLEKSVK 209 (330)
T ss_pred EEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCchHHHHHHHHH------HHHCCC-Ccc-cc-CCCccccccc
Confidence 999999999999998999999999999874321110 0000000000000 000000 000 00 0000000000
Q ss_pred hhHHHHHHhcCCCH-----HhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC-
Q 024316 162 REFLTIKIYQLCPP-----EDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP- 235 (269)
Q Consensus 162 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~- 235 (269)
... .+.+....+. ..........+.. +.+.. .....++|+|+|+|++|.++|++.++.+.+.++
T Consensus 210 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~l~~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~ 279 (330)
T PLN02298 210 VPA-KKIIAKRNPMRYNGKPRLGTVVELLRVT----DYLGK-----KLKDVSIPFIVLHGSADVVTDPDVSRALYEEAKS 279 (330)
T ss_pred CHH-HHHHHHhCccccCCCccHHHHHHHHHHH----HHHHH-----hhhhcCCCEEEEecCCCCCCCHHHHHHHHHHhcc
Confidence 000 0000000000 0000000000000 00000 112237999999999999999999999887764
Q ss_pred -CCeEEEEcCCCCCCCCCCcHH----HHHHHHHHHHh
Q 024316 236 -VNEVMEIKGGDHMAMLSDPQK----LCDCLSQISLK 267 (269)
Q Consensus 236 -~~~~~~i~~~gH~~~~e~p~~----~~~~l~~f~~~ 267 (269)
++++++++++||++++|+|+. +.+.|.+|+++
T Consensus 280 ~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~ 316 (330)
T PLN02298 280 EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNE 316 (330)
T ss_pred CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999975 55566777765
No 28
>PRK07581 hypothetical protein; Validated
Probab=99.97 E-value=1.1e-29 Score=222.10 Aligned_cols=252 Identities=12% Similarity=0.090 Sum_probs=142.5
Q ss_pred ceEEEecCCCCCccchHHHH---HHHHhCCCeEEEeCCCCCCCCCcccc--cccchHH-----hHHHHHH----HHHhCC
Q 024316 10 KHFVLVHGVNHGAWCWYKLK---ARLVAGGHRVTAVDLAASGINMKRIE--DVHTFHA-----YSEPLME----VLASLP 75 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~---~~L~~~g~~Via~Dl~G~G~S~~~~~--~~~~~~~-----~~~~l~~----~i~~l~ 75 (269)
++|||+||++.++..|..++ +.|...+|+||++|+||||.|+.+.. ..+++++ +++++.+ +++++
T Consensus 42 ~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l- 120 (339)
T PRK07581 42 NAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKF- 120 (339)
T ss_pred CEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHh-
Confidence 35666666666666676554 46755679999999999999975532 1345543 4566655 66778
Q ss_pred CCCc-EEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCC
Q 024316 76 AEEK-VILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPS 154 (269)
Q Consensus 76 ~~~~-vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
+.++ ++||||||||++++.+|.++|++|++||++++....... ...........+. ....|....... .+ ...
T Consensus 121 gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~-~~~~~~~~~~~l~---~~~~~~~~~~~~-~~-~~~ 194 (339)
T PRK07581 121 GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPH-NFVFLEGLKAALT---ADPAFNGGWYAE-PP-ERG 194 (339)
T ss_pred CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHH-HHHHHHHHHHHHH---hCCCCCCCCCCC-cH-HHH
Confidence 5678 589999999999999999999999999999865321110 0000000000000 000000000000 00 000
Q ss_pred -------ccccccchhHHHHHHhcCCC----HHhH-HHHHHhc---CCCcccc--c-----cc-ccc---ccC-CCCCCC
Q 024316 155 -------HISMLFGREFLTIKIYQLCP----PEDL-ELAKMLV---RPGSMFI--D-----NL-SKE---SKF-SDEGYG 207 (269)
Q Consensus 155 -------~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~---~~~~~~~--~-----~~-~~~---~~~-~~~~~~ 207 (269)
.....+.+.++....+.... .... ....... .+..... . .+ ... ... ......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I 274 (339)
T PRK07581 195 LRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSI 274 (339)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcC
Confidence 00000001111100000000 0000 0000000 0000000 0 00 000 000 011124
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcC-CCCCCCCCCcHHHHHHHHHHHHhh
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKG-GDHMAMLSDPQKLCDCLSQISLKY 268 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~~~e~p~~~~~~l~~f~~~~ 268 (269)
++|+|+|+|++|.++|++..+.+.+.+|+++++++++ +||++++|+|++++..|.+|+++|
T Consensus 275 ~~PtLvI~G~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 275 TAKTFVMPISTDLYFPPEDCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999998 999999999999999999999983
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.97 E-value=9.6e-29 Score=204.23 Aligned_cols=243 Identities=21% Similarity=0.204 Sum_probs=147.7
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccc-cccchHHhHHH-HHHHHHhCCCCCcEEEEEeC
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEP-LMEVLASLPAEEKVILVGHS 86 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-~~~~~~~~~~~-l~~~i~~l~~~~~vilVGHS 86 (269)
+++|||+||++.+++.|+.+++.|+ .||+|+++|+||||.|+.+.. ..+++++++++ +..+++.+ ..++++|+|||
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S 78 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQL-GIEPFFLVGYS 78 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHc-CCCeEEEEEec
Confidence 4799999999999999999999997 689999999999999976532 34688999998 77777877 45789999999
Q ss_pred hhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCcc-ccc--cC-CCCcccccccccccCCCCCCccccccch
Q 024316 87 LGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPY-SEK--MG-KEDDSWLDTQFSQCDASNPSHISMLFGR 162 (269)
Q Consensus 87 mGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (269)
|||.++..+|.++|++|++++++++... .............. ... .. .....+.......... .. ......
T Consensus 79 ~Gg~ia~~~a~~~~~~v~~lil~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~ 153 (251)
T TIGR03695 79 MGGRIALYYALQYPERVQGLILESGSPG-LATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLF-AS---QKNLPP 153 (251)
T ss_pred cHHHHHHHHHHhCchheeeeEEecCCCC-cCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCcee-ee---cccCCh
Confidence 9999999999999999999999986422 11100000000000 000 00 0000000000000000 00 000000
Q ss_pred hHHHHHHhc--CCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEE
Q 024316 163 EFLTIKIYQ--LCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVM 240 (269)
Q Consensus 163 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~ 240 (269)
......... ....... ...+...... ............++|+++|+|++|..++ +..+.+.+..+..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~~ 225 (251)
T TIGR03695 154 EQRQALRAKRLANNPEGL--AKMLRATGLG-----KQPSLWPKLQALTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTLV 225 (251)
T ss_pred HHhHHHHHhcccccchHH--HHHHHHhhhh-----cccchHHHhhCCCCceEEEeeCcchHHH-HHHHHHHhcCCCCcEE
Confidence 000000000 0000000 0000000000 0000000112247999999999998764 5667777788889999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 241 EIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 241 ~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
++|++||++++|+|+++++.|.+|++
T Consensus 226 ~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 226 IIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred EEcCCCCCcCccChHHHHHHHHHHhC
Confidence 99999999999999999999999973
No 30
>PRK10749 lysophospholipase L2; Provisional
Probab=99.96 E-value=5.2e-29 Score=217.04 Aligned_cols=243 Identities=15% Similarity=0.185 Sum_probs=149.2
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccc-----cccchHHhHHHHHHHHHhCC---CCCc
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-----DVHTFHAYSEPLMEVLASLP---AEEK 79 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-----~~~~~~~~~~~l~~~i~~l~---~~~~ 79 (269)
++++|||+||++.+...|..++..|.+.||+|+++|+||||.|++... ..++++++++++.++++.+. ...+
T Consensus 53 ~~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 132 (330)
T PRK10749 53 HDRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPGPYRK 132 (330)
T ss_pred CCcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcCCCCC
Confidence 356899999999999899999988988899999999999999975421 23589999999999998751 2368
Q ss_pred EEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccC---ccccc---cCC--CCcccccccccccCCC
Q 024316 80 VILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQV---PYSEK---MGK--EDDSWLDTQFSQCDAS 151 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~---~~~~~---~~~--~~~~~~~~~~~~~~~~ 151 (269)
++|+||||||.++..+|.++|++|+++|++++........+....... ..... ... ....|....+.
T Consensus 133 ~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 207 (330)
T PRK10749 133 RYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFA----- 207 (330)
T ss_pred eEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcC-----
Confidence 999999999999999998999999999999864221100010000000 00000 000 00000000000
Q ss_pred CCCccccccchhHH---HHHHhcCCCHH-----hHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCC
Q 024316 152 NPSHISMLFGREFL---TIKIYQLCPPE-----DLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLP 223 (269)
Q Consensus 152 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~ 223 (269)
.+ .....+... .+.. ...+.. ...+....... ...........++|+|+|+|++|.+++
T Consensus 208 ~~---~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~P~Lii~G~~D~vv~ 274 (330)
T PRK10749 208 IN---VLTHSRERYRRNLRFY-ADDPELRVGGPTYHWVRESILA---------GEQVLAGAGDITTPLLLLQAEEERVVD 274 (330)
T ss_pred CC---CCCCCHHHHHHHHHHH-HhCCCcccCCCcHHHHHHHHHH---------HHHHHhhccCCCCCEEEEEeCCCeeeC
Confidence 00 000011110 0111 101100 00000000000 000000112237899999999999999
Q ss_pred hHHHHHHHHhC-------CCCeEEEEcCCCCCCCCCCc---HHHHHHHHHHHHhh
Q 024316 224 KQFQHWMIQNY-------PVNEVMEIKGGDHMAMLSDP---QKLCDCLSQISLKY 268 (269)
Q Consensus 224 ~~~~~~~~~~~-------~~~~~~~i~~~gH~~~~e~p---~~~~~~l~~f~~~~ 268 (269)
++.++.+.+.+ ++++++++|++||+++.|++ +++.+.|.+|+++.
T Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 275 NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 99988887654 34579999999999999997 56778888888753
No 31
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.96 E-value=3.6e-29 Score=211.75 Aligned_cols=246 Identities=19% Similarity=0.188 Sum_probs=146.6
Q ss_pred CceEEEecCCCCCcc-chHHHHHHHHhCCCeEEEeCCCCCCCCCccccc--ccchHHhHHHHHHHHHhCCCCCcEEEEEe
Q 024316 9 EKHFVLVHGVNHGAW-CWYKLKARLVAGGHRVTAVDLAASGINMKRIED--VHTFHAYSEPLMEVLASLPAEEKVILVGH 85 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~--~~~~~~~~~~l~~~i~~l~~~~~vilVGH 85 (269)
+++|||+||++.++. .|..+...|.+.||+|+++|+||||.|+.+... .++++++++++.++++++ ..++++||||
T Consensus 25 ~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liG~ 103 (288)
T TIGR01250 25 KIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREKL-GLDKFYLLGH 103 (288)
T ss_pred CCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCcEEEEEe
Confidence 579999999865554 456666666655899999999999999865322 378999999999999998 4578999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHH
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFL 165 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (269)
||||.++..+|..+|++|+++|++++...... .............. .....+.. ........+ . .+ ...+
T Consensus 104 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~-~---~~-~~~~ 173 (288)
T TIGR01250 104 SWGGMLAQEYALKYGQHLKGLIISSMLDSAPE--YVKELNRLRKELPP--EVRAAIKR-CEASGDYDN-P---EY-QEAV 173 (288)
T ss_pred ehHHHHHHHHHHhCccccceeeEecccccchH--HHHHHHHHHhhcCh--hHHHHHHH-HHhccCcch-H---HH-HHHH
Confidence 99999999999999999999999986432111 00000000000000 00000000 000000000 0 00 0000
Q ss_pred HHHH----hc-CCCHHhHHHHH---------HhcCCCccccc-cccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHH
Q 024316 166 TIKI----YQ-LCPPEDLELAK---------MLVRPGSMFID-NLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWM 230 (269)
Q Consensus 166 ~~~~----~~-~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~ 230 (269)
.... .. ........... ........... .+............++|+++++|++|.+ +++..+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~ 252 (288)
T TIGR01250 174 EVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREM 252 (288)
T ss_pred HHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHH
Confidence 0000 00 00000000000 00000000000 0000000001123478999999999985 66778888
Q ss_pred HHhCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 231 IQNYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 231 ~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
.+.+++.++++++++||++++|+|+++++.|.+|++
T Consensus 253 ~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 253 QELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred HHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 888898999999999999999999999999999974
No 32
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.96 E-value=9.2e-29 Score=207.25 Aligned_cols=247 Identities=21% Similarity=0.274 Sum_probs=151.4
Q ss_pred CCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCccc---ccccchHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRI---EDVHTFHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~---~~~~~~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
.+..|||||||++.+...|-..++.|++ .++|+|+|+||+|.|.++. +.......+++.+.+.-.+. +.++.+||
T Consensus 88 ~~~~plVliHGyGAg~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~-~L~Kmilv 165 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAGLGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKM-GLEKMILV 165 (365)
T ss_pred cCCCcEEEEeccchhHHHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHc-CCcceeEe
Confidence 3467999999999999999999999977 7999999999999998763 22223456777777776677 56899999
Q ss_pred EeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCccccccc------cc------ccCCC
Q 024316 84 GHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQ------FS------QCDAS 151 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~ 151 (269)
||||||.+++.+|.++|++|.+|||+++.....- +....+ +.+ +...|+... +. ..++.
T Consensus 166 GHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~--~~~~~~-~~~------~~~~w~~~~~~~~~~~nPl~~LR~~Gp~ 236 (365)
T KOG4409|consen 166 GHSFGGYLAAKYALKYPERVEKLILVSPWGFPEK--PDSEPE-FTK------PPPEWYKALFLVATNFNPLALLRLMGPL 236 (365)
T ss_pred eccchHHHHHHHHHhChHhhceEEEecccccccC--CCcchh-hcC------CChHHHhhhhhhhhcCCHHHHHHhcccc
Confidence 9999999999999999999999999997532110 000000 000 001111000 00 00000
Q ss_pred C-----C--C----ccccccchhHHHHHHhcC--CCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCC
Q 024316 152 N-----P--S----HISMLFGREFLTIKIYQL--CPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEE 218 (269)
Q Consensus 152 ~-----~--~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~ 218 (269)
. + + .....+..+++.+++|.. ..+..-.....++.+..+....|.++.. .--..+|+++|.|++
T Consensus 237 Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~---~l~~~~pv~fiyG~~ 313 (365)
T KOG4409|consen 237 GPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLR---ELKKDVPVTFIYGDR 313 (365)
T ss_pred chHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHH---hhccCCCEEEEecCc
Confidence 0 0 0 000011122223333321 1111111122233332222222211111 111259999999998
Q ss_pred CCCCChHHHHHHHHh--CCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHhh
Q 024316 219 DIGLPKQFQHWMIQN--YPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLKY 268 (269)
Q Consensus 219 D~~~~~~~~~~~~~~--~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~~ 268 (269)
|=+ ......++.+. ...++.++++++||.+++++|+.|++.|..+++++
T Consensus 314 dWm-D~~~g~~~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 314 DWM-DKNAGLEVTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred ccc-cchhHHHHHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 854 55455444442 34578899999999999999999999999998764
No 33
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.96 E-value=2.8e-27 Score=210.87 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=86.1
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccc----hHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHT----FHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~----~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
++++|||+||++.+...|..+++.|.+ +|+|+++|+||||.|+++.....+ .+.+++++.++++.+ +.++++|+
T Consensus 104 ~~p~vvllHG~~~~~~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~l-~~~~~~lv 181 (402)
T PLN02894 104 DAPTLVMVHGYGASQGFFFRNFDALAS-RFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAK-NLSNFILL 181 (402)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHHh-CCEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHc-CCCCeEEE
Confidence 358999999999999999999999976 699999999999999865321111 124667788888887 45799999
Q ss_pred EeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 84 GHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
||||||.++..+|.++|++|++||++++.
T Consensus 182 GhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 182 GHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred EECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 99999999999999999999999999864
No 34
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.96 E-value=3.3e-28 Score=213.74 Aligned_cols=252 Identities=14% Similarity=0.124 Sum_probs=145.6
Q ss_pred CceEEEecCCCCCc--c---------chHHHHH---HHHhCCCeEEEeCCCC--CCCCCcc----c-------ccccchH
Q 024316 9 EKHFVLVHGVNHGA--W---------CWYKLKA---RLVAGGHRVTAVDLAA--SGINMKR----I-------EDVHTFH 61 (269)
Q Consensus 9 g~~ivlvHG~~~~~--~---------~w~~~~~---~L~~~g~~Via~Dl~G--~G~S~~~----~-------~~~~~~~ 61 (269)
+++|||+||++.++ . .|..++. .|...+|+||++|+|| ||.|... . ...++++
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIR 110 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHH
Confidence 57999999999876 2 4787762 4545689999999999 5655421 1 1147899
Q ss_pred HhHHHHHHHHHhCCCCCc-EEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCccc
Q 024316 62 AYSEPLMEVLASLPAEEK-VILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSW 140 (269)
Q Consensus 62 ~~~~~l~~~i~~l~~~~~-vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (269)
++++++.++++++ +.++ ++||||||||+++..+|.++|++|++||++++........... .......+. ....+
T Consensus 111 ~~~~~~~~~~~~l-~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~ 185 (351)
T TIGR01392 111 DDVKAQKLLLDHL-GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWCIAF-NEVQRQAIL---ADPNW 185 (351)
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHHHHH-HHHHHHHHH---hCCCC
Confidence 9999999999999 5577 9999999999999999999999999999999753211110000 000000000 00000
Q ss_pred ccccccccC-CCCC-Ccc------ccccchhHHHHHHhcCC-----C---------HHhHH--HHHHhcC---CCccc--
Q 024316 141 LDTQFSQCD-ASNP-SHI------SMLFGREFLTIKIYQLC-----P---------PEDLE--LAKMLVR---PGSMF-- 191 (269)
Q Consensus 141 ~~~~~~~~~-~~~~-~~~------~~~~~~~~~~~~~~~~~-----~---------~~~~~--~~~~~~~---~~~~~-- 191 (269)
....+.... + .. ... ......+.+...+.... + .+... ....+.. +....
T Consensus 186 ~~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 264 (351)
T TIGR01392 186 NDGDYYEDGQP-DRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQGDKFVDRFDANSYLYL 264 (351)
T ss_pred CCCCCCCCCCh-hhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHHHHHHHhhcCcchHHHH
Confidence 000000000 0 00 000 00000000111111000 0 00000 0000000 00000
Q ss_pred cccccccc------c-CCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEE-----EEcCCCCCCCCCCcHHHHH
Q 024316 192 IDNLSKES------K-FSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVM-----EIKGGDHMAMLSDPQKLCD 259 (269)
Q Consensus 192 ~~~~~~~~------~-~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-----~i~~~gH~~~~e~p~~~~~ 259 (269)
...+.... . .......++|+|+|+|++|.++|++..+.+++.+++++++ +++++||++++|+|++|++
T Consensus 265 ~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~ 344 (351)
T TIGR01392 265 TRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEE 344 (351)
T ss_pred HHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHH
Confidence 00000000 0 0011223789999999999999999999999999888765 5678999999999999999
Q ss_pred HHHHHHH
Q 024316 260 CLSQISL 266 (269)
Q Consensus 260 ~l~~f~~ 266 (269)
.|.+|++
T Consensus 345 ~l~~FL~ 351 (351)
T TIGR01392 345 LIRGFLR 351 (351)
T ss_pred HHHHHhC
Confidence 9999974
No 35
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.96 E-value=9.7e-28 Score=212.66 Aligned_cols=253 Identities=12% Similarity=0.121 Sum_probs=146.2
Q ss_pred CceEEEecCCCCCccc-------------hHHHHH---HHHhCCCeEEEeCCCCC-CCCCccc----c---------ccc
Q 024316 9 EKHFVLVHGVNHGAWC-------------WYKLKA---RLVAGGHRVTAVDLAAS-GINMKRI----E---------DVH 58 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~-------------w~~~~~---~L~~~g~~Via~Dl~G~-G~S~~~~----~---------~~~ 58 (269)
+++|||+||++.+... |..++. .|...+|+||++|++|+ |.|..+. + ..+
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 5799999999998874 777762 34245899999999993 4443211 0 147
Q ss_pred chHHhHHHHHHHHHhCCCCCc-EEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchh---hhccCcccc-cc
Q 024316 59 TFHAYSEPLMEVLASLPAEEK-VILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSF---VLEQVPYSE-KM 133 (269)
Q Consensus 59 ~~~~~~~~l~~~i~~l~~~~~-vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~---~~~~~~~~~-~~ 133 (269)
+++++++++.++++++ +.++ ++||||||||+++..+|.++|++|++||++++........... ......... ..
T Consensus 128 ~~~~~~~~~~~~l~~l-~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 206 (379)
T PRK00175 128 TIRDWVRAQARLLDAL-GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADPDWH 206 (379)
T ss_pred CHHHHHHHHHHHHHHh-CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999 4567 5999999999999999999999999999998754321110000 000000000 00
Q ss_pred --CCC---Ccc--------c------ccc-cc-cccC--CCCCCc-c--ccccc-hhHHH---HHHhcCCCHHhHHH-HH
Q 024316 134 --GKE---DDS--------W------LDT-QF-SQCD--ASNPSH-I--SMLFG-REFLT---IKIYQLCPPEDLEL-AK 182 (269)
Q Consensus 134 --~~~---~~~--------~------~~~-~~-~~~~--~~~~~~-~--~~~~~-~~~~~---~~~~~~~~~~~~~~-~~ 182 (269)
.+. ... + ... .+ ..+. .....+ . ..... ..+.. +............. ..
T Consensus 207 ~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~ 286 (379)
T PRK00175 207 GGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLYLTR 286 (379)
T ss_pred CCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHHHHH
Confidence 000 000 0 000 00 0000 000000 0 00000 00000 00000011111110 00
Q ss_pred HhcCCCccc-c-ccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCC----eEEEEc-CCCCCCCCCCcH
Q 024316 183 MLVRPGSMF-I-DNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVN----EVMEIK-GGDHMAMLSDPQ 255 (269)
Q Consensus 183 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~----~~~~i~-~~gH~~~~e~p~ 255 (269)
.+....... . .++.. .....++|+|+|+|++|.++|++..+.+++.++++ ++++++ ++||++++|+|+
T Consensus 287 ~~~~~d~~~~~~~d~~~-----~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~ 361 (379)
T PRK00175 287 ALDYFDPARGRGGDLAA-----ALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDP 361 (379)
T ss_pred HHHhccccCCCCCCHHH-----HHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHH
Confidence 100000000 0 00000 11224789999999999999999999999988876 677674 899999999999
Q ss_pred HHHHHHHHHHHh
Q 024316 256 KLCDCLSQISLK 267 (269)
Q Consensus 256 ~~~~~l~~f~~~ 267 (269)
+|++.|.+|+++
T Consensus 362 ~~~~~L~~FL~~ 373 (379)
T PRK00175 362 RYGRLVRAFLER 373 (379)
T ss_pred HHHHHHHHHHHh
Confidence 999999999975
No 36
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.95 E-value=3.2e-27 Score=208.63 Aligned_cols=237 Identities=20% Similarity=0.256 Sum_probs=149.3
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
++++|||+||++.+...|..+.+.|.+ +|+|+++|+||||.|+... ...+++++++++.++++.+ +..+++||||||
T Consensus 130 ~~~~vl~~HG~~~~~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~lvG~S~ 206 (371)
T PRK14875 130 DGTPVVLIHGFGGDLNNWLFNHAALAA-GRPVIALDLPGHGASSKAV-GAGSLDELAAAVLAFLDAL-GIERAHLVGHSM 206 (371)
T ss_pred CCCeEEEECCCCCccchHHHHHHHHhc-CCEEEEEcCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhc-CCccEEEEeech
Confidence 468999999999999999999999965 5999999999999996543 3468999999999999998 446899999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHH
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTI 167 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (269)
||.++..+|.++|+++.++|++++......... .....+..... ......++...+ .. ...+...+...
T Consensus 207 Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~------~~---~~~~~~~~~~~ 275 (371)
T PRK14875 207 GGAVALRLAARAPQRVASLTLIAPAGLGPEING-DYIDGFVAAES-RRELKPVLELLF------AD---PALVTRQMVED 275 (371)
T ss_pred HHHHHHHHHHhCchheeEEEEECcCCcCcccch-hHHHHhhcccc-hhHHHHHHHHHh------cC---hhhCCHHHHHH
Confidence 999999999899999999999986422111000 00000000000 000001111000 00 00011111111
Q ss_pred HHh-cC-CC-HHhHH-HHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEc
Q 024316 168 KIY-QL-CP-PEDLE-LAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIK 243 (269)
Q Consensus 168 ~~~-~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~ 243 (269)
... .. .. ..... ............ ..+.. .....++|+++++|++|.++|++..+.+ .+..++++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~l~~i~~Pvlii~g~~D~~vp~~~~~~l---~~~~~~~~~~ 346 (371)
T PRK14875 276 LLKYKRLDGVDDALRALADALFAGGRQR-VDLRD-----RLASLAIPVLVIWGEQDRIIPAAHAQGL---PDGVAVHVLP 346 (371)
T ss_pred HHHHhccccHHHHHHHHHHHhccCcccc-hhHHH-----HHhcCCCCEEEEEECCCCccCHHHHhhc---cCCCeEEEeC
Confidence 111 00 00 00000 001111100000 00000 0112378999999999999998776543 2457899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 244 GGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 244 ~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
++||++++|+|+++++.|.+|+++
T Consensus 347 ~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 347 GAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred CCCCChhhhCHHHHHHHHHHHhcc
Confidence 999999999999999999999864
No 37
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.95 E-value=1e-26 Score=206.13 Aligned_cols=238 Identities=16% Similarity=0.149 Sum_probs=147.4
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC---CCCcEEEEEe
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP---AEEKVILVGH 85 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~---~~~~vilVGH 85 (269)
.++|||+||++.++..|..+++.|.+.||+|+++|+||||.|+......++++.+++|+.++++.+. ...+++|+||
T Consensus 136 ~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvGh 215 (395)
T PLN02652 136 RGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSENPGVPCFLFGH 215 (395)
T ss_pred ceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3589999999999999999999998889999999999999998754344688899999998888762 1247999999
Q ss_pred ChhhHHHHHHhhhCC---cccceeEEEeccCCCCCCCch-hhhccCccccccCCCCcccccccccccCCCCCCccccccc
Q 024316 86 SLGGVTLALAADKFP---HKISVAVFVTAFMPDTTHRPS-FVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFG 161 (269)
Q Consensus 86 SmGG~i~~~~a~~~p---~~v~~lvli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (269)
||||.++..++ .+| ++|+++|+.++........+. .......... ...+. +.. . .........+
T Consensus 216 SmGG~ial~~a-~~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~~-----~p~~~---~~~--~-~~~~~~~s~~ 283 (395)
T PLN02652 216 STGGAVVLKAA-SYPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSLV-----APRFQ---FKG--A-NKRGIPVSRD 283 (395)
T ss_pred CHHHHHHHHHH-hccCcccccceEEEECcccccccchHHHHHHHHHHHHh-----CCCCc---ccC--c-ccccCCcCCC
Confidence 99999888766 455 489999998864321111110 0000000000 00000 000 0 0000000001
Q ss_pred hhHHHHHHhcCCC---HHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC--C
Q 024316 162 REFLTIKIYQLCP---PEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP--V 236 (269)
Q Consensus 162 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~ 236 (269)
+............ ...........+.. ..+.. .....++|+|+++|++|.++|++.++.+.+..+ .
T Consensus 284 ~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~----~~l~~-----~L~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~ 354 (395)
T PLN02652 284 PAALLAKYSDPLVYTGPIRVRTGHEILRIS----SYLTR-----NFKSVTVPFMVLHGTADRVTDPLASQDLYNEAASRH 354 (395)
T ss_pred HHHHHHHhcCCCcccCCchHHHHHHHHHHH----HHHHh-----hcccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 1111010000000 00000000000000 00000 111237999999999999999999998877754 4
Q ss_pred CeEEEEcCCCCCCCCC-CcHHHHHHHHHHHHh
Q 024316 237 NEVMEIKGGDHMAMLS-DPQKLCDCLSQISLK 267 (269)
Q Consensus 237 ~~~~~i~~~gH~~~~e-~p~~~~~~l~~f~~~ 267 (269)
.+++++|+++|++++| +++++++.+.+|++.
T Consensus 355 k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~ 386 (395)
T PLN02652 355 KDIKLYDGFLHDLLFEPEREEVGRDIIDWMEK 386 (395)
T ss_pred ceEEEECCCeEEeccCCCHHHHHHHHHHHHHH
Confidence 6799999999999888 789999999999974
No 38
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.95 E-value=3.1e-26 Score=195.88 Aligned_cols=239 Identities=18% Similarity=0.170 Sum_probs=151.6
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCC-cccccccchHHhHHHHHHHHHhCC---CCCcEEEEEe
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINM-KRIEDVHTFHAYSEPLMEVLASLP---AEEKVILVGH 85 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~-~~~~~~~~~~~~~~~l~~~i~~l~---~~~~vilVGH 85 (269)
.+||++||.+.++..|.+++..|.+.||.|+++|+||||.|. .......++++|.+++.++++... ...+++|+||
T Consensus 35 g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gH 114 (298)
T COG2267 35 GVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGH 114 (298)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEe
Confidence 689999999999999999999999999999999999999997 444455679999999999999763 2479999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEeccCCCCC-CCchhhhc---cCccccccCCCCcccccccccccCCCCCCccccc-c
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVTAFMPDTT-HRPSFVLE---QVPYSEKMGKEDDSWLDTQFSQCDASNPSHISML-F 160 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 160 (269)
||||.|+..++.+++.+|+++|+.++...... ........ ....++.+...... . . . .+...... -
T Consensus 115 SmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~-~-----~--~~~~~~~~sr 185 (298)
T COG2267 115 SMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLLGRIRPKLPVDS-N-L-----L--EGVLTDDLSR 185 (298)
T ss_pred CcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhcccccccccccccCc-c-c-----c--cCcCcchhhc
Confidence 99999999999999999999999987543221 00000000 01111000000000 0 0 0 00000000 1
Q ss_pred chhHHHHHHhcCCCHH-----hHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCC-hHHHHHHHHhC
Q 024316 161 GREFLTIKIYQLCPPE-----DLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLP-KQFQHWMIQNY 234 (269)
Q Consensus 161 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~ 234 (269)
++... ..|...+.- -..+........ ...........++|+|+++|++|.+++ .+.+.++.++.
T Consensus 186 ~~~~~--~~~~~dP~~~~~~~~~~w~~~~~~a~--------~~~~~~~~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~ 255 (298)
T COG2267 186 DPAEV--AAYEADPLIGVGGPVSRWVDLALLAG--------RVPALRDAPAIALPVLLLQGGDDRVVDNVEGLARFFERA 255 (298)
T ss_pred CHHHH--HHHhcCCccccCCccHHHHHHHHHhh--------cccchhccccccCCEEEEecCCCccccCcHHHHHHHHhc
Confidence 11111 112111110 001111111000 000111123348999999999999999 67776665554
Q ss_pred --CCCeEEEEcCCCCCCCCCCcH---HHHHHHHHHHHh
Q 024316 235 --PVNEVMEIKGGDHMAMLSDPQ---KLCDCLSQISLK 267 (269)
Q Consensus 235 --~~~~~~~i~~~gH~~~~e~p~---~~~~~l~~f~~~ 267 (269)
++.++++++|+.|.++.|.+. ++.+.+.+|+.+
T Consensus 256 ~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~ 293 (298)
T COG2267 256 GSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAE 293 (298)
T ss_pred CCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHh
Confidence 456799999999999999774 666777777765
No 39
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.94 E-value=1.8e-26 Score=234.03 Aligned_cols=240 Identities=17% Similarity=0.183 Sum_probs=148.0
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCccc-------ccccchHHhHHHHHHHHHhCCCCCcEE
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRI-------EDVHTFHAYSEPLMEVLASLPAEEKVI 81 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~l~~~~~vi 81 (269)
+++|||+||++.++..|..+++.|.+ +|+|+++|+||||.|+... ...++++++++++.++++++ ..++++
T Consensus 1371 ~~~vVllHG~~~s~~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l-~~~~v~ 1448 (1655)
T PLN02980 1371 GSVVLFLHGFLGTGEDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHI-TPGKVT 1448 (1655)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHh-CCCCEE
Confidence 67999999999999999999999965 6999999999999997532 12468999999999999998 557999
Q ss_pred EEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccc----cccccCCCCCCccc
Q 024316 82 LVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDT----QFSQCDASNPSHIS 157 (269)
Q Consensus 82 lVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 157 (269)
||||||||.++..+|.++|++|+++|++++... ............... .....+.. .+..... ......
T Consensus 1449 LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~-~~~~~~~~~~~~~~~-----~~~~~l~~~g~~~~~~~~~-~~~~~~ 1521 (1655)
T PLN02980 1449 LVGYSMGARIALYMALRFSDKIEGAVIISGSPG-LKDEVARKIRSAKDD-----SRARMLIDHGLEIFLENWY-SGELWK 1521 (1655)
T ss_pred EEEECHHHHHHHHHHHhChHhhCEEEEECCCCc-cCchHHHHHHhhhhh-----HHHHHHHhhhHHHHHHHhc-cHHHhh
Confidence 999999999999999999999999999986421 111000000000000 00000000 0000000 000000
Q ss_pred cc-cchh---HHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccC-CCCCCCCccEEEEEeCCCCCCChHHHHHHHH
Q 024316 158 ML-FGRE---FLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKF-SDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQ 232 (269)
Q Consensus 158 ~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~ 232 (269)
.. ..+. .+...+.. ................ ..... ......++|+|+|+|++|.+++ +.++++.+
T Consensus 1522 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--------~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~ 1591 (1655)
T PLN02980 1522 SLRNHPHFNKIVASRLLH-KDVPSLAKLLSDLSIG--------RQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYR 1591 (1655)
T ss_pred hhccCHHHHHHHHHHHhc-CCHHHHHHHHHHhhhc--------ccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHH
Confidence 00 0000 00000000 0000000000000000 00000 0112237899999999999775 55666766
Q ss_pred hCCC------------CeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 233 NYPV------------NEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 233 ~~~~------------~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
.+++ +++++++++||++++|+|+++++.|.+|+++
T Consensus 1592 ~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~ 1638 (1655)
T PLN02980 1592 EIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTR 1638 (1655)
T ss_pred HccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHh
Confidence 6554 4789999999999999999999999999975
No 40
>PRK05855 short chain dehydrogenase; Validated
Probab=99.94 E-value=1.6e-26 Score=215.44 Aligned_cols=253 Identities=17% Similarity=0.135 Sum_probs=145.0
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCccc-ccccchHHhHHHHHHHHHhCCCCCcEEEEEeC
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRI-EDVHTFHAYSEPLMEVLASLPAEEKVILVGHS 86 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~-~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHS 86 (269)
++++|||+||++.+++.|+++++.| +.+|+|+++|+||||.|+... ...++++++++++.+++++++..++++|||||
T Consensus 24 ~~~~ivllHG~~~~~~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~~~~~~~lvGhS 102 (582)
T PRK05855 24 DRPTVVLVHGYPDNHEVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPKRTAAYTLARLADDFAAVIDAVSPDRPVHLLAHD 102 (582)
T ss_pred CCCeEEEEcCCCchHHHHHHHHHHh-hcceEEEEecCCCCCCCCCCCcccccCHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 3689999999999999999999999 458999999999999998643 23579999999999999998543469999999
Q ss_pred hhhHHHHHHhhh--CCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccc----ccccc-ccC-CCCCCcccc
Q 024316 87 LGGVTLALAADK--FPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWL----DTQFS-QCD-ASNPSHISM 158 (269)
Q Consensus 87 mGG~i~~~~a~~--~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~-~~~~~~~~~ 158 (269)
|||+++..++.. .++++..++.+++..... ............. +. ...... ..... ... + .......
T Consensus 103 ~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 177 (582)
T PRK05855 103 WGSIQGWEAVTRPRAAGRIASFTSVSGPSLDH--VGFWLRSGLRRPT-PR-RLARALGQLLRSWYIYLFHLP-VLPELLW 177 (582)
T ss_pred hHHHHHHHHHhCccchhhhhhheeccCCchHH--HHHHHhhcccccc-hh-hhhHHHHHHhhhHHHHHHhCC-CCcHHHh
Confidence 999988776644 345555555554321100 0000000000000 00 000000 00000 000 0 0000000
Q ss_pred -ccchhHHHHHHh--cCCCHHhHHHHHHh---cCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHH
Q 024316 159 -LFGREFLTIKIY--QLCPPEDLELAKML---VRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQ 232 (269)
Q Consensus 159 -~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~ 232 (269)
......+.+.+. .............. ......+..............+.++|+++|+|++|.++|++.++.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~ 257 (582)
T PRK05855 178 RLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYTDVPVQLIVPTGDPYVRPALYDDLSR 257 (582)
T ss_pred ccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCccCceEEEEeCCCcccCHHHhccccc
Confidence 000000111000 00000000000000 000000000000000000122358999999999999999999988888
Q ss_pred hCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 233 NYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 233 ~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
..++.++++++ +||++++|+|+++++.|.+|+.+
T Consensus 258 ~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~ 291 (582)
T PRK05855 258 WVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDA 291 (582)
T ss_pred cCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHh
Confidence 88888888887 89999999999999999999976
No 41
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.94 E-value=8.5e-26 Score=194.87 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=85.9
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccc-cccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
++||||+||++.++..| .+...+...+|+||++|+||||.|+.+.. ..++++++++++..+++.+ +.+++++|||||
T Consensus 27 ~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l-~~~~~~lvG~S~ 104 (306)
T TIGR01249 27 GKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVADIEKLREKL-GIKNWLVFGGSW 104 (306)
T ss_pred CCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc-CCCCEEEEEECH
Confidence 67999999987766544 44445545689999999999999986432 2467889999999999998 557899999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccC
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
||.++..++.++|++|+++|++++..
T Consensus 105 GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 105 GSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred HHHHHHHHHHHChHhhhhheeecccc
Confidence 99999999999999999999998754
No 42
>PLN02511 hydrolase
Probab=99.92 E-value=4.2e-25 Score=196.14 Aligned_cols=244 Identities=14% Similarity=0.091 Sum_probs=137.0
Q ss_pred CceEEEecCCCCCccc-h-HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC---CCCcEEEE
Q 024316 9 EKHFVLVHGVNHGAWC-W-YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP---AEEKVILV 83 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~-w-~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~---~~~~vilV 83 (269)
+++|||+||+..++.. | ..++..+.+.||+|+++|+||||.|+...... ....+++|+.++++.+. ...++++|
T Consensus 100 ~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~~-~~~~~~~Dl~~~i~~l~~~~~~~~~~lv 178 (388)
T PLN02511 100 APVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTTPQF-YSASFTGDLRQVVDHVAGRYPSANLYAA 178 (388)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCcCE-EcCCchHHHHHHHHHHHHHCCCCCEEEE
Confidence 5689999999766653 5 55666666789999999999999997543222 23456667777776652 12589999
Q ss_pred EeChhhHHHHHHhhhCCcc--cceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCC----ccc
Q 024316 84 GHSLGGVTLALAADKFPHK--ISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPS----HIS 157 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~p~~--v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 157 (269)
||||||.++..++.++|++ |.++|+++++..... ........+ ... ....+...+..... ... ...
T Consensus 179 G~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~-~~~~~~~~~-~~~-----y~~~~~~~l~~~~~-~~~~~~~~~~ 250 (388)
T PLN02511 179 GWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVI-ADEDFHKGF-NNV-----YDKALAKALRKIFA-KHALLFEGLG 250 (388)
T ss_pred EechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHH-HHHHHhccH-HHH-----HHHHHHHHHHHHHH-HHHHHHhhCC
Confidence 9999999999998888887 888888865321000 000000000 000 00000000000000 000 000
Q ss_pred cccchhHHHHHHhcCCCHHhHHHHHHhcCCCcccc--cc-ccccccCCCCCCCCccEEEEEeCCCCCCChHHH-HHHHHh
Q 024316 158 MLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFI--DN-LSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQ-HWMIQN 233 (269)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~-~~~~~~ 233 (269)
..++.... .......++ ...+..+...+. .. +............++|+|+|+|++|.++|++.. +..++.
T Consensus 251 ~~~~~~~~----~~~~~~~~f--d~~~t~~~~gf~~~~~yy~~~s~~~~L~~I~vPtLiI~g~dDpi~p~~~~~~~~~~~ 324 (388)
T PLN02511 251 GEYNIPLV----ANAKTVRDF--DDGLTRVSFGFKSVDAYYSNSSSSDSIKHVRVPLLCIQAANDPIAPARGIPREDIKA 324 (388)
T ss_pred CccCHHHH----HhCCCHHHH--HHhhhhhcCCCCCHHHHHHHcCchhhhccCCCCeEEEEcCCCCcCCcccCcHhHHhc
Confidence 00000000 000000000 000000000000 00 000000111223479999999999999998765 456777
Q ss_pred CCCCeEEEEcCCCCCCCCCCcHH------HHHHHHHHHHh
Q 024316 234 YPVNEVMEIKGGDHMAMLSDPQK------LCDCLSQISLK 267 (269)
Q Consensus 234 ~~~~~~~~i~~~gH~~~~e~p~~------~~~~l~~f~~~ 267 (269)
++++++++++++||++++|+|+. +++.|.+|++.
T Consensus 325 ~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 325 NPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred CCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHH
Confidence 89999999999999999999976 47888888864
No 43
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.92 E-value=4e-24 Score=186.25 Aligned_cols=237 Identities=11% Similarity=0.107 Sum_probs=140.4
Q ss_pred CceEEEecCCCCCccc----------------------h----HHHHHHHHhCCCeEEEeCCCCCCCCCcc---cccccc
Q 024316 9 EKHFVLVHGVNHGAWC----------------------W----YKLKARLVAGGHRVTAVDLAASGINMKR---IEDVHT 59 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~----------------------w----~~~~~~L~~~g~~Via~Dl~G~G~S~~~---~~~~~~ 59 (269)
..+||++||++.++.. | ..+++.|.+.||+|+++|+||||.|+.. .....+
T Consensus 21 kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~rGHG~S~~~~~~~g~~~~ 100 (332)
T TIGR01607 21 IGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQGHGESDGLQNLRGHINC 100 (332)
T ss_pred eEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecccccCCCccccccccchhh
Confidence 3599999999988851 1 4689999999999999999999998753 222348
Q ss_pred hHHhHHHHHHHHHhCC-----------------------CCCcEEEEEeChhhHHHHHHhhhCCc--------ccceeEE
Q 024316 60 FHAYSEPLMEVLASLP-----------------------AEEKVILVGHSLGGVTLALAADKFPH--------KISVAVF 108 (269)
Q Consensus 60 ~~~~~~~l~~~i~~l~-----------------------~~~~vilVGHSmGG~i~~~~a~~~p~--------~v~~lvl 108 (269)
++++++|+.++++... ...|++|+||||||.++..++..+++ .++++|+
T Consensus 101 ~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~ 180 (332)
T TIGR01607 101 FDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLGKSNENNDKLNIKGCIS 180 (332)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhccccccccccccceEEE
Confidence 9999999999998641 13589999999999998888765442 5889988
Q ss_pred EeccCCC-C-CCC----chhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHHHHhcCCC-----HHh
Q 024316 109 VTAFMPD-T-THR----PSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCP-----PED 177 (269)
Q Consensus 109 i~~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 177 (269)
+++.... . +.. .........+.. ..+. ..+.. ... .....++... +. +..++ ...
T Consensus 181 ~s~~~~i~~~~~~~~~~~~~~~~~l~~~~------~~~~-p~~~~----~~~-~~~~~~~~~~-~~-~~~Dp~~~~~~~s 246 (332)
T TIGR01607 181 LSGMISIKSVGSDDSFKFKYFYLPVMNFM------SRVF-PTFRI----SKK-IRYEKSPYVN-DI-IKFDKFRYDGGIT 246 (332)
T ss_pred eccceEEecccCCCcchhhhhHHHHHHHH------HHHC-Ccccc----cCc-cccccChhhh-hH-HhcCccccCCccc
Confidence 8764210 0 000 000000000000 0000 00000 000 0000000000 00 00000 000
Q ss_pred HHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhC--CCCeEEEEcCCCCCCCCCC-c
Q 024316 178 LELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY--PVNEVMEIKGGDHMAMLSD-P 254 (269)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e~-p 254 (269)
..+...+..... .+... . .....++|+++|+|++|.+++++.++.+.++. +..+++++++++|.++.|. +
T Consensus 247 ~~~~~~l~~~~~----~~~~~--~-~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~ 319 (332)
T TIGR01607 247 FNLASELIKATD----TLDCD--I-DYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVITIEPGN 319 (332)
T ss_pred HHHHHHHHHHHH----HHHhh--H-hhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCccCCCH
Confidence 011111110000 00000 0 00012689999999999999999998887664 4678899999999999996 5
Q ss_pred HHHHHHHHHHHH
Q 024316 255 QKLCDCLSQISL 266 (269)
Q Consensus 255 ~~~~~~l~~f~~ 266 (269)
+++.+.|.+|++
T Consensus 320 ~~v~~~i~~wL~ 331 (332)
T TIGR01607 320 EEVLKKIIEWIS 331 (332)
T ss_pred HHHHHHHHHHhh
Confidence 889999999985
No 44
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=181.88 Aligned_cols=237 Identities=20% Similarity=0.241 Sum_probs=152.2
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHh-CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC---CCCcEEEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVA-GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP---AEEKVILV 83 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~-~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~---~~~~vilV 83 (269)
..+|++++||+..+...|+.+...|+. .+-+|+++|+|-||.|+... .++.+++++|+..+|+..+ ...+++|+
T Consensus 51 ~~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~--~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~ 128 (315)
T KOG2382|consen 51 RAPPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKIT--VHNYEAMAEDVKLFIDGVGGSTRLDPVVLL 128 (315)
T ss_pred CCCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCcccc--ccCHHHHHHHHHHHHHHcccccccCCceec
Confidence 378999999999999999999999843 35699999999999998764 3578999999999999874 24689999
Q ss_pred EeChhh-HHHHHHhhhCCcccceeEEEeccCCCC-CCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccc
Q 024316 84 GHSLGG-VTLALAADKFPHKISVAVFVTAFMPDT-THRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFG 161 (269)
Q Consensus 84 GHSmGG-~i~~~~a~~~p~~v~~lvli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (269)
|||||| -++...+...|+++.++|+++.. |.. +.......+ ..... ...+. .. . .. -+
T Consensus 129 GHsmGG~~~~m~~t~~~p~~~~rliv~D~s-P~~~~~~~~e~~e-~i~~m-------~~~d~--~~-------~-~~-~~ 188 (315)
T KOG2382|consen 129 GHSMGGVKVAMAETLKKPDLIERLIVEDIS-PGGVGRSYGEYRE-LIKAM-------IQLDL--SI-------G-VS-RG 188 (315)
T ss_pred ccCcchHHHHHHHHHhcCcccceeEEEecC-CccCCcccchHHH-HHHHH-------Hhccc--cc-------c-cc-cc
Confidence 999999 34555567889999999999853 321 111111100 00000 00000 00 0 00 00
Q ss_pred hhHHHHHHhcCCCHHh-HHHHHHhcC--CC-cccc--------cc-ccc------cccCCCCCCCCccEEEEEeCCCCCC
Q 024316 162 REFLTIKIYQLCPPED-LELAKMLVR--PG-SMFI--------DN-LSK------ESKFSDEGYGSVKRVYLVCEEDIGL 222 (269)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~--------~~-~~~------~~~~~~~~~~~~P~l~i~g~~D~~~ 222 (269)
+......+.....+.. ..+....++ +. ..+. .. +.. ...+.. .....|++++.|.++..+
T Consensus 189 rke~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~-~~~~~pvlfi~g~~S~fv 267 (315)
T KOG2382|consen 189 RKEALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLED-GPYTGPVLFIKGLQSKFV 267 (315)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccc-cccccceeEEecCCCCCc
Confidence 0111111110000000 111111111 00 0000 00 000 001111 223689999999999999
Q ss_pred ChHHHHHHHHhCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 223 PKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
|.+.-..+.+.+|..+++.++++|||.|.|+|++|++.|.+|++.
T Consensus 268 ~~~~~~~~~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~ 312 (315)
T KOG2382|consen 268 PDEHYPRMEKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEE 312 (315)
T ss_pred ChhHHHHHHHhccchheeecccCCceeecCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999863
No 45
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.91 E-value=1.7e-23 Score=172.62 Aligned_cols=236 Identities=17% Similarity=0.112 Sum_probs=149.7
Q ss_pred ceEEEecCCCCCc-cchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC-----CCCCcEEEE
Q 024316 10 KHFVLVHGVNHGA-WCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL-----PAEEKVILV 83 (269)
Q Consensus 10 ~~ivlvHG~~~~~-~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l-----~~~~~vilV 83 (269)
..|+|+||++..+ +.|+.++..|++.||-|+++|.+|||.|+.......+++..++|+.++.+.. ..+.+..|.
T Consensus 55 ~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~ 134 (313)
T KOG1455|consen 55 GLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLF 134 (313)
T ss_pred eEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeee
Confidence 4899999998665 8899999999999999999999999999987656779999999999998853 134689999
Q ss_pred EeChhhHHHHHHhhhCCcccceeEEEeccCCCCC--CCchhh--hccCccccccCCCCcccccccccccCCCCCCccccc
Q 024316 84 GHSLGGVTLALAADKFPHKISVAVFVTAFMPDTT--HRPSFV--LEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISML 159 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (269)
||||||+|+..++.+.|+..+++|++++..+... .+...+ +......+ .+.|.. . +.++.. ...
T Consensus 135 GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~~l-----iP~wk~---v---p~~d~~-~~~ 202 (313)
T KOG1455|consen 135 GESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLSKL-----IPTWKI---V---PTKDII-DVA 202 (313)
T ss_pred ecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHHHh-----CCceee---c---CCcccc-ccc
Confidence 9999999999999889999999999987543211 111111 00011111 112210 0 100000 011
Q ss_pred cchhHHHHHHhcCC-C-HH--hHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC
Q 024316 160 FGREFLTIKIYQLC-P-PE--DLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP 235 (269)
Q Consensus 160 ~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 235 (269)
+.....+...+... . .. -...+..+++... .+... ....++|.++++|++|.++.|+.++.+.+.++
T Consensus 203 ~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~----~le~~-----l~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~ 273 (313)
T KOG1455|consen 203 FKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTA----DLEKN-----LNEVTVPFLILHGTDDKVTDPKVSKELYEKAS 273 (313)
T ss_pred cCCHHHHHHhhcCCceecCCccHHHHHHHHHHHH----HHHHh-----cccccccEEEEecCCCcccCcHHHHHHHHhcc
Confidence 11111111111100 0 00 0111111221110 01111 11247999999999999999999999998875
Q ss_pred --CCeEEEEcCCCCCCCC-CCcHHHHH---HHHHHHH
Q 024316 236 --VNEVMEIKGGDHMAML-SDPQKLCD---CLSQISL 266 (269)
Q Consensus 236 --~~~~~~i~~~gH~~~~-e~p~~~~~---~l~~f~~ 266 (269)
..+++++||.-|.++. |-++.+.. -|.+|++
T Consensus 274 S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~ 310 (313)
T KOG1455|consen 274 SSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLD 310 (313)
T ss_pred CCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 5579999999999987 55554443 3445554
No 46
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.90 E-value=7.4e-23 Score=161.31 Aligned_cols=222 Identities=16% Similarity=0.149 Sum_probs=148.1
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC--CCCcEEEEEeC
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP--AEEKVILVGHS 86 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~--~~~~vilVGHS 86 (269)
+..|+||||+..++..-+.+.+.|.++||.|+||.+||||..+...- ..+..+|-.++.+.-+.|. +...+.++|-|
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl-~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlS 93 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFL-KTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLS 93 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHh-cCCHHHHHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 58999999999999999999999999999999999999998863321 2478888888887777662 34689999999
Q ss_pred hhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHH
Q 024316 87 LGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLT 166 (269)
Q Consensus 87 mGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (269)
|||..+..+|.++| ++++|.+|+........ .+.+.+.. +.. +... ...-+++.++
T Consensus 94 mGGv~alkla~~~p--~K~iv~m~a~~~~k~~~--~iie~~l~----------y~~-~~kk---------~e~k~~e~~~ 149 (243)
T COG1647 94 MGGVFALKLAYHYP--PKKIVPMCAPVNVKSWR--IIIEGLLE----------YFR-NAKK---------YEGKDQEQID 149 (243)
T ss_pred chhHHHHHHHhhCC--ccceeeecCCcccccch--hhhHHHHH----------HHH-Hhhh---------ccCCCHHHHH
Confidence 99999999999988 99999999754311111 11111110 000 0000 0001122222
Q ss_pred HHHh--cCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC--CCeEEEE
Q 024316 167 IKIY--QLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP--VNEVMEI 242 (269)
Q Consensus 167 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~i 242 (269)
.... ...+.....-...++. ... ....-..+|++++.|++|.++|.+.+..+..... ..++..+
T Consensus 150 ~e~~~~~~~~~~~~~~~~~~i~----------~~~--~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~ 217 (243)
T COG1647 150 KEMKSYKDTPMTTTAQLKKLIK----------DAR--RSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWL 217 (243)
T ss_pred HHHHHhhcchHHHHHHHHHHHH----------HHH--hhhhhcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEE
Confidence 2111 1111111110001110 000 0111136899999999999999999998887653 4479999
Q ss_pred cCCCCCCCCCCc-HHHHHHHHHHHHh
Q 024316 243 KGGDHMAMLSDP-QKLCDCLSQISLK 267 (269)
Q Consensus 243 ~~~gH~~~~e~p-~~~~~~l~~f~~~ 267 (269)
+++||.+-+++- +.+.+.|.+|+++
T Consensus 218 e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 218 EGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred ccCCceeecchhHHHHHHHHHHHhhC
Confidence 999999877755 8899999999863
No 47
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.89 E-value=1.4e-21 Score=174.53 Aligned_cols=213 Identities=13% Similarity=0.091 Sum_probs=137.3
Q ss_pred ceEEEecCCCCC--ccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC--CCCcEEEEEe
Q 024316 10 KHFVLVHGVNHG--AWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP--AEEKVILVGH 85 (269)
Q Consensus 10 ~~ivlvHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~--~~~~vilVGH 85 (269)
.|+|++||+..+ ...|..+++.|.+.||+|+++|+||||.|..... ..+...+...+++.+.+.+ ..+++.++||
T Consensus 194 ~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~-~~d~~~~~~avld~l~~~~~vd~~ri~l~G~ 272 (414)
T PRK05077 194 FPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKL-TQDSSLLHQAVLNALPNVPWVDHTRVAAFGF 272 (414)
T ss_pred ccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCc-cccHHHHHHHHHHHHHhCcccCcccEEEEEE
Confidence 355666655544 3579889999999999999999999999965321 2345555667777777653 2368999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHH
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFL 165 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (269)
||||.++..+|...|++|+++|++++........ ....... .... ...+
T Consensus 273 S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~-----~~~~~~~------p~~~--------------------~~~l 321 (414)
T PRK05077 273 RFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTD-----PKRQQQV------PEMY--------------------LDVL 321 (414)
T ss_pred ChHHHHHHHHHHhCCcCceEEEEECCccchhhcc-----hhhhhhc------hHHH--------------------HHHH
Confidence 9999999999888899999999998643210000 0000000 0000 0000
Q ss_pred HHHHh-cCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcC
Q 024316 166 TIKIY-QLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKG 244 (269)
Q Consensus 166 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~ 244 (269)
...+- ......... . .+.... +...... .+..++|+|+|+|++|.++|++.++.+.+..++.+++++|+
T Consensus 322 a~~lg~~~~~~~~l~--~-~l~~~s-----l~~~~~l--~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~~ 391 (414)
T PRK05077 322 ASRLGMHDASDEALR--V-ELNRYS-----LKVQGLL--GRRCPTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIPF 391 (414)
T ss_pred HHHhCCCCCChHHHH--H-Hhhhcc-----chhhhhh--ccCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEccC
Confidence 00000 000111110 0 000000 0000000 11237899999999999999999998888889999999997
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHh
Q 024316 245 GDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 245 ~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
+ ++.|.++++++.+.+|+++
T Consensus 392 ~---~~~e~~~~~~~~i~~wL~~ 411 (414)
T PRK05077 392 K---PVYRNFDKALQEISDWLED 411 (414)
T ss_pred C---CccCCHHHHHHHHHHHHHH
Confidence 6 6789999999999999976
No 48
>PRK11071 esterase YqiA; Provisional
Probab=99.88 E-value=2.3e-21 Score=155.73 Aligned_cols=184 Identities=16% Similarity=0.088 Sum_probs=123.2
Q ss_pred ceEEEecCCCCCccchHH--HHHHHHh--CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEe
Q 024316 10 KHFVLVHGVNHGAWCWYK--LKARLVA--GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGH 85 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~--~~~~L~~--~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGH 85 (269)
++|||+||++++.+.|+. +.+.|++ .+|+|+++|+|||| +++++.+.++++++ +.+++++|||
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~------------~~~~~~l~~l~~~~-~~~~~~lvG~ 68 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP------------ADAAELLESLVLEH-GGDPLGLVGS 68 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH------------HHHHHHHHHHHHHc-CCCCeEEEEE
Confidence 589999999999999984 4566654 26999999999984 35777888889888 4578999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHH
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFL 165 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (269)
||||.++..+|.++|. ++|++++... +......+... ... + . ......++++++
T Consensus 69 S~Gg~~a~~~a~~~~~---~~vl~~~~~~-----~~~~~~~~~~~-------------~~~---~-~-~~~~~~~~~~~~ 122 (190)
T PRK11071 69 SLGGYYATWLSQCFML---PAVVVNPAVR-----PFELLTDYLGE-------------NEN---P-Y-TGQQYVLESRHI 122 (190)
T ss_pred CHHHHHHHHHHHHcCC---CEEEECCCCC-----HHHHHHHhcCC-------------ccc---c-c-CCCcEEEcHHHH
Confidence 9999999999988883 4678876322 11111111100 000 0 0 000111222222
Q ss_pred HHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCC
Q 024316 166 TIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGG 245 (269)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~ 245 (269)
.+ .. .... . ... ...|+++|+|++|.++|++.+.++.+. +++++++|+
T Consensus 123 ~d----------~~----~~~~-----------~---~i~-~~~~v~iihg~~De~V~~~~a~~~~~~---~~~~~~~gg 170 (190)
T PRK11071 123 YD----------LK----VMQI-----------D---PLE-SPDLIWLLQQTGDEVLDYRQAVAYYAA---CRQTVEEGG 170 (190)
T ss_pred HH----------HH----hcCC-----------c---cCC-ChhhEEEEEeCCCCcCCHHHHHHHHHh---cceEEECCC
Confidence 11 10 0000 0 001 256788999999999999999988874 467788999
Q ss_pred CCCCCCCCcHHHHHHHHHHHH
Q 024316 246 DHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 246 gH~~~~e~p~~~~~~l~~f~~ 266 (269)
+|.. +..++..+.+.+|++
T Consensus 171 dH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 171 NHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred Ccch--hhHHHhHHHHHHHhc
Confidence 9987 555888888988874
No 49
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.88 E-value=8.7e-22 Score=178.95 Aligned_cols=237 Identities=17% Similarity=0.097 Sum_probs=135.8
Q ss_pred CceEEEecCCCCCccchH-----HHHHHHHhCCCeEEEeCCCCCCCCCcccc-cccchHHhHHHHHHHHHhCCCCCcEEE
Q 024316 9 EKHFVLVHGVNHGAWCWY-----KLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLASLPAEEKVIL 82 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~-----~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-~~~~~~~~~~~l~~~i~~l~~~~~vil 82 (269)
.+|||||||+....++|+ .++..|.++||+|+++|++|+|.|.+... +.|..+.+.+.+..+++.+ +.+++++
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~-g~~kv~l 266 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAIT-GEKQVNC 266 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhc-CCCCeEE
Confidence 589999999999999996 79999999999999999999998865321 1233344445566666556 4578999
Q ss_pred EEeChhhHHHH----HHhhhC-CcccceeEEEeccCCCCCCCchhhhccCcc---------ccc-cCCCCcccccccccc
Q 024316 83 VGHSLGGVTLA----LAADKF-PHKISVAVFVTAFMPDTTHRPSFVLEQVPY---------SEK-MGKEDDSWLDTQFSQ 147 (269)
Q Consensus 83 VGHSmGG~i~~----~~a~~~-p~~v~~lvli~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~ 147 (269)
|||||||.+++ .+++.. +++|++++++++... ..... .+ ..+.. ... .++.....+...+..
T Consensus 267 vG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~D-f~~~G-~l-~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~ 343 (532)
T TIGR01838 267 VGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLD-FSDPG-EL-GVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSL 343 (532)
T ss_pred EEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcC-CCCcc-hh-hhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 99999999742 234454 789999999997543 11111 10 00100 000 000000111100000
Q ss_pred cCCCCCCccccccchhHHHHHHhcCC----------------CHHhH-HHHHHhcCCCccccccccccccCCCCCCCCcc
Q 024316 148 CDASNPSHISMLFGREFLTIKIYQLC----------------PPEDL-ELAKMLVRPGSMFIDNLSKESKFSDEGYGSVK 210 (269)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 210 (269)
..+ .+. .+ ..++..++.... +.... .+...+...+......+............++|
T Consensus 344 lrp-~~l----~w-~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vP 417 (532)
T TIGR01838 344 LRE-NDL----IW-NYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVP 417 (532)
T ss_pred cCh-hhH----HH-HHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcCCeeEECCEecchhhCCCC
Confidence 000 000 00 001111111111 00000 01111121111111111100011122335799
Q ss_pred EEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCCCCCCcH
Q 024316 211 RVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQ 255 (269)
Q Consensus 211 ~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~ 255 (269)
+++|+|++|.++|++.++.+.+.+++.+.++++++||.+++|+|.
T Consensus 418 vLvV~G~~D~IvP~~sa~~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 418 VYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred EEEEeeCCCCcCCHHHHHHHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 999999999999999999999999988899999999999999985
No 50
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.88 E-value=1e-21 Score=166.80 Aligned_cols=230 Identities=13% Similarity=0.106 Sum_probs=130.3
Q ss_pred CceEEEecCCCCC----ccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC----CCCcE
Q 024316 9 EKHFVLVHGVNHG----AWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP----AEEKV 80 (269)
Q Consensus 9 g~~ivlvHG~~~~----~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~----~~~~v 80 (269)
+++||++||++.. ...|..+++.|++.||+|+++|+||||.|+.. ..+++++.+|+.++++.+. +.+++
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~---~~~~~~~~~d~~~~~~~l~~~~~g~~~i 102 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGE---NLGFEGIDADIAAAIDAFREAAPHLRRI 102 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence 4688888887532 23467788999989999999999999999743 2466777778877777651 23579
Q ss_pred EEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCcccccc
Q 024316 81 ILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLF 160 (269)
Q Consensus 81 ilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (269)
+|+||||||.++..+|. .+++|+++|++++.................... ......| ...+ + . .+.+
T Consensus 103 ~l~G~S~Gg~~a~~~a~-~~~~v~~lil~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~----~-g----~~~~ 169 (274)
T TIGR03100 103 VAWGLCDAASAALLYAP-ADLRVAGLVLLNPWVRTEAAQAASRIRHYYLGQ--LLSADFW-RKLL----S-G----EVNL 169 (274)
T ss_pred EEEEECHHHHHHHHHhh-hCCCccEEEEECCccCCcccchHHHHHHHHHHH--HhChHHH-HHhc----C-C----CccH
Confidence 99999999998888764 467999999998753321111000000000000 0000000 0000 0 0 0000
Q ss_pred chhHHHHHHhcCCCHHhHHHHHHhcCCCcc-ccccccccccCCCCCCCCccEEEEEeCCCCCCChHHH------HHHHHh
Q 024316 161 GREFLTIKIYQLCPPEDLELAKMLVRPGSM-FIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQ------HWMIQN 233 (269)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~------~~~~~~ 233 (269)
. +...+ +.. .. .....+... ......... .......++|+++++|++|.+.+ ... +...+.
T Consensus 170 ~-~~~~~-~~~-----~~---~~~~~~~~~~~~~~~~~~~-~~~l~~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~ 237 (274)
T TIGR03100 170 G-SSLRG-LGD-----AL---LKARQKGDEVAHGGLAERM-KAGLERFQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGA 237 (274)
T ss_pred H-HHHHH-HHH-----HH---HhhhhcCCCcccchHHHHH-HHHHHhcCCcEEEEEcCcchhHH-HHHHHhccChhhHHH
Confidence 0 00000 000 00 000000000 000000000 00011137899999999998753 332 333343
Q ss_pred C--CCCeEEEEcCCCCCCCCCCc-HHHHHHHHHHHH
Q 024316 234 Y--PVNEVMEIKGGDHMAMLSDP-QKLCDCLSQISL 266 (269)
Q Consensus 234 ~--~~~~~~~i~~~gH~~~~e~p-~~~~~~l~~f~~ 266 (269)
+ ++.+++.+++++|++..|++ +++++.|.+|++
T Consensus 238 l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 238 LEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred hhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 3 77888999999999966666 999999999986
No 51
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.88 E-value=1.1e-21 Score=173.46 Aligned_cols=255 Identities=15% Similarity=0.140 Sum_probs=144.9
Q ss_pred CceEEEecCCCCCc-------------cchHHHHH---HHHhCCCeEEEeCCCCCCCCCcc-----------c-------
Q 024316 9 EKHFVLVHGVNHGA-------------WCWYKLKA---RLVAGGHRVTAVDLAASGINMKR-----------I------- 54 (269)
Q Consensus 9 g~~ivlvHG~~~~~-------------~~w~~~~~---~L~~~g~~Via~Dl~G~G~S~~~-----------~------- 54 (269)
...||++|++..++ ..|..++- .|--..|.||++|..|-|.|..+ +
T Consensus 56 ~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~~ 135 (389)
T PRK06765 56 SNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPYG 135 (389)
T ss_pred CCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCccC
Confidence 46889999997643 23666554 24344699999999997652110 0
Q ss_pred --ccccchHHhHHHHHHHHHhCCCCCcEE-EEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCcccc
Q 024316 55 --EDVHTFHAYSEPLMEVLASLPAEEKVI-LVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSE 131 (269)
Q Consensus 55 --~~~~~~~~~~~~l~~~i~~l~~~~~vi-lVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~ 131 (269)
-..+|+.++++++.++++++ +.+++. ||||||||+++..+|.++|++|++||++++.............+.....+
T Consensus 136 ~~fP~~t~~d~~~~~~~ll~~l-gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~~~~~~~~~~~~~~~ai 214 (389)
T PRK06765 136 MDFPVVTILDFVRVQKELIKSL-GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQNDAWTSVNVLQNWAEAI 214 (389)
T ss_pred CCCCcCcHHHHHHHHHHHHHHc-CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCCChhHHHHHHHHHHHHH
Confidence 12369999999999999999 567875 99999999999999999999999999998754322111000111000000
Q ss_pred ccCCCCcccccccccccCCCCC-------CccccccchhHHHHHHhcCC--------------CHHhH-HH-HHHhc---
Q 024316 132 KMGKEDDSWLDTQFSQCDASNP-------SHISMLFGREFLTIKIYQLC--------------PPEDL-EL-AKMLV--- 185 (269)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~-~~~~~--- 185 (269)
. ....|..-.+....+..+ ....+.+.++++.+.+.... ..+.. .. ...+.
T Consensus 215 ~---~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~ 291 (389)
T PRK06765 215 R---LDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELV 291 (389)
T ss_pred H---hCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHHHHHHHHHHHhhhcc
Confidence 0 001111000000000000 00000111122221111100 00000 00 00000
Q ss_pred CCCcccc-------ccccccc-cC-CCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC----CCeEEEEcC-CCCCCCC
Q 024316 186 RPGSMFI-------DNLSKES-KF-SDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP----VNEVMEIKG-GDHMAML 251 (269)
Q Consensus 186 ~~~~~~~-------~~~~~~~-~~-~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~i~~-~gH~~~~ 251 (269)
-+..+.. .++.... .. ......++|+++|+|++|.++|++.++.+.+.++ +++++++++ +||++++
T Consensus 292 Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~l 371 (389)
T PRK06765 292 DANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGV 371 (389)
T ss_pred ChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhh
Confidence 0001100 0000000 00 0011247899999999999999999998888775 578899985 9999999
Q ss_pred CCcHHHHHHHHHHHHh
Q 024316 252 SDPQKLCDCLSQISLK 267 (269)
Q Consensus 252 e~p~~~~~~l~~f~~~ 267 (269)
|+|+++++.|.+|+++
T Consensus 372 e~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 372 FDIHLFEKKIYEFLNR 387 (389)
T ss_pred cCHHHHHHHHHHHHcc
Confidence 9999999999999864
No 52
>PRK10985 putative hydrolase; Provisional
Probab=99.87 E-value=1.4e-21 Score=169.95 Aligned_cols=231 Identities=15% Similarity=0.066 Sum_probs=120.4
Q ss_pred CceEEEecCCCCCccc--hHHHHHHHHhCCCeEEEeCCCCCCCCCccccccc---chHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 9 EKHFVLVHGVNHGAWC--WYKLKARLVAGGHRVTAVDLAASGINMKRIEDVH---TFHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~--w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~---~~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
.++|||+||++.+... ++.++..|.+.||+|+++|+||||.++......+ ..+|....+..+.+.+ ...++++|
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~~~~~~v 136 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREF-GHVPTAAV 136 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHhC-CCCCEEEE
Confidence 4799999999866543 4678899999999999999999997753211112 2333333232233334 34689999
Q ss_pred EeChhhHHHHHHhhhCCcc--cceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccc-c-CCCCCCccccc
Q 024316 84 GHSLGGVTLALAADKFPHK--ISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQ-C-DASNPSHISML 159 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~p~~--v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 159 (269)
||||||.++..++..++++ +.++|+++++..... ....+++..... ....+...+.. . ......+....
T Consensus 137 G~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~--~~~~~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~~ 209 (324)
T PRK10985 137 GYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEA--CSYRMEQGFSRV-----YQRYLLNLLKANAARKLAAYPGTLP 209 (324)
T ss_pred EecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHH--HHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999777666665543 889999986432110 000000000000 00000000000 0 00000000000
Q ss_pred cchhHHHHHHhcCCCHHhHHHHHHhcCCCccc---cccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCC
Q 024316 160 FGREFLTIKIYQLCPPEDLELAKMLVRPGSMF---IDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPV 236 (269)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 236 (269)
.+.+.+ .......++. .....+...+ .+.+............++|+++|+|++|.+++++..+.+.+..++
T Consensus 210 ~~~~~~----~~~~~~~~fd--~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~ 283 (324)
T PRK10985 210 INLAQL----KSVRRLREFD--DLITARIHGFADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPESLPPN 283 (324)
T ss_pred CCHHHH----hcCCcHHHHh--hhheeccCCCCCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHHhCCC
Confidence 011000 0000000000 0000010000 000000000011123478999999999999999888777777788
Q ss_pred CeEEEEcCCCCCCCCCC
Q 024316 237 NEVMEIKGGDHMAMLSD 253 (269)
Q Consensus 237 ~~~~~i~~~gH~~~~e~ 253 (269)
.++++++++||++++|.
T Consensus 284 ~~~~~~~~~GH~~~~~g 300 (324)
T PRK10985 284 VEYQLTEHGGHVGFVGG 300 (324)
T ss_pred eEEEECCCCCceeeCCC
Confidence 88899999999999985
No 53
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.86 E-value=1.9e-22 Score=163.93 Aligned_cols=104 Identities=26% Similarity=0.364 Sum_probs=86.3
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhC-CCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC--CCCcEEEEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAG-GHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP--AEEKVILVG 84 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~-g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~--~~~~vilVG 84 (269)
.|+.++|+||++.|+-+|..++..|... .-||+|+|+||||+|.-...+..+.+.++.|+.++|+.+- ...+++|||
T Consensus 73 ~gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~~~iilVG 152 (343)
T KOG2564|consen 73 EGPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGELPPQIILVG 152 (343)
T ss_pred CccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 5889999999999999999999988543 3488999999999987544445799999999999999873 335799999
Q ss_pred eChhhHHHHHHhh--hCCcccceeEEEecc
Q 024316 85 HSLGGVTLALAAD--KFPHKISVAVFVTAF 112 (269)
Q Consensus 85 HSmGG~i~~~~a~--~~p~~v~~lvli~~~ 112 (269)
|||||+|+.+.|. ..|+ +.+|++|+-+
T Consensus 153 HSmGGaIav~~a~~k~lps-l~Gl~viDVV 181 (343)
T KOG2564|consen 153 HSMGGAIAVHTAASKTLPS-LAGLVVIDVV 181 (343)
T ss_pred ccccchhhhhhhhhhhchh-hhceEEEEEe
Confidence 9999999887754 3466 8899999853
No 54
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.86 E-value=6.3e-20 Score=151.44 Aligned_cols=250 Identities=19% Similarity=0.162 Sum_probs=137.7
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhC--CCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeC
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAG--GHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHS 86 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~--g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHS 86 (269)
+++|+|+||++.+...|......+... .|+|+++|+||||.|. .. .++...+++++..+++.+ +..+++|||||
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S 96 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD-PA--GYSLSAYADDLAALLDAL-GLEKVVLVGHS 96 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC-cc--cccHHHHHHHHHHHHHHh-CCCceEEEEec
Confidence 458999999999999998843334332 1899999999999996 11 235555689999999988 44679999999
Q ss_pred hhhHHHHHHhhhCCcccceeEEEeccCC-CCCCCchh--hhccCccccccCCCCcccccccccccCCCCCCccccccchh
Q 024316 87 LGGVTLALAADKFPHKISVAVFVTAFMP-DTTHRPSF--VLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGRE 163 (269)
Q Consensus 87 mGG~i~~~~a~~~p~~v~~lvli~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (269)
|||.++..++.++|+++.++|++++... ........ .................... ...... .. .....+...
T Consensus 97 ~Gg~~~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~-~~~~~~~~~ 172 (282)
T COG0596 97 MGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADLLLGLDAAA--FAALLA-AL-GLLAALAAA 172 (282)
T ss_pred ccHHHHHHHHHhcchhhheeeEecCCCCcccccCccccCccccchhhhhhhhhccchhh--hhhhhh-cc-ccccccccc
Confidence 9999999999999999999999996532 11000000 00000000000000000000 000000 00 000000000
Q ss_pred HHHHHHhc-CCC-HHhHHHHHHhcCCCcc--ccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCC-Ce
Q 024316 164 FLTIKIYQ-LCP-PEDLELAKMLVRPGSM--FIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPV-NE 238 (269)
Q Consensus 164 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~ 238 (269)
........ ... ................ .................++|+++++|++|.+.|......+.+..+. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~~~~ 252 (282)
T COG0596 173 ARAGLAEALRAPLLGAAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARRLAAALPNDAR 252 (282)
T ss_pred chhccccccccccchhHhhhhhhhcccccchhhhcccccccchhhccCCCCeEEEecCCCCcCCHHHHHHHHhhCCCCce
Confidence 00000000 000 0000000000000000 0000000000001122368999999999976666656667777775 88
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 239 VMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 239 ~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
+.+++++||++++|+|+.+++.+.+|++
T Consensus 253 ~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 253 LVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred EEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 9999999999999999999999988543
No 55
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.84 E-value=2.5e-20 Score=163.71 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=80.1
Q ss_pred CceEEEecCCCCCccch-----HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHH-HHHHHH----hCCCCC
Q 024316 9 EKHFVLVHGVNHGAWCW-----YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEP-LMEVLA----SLPAEE 78 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w-----~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~-l~~~i~----~l~~~~ 78 (269)
..||+++||+..++..| +.+++.|.+.||+|+++|++|+|.|+.. .++++|+.+ +.++++ .. +.+
T Consensus 62 ~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~----~~~~d~~~~~~~~~v~~l~~~~-~~~ 136 (350)
T TIGR01836 62 KTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY----LTLDDYINGYIDKCVDYICRTS-KLD 136 (350)
T ss_pred CCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc----CCHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 46999999987666654 6899999999999999999999987632 366776543 444333 33 457
Q ss_pred cEEEEEeChhhHHHHHHhhhCCcccceeEEEeccC
Q 024316 79 KVILVGHSLGGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
++++|||||||.++..++..+|++|+++|+++++.
T Consensus 137 ~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~ 171 (350)
T TIGR01836 137 QISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPV 171 (350)
T ss_pred cccEEEECHHHHHHHHHHHhCchheeeEEEecccc
Confidence 89999999999999998889999999999998754
No 56
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.84 E-value=3.3e-22 Score=164.14 Aligned_cols=214 Identities=16% Similarity=0.155 Sum_probs=125.6
Q ss_pred CeEEEeCCCCCCCCCc---ccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccC
Q 024316 37 HRVTAVDLAASGINMK---RIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 37 ~~Via~Dl~G~G~S~~---~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
|+|+++|+||+|.|+. .....++.+++++++..+++.+ +.+++++|||||||.++..+|..+|++|+++|++++..
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~~ 79 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREAL-GIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPPP 79 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHH-TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESS
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHh-CCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeeec
Confidence 7899999999999985 4445689999999999999999 55789999999999999999999999999999998741
Q ss_pred CCCCCCchhhhccCccc-cccCCCCcccccccccccCCCCCCccccccch--hHHHHHHhcCCCHHhHHHHHHhcCCCcc
Q 024316 114 PDTTHRPSFVLEQVPYS-EKMGKEDDSWLDTQFSQCDASNPSHISMLFGR--EFLTIKIYQLCPPEDLELAKMLVRPGSM 190 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (269)
.. ........... .................. . ........ ....+.... .................
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 148 (230)
T PF00561_consen 80 DL----PDGLWNRIWPRGNLQGQLLDNFFNFLSDPI---K--PLLGRWPKQFFAYDREFVE--DFLKQFQSQQYARFAET 148 (230)
T ss_dssp HH----HHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHH--THHHHHHHHHHHHTCHH
T ss_pred cc----hhhhhHHHHhhhhhhhhHHHhhhccccccc---h--hhhhhhhhheeeccCcccc--chhhccchhhhhHHHHH
Confidence 00 00000000000 000000000000000000 0 00000000 000000000 00000000000000000
Q ss_pred ------cc---ccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCCCCCCcHHHHHHH
Q 024316 191 ------FI---DNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQKLCDCL 261 (269)
Q Consensus 191 ------~~---~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l 261 (269)
+. ...............++|+++++|++|.++|++....+.+..|+.++++++++||+.++|.|+++++.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i 228 (230)
T PF00561_consen 149 DAFDNMFWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEII 228 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhh
Confidence 00 000000000011225899999999999999999999999999999999999999999999999999987
Q ss_pred H
Q 024316 262 S 262 (269)
Q Consensus 262 ~ 262 (269)
.
T Consensus 229 ~ 229 (230)
T PF00561_consen 229 I 229 (230)
T ss_dssp H
T ss_pred c
Confidence 4
No 57
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.84 E-value=5.7e-20 Score=180.75 Aligned_cols=255 Identities=16% Similarity=0.074 Sum_probs=141.9
Q ss_pred CCceEEEecCCCCCccchHHH-----HHHHHhCCCeEEEeCCCCCCCCCcccc-cccchHHhHHHHHHHHHh---CCCCC
Q 024316 8 EEKHFVLVHGVNHGAWCWYKL-----KARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVLAS---LPAEE 78 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~-----~~~L~~~g~~Via~Dl~G~G~S~~~~~-~~~~~~~~~~~l~~~i~~---l~~~~ 78 (269)
.++|||||||+..+...|+.+ ++.|.+.||+|+++| +|.|++... ...++++++..+.+.++. + ..+
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d---~G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~-~~~ 141 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVID---FGSPDKVEGGMERNLADHVVALSEAIDTVKDV-TGR 141 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEc---CCCCChhHcCccCCHHHHHHHHHHHHHHHHHh-hCC
Confidence 478999999999999999875 889988899999999 466665422 235888888888877765 3 236
Q ss_pred cEEEEEeChhhHHHHHHhhhC-CcccceeEEEeccCCCCCCCchhhh-------ccCcc-ccccCCCCcccccc-ccccc
Q 024316 79 KVILVGHSLGGVTLALAADKF-PHKISVAVFVTAFMPDTTHRPSFVL-------EQVPY-SEKMGKEDDSWLDT-QFSQC 148 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~-p~~v~~lvli~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~-~~~~~ 148 (269)
+++||||||||.+++.+++.+ +++|++||++++........+.... ..+.. .+........|+.. .+...
T Consensus 142 ~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 221 (994)
T PRK07868 142 DVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTGFQML 221 (994)
T ss_pred ceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHHHHhc
Confidence 899999999999998877644 5689999999875321100000000 00000 00000000011000 00000
Q ss_pred CCCCCCcc------------ccccchhHHHHHHhc----CCCH-HhHHHHHHhcCCCccccccccccccCCCCCCCCccE
Q 024316 149 DASNPSHI------------SMLFGREFLTIKIYQ----LCPP-EDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKR 211 (269)
Q Consensus 149 ~~~~~~~~------------~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 211 (269)
.+ ..... ....+.+.+.+.+.. ..+. ....+...+...+......+............++|+
T Consensus 222 ~p-~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~ 300 (994)
T PRK07868 222 DP-VKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADITCPV 300 (994)
T ss_pred Ch-hHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCCCCE
Confidence 00 00000 000000000000000 0000 000011111110000000000000000122347899
Q ss_pred EEEEeCCCCCCChHHHHHHHHhCCCCeE-EEEcCCCCCCCCC---CcHHHHHHHHHHHHh
Q 024316 212 VYLVCEEDIGLPKQFQHWMIQNYPVNEV-MEIKGGDHMAMLS---DPQKLCDCLSQISLK 267 (269)
Q Consensus 212 l~i~g~~D~~~~~~~~~~~~~~~~~~~~-~~i~~~gH~~~~e---~p~~~~~~l~~f~~~ 267 (269)
|+|+|++|+++|++..+.+.+.++++++ ++++++||+.++- -|+++...|.+|+.+
T Consensus 301 L~i~G~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~ 360 (994)
T PRK07868 301 LAFVGEVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKW 360 (994)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHH
Confidence 9999999999999999999999998887 6789999998775 567788888888764
No 58
>PRK13604 luxD acyl transferase; Provisional
Probab=99.84 E-value=2.7e-19 Score=151.37 Aligned_cols=205 Identities=11% Similarity=0.070 Sum_probs=122.6
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCC-CCCCcccccccchHHhHHHHHHHHH---hCCCCCcEEEEE
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAAS-GINMKRIEDVHTFHAYSEPLMEVLA---SLPAEEKVILVG 84 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~-G~S~~~~~~~~~~~~~~~~l~~~i~---~l~~~~~vilVG 84 (269)
.++||++||++.+...+..+++.|.++||.|+.+|++|| |.|+....+ .++.....|+..+|+ +. ...++.|+|
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~-~t~s~g~~Dl~aaid~lk~~-~~~~I~LiG 114 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDE-FTMSIGKNSLLTVVDWLNTR-GINNLGLIA 114 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccc-CcccccHHHHHHHHHHHHhc-CCCceEEEE
Confidence 368999999999887799999999999999999999998 999764321 233334556644444 43 346899999
Q ss_pred eChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCcc-cccc-ch
Q 024316 85 HSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHI-SMLF-GR 162 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 162 (269)
|||||+++..+|.. .+++.+|+.|++.... ...+...... +....+.. + + ..... .... ..
T Consensus 115 ~SmGgava~~~A~~--~~v~~lI~~sp~~~l~-----d~l~~~~~~~---~~~~p~~~--l----p-~~~d~~g~~l~~~ 177 (307)
T PRK13604 115 ASLSARIAYEVINE--IDLSFLITAVGVVNLR-----DTLERALGYD---YLSLPIDE--L----P-EDLDFEGHNLGSE 177 (307)
T ss_pred ECHHHHHHHHHhcC--CCCCEEEEcCCcccHH-----HHHHHhhhcc---cccCcccc--c----c-cccccccccccHH
Confidence 99999988666643 3488899888753311 1111111000 00000000 0 0 00000 0000 01
Q ss_pred hHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC--CCeEE
Q 024316 163 EFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP--VNEVM 240 (269)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~ 240 (269)
.++.. .+..... . ..++ .......++|.|+|+|++|.++|++.++.+.+.++ .++++
T Consensus 178 ~f~~~-~~~~~~~-~------~~s~-------------i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~ 236 (307)
T PRK13604 178 VFVTD-CFKHGWD-T------LDST-------------INKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLY 236 (307)
T ss_pred HHHHH-HHhcCcc-c------cccH-------------HHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEE
Confidence 12111 1000000 0 0000 00011126899999999999999999999888764 67899
Q ss_pred EEcCCCCCCCCCCc
Q 024316 241 EIKGGDHMAMLSDP 254 (269)
Q Consensus 241 ~i~~~gH~~~~e~p 254 (269)
++||++|.. .|++
T Consensus 237 ~i~Ga~H~l-~~~~ 249 (307)
T PRK13604 237 SLIGSSHDL-GENL 249 (307)
T ss_pred EeCCCcccc-Ccch
Confidence 999999976 5555
No 59
>PLN02872 triacylglycerol lipase
Probab=99.83 E-value=1.5e-19 Score=160.03 Aligned_cols=258 Identities=14% Similarity=0.121 Sum_probs=141.3
Q ss_pred CceEEEecCCCCCccchH------HHHHHHHhCCCeEEEeCCCCCCCCCc----ccc-c---ccchHHhH-HHHHHHHHh
Q 024316 9 EKHFVLVHGVNHGAWCWY------KLKARLVAGGHRVTAVDLAASGINMK----RIE-D---VHTFHAYS-EPLMEVLAS 73 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~------~~~~~L~~~g~~Via~Dl~G~G~S~~----~~~-~---~~~~~~~~-~~l~~~i~~ 73 (269)
+++|+|+||++.++..|. .+...|++.||+|+++|+||+|.|.+ ... . .+++++++ .|+.++|+.
T Consensus 74 ~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~ 153 (395)
T PLN02872 74 GPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHY 153 (395)
T ss_pred CCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHH
Confidence 679999999999999883 35556888899999999999876532 111 1 35888888 788888886
Q ss_pred CC--CCCcEEEEEeChhhHHHHHHhhhCCc---ccceeEEEeccCCCCC-CCchh-hhcc-Cccc----cccCC--CCcc
Q 024316 74 LP--AEEKVILVGHSLGGVTLALAADKFPH---KISVAVFVTAFMPDTT-HRPSF-VLEQ-VPYS----EKMGK--EDDS 139 (269)
Q Consensus 74 l~--~~~~vilVGHSmGG~i~~~~a~~~p~---~v~~lvli~~~~~~~~-~~~~~-~~~~-~~~~----~~~~~--~~~~ 139 (269)
+. ..+++++|||||||.++..++ .+|+ +|+.++++++...... ..+.. .+.. .... ..... +...
T Consensus 154 i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 232 (395)
T PLN02872 154 VYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSD 232 (395)
T ss_pred HHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcH
Confidence 51 236899999999999877544 5676 6888888887543211 11110 0000 0000 00000 0000
Q ss_pred ccccccc-ccCCCC--C------CccccccchhHHHHHHhcCC---CHHh-HHHHHHhcCCCccc-cc------c--ccc
Q 024316 140 WLDTQFS-QCDASN--P------SHISMLFGREFLTIKIYQLC---PPED-LELAKMLVRPGSMF-ID------N--LSK 197 (269)
Q Consensus 140 ~~~~~~~-~~~~~~--~------~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~-~~------~--~~~ 197 (269)
.+..... ...... . ......+....+...+.... .... ..+. .+.+...+. .+ . ...
T Consensus 233 ~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pagtS~k~~~H~~-Q~~~s~~f~~yDyg~~~n~~~Yg~ 311 (395)
T PLN02872 233 VLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPHPSSVKNLRHLF-QMIRKGTFAHYDYGIFKNLKLYGQ 311 (395)
T ss_pred HHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCCcchHHHHHHHH-HHHhcCCcccCCCCchhhHHHhCC
Confidence 0000000 000000 0 00000000000000000000 0000 0011 111111111 00 0 000
Q ss_pred --cccCCCCCC-CCccEEEEEeCCCCCCChHHHHHHHHhCCC-CeEEEEcCCCCC---CCCCCcHHHHHHHHHHHHhh
Q 024316 198 --ESKFSDEGY-GSVKRVYLVCEEDIGLPKQFQHWMIQNYPV-NEVMEIKGGDHM---AMLSDPQKLCDCLSQISLKY 268 (269)
Q Consensus 198 --~~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~---~~~e~p~~~~~~l~~f~~~~ 268 (269)
+..+..... .++|+++++|++|.+++++..+.+.+.++. .+++.++++||+ ...|.|+++++.|.+|+++|
T Consensus 312 ~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 312 VNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred CCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 001111111 147999999999999999999988888876 578889999995 45599999999999999864
No 60
>PRK10566 esterase; Provisional
Probab=99.82 E-value=8.6e-19 Score=146.59 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=117.4
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCccc-ccc---------cchHHhHHHHHHHHHhCC--C
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRI-EDV---------HTFHAYSEPLMEVLASLP--A 76 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~-~~~---------~~~~~~~~~l~~~i~~l~--~ 76 (269)
.++|||+||++.+...|..++..|++.||+|+++|+||||.|.... ... .+++++.+.+..+ .+.+ .
T Consensus 27 ~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~ 105 (249)
T PRK10566 27 LPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAI-REEGWLL 105 (249)
T ss_pred CCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHH-HhcCCcC
Confidence 4799999999999889999999999899999999999999753211 000 1222332222222 2221 2
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCcc
Q 024316 77 EEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHI 156 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (269)
.++++++||||||.++..++.++|+....++++.+... ....+.. +..... ..
T Consensus 106 ~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-------------~~~~~~-~~--- 158 (249)
T PRK10566 106 DDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYF----------TSLARTL-------------FPPLIP-ET--- 158 (249)
T ss_pred ccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHH----------HHHHHHh-------------cccccc-cc---
Confidence 35899999999999999888887764434443322100 0000000 000000 00
Q ss_pred ccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCC
Q 024316 157 SMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPV 236 (269)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 236 (269)
.. ......... ....... .... .....+.|+|+++|++|.++|++..+++.+.++.
T Consensus 159 ~~--~~~~~~~~~------------~~~~~~~------~~~~----~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~ 214 (249)
T PRK10566 159 AA--QQAEFNNIV------------APLAEWE------VTHQ----LEQLADRPLLLWHGLADDVVPAAESLRLQQALRE 214 (249)
T ss_pred cc--cHHHHHHHH------------HHHhhcC------hhhh----hhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 00 000000000 0000000 0000 0011257999999999999999998888765432
Q ss_pred ------CeEEEEcCCCCCCCCCCcHHHHHHHHHHHHhh
Q 024316 237 ------NEVMEIKGGDHMAMLSDPQKLCDCLSQISLKY 268 (269)
Q Consensus 237 ------~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~~ 268 (269)
.+++.++++||... |+ ..+.+.+|++++
T Consensus 215 ~g~~~~~~~~~~~~~~H~~~---~~-~~~~~~~fl~~~ 248 (249)
T PRK10566 215 RGLDKNLTCLWEPGVRHRIT---PE-ALDAGVAFFRQH 248 (249)
T ss_pred cCCCcceEEEecCCCCCccC---HH-HHHHHHHHHHhh
Confidence 35667899999863 43 456677888764
No 61
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.82 E-value=3.1e-20 Score=144.34 Aligned_cols=234 Identities=13% Similarity=0.044 Sum_probs=153.9
Q ss_pred cCCCCceEEEecCCCCCcc-chHHHHHHHHhC-CCeEEEeCCCCCCCCCcccc--cccchHHhHHHHHHHHHhCCCCCcE
Q 024316 5 VGMEEKHFVLVHGVNHGAW-CWYKLKARLVAG-GHRVTAVDLAASGINMKRIE--DVHTFHAYSEPLMEVLASLPAEEKV 80 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~-~w~~~~~~L~~~-g~~Via~Dl~G~G~S~~~~~--~~~~~~~~~~~l~~~i~~l~~~~~v 80 (269)
.|.+..-|+++.|.-.+.+ .|.+++..|.+. .+.|+++|-||+|.|..+.. ...-+...+++..+++++| ..+++
T Consensus 38 ~G~G~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL-k~~~f 116 (277)
T KOG2984|consen 38 YGHGPNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL-KLEPF 116 (277)
T ss_pred cCCCCceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh-CCCCe
Confidence 4554569999999965554 699888877443 38999999999999964421 2223445667778888888 56899
Q ss_pred EEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCcccccc
Q 024316 81 ILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLF 160 (269)
Q Consensus 81 ilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (269)
.+.|+|=||..+..+|+++++.|.++|+.++.+...... .. ..+.+. ....|... .+.+.-..+
T Consensus 117 svlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~--~m---a~kgiR---dv~kWs~r--------~R~P~e~~Y 180 (277)
T KOG2984|consen 117 SVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLG--AM---AFKGIR---DVNKWSAR--------GRQPYEDHY 180 (277)
T ss_pred eEeeecCCCeEEEEeeccChhhhhhheeecccceecchh--HH---HHhchH---HHhhhhhh--------hcchHHHhc
Confidence 999999999999999999999999999998754322110 01 011110 01112111 011111223
Q ss_pred chhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEE
Q 024316 161 GREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVM 240 (269)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~ 240 (269)
+++.+++......+ ......-+.... + +.......++|+++++|+.|++++....-.+....+.++++
T Consensus 181 g~e~f~~~wa~wvD---~v~qf~~~~dG~-f--------Cr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~ 248 (277)
T KOG2984|consen 181 GPETFRTQWAAWVD---VVDQFHSFCDGR-F--------CRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVE 248 (277)
T ss_pred CHHHHHHHHHHHHH---HHHHHhhcCCCc-h--------HhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcccceEE
Confidence 34444332211111 000001111111 1 11122334899999999999999988888888888999999
Q ss_pred EEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 241 EIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 241 ~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
+.|..+|..++--+++|+..+.+|++.
T Consensus 249 ~~peGkHn~hLrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 249 IHPEGKHNFHLRYAKEFNKLVLDFLKS 275 (277)
T ss_pred EccCCCcceeeechHHHHHHHHHHHhc
Confidence 999999999999999999999999974
No 62
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.81 E-value=3.5e-19 Score=149.43 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=84.5
Q ss_pred CceEEEecCCCCCc----cchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHH---HhCCCCCcEE
Q 024316 9 EKHFVLVHGVNHGA----WCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVL---ASLPAEEKVI 81 (269)
Q Consensus 9 g~~ivlvHG~~~~~----~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i---~~l~~~~~vi 81 (269)
.++|||+||++... ..|..+++.|++.||+|+++|+||||.|+.... ..+++.+++|+.+++ ++. ..++++
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~-~~~~~~~~~Dv~~ai~~L~~~-~~~~v~ 102 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFA-AARWDVWKEDVAAAYRWLIEQ-GHPPVT 102 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccc-cCCHHHHHHHHHHHHHHHHhc-CCCCEE
Confidence 35799999998643 457778999988999999999999999976443 347778888776654 444 357899
Q ss_pred EEEeChhhHHHHHHhhhCCcccceeEEEeccCC
Q 024316 82 LVGHSLGGVTLALAADKFPHKISVAVFVTAFMP 114 (269)
Q Consensus 82 lVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~ 114 (269)
|+||||||.++..+|.++|++++++|++++...
T Consensus 103 LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 103 LWGLRLGALLALDAANPLAAKCNRLVLWQPVVS 135 (266)
T ss_pred EEEECHHHHHHHHHHHhCccccceEEEeccccc
Confidence 999999999999999899999999999986533
No 63
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.78 E-value=1e-17 Score=128.15 Aligned_cols=144 Identities=22% Similarity=0.358 Sum_probs=108.6
Q ss_pred eEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~ 90 (269)
+|||+||++.+...|..+++.|++.||.|+++|+||+|.+.. ...+.++.+++.+ +.. ...+++|+||||||.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~-~~~~i~l~G~S~Gg~ 73 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHGDSDG----ADAVERVLADIRA--GYP-DPDRIILIGHSMGGA 73 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTSTTSHH----SHHHHHHHHHHHH--HHC-TCCEEEEEEETHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCCccch----hHHHHHHHHHHHh--hcC-CCCcEEEEEEccCcH
Confidence 699999999999999999999999999999999999998832 1233343443321 112 336899999999999
Q ss_pred HHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHHHHh
Q 024316 91 TLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIY 170 (269)
Q Consensus 91 i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
++..++.+. .+|+++|+++++ + . . ..+
T Consensus 74 ~a~~~~~~~-~~v~~~v~~~~~-~----------~--~---------------------------------~~~------ 100 (145)
T PF12695_consen 74 IAANLAARN-PRVKAVVLLSPY-P----------D--S---------------------------------EDL------ 100 (145)
T ss_dssp HHHHHHHHS-TTESEEEEESES-S----------G--C---------------------------------HHH------
T ss_pred HHHHHhhhc-cceeEEEEecCc-c----------c--h---------------------------------hhh------
Confidence 999888776 799999988751 0 0 0 000
Q ss_pred cCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC-CCeEEEEcCCCCC
Q 024316 171 QLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP-VNEVMEIKGGDHM 248 (269)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~ 248 (269)
. . .++|+++++|++|.++|++..+.+.+.++ ..+++++++++|+
T Consensus 101 --------~-----------------~---------~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 101 --------A-----------------K---------IRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp --------T-----------------T---------TTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred --------h-----------------c---------cCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 0 0 14489999999999999999988877766 5689999999995
No 64
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.71 E-value=6.9e-17 Score=143.37 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=81.9
Q ss_pred CCCceEEEecCCCCCc--cchHH-HHHHHH--hCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC----C-C
Q 024316 7 MEEKHFVLVHGVNHGA--WCWYK-LKARLV--AGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL----P-A 76 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~--~~w~~-~~~~L~--~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l----~-~ 76 (269)
.+++++|+||||..+. ..|.. +...|. ...|+||++|++|||.|..+... .....+++++.++|+.| + .
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~gl~ 117 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFNYP 117 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCcccc-ccHHHHHHHHHHHHHHHHHhhCCC
Confidence 4579999999998654 35765 555553 22599999999999988654322 22355666677777644 1 2
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCC
Q 024316 77 EEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDT 116 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~ 116 (269)
.++++||||||||.++..++.+.|++|.+|+++++..|..
T Consensus 118 l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP~F 157 (442)
T TIGR03230 118 WDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTF 157 (442)
T ss_pred CCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCCcc
Confidence 4799999999999999999988999999999999876643
No 65
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.66 E-value=2.2e-15 Score=118.53 Aligned_cols=217 Identities=14% Similarity=0.131 Sum_probs=129.9
Q ss_pred CceEEEecCCCCCccc--hHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCC--cEEEEE
Q 024316 9 EKHFVLVHGVNHGAWC--WYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEE--KVILVG 84 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~--w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~--~vilVG 84 (269)
.+.+||+||+-++... -..++.+|++.|+.++-+|++|.|.|+..-+. ......|+||-.+++.+.... =.+++|
T Consensus 33 ~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~-Gn~~~eadDL~sV~q~~s~~nr~v~vi~g 111 (269)
T KOG4667|consen 33 TEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYY-GNYNTEADDLHSVIQYFSNSNRVVPVILG 111 (269)
T ss_pred ceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCcccc-CcccchHHHHHHHHHHhccCceEEEEEEe
Confidence 5799999999888764 57789999999999999999999999865321 122344588888888774322 267899
Q ss_pred eChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhH
Q 024316 85 HSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREF 164 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (269)
||=||-++..+|.++++ ++.+|-+++-.. ... .+.++..+. ...|+.. ..+. ...+....+...+
T Consensus 112 HSkGg~Vvl~ya~K~~d-~~~viNcsGRyd--l~~--~I~eRlg~~------~l~~ike--~Gfi--d~~~rkG~y~~rv 176 (269)
T KOG4667|consen 112 HSKGGDVVLLYASKYHD-IRNVINCSGRYD--LKN--GINERLGED------YLERIKE--QGFI--DVGPRKGKYGYRV 176 (269)
T ss_pred ecCccHHHHHHHHhhcC-chheEEcccccc--hhc--chhhhhccc------HHHHHHh--CCce--ecCcccCCcCcee
Confidence 99999999999999887 655554433111 111 111111110 0111110 0000 0000000000001
Q ss_pred HHHHHhcCCCHHhHHHHHHhcCCCccccccccc-cccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEc
Q 024316 165 LTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSK-ESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIK 243 (269)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~ 243 (269)
....++. .+.+ ++.. ... + ..++|+|-++|..|.++|.+.+..+++.+|+-+++++|
T Consensus 177 t~eSlmd------------rLnt------d~h~aclk-I---d~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIE 234 (269)
T KOG4667|consen 177 TEESLMD------------RLNT------DIHEACLK-I---DKQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIE 234 (269)
T ss_pred cHHHHHH------------HHhc------hhhhhhcC-c---CccCceEEEeccCCceeechhHHHHHHhccCCceEEec
Confidence 0011110 0000 0000 000 1 12789999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHH
Q 024316 244 GGDHMAMLSDPQKLCDCLSQI 264 (269)
Q Consensus 244 ~~gH~~~~e~p~~~~~~l~~f 264 (269)
|+.|..-. .-..++.+...|
T Consensus 235 gADHnyt~-~q~~l~~lgl~f 254 (269)
T KOG4667|consen 235 GADHNYTG-HQSQLVSLGLEF 254 (269)
T ss_pred CCCcCccc-hhhhHhhhccee
Confidence 99997643 334444444433
No 66
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.66 E-value=3.8e-16 Score=132.42 Aligned_cols=109 Identities=21% Similarity=0.229 Sum_probs=79.6
Q ss_pred CCCCceEEEecCCCCCc-cchHHHH-H-HHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC----C-CC
Q 024316 6 GMEEKHFVLVHGVNHGA-WCWYKLK-A-RLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL----P-AE 77 (269)
Q Consensus 6 ~~~g~~ivlvHG~~~~~-~~w~~~~-~-~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l----~-~~ 77 (269)
..+++++|+||||..+. ..|...+ . .|...+|+||++|++|++.+... ....++...++++.++|+.+ + ..
T Consensus 33 ~~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~-~a~~~~~~v~~~la~~l~~L~~~~g~~~ 111 (275)
T cd00707 33 NPSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYP-QAVNNTRVVGAELAKFLDFLVDNTGLSL 111 (275)
T ss_pred CCCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChH-HHHHhHHHHHHHHHHHHHHHHHhcCCCh
Confidence 34578999999999887 6786544 3 34445799999999998443221 12234555555555555543 1 23
Q ss_pred CcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCC
Q 024316 78 EKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPD 115 (269)
Q Consensus 78 ~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~ 115 (269)
++++||||||||.++..++.+.|++|.+++.+++..|.
T Consensus 112 ~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~ 149 (275)
T cd00707 112 ENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPL 149 (275)
T ss_pred HHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCccc
Confidence 68999999999999999999999999999999987664
No 67
>PRK11460 putative hydrolase; Provisional
Probab=99.65 E-value=8.5e-15 Score=121.32 Aligned_cols=175 Identities=12% Similarity=0.029 Sum_probs=111.8
Q ss_pred CCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcc----------ccc---ccchHHhHHHHHHHHHh
Q 024316 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKR----------IED---VHTFHAYSEPLMEVLAS 73 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~----------~~~---~~~~~~~~~~l~~~i~~ 73 (269)
...+.|||+||++.+...|..+++.|.+.++.+..++.+|...+... ... ..++.+..+.+.+.++.
T Consensus 14 ~~~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 93 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRY 93 (232)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999876655555555554322100 000 11223333334444332
Q ss_pred ----CC-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCccccccccccc
Q 024316 74 ----LP-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQC 148 (269)
Q Consensus 74 ----l~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (269)
.+ ..++++|+|||+||.++..++.++|+.+.++|.+++..+ . .
T Consensus 94 ~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~---------------~--------------~--- 141 (232)
T PRK11460 94 WQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA---------------S--------------L--- 141 (232)
T ss_pred HHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc---------------c--------------c---
Confidence 22 124799999999999998888788877766654432100 0 0
Q ss_pred CCCCCCccccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHH
Q 024316 149 DASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQH 228 (269)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~ 228 (269)
+ . . . . .+.|.++++|++|.++|.+.++
T Consensus 142 -~-~------------------------~---------~---------~---------~~~pvli~hG~~D~vvp~~~~~ 168 (232)
T PRK11460 142 -P-E------------------------T---------A---------P---------TATTIHLIHGGEDPVIDVAHAV 168 (232)
T ss_pred -c-c------------------------c---------c---------c---------CCCcEEEEecCCCCccCHHHHH
Confidence 0 0 0 0 0 1568899999999999999988
Q ss_pred HHHHhCC----CCeEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 229 WMIQNYP----VNEVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 229 ~~~~~~~----~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
++.+.+. ..++++++++||....+.-+.+.+.|.+++.
T Consensus 169 ~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 169 AAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTVP 210 (232)
T ss_pred HHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHcc
Confidence 7766432 3467788999999865555555555555553
No 68
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.63 E-value=3e-14 Score=121.06 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=76.1
Q ss_pred CCceEEEecCCCCCccchHHH--HHHH-HhCCCeEEEeCC--CCCCCCCcc-------------------cccccchHH-
Q 024316 8 EEKHFVLVHGVNHGAWCWYKL--KARL-VAGGHRVTAVDL--AASGINMKR-------------------IEDVHTFHA- 62 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~--~~~L-~~~g~~Via~Dl--~G~G~S~~~-------------------~~~~~~~~~- 62 (269)
+.|+|+|+||++.+...|... +..| ++.|+.|++||. +|+|.+... ....+++.+
T Consensus 41 ~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~ 120 (275)
T TIGR02821 41 PVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSY 120 (275)
T ss_pred CCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHH
Confidence 468999999999988888542 3344 446899999998 555543210 001123333
Q ss_pred hHHHHHHHHHhC-C-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 63 YSEPLMEVLASL-P-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 63 ~~~~l~~~i~~l-~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
+++++..++++. + ..++++++||||||.++..++.++|+.+++++++++.
T Consensus 121 ~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~ 172 (275)
T TIGR02821 121 IVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPI 172 (275)
T ss_pred HHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCc
Confidence 467888888872 1 2358999999999999999999999999999988764
No 69
>PLN02442 S-formylglutathione hydrolase
Probab=99.60 E-value=1.6e-13 Score=117.09 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=71.7
Q ss_pred CCCceEEEecCCCCCccchHH---HHHHHHhCCCeEEEeCCCCCCC-----CCc---c-c---------c-----c--cc
Q 024316 7 MEEKHFVLVHGVNHGAWCWYK---LKARLVAGGHRVTAVDLAASGI-----NMK---R-I---------E-----D--VH 58 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~w~~---~~~~L~~~g~~Via~Dl~G~G~-----S~~---~-~---------~-----~--~~ 58 (269)
.+-|.|+|+||++.+...|.. +...+...|+.|+.||.+++|. ++. . . . . .+
T Consensus 45 ~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (283)
T PLN02442 45 GKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDY 124 (283)
T ss_pred CCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhh
Confidence 345799999999988877754 3356667799999999987762 110 0 0 0 0 00
Q ss_pred chHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 59 TFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 59 ~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
-.+++.+.+.+..+.+ ..++++|+||||||..+..++.++|+++++++.+++.
T Consensus 125 ~~~~l~~~i~~~~~~~-~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~ 177 (283)
T PLN02442 125 VVKELPKLLSDNFDQL-DTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPI 177 (283)
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCc
Confidence 1222223333333334 3468999999999999999999999999999888764
No 70
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.60 E-value=2.6e-14 Score=116.85 Aligned_cols=195 Identities=14% Similarity=0.062 Sum_probs=109.6
Q ss_pred chHHHHHHHHhCCCeEEEeCCCCCCCCCccc-------ccccchHHhHHHHHHHHHhCC-CCCcEEEEEeChhhHHHHHH
Q 024316 24 CWYKLKARLVAGGHRVTAVDLAASGINMKRI-------EDVHTFHAYSEPLMEVLASLP-AEEKVILVGHSLGGVTLALA 95 (269)
Q Consensus 24 ~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~l~-~~~~vilVGHSmGG~i~~~~ 95 (269)
.|+.....|++.||.|+.+|.||.+.....- .....++|..+.+..+++.-. ..+++.++|||+||.++..+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 4556677888899999999999987432210 011234444444444444321 12579999999999999998
Q ss_pred hhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHHHHhcCCCH
Q 024316 96 ADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPP 175 (269)
Q Consensus 96 a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (269)
+.++|++++++|..++....... ... . .. +....+.........+
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~---------~~~-----~-~~--------------------~~~~~~~~~~~~~~~~ 126 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSY---------YGT-----T-DI--------------------YTKAEYLEYGDPWDNP 126 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCS---------BHH-----T-CC--------------------HHHGHHHHHSSTTTSH
T ss_pred hcccceeeeeeeccceecchhcc---------ccc-----c-cc--------------------cccccccccCccchhh
Confidence 88899999999888764221100 000 0 00 0000000000000011
Q ss_pred HhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhC----CCCeEEEEcCCCCCCC-
Q 024316 176 EDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY----PVNEVMEIKGGDHMAM- 250 (269)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~- 250 (269)
+......... . +... ..+.|+|+++|++|..+|++.+..+.+.+ ...+++++|++||...
T Consensus 127 ~~~~~~s~~~----~----~~~~-------~~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~ 191 (213)
T PF00326_consen 127 EFYRELSPIS----P----ADNV-------QIKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGN 191 (213)
T ss_dssp HHHHHHHHGG----G----GGGC-------GGGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTS
T ss_pred hhhhhhcccc----c----cccc-------cCCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCC
Confidence 1111000000 0 0000 03789999999999999999887765432 3478899999999554
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 024316 251 LSDPQKLCDCLSQISLKY 268 (269)
Q Consensus 251 ~e~p~~~~~~l~~f~~~~ 268 (269)
.+...+..+.+.+|+++|
T Consensus 192 ~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 192 PENRRDWYERILDFFDKY 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 344467778888888874
No 71
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=6.3e-14 Score=113.27 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=136.2
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHH-hCCCCCcEEEEEeCh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA-SLPAEEKVILVGHSL 87 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~-~l~~~~~vilVGHSm 87 (269)
...+++.|=.|.++..|+.+...|.. -..++++.+||+|..-..+ -..+++++++.+...|. -. .+++..+.||||
T Consensus 7 ~~~L~cfP~AGGsa~~fr~W~~~lp~-~iel~avqlPGR~~r~~ep-~~~di~~Lad~la~el~~~~-~d~P~alfGHSm 83 (244)
T COG3208 7 RLRLFCFPHAGGSASLFRSWSRRLPA-DIELLAVQLPGRGDRFGEP-LLTDIESLADELANELLPPL-LDAPFALFGHSM 83 (244)
T ss_pred CceEEEecCCCCCHHHHHHHHhhCCc-hhheeeecCCCcccccCCc-ccccHHHHHHHHHHHhcccc-CCCCeeecccch
Confidence 34677777777788888888888865 4899999999998653322 34699999999999998 35 557999999999
Q ss_pred hhHHHHHHhhhC---CcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCcccccc-chh
Q 024316 88 GGVTLALAADKF---PHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLF-GRE 163 (269)
Q Consensus 88 GG~i~~~~a~~~---p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 163 (269)
||+++...|.+. .-...+|.+++...|..... ..+... .-..++.. +.... .. + ...+ +++
T Consensus 84 Ga~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~-----~~i~~~-----~D~~~l~~-l~~lg--G~-p-~e~led~E 148 (244)
T COG3208 84 GAMLAFEVARRLERAGLPPRALFISGCRAPHYDRG-----KQIHHL-----DDADFLAD-LVDLG--GT-P-PELLEDPE 148 (244)
T ss_pred hHHHHHHHHHHHHHcCCCcceEEEecCCCCCCccc-----CCccCC-----CHHHHHHH-HHHhC--CC-C-hHHhcCHH
Confidence 999999887542 33466777776555511100 000000 00111111 01000 00 0 0001 111
Q ss_pred HHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC-CCeEEEE
Q 024316 164 FLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP-VNEVMEI 242 (269)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~i 242 (269)
++ + +..-.++.+....+.++ +......++|+..+.|++|..+..+....-.+... ..+++++
T Consensus 149 l~-~------------l~LPilRAD~~~~e~Y~----~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~f 211 (244)
T COG3208 149 LM-A------------LFLPILRADFRALESYR----YPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVF 211 (244)
T ss_pred HH-H------------HHHHHHHHHHHHhcccc----cCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEe
Confidence 11 1 11111111000000010 01112347899999999999999888775555544 6689999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 243 KGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 243 ~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
+ .||+...++.++|.+.|.+.+.
T Consensus 212 d-GgHFfl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 212 D-GGHFFLNQQREEVLARLEQHLA 234 (244)
T ss_pred c-CcceehhhhHHHHHHHHHHHhh
Confidence 8 9999999999999999988775
No 72
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.59 E-value=9.7e-14 Score=114.36 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=91.6
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhh
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGG 89 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG 89 (269)
.+||=+||-+.|...++-+.+.|.+.|.|+|.+++||+|.++...+..|+-.+-...+.++++.++..++++.+|||.|+
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSrGc 115 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKLIFLGHSRGC 115 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCCCceEEEEeccch
Confidence 38999999999999999999999999999999999999999988777789999999999999999666789999999999
Q ss_pred HHHHHHhhhCCcccceeEEEecc
Q 024316 90 VTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 90 ~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
-.+...|..+| ..++++++++
T Consensus 116 enal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 116 ENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred HHHHHHHhcCc--cceEEEecCC
Confidence 98888887774 6799999875
No 73
>PLN00021 chlorophyllase
Probab=99.56 E-value=2.7e-14 Score=122.98 Aligned_cols=103 Identities=22% Similarity=0.149 Sum_probs=73.7
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC------CCCCcEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL------PAEEKVI 81 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l------~~~~~vi 81 (269)
..++|||+||++.+...|..+++.|+++||.|+++|++|++.+.... ...+..+..+.+.+.++.+ ...+++.
T Consensus 51 ~~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~~~~~-~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~ 129 (313)
T PLN00021 51 TYPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGPDGTD-EIKDAAAVINWLSSGLAAVLPEGVRPDLSKLA 129 (313)
T ss_pred CCCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCCCchh-hHHHHHHHHHHHHhhhhhhcccccccChhheE
Confidence 36899999999999999999999999999999999999975432111 1112223333333322221 0225799
Q ss_pred EEEeChhhHHHHHHhhhCCc-----ccceeEEEec
Q 024316 82 LVGHSLGGVTLALAADKFPH-----KISVAVFVTA 111 (269)
Q Consensus 82 lVGHSmGG~i~~~~a~~~p~-----~v~~lvli~~ 111 (269)
|+||||||.++..+|.++++ +|+++|++++
T Consensus 130 l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldP 164 (313)
T PLN00021 130 LAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDP 164 (313)
T ss_pred EEEECcchHHHHHHHhhccccccccceeeEEeecc
Confidence 99999999999998877774 5778887765
No 74
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.56 E-value=2.2e-13 Score=110.88 Aligned_cols=188 Identities=17% Similarity=0.189 Sum_probs=127.7
Q ss_pred CceEEEecCCCCCccchHHHHHHHHh-CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC-CCCcEEEEEeC
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVA-GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP-AEEKVILVGHS 86 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~-~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~-~~~~vilVGHS 86 (269)
..+|++.||.-..-.--..+.-.|.. .+.+|+++|.+|+|.|...+.. ..+.+.+..+-+.+++.. ..++++|+|||
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE-~n~y~Di~avye~Lr~~~g~~~~Iil~G~S 138 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSE-RNLYADIKAVYEWLRNRYGSPERIILYGQS 138 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCCccc-ccchhhHHHHHHHHHhhcCCCceEEEEEec
Confidence 37999999994444322222223322 3689999999999999876543 355666677777777663 35789999999
Q ss_pred hhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHH
Q 024316 87 LGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLT 166 (269)
Q Consensus 87 mGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (269)
||...+..+|.+.| ++++||.++... +.+ + +... . .. ...++ .+.
T Consensus 139 iGt~~tv~Lasr~~--~~alVL~SPf~S--~~r---v---~~~~----------~----------~~---~~~~d-~f~- 183 (258)
T KOG1552|consen 139 IGTVPTVDLASRYP--LAAVVLHSPFTS--GMR---V---AFPD----------T----------KT---TYCFD-AFP- 183 (258)
T ss_pred CCchhhhhHhhcCC--cceEEEeccchh--hhh---h---hccC----------c----------ce---EEeec-ccc-
Confidence 99999888888888 999999986422 110 0 0000 0 00 00000 000
Q ss_pred HHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCC-eEEEEcCC
Q 024316 167 IKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVN-EVMEIKGG 245 (269)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~i~~~ 245 (269)
. .+ .....++|+|+++|++|.++|....+++.++.+.. +-.++.|+
T Consensus 184 ----~--------------------i~---------kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~ 230 (258)
T KOG1552|consen 184 ----N--------------------IE---------KISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGA 230 (258)
T ss_pred ----c--------------------cC---------cceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecC
Confidence 0 00 01113789999999999999999999999887755 45567899
Q ss_pred CCCCCCCCcHHHHHHHHHHHH
Q 024316 246 DHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 246 gH~~~~e~p~~~~~~l~~f~~ 266 (269)
||.- +|...++.+.+.+|+.
T Consensus 231 gH~~-~~~~~~yi~~l~~f~~ 250 (258)
T KOG1552|consen 231 GHND-IELYPEYIEHLRRFIS 250 (258)
T ss_pred CCcc-cccCHHHHHHHHHHHH
Confidence 9965 7888888888888875
No 75
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.52 E-value=3e-13 Score=106.45 Aligned_cols=154 Identities=25% Similarity=0.363 Sum_probs=100.2
Q ss_pred EEEecCCCCCc-cchHHHHH-HHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhh
Q 024316 12 FVLVHGVNHGA-WCWYKLKA-RLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGG 89 (269)
Q Consensus 12 ivlvHG~~~~~-~~w~~~~~-~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG 89 (269)
|++|||++.+. ..|+...+ .|... ++|-.+|+ +..+++++.+.|.+.|.... ++++|||||+|.
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~-----------~~P~~~~W~~~l~~~i~~~~--~~~ilVaHSLGc 66 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW-----------DNPDLDEWVQALDQAIDAID--EPTILVAHSLGC 66 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC-------------TS--HHHHHHHHHHCCHC-T--TTEEEEEETHHH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc-----------CCCCHHHHHHHHHHHHhhcC--CCeEEEEeCHHH
Confidence 68999998775 56877444 55443 78888776 23577999999999988763 689999999999
Q ss_pred HHHHHHh-hhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHHH
Q 024316 90 VTLALAA-DKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIK 168 (269)
Q Consensus 90 ~i~~~~a-~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (269)
..+..++ .+...+|.+++|++++.+. . . .... . .+. .|.+
T Consensus 67 ~~~l~~l~~~~~~~v~g~lLVAp~~~~---~---~-~~~~----------~----~~~------------~f~~------ 107 (171)
T PF06821_consen 67 LTALRWLAEQSQKKVAGALLVAPFDPD---D---P-EPFP----------P----ELD------------GFTP------ 107 (171)
T ss_dssp HHHHHHHHHTCCSSEEEEEEES--SCG---C---H-HCCT----------C----GGC------------CCTT------
T ss_pred HHHHHHHhhcccccccEEEEEcCCCcc---c---c-cchh----------h----hcc------------cccc------
Confidence 9888887 7788999999999875321 0 0 0000 0 000 0000
Q ss_pred HhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCC
Q 024316 169 IYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHM 248 (269)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~ 248 (269)
.+.+ ...+|+++|.+++|..+|.+.++++++.. +++++.++++||+
T Consensus 108 -----~p~~----------------------------~l~~~~~viaS~nDp~vp~~~a~~~A~~l-~a~~~~~~~~GHf 153 (171)
T PF06821_consen 108 -----LPRD----------------------------PLPFPSIVIASDNDPYVPFERAQRLAQRL-GAELIILGGGGHF 153 (171)
T ss_dssp -----SHCC----------------------------HHHCCEEEEEETTBSSS-HHHHHHHHHHH-T-EEEEETS-TTS
T ss_pred -----Cccc----------------------------ccCCCeEEEEcCCCCccCHHHHHHHHHHc-CCCeEECCCCCCc
Confidence 0000 01456689999999999999999999886 4789999999998
Q ss_pred CCCC
Q 024316 249 AMLS 252 (269)
Q Consensus 249 ~~~e 252 (269)
.--+
T Consensus 154 ~~~~ 157 (171)
T PF06821_consen 154 NAAS 157 (171)
T ss_dssp SGGG
T ss_pred cccc
Confidence 7554
No 76
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.52 E-value=6.2e-14 Score=131.84 Aligned_cols=89 Identities=22% Similarity=0.243 Sum_probs=73.2
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcc---------cccc-------------cchHHhHHHH
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKR---------IEDV-------------HTFHAYSEPL 67 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~---------~~~~-------------~~~~~~~~~l 67 (269)
++|||+||++.+...|..+++.|.+.||+|+++|+||||.|... .... ..+..++.|+
T Consensus 450 P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dl 529 (792)
T TIGR03502 450 PVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSILDL 529 (792)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHHHHH
Confidence 48999999999999999999999888999999999999998432 1000 2678888999
Q ss_pred HHHHHhCC---------------CCCcEEEEEeChhhHHHHHHhhh
Q 024316 68 MEVLASLP---------------AEEKVILVGHSLGGVTLALAADK 98 (269)
Q Consensus 68 ~~~i~~l~---------------~~~~vilVGHSmGG~i~~~~a~~ 98 (269)
..+...+. ...+++++||||||+++..++..
T Consensus 530 l~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 530 LGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 88888773 03589999999999988887654
No 77
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.51 E-value=4.7e-13 Score=121.27 Aligned_cols=102 Identities=12% Similarity=0.193 Sum_probs=84.4
Q ss_pred CceEEEecCCCCCccch-----HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC---CCCCcE
Q 024316 9 EKHFVLVHGVNHGAWCW-----YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL---PAEEKV 80 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w-----~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l---~~~~~v 80 (269)
..|||+|+.+-.....| +.++++|.++||+|+.+|.++-+.+++ ..++++|++.+.+.|++. .+.+++
T Consensus 215 ~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~r----~~~ldDYv~~i~~Ald~V~~~tG~~~v 290 (560)
T TIGR01839 215 ARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAHR----EWGLSTYVDALKEAVDAVRAITGSRDL 290 (560)
T ss_pred CCcEEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhhc----CCCHHHHHHHHHHHHHHHHHhcCCCCe
Confidence 57999999999888888 579999999999999999998766642 358899998888888765 234689
Q ss_pred EEEEeChhhHHHHH----HhhhCCc-ccceeEEEeccCC
Q 024316 81 ILVGHSLGGVTLAL----AADKFPH-KISVAVFVTAFMP 114 (269)
Q Consensus 81 ilVGHSmGG~i~~~----~a~~~p~-~v~~lvli~~~~~ 114 (269)
.++||||||.++++ +++++++ +|+.|+++.+...
T Consensus 291 nl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplD 329 (560)
T TIGR01839 291 NLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLD 329 (560)
T ss_pred eEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccc
Confidence 99999999997775 6677775 8999999987543
No 78
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.47 E-value=1.3e-13 Score=94.17 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=58.3
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHH
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~ 72 (269)
...|+++||++.++..|.++++.|++.||.|+++|+||||.|+.......+++++++|+..+++
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 4589999999999999999999999999999999999999998755556799999999998874
No 79
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.46 E-value=1.5e-12 Score=132.26 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=87.3
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
++++++|+||++.++++|..+.+.|.. +++|+++|+||+|.+.. ..++++++++++.+.++++...++++|+||||
T Consensus 1067 ~~~~l~~lh~~~g~~~~~~~l~~~l~~-~~~v~~~~~~g~~~~~~---~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~ 1142 (1296)
T PRK10252 1067 DGPTLFCFHPASGFAWQFSVLSRYLDP-QWSIYGIQSPRPDGPMQ---TATSLDEVCEAHLATLLEQQPHGPYHLLGYSL 1142 (1296)
T ss_pred CCCCeEEecCCCCchHHHHHHHHhcCC-CCcEEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHhhCCCCCEEEEEech
Confidence 368999999999999999999999955 69999999999986632 24699999999999999863346899999999
Q ss_pred hhHHHHHHhhh---CCcccceeEEEeccC
Q 024316 88 GGVTLALAADK---FPHKISVAVFVTAFM 113 (269)
Q Consensus 88 GG~i~~~~a~~---~p~~v~~lvli~~~~ 113 (269)
||.++..+|.+ .++++..++++++..
T Consensus 1143 Gg~vA~e~A~~l~~~~~~v~~l~l~~~~~ 1171 (1296)
T PRK10252 1143 GGTLAQGIAARLRARGEEVAFLGLLDTWP 1171 (1296)
T ss_pred hhHHHHHHHHHHHHcCCceeEEEEecCCC
Confidence 99999988864 578999999998643
No 80
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.45 E-value=3.9e-12 Score=119.56 Aligned_cols=206 Identities=18% Similarity=0.086 Sum_probs=124.1
Q ss_pred ceEEEecCCCCCccc--hHHHHHHHHhCCCeEEEeCCCCCCCCCcc-------cccccchHHhHHHHHHHHHhCCCC--C
Q 024316 10 KHFVLVHGVNHGAWC--WYKLKARLVAGGHRVTAVDLAASGINMKR-------IEDVHTFHAYSEPLMEVLASLPAE--E 78 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~--w~~~~~~L~~~g~~Via~Dl~G~G~S~~~-------~~~~~~~~~~~~~l~~~i~~l~~~--~ 78 (269)
|.||++||.+.+... |...+..|+..||-|+.++.||.+.-.+. .-....++|+.+.+. ++++.+.. +
T Consensus 395 P~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ 473 (620)
T COG1506 395 PLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPE 473 (620)
T ss_pred CEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH-HHHhCCCcChH
Confidence 689999999866654 66677788899999999999986432110 112236667666666 66666433 3
Q ss_pred cEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCcccc
Q 024316 79 KVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISM 158 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (269)
++.+.|||+||..+..++.+.| ++++.|.+.+...... . +... ...+.
T Consensus 474 ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~-----~---~~~~------~~~~~----------------- 521 (620)
T COG1506 474 RIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLL-----Y---FGES------TEGLR----------------- 521 (620)
T ss_pred HeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhh-----h---cccc------chhhc-----------------
Confidence 7999999999999999888877 7777765554222100 0 0000 00000
Q ss_pred ccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhC----
Q 024316 159 LFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY---- 234 (269)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~---- 234 (269)
+..+. ..... .. +.. .+...+ +.......+.|+|+|+|++|.-+|.+.+.++.+.+
T Consensus 522 -~~~~~---~~~~~-~~-~~~---~~~~~s-----------p~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g 581 (620)
T COG1506 522 -FDPEE---NGGGP-PE-DRE---KYEDRS-----------PIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKG 581 (620)
T ss_pred -CCHHH---hCCCc-cc-ChH---HHHhcC-----------hhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcC
Confidence 00000 00000 00 000 000000 00011123789999999999999999888776543
Q ss_pred CCCeEEEEcCCCCCCCC-CCcHHHHHHHHHHHHhh
Q 024316 235 PVNEVMEIKGGDHMAML-SDPQKLCDCLSQISLKY 268 (269)
Q Consensus 235 ~~~~~~~i~~~gH~~~~-e~p~~~~~~l~~f~~~~ 268 (269)
...+++++|+.||.+-- ++-..+.+.+.+|++++
T Consensus 582 ~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~ 616 (620)
T COG1506 582 KPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRH 616 (620)
T ss_pred ceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHH
Confidence 35578899999999877 23345556666777653
No 81
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.42 E-value=1.7e-12 Score=106.08 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=70.5
Q ss_pred CceEEEecCCCCCccchH---HHHHHHHhCCCeEEEeCCCCCCCCCccc------------ccccchHHhHHHHHHHHHh
Q 024316 9 EKHFVLVHGVNHGAWCWY---KLKARLVAGGHRVTAVDLAASGINMKRI------------EDVHTFHAYSEPLMEVLAS 73 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~---~~~~~L~~~g~~Via~Dl~G~G~S~~~~------------~~~~~~~~~~~~l~~~i~~ 73 (269)
-+.||++||.+.+...|. .+...+.+.||.|++||.+|+|.+.... ....++.++++.+. +.
T Consensus 13 ~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~ 89 (212)
T TIGR01840 13 RALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVK---AN 89 (212)
T ss_pred CCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHH---Hh
Confidence 579999999998877665 2445555679999999999997543211 01112222222222 22
Q ss_pred CC-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccC
Q 024316 74 LP-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 74 l~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
.. ..++++|+||||||.++..++.++|+++.+++.+++..
T Consensus 90 ~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 90 YSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred cCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 21 12489999999999999999989999999998888643
No 82
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.39 E-value=2.5e-11 Score=99.49 Aligned_cols=176 Identities=17% Similarity=0.204 Sum_probs=102.9
Q ss_pred CCceEEEecCCCCCccchHHHHH-HHHhCCCeEEEeCCCC------CCC---C-----Cccc---ccccchHHhHHHHHH
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKA-RLVAGGHRVTAVDLAA------SGI---N-----MKRI---EDVHTFHAYSEPLME 69 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~-~L~~~g~~Via~Dl~G------~G~---S-----~~~~---~~~~~~~~~~~~l~~ 69 (269)
..+.|||+||++.+...|..+.. .+.....+++.+.-|- .|. + .... .+...+...++.|.+
T Consensus 13 ~~~lvi~LHG~G~~~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~~ 92 (216)
T PF02230_consen 13 AKPLVILLHGYGDSEDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERLDE 92 (216)
T ss_dssp -SEEEEEE--TTS-HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCcchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHHHH
Confidence 35799999999999977777665 2223345777775542 222 1 0011 012244555555666
Q ss_pred HHHhC---C-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccc
Q 024316 70 VLASL---P-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQF 145 (269)
Q Consensus 70 ~i~~l---~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (269)
+|+.. + ..++++|.|.|.||+++..++.++|+++.++|.+++..+... .
T Consensus 93 li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~--------~------------------- 145 (216)
T PF02230_consen 93 LIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPES--------E------------------- 145 (216)
T ss_dssp HHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGC--------C-------------------
T ss_pred HHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccc--------c-------------------
Confidence 66532 1 225799999999999999999999999999999986533100 0
Q ss_pred cccCCCCCCccccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChH
Q 024316 146 SQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQ 225 (269)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~ 225 (269)
. .+ .. . ...+.|.++++|++|.++|.+
T Consensus 146 ----~-----------~~-------------~~-------~------------------~~~~~pi~~~hG~~D~vvp~~ 172 (216)
T PF02230_consen 146 ----L-----------ED-------------RP-------E------------------ALAKTPILIIHGDEDPVVPFE 172 (216)
T ss_dssp ----C-----------HC-------------CH-------C------------------CCCTS-EEEEEETT-SSSTHH
T ss_pred ----c-----------cc-------------cc-------c------------------ccCCCcEEEEecCCCCcccHH
Confidence 0 00 00 0 001678999999999999999
Q ss_pred HHHHHHHhC----CCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 226 FQHWMIQNY----PVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 226 ~~~~~~~~~----~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
.++...+.+ ...+++.+++.||... .+..+.+.+|+++
T Consensus 173 ~~~~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 173 WAEKTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEK 214 (216)
T ss_dssp HHHHHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhh
Confidence 887765533 2457889999999774 3444557777764
No 83
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.37 E-value=6.3e-12 Score=103.66 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=83.2
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhh
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGG 89 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG 89 (269)
+||+|+|+.+.++..|.++++.|....+.|++++.||++.... ...+++++++...+.|.+....++.+|+|||+||
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~---~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg 77 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRGDDEP---PPDSIEELASRYAEAIRARQPEGPYVLAGWSFGG 77 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSCTTSH---EESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCCCCCC---CCCCHHHHHHHHHHHhhhhCCCCCeeehccCccH
Confidence 4899999999999999999999954238999999999983332 2359999999999999876333499999999999
Q ss_pred HHHHHHhhh---CCcccceeEEEeccCCC
Q 024316 90 VTLALAADK---FPHKISVAVFVTAFMPD 115 (269)
Q Consensus 90 ~i~~~~a~~---~p~~v~~lvli~~~~~~ 115 (269)
.++..+|.+ ....+..|+++++..|.
T Consensus 78 ~lA~E~A~~Le~~G~~v~~l~liD~~~p~ 106 (229)
T PF00975_consen 78 ILAFEMARQLEEAGEEVSRLILIDSPPPS 106 (229)
T ss_dssp HHHHHHHHHHHHTT-SESEEEEESCSSTT
T ss_pred HHHHHHHHHHHHhhhccCceEEecCCCCC
Confidence 999988754 35669999999976553
No 84
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.35 E-value=1.5e-11 Score=103.89 Aligned_cols=108 Identities=15% Similarity=0.263 Sum_probs=90.2
Q ss_pred ceEEEecCCCCCccchHHHHHHHHh---CCCeEEEeCCCCCCCCCcc-----cccccchHHhHHHHHHHHHhC-C----C
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVA---GGHRVTAVDLAASGINMKR-----IEDVHTFHAYSEPLMEVLASL-P----A 76 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~---~g~~Via~Dl~G~G~S~~~-----~~~~~~~~~~~~~l~~~i~~l-~----~ 76 (269)
..||||.|.+.-...|.+++..|.+ .++.|+++.+.||-.++.. ....+++++.++.-.++|++. . .
T Consensus 3 ~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~~ 82 (266)
T PF10230_consen 3 PLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNKP 82 (266)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcCC
Confidence 4789999999999999999998863 3789999999999776543 345789999999888888875 2 3
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCC---cccceeEEEeccCCCCC
Q 024316 77 EEKVILVGHSLGGVTLALAADKFP---HKISVAVFVTAFMPDTT 117 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p---~~v~~lvli~~~~~~~~ 117 (269)
..+++|+|||+|++++.....+.+ .+|.+.+++.|+.....
T Consensus 83 ~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia 126 (266)
T PF10230_consen 83 NVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIA 126 (266)
T ss_pred CCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcccccc
Confidence 457999999999999999998888 78999999987654433
No 85
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.35 E-value=3.9e-11 Score=98.44 Aligned_cols=165 Identities=20% Similarity=0.099 Sum_probs=98.5
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCC-CCc-cccccc--------chHHhHHHHH---HHHHhC
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGI-NMK-RIEDVH--------TFHAYSEPLM---EVLASL 74 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~-S~~-~~~~~~--------~~~~~~~~l~---~~i~~l 74 (269)
+.+.||++|+++.-...-+.++..|++.||.|++||+-+-.. ... ...... ..+...+++. +.+++.
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~ 92 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQ 92 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCT
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 468999999987555566788999999999999999865433 111 111000 1234455554 444444
Q ss_pred C--CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCC
Q 024316 75 P--AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASN 152 (269)
Q Consensus 75 ~--~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (269)
+ ..+++.+||.|+||.++..+|.+. +.+++.|..-+ . .. . .
T Consensus 93 ~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg-----~--------~~----------------------~-~ 135 (218)
T PF01738_consen 93 PEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG-----G--------SP----------------------P-P 135 (218)
T ss_dssp TTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES------S--------SS----------------------G-G
T ss_pred cccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC-----C--------CC----------------------C-C
Confidence 2 124899999999999988887665 57777664422 0 00 0 0
Q ss_pred CCccccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHH
Q 024316 153 PSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQ 232 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~ 232 (269)
... ... ...++|+++++|++|..+|++..+.+.+
T Consensus 136 ---------~~~-----------~~~--------------------------~~~~~P~l~~~g~~D~~~~~~~~~~~~~ 169 (218)
T PF01738_consen 136 ---------PPL-----------EDA--------------------------PKIKAPVLILFGENDPFFPPEEVEALEE 169 (218)
T ss_dssp ---------GHH-----------HHG--------------------------GG--S-EEEEEETT-TTS-HHHHHHHHH
T ss_pred ---------cch-----------hhh--------------------------cccCCCEeecCccCCCCCChHHHHHHHH
Confidence 000 000 0027799999999999999987665554
Q ss_pred h----CCCCeEEEEcCCCCCCCCCCcH
Q 024316 233 N----YPVNEVMEIKGGDHMAMLSDPQ 255 (269)
Q Consensus 233 ~----~~~~~~~~i~~~gH~~~~e~p~ 255 (269)
. ....++++++|++|-.+.....
T Consensus 170 ~l~~~~~~~~~~~y~ga~HgF~~~~~~ 196 (218)
T PF01738_consen 170 ALKAAGVDVEVHVYPGAGHGFANPSRP 196 (218)
T ss_dssp HHHCTTTTEEEEEETT--TTTTSTTST
T ss_pred HHHhcCCcEEEEECCCCcccccCCCCc
Confidence 3 3566899999999998877554
No 86
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.34 E-value=1.9e-11 Score=104.48 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=140.8
Q ss_pred ceEEEecCCCCCc---c--------chHHHHH---HHHhCCCeEEEeCCCCCC-CCCcc----cc--------cccchHH
Q 024316 10 KHFVLVHGVNHGA---W--------CWYKLKA---RLVAGGHRVTAVDLAASG-INMKR----IE--------DVHTFHA 62 (269)
Q Consensus 10 ~~ivlvHG~~~~~---~--------~w~~~~~---~L~~~g~~Via~Dl~G~G-~S~~~----~~--------~~~~~~~ 62 (269)
..|+++||+..++ . .|+.++- .+--..|.||+.|..|.+ -|..+ +. ..+|+.|
T Consensus 52 NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D 131 (368)
T COG2021 52 NAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRD 131 (368)
T ss_pred ceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHH
Confidence 4799999997633 2 4555443 233346999999999976 34332 22 2458889
Q ss_pred hHHHHHHHHHhCCCCCc-EEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCch--hhhccCccccccCCCCcc
Q 024316 63 YSEPLMEVLASLPAEEK-VILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPS--FVLEQVPYSEKMGKEDDS 139 (269)
Q Consensus 63 ~~~~l~~~i~~l~~~~~-vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 139 (269)
+++.-..++++| +.++ ..+||-||||+-+...+..+|++|+++|.+++........-. .+..+.... -+.
T Consensus 132 ~V~aq~~ll~~L-GI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~------DP~ 204 (368)
T COG2021 132 MVRAQRLLLDAL-GIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEA------DPD 204 (368)
T ss_pred HHHHHHHHHHhc-CcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHh------CCC
Confidence 998888899999 5677 559999999999988888999999999999875442221110 011111110 011
Q ss_pred cccccccccC-CCCCC-ccc------cccchhHHHHHHhcCC-----C----HHhHH----HHH-Hh---cCCCcccc--
Q 024316 140 WLDTQFSQCD-ASNPS-HIS------MLFGREFLTIKIYQLC-----P----PEDLE----LAK-ML---VRPGSMFI-- 192 (269)
Q Consensus 140 ~~~~~~~~~~-~~~~~-~~~------~~~~~~~~~~~~~~~~-----~----~~~~~----~~~-~~---~~~~~~~~-- 192 (269)
|..-.+...- | ..- ... ....+..+.+.+-... . ..... ... .+ +-++.+..
T Consensus 205 ~n~G~Y~~~~~P-~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt 283 (368)
T COG2021 205 WNGGDYYEGTQP-ERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLT 283 (368)
T ss_pred ccCCCccCCCCc-chhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 1110000000 0 000 000 0001111112111100 0 00000 000 00 00111110
Q ss_pred -----ccccccc-cCCC-CCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCe-EEEE-cCCCCCCCCCCcHHHHHHHHH
Q 024316 193 -----DNLSKES-KFSD-EGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNE-VMEI-KGGDHMAMLSDPQKLCDCLSQ 263 (269)
Q Consensus 193 -----~~~~~~~-~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~i-~~~gH~~~~e~p~~~~~~l~~ 263 (269)
.++.... .... ..-.+.|++++--+.|...|++.++++.+.++.+. +++| ...||--++...+.+...|..
T Consensus 284 ~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~ 363 (368)
T COG2021 284 RALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRK 363 (368)
T ss_pred HHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCceEEecCCCCchhhhcchhhhhHHHHH
Confidence 0010000 0000 11236899999999999999999999999988776 6555 668999999999999999999
Q ss_pred HHH
Q 024316 264 ISL 266 (269)
Q Consensus 264 f~~ 266 (269)
|++
T Consensus 364 fL~ 366 (368)
T COG2021 364 FLA 366 (368)
T ss_pred Hhh
Confidence 986
No 87
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.34 E-value=3.1e-12 Score=118.92 Aligned_cols=102 Identities=17% Similarity=0.048 Sum_probs=77.4
Q ss_pred CceEEEecCCCCCcc---chH-HHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC----CCCcE
Q 024316 9 EKHFVLVHGVNHGAW---CWY-KLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP----AEEKV 80 (269)
Q Consensus 9 g~~ivlvHG~~~~~~---~w~-~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~----~~~~v 80 (269)
.++||++||++.+.. .|. .....|.++||.|+++|+||+|.|+..... .+ ...++|+.++|+.+. ...++
T Consensus 22 ~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~-~~-~~~~~D~~~~i~~l~~q~~~~~~v 99 (550)
T TIGR00976 22 VPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDL-LG-SDEAADGYDLVDWIAKQPWCDGNV 99 (550)
T ss_pred CCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEe-cC-cccchHHHHHHHHHHhCCCCCCcE
Confidence 478999999986652 232 245677788999999999999999865322 22 456666666666441 13589
Q ss_pred EEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 81 ILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 81 ilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
.++||||||.++..+|..+|++++++|..++.
T Consensus 100 ~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~ 131 (550)
T TIGR00976 100 GMLGVSYLAVTQLLAAVLQPPALRAIAPQEGV 131 (550)
T ss_pred EEEEeChHHHHHHHHhccCCCceeEEeecCcc
Confidence 99999999999999998889999999988764
No 88
>PRK10162 acetyl esterase; Provisional
Probab=99.33 E-value=3.7e-10 Score=97.99 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=69.9
Q ss_pred CceEEEecCCC---CCccchHHHHHHHHh-CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCC-CCcEEEE
Q 024316 9 EKHFVLVHGVN---HGAWCWYKLKARLVA-GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPA-EEKVILV 83 (269)
Q Consensus 9 g~~ivlvHG~~---~~~~~w~~~~~~L~~-~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~-~~~vilV 83 (269)
.+.||++||.+ .+...|..+...|++ .|+.|+++|.|.......+. ...+..+..+.+.+..++++. .++++|+
T Consensus 81 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~-~~~D~~~a~~~l~~~~~~~~~d~~~i~l~ 159 (318)
T PRK10162 81 QATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARFPQ-AIEEIVAVCCYFHQHAEDYGINMSRIGFA 159 (318)
T ss_pred CCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCCCC-cHHHHHHHHHHHHHhHHHhCCChhHEEEE
Confidence 47899999976 455678888888876 48999999999754433221 112233333444444444532 2589999
Q ss_pred EeChhhHHHHHHhhhC------CcccceeEEEecc
Q 024316 84 GHSLGGVTLALAADKF------PHKISVAVFVTAF 112 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~------p~~v~~lvli~~~ 112 (269)
|||+||.++..++.+. +.++.++|++.+.
T Consensus 160 G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~ 194 (318)
T PRK10162 160 GDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGL 194 (318)
T ss_pred EECHHHHHHHHHHHHHHhcCCCccChhheEEECCc
Confidence 9999999887776432 3578888888764
No 89
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.32 E-value=2.1e-10 Score=91.36 Aligned_cols=86 Identities=23% Similarity=0.405 Sum_probs=63.3
Q ss_pred EEEecCCCCCccchH--HHHHHHHhCC--CeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 12 FVLVHGVNHGAWCWY--KLKARLVAGG--HRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 12 ivlvHG~~~~~~~w~--~~~~~L~~~g--~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
|+.||||.+|+.+.+ .+...+++.+ .+++++|+|- +.+...+.+.++|++. ..+.+.|||+||
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~------------~p~~a~~~l~~~i~~~-~~~~~~liGSSl 68 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP------------FPEEAIAQLEQLIEEL-KPENVVLIGSSL 68 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc------------CHHHHHHHHHHHHHhC-CCCCeEEEEECh
Confidence 799999999998764 4555666543 4677888762 3355567778888877 335699999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccC
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
||..+.++|.+++ +++ |+++|..
T Consensus 69 GG~~A~~La~~~~--~~a-vLiNPav 91 (187)
T PF05728_consen 69 GGFYATYLAERYG--LPA-VLINPAV 91 (187)
T ss_pred HHHHHHHHHHHhC--CCE-EEEcCCC
Confidence 9999999988874 434 7888643
No 90
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.32 E-value=1.4e-11 Score=101.33 Aligned_cols=102 Identities=22% Similarity=0.232 Sum_probs=66.0
Q ss_pred CCceEEEecCCCCCccchHHHHHHHH--------hCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHh----C-
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLV--------AGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS----L- 74 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~--------~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~----l- 74 (269)
+|.|||||||...+...|+.+...+. ...+++++.|+...... .. ..++.+.++.+.+.|+. .
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~-~~---g~~l~~q~~~~~~~i~~i~~~~~ 78 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSA-FH---GRTLQRQAEFLAEAIKYILELYK 78 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccccc-cc---cccHHHHHHHHHHHHHHHHHhhh
Confidence 47899999999888777777766552 11478999998764211 11 11333333322222222 2
Q ss_pred ---CCCCcEEEEEeChhhHHHHHHhhhC---CcccceeEEEeccC
Q 024316 75 ---PAEEKVILVGHSLGGVTLALAADKF---PHKISVAVFVTAFM 113 (269)
Q Consensus 75 ---~~~~~vilVGHSmGG~i~~~~a~~~---p~~v~~lvli~~~~ 113 (269)
...++++||||||||.++-.++... ++.|+.+|.++++.
T Consensus 79 ~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh 123 (225)
T PF07819_consen 79 SNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPH 123 (225)
T ss_pred hccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCC
Confidence 2346899999999999877766443 35799999998643
No 91
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=103.32 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=67.4
Q ss_pred CceEEEecCCCCCcc-ch-HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccc--hHHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 9 EKHFVLVHGVNHGAW-CW-YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHT--FHAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-~w-~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~--~~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
.|.||+.||+-.++. .| +.+...+.++||.|++++.|||+.+.-+....|+ ..+.+..+++.+.+.....+...||
T Consensus 75 ~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r~~~avG 154 (345)
T COG0429 75 KPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYAVG 154 (345)
T ss_pred CceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCCceEEEE
Confidence 469999999965554 35 6688899999999999999999987643211221 1222223333344433457899999
Q ss_pred eChhhH-HHHHHhhhCC-cccceeEEEec
Q 024316 85 HSLGGV-TLALAADKFP-HKISVAVFVTA 111 (269)
Q Consensus 85 HSmGG~-i~~~~a~~~p-~~v~~lvli~~ 111 (269)
.||||. .+.+.++..- -++.+.+.+++
T Consensus 155 ~SLGgnmLa~ylgeeg~d~~~~aa~~vs~ 183 (345)
T COG0429 155 FSLGGNMLANYLGEEGDDLPLDAAVAVSA 183 (345)
T ss_pred ecccHHHHHHHHHhhccCcccceeeeeeC
Confidence 999995 5555554332 34666666664
No 92
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.32 E-value=2.2e-11 Score=96.30 Aligned_cols=200 Identities=15% Similarity=0.211 Sum_probs=130.2
Q ss_pred CCceEEEecCCCCCccchHHHHHH-HHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCC--CCcEEEEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKAR-LVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPA--EEKVILVG 84 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~-L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~--~~~vilVG 84 (269)
+.++++..||.-.+-...-.++.. +.+.+-+|+.++.||+|.|+..+.. ..+.-.++.+++.+-..+. ..+.+|.|
T Consensus 77 S~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~GspsE-~GL~lDs~avldyl~t~~~~dktkivlfG 155 (300)
T KOG4391|consen 77 SRPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGSPSE-EGLKLDSEAVLDYLMTRPDLDKTKIVLFG 155 (300)
T ss_pred CCceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCCccc-cceeccHHHHHHHHhcCccCCcceEEEEe
Confidence 478999999986655544444443 3556779999999999999876633 4666666777776665432 24799999
Q ss_pred eChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhH
Q 024316 85 HSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREF 164 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (269)
-|+||+++...|+++.++++++++-++... +..... . ... + +.-+.
T Consensus 156 rSlGGAvai~lask~~~ri~~~ivENTF~S--------Ip~~~i----------~----~v~---p---------~~~k~ 201 (300)
T KOG4391|consen 156 RSLGGAVAIHLASKNSDRISAIIVENTFLS--------IPHMAI----------P----LVF---P---------FPMKY 201 (300)
T ss_pred cccCCeeEEEeeccchhheeeeeeechhcc--------chhhhh----------h----eec---c---------chhhH
Confidence 999999999989999999999998875321 000000 0 000 0 00122
Q ss_pred HHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCC--CCeEEEE
Q 024316 165 LTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYP--VNEVMEI 242 (269)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~i 242 (269)
+....+. . .|. . .. ..+.-++|.|+|.|..|.++||.+.+.+.+.-| ..++..|
T Consensus 202 i~~lc~k-----n-~~~-----S---------~~----ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eF 257 (300)
T KOG4391|consen 202 IPLLCYK-----N-KWL-----S---------YR----KIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEF 257 (300)
T ss_pred HHHHHHH-----h-hhc-----c---------hh----hhccccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeC
Confidence 2222111 0 000 0 00 011237899999999999999999999887765 3468899
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 243 KGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 243 ~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
|++.|.=-+- -+...++|.+|+.+
T Consensus 258 P~gtHNDT~i-~dGYfq~i~dFlaE 281 (300)
T KOG4391|consen 258 PDGTHNDTWI-CDGYFQAIEDFLAE 281 (300)
T ss_pred CCCccCceEE-eccHHHHHHHHHHH
Confidence 9999964332 25666778888753
No 93
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.31 E-value=3e-10 Score=93.87 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=139.6
Q ss_pred CceEEEecCCCCCccc-hHHHH-----HHHHhCCCeEEEeCCCCC--CCCCcccc-cccchHHhHHHHHHHHHhCCCCCc
Q 024316 9 EKHFVLVHGVNHGAWC-WYKLK-----ARLVAGGHRVTAVDLAAS--GINMKRIE-DVHTFHAYSEPLMEVLASLPAEEK 79 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~-w~~~~-----~~L~~~g~~Via~Dl~G~--G~S~~~~~-~~~~~~~~~~~l~~~i~~l~~~~~ 79 (269)
.+.|+=.|..+.+..+ ++.++ ..+.++ |-|+-+|.||| |....+.+ ...|+++++++|..+++.+ ..+.
T Consensus 46 kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f-~lk~ 123 (326)
T KOG2931|consen 46 KPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF-GLKS 123 (326)
T ss_pred CceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc-Ccce
Confidence 5678889999877654 66543 345454 89999999998 44433433 2469999999999999999 5689
Q ss_pred EEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCcc----ccccCCC-CcccccccccccCCCCCC
Q 024316 80 VILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPY----SEKMGKE-DDSWLDTQFSQCDASNPS 154 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (269)
+|-+|--.|+.|.+.+|.++|++|-+||||++.....+.- .+...++.. .....+. ....+.. .++. +..
T Consensus 124 vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwi-ew~~~K~~s~~l~~~Gmt~~~~d~ll~H---~Fg~-e~~ 198 (326)
T KOG2931|consen 124 VIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWI-EWAYNKVSSNLLYYYGMTQGVKDYLLAH---HFGK-EEL 198 (326)
T ss_pred EEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHH-HHHHHHHHHHHHHhhchhhhHHHHHHHH---Hhcc-ccc
Confidence 9999999999999999999999999999999642221110 011111110 0000000 0000000 0000 000
Q ss_pred ccccccchhHHHHHHhcCCCHHhHHH-HHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHh
Q 024316 155 HISMLFGREFLTIKIYQLCPPEDLEL-AKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQN 233 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~ 233 (269)
....... +.+++.+.+...+..... ..++.+. .++....+-. ....++|++++.|++..-+ +....+..+
T Consensus 199 ~~~~diV-q~Yr~~l~~~~N~~Nl~~fl~ayn~R-----~DL~~~r~~~-~~tlkc~vllvvGd~Sp~~--~~vv~~n~~ 269 (326)
T KOG2931|consen 199 GNNSDIV-QEYRQHLGERLNPKNLALFLNAYNGR-----RDLSIERPKL-GTTLKCPVLLVVGDNSPHV--SAVVECNSK 269 (326)
T ss_pred cccHHHH-HHHHHHHHhcCChhHHHHHHHHhcCC-----CCccccCCCc-CccccccEEEEecCCCchh--hhhhhhhcc
Confidence 0000000 122233333222222211 1111110 1111100000 1134799999999987642 344455555
Q ss_pred C-C-CCeEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 234 Y-P-VNEVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 234 ~-~-~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
+ | .+.+..+.+||=.++.|+|.++++.+.=|+.
T Consensus 270 Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~Flq 304 (326)
T KOG2931|consen 270 LDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQ 304 (326)
T ss_pred cCcccceEEEEcccCCcccccCchHHHHHHHHHHc
Confidence 4 2 4567788899999999999999999988875
No 94
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.31 E-value=9.3e-11 Score=102.10 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=68.3
Q ss_pred CceEEEecCCCCCc-cch-HHHHHHHHhCCCeEEEeCCCCCCCCCccccccc--chHHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 9 EKHFVLVHGVNHGA-WCW-YKLKARLVAGGHRVTAVDLAASGINMKRIEDVH--TFHAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 9 g~~ivlvHG~~~~~-~~w-~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~--~~~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
.+.||++||+..++ +.| +.++..+.+.||||+.++.||+|.|+-+....+ ...+....+++.|.+.-...+...||
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG 204 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAVG 204 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 48999999996555 456 677777788899999999999998875433222 22333333334444432446899999
Q ss_pred eChhhHHHHHHhhhCC--cccceeEEEe
Q 024316 85 HSLGGVTLALAADKFP--HKISVAVFVT 110 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p--~~v~~lvli~ 110 (269)
.||||.+...+..... .++.+.+.+|
T Consensus 205 ~S~Gg~iL~nYLGE~g~~~~l~~a~~v~ 232 (409)
T KOG1838|consen 205 FSMGGNILTNYLGEEGDNTPLIAAVAVC 232 (409)
T ss_pred ecchHHHHHHHhhhccCCCCceeEEEEe
Confidence 9999998777754332 2355555554
No 95
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.20 E-value=5e-10 Score=93.50 Aligned_cols=230 Identities=14% Similarity=0.186 Sum_probs=120.5
Q ss_pred CceEEEecCCCCCccc-hHHHH-----HHHHhCCCeEEEeCCCCCCC--CCcccc-cccchHHhHHHHHHHHHhCCCCCc
Q 024316 9 EKHFVLVHGVNHGAWC-WYKLK-----ARLVAGGHRVTAVDLAASGI--NMKRIE-DVHTFHAYSEPLMEVLASLPAEEK 79 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~-w~~~~-----~~L~~~g~~Via~Dl~G~G~--S~~~~~-~~~~~~~~~~~l~~~i~~l~~~~~ 79 (269)
.++||=.|=.+.+..+ |+.++ ..+.+ .|-|+=+|.|||.. ++.+.+ .-.|+++++++|.++++.+ +.+.
T Consensus 23 kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~-~f~i~Hi~aPGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f-~lk~ 100 (283)
T PF03096_consen 23 KPAILTYHDVGLNHKSCFQGFFNFEDMQEILQ-NFCIYHIDAPGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF-GLKS 100 (283)
T ss_dssp S-EEEEE--TT--HHHHCHHHHCSHHHHHHHT-TSEEEEEE-TTTSTT-----TT-----HHHHHCTHHHHHHHH-T---
T ss_pred CceEEEeccccccchHHHHHHhcchhHHHHhh-ceEEEEEeCCCCCCCcccccccccccCHHHHHHHHHHHHHhC-CccE
Confidence 4688888977766643 65543 34544 69999999999954 333332 2459999999999999999 6789
Q ss_pred EEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccC-CCCCCc---
Q 024316 80 VILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCD-ASNPSH--- 155 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 155 (269)
+|-+|=-.|+.|.+.+|..+|++|.+||||++.....+. ..+...+... | .+...+ . ....
T Consensus 101 vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw-~Ew~~~K~~~----------~---~L~~~gmt-~~~~d~L 165 (283)
T PF03096_consen 101 VIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGW-MEWFYQKLSS----------W---LLYSYGMT-SSVKDYL 165 (283)
T ss_dssp EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---H-HHHHHHHHH--------------------CTT-S-HHHHH
T ss_pred EEEEeeccchhhhhhccccCccceeEEEEEecCCCCccH-HHHHHHHHhc----------c---cccccccc-cchHHhh
Confidence 999999999999999999999999999999975332210 0011111100 0 000000 0 0000
Q ss_pred cccccch----------hHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCC-CCCCCccEEEEEeCCCCCCCh
Q 024316 156 ISMLFGR----------EFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSD-EGYGSVKRVYLVCEEDIGLPK 224 (269)
Q Consensus 156 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~ 224 (269)
..-.|++ +.+++.+.+...+..... +++.+..+.++.. .....+|+|++.|+.... .
T Consensus 166 l~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~----------f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~--~ 233 (283)
T PF03096_consen 166 LWHYFGKEEEENNSDLVQTYRQHLDERINPKNLAL----------FLNSYNSRTDLSIERPSLGCPVLLVVGDNSPH--V 233 (283)
T ss_dssp HHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHH----------HHHHHHT-----SECTTCCS-EEEEEETTSTT--H
T ss_pred hhcccccccccccHHHHHHHHHHHhcCCCHHHHHH----------HHHHHhccccchhhcCCCCCCeEEEEecCCcc--h
Confidence 0000111 111122222222111110 1111111111111 112358999999998765 4
Q ss_pred HHHHHHHHhC-C-CCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 225 QFQHWMIQNY-P-VNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 225 ~~~~~~~~~~-~-~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
+....+.+++ | .+++..+++||=++..|+|.++++.+.=|++=
T Consensus 234 ~~vv~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 234 DDVVEMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp HHHHHHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHH
T ss_pred hhHHHHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHcc
Confidence 4456676665 3 44688889999999999999999999998863
No 96
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.17 E-value=7.7e-11 Score=105.51 Aligned_cols=88 Identities=15% Similarity=0.239 Sum_probs=67.1
Q ss_pred CCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHH----hCCCCCcEEEEEeChhhHHHHHH
Q 024316 20 HGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA----SLPAEEKVILVGHSLGGVTLALA 95 (269)
Q Consensus 20 ~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~----~l~~~~~vilVGHSmGG~i~~~~ 95 (269)
.+.+.|..+++.|++.||.+ ..|++|+|.+-+... ..+++.+++.++|+ +. +.++++||||||||.++..+
T Consensus 105 ~~~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~-g~~kV~LVGHSMGGlva~~f 179 (440)
T PLN02733 105 DEVYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSN---RLPETMDGLKKKLETVYKAS-GGKKVNIISHSMGGLLVKCF 179 (440)
T ss_pred chHHHHHHHHHHHHHcCCcc-CCCcccCCCCccccc---cHHHHHHHHHHHHHHHHHHc-CCCCEEEEEECHhHHHHHHH
Confidence 45688999999999998755 899999999876531 23444444444444 44 45799999999999999988
Q ss_pred hhhCCcc----cceeEEEecc
Q 024316 96 ADKFPHK----ISVAVFVTAF 112 (269)
Q Consensus 96 a~~~p~~----v~~lvli~~~ 112 (269)
+..+|+. |+++|.++++
T Consensus 180 l~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 180 MSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHCCHhHHhHhccEEEECCC
Confidence 8777764 7889999764
No 97
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=99.16 E-value=5.6e-11 Score=96.69 Aligned_cols=96 Identities=27% Similarity=0.268 Sum_probs=54.5
Q ss_pred ceEEEecCCCC-CccchHHHHHHHHhCCCe---EEEeCCCCCCCCCccccccc----chHHhHHHHHHHHHhCCCCCcEE
Q 024316 10 KHFVLVHGVNH-GAWCWYKLKARLVAGGHR---VTAVDLAASGINMKRIEDVH----TFHAYSEPLMEVLASLPAEEKVI 81 (269)
Q Consensus 10 ~~ivlvHG~~~-~~~~w~~~~~~L~~~g~~---Via~Dl~G~G~S~~~~~~~~----~~~~~~~~l~~~i~~l~~~~~vi 81 (269)
.|||||||.+. ....|..+.+.|++.||. |++++.-....+.... ... +..++++.|.++++.. +- +|-
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~-~~~~~~~~~~~l~~fI~~Vl~~T-Ga-kVD 78 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQ-NAHMSCESAKQLRAFIDAVLAYT-GA-KVD 78 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHH-HHHB-HHHHHHHHHHHHHHHHHH-T---EE
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCccc-ccccchhhHHHHHHHHHHHHHhh-CC-EEE
Confidence 59999999998 667899999999999998 8999984433222111 111 2223444444444444 33 999
Q ss_pred EEEeChhhHHHHHHhhhCCcccceeEEE
Q 024316 82 LVGHSLGGVTLALAADKFPHKISVAVFV 109 (269)
Q Consensus 82 lVGHSmGG~i~~~~a~~~p~~v~~lvli 109 (269)
||||||||+++-.+. +...-+++.+-+
T Consensus 79 IVgHS~G~~iaR~yi-~~~~~~d~~~~l 105 (219)
T PF01674_consen 79 IVGHSMGGTIARYYI-KGGGGADKVVNL 105 (219)
T ss_dssp EEEETCHHHHHHHHH-HHCTGGGTEEE-
T ss_pred EEEcCCcCHHHHHHH-HHcCCCCcccCc
Confidence 999999999777766 333444444433
No 98
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.14 E-value=1.6e-09 Score=95.67 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=77.8
Q ss_pred ceEEEecCCCCCccch-HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 10 KHFVLVHGVNHGAWCW-YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w-~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
+||++|--+....... +.+++.|.+ ||+|+..|..--+..+... ...++++|++-+.++|+.++ .+++|+|.++|
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~-~~f~ldDYi~~l~~~i~~~G--~~v~l~GvCqg 178 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSA-GKFDLEDYIDYLIEFIRFLG--PDIHVIAVCQP 178 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhc-CCCCHHHHHHHHHHHHHHhC--CCCcEEEEchh
Confidence 6999998876555443 678889987 9999999997655443222 34699999999999999984 45999999999
Q ss_pred hHHHHHHhhh-----CCcccceeEEEeccCC
Q 024316 89 GVTLALAADK-----FPHKISVAVFVTAFMP 114 (269)
Q Consensus 89 G~i~~~~a~~-----~p~~v~~lvli~~~~~ 114 (269)
|..+..+++. .|++++.|+++.++..
T Consensus 179 G~~~laa~Al~a~~~~p~~~~sltlm~~PID 209 (406)
T TIGR01849 179 AVPVLAAVALMAENEPPAQPRSMTLMGGPID 209 (406)
T ss_pred hHHHHHHHHHHHhcCCCCCcceEEEEecCcc
Confidence 9975544433 3678999999997544
No 99
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.14 E-value=6.9e-10 Score=97.33 Aligned_cols=102 Identities=21% Similarity=0.150 Sum_probs=69.3
Q ss_pred ceEEEecCCCCCc-cc-hHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCC--CcEEEEEe
Q 024316 10 KHFVLVHGVNHGA-WC-WYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAE--EKVILVGH 85 (269)
Q Consensus 10 ~~ivlvHG~~~~~-~~-w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~--~~vilVGH 85 (269)
.|+|++-|.-.+- .. |+.+.+.|..+|+.++++|.||-|.|.+..-. .+.+.+-..|++.+..++.. .+|.++|-
T Consensus 190 ~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~-~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~ 268 (411)
T PF06500_consen 190 YPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLT-QDSSRLHQAVLDYLASRPWVDHTRVGAWGF 268 (411)
T ss_dssp EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S--S-CCHHHHHHHHHHHHSTTEEEEEEEEEEE
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCCC-cCHHHHHHHHHHHHhcCCccChhheEEEEe
Confidence 3666666655444 34 45555678889999999999999998643211 23356667888888887532 48999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
|+||.++..+|...++||++.|.+++.
T Consensus 269 SfGGy~AvRlA~le~~RlkavV~~Ga~ 295 (411)
T PF06500_consen 269 SFGGYYAVRLAALEDPRLKAVVALGAP 295 (411)
T ss_dssp THHHHHHHHHHHHTTTT-SEEEEES--
T ss_pred ccchHHHHHHHHhcccceeeEeeeCch
Confidence 999999999987788999999988764
No 100
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.09 E-value=9.5e-10 Score=91.45 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=86.2
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhh
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGG 89 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG 89 (269)
+|+.++|+.....++|..+...|... .+|++++.||.|.-.. ...+++++++..++.|.++-...+.+|+|||+||
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~---~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG 76 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQ---PFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGG 76 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-ceeeccccCccccccc---ccCCHHHHHHHHHHHHHHhCCCCCEEEEeecccc
Confidence 58999999999999999999999765 9999999999986332 2359999999999999987445699999999999
Q ss_pred HHHHHHhhh---CCcccceeEEEeccCC
Q 024316 90 VTLALAADK---FPHKISVAVFVTAFMP 114 (269)
Q Consensus 90 ~i~~~~a~~---~p~~v~~lvli~~~~~ 114 (269)
.++..+|.+ ..+.|.-|++++++.+
T Consensus 77 ~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 77 AVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 999988754 4568999999998655
No 101
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.08 E-value=6.2e-09 Score=83.42 Aligned_cols=89 Identities=21% Similarity=0.388 Sum_probs=63.5
Q ss_pred eEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCccc--ccccchHHhHH-HHHHHHHhCC---CCCcEEEEE
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRI--EDVHTFHAYSE-PLMEVLASLP---AEEKVILVG 84 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~--~~~~~~~~~~~-~l~~~i~~l~---~~~~vilVG 84 (269)
.|+.--+++-....|++++..+++.||.|.++|+||.|.|+... ...+++.|++. |+...|+.+. ..-+...||
T Consensus 32 ~~~va~a~Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~~~~P~y~vg 111 (281)
T COG4757 32 RLVVAGATGVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKALPGHPLYFVG 111 (281)
T ss_pred cEEecccCCcchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcchHHHHHHHHhhCCCCceEEee
Confidence 56666677778888999999999999999999999999997432 12345566553 4444444331 235899999
Q ss_pred eChhhHHHHHHhhhCC
Q 024316 85 HSLGGVTLALAADKFP 100 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p 100 (269)
|||||-+.-.+. +++
T Consensus 112 HS~GGqa~gL~~-~~~ 126 (281)
T COG4757 112 HSFGGQALGLLG-QHP 126 (281)
T ss_pred ccccceeecccc-cCc
Confidence 999999555543 555
No 102
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=99.06 E-value=9.2e-09 Score=79.22 Aligned_cols=172 Identities=17% Similarity=0.207 Sum_probs=110.8
Q ss_pred CceEEEecCCCCCc-cchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 9 EKHFVLVHGVNHGA-WCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 9 g~~ivlvHG~~~~~-~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
.+.+++|||...|+ ..|+..-+. +. -.+--++++ .. ...+++++++.|.+.+.+++ ++++||+||+
T Consensus 2 ~~~~lIVpG~~~Sg~~HWq~~we~--~l-~~a~rveq~-------~w-~~P~~~dWi~~l~~~v~a~~--~~~vlVAHSL 68 (181)
T COG3545 2 MTDVLIVPGYGGSGPNHWQSRWES--AL-PNARRVEQD-------DW-EAPVLDDWIARLEKEVNAAE--GPVVLVAHSL 68 (181)
T ss_pred CceEEEecCCCCCChhHHHHHHHh--hC-ccchhcccC-------CC-CCCCHHHHHHHHHHHHhccC--CCeEEEEecc
Confidence 36799999997555 568765432 21 122222221 11 34688999999999999873 6799999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHH
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTI 167 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (269)
|..++..++.+....|+++.+++++... ++ ... . . ... .|++.
T Consensus 69 Gc~~v~h~~~~~~~~V~GalLVAppd~~---~~-----~~~---------~---~-~~~------------tf~~~---- 111 (181)
T COG3545 69 GCATVAHWAEHIQRQVAGALLVAPPDVS---RP-----EIR---------P---K-HLM------------TFDPI---- 111 (181)
T ss_pred cHHHHHHHHHhhhhccceEEEecCCCcc---cc-----ccc---------h---h-hcc------------ccCCC----
Confidence 9999999988877799999999863221 00 000 0 0 000 00000
Q ss_pred HHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCC
Q 024316 168 KIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDH 247 (269)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH 247 (269)
+ . .. ..-|.+++..++|+.++++.++.+++..+. .++.+..+||
T Consensus 112 ------p-~--------------------~~--------lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-~lv~~g~~GH 155 (181)
T COG3545 112 ------P-R--------------------EP--------LPFPSVVVASRNDPYVSYEHAEDLANAWGS-ALVDVGEGGH 155 (181)
T ss_pred ------c-c--------------------cc--------CCCceeEEEecCCCCCCHHHHHHHHHhccH-hheecccccc
Confidence 0 0 00 134789999999999999999999988764 5666777888
Q ss_pred CCCCC---CcHHHHHHHHHHHH
Q 024316 248 MAMLS---DPQKLCDCLSQISL 266 (269)
Q Consensus 248 ~~~~e---~p~~~~~~l~~f~~ 266 (269)
.--.+ .-.+..+.+.+|+.
T Consensus 156 iN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 156 INAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred cchhhcCCCcHHHHHHHHHHhh
Confidence 65332 33555555555543
No 103
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.04 E-value=7.3e-10 Score=94.27 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=86.7
Q ss_pred CCCCceEEEecCCCCCccchHHHHHHHHhC---C------CeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCC
Q 024316 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAG---G------HRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPA 76 (269)
Q Consensus 6 ~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~---g------~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~ 76 (269)
++.=.||+++|||+.|-+.+..+++-|... | |.||+|.+||+|-|+.+...-..-.+.|..+..++-.| +
T Consensus 149 ~k~v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk~GFn~~a~ArvmrkLMlRL-g 227 (469)
T KOG2565|consen 149 KKKVKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSKTGFNAAATARVMRKLMLRL-G 227 (469)
T ss_pred CCcccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCccCCccHHHHHHHHHHHHHHh-C
Confidence 343469999999999999999999999654 2 68999999999999987544456677778888888778 5
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCCcccceeEEE
Q 024316 77 EEKVILVGHSLGGVTLALAADKFPHKISVAVFV 109 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli 109 (269)
..+..+=|-.+|+.|++.+|..+|++|.++=+-
T Consensus 228 ~nkffiqGgDwGSiI~snlasLyPenV~GlHln 260 (469)
T KOG2565|consen 228 YNKFFIQGGDWGSIIGSNLASLYPENVLGLHLN 260 (469)
T ss_pred cceeEeecCchHHHHHHHHHhhcchhhhHhhhc
Confidence 679999999999999999999999999987543
No 104
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.01 E-value=1.6e-09 Score=89.67 Aligned_cols=102 Identities=24% Similarity=0.219 Sum_probs=73.5
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHh-CC-----CCCcEEEE
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS-LP-----AEEKVILV 83 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~-l~-----~~~~vilV 83 (269)
+.|||+||+......|..++.+++.+||-|+++|+...+.... .++..++.+.++.+.+-++. ++ ...++.|.
T Consensus 18 PVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~-~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~ 96 (259)
T PF12740_consen 18 PVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIGGPDD-TDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALA 96 (259)
T ss_pred CEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccCCCCc-chhHHHHHHHHHHHHhcchhhccccccccccceEEe
Confidence 7899999999777779999999999999999999766433211 11222344444443332222 11 23589999
Q ss_pred EeChhhHHHHHHhhhC-----CcccceeEEEecc
Q 024316 84 GHSLGGVTLALAADKF-----PHKISVAVFVTAF 112 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~-----p~~v~~lvli~~~ 112 (269)
|||-||-++..++..+ +.+++++|+++++
T Consensus 97 GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPV 130 (259)
T PF12740_consen 97 GHSRGGKVAFAMALGNASSSLDLRFSALILLDPV 130 (259)
T ss_pred eeCCCCHHHHHHHhhhcccccccceeEEEEeccc
Confidence 9999999888887776 5689999999874
No 105
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.01 E-value=4.9e-08 Score=81.44 Aligned_cols=105 Identities=23% Similarity=0.325 Sum_probs=66.7
Q ss_pred CceEEEecCCCCCccchHHHHHHHH-hCCC--eEEEe--CCCCC----CC-C--Cc-c------cccc-cchHHhHHHHH
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLV-AGGH--RVTAV--DLAAS----GI-N--MK-R------IEDV-HTFHAYSEPLM 68 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~-~~g~--~Via~--Dl~G~----G~-S--~~-~------~~~~-~~~~~~~~~l~ 68 (269)
..|.|||||++.+.+.+...+..+. +.|. .|+.+ +--|+ |. + .+ + .+.. .+....+..+.
T Consensus 11 ~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 11 TTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp -EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 5699999999999999999999997 5554 45433 22231 21 1 11 1 1121 25666777666
Q ss_pred HHHHhC---CCCCcEEEEEeChhhHHHHHHhhhCCc-----ccceeEEEeccC
Q 024316 69 EVLASL---PAEEKVILVGHSLGGVTLALAADKFPH-----KISVAVFVTAFM 113 (269)
Q Consensus 69 ~~i~~l---~~~~~vilVGHSmGG~i~~~~a~~~p~-----~v~~lvli~~~~ 113 (269)
.+|..| -..+++-+|||||||+++..++..+.. +|.++|.|+++.
T Consensus 91 ~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pf 143 (255)
T PF06028_consen 91 KVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPF 143 (255)
T ss_dssp HHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--T
T ss_pred HHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEecccc
Confidence 666655 256799999999999988887766432 689999998743
No 106
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.99 E-value=6.4e-08 Score=80.27 Aligned_cols=160 Identities=19% Similarity=0.131 Sum_probs=110.3
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCC-CCCCcccc------c----ccchHHhHHHHHHHHHhC---C
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAAS-GINMKRIE------D----VHTFHAYSEPLMEVLASL---P 75 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~-G~S~~~~~------~----~~~~~~~~~~l~~~i~~l---~ 75 (269)
+.||++|+++.=....+.+.++|++.||-|++||+-+. |.+....+ . ..+......++.+.++.| +
T Consensus 28 P~VIv~hei~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~ 107 (236)
T COG0412 28 PGVIVLHEIFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQP 107 (236)
T ss_pred CEEEEEecccCCchHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCC
Confidence 79999999987777889999999999999999999863 43321110 0 012255666666666655 2
Q ss_pred --CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCC
Q 024316 76 --AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNP 153 (269)
Q Consensus 76 --~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (269)
..+++.++|.||||.+++.++.+.| +|++.|.--+. .. . ..
T Consensus 108 ~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~--------------~~---------------------~-~~ 150 (236)
T COG0412 108 QVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGG--------------LI---------------------A-DD 150 (236)
T ss_pred CCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCC--------------CC---------------------C-Cc
Confidence 2357999999999999999987776 66665422110 00 0 00
Q ss_pred CccccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHh
Q 024316 154 SHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQN 233 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~ 233 (269)
. . + ....++|+++++++.|..+|......+.+.
T Consensus 151 ~-------~--------------~--------------------------~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~ 183 (236)
T COG0412 151 T-------A--------------D--------------------------APKIKVPVLLHLAGEDPYIPAADVDALAAA 183 (236)
T ss_pred c-------c--------------c--------------------------cccccCcEEEEecccCCCCChhHHHHHHHH
Confidence 0 0 0 000278999999999999999877777654
Q ss_pred CC----CCeEEEEcCCCCCCCCCC
Q 024316 234 YP----VNEVMEIKGGDHMAMLSD 253 (269)
Q Consensus 234 ~~----~~~~~~i~~~gH~~~~e~ 253 (269)
+. ..++++++++.|..+.+.
T Consensus 184 ~~~~~~~~~~~~y~ga~H~F~~~~ 207 (236)
T COG0412 184 LEDAGVKVDLEIYPGAGHGFANDR 207 (236)
T ss_pred HHhcCCCeeEEEeCCCccccccCC
Confidence 32 467899999999998664
No 107
>PRK10115 protease 2; Provisional
Probab=98.97 E-value=3.1e-08 Score=94.23 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=78.5
Q ss_pred CceEEEecCCCCCcc--chHHHHHHHHhCCCeEEEeCCCCCCCCCcc-------cccccchHHhHHHHHHHHHhCC-CCC
Q 024316 9 EKHFVLVHGVNHGAW--CWYKLKARLVAGGHRVTAVDLAASGINMKR-------IEDVHTFHAYSEPLMEVLASLP-AEE 78 (269)
Q Consensus 9 g~~ivlvHG~~~~~~--~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~-------~~~~~~~~~~~~~l~~~i~~l~-~~~ 78 (269)
.|.||.+||.+..+. .|......|.++||-|+.++.||.|.=.+. .....+++|+++.+..+++.-- .-+
T Consensus 445 ~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~ 524 (686)
T PRK10115 445 NPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPS 524 (686)
T ss_pred CCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChH
Confidence 489999999887774 366656667788999999999997654321 1122478888888777776521 125
Q ss_pred cEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 79 KVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
++.+.|-|.||+.+..++.++|+++++.|...+.
T Consensus 525 rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~ 558 (686)
T PRK10115 525 LCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPF 558 (686)
T ss_pred HeEEEEECHHHHHHHHHHhcChhheeEEEecCCc
Confidence 7999999999998888888899999999877653
No 108
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.96 E-value=2.4e-08 Score=86.38 Aligned_cols=206 Identities=17% Similarity=0.080 Sum_probs=103.0
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCC-CCCccc--------cc-ccchHH---------hHHHHH-
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASG-INMKRI--------ED-VHTFHA---------YSEPLM- 68 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G-~S~~~~--------~~-~~~~~~---------~~~~l~- 68 (269)
-|.||..||.+.....|...+. +++.||-|+++|.+|+| .|.... +. ...+++ ...|..
T Consensus 83 ~Pavv~~hGyg~~~~~~~~~~~-~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~r 161 (320)
T PF05448_consen 83 LPAVVQFHGYGGRSGDPFDLLP-WAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVR 161 (320)
T ss_dssp EEEEEEE--TT--GGGHHHHHH-HHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHH
T ss_pred cCEEEEecCCCCCCCCcccccc-cccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHH
Confidence 3688999999999888877665 56789999999999999 332110 00 001111 223333
Q ss_pred --HHHHhCCC--CCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCccccccc
Q 024316 69 --EVLASLPA--EEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQ 144 (269)
Q Consensus 69 --~~i~~l~~--~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (269)
+++.+++. .+++.+.|.|.||.++..+|+.. ++|++.+...+...+. . ....... . ...+
T Consensus 162 avd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd-~rv~~~~~~vP~l~d~---~-~~~~~~~-~------~~~y---- 225 (320)
T PF05448_consen 162 AVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALD-PRVKAAAADVPFLCDF---R-RALELRA-D------EGPY---- 225 (320)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHS-ST-SEEEEESESSSSH---H-HHHHHT---------STTT----
T ss_pred HHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhC-ccccEEEecCCCccch---h-hhhhcCC-c------cccH----
Confidence 34445532 25899999999999888887665 4799888776532210 0 0000000 0 0000
Q ss_pred ccccCCCCCCccccccchhHHHHHHh---cCCCHHh-HHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCC
Q 024316 145 FSQCDASNPSHISMLFGREFLTIKIY---QLCPPED-LELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDI 220 (269)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~ 220 (269)
..+..++. ......+ ........ +.. + -.+..++|+++-+|-.|.
T Consensus 226 ------------------~~~~~~~~~~d~~~~~~~~v~~~L~Y~-------D~~-n-----fA~ri~~pvl~~~gl~D~ 274 (320)
T PF05448_consen 226 ------------------PEIRRYFRWRDPHHEREPEVFETLSYF-------DAV-N-----FARRIKCPVLFSVGLQDP 274 (320)
T ss_dssp ------------------HHHHHHHHHHSCTHCHHHHHHHHHHTT--------HH-H-----HGGG--SEEEEEEETT-S
T ss_pred ------------------HHHHHHHhccCCCcccHHHHHHHHhhh-------hHH-H-----HHHHcCCCEEEEEecCCC
Confidence 01111111 0000000 00001111 000 0 012248999999999999
Q ss_pred CCChHHHHHHHHhCC-CCeEEEEcCCCCCCCCCCcHHH-HHHHHHHHH
Q 024316 221 GLPKQFQHWMIQNYP-VNEVMEIKGGDHMAMLSDPQKL-CDCLSQISL 266 (269)
Q Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~e~p~~~-~~~l~~f~~ 266 (269)
++||..+-+...+++ ..++.+++..||... .++ .+...+|+.
T Consensus 275 ~cPP~t~fA~yN~i~~~K~l~vyp~~~He~~----~~~~~~~~~~~l~ 318 (320)
T PF05448_consen 275 VCPPSTQFAAYNAIPGPKELVVYPEYGHEYG----PEFQEDKQLNFLK 318 (320)
T ss_dssp SS-HHHHHHHHCC--SSEEEEEETT--SSTT----HHHHHHHHHHHHH
T ss_pred CCCchhHHHHHhccCCCeeEEeccCcCCCch----hhHHHHHHHHHHh
Confidence 999999988887776 457889999999653 333 455556654
No 109
>COG0400 Predicted esterase [General function prediction only]
Probab=98.94 E-value=2e-08 Score=81.07 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=103.3
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCC--CCCCCC---ccccccc-------chHHhHHHHHHHHHhCCC-
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA--ASGINM---KRIEDVH-------TFHAYSEPLMEVLASLPA- 76 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~--G~G~S~---~~~~~~~-------~~~~~~~~l~~~i~~l~~- 76 (269)
++|||+||+|.+.+.+-+....+.- .+.++.+-=+ =.|.-. +.....+ ....+++.|.+..++.+.
T Consensus 19 ~~iilLHG~Ggde~~~~~~~~~~~P-~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~~~gi~ 97 (207)
T COG0400 19 PLLILLHGLGGDELDLVPLPELILP-NATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAEEYGID 97 (207)
T ss_pred cEEEEEecCCCChhhhhhhhhhcCC-CCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 4699999999888777775555543 3566654211 011110 0001112 233444555555555532
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCcc
Q 024316 77 EEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHI 156 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (269)
.++++++|+|=|+.++.....++|+.++++|++++..+.. + .
T Consensus 98 ~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~---------------------------------~-~---- 139 (207)
T COG0400 98 SSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLE---------------------------------P-E---- 139 (207)
T ss_pred hhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCC---------------------------------C-c----
Confidence 2589999999999999999889999999998887542200 0 0
Q ss_pred ccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhC--
Q 024316 157 SMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY-- 234 (269)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-- 234 (269)
. .. + ....|+++++|+.|.++|...+.+..+.+
T Consensus 140 -----~-----------~~-~----------------------------~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~ 174 (207)
T COG0400 140 -----L-----------LP-D----------------------------LAGTPILLSHGTEDPVVPLALAEALAEYLTA 174 (207)
T ss_pred -----c-----------cc-c----------------------------cCCCeEEEeccCcCCccCHHHHHHHHHHHHH
Confidence 0 00 0 01668999999999999999887776543
Q ss_pred --CCCeEEEEcCCCCCCCCCCcHHHHH
Q 024316 235 --PVNEVMEIKGGDHMAMLSDPQKLCD 259 (269)
Q Consensus 235 --~~~~~~~i~~~gH~~~~e~p~~~~~ 259 (269)
-+.+.+.++ .||....|.-++..+
T Consensus 175 ~g~~v~~~~~~-~GH~i~~e~~~~~~~ 200 (207)
T COG0400 175 SGADVEVRWHE-GGHEIPPEELEAARS 200 (207)
T ss_pred cCCCEEEEEec-CCCcCCHHHHHHHHH
Confidence 345677888 999875544444333
No 110
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.92 E-value=1.3e-08 Score=82.11 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=72.7
Q ss_pred EecCCC--CCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHH
Q 024316 14 LVHGVN--HGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVT 91 (269)
Q Consensus 14 lvHG~~--~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i 91 (269)
++|..+ .+...|..+...|.. .++|+++|++|+|.+.... .+++++++.+.+.+.+.....+++++||||||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~ 77 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRG-RRDVSALPLPGFGPGEPLP---ASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLL 77 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCC-CccEEEecCCCCCCCCCCC---CCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHH
Confidence 344433 567789999999965 6899999999998765432 3677777777766655423468999999999998
Q ss_pred HHHHhhh---CCcccceeEEEeccCC
Q 024316 92 LALAADK---FPHKISVAVFVTAFMP 114 (269)
Q Consensus 92 ~~~~a~~---~p~~v~~lvli~~~~~ 114 (269)
+...+.+ .++.+.+++++++..+
T Consensus 78 a~~~a~~l~~~~~~~~~l~~~~~~~~ 103 (212)
T smart00824 78 AHAVAARLEARGIPPAAVVLLDTYPP 103 (212)
T ss_pred HHHHHHHHHhCCCCCcEEEEEccCCC
Confidence 8777654 4567999998886544
No 111
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.87 E-value=1.3e-07 Score=73.98 Aligned_cols=164 Identities=16% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCc-EEEEEeChhhHHHHHH
Q 024316 17 GVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEK-VILVGHSLGGVTLALA 95 (269)
Q Consensus 17 G~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~-vilVGHSmGG~i~~~~ 95 (269)
|...+-..=+.++..|.++||.|+-+|+||-|.|...-++-..=-+.+...++.+.+.-...+ +.|.|.|.|++|+..+
T Consensus 41 gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~l 120 (210)
T COG2945 41 GGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQL 120 (210)
T ss_pred cCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHH
Confidence 333333445567778899999999999999999987643222212334455566666522233 4789999999999999
Q ss_pred hhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchhHHHHHHhcCCCH
Q 024316 96 ADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPP 175 (269)
Q Consensus 96 a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (269)
|.++|+.- ++++...+ .+ . .
T Consensus 121 a~r~~e~~---~~is~~p~-------------------------------------~~-----~--~------------- 140 (210)
T COG2945 121 AMRRPEIL---VFISILPP-------------------------------------IN-----A--Y------------- 140 (210)
T ss_pred HHhccccc---ceeeccCC-------------------------------------CC-----c--h-------------
Confidence 98876432 22221100 00 0 0
Q ss_pred HhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCCCCCCcH
Q 024316 176 EDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQ 255 (269)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~ 255 (269)
++ +.+.| ...|.++|.|+.|.++++...-+-.+..+ -+++++++++|+. ..+=.
T Consensus 141 -df----s~l~P-------------------~P~~~lvi~g~~Ddvv~l~~~l~~~~~~~-~~~i~i~~a~HFF-~gKl~ 194 (210)
T COG2945 141 -DF----SFLAP-------------------CPSPGLVIQGDADDVVDLVAVLKWQESIK-ITVITIPGADHFF-HGKLI 194 (210)
T ss_pred -hh----hhccC-------------------CCCCceeEecChhhhhcHHHHHHhhcCCC-CceEEecCCCcee-cccHH
Confidence 00 00111 15578999999999988876655555433 4577889999976 56778
Q ss_pred HHHHHHHHHHH
Q 024316 256 KLCDCLSQISL 266 (269)
Q Consensus 256 ~~~~~l~~f~~ 266 (269)
.+.+.+.+|+.
T Consensus 195 ~l~~~i~~~l~ 205 (210)
T COG2945 195 ELRDTIADFLE 205 (210)
T ss_pred HHHHHHHHHhh
Confidence 88899988884
No 112
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.86 E-value=2.8e-09 Score=92.43 Aligned_cols=109 Identities=21% Similarity=0.271 Sum_probs=63.4
Q ss_pred CCceEEEecCCCCCc--cch-HHHHHHH-Hh--CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC----C-C
Q 024316 8 EEKHFVLVHGVNHGA--WCW-YKLKARL-VA--GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL----P-A 76 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~--~~w-~~~~~~L-~~--~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l----~-~ 76 (269)
+.+++|+||||..+. ..| ..+...| .. ..++||++|+...- +..-..........+..|..+|..| + .
T Consensus 70 ~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a-~~~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~ 148 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGA-SNNYPQAVANTRLVGRQLAKFLSFLINNFGVP 148 (331)
T ss_dssp TSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHH-SS-HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhc-cccccchhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence 468999999998777 456 4455544 44 47899999995321 1100001112223333333333332 1 2
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCCc--ccceeEEEeccCCCCC
Q 024316 77 EEKVILVGHSLGGVTLALAADKFPH--KISVAVFVTAFMPDTT 117 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p~--~v~~lvli~~~~~~~~ 117 (269)
.++++||||||||-|+..++..... +|.+++-++|..|...
T Consensus 149 ~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~F~ 191 (331)
T PF00151_consen 149 PENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPLFE 191 (331)
T ss_dssp GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TTTT
T ss_pred hhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccccccc
Confidence 3689999999999999998877766 8999999998777543
No 113
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.86 E-value=4.6e-08 Score=85.18 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=76.9
Q ss_pred CceEEEecCCCCCccchH-----HHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhH-HHHHHHHHh---CCCCCc
Q 024316 9 EKHFVLVHGVNHGAWCWY-----KLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYS-EPLMEVLAS---LPAEEK 79 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~-----~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~-~~l~~~i~~---l~~~~~ 79 (269)
+.|+++||=+-.....|+ ..+..|.++|+.|..+|.++-.++.+ ..++++|+ +.+.+.|+. ..+.++
T Consensus 107 ~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~----~~~~edYi~e~l~~aid~v~~itg~~~ 182 (445)
T COG3243 107 KRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLA----AKNLEDYILEGLSEAIDTVKDITGQKD 182 (445)
T ss_pred CCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhh----hccHHHHHHHHHHHHHHHHHHHhCccc
Confidence 579999999887777663 47778889999999999987655543 34777777 544444443 223478
Q ss_pred EEEEEeChhhHHHHHHhhhCCcc-cceeEEEecc
Q 024316 80 VILVGHSLGGVTLALAADKFPHK-ISVAVFVTAF 112 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~~~p~~-v~~lvli~~~ 112 (269)
+.+|||++||.+++.+++.++.+ |+.++++.+.
T Consensus 183 InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~ 216 (445)
T COG3243 183 INLIGYCVGGTLLAAALALMAAKRIKSLTLLTSP 216 (445)
T ss_pred cceeeEecchHHHHHHHHhhhhcccccceeeecc
Confidence 99999999999888888888887 9999999764
No 114
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.84 E-value=9.2e-09 Score=84.02 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=73.9
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC------CCCCcEEE
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL------PAEEKVIL 82 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l------~~~~~vil 82 (269)
=|.|+|+||+......|..++..++.+||=|+||++-.- ......++..+....++.+-+-+.++ +...+..|
T Consensus 46 yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~-~~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal 124 (307)
T PF07224_consen 46 YPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTL-FPPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLAL 124 (307)
T ss_pred ccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhcc-cCCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEE
Confidence 378999999999999999999999999999999999752 11111112233444444444444432 13468999
Q ss_pred EEeChhhHHHHHHhhhCC--cccceeEEEecc
Q 024316 83 VGHSLGGVTLALAADKFP--HKISVAVFVTAF 112 (269)
Q Consensus 83 VGHSmGG~i~~~~a~~~p--~~v~~lvli~~~ 112 (269)
+|||.||-++..+|..+- -++++||-+++.
T Consensus 125 ~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV 156 (307)
T PF07224_consen 125 SGHSRGGKTAFALALGYATSLKFSALIGIDPV 156 (307)
T ss_pred eecCCccHHHHHHHhcccccCchhheeccccc
Confidence 999999998887776542 358899999875
No 115
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.80 E-value=4.6e-07 Score=87.05 Aligned_cols=83 Identities=17% Similarity=0.073 Sum_probs=60.1
Q ss_pred HHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC-------------------CCCcEEEEEeChh
Q 024316 28 LKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP-------------------AEEKVILVGHSLG 88 (269)
Q Consensus 28 ~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~-------------------~~~~vilVGHSmG 88 (269)
....|.++||.|+..|.||.|.|+.... ... .+-.++..++|+=+. -..+|.++|.|+|
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~-~~~-~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~ 348 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPT-TGD-YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYL 348 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCc-cCC-HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHH
Confidence 4567788999999999999999987532 111 223333333333221 0369999999999
Q ss_pred hHHHHHHhhhCCcccceeEEEecc
Q 024316 89 GVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 89 G~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
|.+.+.+|...|..++++|-+++.
T Consensus 349 G~~~~~aAa~~pp~LkAIVp~a~i 372 (767)
T PRK05371 349 GTLPNAVATTGVEGLETIIPEAAI 372 (767)
T ss_pred HHHHHHHHhhCCCcceEEEeeCCC
Confidence 999988888888899999887654
No 116
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.75 E-value=2.8e-08 Score=86.75 Aligned_cols=101 Identities=26% Similarity=0.273 Sum_probs=76.1
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCe---EEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeC
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHR---VTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHS 86 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~---Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHS 86 (269)
-|+||+||...+...|..+-..+...|+. |+++++++-. ...+ ....-+.+...|.+++... +-+++.|||||
T Consensus 60 ~pivlVhG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~--~~~~~~ql~~~V~~~l~~~-ga~~v~LigHS 135 (336)
T COG1075 60 EPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGGD-GTYS--LAVRGEQLFAYVDEVLAKT-GAKKVNLIGHS 135 (336)
T ss_pred ceEEEEccCcCCcchhhhhhhhhcchHHHhcccccccccccC-CCcc--ccccHHHHHHHHHHHHhhc-CCCceEEEeec
Confidence 49999999988888898888888887887 9999998751 1111 1224455555555555555 34789999999
Q ss_pred hhhHHHHHHhhhCC--cccceeEEEeccCC
Q 024316 87 LGGVTLALAADKFP--HKISVAVFVTAFMP 114 (269)
Q Consensus 87 mGG~i~~~~a~~~p--~~v~~lvli~~~~~ 114 (269)
|||.++.+++...+ .+|+.++.++++-.
T Consensus 136 ~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~ 165 (336)
T COG1075 136 MGGLDSRYYLGVLGGANRVASVVTLGTPHH 165 (336)
T ss_pred ccchhhHHHHhhcCccceEEEEEEeccCCC
Confidence 99999888888887 89999999986433
No 117
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.72 E-value=2.2e-08 Score=84.52 Aligned_cols=96 Identities=20% Similarity=0.318 Sum_probs=60.0
Q ss_pred CceEEEecCCCCCccc---hHHHHHHHHhCCCeEEEeCCC----CCCCCCcccccccchHHhHHHHHHHHHhCC------
Q 024316 9 EKHFVLVHGVNHGAWC---WYKLKARLVAGGHRVTAVDLA----ASGINMKRIEDVHTFHAYSEPLMEVLASLP------ 75 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~---w~~~~~~L~~~g~~Via~Dl~----G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~------ 75 (269)
...||||-|++.+-.. -..++..|...+|.|+-+-|+ |+|. .+++..+++|.++|+-+.
T Consensus 33 ~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~--------~SL~~D~~eI~~~v~ylr~~~~g~ 104 (303)
T PF08538_consen 33 PNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGT--------SSLDRDVEEIAQLVEYLRSEKGGH 104 (303)
T ss_dssp SSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHHHHHHHHHHHHS---
T ss_pred CcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCc--------chhhhHHHHHHHHHHHHHHhhccc
Confidence 3589999999876543 578899997789999999775 3443 366666777766666431
Q ss_pred -CCCcEEEEEeChhhHHHHHHhh-hCC----cccceeEEEecc
Q 024316 76 -AEEKVILVGHSLGGVTLALAAD-KFP----HKISVAVFVTAF 112 (269)
Q Consensus 76 -~~~~vilVGHSmGG~i~~~~a~-~~p----~~v~~lvli~~~ 112 (269)
..++++|+|||-|---+..++. .++ .+|++.|+-+++
T Consensus 105 ~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApV 147 (303)
T PF08538_consen 105 FGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPV 147 (303)
T ss_dssp ---S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE-
T ss_pred cCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCC
Confidence 2358999999999996655543 333 679999999875
No 118
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.69 E-value=3.3e-07 Score=74.50 Aligned_cols=93 Identities=24% Similarity=0.313 Sum_probs=54.8
Q ss_pred EEEecCCCCCc---cchHHHHHHHHh-CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHH----Hh---CC-CCCc
Q 024316 12 FVLVHGVNHGA---WCWYKLKARLVA-GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVL----AS---LP-AEEK 79 (269)
Q Consensus 12 ivlvHG~~~~~---~~w~~~~~~L~~-~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i----~~---l~-~~~~ 79 (269)
||++||.+... .....+...+++ .|+.|+.+|.|= ++. .++.+..+|+.+.+ +. ++ ..++
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl---~p~-----~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~ 72 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRL---APE-----APFPAALEDVKAAYRWLLKNADKLGIDPER 72 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE------TTT-----SSTTHHHHHHHHHHHHHHHTHHHHTEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccc---ccc-----ccccccccccccceeeeccccccccccccc
Confidence 79999875322 223444555554 799999999982 211 23334444444333 33 11 2358
Q ss_pred EEEEEeChhhHHHHHHhhhCCc----ccceeEEEecc
Q 024316 80 VILVGHSLGGVTLALAADKFPH----KISVAVFVTAF 112 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~~~p~----~v~~lvli~~~ 112 (269)
++|+|+|-||.++..++....+ .+++++++++.
T Consensus 73 i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~ 109 (211)
T PF07859_consen 73 IVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPW 109 (211)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCH
T ss_pred eEEeecccccchhhhhhhhhhhhcccchhhhhccccc
Confidence 9999999999988877654332 48899999874
No 119
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.68 E-value=4.8e-07 Score=68.68 Aligned_cols=101 Identities=22% Similarity=0.257 Sum_probs=77.2
Q ss_pred CceEEEecCCCCCcc--chHHHHHHHHhCCCeEEEeCCCC-----CCCCCcccccccchHHhHHHHHHHHHhCCCCCcEE
Q 024316 9 EKHFVLVHGVNHGAW--CWYKLKARLVAGGHRVTAVDLAA-----SGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVI 81 (269)
Q Consensus 9 g~~ivlvHG~~~~~~--~w~~~~~~L~~~g~~Via~Dl~G-----~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vi 81 (269)
-.+|||-||.+.+-. ....+...|+..|+.|.-+++|= .|....+.....-..+|...++++.+.+ ...+.|
T Consensus 14 ~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l-~~gpLi 92 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGL-AEGPLI 92 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcc-cCCcee
Confidence 358999999987655 57889999999999999998863 2311111212224568888888888877 346999
Q ss_pred EEEeChhhHHHHHHhhhCCcccceeEEEe
Q 024316 82 LVGHSLGGVTLALAADKFPHKISVAVFVT 110 (269)
Q Consensus 82 lVGHSmGG~i~~~~a~~~p~~v~~lvli~ 110 (269)
+=||||||-++++.|......|++|++++
T Consensus 93 ~GGkSmGGR~aSmvade~~A~i~~L~clg 121 (213)
T COG3571 93 IGGKSMGGRVASMVADELQAPIDGLVCLG 121 (213)
T ss_pred eccccccchHHHHHHHhhcCCcceEEEec
Confidence 99999999999999877667799999886
No 120
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.68 E-value=6.5e-06 Score=66.92 Aligned_cols=208 Identities=16% Similarity=0.128 Sum_probs=103.8
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCC-CCCCcccccccchHHhHHHHHHHHHhC--CCCCcEEEEEe
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAAS-GINMKRIEDVHTFHAYSEPLMEVLASL--PAEEKVILVGH 85 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~-G~S~~~~~~~~~~~~~~~~l~~~i~~l--~~~~~vilVGH 85 (269)
.++||+..||+..-..+..++.+|+..||+||-||-.-| |.|+...+ .+|++.-.++|..+++-+ .+..++=||.-
T Consensus 30 ~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~-eftms~g~~sL~~V~dwl~~~g~~~~GLIAa 108 (294)
T PF02273_consen 30 NNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDIN-EFTMSIGKASLLTVIDWLATRGIRRIGLIAA 108 (294)
T ss_dssp S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B--------------HHHHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred CCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChh-hcchHHhHHHHHHHHHHHHhcCCCcchhhhh
Confidence 579999999999999999999999999999999999987 99988764 579988888887777754 14568999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCc-cccccchh-
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSH-ISMLFGRE- 163 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 163 (269)
|+.|-++...|.. + .+.-||+.-+.+. ....+++..+. .++....... | .+.. ..-..+.+
T Consensus 109 SLSaRIAy~Va~~-i-~lsfLitaVGVVn-----lr~TLe~al~~--------Dyl~~~i~~l-p-~dldfeGh~l~~~v 171 (294)
T PF02273_consen 109 SLSARIAYEVAAD-I-NLSFLITAVGVVN-----LRDTLEKALGY--------DYLQLPIEQL-P-EDLDFEGHNLGAEV 171 (294)
T ss_dssp TTHHHHHHHHTTT-S---SEEEEES--S------HHHHHHHHHSS---------GGGS-GGG----SEEEETTEEEEHHH
T ss_pred hhhHHHHHHHhhc-c-CcceEEEEeeeee-----HHHHHHHHhcc--------chhhcchhhC-C-CcccccccccchHH
Confidence 9999999998864 3 4777776654432 11122221111 0011000000 0 1000 00011122
Q ss_pred HHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhC--CCCeEEE
Q 024316 164 FLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY--PVNEVME 241 (269)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~ 241 (269)
|..+.+...-. +..... . +.....+|.....+++|.++.+.....+...+ +..+++.
T Consensus 172 Fv~dc~e~~w~--~l~ST~----------~---------~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klys 230 (294)
T PF02273_consen 172 FVTDCFEHGWD--DLDSTI----------N---------DMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYS 230 (294)
T ss_dssp HHHHHHHTT-S--SHHHHH----------H---------HHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEE
T ss_pred HHHHHHHcCCc--cchhHH----------H---------HHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEE
Confidence 22222221100 011000 0 01113789999999999999998888888765 3557889
Q ss_pred EcCCCCCCCCCCcHH
Q 024316 242 IKGGDHMAMLSDPQK 256 (269)
Q Consensus 242 i~~~gH~~~~e~p~~ 256 (269)
++|++|-+ -|.|-.
T Consensus 231 l~Gs~HdL-~enl~v 244 (294)
T PF02273_consen 231 LPGSSHDL-GENLVV 244 (294)
T ss_dssp ETT-SS-T-TSSHHH
T ss_pred ecCccchh-hhChHH
Confidence 99999987 566633
No 121
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.68 E-value=6e-08 Score=79.51 Aligned_cols=86 Identities=21% Similarity=0.241 Sum_probs=50.8
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhC--CCeEEEeCCCCCCCCCcccccccchHH----hHHHHHHHHHhCCCC-CcEE
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAG--GHRVTAVDLAASGINMKRIEDVHTFHA----YSEPLMEVLASLPAE-EKVI 81 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~--g~~Via~Dl~G~G~S~~~~~~~~~~~~----~~~~l~~~i~~l~~~-~~vi 81 (269)
...||||||++.+...|..+...|... .+.--.+...++-..... ...+++. ++++|.+.++..... .+++
T Consensus 4 ~hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~~--T~~gI~~~g~rL~~eI~~~~~~~~~~~~~Is 81 (217)
T PF05057_consen 4 VHLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEFK--TFDGIDVCGERLAEEILEHIKDYESKIRKIS 81 (217)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhcccccccc--cchhhHHHHHHHHHHHHHhccccccccccce
Confidence 468999999999999998887777551 222112222222111111 1123444 445555555544221 4799
Q ss_pred EEEeChhhHHHHHHh
Q 024316 82 LVGHSLGGVTLALAA 96 (269)
Q Consensus 82 lVGHSmGG~i~~~~a 96 (269)
+|||||||.++-.+.
T Consensus 82 fIgHSLGGli~r~al 96 (217)
T PF05057_consen 82 FIGHSLGGLIARYAL 96 (217)
T ss_pred EEEecccHHHHHHHH
Confidence 999999999776654
No 122
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.67 E-value=1.6e-07 Score=77.78 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=63.4
Q ss_pred CCceEEEecCCCCCccchHHHHHHH-HhCCC--eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC---CCCcEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARL-VAGGH--RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP---AEEKVI 81 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L-~~~g~--~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~---~~~~vi 81 (269)
++..+|||||+..+-..--.-+..+ ...++ .|+.+.+|+.|.-..-..+..+...-...+.++|+.|. ..++++
T Consensus 17 ~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ 96 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKRIH 96 (233)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCceEE
Confidence 3679999999998865432212222 22233 79999999887532111111133333444555555441 357899
Q ss_pred EEEeChhhHHHHHHhhh----CC-----cccceeEEEecc
Q 024316 82 LVGHSLGGVTLALAADK----FP-----HKISVAVFVTAF 112 (269)
Q Consensus 82 lVGHSmGG~i~~~~a~~----~p-----~~v~~lvli~~~ 112 (269)
||+||||+.+...+... .+ .+|..+|+++|-
T Consensus 97 ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApD 136 (233)
T PF05990_consen 97 ILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPD 136 (233)
T ss_pred EEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCC
Confidence 99999999977766432 21 367788888753
No 123
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.62 E-value=4.8e-06 Score=71.62 Aligned_cols=239 Identities=16% Similarity=0.162 Sum_probs=124.5
Q ss_pred CceEEEecCCCCCccchHH-H-HHHHHhCCCeEEEeCCCCCCCCCcccc---cccchHHhH----------HHHHHHHHh
Q 024316 9 EKHFVLVHGVNHGAWCWYK-L-KARLVAGGHRVTAVDLAASGINMKRIE---DVHTFHAYS----------EPLMEVLAS 73 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~-~-~~~L~~~g~~Via~Dl~G~G~S~~~~~---~~~~~~~~~----------~~l~~~i~~ 73 (269)
.+.+|.+.|.+.+....+. + +..|.+.|...+.+..|=||......+ ...++.|+. ..|...+++
T Consensus 92 rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~ 171 (348)
T PF09752_consen 92 RPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLER 171 (348)
T ss_pred CceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHHh
Confidence 5677888999976654433 3 566777799999999999986532211 122333332 345555566
Q ss_pred CCCCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCC
Q 024316 74 LPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNP 153 (269)
Q Consensus 74 l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (269)
. +..++-|.|-||||..++++|...|..|..+-++++...... ....++.. ++ .|. .+...+......+.
T Consensus 172 ~-G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~v-Ft~Gvls~---~i----~W~-~L~~q~~~~~~~~~ 241 (348)
T PF09752_consen 172 E-GYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVV-FTEGVLSN---SI----NWD-ALEKQFEDTVYEEE 241 (348)
T ss_pred c-CCCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcc-hhhhhhhc---CC----CHH-HHHHHhcccchhhh
Confidence 5 457999999999999999999999988876666664322111 00011111 00 000 00000000000000
Q ss_pred C-ccccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHH
Q 024316 154 S-HISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQ 232 (269)
Q Consensus 154 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~ 232 (269)
. ..............-......+........+ ..+.....+.. ....-.+.+|.+++|..+|......+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~m-------d~~T~l~nf~~-P~dp~~ii~V~A~~DaYVPr~~v~~Lq~ 313 (348)
T PF09752_consen 242 ISDIPAQNKSLPLDSMEERRRDREALRFMRGVM-------DSFTHLTNFPV-PVDPSAIIFVAAKNDAYVPRHGVLSLQE 313 (348)
T ss_pred hcccccCcccccchhhccccchHHHHHHHHHHH-------HhhccccccCC-CCCCCcEEEEEecCceEechhhcchHHH
Confidence 0 0000000000000000000111111100000 00000000100 0011235678899999999988888888
Q ss_pred hCCCCeEEEEcCCCCCC-CCCCcHHHHHHHHHHHH
Q 024316 233 NYPVNEVMEIKGGDHMA-MLSDPQKLCDCLSQISL 266 (269)
Q Consensus 233 ~~~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~f~~ 266 (269)
..|+++++.++ +||.. ++-+.+.|.++|.+.++
T Consensus 314 ~WPGsEvR~l~-gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 314 IWPGSEVRYLP-GGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hCCCCeEEEec-CCcEEEeeechHHHHHHHHHHhh
Confidence 99999999998 59974 55667888888877654
No 124
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.62 E-value=1.7e-07 Score=73.98 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=106.3
Q ss_pred CceEEEecCC-C---CCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 9 EKHFVLVHGV-N---HGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 9 g~~ivlvHG~-~---~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
.+..|||||. | ..+-+-..+-+.+ ..||+|..++ +|.++....-..++.+...-|.=+++..+..+++++-|
T Consensus 67 ~klfIfIHGGYW~~g~rk~clsiv~~a~-~~gY~vasvg---Y~l~~q~htL~qt~~~~~~gv~filk~~~n~k~l~~gG 142 (270)
T KOG4627|consen 67 AKLFIFIHGGYWQEGDRKMCLSIVGPAV-RRGYRVASVG---YNLCPQVHTLEQTMTQFTHGVNFILKYTENTKVLTFGG 142 (270)
T ss_pred ccEEEEEecchhhcCchhcccchhhhhh-hcCeEEEEec---cCcCcccccHHHHHHHHHHHHHHHHHhcccceeEEEcc
Confidence 5789999997 2 2333455555555 6799998875 45554321112355555555555555554445688889
Q ss_pred eChhhHHHHHH-hhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCCCCccccccchh
Q 024316 85 HSLGGVTLALA-ADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGRE 163 (269)
Q Consensus 85 HSmGG~i~~~~-a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (269)
||.|+-.+..+ +.++..+|.+|+++|+... + +.... .....+..+.
T Consensus 143 HSaGAHLa~qav~R~r~prI~gl~l~~GvY~--------l-~EL~~-------te~g~dlgLt----------------- 189 (270)
T KOG4627|consen 143 HSAGAHLAAQAVMRQRSPRIWGLILLCGVYD--------L-RELSN-------TESGNDLGLT----------------- 189 (270)
T ss_pred cchHHHHHHHHHHHhcCchHHHHHHHhhHhh--------H-HHHhC-------CccccccCcc-----------------
Confidence 99999966665 5566679999999986422 1 10000 0000000000
Q ss_pred HHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEc
Q 024316 164 FLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIK 243 (269)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~ 243 (269)
.+.+.. ..+.-+ . ..-.++|.++++|++|..--.+..+.++.....+++..++
T Consensus 190 -----------~~~ae~----~Scdl~------~------~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f~ 242 (270)
T KOG4627|consen 190 -----------ERNAES----VSCDLW------E------YTDVTVWILVVAAEHESPKLIEQNRDFADQLRKASFTLFK 242 (270)
T ss_pred -----------cchhhh----cCccHH------H------hcCceeeeeEeeecccCcHHHHhhhhHHHHhhhcceeecC
Confidence 000000 001000 0 0012678999999999765556667777777778899999
Q ss_pred CCCCCCCCCC
Q 024316 244 GGDHMAMLSD 253 (269)
Q Consensus 244 ~~gH~~~~e~ 253 (269)
+++|.-.+|.
T Consensus 243 n~~hy~I~~~ 252 (270)
T KOG4627|consen 243 NYDHYDIIEE 252 (270)
T ss_pred CcchhhHHHH
Confidence 9999877764
No 125
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.59 E-value=1.2e-06 Score=72.06 Aligned_cols=207 Identities=19% Similarity=0.154 Sum_probs=115.5
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCc----ccc----------------cccchHHhHHHHH
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMK----RIE----------------DVHTFHAYSEPLM 68 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~----~~~----------------~~~~~~~~~~~l~ 68 (269)
-+.||--||.+.+.+.|...+. ++..||-|+.+|.||.|-|.. ++. +.|=+-....|+.
T Consensus 83 ~P~vV~fhGY~g~~g~~~~~l~-wa~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~ 161 (321)
T COG3458 83 LPAVVQFHGYGGRGGEWHDMLH-WAVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAV 161 (321)
T ss_pred cceEEEEeeccCCCCCcccccc-ccccceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHH
Confidence 3688889999999999988775 456799999999999997732 110 1111111222333
Q ss_pred ---HHHHhCC--CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccc
Q 024316 69 ---EVLASLP--AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDT 143 (269)
Q Consensus 69 ---~~i~~l~--~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (269)
+++-.+. ..+++.+-|-|-||.++..++...| +|++++.+=+.... +. +++..
T Consensus 162 ~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~d-----------f~----------r~i~~ 219 (321)
T COG3458 162 RAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLSD-----------FP----------RAIEL 219 (321)
T ss_pred HHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhccccccccccc-----------ch----------hheee
Confidence 3333342 2358999999999998888775544 89888765432211 11 01100
Q ss_pred cccccCCCCCCccccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCccEEEEEeCCCCCCC
Q 024316 144 QFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLP 223 (269)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~ 223 (269)
.. ..+ ...+-..+....+.+. .. +++-.++ +..+. ..-.++|.|+..|--|.++|
T Consensus 220 --~~----~~~-------ydei~~y~k~h~~~e~-~v----~~TL~yf--D~~n~-----A~RiK~pvL~svgL~D~vcp 274 (321)
T COG3458 220 --AT----EGP-------YDEIQTYFKRHDPKEA-EV----FETLSYF--DIVNL-----AARIKVPVLMSVGLMDPVCP 274 (321)
T ss_pred --cc----cCc-------HHHHHHHHHhcCchHH-HH----HHHHhhh--hhhhH-----HHhhccceEEeecccCCCCC
Confidence 00 000 0111111111111111 10 0000000 00000 11138999999999999999
Q ss_pred hHHHHHHHHhCCCC-eEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 224 KQFQHWMIQNYPVN-EVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 224 ~~~~~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
|..+-++.+.++.. ++++++.-+|.- -|.-..+-+..|++
T Consensus 275 PstqFA~yN~l~~~K~i~iy~~~aHe~---~p~~~~~~~~~~l~ 315 (321)
T COG3458 275 PSTQFAAYNALTTSKTIEIYPYFAHEG---GPGFQSRQQVHFLK 315 (321)
T ss_pred ChhhHHHhhcccCCceEEEeecccccc---CcchhHHHHHHHHH
Confidence 99998888877654 467777777754 34333344445554
No 126
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.59 E-value=2.2e-07 Score=75.86 Aligned_cols=164 Identities=20% Similarity=0.226 Sum_probs=83.8
Q ss_pred CceEEEecCCCCCccchHHHHHHHHh----CCCeEEEeCCCC-----CCCCCc------------c------c----ccc
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVA----GGHRVTAVDLAA-----SGINMK------------R------I----EDV 57 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~----~g~~Via~Dl~G-----~G~S~~------------~------~----~~~ 57 (269)
.+-|+++||++.++..++.+...|.+ .++..+-+|-|= -|-.+. + . ...
T Consensus 4 k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 83 (212)
T PF03959_consen 4 KPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHEY 83 (212)
T ss_dssp --EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGGG
T ss_pred CceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCcccc
Confidence 46899999999999998776665543 268887776541 111100 0 0 012
Q ss_pred cchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC--------cccceeEEEeccCCCCCCCchhhhccCcc
Q 024316 58 HTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFP--------HKISVAVFVTAFMPDTTHRPSFVLEQVPY 129 (269)
Q Consensus 58 ~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p--------~~v~~lvli~~~~~~~~~~~~~~~~~~~~ 129 (269)
..+++-.+.|.+.+++.+ .=.-|+|.|.||.++..++.... -.++-.|++++..|.
T Consensus 84 ~~~~~sl~~l~~~i~~~G--PfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~-------------- 147 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENG--PFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPP-------------- 147 (212)
T ss_dssp ---HHHHHHHHHHHHHH-----SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----E--------------
T ss_pred cCHHHHHHHHHHHHHhcC--CeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCC--------------
Confidence 356777778888887752 22668999999998777653211 123333333321110
Q ss_pred ccccCCCCcccccccccccCCCCCCccccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCc
Q 024316 130 SEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSV 209 (269)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (269)
. +. +. + . + .....++
T Consensus 148 ---------------------------~----~~------~~-----~------~----------------~-~~~~i~i 162 (212)
T PF03959_consen 148 ---------------------------D----PD------YQ-----E------L----------------Y-DEPKISI 162 (212)
T ss_dssp ---------------------------E----E-------GT-----T------T----------------T---TT---
T ss_pred ---------------------------c----hh------hh-----h------h----------------h-ccccCCC
Confidence 0 00 00 0 0 0 0011288
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHhCCC-CeEEEEcCCCCCCCCCCc
Q 024316 210 KRVYLVCEEDIGLPKQFQHWMIQNYPV-NEVMEIKGGDHMAMLSDP 254 (269)
Q Consensus 210 P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~e~p 254 (269)
|+|.|+|++|.+++++.++.+.+...+ .+++..+ .||.++..++
T Consensus 163 PtlHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~-gGH~vP~~~~ 207 (212)
T PF03959_consen 163 PTLHVIGENDPVVPPERSEALAEMFDPDARVIEHD-GGHHVPRKKE 207 (212)
T ss_dssp EEEEEEETT-SSS-HHHHHHHHHHHHHHEEEEEES-SSSS----HH
T ss_pred CeEEEEeCCCCCcchHHHHHHHHhccCCcEEEEEC-CCCcCcCChh
Confidence 999999999999999988888876655 7788887 9999887654
No 127
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.51 E-value=4.4e-07 Score=78.72 Aligned_cols=102 Identities=22% Similarity=0.184 Sum_probs=60.5
Q ss_pred CceEEEecCCCCCccc--------------h----HHHHHHHHhCCCeEEEeCCCCCCCCCcccc----cccchHHhH--
Q 024316 9 EKHFVLVHGVNHGAWC--------------W----YKLKARLVAGGHRVTAVDLAASGINMKRIE----DVHTFHAYS-- 64 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~--------------w----~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~----~~~~~~~~~-- 64 (269)
-|.||++||-+.+.+. | +.+...|+++||-|+++|.+|+|+...... ..++.+.++
T Consensus 115 ~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~ 194 (390)
T PF12715_consen 115 FPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALARN 194 (390)
T ss_dssp EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHH
T ss_pred CCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHHHH
Confidence 4789999998765521 2 235778999999999999999998653221 111222222
Q ss_pred ----------------HHHHHHHHhCCCC--CcEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 65 ----------------EPLMEVLASLPAE--EKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 65 ----------------~~l~~~i~~l~~~--~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
..+++++++++.. +++.++|+||||..++.+|+. -++|++.|+++.
T Consensus 195 ~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-DdRIka~v~~~~ 258 (390)
T PF12715_consen 195 LLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DDRIKATVANGY 258 (390)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--TT--EEEEES-
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-chhhHhHhhhhh
Confidence 1345666666432 479999999999988887755 469988877654
No 128
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.50 E-value=2.8e-07 Score=81.67 Aligned_cols=105 Identities=18% Similarity=0.303 Sum_probs=57.6
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCC-CCCCC-----Ccc---cc---------------cc---c---
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA-ASGIN-----MKR---IE---------------DV---H--- 58 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~-G~G~S-----~~~---~~---------------~~---~--- 58 (269)
=|.|||-||++.+...|..+...|+.+||=|+++|.| |.+.. +.. .. .. .
T Consensus 100 ~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (379)
T PF03403_consen 100 FPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEEEFE 179 (379)
T ss_dssp EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGGHHH
T ss_pred CCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchhHHH
Confidence 3799999999999999999999999999999999999 43321 100 00 00 0
Q ss_pred ----chHHhHHHH---HHHHHhC--C--------------------CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEE
Q 024316 59 ----TFHAYSEPL---MEVLASL--P--------------------AEEKVILVGHSLGGVTLALAADKFPHKISVAVFV 109 (269)
Q Consensus 59 ----~~~~~~~~l---~~~i~~l--~--------------------~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli 109 (269)
.++.-++++ .++|+.+ + ...++++.|||+||+.+..++.+ ..+++..|++
T Consensus 180 ~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~-d~r~~~~I~L 258 (379)
T PF03403_consen 180 LRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQ-DTRFKAGILL 258 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhh-ccCcceEEEe
Confidence 000111222 2233221 0 02369999999999977776544 4799999999
Q ss_pred eccCC
Q 024316 110 TAFMP 114 (269)
Q Consensus 110 ~~~~~ 114 (269)
++.+.
T Consensus 259 D~W~~ 263 (379)
T PF03403_consen 259 DPWMF 263 (379)
T ss_dssp S---T
T ss_pred CCccc
Confidence 98653
No 129
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.48 E-value=5.7e-05 Score=65.35 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=61.5
Q ss_pred CceEEEecCCCC---Cccch-HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHH---HhCCC-CCcE
Q 024316 9 EKHFVLVHGVNH---GAWCW-YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVL---ASLPA-EEKV 80 (269)
Q Consensus 9 g~~ivlvHG~~~---~~~~w-~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i---~~l~~-~~~v 80 (269)
.+.||++||.+. +.... ..+...+...|+.|+++|.|=.-+...+ ..+++..+.+.-+. ++++. -+++
T Consensus 79 ~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p----~~~~d~~~a~~~l~~~~~~~g~dp~~i 154 (312)
T COG0657 79 APVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFP----AALEDAYAAYRWLRANAAELGIDPSRI 154 (312)
T ss_pred CcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCCCC----chHHHHHHHHHHHHhhhHhhCCCccce
Confidence 689999999852 22333 5566666778999999999843222111 13333222222222 22321 3579
Q ss_pred EEEEeChhhHHHHHHhhhCCc----ccceeEEEecc
Q 024316 81 ILVGHSLGGVTLALAADKFPH----KISVAVFVTAF 112 (269)
Q Consensus 81 ilVGHSmGG~i~~~~a~~~p~----~v~~lvli~~~ 112 (269)
+|.|||-||.+++.++..-.+ ...+.+++.+.
T Consensus 155 ~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~ 190 (312)
T COG0657 155 AVAGDSAGGHLALALALAARDRGLPLPAAQVLISPL 190 (312)
T ss_pred EEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecc
Confidence 999999999977777644332 45677777754
No 130
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.46 E-value=7.7e-07 Score=75.49 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=57.5
Q ss_pred hCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 34 AGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 34 ~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
+.||.|+..++||++.|...+....+..+.-..+.-.|..|+ ..+++||.|+|.||..+..+|..+| .|+++|+-++
T Consensus 266 ~lgYsvLGwNhPGFagSTG~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YP-dVkavvLDAt 343 (517)
T KOG1553|consen 266 QLGYSVLGWNHPGFAGSTGLPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYP-DVKAVVLDAT 343 (517)
T ss_pred HhCceeeccCCCCccccCCCCCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCC-CceEEEeecc
Confidence 569999999999999998765444454444344444455553 3468999999999998888888888 6888877654
No 131
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.44 E-value=8.6e-07 Score=75.24 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=66.2
Q ss_pred CceEEEecCCCCCc-cchHHH---------HHHHHhCCCeEEEeCCCCCCCCCccccc-ccchHHhHHHHHHHHHhCC-C
Q 024316 9 EKHFVLVHGVNHGA-WCWYKL---------KARLVAGGHRVTAVDLAASGINMKRIED-VHTFHAYSEPLMEVLASLP-A 76 (269)
Q Consensus 9 g~~ivlvHG~~~~~-~~w~~~---------~~~L~~~g~~Via~Dl~G~G~S~~~~~~-~~~~~~~~~~l~~~i~~l~-~ 76 (269)
-|+||..|+.+.+. ..+... ...|.++||-|+..|.||.|.|+..... ...=.+...++++.|.+.+ -
T Consensus 20 ~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws 99 (272)
T PF02129_consen 20 FPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPMSPNEAQDGYDTIEWIAAQPWS 99 (272)
T ss_dssp EEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TTSHHHHHHHHHHHHHHHHCTTE
T ss_pred ccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccCChhHHHHHHHHHHHHHhCCCC
Confidence 46788888888543 222221 1127789999999999999999875422 1111223334445554443 1
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 77 EEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
..+|-++|.|++|.+.+.+|...|..+++++...+.
T Consensus 100 ~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~ 135 (272)
T PF02129_consen 100 NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGW 135 (272)
T ss_dssp EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-
T ss_pred CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccC
Confidence 348999999999999888888889999999887653
No 132
>PRK04940 hypothetical protein; Provisional
Probab=98.37 E-value=2.3e-06 Score=67.23 Aligned_cols=51 Identities=10% Similarity=-0.020 Sum_probs=36.6
Q ss_pred EEEEEeCCCCCCChHHHHHHHHhCCCC-eEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 211 RVYLVCEEDIGLPKQFQHWMIQNYPVN-EVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 211 ~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
.+++..+.|.+++.+.+.+.. .++ ++.+.+|..|-. ++=++....|.+|+.
T Consensus 127 ~~vllq~gDEvLDyr~a~~~y---~~~y~~~v~~GGdH~f--~~fe~~l~~I~~F~~ 178 (180)
T PRK04940 127 CLVILSRNDEVLDSQRTAEEL---HPYYEIVWDEEQTHKF--KNISPHLQRIKAFKT 178 (180)
T ss_pred EEEEEeCCCcccCHHHHHHHh---ccCceEEEECCCCCCC--CCHHHHHHHHHHHHh
Confidence 478889999999887765333 334 677888888854 566667777778874
No 133
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.34 E-value=1.9e-06 Score=76.85 Aligned_cols=82 Identities=22% Similarity=0.278 Sum_probs=59.3
Q ss_pred ccchHHHHHHHHhCCCeE----E-E-eCCCCCCCCCcccccccchHHhHHHHHHHHHhC--CCCCcEEEEEeChhhHHHH
Q 024316 22 AWCWYKLKARLVAGGHRV----T-A-VDLAASGINMKRIEDVHTFHAYSEPLMEVLASL--PAEEKVILVGHSLGGVTLA 93 (269)
Q Consensus 22 ~~~w~~~~~~L~~~g~~V----i-a-~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l--~~~~~vilVGHSmGG~i~~ 93 (269)
.+.|..+++.|++.||+. . + +|.|= | . ...+++...|.+.|+.. ...++|+||||||||.++.
T Consensus 64 ~~~~~~li~~L~~~GY~~~~~l~~~pYDWR~---~---~---~~~~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~ 134 (389)
T PF02450_consen 64 YWYFAKLIENLEKLGYDRGKDLFAAPYDWRL---S---P---AERDEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVAR 134 (389)
T ss_pred cchHHHHHHHHHhcCcccCCEEEEEeechhh---c---h---hhHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHH
Confidence 347999999999988843 2 3 67761 1 1 13456667777777654 1357999999999999988
Q ss_pred HHhhhCCc------ccceeEEEecc
Q 024316 94 LAADKFPH------KISVAVFVTAF 112 (269)
Q Consensus 94 ~~a~~~p~------~v~~lvli~~~ 112 (269)
.+....+. .|+++|.++++
T Consensus 135 ~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 135 YFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred HHHHhccchhhHHhhhhEEEEeCCC
Confidence 88766543 59999999864
No 134
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.22 E-value=1.6e-05 Score=65.02 Aligned_cols=50 Identities=32% Similarity=0.465 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHhCCCC--CcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 62 AYSEPLMEVLASLPAE--EKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 62 ~~~~~l~~~i~~l~~~--~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
+|.+...+.+.+.+.. +++.|+|.|.||-++..+|..+| .|+++|.+++.
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps 55 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPS 55 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCc
Confidence 4667777888877432 58999999999999999999998 99999988753
No 135
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00012 Score=59.72 Aligned_cols=244 Identities=14% Similarity=0.201 Sum_probs=133.1
Q ss_pred CCCCceEEEecCCCCCccchHHHHHHHHhC---CCeEEEeCCCCCCCCC---cc-----cccccchHHhHHHHHHHHHhC
Q 024316 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAG---GHRVTAVDLAASGINM---KR-----IEDVHTFHAYSEPLMEVLASL 74 (269)
Q Consensus 6 ~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~---g~~Via~Dl~G~G~S~---~~-----~~~~~~~~~~~~~l~~~i~~l 74 (269)
|...+-|+.|.|.+.....|.++...|-.. .++|..+-..||-.-+ +. ..+.+++++.++.=.++|+.-
T Consensus 26 ~~~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~ 105 (301)
T KOG3975|consen 26 GEDKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEY 105 (301)
T ss_pred CCCceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHh
Confidence 333467888999999999999988887322 2568888888886433 11 124568999999888999874
Q ss_pred -CCCCcEEEEEeChhhHHHHHHhh--hCCcccceeEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCC
Q 024316 75 -PAEEKVILVGHSLGGVTLALAAD--KFPHKISVAVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDAS 151 (269)
Q Consensus 75 -~~~~~vilVGHSmGG~i~~~~a~--~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (269)
+.+.+++++|||.|+++...... +-...|.+.+++-|..-.-..++-. .++.+ ...++.......
T Consensus 106 ~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTIerM~eSpnG--~~~t~-------~l~~~~hv~~lt--- 173 (301)
T KOG3975|consen 106 VPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTIERMHESPNG--IRLTK-------VLRYLPHVVSLT--- 173 (301)
T ss_pred CCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchHHHHhcCCCc--eEeee-------eeeeehhhhhee---
Confidence 56679999999999997776643 2234688888886532211111100 00000 011111100000
Q ss_pred CCCccccccchhHHHH-----HHhcCCCHHhHH-HHHHhcCCCcc-----cc-ccccccccCCCCCC---CCccEEEEEe
Q 024316 152 NPSHISMLFGREFLTI-----KIYQLCPPEDLE-LAKMLVRPGSM-----FI-DNLSKESKFSDEGY---GSVKRVYLVC 216 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~---~~~P~l~i~g 216 (269)
.. ..+.+-+.+++- .+.....+.++- ....+..++.. .. ..|..-... +..+ ...-..+..|
T Consensus 174 ~y--i~~~~lp~~ir~~Li~~~l~~~n~p~e~l~tal~l~h~~v~rn~v~la~qEm~eV~~~-d~e~~een~d~l~Fyyg 250 (301)
T KOG3975|consen 174 SY--IYWILLPGFIRFILIKFMLCGSNGPQEFLSTALFLTHPQVVRNSVGLAAQEMEEVTTR-DIEYCEENLDSLWFYYG 250 (301)
T ss_pred ee--eeeecChHHHHHHHHHHhcccCCCcHHHHhhHHHhhcHHHHHHHhhhchHHHHHHHHh-HHHHHHhcCcEEEEEcc
Confidence 00 011111222211 111111111110 00011111000 00 001110000 0000 1234677899
Q ss_pred CCCCCCChHHHHHHHHhCCCCeE--EEEcCCCCCCCCCCcHHHHHHHHHHH
Q 024316 217 EEDIGLPKQFQHWMIQNYPVNEV--MEIKGGDHMAMLSDPQKLCDCLSQIS 265 (269)
Q Consensus 217 ~~D~~~~~~~~~~~~~~~~~~~~--~~i~~~gH~~~~e~p~~~~~~l~~f~ 265 (269)
..|.++|.+....+.++.|.-++ -+ +++.|..-....+.-+..+.+.+
T Consensus 251 t~DgW~p~~~~d~~kdd~~eed~~Lde-dki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 251 TNDGWVPSHYYDYYKDDVPEEDLKLDE-DKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred CCCCCcchHHHHHHhhhcchhceeecc-ccCCcceeecccHHHHHHHHHhh
Confidence 99999999999999999985544 33 77999998888888888776643
No 136
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.16 E-value=4.5e-06 Score=73.88 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=75.3
Q ss_pred CCceEEEecCCCCCccchHH------HHHHHHhCCCeEEEeCCCCCCCCCccc----c-c----ccchHHhH-----HHH
Q 024316 8 EEKHFVLVHGVNHGAWCWYK------LKARLVAGGHRVTAVDLAASGINMKRI----E-D----VHTFHAYS-----EPL 67 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~------~~~~L~~~g~~Via~Dl~G~G~S~~~~----~-~----~~~~~~~~-----~~l 67 (269)
..|+|+|.||+-+++..|-. +.-.|++.||+|=.-+.||--.|.+.. . . ..++++++ +.+
T Consensus 72 ~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~I 151 (403)
T KOG2624|consen 72 KRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMI 151 (403)
T ss_pred CCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHHH
Confidence 36899999999999999943 455678899999999999966665321 0 1 12444433 333
Q ss_pred HHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCc---ccceeEEEeccC
Q 024316 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPH---KISVAVFVTAFM 113 (269)
Q Consensus 68 ~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~---~v~~lvli~~~~ 113 (269)
.-+++.. +.++...||||-|..+...+...+|+ +|+..++++|.+
T Consensus 152 dyIL~~T-~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~ 199 (403)
T KOG2624|consen 152 DYILEKT-GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAA 199 (403)
T ss_pred HHHHHhc-cccceEEEEEEccchhheehhcccchhhhhhheeeeecchh
Confidence 3334444 34789999999999977777666664 799999998765
No 137
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.15 E-value=4.9e-05 Score=65.64 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=68.1
Q ss_pred CceEEEecCCCCCcc---chHHHHHHHHhCCCeEEEeCCCC--CCCCCcc---------------ccc--c---------
Q 024316 9 EKHFVLVHGVNHGAW---CWYKLKARLVAGGHRVTAVDLAA--SGINMKR---------------IED--V--------- 57 (269)
Q Consensus 9 g~~ivlvHG~~~~~~---~w~~~~~~L~~~g~~Via~Dl~G--~G~S~~~---------------~~~--~--------- 57 (269)
...||+|||++.++. .=..+-..|.+.||.++++.+|- ...++.. ... .
T Consensus 87 ~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (310)
T PF12048_consen 87 QGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEA 166 (310)
T ss_pred ceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHh
Confidence 459999999998875 23556667788899999998887 1111100 000 0
Q ss_pred cchHHhHHHHHHH-------HHhCCCCCcEEEEEeChhhHHHHHHhhhC-CcccceeEEEeccCCC
Q 024316 58 HTFHAYSEPLMEV-------LASLPAEEKVILVGHSLGGVTLALAADKF-PHKISVAVFVTAFMPD 115 (269)
Q Consensus 58 ~~~~~~~~~l~~~-------i~~l~~~~~vilVGHSmGG~i~~~~a~~~-p~~v~~lvli~~~~~~ 115 (269)
.....+...+.+- ..+. +.++++||||+.|+..+..+.... +..+++||+|++..|.
T Consensus 167 ~~~~~~~~~~~ari~Aa~~~~~~~-~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~ 231 (310)
T PF12048_consen 167 EAREAYEERLFARIEAAIAFAQQQ-GGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQ 231 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCc
Confidence 1223333333333 3333 345699999999999666665444 4569999999987664
No 138
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.11 E-value=2.4e-05 Score=66.84 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=58.6
Q ss_pred CCCceEEEecCCCCCccc----------hHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHh--C
Q 024316 7 MEEKHFVLVHGVNHGAWC----------WYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS--L 74 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~----------w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~--l 74 (269)
++++-|++.-|.+..-+. |..++.. .+-+|+.++.||.|.|..... ..++-.-.+.+++.++. .
T Consensus 135 ~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~---~~aNvl~fNYpGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~ 210 (365)
T PF05677_consen 135 KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKE---LGANVLVFNYPGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQ 210 (365)
T ss_pred CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHH---cCCcEEEECCCccccCCCCCC-HHHHHHHHHHHHHHHHhccc
Confidence 346788888887655444 4444443 456899999999999987652 23444444445555542 1
Q ss_pred C-CCCcEEEEEeChhhHHHHHHhhh
Q 024316 75 P-AEEKVILVGHSLGGVTLALAADK 98 (269)
Q Consensus 75 ~-~~~~vilVGHSmGG~i~~~~a~~ 98 (269)
+ .-+++++-|||+||.+++.++.+
T Consensus 211 G~ka~~Ii~yG~SLGG~Vqa~AL~~ 235 (365)
T PF05677_consen 211 GPKAKNIILYGHSLGGGVQAEALKK 235 (365)
T ss_pred CCChheEEEeeccccHHHHHHHHHh
Confidence 1 12579999999999998886655
No 139
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.10 E-value=1.7e-05 Score=68.58 Aligned_cols=90 Identities=28% Similarity=0.255 Sum_probs=61.9
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCC--CCCCccc------------ccccchHHhHHHHHHH-----
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAAS--GINMKRI------------EDVHTFHAYSEPLMEV----- 70 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~--G~S~~~~------------~~~~~~~~~~~~l~~~----- 70 (269)
|.|||=||.+.....+..+.+.|++.||-|.++|.||. |..+... +..+++..+.+.|.+.
T Consensus 72 PlvvlshG~Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~ 151 (365)
T COG4188 72 PLVVLSHGSGSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPA 151 (365)
T ss_pred CeEEecCCCCCCccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcc
Confidence 67888999999999999999999999999999999994 3332211 1122344444444444
Q ss_pred HHhCCCCCcEEEEEeChhhHHHHHHhhhC
Q 024316 71 LASLPAEEKVILVGHSLGGVTLALAADKF 99 (269)
Q Consensus 71 i~~l~~~~~vilVGHSmGG~i~~~~a~~~ 99 (269)
+..--.-.+|.++|||+||+.+...+...
T Consensus 152 l~~~ld~~~Vgv~GhS~GG~T~m~laGA~ 180 (365)
T COG4188 152 LAGRLDPQRVGVLGHSFGGYTAMELAGAE 180 (365)
T ss_pred cccccCccceEEEecccccHHHHHhcccc
Confidence 11100224899999999999777665443
No 140
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.09 E-value=5.1e-05 Score=62.05 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=62.4
Q ss_pred CceEEEecCCCCCccchHHH--HHHH-HhCCCeEEEeCCCCCCCCCc--------ccccccchHHhHHHHHHHHHhCC-C
Q 024316 9 EKHFVLVHGVNHGAWCWYKL--KARL-VAGGHRVTAVDLAASGINMK--------RIEDVHTFHAYSEPLMEVLASLP-A 76 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~--~~~L-~~~g~~Via~Dl~G~G~S~~--------~~~~~~~~~~~~~~l~~~i~~l~-~ 76 (269)
-|.||++||.+.++..+... ...| .+.||-|+.|+-........ ......+...+++-+..+++... .
T Consensus 16 ~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD 95 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYNID 95 (220)
T ss_pred CCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhcccC
Confidence 47899999999988755432 1123 23478888888542111110 00000111222222222222322 2
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 77 EEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
-.+|.+.|+|.||+.+..++..+|+.|.++..+++.
T Consensus 96 ~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~ 131 (220)
T PF10503_consen 96 PSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGV 131 (220)
T ss_pred CCceeeEEECHHHHHHHHHHHhCCccceEEEeeccc
Confidence 247999999999999999999999999998877764
No 141
>PLN02606 palmitoyl-protein thioesterase
Probab=98.09 E-value=3.6e-05 Score=65.18 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=69.8
Q ss_pred CceEEEecCCC--CCccchHHHHHHHHh-CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCC-CcEEEEE
Q 024316 9 EKHFVLVHGVN--HGAWCWYKLKARLVA-GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAE-EKVILVG 84 (269)
Q Consensus 9 g~~ivlvHG~~--~~~~~w~~~~~~L~~-~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~vilVG 84 (269)
..|||+.||.+ +++.....+.+.+.+ .|+.++.+- -|-|.. ..-...+.+.++.+.+.|.+.+.. .-+.+||
T Consensus 26 ~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~~---~s~~~~~~~Qv~~vce~l~~~~~L~~G~naIG 101 (306)
T PLN02606 26 SVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGVQ---DSLFMPLRQQASIACEKIKQMKELSEGYNIVA 101 (306)
T ss_pred CCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCcc---cccccCHHHHHHHHHHHHhcchhhcCceEEEE
Confidence 46999999999 666678888888853 377666655 232221 111135555555555555543222 2499999
Q ss_pred eChhhHHHHHHhhhCCc--ccceeEEEeccCC
Q 024316 85 HSLGGVTLALAADKFPH--KISVAVFVTAFMP 114 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p~--~v~~lvli~~~~~ 114 (269)
+|-||.++-.+++++|+ +|+.+|-+++...
T Consensus 102 fSQGglflRa~ierc~~~p~V~nlISlggph~ 133 (306)
T PLN02606 102 ESQGNLVARGLIEFCDNAPPVINYVSLGGPHA 133 (306)
T ss_pred EcchhHHHHHHHHHCCCCCCcceEEEecCCcC
Confidence 99999998888999987 5999999987543
No 142
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.5e-05 Score=74.34 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCceEEEecCCCCCccchHHHHHHH----------------HhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHH
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARL----------------VAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVL 71 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L----------------~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i 71 (269)
+|.||+||.|.-.|-.-=+.++..- ....|+-.+.|+-+ +...=+..++.+.++-|.+.|
T Consensus 88 sGIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnE----e~tAm~G~~l~dQtEYV~dAI 163 (973)
T KOG3724|consen 88 SGIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNE----EFTAMHGHILLDQTEYVNDAI 163 (973)
T ss_pred CCceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccc----hhhhhccHhHHHHHHHHHHHH
Confidence 4789999999644432112222111 11234666777653 011001135555555555544
Q ss_pred H---hCC-C--CC------cEEEEEeChhhHHHHHHhhh---CCcccceeEEEeccC
Q 024316 72 A---SLP-A--EE------KVILVGHSLGGVTLALAADK---FPHKISVAVFVTAFM 113 (269)
Q Consensus 72 ~---~l~-~--~~------~vilVGHSmGG~i~~~~a~~---~p~~v~~lvli~~~~ 113 (269)
. ++- + .. .|+||||||||+++..++.. .++.|.-++.++++.
T Consensus 164 k~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH 220 (973)
T KOG3724|consen 164 KYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPH 220 (973)
T ss_pred HHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcc
Confidence 4 331 1 12 39999999999987776532 356677788777643
No 143
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.07 E-value=1.7e-05 Score=64.77 Aligned_cols=103 Identities=20% Similarity=0.190 Sum_probs=70.7
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCC-----eEEEeCCCCC----CCCCc----c------cccccchHHhHHHHHHH
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGH-----RVTAVDLAAS----GINMK----R------IEDVHTFHAYSEPLMEV 70 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~-----~Via~Dl~G~----G~S~~----~------~~~~~~~~~~~~~l~~~ 70 (269)
-|.+||||.+.++.+....+.+|...+. =++..|--|. |.=++ + .+...+..+++..+..+
T Consensus 46 iPTIfIhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~~ 125 (288)
T COG4814 46 IPTIFIHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKKA 125 (288)
T ss_pred cceEEEecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHHH
Confidence 4899999999999999999999976531 2345555551 11011 1 12334667777777777
Q ss_pred HHhC---CCCCcEEEEEeChhhHHHHHHhhhCCc-----ccceeEEEecc
Q 024316 71 LASL---PAEEKVILVGHSLGGVTLALAADKFPH-----KISVAVFVTAF 112 (269)
Q Consensus 71 i~~l---~~~~~vilVGHSmGG~i~~~~a~~~p~-----~v~~lvli~~~ 112 (269)
+..| -+..++-+|||||||.....++..+.+ .+.++|.+++.
T Consensus 126 msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gp 175 (288)
T COG4814 126 MSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGP 175 (288)
T ss_pred HHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccc
Confidence 7765 246789999999999976666655432 48899988864
No 144
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.05 E-value=3.8e-06 Score=70.17 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHhHHHHHHHHHhCCCC-C-cEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 61 HAYSEPLMEVLASLPAE-E-KVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~~~-~-~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
+.+.++|...|++.-.. . +..|.||||||..+..++.++|+.+.+++.+++.
T Consensus 96 ~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~ 149 (251)
T PF00756_consen 96 TFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGA 149 (251)
T ss_dssp HHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEE
T ss_pred eehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcc
Confidence 45667888888864221 1 2799999999999999999999999999999864
No 145
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.03 E-value=4.4e-05 Score=68.50 Aligned_cols=103 Identities=13% Similarity=0.207 Sum_probs=64.6
Q ss_pred CceEEEecCCCCCcc-chHHHHHHHHhCCC----eEEEeCCCCC-CCCCcccccccchHHhHHHHHHHHHhCC----CCC
Q 024316 9 EKHFVLVHGVNHGAW-CWYKLKARLVAGGH----RVTAVDLAAS-GINMKRIEDVHTFHAYSEPLMEVLASLP----AEE 78 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-~w~~~~~~L~~~g~----~Via~Dl~G~-G~S~~~~~~~~~~~~~~~~l~~~i~~l~----~~~ 78 (269)
-|.|+|+||-..... .-..++..|.+.|. -|+.+|-... ..+........-...++++|+-.|++.- .-+
T Consensus 209 ~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y~~~~d~~ 288 (411)
T PRK10439 209 RPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAIAPFSDDAD 288 (411)
T ss_pred CCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 478899999542111 11334555655564 3567775321 1111111111123455678888887641 224
Q ss_pred cEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 79 KVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
+.+|.|+||||+.+..++.++|+++.+++.+++
T Consensus 289 ~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sg 321 (411)
T PRK10439 289 RTVVAGQSFGGLAALYAGLHWPERFGCVLSQSG 321 (411)
T ss_pred ceEEEEEChHHHHHHHHHHhCcccccEEEEecc
Confidence 689999999999999999999999999998875
No 146
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.97 E-value=0.00051 Score=61.88 Aligned_cols=97 Identities=23% Similarity=0.274 Sum_probs=66.5
Q ss_pred ceEEEe-----cCCCCCccch-HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC----CCCCc
Q 024316 10 KHFVLV-----HGVNHGAWCW-YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL----PAEEK 79 (269)
Q Consensus 10 ~~ivlv-----HG~~~~~~~w-~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l----~~~~~ 79 (269)
.|+|.| ||-+-+...= .++-..|.+ ||.||-+.+. .+ +. ...|+++.+.....+++.+ +...+
T Consensus 69 rP~vViDPRAGHGpGIGGFK~dSevG~AL~~-GHPvYFV~F~----p~-P~-pgQTl~DV~~ae~~Fv~~V~~~hp~~~k 141 (581)
T PF11339_consen 69 RPFVVIDPRAGHGPGIGGFKPDSEVGVALRA-GHPVYFVGFF----PE-PE-PGQTLEDVMRAEAAFVEEVAERHPDAPK 141 (581)
T ss_pred CCeEEeCCCCCCCCCccCCCcccHHHHHHHc-CCCeEEEEec----CC-CC-CCCcHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 466665 5554444332 346667754 9999988764 11 22 2247887777666666654 22238
Q ss_pred EEEEEeChhhHHHHHHhhhCCcccceeEEEeccC
Q 024316 80 VILVGHSLGGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
++|||..-||+.+.++|+.+|+++.-+|+-.+++
T Consensus 142 p~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPl 175 (581)
T PF11339_consen 142 PNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPL 175 (581)
T ss_pred ceEEeccHHHHHHHHHHhcCcCccCceeecCCCc
Confidence 9999999999999999999999998888776644
No 147
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=97.96 E-value=0.0025 Score=55.46 Aligned_cols=100 Identities=23% Similarity=0.249 Sum_probs=63.7
Q ss_pred CceEEEecCCCC--C---ccchHHHHHHH-HhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHh----C-CCC
Q 024316 9 EKHFVLVHGVNH--G---AWCWYKLKARL-VAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS----L-PAE 77 (269)
Q Consensus 9 g~~ivlvHG~~~--~---~~~w~~~~~~L-~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~----l-~~~ 77 (269)
-+.||+.||.+. + +..|..+...+ ++.+=-|+++|.|=-=+.+.+. .++|-.+.+.-+.+. . ..-
T Consensus 90 ~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa----~y~D~~~Al~w~~~~~~~~~~~D~ 165 (336)
T KOG1515|consen 90 LPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFPA----AYDDGWAALKWVLKNSWLKLGADP 165 (336)
T ss_pred ceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCCc----cchHHHHHHHHHHHhHHHHhCCCc
Confidence 478999998752 2 34677788777 3445678899998322222221 334444444333332 2 133
Q ss_pred CcEEEEEeChhhHHHHHHhhh------CCcccceeEEEecc
Q 024316 78 EKVILVGHSLGGVTLALAADK------FPHKISVAVFVTAF 112 (269)
Q Consensus 78 ~~vilVGHSmGG~i~~~~a~~------~p~~v~~lvli~~~ 112 (269)
++|.|.|=|-||-++...|.+ .+-++++.|++-|.
T Consensus 166 ~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~ 206 (336)
T KOG1515|consen 166 SRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPF 206 (336)
T ss_pred ccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecc
Confidence 679999999999987776543 24578899999764
No 148
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.92 E-value=4.1e-05 Score=60.44 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhC---CCCCcEEEEEeChhhHHHHHHhhhCC--
Q 024316 26 YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASL---PAEEKVILVGHSLGGVTLALAADKFP-- 100 (269)
Q Consensus 26 ~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l---~~~~~vilVGHSmGG~i~~~~a~~~p-- 100 (269)
+.+...|+++|+.|+.+|-+-+=.+.+ |-++.++||.++|+.. -+.++++|||.|+|+-++-....+-|
T Consensus 19 ~~~a~~l~~~G~~VvGvdsl~Yfw~~r------tP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~ 92 (192)
T PF06057_consen 19 KQIAEALAKQGVPVVGVDSLRYFWSER------TPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAA 92 (192)
T ss_pred HHHHHHHHHCCCeEEEechHHHHhhhC------CHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHH
Confidence 568899999999999999765544443 4455566666666543 14578999999999987776666666
Q ss_pred --cccceeEEEec
Q 024316 101 --HKISVAVFVTA 111 (269)
Q Consensus 101 --~~v~~lvli~~ 111 (269)
++|+.++++++
T Consensus 93 ~r~~v~~v~Ll~p 105 (192)
T PF06057_consen 93 LRARVAQVVLLSP 105 (192)
T ss_pred HHhheeEEEEecc
Confidence 56888888864
No 149
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=97.91 E-value=5.9e-05 Score=54.18 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=52.9
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
+.|+|+|.++.|.++|.+.++.+++.+++++++++++.||-.....=.-+.+++.+|+.+
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 589999999999999999999999999999999999999999874446667888888753
No 150
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.86 E-value=5.4e-05 Score=68.96 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=68.9
Q ss_pred CceEEEecCCCCCccchHHHHH-----------H-------HHhCCCeEEEeCCC-CCCCCCccc-ccccchHHhHHHHH
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKA-----------R-------LVAGGHRVTAVDLA-ASGINMKRI-EDVHTFHAYSEPLM 68 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~-----------~-------L~~~g~~Via~Dl~-G~G~S~~~~-~~~~~~~~~~~~l~ 68 (269)
.|.|+.++|.+..+..+..+.+ . +.+ ..+|+-+|.| |+|.|-... +...+.++.++++.
T Consensus 77 ~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~~~~l~iDqP~G~G~S~~~~~~~~~~~~~~a~d~~ 155 (462)
T PTZ00472 77 APVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-EAYVIYVDQPAGVGFSYADKADYDHNESEVSEDMY 155 (462)
T ss_pred CCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-ccCeEEEeCCCCcCcccCCCCCCCCChHHHHHHHH
Confidence 5899999999877766533221 1 112 2588999987 888875422 12245678888888
Q ss_pred HHHHhC----C--CCCcEEEEEeChhhHHHHHHhhhC----C------cccceeEEEeccC
Q 024316 69 EVLASL----P--AEEKVILVGHSLGGVTLALAADKF----P------HKISVAVFVTAFM 113 (269)
Q Consensus 69 ~~i~~l----~--~~~~vilVGHSmGG~i~~~~a~~~----p------~~v~~lvli~~~~ 113 (269)
++++.. + ...++.|+||||||..+..+|.+. . =.++++++-++..
T Consensus 156 ~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~ 216 (462)
T PTZ00472 156 NFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLT 216 (462)
T ss_pred HHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecccc
Confidence 888742 1 346899999999999766655432 1 1367887777643
No 151
>PLN02633 palmitoyl protein thioesterase family protein
Probab=97.81 E-value=0.00017 Score=61.18 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=67.3
Q ss_pred CceEEEecCCCCCccc--hHHHHHHHHh-CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCC-CcEEEEE
Q 024316 9 EKHFVLVHGVNHGAWC--WYKLKARLVA-GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAE-EKVILVG 84 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~--w~~~~~~L~~-~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~vilVG 84 (269)
..|+|+-||.|.+... -..+.+.+.+ .|..|+++-. |.+.. ..-...+.+.++.+.+.|.+.+.. .-+.+||
T Consensus 25 ~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i---g~~~~-~s~~~~~~~Qve~vce~l~~~~~l~~G~naIG 100 (314)
T PLN02633 25 SVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI---GNGVG-DSWLMPLTQQAEIACEKVKQMKELSQGYNIVG 100 (314)
T ss_pred CCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE---CCCcc-ccceeCHHHHHHHHHHHHhhchhhhCcEEEEE
Confidence 4699999999877653 4444444433 2566776654 33321 112335566666666555543222 2499999
Q ss_pred eChhhHHHHHHhhhCCc--ccceeEEEeccC
Q 024316 85 HSLGGVTLALAADKFPH--KISVAVFVTAFM 113 (269)
Q Consensus 85 HSmGG~i~~~~a~~~p~--~v~~lvli~~~~ 113 (269)
||-||.++-.+++++|+ +|+.+|-+++..
T Consensus 101 fSQGGlflRa~ierc~~~p~V~nlISlggph 131 (314)
T PLN02633 101 RSQGNLVARGLIEFCDGGPPVYNYISLAGPH 131 (314)
T ss_pred EccchHHHHHHHHHCCCCCCcceEEEecCCC
Confidence 99999999888999987 699999998754
No 152
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.81 E-value=0.00031 Score=64.09 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=46.7
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhC-CCCeEEEEcCCCCCCCCCC---------cHHHHHHHHHHHHh
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNY-PVNEVMEIKGGDHMAMLSD---------PQKLCDCLSQISLK 267 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~---------p~~~~~~l~~f~~~ 267 (269)
+.|+|+|.|.+|..++++..+.+.+++ ...+++++++++|.+-.-+ -.+|...+.+.+.+
T Consensus 304 k~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~e 373 (784)
T KOG3253|consen 304 KQPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKE 373 (784)
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHH
Confidence 779999999999999999999888765 3668999999999987665 24555555444443
No 153
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0011 Score=63.94 Aligned_cols=196 Identities=16% Similarity=0.103 Sum_probs=115.4
Q ss_pred ceEEEecCCCCCc-----c--chHHHHHHHHhCCCeEEEeCCCCCCCCCcc--------cccccchHHhHHHHHHHHHhC
Q 024316 10 KHFVLVHGVNHGA-----W--CWYKLKARLVAGGHRVTAVDLAASGINMKR--------IEDVHTFHAYSEPLMEVLASL 74 (269)
Q Consensus 10 ~~ivlvHG~~~~~-----~--~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~--------~~~~~~~~~~~~~l~~~i~~l 74 (269)
|.+|.+||.+.|. + .|..+. ....|+-|+.+|-||.|..... . +.....|....+..+++..
T Consensus 527 Pllv~~yGGP~sq~v~~~~~~~~~~~~--~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~l-G~~ev~D~~~~~~~~~~~~ 603 (755)
T KOG2100|consen 527 PLLVVVYGGPGSQSVTSKFSVDWNEVV--VSSRGFAVLQVDGRGSGGYGWDFRSALPRNL-GDVEVKDQIEAVKKVLKLP 603 (755)
T ss_pred CEEEEecCCCCcceeeeeEEecHHHHh--hccCCeEEEEEcCCCcCCcchhHHHHhhhhc-CCcchHHHHHHHHHHHhcc
Confidence 6788899998632 2 476653 4567899999999998765421 1 2246667666666666654
Q ss_pred C-CCCcEEEEEeChhhHHHHHHhhhCCcccce-eEEEeccCCCCCCCchhhhccCccccccCCCCcccccccccccCCCC
Q 024316 75 P-AEEKVILVGHSLGGVTLALAADKFPHKISV-AVFVTAFMPDTTHRPSFVLEQVPYSEKMGKEDDSWLDTQFSQCDASN 152 (269)
Q Consensus 75 ~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~-lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (269)
- .-+++.+.|+|.||.+++..+...|+.+-+ .|.++|+.... ..... -..+++.. + .
T Consensus 604 ~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~----------~yds~----~terymg~------p-~ 662 (755)
T KOG2100|consen 604 FIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL----------YYDST----YTERYMGL------P-S 662 (755)
T ss_pred cccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee----------eeccc----ccHhhcCC------C-c
Confidence 1 124799999999999999888888755554 47776542210 00000 00011000 0 0
Q ss_pred CCccccccchhHHHHHHhcCCCHHhHHHHHHhcCCCccccccccccccCCCCCCCCcc-EEEEEeCCCCCCChHHHHHHH
Q 024316 153 PSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVK-RVYLVCEEDIGLPKQFQHWMI 231 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~ 231 (269)
..... |. .. .+. ......+-| -|+++|+.|.-+..+.+..+.
T Consensus 663 ------~~~~~------y~----------e~--~~~-------------~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~ 705 (755)
T KOG2100|consen 663 ------ENDKG------YE----------ES--SVS-------------SPANNIKTPKLLLIHGTEDDNVHFQQSAILI 705 (755)
T ss_pred ------cccch------hh----------hc--ccc-------------chhhhhccCCEEEEEcCCcCCcCHHHHHHHH
Confidence 00000 00 00 000 001112334 488999999988887766665
Q ss_pred HhC----CCCeEEEEcCCCCCCCCCCc-HHHHHHHHHHHH
Q 024316 232 QNY----PVNEVMEIKGGDHMAMLSDP-QKLCDCLSQISL 266 (269)
Q Consensus 232 ~~~----~~~~~~~i~~~gH~~~~e~p-~~~~~~l~~f~~ 266 (269)
+.+ -..++.++|+..|..-.-.+ ..+...+..|+.
T Consensus 706 ~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~ 745 (755)
T KOG2100|consen 706 KALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLR 745 (755)
T ss_pred HHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHH
Confidence 432 13678899999998866554 566666777765
No 154
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.80 E-value=0.00075 Score=56.10 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhC--C--CCeEEEEcCCCCCCCCC-CcHHHHHHHHHHH
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNY--P--VNEVMEIKGGDHMAMLS-DPQKLCDCLSQIS 265 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~--~--~~~~~~i~~~gH~~~~e-~p~~~~~~l~~f~ 265 (269)
+.|.++|.++.|.+++.+..++.++.. . ..+.+.+++++|.-|+- +|++-.+.|.+|.
T Consensus 178 ~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 178 RCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 578999999999999999888876543 2 24567889999998875 7899999988873
No 155
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.00011 Score=63.22 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=54.6
Q ss_pred CCCceEEEecCCCCCccc-hHHHHHHHHhCCC--eEEEeCCCCCCCC-----CcccccccchHHhHHHHHHHHHhCCCCC
Q 024316 7 MEEKHFVLVHGVNHGAWC-WYKLKARLVAGGH--RVTAVDLAASGIN-----MKRIEDVHTFHAYSEPLMEVLASLPAEE 78 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~-w~~~~~~L~~~g~--~Via~Dl~G~G~S-----~~~~~~~~~~~~~~~~l~~~i~~l~~~~ 78 (269)
.++..+|||||++.+-.. =.+.++-....|+ -.+.+.+|..|.- ++.. ..++-+++...|-.+.++. ..+
T Consensus 114 ~~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS-~~~Sr~aLe~~lr~La~~~-~~~ 191 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRES-TNYSRPALERLLRYLATDK-PVK 191 (377)
T ss_pred CCCeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhh-hhhhHHHHHHHHHHHHhCC-CCc
Confidence 345689999999866542 2233443334444 5577788865531 2211 3355555555555554444 457
Q ss_pred cEEEEEeChhhHHHHHHhh
Q 024316 79 KVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~ 97 (269)
++.|++||||.+++..+..
T Consensus 192 ~I~ilAHSMGtwl~~e~Lr 210 (377)
T COG4782 192 RIYLLAHSMGTWLLMEALR 210 (377)
T ss_pred eEEEEEecchHHHHHHHHH
Confidence 8999999999997776544
No 156
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=97.79 E-value=0.00088 Score=57.38 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCccEEEEEeCCCCCCChHHHHHHHHhC--CC---CeEEEEcCCCCCCC
Q 024316 207 GSVKRVYLVCEEDIGLPKQFQHWMIQNY--PV---NEVMEIKGGDHMAM 250 (269)
Q Consensus 207 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~---~~~~~i~~~gH~~~ 250 (269)
.++|+++.+|..|.++|+..++..+++. .+ .+++.+++.+|..-
T Consensus 218 P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~ 266 (290)
T PF03583_consen 218 PTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGA 266 (290)
T ss_pred CCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhh
Confidence 3689999999999999999998877653 23 35567788999764
No 157
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=97.76 E-value=4e-05 Score=64.30 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=58.4
Q ss_pred CceEEEecCCCCCc---cchHHHHHHHHhC--CCeEEEeCCCCCCCC-CcccccccchHHhHHHHHHHHHhCCCC-CcEE
Q 024316 9 EKHFVLVHGVNHGA---WCWYKLKARLVAG--GHRVTAVDLAASGIN-MKRIEDVHTFHAYSEPLMEVLASLPAE-EKVI 81 (269)
Q Consensus 9 g~~ivlvHG~~~~~---~~w~~~~~~L~~~--g~~Via~Dl~G~G~S-~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~vi 81 (269)
-.|||+.||.+.+. ..+..+...+++. |=-|+++++ |-|.+ +....-...+.+.++.+.+.|.+.+.. .-+.
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~i-g~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L~~G~~ 83 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEI-GNDPSEDVENSFFGNVNDQVEQVCEQLANDPELANGFN 83 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--S-SSSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGGTT-EE
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEE-CCCcchhhhhhHHHHHHHHHHHHHHHHhhChhhhccee
Confidence 46999999999764 3577766655432 446777776 32221 111111135567777777777654222 3599
Q ss_pred EEEeChhhHHHHHHhhhCCc-ccceeEEEeccC
Q 024316 82 LVGHSLGGVTLALAADKFPH-KISVAVFVTAFM 113 (269)
Q Consensus 82 lVGHSmGG~i~~~~a~~~p~-~v~~lvli~~~~ 113 (269)
+||+|-||.++-.+++++|+ .|+.+|.+++..
T Consensus 84 ~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph 116 (279)
T PF02089_consen 84 AIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPH 116 (279)
T ss_dssp EEEETCHHHHHHHHHHH-TSS-EEEEEEES--T
T ss_pred eeeeccccHHHHHHHHHCCCCCceeEEEecCcc
Confidence 99999999988888888875 699999998753
No 158
>COG3150 Predicted esterase [General function prediction only]
Probab=97.67 E-value=0.0002 Score=54.94 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=55.7
Q ss_pred EEEecCCCCCccchHHHH--HHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhh
Q 024316 12 FVLVHGVNHGAWCWYKLK--ARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGG 89 (269)
Q Consensus 12 ivlvHG~~~~~~~w~~~~--~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG 89 (269)
|+.||||.+|+.+-+.+. .++.+ |-|-++.|..-. -.++...++.|.++|.++ .++.+.|||-|+||
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~--------~~~~i~y~~p~l--~h~p~~a~~ele~~i~~~-~~~~p~ivGssLGG 70 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDE--------DVRDIEYSTPHL--PHDPQQALKELEKAVQEL-GDESPLIVGSSLGG 70 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhc--------cccceeeecCCC--CCCHHHHHHHHHHHHHHc-CCCCceEEeecchH
Confidence 899999999999886644 23332 333333332222 137788889999999988 45679999999999
Q ss_pred HHHHHHhhhCC
Q 024316 90 VTLALAADKFP 100 (269)
Q Consensus 90 ~i~~~~a~~~p 100 (269)
.-+...+.++.
T Consensus 71 Y~At~l~~~~G 81 (191)
T COG3150 71 YYATWLGFLCG 81 (191)
T ss_pred HHHHHHHHHhC
Confidence 98888877753
No 159
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.62 E-value=0.00057 Score=57.39 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=70.9
Q ss_pred ceEEEecCCCCCcc------chHHHHHHHHhCCCeEEEeCC-------CCCCCC----CcccccccchHHhHHHHHHHHH
Q 024316 10 KHFVLVHGVNHGAW------CWYKLKARLVAGGHRVTAVDL-------AASGIN----MKRIEDVHTFHAYSEPLMEVLA 72 (269)
Q Consensus 10 ~~ivlvHG~~~~~~------~w~~~~~~L~~~g~~Via~Dl-------~G~G~S----~~~~~~~~~~~~~~~~l~~~i~ 72 (269)
+.||.+||-..++. -|+.+++ ..||-|..||- .|.|.+ +++. +..+...+++-+..++.
T Consensus 62 pLvv~LHG~~~sgag~~~~sg~d~lAd---~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~~~-g~ddVgflr~lva~l~~ 137 (312)
T COG3509 62 PLVVVLHGSGGSGAGQLHGTGWDALAD---REGFLVAYPDGYDRAWNANGCGNWFGPADRRR-GVDDVGFLRALVAKLVN 137 (312)
T ss_pred CEEEEEecCCCChHHhhcccchhhhhc---ccCcEEECcCccccccCCCcccccCCcccccC-CccHHHHHHHHHHHHHH
Confidence 58999999987775 4666665 34899998842 223333 2222 23345555555555555
Q ss_pred hCCCC-CcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCC
Q 024316 73 SLPAE-EKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMP 114 (269)
Q Consensus 73 ~l~~~-~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~ 114 (269)
+.+.+ ++|.+.|-|-||..+..++..+|+.+.++..+++..+
T Consensus 138 ~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~ 180 (312)
T COG3509 138 EYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLA 180 (312)
T ss_pred hcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccC
Confidence 55321 3799999999999999999999999999999987663
No 160
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.62 E-value=0.0004 Score=58.28 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=57.6
Q ss_pred ceEEEecCCCCCccc-hHHHHHHH-------HhCCCeEEEeCC-CCCCCCCcccccccchHHhHHHHHHHHHhCCC--CC
Q 024316 10 KHFVLVHGVNHGAWC-WYKLKARL-------VAGGHRVTAVDL-AASGINMKRIEDVHTFHAYSEPLMEVLASLPA--EE 78 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~-w~~~~~~L-------~~~g~~Via~Dl-~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~--~~ 78 (269)
|.++|+||.+..+.. ...+...+ -+.+.-|+||-. +=+-.++... ..-+....+-+.+.+.+..+ ..
T Consensus 192 PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d~e~~t--~~~l~~~idli~~vlas~ynID~s 269 (387)
T COG4099 192 PLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFADSEEKT--LLYLIEKIDLILEVLASTYNIDRS 269 (387)
T ss_pred cEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccccccccccccc--chhHHHHHHHHHHHHhhccCcccc
Confidence 789999999987764 32222111 111223444431 1111122110 11223333333333333222 24
Q ss_pred cEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 79 KVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
++-++|.|+||.-++.++.++|+.+.+.++||+
T Consensus 270 RIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG 302 (387)
T COG4099 270 RIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAG 302 (387)
T ss_pred eEEEEeecCcchhhHHHHHhCchhhheeeeecC
Confidence 799999999999999999999999999999985
No 161
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.60 E-value=0.00015 Score=66.43 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=56.6
Q ss_pred cchHHHHHHHHhCCCeEEEeCCCCCCCCCccc-ccccchHHhHHHHHHHHHhC---CCCCcEEEEEeChhhHHHHHHhhh
Q 024316 23 WCWYKLKARLVAGGHRVTAVDLAASGINMKRI-EDVHTFHAYSEPLMEVLASL---PAEEKVILVGHSLGGVTLALAADK 98 (269)
Q Consensus 23 ~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~-~~~~~~~~~~~~l~~~i~~l---~~~~~vilVGHSmGG~i~~~~a~~ 98 (269)
+.|..+++.|++.||. .-|+.|....=|.. .....-+.|-..|.+.||.. .++++|+||||||||.++..+...
T Consensus 156 ~vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~w 233 (642)
T PLN02517 156 FVWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKW 233 (642)
T ss_pred eeHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHh
Confidence 5789999999999996 34444433221111 11123356666666666643 235799999999999988876542
Q ss_pred CC---------------cccceeEEEecc
Q 024316 99 FP---------------HKISVAVFVTAF 112 (269)
Q Consensus 99 ~p---------------~~v~~lvli~~~ 112 (269)
.. ..|++.|.|+++
T Consensus 234 v~~~~~~gG~gG~~W~dKyI~s~I~Iagp 262 (642)
T PLN02517 234 VEAPAPMGGGGGPGWCAKHIKAVMNIGGP 262 (642)
T ss_pred ccccccccCCcchHHHHHHHHHheecccc
Confidence 11 237888888764
No 162
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.57 E-value=0.00013 Score=64.79 Aligned_cols=82 Identities=24% Similarity=0.375 Sum_probs=57.4
Q ss_pred cchHHHHHHHHhCCCe----E--EEeCCC-CCCCCCcccccccchHHhHHHHHHHHHh---CCCCCcEEEEEeChhhHHH
Q 024316 23 WCWYKLKARLVAGGHR----V--TAVDLA-ASGINMKRIEDVHTFHAYSEPLMEVLAS---LPAEEKVILVGHSLGGVTL 92 (269)
Q Consensus 23 ~~w~~~~~~L~~~g~~----V--ia~Dl~-G~G~S~~~~~~~~~~~~~~~~l~~~i~~---l~~~~~vilVGHSmGG~i~ 92 (269)
+.|..+++.|..-||. + ..+|+| ++= +....+.|-..|...||. +.+++||+||+|||||.+.
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~-------~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~ 196 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWRLSYH-------NSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYV 196 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchhhccC-------ChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHH
Confidence 5899999999888885 3 467887 221 122446666677766664 3245899999999999999
Q ss_pred HHHhhhCCc--------ccceeEEEec
Q 024316 93 ALAADKFPH--------KISVAVFVTA 111 (269)
Q Consensus 93 ~~~a~~~p~--------~v~~lvli~~ 111 (269)
.++....++ -|++.|-+++
T Consensus 197 lyFl~w~~~~~~~W~~k~I~sfvnig~ 223 (473)
T KOG2369|consen 197 LYFLKWVEAEGPAWCDKYIKSFVNIGA 223 (473)
T ss_pred HHHHhcccccchhHHHHHHHHHHccCc
Confidence 988876665 2555555543
No 163
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.57 E-value=0.00014 Score=56.01 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHhCC---CCCcEEEEEeChhhHHHHHHhhhCCc----ccceeEEEecc
Q 024316 61 HAYSEPLMEVLASLP---AEEKVILVGHSLGGVTLALAADKFPH----KISVAVFVTAF 112 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~---~~~~vilVGHSmGG~i~~~~a~~~p~----~v~~lvli~~~ 112 (269)
....+.+...+++.. ...+++++||||||.++..++..... ++..++..+++
T Consensus 8 ~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p 66 (153)
T cd00741 8 RSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPP 66 (153)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCC
Confidence 344445555554431 34689999999999999888766543 56667766653
No 164
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00038 Score=63.96 Aligned_cols=99 Identities=18% Similarity=0.141 Sum_probs=72.9
Q ss_pred CceEEEecCCCC-----CccchHHH--HHHHHhCCCeEEEeCCCCCCCCCccc-------ccccchHHhHHHHHHHHHhC
Q 024316 9 EKHFVLVHGVNH-----GAWCWYKL--KARLVAGGHRVTAVDLAASGINMKRI-------EDVHTFHAYSEPLMEVLASL 74 (269)
Q Consensus 9 g~~ivlvHG~~~-----~~~~w~~~--~~~L~~~g~~Via~Dl~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~l 74 (269)
=|++++|=|.+. +++.|... +..|+..||-|+.+|-||.-.....- =....++|.++-+.-++++.
T Consensus 642 Yptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~ 721 (867)
T KOG2281|consen 642 YPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQT 721 (867)
T ss_pred CceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhc
Confidence 467888888764 33445333 33678899999999999976554220 02347789998888888877
Q ss_pred C--CCCcEEEEEeChhhHHHHHHhhhCCcccceeE
Q 024316 75 P--AEEKVILVGHSLGGVTLALAADKFPHKISVAV 107 (269)
Q Consensus 75 ~--~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lv 107 (269)
+ ...+|.+-|+|+||..+.+...++|+-++..|
T Consensus 722 gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAI 756 (867)
T KOG2281|consen 722 GFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAI 756 (867)
T ss_pred CcccchheeEeccccccHHHHHHhhcCcceeeEEe
Confidence 4 23589999999999988888889998887655
No 165
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=97.51 E-value=0.00017 Score=60.82 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=35.1
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCC
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAAS 47 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~ 47 (269)
|.|||-||++.+-..|..+--.|+.+||-|.|+..|-+
T Consensus 119 PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD~ 156 (399)
T KOG3847|consen 119 PVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRDR 156 (399)
T ss_pred cEEEEecccccchhhHHHHhhhHhhCceEEEEeecccC
Confidence 68999999999999999999999999999999998754
No 166
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=97.50 E-value=0.00028 Score=65.04 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=61.0
Q ss_pred CCceEEEecCCCCC---ccchHHHHHHHHhC-C-CeEEEeCCC-C---CCCCCcc-cccccchHHhH---HHHHHHHHhC
Q 024316 8 EEKHFVLVHGVNHG---AWCWYKLKARLVAG-G-HRVTAVDLA-A---SGINMKR-IEDVHTFHAYS---EPLMEVLASL 74 (269)
Q Consensus 8 ~g~~ivlvHG~~~~---~~~w~~~~~~L~~~-g-~~Via~Dl~-G---~G~S~~~-~~~~~~~~~~~---~~l~~~i~~l 74 (269)
.-+.||+|||.+.. ...+ ....|.+. + +-|++++.| | +..+... ......+.|.. +.|.+-|+..
T Consensus 94 ~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~f 171 (493)
T cd00312 94 SLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAF 171 (493)
T ss_pred CCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 35789999996422 2222 12334333 3 889999998 3 3332211 11122334433 3445556665
Q ss_pred CCC-CcEEEEEeChhhHHHHHHhhh--CCcccceeEEEeccC
Q 024316 75 PAE-EKVILVGHSLGGVTLALAADK--FPHKISVAVFVTAFM 113 (269)
Q Consensus 75 ~~~-~~vilVGHSmGG~i~~~~a~~--~p~~v~~lvli~~~~ 113 (269)
+++ .+|+|.|||.||..+...+.. .+.+++++|++++..
T Consensus 172 ggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~ 213 (493)
T cd00312 172 GGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSA 213 (493)
T ss_pred CCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCc
Confidence 433 479999999999966665433 345799999888643
No 167
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=97.48 E-value=0.00044 Score=55.11 Aligned_cols=99 Identities=14% Similarity=0.279 Sum_probs=66.7
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCC-------------------CCCCCcccccccchHHhHHHHHHH
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA-------------------SGINMKRIEDVHTFHAYSEPLMEV 70 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G-------------------~G~S~~~~~~~~~~~~~~~~l~~~ 70 (269)
.+||++||.+.++..|.+++..|.-..-+-|+|.-|- .+.+. ..+..++..-++.+..+
T Consensus 4 atIi~LHglGDsg~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~--~~d~~~~~~aa~~i~~L 81 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDA--PEDEEGLHRAADNIANL 81 (206)
T ss_pred EEEEEEecCCCCCccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCccc--chhhhHHHHHHHHHHHH
Confidence 5899999999999999888887754444566663321 11111 11334666677777777
Q ss_pred HHhCC--C--CCcEEEEEeChhhHHHHHHhhhCCcccceeEEEe
Q 024316 71 LASLP--A--EEKVILVGHSLGGVTLALAADKFPHKISVAVFVT 110 (269)
Q Consensus 71 i~~l~--~--~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~ 110 (269)
|+... + ..++++=|.||||+.+.+.+..+|..+.+.+-..
T Consensus 82 i~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s 125 (206)
T KOG2112|consen 82 IDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALS 125 (206)
T ss_pred HHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccc
Confidence 77541 1 2358899999999999888877776666665443
No 168
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0019 Score=53.43 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=68.3
Q ss_pred ceEEEecCCCCCccc--hHHHHHHHHhC-CCeEEEeCCCCCC--CCCcccccccchHHhHHHHHHHHHhCCCC-CcEEEE
Q 024316 10 KHFVLVHGVNHGAWC--WYKLKARLVAG-GHRVTAVDLAASG--INMKRIEDVHTFHAYSEPLMEVLASLPAE-EKVILV 83 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~--w~~~~~~L~~~-g~~Via~Dl~G~G--~S~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~vilV 83 (269)
.|+|+.||.+.++.. ...+.+.+.+. |..|+++|. |-| .| ....+.+.++.+.+.+...+.. .-..+|
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei-g~g~~~s-----~l~pl~~Qv~~~ce~v~~m~~lsqGyniv 97 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI-GDGIKDS-----SLMPLWEQVDVACEKVKQMPELSQGYNIV 97 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe-cCCcchh-----hhccHHHHHHHHHHHHhcchhccCceEEE
Confidence 799999999988776 67777776543 668899987 333 22 1234556666665555543222 249999
Q ss_pred EeChhhHHHHHHhhhCCc-ccceeEEEecc
Q 024316 84 GHSLGGVTLALAADKFPH-KISVAVFVTAF 112 (269)
Q Consensus 84 GHSmGG~i~~~~a~~~p~-~v~~lvli~~~ 112 (269)
|.|-||+++-.+++..++ .|+.+|-++++
T Consensus 98 g~SQGglv~Raliq~cd~ppV~n~ISL~gP 127 (296)
T KOG2541|consen 98 GYSQGGLVARALIQFCDNPPVKNFISLGGP 127 (296)
T ss_pred EEccccHHHHHHHHhCCCCCcceeEeccCC
Confidence 999999988888877764 68888888764
No 169
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.35 E-value=0.0014 Score=59.41 Aligned_cols=105 Identities=20% Similarity=0.113 Sum_probs=60.1
Q ss_pred CceEEEecCCCCCcc-ch--HHHHHHHHh-CCCeEEEeCCCCCCCCCcccc------cccchHHhHHHHHHHHHhCC---
Q 024316 9 EKHFVLVHGVNHGAW-CW--YKLKARLVA-GGHRVTAVDLAASGINMKRIE------DVHTFHAYSEPLMEVLASLP--- 75 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-~w--~~~~~~L~~-~g~~Via~Dl~G~G~S~~~~~------~~~~~~~~~~~l~~~i~~l~--- 75 (269)
+.||+|.-|.=.+.. .| ..++..|++ .|=-|+++..|=+|.|-...+ .-.|.+.-.+|++.+|+.+.
T Consensus 28 ~gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 28 GGPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp TSEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 456666666533332 12 112333322 233689999999999963221 11266666677777776431
Q ss_pred ---CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccC
Q 024316 76 ---AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 76 ---~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
...|+|++|=|+||++++.+-.++|+.|.+.+..++++
T Consensus 108 ~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv 148 (434)
T PF05577_consen 108 NTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPV 148 (434)
T ss_dssp TTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--C
T ss_pred cCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEecccee
Confidence 23489999999999988888889999999999887654
No 170
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.34 E-value=0.00043 Score=52.28 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=27.7
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhh
Q 024316 61 HAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADK 98 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~ 98 (269)
+...+.|.+++++.+ ..++++.||||||.++..++..
T Consensus 48 ~~~~~~l~~~~~~~~-~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 48 DQILDALKELVEKYP-DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHST-TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-CccchhhccchHHHHHHHHHHh
Confidence 355566777666653 4689999999999988887654
No 171
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.28 E-value=0.00067 Score=54.63 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=71.4
Q ss_pred ceEEEecCCCCCccc--h-HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCC---CcEEEE
Q 024316 10 KHFVLVHGVNHGAWC--W-YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAE---EKVILV 83 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~--w-~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~---~~vilV 83 (269)
.-||||-|++.+--. | ..+...|-+.+|..+-+-++.+ -..-.+.++.+.++++..+++.+.+. ++|+|+
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ss----y~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~ 112 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSS----YNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLV 112 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccc----ccccccccccccHHHHHHHHHHhhccCcccceEEE
Confidence 478999999876542 3 6677788888999999988742 11123457888888999999866322 389999
Q ss_pred EeChhhH-HHHHH-hhhCCcccceeEEEecc
Q 024316 84 GHSLGGV-TLALA-ADKFPHKISVAVFVTAF 112 (269)
Q Consensus 84 GHSmGG~-i~~~~-a~~~p~~v~~lvli~~~ 112 (269)
|||-|-- |..++ -+..|..|++.|+.+++
T Consensus 113 GhSTGcQdi~yYlTnt~~~r~iraaIlqApV 143 (299)
T KOG4840|consen 113 GHSTGCQDIMYYLTNTTKDRKIRAAILQAPV 143 (299)
T ss_pred ecCccchHHHHHHHhccchHHHHHHHHhCcc
Confidence 9999999 44444 23457778888877654
No 172
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0037 Score=50.10 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred CceEEEecCCCC-CccchHH---------------HHHHHHhCCCeEEEeCCC---CCCCCCccc-ccccchHHhHHH-H
Q 024316 9 EKHFVLVHGVNH-GAWCWYK---------------LKARLVAGGHRVTAVDLA---ASGINMKRI-EDVHTFHAYSEP-L 67 (269)
Q Consensus 9 g~~ivlvHG~~~-~~~~w~~---------------~~~~L~~~g~~Via~Dl~---G~G~S~~~~-~~~~~~~~~~~~-l 67 (269)
.+.+|||||-|. .+.-|.+ .+.+-.+.||.|+..+-- -+-++.+.+ ....|-.+.+.. -
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 468999999873 3334532 122334669999988643 122221111 011122233332 3
Q ss_pred HHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCc--ccceeEEEecc
Q 024316 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPH--KISVAVFVTAF 112 (269)
Q Consensus 68 ~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~--~v~~lvli~~~ 112 (269)
..++... .-+.+.+|.||.||.....+..++|+ +|.++.+-++.
T Consensus 181 ~~~v~pa-~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 181 KNIVLPA-KAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHhccc-CcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 3344333 34689999999999988888888884 56666666553
No 173
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.25 E-value=0.0087 Score=48.42 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=43.7
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHh---CC--CCeEEEEcCCCCCCCC-----CCcH------HHHHHHHHHHHhh
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQN---YP--VNEVMEIKGGDHMAML-----SDPQ------KLCDCLSQISLKY 268 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~---~~--~~~~~~i~~~gH~~~~-----e~p~------~~~~~l~~f~~~~ 268 (269)
+.|+++++++.|..+|++......+. .+ .+++++++|.+|-.+. +.|+ +..+.+..|+++|
T Consensus 164 k~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y 240 (242)
T KOG3043|consen 164 KAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHY 240 (242)
T ss_pred CCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999987665443 33 3479999999998773 4443 3334445555554
No 174
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=97.18 E-value=0.001 Score=59.69 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=64.1
Q ss_pred CceEEEecCCC----CCccchHHHHHHHHhCC-CeEEEeCCC-C---------CCCCCcccccccchHHhH---HHHHHH
Q 024316 9 EKHFVLVHGVN----HGAWCWYKLKARLVAGG-HRVTAVDLA-A---------SGINMKRIEDVHTFHAYS---EPLMEV 70 (269)
Q Consensus 9 g~~ivlvHG~~----~~~~~w~~~~~~L~~~g-~~Via~Dl~-G---------~G~S~~~~~~~~~~~~~~---~~l~~~ 70 (269)
-|.+|+|||.+ +++.-|..-. .|+++| .=|++++.| | .+..+...++ ..+.|.+ +-|.+-
T Consensus 94 ~PVmV~IHGG~y~~Gs~s~~~ydgs-~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n-~Gl~DqilALkWV~~N 171 (491)
T COG2272 94 LPVMVYIHGGGYIMGSGSEPLYDGS-ALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASN-LGLLDQILALKWVRDN 171 (491)
T ss_pred CcEEEEEeccccccCCCcccccChH-HHHhcCCEEEEEeCcccccceeeehhhcccccccccc-ccHHHHHHHHHHHHHH
Confidence 48999999984 4444454433 577777 666777765 3 2222222222 3555554 355677
Q ss_pred HHhCCCC-CcEEEEEeChhhHHHHHH-hh-hCCcccceeEEEeccC
Q 024316 71 LASLPAE-EKVILVGHSLGGVTLALA-AD-KFPHKISVAVFVTAFM 113 (269)
Q Consensus 71 i~~l~~~-~~vilVGHSmGG~i~~~~-a~-~~p~~v~~lvli~~~~ 113 (269)
|++.+++ .+|+|.|+|-||+++... |. .....+.++|+.++..
T Consensus 172 Ie~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~ 217 (491)
T COG2272 172 IEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAA 217 (491)
T ss_pred HHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCC
Confidence 8888654 379999999999954433 32 2235788888888654
No 175
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.15 E-value=0.0013 Score=54.14 Aligned_cols=96 Identities=21% Similarity=0.192 Sum_probs=56.2
Q ss_pred eEEEecCCCCCcc---chHHHHHHHHhCCCeEEEeCCC-CCCCCCcccccccchHHhHHHHHHHHHhCCC----CCcEEE
Q 024316 11 HFVLVHGVNHGAW---CWYKLKARLVAGGHRVTAVDLA-ASGINMKRIEDVHTFHAYSEPLMEVLASLPA----EEKVIL 82 (269)
Q Consensus 11 ~ivlvHG~~~~~~---~w~~~~~~L~~~g~~Via~Dl~-G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~----~~~vil 82 (269)
.|-||=|..-++. .|+.+.+.|++.||-|||.-.. |+.+-.... . -+..+-..+ +.+....+ .-|+.-
T Consensus 19 vihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A~-~--~~~~f~~~~-~~L~~~~~~~~~~lP~~~ 94 (250)
T PF07082_consen 19 VIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIAR-E--VWERFERCL-RALQKRGGLDPAYLPVYG 94 (250)
T ss_pred EEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHHH-H--HHHHHHHHH-HHHHHhcCCCcccCCeee
Confidence 4445556654443 6899999999999999987653 332211100 0 112222222 22222111 136778
Q ss_pred EEeChhhHHHHHHhhhCCcccceeEEEe
Q 024316 83 VGHSLGGVTLALAADKFPHKISVAVFVT 110 (269)
Q Consensus 83 VGHSmGG~i~~~~a~~~p~~v~~lvli~ 110 (269)
||||||.-.-..+...++..-++.|+|+
T Consensus 95 vGHSlGcklhlLi~s~~~~~r~gniliS 122 (250)
T PF07082_consen 95 VGHSLGCKLHLLIGSLFDVERAGNILIS 122 (250)
T ss_pred eecccchHHHHHHhhhccCcccceEEEe
Confidence 9999999976666656655557788886
No 176
>COG0627 Predicted esterase [General function prediction only]
Probab=97.01 E-value=0.0035 Score=54.14 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=64.6
Q ss_pred ceEEEecCCCCCccchHH---HHHHHHhCCCeEEEeCCC--------------CCCCC---Ccc----cccccchHHhH-
Q 024316 10 KHFVLVHGVNHGAWCWYK---LKARLVAGGHRVTAVDLA--------------ASGIN---MKR----IEDVHTFHAYS- 64 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~---~~~~L~~~g~~Via~Dl~--------------G~G~S---~~~----~~~~~~~~~~~- 64 (269)
+.+.++||..++...|.. +-......|.-++++|-. |-+.| +-. ....+.+++|.
T Consensus 55 pV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tfl~ 134 (316)
T COG0627 55 PVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETFLT 134 (316)
T ss_pred CEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHHHH
Confidence 688889999888644422 333334556777777443 32222 100 00125555554
Q ss_pred HHHHHHHHhC-CCCC---cEEEEEeChhhHHHHHHhhhCCcccceeEEEeccCC
Q 024316 65 EPLMEVLASL-PAEE---KVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMP 114 (269)
Q Consensus 65 ~~l~~~i~~l-~~~~---~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~~ 114 (269)
.+|-+.+++- +... +..++||||||.-+...|.++|++++.+.-.++.+.
T Consensus 135 ~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~ 188 (316)
T COG0627 135 QELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILS 188 (316)
T ss_pred hhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccc
Confidence 4555455543 2122 677899999999888889999999998877766543
No 177
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=96.98 E-value=0.0015 Score=51.53 Aligned_cols=51 Identities=27% Similarity=0.356 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHhCC----CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 62 AYSEPLMEVLASLP----AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 62 ~~~~~l~~~i~~l~----~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
+-+..|.++++.|. ...+.++||||+|+.++..++.+.+..++.+|++.++
T Consensus 89 ~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSP 143 (177)
T PF06259_consen 89 AGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSP 143 (177)
T ss_pred HHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCC
Confidence 33445555555442 2357999999999999988877767899999999863
No 178
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0034 Score=50.61 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=49.2
Q ss_pred CCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCCCCCCc--HHHHHHHHHHHHh
Q 024316 207 GSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDP--QKLCDCLSQISLK 267 (269)
Q Consensus 207 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p--~~~~~~l~~f~~~ 267 (269)
.++|+|.|.|+.|.++|.+.++.+++..+++.+..=+ .||..+..++ +.+++.|..|+.+
T Consensus 162 i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~Hp-ggH~VP~~~~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 162 LSTPSLHIFGETDTIVPSERSEQLAESFKDATVLEHP-GGHIVPNKAKYKEKIADFIQSFLQE 223 (230)
T ss_pred CCCCeeEEecccceeecchHHHHHHHhcCCCeEEecC-CCccCCCchHHHHHHHHHHHHHHHh
Confidence 3889999999999999999999999999988655556 9999998886 5666666665543
No 179
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=96.88 E-value=0.0021 Score=59.16 Aligned_cols=81 Identities=21% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHHhCCCeEEEeCCCCCCCCCcccccccc-hHHhHHHHHHHHHhCC-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEE
Q 024316 31 RLVAGGHRVTAVDLAASGINMKRIEDVHT-FHAYSEPLMEVLASLP-AEEKVILVGHSLGGVTLALAADKFPHKISVAVF 108 (269)
Q Consensus 31 ~L~~~g~~Via~Dl~G~G~S~~~~~~~~~-~~~~~~~l~~~i~~l~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvl 108 (269)
.+.++||-|+-.|.||.|.|+...+...+ =.+...|+++-|.+.+ -+.+|-..|-|++|...+++|+..|..+++++-
T Consensus 75 ~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p 154 (563)
T COG2936 75 WFAAQGYAVVNQDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAP 154 (563)
T ss_pred eeecCceEEEEecccccccCCcccceeccccccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeecc
Confidence 46788999999999999999976433333 2233446667776663 246999999999999888888787877877765
Q ss_pred Eec
Q 024316 109 VTA 111 (269)
Q Consensus 109 i~~ 111 (269)
.++
T Consensus 155 ~~~ 157 (563)
T COG2936 155 TEG 157 (563)
T ss_pred ccc
Confidence 554
No 180
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.86 E-value=0.0022 Score=52.90 Aligned_cols=22 Identities=45% Similarity=0.675 Sum_probs=18.6
Q ss_pred CCcEEEEEeChhhHHHHHHhhh
Q 024316 77 EEKVILVGHSLGGVTLALAADK 98 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~ 98 (269)
..++++.||||||+++..++..
T Consensus 127 ~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 127 DYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred CceEEEEccCHHHHHHHHHHHH
Confidence 4689999999999988887653
No 181
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.75 E-value=0.0029 Score=52.65 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhC-C-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 63 YSEPLMEVLASL-P-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 63 ~~~~l~~~i~~l-~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
+.++|.-+|++. . .-++-.++||||||+++..+...+|+.+.+.+++++.
T Consensus 120 L~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPS 171 (264)
T COG2819 120 LTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPS 171 (264)
T ss_pred HHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecch
Confidence 344555666652 1 2246899999999999999888999999999988864
No 182
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=96.73 E-value=0.0088 Score=48.52 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=51.4
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEE-EeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVT-AVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Vi-a~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
...|||--||+.+.....++. + ..+|.|+ ++|.+-. +++. + +. ..+.+.|||+||
T Consensus 11 ~~LilfF~GWg~d~~~f~hL~--~-~~~~D~l~~yDYr~l-----------~~d~---~----~~---~y~~i~lvAWSm 66 (213)
T PF04301_consen 11 KELILFFAGWGMDPSPFSHLI--L-PENYDVLICYDYRDL-----------DFDF---D----LS---GYREIYLVAWSM 66 (213)
T ss_pred CeEEEEEecCCCChHHhhhcc--C-CCCccEEEEecCccc-----------cccc---c----cc---cCceEEEEEEeH
Confidence 468999999999988776653 1 2356664 6676521 1111 1 11 347899999999
Q ss_pred hhHHHHHHhhhCCcccceeEEEecc
Q 024316 88 GGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 88 GG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
|=+++..+.... +++.-|.|++.
T Consensus 67 GVw~A~~~l~~~--~~~~aiAINGT 89 (213)
T PF04301_consen 67 GVWAANRVLQGI--PFKRAIAINGT 89 (213)
T ss_pred HHHHHHHHhccC--CcceeEEEECC
Confidence 999888775443 46666767754
No 183
>KOG3101 consensus Esterase D [General function prediction only]
Probab=96.69 E-value=0.0039 Score=49.96 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=64.4
Q ss_pred cCCCCceEEEecCCCCCccchHH---HHHHHHhCCCeEEEeCCC--CC---CCCCc----------------ccccccch
Q 024316 5 VGMEEKHFVLVHGVNHGAWCWYK---LKARLVAGGHRVTAVDLA--AS---GINMK----------------RIEDVHTF 60 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~~w~~---~~~~L~~~g~~Via~Dl~--G~---G~S~~----------------~~~~~~~~ 60 (269)
.|+.-|++.++-|+.++...+-. .-..-.++|.-|++||-. |- |.++. +-...|.|
T Consensus 40 ~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrM 119 (283)
T KOG3101|consen 40 RGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRM 119 (283)
T ss_pred cCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhH
Confidence 34555788899999888765411 111224568899999873 42 22220 00123566
Q ss_pred HHhH-HHHHHHHHhC--C-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEe
Q 024316 61 HAYS-EPLMEVLASL--P-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT 110 (269)
Q Consensus 61 ~~~~-~~l~~~i~~l--~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~ 110 (269)
.+|+ .+|.+++..- + ...++-+.||||||.=+...+.++|++.+.+-..+
T Consensus 120 YdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFA 173 (283)
T KOG3101|consen 120 YDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFA 173 (283)
T ss_pred HHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccc
Confidence 6665 4666666621 1 12368999999999966666678898887764333
No 184
>PLN02162 triacylglycerol lipase
Probab=96.67 E-value=0.0045 Score=55.52 Aligned_cols=37 Identities=38% Similarity=0.450 Sum_probs=27.4
Q ss_pred hHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhh
Q 024316 60 FHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 60 ~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~ 97 (269)
+.++.+.|.+++++. ...++++.||||||++|..+|.
T Consensus 261 y~~I~~~L~~lL~k~-p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 261 YYTIRQMLRDKLARN-KNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHHhC-CCceEEEEecChHHHHHHHHHH
Confidence 345556667777665 3468999999999998888653
No 185
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.66 E-value=0.0039 Score=51.23 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC----cccceeEEEec
Q 024316 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFP----HKISVAVFVTA 111 (269)
Q Consensus 66 ~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p----~~v~~lvli~~ 111 (269)
-+..+++..+ +++++.|||+||..|.++|...+ ++|.++...++
T Consensus 74 yl~~~~~~~~--~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 74 YLKKIAKKYP--GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHhCC--CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 3444444442 46999999999999988876643 57778777765
No 186
>PLN00413 triacylglycerol lipase
Probab=96.55 E-value=0.006 Score=54.90 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=29.0
Q ss_pred hHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhh
Q 024316 60 FHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 60 ~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~ 97 (269)
..+..+.|.+++++. ...++++.||||||+++..+|.
T Consensus 267 yy~i~~~Lk~ll~~~-p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 267 YYTILRHLKEIFDQN-PTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHHHC-CCCeEEEEecCHHHHHHHHHHH
Confidence 345667788888776 3468999999999998888763
No 187
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=96.40 E-value=0.0087 Score=55.48 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=57.6
Q ss_pred CceEEEecCCCC--Ccc--chHHHHHHHHhCCCeEEEeCCC----CCCCCCcc-cc-cccchHHhHH---HHHHHHHhCC
Q 024316 9 EKHFVLVHGVNH--GAW--CWYKLKARLVAGGHRVTAVDLA----ASGINMKR-IE-DVHTFHAYSE---PLMEVLASLP 75 (269)
Q Consensus 9 g~~ivlvHG~~~--~~~--~w~~~~~~L~~~g~~Via~Dl~----G~G~S~~~-~~-~~~~~~~~~~---~l~~~i~~l~ 75 (269)
-|.+|+|||.+. ++. ....-...+...+.=|+++..| |+-.++.. .. .++.+.|... -|.+-|.+.|
T Consensus 125 lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FG 204 (535)
T PF00135_consen 125 LPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAFG 204 (535)
T ss_dssp EEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGGT
T ss_pred cceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhhcc
Confidence 379999999742 222 2223333445567788888887 33222211 11 3445555553 5556667775
Q ss_pred CC-CcEEEEEeChhhHHHHHH-hh-hCCcccceeEEEecc
Q 024316 76 AE-EKVILVGHSLGGVTLALA-AD-KFPHKISVAVFVTAF 112 (269)
Q Consensus 76 ~~-~~vilVGHSmGG~i~~~~-a~-~~p~~v~~lvli~~~ 112 (269)
++ ++|+|.|||-||..+... .. ....++++.|+.++.
T Consensus 205 GDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 205 GDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp EEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred cCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 44 369999999999954443 32 234689999999874
No 188
>PLN02454 triacylglycerol lipase
Probab=96.36 E-value=0.0056 Score=54.40 Aligned_cols=19 Identities=47% Similarity=0.660 Sum_probs=16.7
Q ss_pred cEEEEEeChhhHHHHHHhh
Q 024316 79 KVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~ 97 (269)
++++.||||||+++..+|.
T Consensus 229 sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 229 SIVLTGHSLGASLATLAAF 247 (414)
T ss_pred eEEEEecCHHHHHHHHHHH
Confidence 3999999999999888874
No 189
>PLN02571 triacylglycerol lipase
Probab=96.32 E-value=0.0054 Score=54.52 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHhCCCC-CcEEEEEeChhhHHHHHHhh
Q 024316 61 HAYSEPLMEVLASLPAE-EKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~~~-~~vilVGHSmGG~i~~~~a~ 97 (269)
+++.++|..+++..+.. .++++.||||||++|..+|.
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~ 245 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAV 245 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHH
Confidence 34556666666655321 26899999999998888764
No 190
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=96.16 E-value=0.074 Score=46.89 Aligned_cols=57 Identities=7% Similarity=0.088 Sum_probs=48.0
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCCCC-eEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYPVN-EVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
++|+++|.|..|....|.....+-..+|+. .++.+|+++|..-. ..+.+.|..|...
T Consensus 262 ~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~ 319 (367)
T PF10142_consen 262 TMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNR 319 (367)
T ss_pred CccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHH
Confidence 899999999999999999999998888865 47788999998876 6666777777654
No 191
>PLN02408 phospholipase A1
Probab=96.03 E-value=0.0098 Score=52.15 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCC-CcEEEEEeChhhHHHHHHhh
Q 024316 64 SEPLMEVLASLPAE-EKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 64 ~~~l~~~i~~l~~~-~~vilVGHSmGG~i~~~~a~ 97 (269)
.++|.++++..+.. .++++.||||||+++..+|.
T Consensus 185 l~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~ 219 (365)
T PLN02408 185 REEIARLLQSYGDEPLSLTITGHSLGAALATLTAY 219 (365)
T ss_pred HHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHH
Confidence 34555666655321 25999999999998888764
No 192
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.99 E-value=0.0056 Score=53.74 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=52.2
Q ss_pred CCceEEEecCCCC-CccchHHHHHHHHhCCCeEEEeCCCCC-CCCCcccccccch-HHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 8 EEKHFVLVHGVNH-GAWCWYKLKARLVAGGHRVTAVDLAAS-GINMKRIEDVHTF-HAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 8 ~g~~ivlvHG~~~-~~~~w~~~~~~L~~~g~~Via~Dl~G~-G~S~~~~~~~~~~-~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
+...+||+||+.. +...|...+..... .+.=..+..+|+ |..-.+.+...-+ ...++++.+.+... ..+++-.||
T Consensus 79 ~~HLvVlthGi~~~~~~~~~~~~~~~~k-k~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~-si~kISfvg 156 (405)
T KOG4372|consen 79 PKHLVVLTHGLHGADMEYWKEKIEQMTK-KMPDKLIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDY-SIEKISFVG 156 (405)
T ss_pred CceEEEeccccccccHHHHHHHHHhhhc-CCCcceEeeeccccchhhccccceeeecccHHHHhhhhhcc-ccceeeeee
Confidence 3568999999987 56778888877754 343224444443 3333332222111 23444555554444 247899999
Q ss_pred eChhhHHHHHHh
Q 024316 85 HSLGGVTLALAA 96 (269)
Q Consensus 85 HSmGG~i~~~~a 96 (269)
||+||+++.++.
T Consensus 157 hSLGGLvar~AI 168 (405)
T KOG4372|consen 157 HSLGGLVARYAI 168 (405)
T ss_pred eecCCeeeeEEE
Confidence 999999766553
No 193
>PLN02934 triacylglycerol lipase
Probab=95.99 E-value=0.01 Score=53.87 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHh
Q 024316 61 HAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAA 96 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a 96 (269)
+.....+.+++++. ...++++.||||||+++..+|
T Consensus 305 ~~v~~~lk~ll~~~-p~~kIvVTGHSLGGALAtLaA 339 (515)
T PLN02934 305 YAVRSKLKSLLKEH-KNAKFVVTGHSLGGALAILFP 339 (515)
T ss_pred HHHHHHHHHHHHHC-CCCeEEEeccccHHHHHHHHH
Confidence 45666777777776 446899999999999888876
No 194
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=95.90 E-value=0.077 Score=46.75 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=61.8
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhC-----CCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAG-----GHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVIL 82 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~-----g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vil 82 (269)
..+.|+.+||.|..-..-..++..|.+- .-.++.+|..--..-+....--..+.+.++....++++. +.++++|
T Consensus 121 ~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~~-G~~nI~L 199 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLPEVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVESE-GNKNIIL 199 (374)
T ss_pred CCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcCCCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhcc-CCCeEEE
Confidence 3689999999986665544444444221 236677776422100000001135666677777777555 4589999
Q ss_pred EEeChhhHHHHHHhhh--CCcc---cceeEEEeccCC
Q 024316 83 VGHSLGGVTLALAADK--FPHK---ISVAVFVTAFMP 114 (269)
Q Consensus 83 VGHSmGG~i~~~~a~~--~p~~---v~~lvli~~~~~ 114 (269)
+|-|.||-.+..+... .+++ =+++|+|+|.+.
T Consensus 200 mGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~ 236 (374)
T PF10340_consen 200 MGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVN 236 (374)
T ss_pred EecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcC
Confidence 9999999965544322 1111 247888887654
No 195
>PLN02310 triacylglycerol lipase
Probab=95.83 E-value=0.012 Score=52.15 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhCC---CCCcEEEEEeChhhHHHHHHhh
Q 024316 63 YSEPLMEVLASLP---AEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 63 ~~~~l~~~i~~l~---~~~~vilVGHSmGG~i~~~~a~ 97 (269)
..++|.++++... ...++++.||||||+++..+|.
T Consensus 191 Vl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~ 228 (405)
T PLN02310 191 VMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAY 228 (405)
T ss_pred HHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHH
Confidence 3445555555431 1237999999999998888763
No 196
>PLN02324 triacylglycerol lipase
Probab=95.79 E-value=0.014 Score=51.89 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCC-CCcEEEEEeChhhHHHHHHhh
Q 024316 64 SEPLMEVLASLPA-EEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 64 ~~~l~~~i~~l~~-~~~vilVGHSmGG~i~~~~a~ 97 (269)
.++|.++++..+. ..++++.||||||+++..+|.
T Consensus 200 l~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 200 QGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 3455556665532 136999999999998888763
No 197
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=95.73 E-value=0.02 Score=49.99 Aligned_cols=49 Identities=31% Similarity=0.380 Sum_probs=32.0
Q ss_pred HHHHHHHhC-CCCCcEEEEEeChhhHHHHHHhhhCC-----cccceeEEEeccCC
Q 024316 66 PLMEVLASL-PAEEKVILVGHSLGGVTLALAADKFP-----HKISVAVFVTAFMP 114 (269)
Q Consensus 66 ~l~~~i~~l-~~~~~vilVGHSmGG~i~~~~a~~~p-----~~v~~lvli~~~~~ 114 (269)
.|++.|... -+.+|++|||||||+-++..+...-. ..|..++++.++.+
T Consensus 207 ~LA~~L~~~~~G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~ 261 (345)
T PF05277_consen 207 VLADALLSRNQGERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVP 261 (345)
T ss_pred HHHHHHHHhcCCCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCC
Confidence 344444432 13468999999999997776543322 34788889986544
No 198
>PLN02802 triacylglycerol lipase
Probab=95.54 E-value=0.019 Score=52.13 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhCCC-CCcEEEEEeChhhHHHHHHhh
Q 024316 63 YSEPLMEVLASLPA-EEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 63 ~~~~l~~~i~~l~~-~~~vilVGHSmGG~i~~~~a~ 97 (269)
..++|.++++..++ ..++++.||||||+++..+|.
T Consensus 314 Vl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~ 349 (509)
T PLN02802 314 VVGEVRRLMEKYKGEELSITVTGHSLGAALALLVAD 349 (509)
T ss_pred HHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHH
Confidence 34455555655422 136899999999998887764
No 199
>PLN03037 lipase class 3 family protein; Provisional
Probab=95.50 E-value=0.019 Score=52.28 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhCC---CCCcEEEEEeChhhHHHHHHhh
Q 024316 63 YSEPLMEVLASLP---AEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 63 ~~~~l~~~i~~l~---~~~~vilVGHSmGG~i~~~~a~ 97 (269)
..++|..+++... ...++++.||||||++|..+|.
T Consensus 300 Vl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~ 337 (525)
T PLN03037 300 VMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAY 337 (525)
T ss_pred HHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHH
Confidence 3456666665542 1236999999999998887763
No 200
>PLN02753 triacylglycerol lipase
Probab=95.47 E-value=0.02 Score=52.16 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCC----CCcEEEEEeChhhHHHHHHhh
Q 024316 64 SEPLMEVLASLPA----EEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 64 ~~~l~~~i~~l~~----~~~vilVGHSmGG~i~~~~a~ 97 (269)
...|..+++..+. ..++++.||||||++|..+|.
T Consensus 294 l~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 294 LTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred HHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHH
Confidence 3445555554421 248999999999998888763
No 201
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=95.35 E-value=0.037 Score=44.68 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=31.8
Q ss_pred chHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhC
Q 024316 59 TFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKF 99 (269)
Q Consensus 59 ~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~ 99 (269)
.+.|..+....+|+...+++++||+|||-|+.++..+...+
T Consensus 76 ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 76 AYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 45566667777788775667999999999999888876543
No 202
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=95.33 E-value=0.054 Score=47.70 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC---CCCcEEEEEeChhhHHHHHHhhhCCcc
Q 024316 26 YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP---AEEKVILVGHSLGGVTLALAADKFPHK 102 (269)
Q Consensus 26 ~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~---~~~~vilVGHSmGG~i~~~~a~~~p~~ 102 (269)
+++.+.|+++|+.|+.+|-.-+=.|++ |-+..++|+..+|+... +..+++|||.|.|+=+.-.+..+-|..
T Consensus 277 k~v~~~l~~~gvpVvGvdsLRYfW~~r------tPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGADvlP~~~n~L~~~ 350 (456)
T COG3946 277 KEVAEALQKQGVPVVGVDSLRYFWSER------TPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGADVLPFAYNRLPPA 350 (456)
T ss_pred HHHHHHHHHCCCceeeeehhhhhhccC------CHHHHHHHHHHHHHHHHHhhCcceEEEEeecccchhhHHHHHhCCHH
Confidence 458889999999999999665444443 55777788888877542 346899999999999776665454533
No 203
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.07 E-value=0.091 Score=46.44 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=63.4
Q ss_pred CceEEEecCCCCCcc-------chHHHHHHHHhCCCeEEEeCCCCCCCCCcccc-------------cccchHHhHHHHH
Q 024316 9 EKHFVLVHGVNHGAW-------CWYKLKARLVAGGHRVTAVDLAASGINMKRIE-------------DVHTFHAYSEPLM 68 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-------~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-------------~~~~~~~~~~~l~ 68 (269)
+.||+|--|.=.+-+ +-..+++.|.+. +|-...|=+|+|-.-.. ....++|||.-|.
T Consensus 80 ~gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~~Al---lVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~ 156 (492)
T KOG2183|consen 80 EGPIFFYTGNEGDIEWFANNTGFMWDLAPELKAL---LVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLT 156 (492)
T ss_pred CCceEEEeCCcccHHHHHhccchHHhhhHhhCce---EEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHH
Confidence 479999988643332 223467777553 77888888888742211 1113445554444
Q ss_pred HHHHhCC-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 69 EVLASLP-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 69 ~~i~~l~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
.+=+.++ ...+||.+|-|+||+.++.+=.++|.-|.+...-++
T Consensus 157 ~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSA 200 (492)
T KOG2183|consen 157 FLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASA 200 (492)
T ss_pred HHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccC
Confidence 4333332 235899999999999877776799998887654443
No 204
>PLN02847 triacylglycerol lipase
Probab=95.06 E-value=0.034 Score=51.44 Aligned_cols=21 Identities=52% Similarity=0.670 Sum_probs=17.6
Q ss_pred CCcEEEEEeChhhHHHHHHhh
Q 024316 77 EEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~ 97 (269)
+-+++++||||||.++..++.
T Consensus 250 dYkLVITGHSLGGGVAALLAi 270 (633)
T PLN02847 250 DFKIKIVGHSLGGGTAALLTY 270 (633)
T ss_pred CCeEEEeccChHHHHHHHHHH
Confidence 358999999999998887754
No 205
>PLN02719 triacylglycerol lipase
Probab=94.98 E-value=0.035 Score=50.57 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=16.8
Q ss_pred cEEEEEeChhhHHHHHHhh
Q 024316 79 KVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~ 97 (269)
++++.||||||+++..+|.
T Consensus 299 sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 299 SITVTGHSLGGALAVLSAY 317 (518)
T ss_pred eEEEecCcHHHHHHHHHHH
Confidence 7999999999998888763
No 206
>PLN02761 lipase class 3 family protein
Probab=94.97 E-value=0.036 Score=50.58 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=16.3
Q ss_pred cEEEEEeChhhHHHHHHh
Q 024316 79 KVILVGHSLGGVTLALAA 96 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a 96 (269)
++++.||||||+++..+|
T Consensus 295 sItVTGHSLGGALAtLaA 312 (527)
T PLN02761 295 SITVTGHSLGASLALVSA 312 (527)
T ss_pred eEEEeccchHHHHHHHHH
Confidence 699999999999888776
No 207
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=94.89 E-value=0.056 Score=49.45 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=46.4
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCC-----------------------------------CCeEEEEcCCCCCCCCC
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYP-----------------------------------VNEVMEIKGGDHMAMLS 252 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~-----------------------------------~~~~~~i~~~gH~~~~e 252 (269)
.+++++..|..|-+++....++.++.+. +..+..+.++||+++.+
T Consensus 364 gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~d 443 (462)
T PTZ00472 364 GVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPMD 443 (462)
T ss_pred CceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChhh
Confidence 4789999999999998877666544221 12344567899999999
Q ss_pred CcHHHHHHHHHHHH
Q 024316 253 DPQKLCDCLSQISL 266 (269)
Q Consensus 253 ~p~~~~~~l~~f~~ 266 (269)
+|+++.+.|.+|+.
T Consensus 444 ~P~~~~~~i~~fl~ 457 (462)
T PTZ00472 444 QPAVALTMINRFLR 457 (462)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999985
No 208
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=94.36 E-value=0.13 Score=40.65 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=50.3
Q ss_pred eEEEecCCCCCccc---hHHHHHHHHh-CC---CeEEEeCCCCCCCCCcccccccch----HHhHHHHHHHHHhCCCCCc
Q 024316 11 HFVLVHGVNHGAWC---WYKLKARLVA-GG---HRVTAVDLAASGINMKRIEDVHTF----HAYSEPLMEVLASLPAEEK 79 (269)
Q Consensus 11 ~ivlvHG~~~~~~~---w~~~~~~L~~-~g---~~Via~Dl~G~G~S~~~~~~~~~~----~~~~~~l~~~i~~l~~~~~ 79 (269)
-|++..|.+..... =..+...|++ .| ..+..++.|--.... .-..+. .+..+.+.+....- ...+
T Consensus 7 ~vi~aRGT~E~~g~~~~g~~~~~~l~~~~g~~~~~~~~V~YpA~~~~~---~y~~S~~~G~~~~~~~i~~~~~~C-P~~k 82 (179)
T PF01083_consen 7 HVIFARGTGEPPGVGRVGPPFADALQAQPGGTSVAVQGVEYPASLGPN---SYGDSVAAGVANLVRLIEEYAARC-PNTK 82 (179)
T ss_dssp EEEEE--TTSSTTTCCCHHHHHHHHHHHCTTCEEEEEE--S---SCGG---SCHHHHHHHHHHHHHHHHHHHHHS-TTSE
T ss_pred EEEEecCCCCCCCCccccHHHHHHHHhhcCCCeeEEEecCCCCCCCcc---cccccHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 57777888776542 1223334432 22 345556666422110 001122 33334444444444 3478
Q ss_pred EEEEEeChhhHHHHHHhhh------CCcccceeEEEec
Q 024316 80 VILVGHSLGGVTLALAADK------FPHKISVAVFVTA 111 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~~------~p~~v~~lvli~~ 111 (269)
++|+|+|.|+.++..++.. ..++|.++|++.-
T Consensus 83 ivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGd 120 (179)
T PF01083_consen 83 IVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGD 120 (179)
T ss_dssp EEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-
T ss_pred EEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecC
Confidence 9999999999988887655 2367889998874
No 209
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=94.31 E-value=0.14 Score=43.00 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=46.3
Q ss_pred ccEEEEEeCCCCCCChHHHHHHHHhCCC--CeEEEEcCCCCCCCCCCcH---HHHHHHHHHHHh
Q 024316 209 VKRVYLVCEEDIGLPKQFQHWMIQNYPV--NEVMEIKGGDHMAMLSDPQ---KLCDCLSQISLK 267 (269)
Q Consensus 209 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~e~p~---~~~~~l~~f~~~ 267 (269)
.|.++++|.+|..+|...+....+.... .+..++++++|......+. +-...+.+|+.+
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~ 296 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLER 296 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHH
Confidence 7999999999999999999887765544 4667788899999876555 455666777765
No 210
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=93.96 E-value=0.12 Score=45.76 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.8
Q ss_pred CcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 78 EKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 78 ~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
-|+|++|+|.||.++.++|.-.|-.|++++=-++.
T Consensus 184 lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~ 218 (403)
T PF11144_consen 184 LPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSY 218 (403)
T ss_pred CcEEEEecCcHHHHHHHHHhhCccceeEEEecCcc
Confidence 38999999999999999998899999999866554
No 211
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=93.87 E-value=0.088 Score=46.11 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhh
Q 024316 61 HAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~ 97 (269)
..+-+++..+++..+ .-++++-||||||++|+.+|.
T Consensus 155 ~~~~~~~~~L~~~~~-~~~i~vTGHSLGgAlA~laa~ 190 (336)
T KOG4569|consen 155 SGLDAELRRLIELYP-NYSIWVTGHSLGGALASLAAL 190 (336)
T ss_pred HHHHHHHHHHHHhcC-CcEEEEecCChHHHHHHHHHH
Confidence 466677777777774 468999999999998888764
No 212
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.1 Score=44.31 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=60.6
Q ss_pred ceEEEecCC--CCCccchHHHHHHHHhCCC----eEEEeCCCCCCCCCccc----ccccchHHhHHHHHHHHHhCC----
Q 024316 10 KHFVLVHGV--NHGAWCWYKLKARLVAGGH----RVTAVDLAASGINMKRI----EDVHTFHAYSEPLMEVLASLP---- 75 (269)
Q Consensus 10 ~~ivlvHG~--~~~~~~w~~~~~~L~~~g~----~Via~Dl~G~G~S~~~~----~~~~~~~~~~~~l~~~i~~l~---- 75 (269)
+.+++.||- ..+...|+.+-..+ +.|- -++.+|- ....++. .+...+..++++|+-.|++.-
T Consensus 99 pvl~~~DG~~~~~~g~i~~~~dsli-~~g~i~pai~vgid~---~d~~~R~~~~~~n~~~~~~L~~eLlP~v~~~yp~~~ 174 (299)
T COG2382 99 PVLYLQDGQDWFRSGRIPRILDSLI-AAGEIPPAILVGIDY---IDVKKRREELHCNEAYWRFLAQELLPYVEERYPTSA 174 (299)
T ss_pred cEEEEeccHHHHhcCChHHHHHHHH-HcCCCCCceEEecCC---CCHHHHHHHhcccHHHHHHHHHHhhhhhhccCcccc
Confidence 688999986 34445565555444 3343 3334432 1111111 112245566667777777541
Q ss_pred CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 76 AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 76 ~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
....-+|.|-||||.++.+++.++|+.|-.++..++
T Consensus 175 ~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sp 210 (299)
T COG2382 175 DADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSG 210 (299)
T ss_pred cCCCcEEeccccccHHHHHHHhcCchhhceeeccCC
Confidence 123588999999999999999999999987765554
No 213
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=93.06 E-value=0.3 Score=43.80 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=63.7
Q ss_pred CceEEEecCCCCCccchHHHHH----HHHh--------------CCCeEEEeCCC-CCCCCCccccc--ccchHHhHHHH
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKA----RLVA--------------GGHRVTAVDLA-ASGINMKRIED--VHTFHAYSEPL 67 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~----~L~~--------------~g~~Via~Dl~-G~G~S~~~~~~--~~~~~~~~~~l 67 (269)
.|.|+.+.|.+.++..|-.+.+ .+.. .-.+|+-+|.| |-|.|-..... ..+.++.++++
T Consensus 40 ~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~an~l~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~ 119 (415)
T PF00450_consen 40 DPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKFANLLFIDQPVGTGFSYGNDPSDYVWNDDQAAEDL 119 (415)
T ss_dssp S-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGTSEEEEE--STTSTT-EESSGGGGS-SHHHHHHHH
T ss_pred ccEEEEecCCceeccccccccccCceEEeecccccccccccccccccceEEEeecCceEEeeccccccccchhhHHHHHH
Confidence 5788999999888887755332 0110 12478889977 89988643322 23677788887
Q ss_pred HHHHHhC----C--CCCcEEEEEeChhhHHHHHHhh----hC------CcccceeEEEeccC
Q 024316 68 MEVLASL----P--AEEKVILVGHSLGGVTLALAAD----KF------PHKISVAVFVTAFM 113 (269)
Q Consensus 68 ~~~i~~l----~--~~~~vilVGHSmGG~i~~~~a~----~~------p~~v~~lvli~~~~ 113 (269)
.++|... + ...+..|.|.|+||..+..+|. +. +=.++++++.++..
T Consensus 120 ~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~ 181 (415)
T PF00450_consen 120 YEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWI 181 (415)
T ss_dssp HHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-S
T ss_pred HHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccc
Confidence 7777743 2 2348999999999995544432 22 23477998888754
No 214
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=1.4 Score=36.97 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=43.5
Q ss_pred EEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCC-CCCCcHHHHHHHHHHHH
Q 024316 211 RVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMA-MLSDPQKLCDCLSQISL 266 (269)
Q Consensus 211 ~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~f~~ 266 (269)
+.++..++|..+|.......-+..|+++++.++ .||.. ++-+-+.+-.+|.+-+.
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~ 364 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLD 364 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHH
Confidence 455789999999987777778888999999999 89964 55566778777776654
No 215
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=92.73 E-value=0.086 Score=33.99 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=10.9
Q ss_pred CCceEEEecCCCCCccch
Q 024316 8 EEKHFVLVHGVNHGAWCW 25 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w 25 (269)
..+||+|.||+..++..|
T Consensus 42 ~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 42 KKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp T--EEEEE--TT--GGGG
T ss_pred CCCcEEEECCcccChHHH
Confidence 367999999999999998
No 216
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=0.17 Score=46.83 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=24.5
Q ss_pred chHHhHHHHHHHHHhC--CCCCcEEEEEeChhhHHH
Q 024316 59 TFHAYSEPLMEVLASL--PAEEKVILVGHSLGGVTL 92 (269)
Q Consensus 59 ~~~~~~~~l~~~i~~l--~~~~~vilVGHSmGG~i~ 92 (269)
+++.-++.+.+.+.+. +.+.+++.|||||||..+
T Consensus 505 sl~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~ 540 (697)
T KOG2029|consen 505 SLAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLA 540 (697)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEecccchHHH
Confidence 5555566666666654 335689999999999844
No 217
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=92.07 E-value=0.26 Score=44.16 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=43.8
Q ss_pred ccEEEEEeCCCCCCChHHHHHHHHhCC--------------------------CCeEEEEcCCCCCCCCCCcHHHHHHHH
Q 024316 209 VKRVYLVCEEDIGLPKQFQHWMIQNYP--------------------------VNEVMEIKGGDHMAMLSDPQKLCDCLS 262 (269)
Q Consensus 209 ~P~l~i~g~~D~~~~~~~~~~~~~~~~--------------------------~~~~~~i~~~gH~~~~e~p~~~~~~l~ 262 (269)
+++|+..|..|-++|.-..+..++++. +..+.++.++||+++.++|++..+.|.
T Consensus 331 irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~~ 410 (415)
T PF00450_consen 331 IRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMFR 410 (415)
T ss_dssp -EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHH
T ss_pred ceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHHH
Confidence 889999999999999988888776531 112567889999999999999999999
Q ss_pred HHHH
Q 024316 263 QISL 266 (269)
Q Consensus 263 ~f~~ 266 (269)
+|++
T Consensus 411 ~fl~ 414 (415)
T PF00450_consen 411 RFLK 414 (415)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9974
No 218
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=91.51 E-value=2.1 Score=38.98 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=68.8
Q ss_pred CceEEEecCCCCCcc--------chHHHHHHHHhCCCeEEEeCCCCCCCCCcccc-c-----ccchHHhHHHHHHHHHhC
Q 024316 9 EKHFVLVHGVNHGAW--------CWYKLKARLVAGGHRVTAVDLAASGINMKRIE-D-----VHTFHAYSEPLMEVLASL 74 (269)
Q Consensus 9 g~~ivlvHG~~~~~~--------~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-~-----~~~~~~~~~~l~~~i~~l 74 (269)
||..++|-|=+.-.. .|-.+++.+ |=.|+-+.+|=+|.|....+ . ..|......||+++|+++
T Consensus 86 gPiFLmIGGEgp~~~~wv~~~~~~~~~~Akkf---gA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~ 162 (514)
T KOG2182|consen 86 GPIFLMIGGEGPESDKWVGNENLTWLQWAKKF---GATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAM 162 (514)
T ss_pred CceEEEEcCCCCCCCCccccCcchHHHHHHHh---CCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHH
Confidence 455555555444332 244444444 45799999999997742211 1 125566677888888876
Q ss_pred C------CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEeccC
Q 024316 75 P------AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 75 ~------~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
. ...|.|..|-|+-|.+++.+=+++|+.+.+-|..++++
T Consensus 163 n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 163 NAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 2 12389999999999977777779999999998777643
No 219
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=90.29 E-value=0.54 Score=39.73 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC
Q 024316 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 66 ~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p 100 (269)
|+...+..+-.+.++.|-|||+||++++.+-.++.
T Consensus 264 dI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 264 DILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHHHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 33333444434578999999999999988765553
No 220
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=90.29 E-value=0.54 Score=39.73 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC
Q 024316 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 66 ~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p 100 (269)
|+...+..+-.+.++.|-|||+||++++.+-.++.
T Consensus 264 dI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T COG5153 264 DILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHHHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 33333444434578999999999999988765553
No 221
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=90.27 E-value=1.3 Score=36.42 Aligned_cols=76 Identities=18% Similarity=0.077 Sum_probs=45.3
Q ss_pred CCeEEEeCCCC-CCC-CCc-ccccccchHHhHHHHHHHHHhC-CCCCcEEEEEeChhhHHHHHHhhhC---C--c-ccce
Q 024316 36 GHRVTAVDLAA-SGI-NMK-RIEDVHTFHAYSEPLMEVLASL-PAEEKVILVGHSLGGVTLALAADKF---P--H-KISV 105 (269)
Q Consensus 36 g~~Via~Dl~G-~G~-S~~-~~~~~~~~~~~~~~l~~~i~~l-~~~~~vilVGHSmGG~i~~~~a~~~---p--~-~v~~ 105 (269)
|+++..++.|. ++- +.. ...-..++++=++.|.+.|++. ...++++++|+|.|+.++..++.+. + . ....
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~ 81 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLS 81 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceE
Confidence 56777777775 221 110 0111236666667777777762 1347899999999999888776432 1 1 2335
Q ss_pred eEEEec
Q 024316 106 AVFVTA 111 (269)
Q Consensus 106 lvli~~ 111 (269)
.|+++-
T Consensus 82 fVl~gn 87 (225)
T PF08237_consen 82 FVLIGN 87 (225)
T ss_pred EEEecC
Confidence 666653
No 222
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=90.25 E-value=0.93 Score=42.38 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=55.7
Q ss_pred CceEEEecCCCC---CccchHHHHHHHHhCCCeEE--EeCCC----CCCCCC-cccccccchHHhHH---HHHHHHHhCC
Q 024316 9 EKHFVLVHGVNH---GAWCWYKLKARLVAGGHRVT--AVDLA----ASGINM-KRIEDVHTFHAYSE---PLMEVLASLP 75 (269)
Q Consensus 9 g~~ivlvHG~~~---~~~~w~~~~~~L~~~g~~Vi--a~Dl~----G~G~S~-~~~~~~~~~~~~~~---~l~~~i~~l~ 75 (269)
-+.+|+|||.+. ++..+.............|| ++..| |+.-.. .....++.+.|... -+.+-|...+
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 468999999852 22223222221111112344 44444 332221 11123455555544 3455566664
Q ss_pred CC-CcEEEEEeChhhHHHHHHhh--hCCcccceeEEEecc
Q 024316 76 AE-EKVILVGHSLGGVTLALAAD--KFPHKISVAVFVTAF 112 (269)
Q Consensus 76 ~~-~~vilVGHSmGG~i~~~~a~--~~p~~v~~lvli~~~ 112 (269)
++ ++|+|.|||-||.++..... +...++.+.|.+++.
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 43 47999999999997766542 223567777777754
No 223
>PLN02209 serine carboxypeptidase
Probab=90.25 E-value=1.6 Score=39.79 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=45.2
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCC------------------------C-CeEEEEcCCCCCCCCCCcHHHHHHHH
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYP------------------------V-NEVMEIKGGDHMAMLSDPQKLCDCLS 262 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~------------------------~-~~~~~i~~~gH~~~~e~p~~~~~~l~ 262 (269)
.+++++..|..|-++|.-..++.++.+. + .+..++-++||+.+ .+|++..+.+.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 4789999999999999887776654321 1 23445677999997 59999999999
Q ss_pred HHHH
Q 024316 263 QISL 266 (269)
Q Consensus 263 ~f~~ 266 (269)
+|+.
T Consensus 430 ~fi~ 433 (437)
T PLN02209 430 RWIS 433 (437)
T ss_pred HHHc
Confidence 9985
No 224
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=89.47 E-value=1.5 Score=44.21 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=63.4
Q ss_pred CCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCC-CcccccccchHHhHHHHHHHHHhCCCCCcEEEEEe
Q 024316 7 MEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGIN-MKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGH 85 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S-~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGH 85 (269)
+.++|+.|||-.-........++..| ..|.+|.. .... ...++++.+.--+..|+++-...|-.|+|.
T Consensus 2121 se~~~~Ffv~pIEG~tt~l~~la~rl----------e~PaYglQ~T~~v-P~dSies~A~~yirqirkvQP~GPYrl~GY 2189 (2376)
T KOG1202|consen 2121 SEEPPLFFVHPIEGFTTALESLASRL----------EIPAYGLQCTEAV-PLDSIESLAAYYIRQIRKVQPEGPYRLAGY 2189 (2376)
T ss_pred ccCCceEEEeccccchHHHHHHHhhc----------CCcchhhhccccC-CcchHHHHHHHHHHHHHhcCCCCCeeeecc
Confidence 34899999997754444444444433 34555642 2222 234889999998888988744569999999
Q ss_pred ChhhHHHHHHhhhC--CcccceeEEEec
Q 024316 86 SLGGVTLALAADKF--PHKISVAVFVTA 111 (269)
Q Consensus 86 SmGG~i~~~~a~~~--p~~v~~lvli~~ 111 (269)
|+|..++..+|..- .+-...++++++
T Consensus 2190 SyG~~l~f~ma~~Lqe~~~~~~lillDG 2217 (2376)
T KOG1202|consen 2190 SYGACLAFEMASQLQEQQSPAPLILLDG 2217 (2376)
T ss_pred chhHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 99999887776432 233456888885
No 225
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=89.15 E-value=6.3 Score=36.94 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=67.1
Q ss_pred CceEEEecCCCCCcc--chHH-HHHHHHhCCCeEEEeCCCCCCCCCc-------ccccccchHHhHHHHHHHHHhC-CCC
Q 024316 9 EKHFVLVHGVNHGAW--CWYK-LKARLVAGGHRVTAVDLAASGINMK-------RIEDVHTFHAYSEPLMEVLASL-PAE 77 (269)
Q Consensus 9 g~~ivlvHG~~~~~~--~w~~-~~~~L~~~g~~Via~Dl~G~G~S~~-------~~~~~~~~~~~~~~l~~~i~~l-~~~ 77 (269)
.+++|.-=|.+.-+. .|.. ...+| ++|.--+..++||-|+=.. ......-++|+++.+.++++.- ..-
T Consensus 421 ~pTll~aYGGF~vsltP~fs~~~~~WL-erGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitsp 499 (648)
T COG1505 421 NPTLLYAYGGFNISLTPRFSGSRKLWL-ERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSP 499 (648)
T ss_pred CceEEEeccccccccCCccchhhHHHH-hcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCH
Confidence 456666655544333 2433 35566 5577777889999775431 1112347788888888888752 011
Q ss_pred CcEEEEEeChhhHHHHHHhhhCCcccceeEEE
Q 024316 78 EKVILVGHSLGGVTLALAADKFPHKISVAVFV 109 (269)
Q Consensus 78 ~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli 109 (269)
+++-+-|-|=||+++..+..++|+.+.++|+-
T Consensus 500 e~lgi~GgSNGGLLvg~alTQrPelfgA~v~e 531 (648)
T COG1505 500 EKLGIQGGSNGGLLVGAALTQRPELFGAAVCE 531 (648)
T ss_pred HHhhhccCCCCceEEEeeeccChhhhCceeec
Confidence 46889999999998888888999999887633
No 226
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=88.29 E-value=1.7 Score=37.73 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=44.7
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCC------------------------C-CeEEEEcCCCCCCCCCCcHHHHHHHH
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYP------------------------V-NEVMEIKGGDHMAMLSDPQKLCDCLS 262 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~------------------------~-~~~~~i~~~gH~~~~e~p~~~~~~l~ 262 (269)
.+++|+-.|..|-++|.-..++.++.+. + .++.++-++||+.+ .+|++..+.+.
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~ 311 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 311 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHH
Confidence 4789999999999998877776655331 1 23445568999997 59999999999
Q ss_pred HHHH
Q 024316 263 QISL 266 (269)
Q Consensus 263 ~f~~ 266 (269)
+|+.
T Consensus 312 ~fi~ 315 (319)
T PLN02213 312 RWIS 315 (319)
T ss_pred HHHc
Confidence 9985
No 227
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=87.27 E-value=1.4 Score=39.98 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=45.5
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCC------------------------C-CeEEEEcCCCCCCCCCCcHHHHHHHH
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYP------------------------V-NEVMEIKGGDHMAMLSDPQKLCDCLS 262 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~------------------------~-~~~~~i~~~gH~~~~e~p~~~~~~l~ 262 (269)
.+++|+-.|..|-++|.-..++.++.+. + .+..++-++||+.+ .+|++..+.+.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 4789999999999999888777665331 0 22445667999997 59999999999
Q ss_pred HHHH
Q 024316 263 QISL 266 (269)
Q Consensus 263 ~f~~ 266 (269)
+|+.
T Consensus 426 ~Fi~ 429 (433)
T PLN03016 426 RWIS 429 (433)
T ss_pred HHHc
Confidence 9985
No 228
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=85.82 E-value=4.1 Score=32.86 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=46.3
Q ss_pred HHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh----hhHHHHHHhhhCC-cccc
Q 024316 31 RLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL----GGVTLALAADKFP-HKIS 104 (269)
Q Consensus 31 ~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm----GG~i~~~~a~~~p-~~v~ 104 (269)
.+...|. +|+..|.++. ..|+.+.|++.+.+++++.+ ..++|+|||- |..++..+|.+.. ..+.
T Consensus 71 ~l~~~G~d~V~~~~~~~~--------~~~~~e~~a~al~~~i~~~~--p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 71 EALAMGADRAILVSDRAF--------AGADTLATAKALAAAIKKIG--VDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHcCCCEEEEEecccc--------cCCChHHHHHHHHHHHHHhC--CCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 3334454 7888876543 23577899999999998763 5799999999 6668888776543 2344
Q ss_pred eeE
Q 024316 105 VAV 107 (269)
Q Consensus 105 ~lv 107 (269)
..+
T Consensus 141 dv~ 143 (202)
T cd01714 141 YVS 143 (202)
T ss_pred eEE
Confidence 443
No 229
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=85.76 E-value=6.6 Score=27.82 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=55.5
Q ss_pred CCccc-hHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH--HHHHHh
Q 024316 20 HGAWC-WYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV--TLALAA 96 (269)
Q Consensus 20 ~~~~~-w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~--i~~~~a 96 (269)
.|.|. |..+.+.|...||.-=.+.|+..|.+-...-....-+.=...+..+++..+ ..+.+|||=|=-.= +-..+|
T Consensus 7 ~SPwnly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP-~~kfiLIGDsgq~DpeiY~~ia 85 (100)
T PF09949_consen 7 NSPWNLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFP-ERKFILIGDSGQHDPEIYAEIA 85 (100)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCC-CCcEEEEeeCCCcCHHHHHHHH
Confidence 34553 566777777778877777787776553221011111344557777788784 47999999885443 344557
Q ss_pred hhCCcccceeE
Q 024316 97 DKFPHKISVAV 107 (269)
Q Consensus 97 ~~~p~~v~~lv 107 (269)
.++|++|.++.
T Consensus 86 ~~~P~~i~ai~ 96 (100)
T PF09949_consen 86 RRFPGRILAIY 96 (100)
T ss_pred HHCCCCEEEEE
Confidence 89999998764
No 230
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=85.33 E-value=3.5 Score=38.95 Aligned_cols=102 Identities=14% Similarity=0.206 Sum_probs=66.9
Q ss_pred CceEEEecCCCCCc-c-chHHHHHHHHhCCCeEEEe-CCCCCCCCCc-------ccccccchHHhHHHHHHHHHhC-CCC
Q 024316 9 EKHFVLVHGVNHGA-W-CWYKLKARLVAGGHRVTAV-DLAASGINMK-------RIEDVHTFHAYSEPLMEVLASL-PAE 77 (269)
Q Consensus 9 g~~ivlvHG~~~~~-~-~w~~~~~~L~~~g~~Via~-Dl~G~G~S~~-------~~~~~~~~~~~~~~l~~~i~~l-~~~ 77 (269)
.|.++..=|.-..+ . .+....-.|..+|+ |+|+ --||-|.=.+ ......|+.|+.+....+++.- ..-
T Consensus 448 ~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGf-iyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~ 526 (682)
T COG1770 448 APLLLYGYGAYGISMDPSFSIARLSLLDRGF-VYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSP 526 (682)
T ss_pred CcEEEEEeccccccCCcCcccceeeeecCce-EEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCc
Confidence 56666666653222 1 24444444556664 4555 4567655432 2222348999998888888753 122
Q ss_pred CcEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 78 EKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 78 ~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
+.+++.|-|.||+++...+...|++++++|.--|
T Consensus 527 ~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VP 560 (682)
T COG1770 527 DRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVP 560 (682)
T ss_pred cceEEeccCchhHHHHHHHhhChhhhhheeecCC
Confidence 4799999999999888888899999999986544
No 231
>PRK12467 peptide synthase; Provisional
Probab=84.27 E-value=7.3 Score=45.45 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=70.4
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhh
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGG 89 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG 89 (269)
+.+++.|...-+...+..+...|.. +..|+++..++.-.... ...++++.+..-.+.+...-...+..+.|+|+||
T Consensus 3693 ~~l~~~h~~~r~~~~~~~l~~~l~~-~~~~~~l~~~~~~~d~~---~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~ 3768 (3956)
T PRK12467 3693 PALFCRHEGLGTVFDYEPLAVILEG-DRHVLGLTCRHLLDDGW---QDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGG 3768 (3956)
T ss_pred cceeeechhhcchhhhHHHHHHhCC-CCcEEEEeccccccccC---CccchHHHHHHHHHHHHHhccCCCeeeeeeecch
Confidence 4599999988788888888888854 57899988876533322 1236777777777777654233589999999999
Q ss_pred HHHHHHhh---hCCcccceeEEEeccCC
Q 024316 90 VTLALAAD---KFPHKISVAVFVTAFMP 114 (269)
Q Consensus 90 ~i~~~~a~---~~p~~v~~lvli~~~~~ 114 (269)
.++..++. +..+.+.-+.+++...|
T Consensus 3769 ~~a~~~~~~l~~~g~~~~~~~~~~~~~~ 3796 (3956)
T PRK12467 3769 TLARLVAELLEREGESEAFLGLFDNTLP 3796 (3956)
T ss_pred HHHHHHHHHHHHcCCceeEEEEEecccc
Confidence 98776653 34566766666655444
No 232
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.13 E-value=0.56 Score=36.60 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.9
Q ss_pred CcEEEEEeChhhHHHHHHhhhCCcccceeEEEecc
Q 024316 78 EKVILVGHSLGGVTLALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 78 ~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~~ 112 (269)
...++-|.||||.-++.+.-++|+.+.++|.+++.
T Consensus 101 gs~~~sgcsmGayhA~nfvfrhP~lftkvialSGv 135 (227)
T COG4947 101 GSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGV 135 (227)
T ss_pred CCccccccchhhhhhhhhheeChhHhhhheeecce
Confidence 46889999999998888888999999999988764
No 233
>PLN02209 serine carboxypeptidase
Probab=83.79 E-value=3.9 Score=37.24 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=59.2
Q ss_pred CceEEEecCCCCCccchHHHHH---H-------------HHhC------CCeEEEeCCC-CCCCCCcccc-cccchHHhH
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKA---R-------------LVAG------GHRVTAVDLA-ASGINMKRIE-DVHTFHAYS 64 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~---~-------------L~~~------g~~Via~Dl~-G~G~S~~~~~-~~~~~~~~~ 64 (269)
.|.|+.+-|.+.++..+..+.+ . |... -.+++-+|.| |.|.|-...+ ...+-++.+
T Consensus 68 ~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~~~~~~~a 147 (437)
T PLN02209 68 DPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPVGSGFSYSKTPIERTSDTSEV 147 (437)
T ss_pred CCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEEEecCCCCCCccCCCCCCCccCCHHHH
Confidence 4788899999777766644321 0 1000 1478888977 8888742211 111223334
Q ss_pred HHHHHHHH----hCCC--CCcEEEEEeChhhHHHHHHhhh----C------CcccceeEEEeccC
Q 024316 65 EPLMEVLA----SLPA--EEKVILVGHSLGGVTLALAADK----F------PHKISVAVFVTAFM 113 (269)
Q Consensus 65 ~~l~~~i~----~l~~--~~~vilVGHSmGG~i~~~~a~~----~------p~~v~~lvli~~~~ 113 (269)
+++.+++. ..+. ..+..|.|.|+||..+-.+|.. + +=.++++++.++..
T Consensus 148 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~t 212 (437)
T PLN02209 148 KKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPIT 212 (437)
T ss_pred HHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCccc
Confidence 55555444 3332 2489999999999844333321 1 11456777777643
No 234
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=82.64 E-value=3.7 Score=37.42 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=45.5
Q ss_pred ccEEEEEeCCCCCCChHHHHHHHHhC---------C----C------------CeEEEEcCCCCCCCCCCcHHHHHHHHH
Q 024316 209 VKRVYLVCEEDIGLPKQFQHWMIQNY---------P----V------------NEVMEIKGGDHMAMLSDPQKLCDCLSQ 263 (269)
Q Consensus 209 ~P~l~i~g~~D~~~~~~~~~~~~~~~---------~----~------------~~~~~i~~~gH~~~~e~p~~~~~~l~~ 263 (269)
+++++..|+.|.++|.-..++.++.+ | . ....++-|+||+.+.++|++-...+.+
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 67899999999999988877754322 1 1 112566799999999999999999999
Q ss_pred HHH
Q 024316 264 ISL 266 (269)
Q Consensus 264 f~~ 266 (269)
|+.
T Consensus 444 fl~ 446 (454)
T KOG1282|consen 444 FLN 446 (454)
T ss_pred HHc
Confidence 985
No 235
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=82.21 E-value=5.3 Score=36.36 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=58.3
Q ss_pred CceEEEecCCCCCccch---HHHHHH-------------HHh------CCCeEEEeCCC-CCCCCCccccccc-----ch
Q 024316 9 EKHFVLVHGVNHGAWCW---YKLKAR-------------LVA------GGHRVTAVDLA-ASGINMKRIEDVH-----TF 60 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w---~~~~~~-------------L~~------~g~~Via~Dl~-G~G~S~~~~~~~~-----~~ 60 (269)
.|.|+.+-|.+..+..+ .++-+. |.. .-.+++-+|.| |.|.|-......+ +.
T Consensus 66 ~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~~~d~~~a 145 (433)
T PLN03016 66 DPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANIIFLDQPVGSGFSYSKTPIDKTGDISEV 145 (433)
T ss_pred CCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcEEEecCCCCCCccCCCCCCCccCCHHHH
Confidence 57888899986666533 222221 100 01478899977 8998853221111 22
Q ss_pred HHhHHHHHHHHHhCC--CCCcEEEEEeChhhHHHHHHhhh----C------CcccceeEEEecc
Q 024316 61 HAYSEPLMEVLASLP--AEEKVILVGHSLGGVTLALAADK----F------PHKISVAVFVTAF 112 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~--~~~~vilVGHSmGG~i~~~~a~~----~------p~~v~~lvli~~~ 112 (269)
+++...|..+++..+ ...+..|.|.|+||..+-.+|.. + +=.++++++-++.
T Consensus 146 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~ 209 (433)
T PLN03016 146 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPV 209 (433)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCC
Confidence 234444445544443 23579999999999844444432 2 1146677776654
No 236
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=82.16 E-value=1.9 Score=40.49 Aligned_cols=103 Identities=11% Similarity=0.127 Sum_probs=64.8
Q ss_pred CceEEEecCCCCCc-c-chHHHHHHHHhCCCeEEEeCCCCCCCCC-------cccccccchHHhHHHHHHHHHhCC-CCC
Q 024316 9 EKHFVLVHGVNHGA-W-CWYKLKARLVAGGHRVTAVDLAASGINM-------KRIEDVHTFHAYSEPLMEVLASLP-AEE 78 (269)
Q Consensus 9 g~~ivlvHG~~~~~-~-~w~~~~~~L~~~g~~Via~Dl~G~G~S~-------~~~~~~~~~~~~~~~l~~~i~~l~-~~~ 78 (269)
.|.++..||...-+ . .|+.--.-|...|+-..-.|.||-|.=+ +......+++|+..-..-+++.-- .-.
T Consensus 470 ~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~ 549 (712)
T KOG2237|consen 470 KPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPS 549 (712)
T ss_pred CceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCcc
Confidence 35555566653222 1 3543222334556544445999977543 222223488888887777777421 225
Q ss_pred cEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 79 KVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
+..+.|-|-||+++..+..++|+++.++|+=-+
T Consensus 550 kL~i~G~SaGGlLvga~iN~rPdLF~avia~Vp 582 (712)
T KOG2237|consen 550 KLAIEGGSAGGLLVGACINQRPDLFGAVIAKVP 582 (712)
T ss_pred ceeEecccCccchhHHHhccCchHhhhhhhcCc
Confidence 799999999999877778899999988775433
No 237
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=81.63 E-value=2.6 Score=38.57 Aligned_cols=106 Identities=10% Similarity=0.100 Sum_probs=61.1
Q ss_pred CceEEEecCCCCCccchHHHHHH----HHh--------------CCCeEEEeCCC-CCCCCCcccc-ccc-------chH
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKAR----LVA--------------GGHRVTAVDLA-ASGINMKRIE-DVH-------TFH 61 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~----L~~--------------~g~~Via~Dl~-G~G~S~~~~~-~~~-------~~~ 61 (269)
.|.|+.+.|.+..+..|-.+.+- +.. ..=+++-+|+| |-|.|....+ ... ++.
T Consensus 101 rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~~ 180 (498)
T COG2939 101 RPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDVY 180 (498)
T ss_pred CceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCcccccccccccchhccchhHH
Confidence 57889999999888888776430 000 00167888966 8888763111 111 222
Q ss_pred HhHHHHHHHHHhCC-CCCcEEEEEeChhhHHHHHHhhhCCc---ccceeEEEeccCC
Q 024316 62 AYSEPLMEVLASLP-AEEKVILVGHSLGGVTLALAADKFPH---KISVAVFVTAFMP 114 (269)
Q Consensus 62 ~~~~~l~~~i~~l~-~~~~vilVGHSmGG~i~~~~a~~~p~---~v~~lvli~~~~~ 114 (269)
.+.+.+.+.+-+.. ...+-+|+|-|+||.-+...|...-+ -..++|++.+.+.
T Consensus 181 ~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvli 237 (498)
T COG2939 181 SFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLI 237 (498)
T ss_pred HHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeee
Confidence 33333333333332 23589999999999955444433223 3566777776544
No 238
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=80.24 E-value=11 Score=30.75 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=50.1
Q ss_pred CceEEEecCCCCCccchHH----HHHHHHhCCCeEEEeCCCC----CCCC--Cc------cc-----------------c
Q 024316 9 EKHFVLVHGVNHGAWCWYK----LKARLVAGGHRVTAVDLAA----SGIN--MK------RI-----------------E 55 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~----~~~~L~~~g~~Via~Dl~G----~G~S--~~------~~-----------------~ 55 (269)
.+-|+|+||+-.|...++. +-..|.+. +..+-+|-|- -+.+ .+ +. .
T Consensus 5 k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~~ 83 (230)
T KOG2551|consen 5 KLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASFT 83 (230)
T ss_pred CceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccccccc
Confidence 3589999999988876544 23333333 5677776662 0000 00 00 0
Q ss_pred cccchHHhHHHHHHHHHhCCCCCc-EEEEEeChhhHHHHHHhh
Q 024316 56 DVHTFHAYSEPLMEVLASLPAEEK-VILVGHSLGGVTLALAAD 97 (269)
Q Consensus 56 ~~~~~~~~~~~l~~~i~~l~~~~~-vilVGHSmGG~i~~~~a~ 97 (269)
....++.-.+-|.+.|++.+ | ==|+|.|-|+.++...+.
T Consensus 84 ~~~~~eesl~yl~~~i~enG---PFDGllGFSQGA~laa~l~~ 123 (230)
T KOG2551|consen 84 EYFGFEESLEYLEDYIKENG---PFDGLLGFSQGAALAALLAG 123 (230)
T ss_pred cccChHHHHHHHHHHHHHhC---CCccccccchhHHHHHHhhc
Confidence 01133444566777777663 3 347999999997777665
No 239
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=80.14 E-value=7.9 Score=34.40 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=29.7
Q ss_pred EEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCC
Q 024316 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGIN 50 (269)
Q Consensus 12 ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S 50 (269)
|+|||...-+. |+++++.|.+.||.|..+-..+.+..
T Consensus 2 il~~~~~~p~~--~~~la~~L~~~G~~v~~~~~~~~~~~ 38 (396)
T cd03818 2 ILFVHQNFPGQ--FRHLAPALAAQGHEVVFLTEPNAAPP 38 (396)
T ss_pred EEEECCCCchh--HHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 89999876544 78999999999999988877666543
No 240
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=79.73 E-value=7 Score=33.93 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=36.3
Q ss_pred eEEEeCCC-CCCCCCcccc-ccc----chHHhHHHHHHHHHhCC--CCCcEEEEEeChhhHHHHHHhh
Q 024316 38 RVTAVDLA-ASGINMKRIE-DVH----TFHAYSEPLMEVLASLP--AEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 38 ~Via~Dl~-G~G~S~~~~~-~~~----~~~~~~~~l~~~i~~l~--~~~~vilVGHSmGG~i~~~~a~ 97 (269)
+|+-+|.| |-|-|-...+ ... +.+++...|..+.+..+ ...+..|.|-|+||..+-.+|.
T Consensus 3 NvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~ 70 (319)
T PLN02213 3 NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQ 70 (319)
T ss_pred cEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHH
Confidence 68899999 8888742211 111 22344444444554443 2358999999999985554443
No 241
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=79.08 E-value=1.6 Score=37.77 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhhHHHHHHh
Q 024316 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAA 96 (269)
Q Consensus 66 ~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a 96 (269)
.+.+++++. +.+|-.++|||+|=+.+..++
T Consensus 73 al~~~l~~~-Gi~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 73 ALARLLRSW-GIKPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHHHHHHHT-THCESEEEESTTHHHHHHHHT
T ss_pred hhhhhhccc-ccccceeeccchhhHHHHHHC
Confidence 455666777 468999999999999777655
No 242
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=78.03 E-value=2.8 Score=35.84 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhhHHHHHHh
Q 024316 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAA 96 (269)
Q Consensus 66 ~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a 96 (269)
.+.+.+++. +.++..++|||+|=+.+..++
T Consensus 65 al~~~l~~~-g~~P~~v~GhS~GE~aAa~~a 94 (295)
T TIGR03131 65 AAWRALLAL-LPRPSAVAGYSVGEYAAAVVA 94 (295)
T ss_pred HHHHHHHhc-CCCCcEEeecCHHHHHHHHHh
Confidence 345556666 458999999999999777665
No 243
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=77.66 E-value=22 Score=25.62 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=45.4
Q ss_pred eEEEecCCCCCccchHHHHHHHHhC-CCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhh
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAG-GHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGG 89 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~-g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG 89 (269)
-|+.-|| .-+......+..+... -..+.++++. ...+.+++.+.+.+.++++.. .+-+||=-+|+|
T Consensus 2 iii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~----------~~~~~~~~~~~l~~~i~~~~~-~~~vlil~Dl~g 68 (116)
T PF03610_consen 2 IIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLY----------PDESIEDFEEKLEEAIEELDE-GDGVLILTDLGG 68 (116)
T ss_dssp EEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEET----------TTSCHHHHHHHHHHHHHHCCT-TSEEEEEESSTT
T ss_pred EEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECc----------CCCCHHHHHHHHHHHHHhccC-CCcEEEEeeCCC
Confidence 4778899 3445556666666554 3478888875 124778999999999988843 344445555555
Q ss_pred HHHH
Q 024316 90 VTLA 93 (269)
Q Consensus 90 ~i~~ 93 (269)
....
T Consensus 69 gsp~ 72 (116)
T PF03610_consen 69 GSPF 72 (116)
T ss_dssp SHHH
T ss_pred Cccc
Confidence 5333
No 244
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=76.84 E-value=3 Score=35.32 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=22.5
Q ss_pred HHHHHHhCCCCCcEEEEEeChhhHHHHHHhh
Q 024316 67 LMEVLASLPAEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 67 l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~ 97 (269)
+.+.+.+.++..+..++|||+|=+++..++.
T Consensus 72 l~~~l~~~g~i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 72 LYLKLKEQGGLKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred HHHHHHHcCCCCCCEEeecCHHHHHHHHHhC
Confidence 3445556633679999999999997776653
No 245
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=76.81 E-value=3 Score=35.52 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=21.9
Q ss_pred HHHHHHhCCCCCcEEEEEeChhhHHHHHHh
Q 024316 67 LMEVLASLPAEEKVILVGHSLGGVTLALAA 96 (269)
Q Consensus 67 l~~~i~~l~~~~~vilVGHSmGG~i~~~~a 96 (269)
+.+.++++ +.++-.++|||+|-+.+..++
T Consensus 72 ~~~~l~~~-Gi~p~~~~GhSlGE~aA~~~a 100 (298)
T smart00827 72 LARLWRSW-GVRPDAVVGHSLGEIAAAYVA 100 (298)
T ss_pred HHHHHHHc-CCcccEEEecCHHHHHHHHHh
Confidence 44555666 467899999999999777655
No 246
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.50 E-value=5.6 Score=36.56 Aligned_cols=39 Identities=28% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCCcEEEEEeChhhHHHHHHhh---h--CCcccceeEEEeccCC
Q 024316 76 AEEKVILVGHSLGGVTLALAAD---K--FPHKISVAVFVTAFMP 114 (269)
Q Consensus 76 ~~~~vilVGHSmGG~i~~~~a~---~--~p~~v~~lvli~~~~~ 114 (269)
+..||+|||.|+|+-++..... + .-+.|..++++.++++
T Consensus 445 G~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~ 488 (633)
T KOG2385|consen 445 GNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVP 488 (633)
T ss_pred CCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCcc
Confidence 4579999999999997764332 1 2245778888887655
No 247
>PLN00021 chlorophyllase
Probab=74.62 E-value=7.7 Score=33.64 Aligned_cols=48 Identities=15% Similarity=0.051 Sum_probs=33.5
Q ss_pred CCccEEEEEeCCCC---------CCChHHH-HHHHHhC-CCCeEEEEcCCCCCCCCCCc
Q 024316 207 GSVKRVYLVCEEDI---------GLPKQFQ-HWMIQNY-PVNEVMEIKGGDHMAMLSDP 254 (269)
Q Consensus 207 ~~~P~l~i~g~~D~---------~~~~~~~-~~~~~~~-~~~~~~~i~~~gH~~~~e~p 254 (269)
..+|+++|.++.|. +.|+... +.+.+.. +.+.+.+++++||+-++|+.
T Consensus 188 ~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~~~~~~~~~~~gH~~~~~~~ 246 (313)
T PLN00021 188 LDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKAPAVHFVAKDYGHMDMLDDD 246 (313)
T ss_pred CCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCCCeeeeeecCCCcceeecCC
Confidence 36899999888652 2334443 5555443 46677788999999998876
No 248
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=73.54 E-value=6.8 Score=32.59 Aligned_cols=88 Identities=24% Similarity=0.140 Sum_probs=52.2
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCC----------CCCCCCccccc-------ccchHHhHHHHHHHHH
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA----------ASGINMKRIED-------VHTFHAYSEPLMEVLA 72 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~----------G~G~S~~~~~~-------~~~~~~~~~~l~~~i~ 72 (269)
+.+++.||++.....-......+.+.+++++..|.. |++.+...... ......+..+......
T Consensus 50 p~v~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (299)
T COG1073 50 PAVVFLHGFGSSKEQSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDYRLLGA 129 (299)
T ss_pred ceEEeccCccccccCcchHHHHhhhceeEEeeeccccccccccccccccCccccccccchhheeeeccccccHHHHHHhh
Confidence 569999999988877555677777778888888752 22222211100 0011111112112222
Q ss_pred hCCCCCcEEEEEeChhhHHHHHHhhhCC
Q 024316 73 SLPAEEKVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 73 ~l~~~~~vilVGHSmGG~i~~~~a~~~p 100 (269)
. ..+.+..|+++|+..+...+...+
T Consensus 130 ~---~~~~~~~g~~~~~~~~~~~~~~~~ 154 (299)
T COG1073 130 S---LGPRILAGLSLGGPSAGALLAWGP 154 (299)
T ss_pred h---cCcceEEEEEeeccchHHHhhcch
Confidence 2 158999999999997777766655
No 249
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=69.71 E-value=8.9 Score=28.01 Aligned_cols=34 Identities=32% Similarity=0.562 Sum_probs=22.3
Q ss_pred CceEEEecCCC-CC------------ccchHH-----------HHHHHHhCCCeEEEe
Q 024316 9 EKHFVLVHGVN-HG------------AWCWYK-----------LKARLVAGGHRVTAV 42 (269)
Q Consensus 9 g~~ivlvHG~~-~~------------~~~w~~-----------~~~~L~~~g~~Via~ 42 (269)
-+.+|||||-. ++ .+.|.. ....|.+.|++|+-+
T Consensus 56 ~klaIfVDGcfWHgh~c~~~~~pk~n~~fW~~Ki~~n~~rD~~~~~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 56 YRCVIFIHGCFWHGHHCYLGKVPKTRTDFWSPKIEKNVERDRRVNSRLQELGWRVLRV 113 (117)
T ss_pred CCEEEEEcccccccCCcccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHCcCEEEEE
Confidence 46899999953 32 223433 345678889999865
No 250
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=68.69 E-value=5.7 Score=36.38 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=42.5
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhC-------CCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNY-------PVNEVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~-------~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
+++.+...|=.|..+|+-.++...+.. ....+.+++ +|||++.++|+...+.+..+..
T Consensus 425 ~Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp~d~P~~~~~~~~~~~~ 489 (498)
T COG2939 425 KLKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVPYDRPESSLEMVNLWIN 489 (498)
T ss_pred cceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-CcceeecCChHHHHHHHHHHHh
Confidence 456677778888888877665433332 233466777 9999999999999988877664
No 251
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=67.79 E-value=48 Score=27.90 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=47.2
Q ss_pred cCCCCceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCCCCCCCCCc-cc-ccccchHHhHHHHHHHHHhCCCCCcEE
Q 024316 5 VGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASGINMK-RI-EDVHTFHAYSEPLMEVLASLPAEEKVI 81 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl~G~G~S~~-~~-~~~~~~~~~~~~l~~~i~~l~~~~~vi 81 (269)
.++-|+||++=-|...+.+.|...++.+.+.|- +++.... |.|.. +. ....++.. +..+++... -+|+
T Consensus 128 ~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~r---G~s~y~~~~~~~~dl~~-----i~~lk~~~~-~pV~ 198 (260)
T TIGR01361 128 VGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCER---GIRTFEKATRNTLDLSA-----VPVLKKETH-LPII 198 (260)
T ss_pred HhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEC---CCCCCCCCCcCCcCHHH-----HHHHHHhhC-CCEE
Confidence 345589999999999999999999999987675 5666553 33322 11 11122222 222333212 4788
Q ss_pred E-EEeChh
Q 024316 82 L-VGHSLG 88 (269)
Q Consensus 82 l-VGHSmG 88 (269)
+ ..||.|
T Consensus 199 ~ds~Hs~G 206 (260)
T TIGR01361 199 VDPSHAAG 206 (260)
T ss_pred EcCCCCCC
Confidence 8 899988
No 252
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=67.02 E-value=52 Score=29.63 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=46.4
Q ss_pred CceEEEecCCCCCcc---chHHHHHHHHhCCCeEEEeCCCCC---CCCCcccccccchHHhHHHHHHHHHh--CCCCCcE
Q 024316 9 EKHFVLVHGVNHGAW---CWYKLKARLVAGGHRVTAVDLAAS---GINMKRIEDVHTFHAYSEPLMEVLAS--LPAEEKV 80 (269)
Q Consensus 9 g~~ivlvHG~~~~~~---~w~~~~~~L~~~g~~Via~Dl~G~---G~S~~~~~~~~~~~~~~~~l~~~i~~--l~~~~~v 80 (269)
+.|||++.-....-| ..++.+..|.+.|+.|+-|. +|+ |.... +...+.+++.+.+...+.. + .++++
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~-~g~la~~~~g~--gr~~~~~~I~~~~~~~~~~~~l-~gk~v 191 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPA-SGRLACGDVGP--GRMAEPEEIVAAAERALSPKDL-AGKRV 191 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCC-CccccCCCcCC--CCCCCHHHHHHHHHHHhhhccc-CCCEE
Confidence 578888886543333 25677888989999988554 453 33321 1245778888888777743 4 34567
Q ss_pred EEEEe
Q 024316 81 ILVGH 85 (269)
Q Consensus 81 ilVGH 85 (269)
++-|=
T Consensus 192 lITgG 196 (399)
T PRK05579 192 LITAG 196 (399)
T ss_pred EEeCC
Confidence 77776
No 253
>PRK02399 hypothetical protein; Provisional
Probab=65.98 E-value=67 Score=28.92 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=63.9
Q ss_pred EEecCCCCCcc-chHHHHHHHHhCCCeEEEeCCCCCCCCCccc----------------------ccccchHHhHHHHHH
Q 024316 13 VLVHGVNHGAW-CWYKLKARLVAGGHRVTAVDLAASGINMKRI----------------------EDVHTFHAYSEPLME 69 (269)
Q Consensus 13 vlvHG~~~~~~-~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~----------------------~~~~~~~~~~~~l~~ 69 (269)
|+|=|...+.. ....+...+.+.|.+|+.+|.-..|...... +...-++.++.-+..
T Consensus 6 I~iigT~DTK~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~ 85 (406)
T PRK02399 6 IYIAGTLDTKGEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAA 85 (406)
T ss_pred EEEEeccCCcHHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHH
Confidence 66668777775 4556677777789999999985444221110 011123444444555
Q ss_pred HHHhC---CCCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEe
Q 024316 70 VLASL---PAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT 110 (269)
Q Consensus 70 ~i~~l---~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~ 110 (269)
+++.| +...-++-+|=|+|..++..+....|=-|-|+++..
T Consensus 86 ~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlmVST 129 (406)
T PRK02399 86 FVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLMVST 129 (406)
T ss_pred HHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEEEEc
Confidence 55543 234469999999999988888877888888887654
No 254
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.62 E-value=68 Score=27.14 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCCCceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEE-E
Q 024316 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVIL-V 83 (269)
Q Consensus 6 ~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vil-V 83 (269)
|+-|+||+|=-|...+-+.|...++.+...|- +++.+ .+|. +.. ..|+....--.....+++. -.-+|++ .
T Consensus 131 a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~-~rG~--~t~---~~Y~~~~vdl~~i~~lk~~-~~~pV~~D~ 203 (266)
T PRK13398 131 GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLC-ERGI--RTF---ETYTRNTLDLAAVAVIKEL-SHLPIIVDP 203 (266)
T ss_pred hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEE-ECCC--CCC---CCCCHHHHHHHHHHHHHhc-cCCCEEEeC
Confidence 44489999999999999999999999987776 55554 4552 111 1233233323334444443 1246777 6
Q ss_pred EeChh
Q 024316 84 GHSLG 88 (269)
Q Consensus 84 GHSmG 88 (269)
.||.|
T Consensus 204 sHs~G 208 (266)
T PRK13398 204 SHATG 208 (266)
T ss_pred CCccc
Confidence 99998
No 255
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=65.45 E-value=9.1 Score=32.98 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=25.0
Q ss_pred HHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC
Q 024316 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 67 l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p 100 (269)
|.+.+++. +..+-++.|-|||+.+++.+|....
T Consensus 29 Vl~aL~e~-gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 29 VLKALEEA-GIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHc-CCCccEEEecCHHHHHHHHHHcCCC
Confidence 34445555 4578999999999999999887543
No 256
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=64.82 E-value=57 Score=29.30 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=46.0
Q ss_pred ceEEEecCCCCCcc---chHHHHHHHHhCCCeEEEeCCCCC---CCCCcccccccchHHhHHHHHHHHHh---CCCCCcE
Q 024316 10 KHFVLVHGVNHGAW---CWYKLKARLVAGGHRVTAVDLAAS---GINMKRIEDVHTFHAYSEPLMEVLAS---LPAEEKV 80 (269)
Q Consensus 10 ~~ivlvHG~~~~~~---~w~~~~~~L~~~g~~Via~Dl~G~---G~S~~~~~~~~~~~~~~~~l~~~i~~---l~~~~~v 80 (269)
.|||++.-.....| ...+.+..|++.|+.|+-|. +|+ |....- ...+++++.+.+.+.+.. + .++++
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~-~g~~ac~~~g~g--~~~~~~~i~~~v~~~~~~~~~~-~~~~v 188 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPD-SGLLACGDEGKG--RLAEPETIVKAAEREFSPKEDL-EGKRV 188 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCC-CcccccccccCC--CCCCHHHHHHHHHHHHhhcccc-CCceE
Confidence 68888887544433 45777888988888766554 332 433321 245778888888887754 4 34566
Q ss_pred EEEEe
Q 024316 81 ILVGH 85 (269)
Q Consensus 81 ilVGH 85 (269)
.+-|=
T Consensus 189 lit~g 193 (390)
T TIGR00521 189 LITAG 193 (390)
T ss_pred EEecC
Confidence 66666
No 257
>COG0218 Predicted GTPase [General function prediction only]
Probab=64.09 E-value=9.4 Score=30.69 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=19.8
Q ss_pred EEEeCCCCCCCCCcccccccchHHhHHHHHHHHHh
Q 024316 39 VTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS 73 (269)
Q Consensus 39 Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~ 73 (269)
.+.+|+||+|....+.. --+.+-+.+.++|+.
T Consensus 72 ~~lVDlPGYGyAkv~k~---~~e~w~~~i~~YL~~ 103 (200)
T COG0218 72 LRLVDLPGYGYAKVPKE---VKEKWKKLIEEYLEK 103 (200)
T ss_pred EEEEeCCCcccccCCHH---HHHHHHHHHHHHHhh
Confidence 67899999998754431 224455555555543
No 258
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=63.15 E-value=17 Score=30.99 Aligned_cols=73 Identities=21% Similarity=0.123 Sum_probs=38.3
Q ss_pred CceEEEecC--CCCCc--------------cchHHHHHHHHhCCCe--EEEeCCCCCCCCCcccccccchHHhHHHHHHH
Q 024316 9 EKHFVLVHG--VNHGA--------------WCWYKLKARLVAGGHR--VTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70 (269)
Q Consensus 9 g~~ivlvHG--~~~~~--------------~~w~~~~~~L~~~g~~--Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~ 70 (269)
+.++|++|- .+.+. ..+...++.+.+.|.. =|.+|- |+|.+.... ..-.+..-
T Consensus 133 ~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDP-GiGF~k~~~--------~n~~ll~~ 203 (282)
T PRK11613 133 GLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDP-GFGFGKNLS--------HNYQLLAR 203 (282)
T ss_pred CCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeC-CCCcCCCHH--------HHHHHHHH
Confidence 678999994 33221 1234455556667763 467774 666543211 11122222
Q ss_pred HHhCCCCCcEEEEEeChhhH
Q 024316 71 LASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 71 i~~l~~~~~vilVGHSmGG~ 90 (269)
++.+....-++|||+|==..
T Consensus 204 l~~l~~lg~Pilvg~SRKsf 223 (282)
T PRK11613 204 LAEFHHFNLPLLVGMSRKSM 223 (282)
T ss_pred HHHHHhCCCCEEEEecccHH
Confidence 23221224699999995444
No 259
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=62.88 E-value=19 Score=28.89 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=43.3
Q ss_pred CccEEEEEeCCCCCCChHHHHHHH---HhCCCC--eEEEEcCCCCCCCCCCc---HHHHHHHHHHHHh
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMI---QNYPVN--EVMEIKGGDHMAMLSDP---QKLCDCLSQISLK 267 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~---~~~~~~--~~~~i~~~gH~~~~e~p---~~~~~~l~~f~~~ 267 (269)
+.+.+-|=|+.|.++.+....+-. ..+|.. ..++.+|+||.-.+.-+ +++.-.|.+|+.+
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 566777899999998877665443 334422 35567999999877755 7788888888765
No 260
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=62.55 E-value=25 Score=27.80 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=40.7
Q ss_pred CCceEEEecCCCCCc---cchHHHHHHHHhCCCeEEEeCCCCC---CCCCcccccccchHHhHHHHHHHHH
Q 024316 8 EEKHFVLVHGVNHGA---WCWYKLKARLVAGGHRVTAVDLAAS---GINMKRIEDVHTFHAYSEPLMEVLA 72 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~---~~w~~~~~~L~~~g~~Via~Dl~G~---G~S~~~~~~~~~~~~~~~~l~~~i~ 72 (269)
.+.|||++.-....- -.+++.+..|++.|+.|+-+. +|+ |....- ...+++++++.+.+.+.
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~-~g~la~~~~g~g--~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPK-EGLLACGDEGYG--ALADIETILETIENTLK 179 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCC-CCccccCCccCC--CCCCHHHHHHHHHHHhc
Confidence 467888888533222 235677888999999888776 555 544321 23477888887777654
No 261
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=62.38 E-value=8.8 Score=35.94 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=22.9
Q ss_pred HHHHH-HhCCCCCcEEEEEeChhhHHHHHHhh
Q 024316 67 LMEVL-ASLPAEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 67 l~~~i-~~l~~~~~vilVGHSmGG~i~~~~a~ 97 (269)
+.+++ +.. +.+|-.++|||||=+.+.++|.
T Consensus 254 La~ll~~~~-GI~Pdav~GHSlGE~aAa~aAG 284 (538)
T TIGR02816 254 LTQLLCDEF-AIKPDFALGYSKGEASMWASLG 284 (538)
T ss_pred HHHHHHHhc-CCCCCEEeecCHHHHHHHHHhC
Confidence 44556 456 5689999999999998877764
No 262
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=61.97 E-value=9.1 Score=30.88 Aligned_cols=55 Identities=20% Similarity=0.071 Sum_probs=39.0
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhC----CCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNY----PVNEVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
..|.+..+|+.|.++|-...+...+.+ ...+.+.++|.+|.. .|+++.+ +..|++
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~---~~~e~~~-~~~~~~ 202 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHST---SPQELDD-LKSWIK 202 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccc---cHHHHHH-HHHHHH
Confidence 578899999999999998876655432 346788899999965 5555544 334443
No 263
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=61.48 E-value=16 Score=27.21 Aligned_cols=33 Identities=36% Similarity=0.554 Sum_probs=22.5
Q ss_pred ceEEEecCC-CCCc------------cchH-----------HHHHHHHhCCCeEEEe
Q 024316 10 KHFVLVHGV-NHGA------------WCWY-----------KLKARLVAGGHRVTAV 42 (269)
Q Consensus 10 ~~ivlvHG~-~~~~------------~~w~-----------~~~~~L~~~g~~Via~ 42 (269)
.+++|+||- |++. ..|- ..+..|++.|++|+.+
T Consensus 58 ~~viFvHGCFWh~H~c~~a~vPksnt~fWleKi~kNveRD~r~~~~L~~~GwrvlvV 114 (150)
T COG3727 58 RCVIFVHGCFWHGHHCYLAKVPKSNTEFWLEKIGKNVERDERDIKRLQQLGWRVLVV 114 (150)
T ss_pred eEEEEEeeeeccCCccccccCCCcchHHHHHHHhhhhhhhHHHHHHHHHcCCeEEEE
Confidence 689999995 3322 2352 2456788899999865
No 264
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=61.35 E-value=60 Score=23.55 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=45.7
Q ss_pred eEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~ 90 (269)
-|+.-|| .-+......+..+....-++.+++++- ..+.+++.+.+.++++.....+.+++.-==+||.
T Consensus 3 ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~~----------~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 3 IIIATHG--GFASGLLNSAEMILGEQENVEAIDFPP----------GESPDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred EEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeCC----------CCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 4677898 344445555666644334788888751 2377888889999998874334455554444777
Q ss_pred HHHHH
Q 024316 91 TLALA 95 (269)
Q Consensus 91 i~~~~ 95 (269)
....+
T Consensus 71 p~n~~ 75 (122)
T cd00006 71 PNNAA 75 (122)
T ss_pred HHHHH
Confidence 55443
No 265
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=60.46 E-value=88 Score=28.21 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=66.2
Q ss_pred EEEecCCCCCcc-chHHHHHHHHhCCCeEEEeCCCCCCCCCcccc----------------------cccchHHhHHHHH
Q 024316 12 FVLVHGVNHGAW-CWYKLKARLVAGGHRVTAVDLAASGINMKRIE----------------------DVHTFHAYSEPLM 68 (269)
Q Consensus 12 ivlvHG~~~~~~-~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~----------------------~~~~~~~~~~~l~ 68 (269)
-|+|=|...+.. ....+...+.+.|.+|+.+|.-=.|.+....+ ...-++.+++-+.
T Consensus 3 tI~iigT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga~ 82 (403)
T PF06792_consen 3 TIAIIGTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGAA 82 (403)
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHHH
Confidence 355567777765 46667788888999999999854443322110 1113344445555
Q ss_pred HHHHhCC---CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEe
Q 024316 69 EVLASLP---AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT 110 (269)
Q Consensus 69 ~~i~~l~---~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~ 110 (269)
.++..+- ...-++-+|=|.|..+++.+....|=-+-|+++..
T Consensus 83 ~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST 127 (403)
T PF06792_consen 83 RFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMVST 127 (403)
T ss_pred HHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEEEc
Confidence 5665552 23458999999999999988888888888887654
No 266
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=60.45 E-value=8.6 Score=33.97 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=43.7
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCCCCe-EEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYPVNE-VMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
.+|+.+|.++.|...+|.-+....+++|+.+ ++.+|+..|.. .+.-+...|..|++.
T Consensus 329 alpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~---~n~~i~esl~~flnr 386 (507)
T COG4287 329 ALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNL---INQFIKESLEPFLNR 386 (507)
T ss_pred cccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchh---hHHHHHHHHHHHHHH
Confidence 6899999999999888888887788888665 67789888854 455555666666654
No 267
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.12 E-value=15 Score=30.13 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=28.1
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCC
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~ 45 (269)
+.++.|||-|-. ++..=..++..|.+.||+|+|--.+
T Consensus 5 ~~~k~VlItgcs-~GGIG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 5 SQPKKVLITGCS-SGGIGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred cCCCeEEEeecC-CcchhHHHHHHHHhCCeEEEEEccc
Confidence 478999999854 4444556788899999999997543
No 268
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=59.49 E-value=26 Score=31.56 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=47.8
Q ss_pred CccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEE---EcCCCCCCCC---CCcHHHHHHHHHHHHhh
Q 024316 208 SVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVME---IKGGDHMAML---SDPQKLCDCLSQISLKY 268 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~---i~~~gH~~~~---e~p~~~~~~l~~f~~~~ 268 (269)
++|+.+.+|++|.++.++..+.+....+++.+.. +++-.|+=++ +.++++.+-|.+++++|
T Consensus 332 ~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 332 KVPTALYYGDNDWLADPEDVLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred ccCEEEEecCCcccCCHHHHHHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 6899999999999999999998887776554422 6777886443 46899999988888764
No 269
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=58.62 E-value=15 Score=31.76 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=38.2
Q ss_pred chHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhC
Q 024316 24 CWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKF 99 (269)
Q Consensus 24 ~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~ 99 (269)
.|++++..|... + +++=|-|=|.. . -..+ =+++.+++. +...-.++|-|+|+.++..+|..+
T Consensus 3 d~~rl~r~l~~~--~-~gLvL~GGG~R--------G-~ahi-GvL~aLee~-gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 3 DFSRLARVLTGN--S-IALVLGGGGAR--------G-CAHI-GVIKALEEA-GIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred hHHHHHHHhcCC--C-EEEEECChHHH--------H-HHHH-HHHHHHHHc-CCCCCEEEEECHHHHHHHHHHcCC
Confidence 477788888543 2 45555553322 1 1222 344455555 456778899999999988888663
No 270
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=57.75 E-value=22 Score=32.86 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=54.8
Q ss_pred HHHHHHhCCCeEEEeCCCCCCCCCc----c-ccccc--------chHHhHHHHHHHHHhCC--CCCcEEEEEeChhhHHH
Q 024316 28 LKARLVAGGHRVTAVDLAASGINMK----R-IEDVH--------TFHAYSEPLMEVLASLP--AEEKVILVGHSLGGVTL 92 (269)
Q Consensus 28 ~~~~L~~~g~~Via~Dl~G~G~S~~----~-~~~~~--------~~~~~~~~l~~~i~~l~--~~~~vilVGHSmGG~i~ 92 (269)
....+ +.||-+++=|- ||..+.. . ..+.. .+...+..-.+++++.- .-+.--..|.|-||--+
T Consensus 52 ~~~~~-~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqg 129 (474)
T PF07519_consen 52 MATAL-ARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQG 129 (474)
T ss_pred cchhh-hcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchH
Confidence 55667 46999998884 6654422 1 11111 23333344445555441 12468899999999999
Q ss_pred HHHhhhCCcccceeEEEecc
Q 024316 93 ALAADKFPHKISVAVFVTAF 112 (269)
Q Consensus 93 ~~~a~~~p~~v~~lvli~~~ 112 (269)
...|+++|+.+++++.-+|.
T Consensus 130 l~~AQryP~dfDGIlAgaPA 149 (474)
T PF07519_consen 130 LMAAQRYPEDFDGILAGAPA 149 (474)
T ss_pred HHHHHhChhhcCeEEeCCch
Confidence 99999999999999977764
No 271
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=56.93 E-value=12 Score=31.44 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=15.7
Q ss_pred HHHHhCCCCCcEEEEEeChhhH
Q 024316 69 EVLASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 69 ~~i~~l~~~~~vilVGHSmGG~ 90 (269)
.+.+.+.....+++.|||+|..
T Consensus 226 ~~~~~l~~i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 226 SFFESLSDIDEIIIYGHSLGEV 247 (270)
T ss_pred HHHhhhcCCCEEEEEeCCCchh
Confidence 3344443446899999999987
No 272
>PRK10279 hypothetical protein; Provisional
Probab=56.38 E-value=16 Score=31.44 Aligned_cols=31 Identities=26% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC
Q 024316 69 EVLASLPAEEKVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 69 ~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p 100 (269)
+.+++. +...-.++|-|+|+.++..+|....
T Consensus 25 ~aL~E~-gi~~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 25 NALKKV-GIEIDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHc-CCCcCEEEEEcHHHHHHHHHHcCCh
Confidence 344445 4567899999999999988886543
No 273
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=55.99 E-value=16 Score=28.36 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC
Q 024316 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 68 ~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p 100 (269)
.+.+++. +...-.++|-|+|+.++..++...+
T Consensus 17 l~aL~e~-gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 17 AKALRER-GPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCC
Confidence 3334444 3467889999999999988886543
No 274
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=54.68 E-value=75 Score=28.34 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=59.2
Q ss_pred CceEEEecCCCCCcc-------chHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEE
Q 024316 9 EKHFVLVHGVNHGAW-------CWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVI 81 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-------~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vi 81 (269)
...|||+||=++++. -|..+++.+.+++ -+-.+|..=.|.-+ .+++.+.-|-.+++.. +-+
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~-lip~~D~AYQGF~~-------GleeDa~~lR~~a~~~----~~~ 238 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERG-LIPFFDIAYQGFAD-------GLEEDAYALRLFAEVG----PEL 238 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-Ceeeeehhhhhhcc-------chHHHHHHHHHHHHhC----CcE
Confidence 457999999888774 6999999888765 45567776333221 3556666666666543 338
Q ss_pred EEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 82 LVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 82 lVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
+|.-|.-=. ...+.+||-++.+++.
T Consensus 239 lva~S~SKn-----fgLYgERVGa~~vva~ 263 (396)
T COG1448 239 LVASSFSKN-----FGLYGERVGALSVVAE 263 (396)
T ss_pred EEEehhhhh-----hhhhhhccceeEEEeC
Confidence 898887544 3356799999998864
No 275
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=54.18 E-value=94 Score=23.94 Aligned_cols=77 Identities=23% Similarity=0.171 Sum_probs=48.9
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
+...+++-|-.... ....+.+.|- +|+.+|.+.. ..++.+.+++.|.+++++.+ ..++|+|||-
T Consensus 29 ~~v~~v~~G~~~~~-----~~~~~~~~Gad~v~~~~~~~~--------~~~~~~~~a~al~~~i~~~~--p~~Vl~~~t~ 93 (168)
T cd01715 29 GEVTALVIGSGAEA-----VAAALKAYGADKVLVAEDPAL--------AHYLAEPYAPALVALAKKEK--PSHILAGATS 93 (168)
T ss_pred CCEEEEEECCChHH-----HHHHHHhcCCCEEEEecChhh--------cccChHHHHHHHHHHHHhcC--CCEEEECCCc
Confidence 45566666644222 1333434454 7787764421 23567899999999998762 5799999987
Q ss_pred hhH-HHHHHhhhCC
Q 024316 88 GGV-TLALAADKFP 100 (269)
Q Consensus 88 GG~-i~~~~a~~~p 100 (269)
=|- ++..+|.+..
T Consensus 94 ~g~~la~rlAa~L~ 107 (168)
T cd01715 94 FGKDLAPRVAAKLD 107 (168)
T ss_pred cccchHHHHHHHhC
Confidence 665 7777765543
No 276
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=53.75 E-value=12 Score=29.38 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=10.8
Q ss_pred CcEEEEEeChhhH
Q 024316 78 EKVILVGHSLGGV 90 (269)
Q Consensus 78 ~~vilVGHSmGG~ 90 (269)
...||||||+--=
T Consensus 101 ~~tILVGHsL~nD 113 (174)
T cd06143 101 LGCIFVGHGLAKD 113 (174)
T ss_pred CCCEEEeccchhH
Confidence 4689999999875
No 277
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=53.67 E-value=47 Score=25.45 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=41.3
Q ss_pred HHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH-HHHHHhhhC
Q 024316 30 ARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV-TLALAADKF 99 (269)
Q Consensus 30 ~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~-i~~~~a~~~ 99 (269)
..|+..|. +|+.++-+.. ..++.+.+++.|.+++++.+ ...+|+|||--|. ++..+|.+.
T Consensus 52 ~~l~~~G~d~v~~~~~~~~--------~~~~~~~~a~~l~~~~~~~~--~~lVl~~~t~~g~~la~~lA~~L 113 (164)
T PF01012_consen 52 KALAKYGADKVYHIDDPAL--------AEYDPEAYADALAELIKEEG--PDLVLFGSTSFGRDLAPRLAARL 113 (164)
T ss_dssp HHHHSTTESEEEEEE-GGG--------TTC-HHHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhhhcCCcEEEEecCccc--------cccCHHHHHHHHHHHHHhcC--CCEEEEcCcCCCCcHHHHHHHHh
Confidence 34543565 7898886532 23567889999999999863 5799999998777 677776553
No 278
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=51.86 E-value=83 Score=25.55 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=24.4
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCC
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~ 45 (269)
.++..+-|.+ +..=+-+...|++.|+||+..|+.
T Consensus 14 sk~~~vtGg~--sGIGrAia~~la~~Garv~v~dl~ 47 (256)
T KOG1200|consen 14 SKVAAVTGGS--SGIGRAIAQLLAKKGARVAVADLD 47 (256)
T ss_pred cceeEEecCC--chHHHHHHHHHHhcCcEEEEeecc
Confidence 3566666644 334467888899999999998764
No 279
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=51.60 E-value=19 Score=31.94 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCCccEEEEEeCCCCCCChHHHHHHHHhCCCC-eEEEEcCCCCCCCCCCcHHHHHHHHHHHHh
Q 024316 206 YGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVN-EVMEIKGGDHMAMLSDPQKLCDCLSQISLK 267 (269)
Q Consensus 206 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~l~~f~~~ 267 (269)
+.++|+-.-....|..-.+..+ +..+.|+. .....+..||+..+|.|+.+++-+.+|+++
T Consensus 402 ~v~vPtg~a~f~~el~~~~~~~--lrdky~nL~~~s~~~~GGhFaalE~p~~La~D~~~FV~~ 462 (469)
T KOG2565|consen 402 QVRVPTGCARFKFELWHTSDDV--LRDKYPNLTHSSYHPKGGHFAALEDPKKLAQDFFSFVEK 462 (469)
T ss_pred ccccchhhhccccchhhCcHHH--HhhhcccceeeEeccCCcchhhhhCcHHHHHHHHHHHHH
Confidence 3456776666666654333222 23445543 233457799999999999999999999875
No 280
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=50.88 E-value=24 Score=29.84 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=22.9
Q ss_pred HHHHHHhCCCCCcEEEEEeChhhHHHHHHhhh
Q 024316 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADK 98 (269)
Q Consensus 67 l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~ 98 (269)
+.+.+++. +...-.++|-|+|+.++..+|..
T Consensus 28 VL~aLeE~-gi~~d~v~GtSaGAiiga~ya~g 58 (269)
T cd07227 28 ILQALEEA-GIPIDAIGGTSIGSFVGGLYARE 58 (269)
T ss_pred HHHHHHHc-CCCccEEEEECHHHHHHHHHHcC
Confidence 33444555 45677889999999999888865
No 281
>PF03283 PAE: Pectinacetylesterase
Probab=50.66 E-value=35 Score=30.25 Aligned_cols=38 Identities=34% Similarity=0.642 Sum_probs=23.1
Q ss_pred CCCCCcEEEEEeChhhHHHHHHh----hhCCcccceeEEEec
Q 024316 74 LPAEEKVILVGHSLGGVTLALAA----DKFPHKISVAVFVTA 111 (269)
Q Consensus 74 l~~~~~vilVGHSmGG~i~~~~a----~~~p~~v~~lvli~~ 111 (269)
++.-++|+|-|.|.||.-+..-+ ...|..++-.++.++
T Consensus 152 l~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~Ds 193 (361)
T PF03283_consen 152 LPNAKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDS 193 (361)
T ss_pred CcccceEEEeccChHHHHHHHHHHHHHHHhccCceEEEeccc
Confidence 43346899999999999544333 345654443333343
No 282
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=50.62 E-value=26 Score=27.64 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhC
Q 024316 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKF 99 (269)
Q Consensus 66 ~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~ 99 (269)
-+.+.+++. +...-+++|-|.||.++..++...
T Consensus 16 Gvl~~L~e~-~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 16 GALKALEEA-GILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHHHHHc-CCCcceEEEECHHHHHHHHHHcCC
Confidence 344444545 345688899999999988887643
No 283
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=50.14 E-value=95 Score=25.43 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=38.0
Q ss_pred CceEEEecCCCCCccc-hHHHHHHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 9 EKHFVLVHGVNHGAWC-WYKLKARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~-w~~~~~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
...|++.||..+++.. |..+--.|.+.|| +|+..-.-|+ +. .++|++.++.. +.+.|.|+
T Consensus 138 e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~y----------P~----~d~vi~~l~~~-~~~~v~L~ 199 (265)
T COG4822 138 EILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGY----------PL----VDTVIEYLRKN-GIKEVHLI 199 (265)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCC----------Cc----HHHHHHHHHHc-CCceEEEe
Confidence 4578889999888764 5666666677788 6666555443 11 34566666666 44565543
No 284
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=50.09 E-value=29 Score=32.03 Aligned_cols=58 Identities=16% Similarity=0.028 Sum_probs=40.6
Q ss_pred cEEEEEeCCCCCCChHHHHH----HHHhCCC--------CeEEEEcCCCCCCCCC--CcHHHHHHHHHHHHh
Q 024316 210 KRVYLVCEEDIGLPKQFQHW----MIQNYPV--------NEVMEIKGGDHMAMLS--DPQKLCDCLSQISLK 267 (269)
Q Consensus 210 P~l~i~g~~D~~~~~~~~~~----~~~~~~~--------~~~~~i~~~gH~~~~e--~p~~~~~~l~~f~~~ 267 (269)
+.++.+|-.|.++|+..... +.+..+. .++..+||.+|+---. .+-.....|.+|+|+
T Consensus 355 KLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 355 KLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred eEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 45667899999999887644 3344432 2578889999998666 445566667788764
No 285
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=49.52 E-value=95 Score=24.19 Aligned_cols=77 Identities=19% Similarity=0.087 Sum_probs=47.7
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
+...+++-|-..... . ...+...|. +|+.++-+.. ..++.+.+++.|.+++++.+ ...+|+|||-
T Consensus 36 ~~v~~v~~G~~~~~~-~---~~~~~~~Gad~v~~~~~~~~--------~~~~~~~~a~~l~~~i~~~~--p~~Vl~g~t~ 101 (181)
T cd01985 36 GEVTALVIGPPAAEV-A---LREALAMGADKVLLVEDPAL--------AGYDPEATAKALAALIKKEK--PDLILAGATS 101 (181)
T ss_pred CeEEEEEECChHHHH-H---HHHHHHhCCCEEEEEecCcc--------cCCChHHHHHHHHHHHHHhC--CCEEEECCcc
Confidence 455666656442211 1 122223354 7888775432 23567889999999998762 5799999986
Q ss_pred hhH-HHHHHhhhC
Q 024316 88 GGV-TLALAADKF 99 (269)
Q Consensus 88 GG~-i~~~~a~~~ 99 (269)
-|- ++..+|.+.
T Consensus 102 ~g~~la~rlA~~L 114 (181)
T cd01985 102 IGKQLAPRVAALL 114 (181)
T ss_pred cccCHHHHHHHHh
Confidence 655 777776553
No 286
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=49.50 E-value=13 Score=33.67 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcccce
Q 024316 64 SEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISV 105 (269)
Q Consensus 64 ~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~ 105 (269)
+..+..+.|+ +..+-+++|-|.|+.+++.++.+.++++..
T Consensus 89 iGVLkaL~E~--gl~p~vIsGTSaGAivAal~as~~~eel~~ 128 (421)
T cd07230 89 IGVLKALFEA--NLLPRIISGSSAGSIVAAILCTHTDEEIPE 128 (421)
T ss_pred HHHHHHHHHc--CCCCCEEEEECHHHHHHHHHHcCCHHHHHH
Confidence 3444444443 345678999999999999888776766544
No 287
>PHA02114 hypothetical protein
Probab=49.10 E-value=26 Score=24.65 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=25.4
Q ss_pred eEEEecCCCCCccchHHHHHHHHhCCCeEEEe
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAV 42 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~ 42 (269)
+|||=--+-.|-.-|-.++..|++.||+|++-
T Consensus 84 tivldvn~amsr~pwi~v~s~le~~g~~vvat 115 (127)
T PHA02114 84 TIVLDVNYAMSRAPWIKVISRLEEAGFNVVAT 115 (127)
T ss_pred eEEEEehhhhccCcHHHHHHHHHhcCceeeeh
Confidence 56666666667777999999999999999874
No 288
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=49.08 E-value=1.5e+02 Score=24.87 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=32.0
Q ss_pred cCCCCceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeC
Q 024316 5 VGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVD 43 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~D 43 (269)
.++-|+||++=-|...+.+.|...++.+.+.|- +|+...
T Consensus 118 va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 118 LSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred HHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 345589999999999999999999999987776 555554
No 289
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=48.69 E-value=12 Score=25.79 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=9.6
Q ss_pred ccCCCCceE-EEecCCC
Q 024316 4 VVGMEEKHF-VLVHGVN 19 (269)
Q Consensus 4 ~~~~~g~~i-vlvHG~~ 19 (269)
|+||..+.+ +||||=.
T Consensus 8 W~GMk~~~LQLmvyG~n 24 (88)
T PF09087_consen 8 WVGMKNPELQLMVYGKN 24 (88)
T ss_dssp ETT-SS-EEEEEEESTT
T ss_pred hcCCCCCcEEEEEecCC
Confidence 677776666 7777744
No 290
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=48.65 E-value=8.8 Score=16.61 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=8.3
Q ss_pred eEEEecCCCCC
Q 024316 11 HFVLVHGVNHG 21 (269)
Q Consensus 11 ~ivlvHG~~~~ 21 (269)
.++-+||||..
T Consensus 3 a~~~L~~WWrt 13 (14)
T PF08255_consen 3 ATFSLHGWWRT 13 (14)
T ss_pred eEEEEeeEEEc
Confidence 57788998754
No 291
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=48.64 E-value=73 Score=25.47 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC--cccc
Q 024316 27 KLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFP--HKIS 104 (269)
Q Consensus 27 ~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p--~~v~ 104 (269)
...+.+...++++|.+|-+|.... -.+..+++.++++.. ....++||--+..+.-....+.++- -.+.
T Consensus 74 ~~l~~~~~~~~D~vlIDT~Gr~~~---------d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~ 143 (196)
T PF00448_consen 74 EALEKFRKKGYDLVLIDTAGRSPR---------DEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGID 143 (196)
T ss_dssp HHHHHHHHTTSSEEEEEE-SSSST---------HHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC
T ss_pred HHHHHHhhcCCCEEEEecCCcchh---------hHHHHHHHHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCc
Confidence 344455567899999999986322 244455566666655 2346777777777774443333332 2467
Q ss_pred eeEEE
Q 024316 105 VAVFV 109 (269)
Q Consensus 105 ~lvli 109 (269)
++|+-
T Consensus 144 ~lIlT 148 (196)
T PF00448_consen 144 GLILT 148 (196)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77743
No 292
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=48.60 E-value=31 Score=28.15 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHhCCCCCcEEEEEeChhhHHHHHHhhhC
Q 024316 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKF 99 (269)
Q Consensus 68 ~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~ 99 (269)
.+.+++. +.+.-.++|-|.|+.++..+|...
T Consensus 19 L~aL~e~-gi~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 19 LAALLEM-GLEPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred HHHHHHc-CCCceEEEEeCHHHHHHHHHHcCC
Confidence 3344444 346678999999999998888654
No 293
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=48.14 E-value=30 Score=29.69 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=42.6
Q ss_pred ceEEEecCCCCCccchHHHHHHHHh-CCCeEEEe----CCCCCCCCCcccc---cccchHHhHHHHHHHHHhCCCCCcEE
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVA-GGHRVTAV----DLAASGINMKRIE---DVHTFHAYSEPLMEVLASLPAEEKVI 81 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~-~g~~Via~----Dl~G~G~S~~~~~---~~~~~~~~~~~l~~~i~~l~~~~~vi 81 (269)
.-|+|.|| +|...=..+...-++ +.|+||.. .-.||-.+..... .+.-+.+ ..+.+.+- ...+||
T Consensus 163 nEviLT~g--~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~d--aaVfA~Ms---rVnKVI 235 (353)
T KOG1465|consen 163 NEVILTLG--SSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPD--AAVFAMMS---RVNKVI 235 (353)
T ss_pred CceEEecC--ccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEecc--HHHHHHhh---hcceEE
Confidence 35899999 333333334444444 56898754 4456655543221 1001111 12334443 336899
Q ss_pred EEEeCh----------hhHHHHHHhhhC
Q 024316 82 LVGHSL----------GGVTLALAADKF 99 (269)
Q Consensus 82 lVGHSm----------GG~i~~~~a~~~ 99 (269)
+.-|+. |+..+..+|.++
T Consensus 236 igt~avl~NGgl~~~~G~~~vAlaAk~h 263 (353)
T KOG1465|consen 236 IGTHAVLANGGLRAPSGVHTVALAAKHH 263 (353)
T ss_pred EEeeeEecCCCeeccchHHHHHHHHHhc
Confidence 888875 445555556554
No 294
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=47.93 E-value=15 Score=32.87 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcccceeE
Q 024316 63 YSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAV 107 (269)
Q Consensus 63 ~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lv 107 (269)
++..+.++.+ . +..+-++.|-|.|+.+++.+|.+.++.+..+.
T Consensus 98 h~Gv~kaL~e-~-gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l 140 (391)
T cd07229 98 HLGVVKALWL-R-GLLPRIITGTATGALIAALVGVHTDEELLRFL 140 (391)
T ss_pred HHHHHHHHHH-c-CCCCceEEEecHHHHHHHHHHcCCHHHHHHHH
Confidence 3444544444 3 44677899999999999999887666665554
No 295
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=47.88 E-value=29 Score=28.16 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC
Q 024316 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 67 l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p 100 (269)
+.+.+++. +...-.++|-|.|+.++..+|...+
T Consensus 16 vl~aL~e~-g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 16 VLKALAEA-GIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCc
Confidence 44445555 3456788999999999998887664
No 296
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=47.56 E-value=28 Score=26.20 Aligned_cols=42 Identities=24% Similarity=0.153 Sum_probs=28.7
Q ss_pred eEEEecCCCCCccch--HHHHHHHHhCCCeEEEeCCCCCCCCCc
Q 024316 11 HFVLVHGVNHGAWCW--YKLKARLVAGGHRVTAVDLAASGINMK 52 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w--~~~~~~L~~~g~~Via~Dl~G~G~S~~ 52 (269)
|+|.|-|.-.++-+. +.++..|.++||+|.++=.-+||..+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~ 44 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEI 44 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCccc
Confidence 688899987666543 778999998999998776666666543
No 297
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=47.54 E-value=1.8e+02 Score=25.22 Aligned_cols=61 Identities=11% Similarity=0.179 Sum_probs=42.7
Q ss_pred HHHHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH-HHHHHhhhC
Q 024316 28 LKARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV-TLALAADKF 99 (269)
Q Consensus 28 ~~~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~-i~~~~a~~~ 99 (269)
..+.|...|- +||..|.++ . .+..+.|++.+.+++++.. ..++|+++|.=|- ++..+|.+.
T Consensus 40 ~~~~l~~~Gad~V~~~~~~~---~------~~~~e~~~~al~~~i~~~~--P~~vL~~~T~~Grdla~rlAarL 102 (312)
T PRK11916 40 QAQAVMPYGPKCIYVLEQND---A------LQRTENYAESIAALLKDKH--PAMLLLAATKRGKALAARLSVQL 102 (312)
T ss_pred HHHHHHhcCCCEEEEeCCcc---c------ccChHHHHHHHHHHHHhcC--CCEEEECCCcchHHHHHHHHHHh
Confidence 3555544454 788888762 1 1346888999999998762 5799999998886 677766553
No 298
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=47.40 E-value=17 Score=26.95 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeC
Q 024316 64 SEPLMEVLASLPAEEKVILVGHS 86 (269)
Q Consensus 64 ~~~l~~~i~~l~~~~~vilVGHS 86 (269)
.+...+..+.++ .+.+|||||.
T Consensus 29 ~~~a~~~~~~ip-~GQPIlVGHH 50 (126)
T PF12083_consen 29 YEAANRMAEAIP-FGQPILVGHH 50 (126)
T ss_pred HHHHHHHHhccC-CCCCeecccc
Confidence 344445555664 3789999984
No 299
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins. Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and repli
Probab=46.99 E-value=17 Score=27.97 Aligned_cols=35 Identities=23% Similarity=0.559 Sum_probs=23.0
Q ss_pred CCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 47 SGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 47 ~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
||-++....+..++++....+.+++ +..+||||++
T Consensus 51 ~GIt~~~l~~a~~~~~v~~~l~~~l------~~~vlV~Hn~ 85 (157)
T cd06149 51 SGIRRQHLVNATPFAVAQKEILKIL------KGKVVVGHAI 85 (157)
T ss_pred CCCCHHHHhcCCCHHHHHHHHHHHc------CCCEEEEeCc
Confidence 6766544444567777666666654 2457999994
No 300
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=46.78 E-value=46 Score=26.02 Aligned_cols=42 Identities=12% Similarity=-0.160 Sum_probs=29.7
Q ss_pred CCccEEEEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCC
Q 024316 207 GSVKRVYLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMA 249 (269)
Q Consensus 207 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~ 249 (269)
.+.|+++.+|+.|.+=..+.. .-....+..+++.++++.|-+
T Consensus 141 l~tPtli~qGtrD~fGtr~~V-a~y~ls~~iev~wl~~adHDL 182 (213)
T COG3571 141 LKTPTLITQGTRDEFGTRDEV-AGYALSDPIEVVWLEDADHDL 182 (213)
T ss_pred CCCCeEEeecccccccCHHHH-HhhhcCCceEEEEeccCcccc
Confidence 378999999999987554333 112223567899999999965
No 301
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=46.07 E-value=92 Score=26.89 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=48.2
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCC----CC------------------CCCCCcccccccchHHhHHH
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDL----AA------------------SGINMKRIEDVHTFHAYSEP 66 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl----~G------------------~G~S~~~~~~~~~~~~~~~~ 66 (269)
.++||+|-|-..++.+ .++-.|++..-.+|..|= +| |.-+-..++..++..+|.++
T Consensus 3 ~~~ii~I~GpTasGKS--~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~ 80 (300)
T PRK14729 3 ENKIVFIFGPTAVGKS--NILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE 80 (300)
T ss_pred CCcEEEEECCCccCHH--HHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence 4568899998766654 244455554447777763 22 22221223356899999999
Q ss_pred HHHHHHhC-CCCCcEEEEEeC
Q 024316 67 LMEVLASL-PAEEKVILVGHS 86 (269)
Q Consensus 67 l~~~i~~l-~~~~~vilVGHS 86 (269)
..+.|+++ ..++.++|||=|
T Consensus 81 a~~~i~~i~~~gk~PilvGGT 101 (300)
T PRK14729 81 ALKIIKELRQQKKIPIFVGGS 101 (300)
T ss_pred HHHHHHHHHHCCCCEEEEeCc
Confidence 99888865 234678999854
No 302
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=46.05 E-value=1.2e+02 Score=25.85 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=43.9
Q ss_pred HHHHHhCCCeEEEe------CCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH-----HHHHHhh
Q 024316 29 KARLVAGGHRVTAV------DLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV-----TLALAAD 97 (269)
Q Consensus 29 ~~~L~~~g~~Via~------Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~-----i~~~~a~ 97 (269)
+..|+..|++|-++ ..+|||...+.......+.++.+++.+ ++.+ ..=++++-|. +|.. ++-...+
T Consensus 21 ~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~-~~~~-~~~davltGY-lgs~~qv~~i~~~v~~ 97 (281)
T COG2240 21 IFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEA-IDKL-GECDAVLTGY-LGSAEQVRAIAGIVKA 97 (281)
T ss_pred HHHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHh-cccc-cccCEEEEcc-CCCHHHHHHHHHHHHH
Confidence 45577778877554 789999876543222233444443332 1122 2237999997 3333 1222211
Q ss_pred ---hCCcccceeEEEeccCCCCC
Q 024316 98 ---KFPHKISVAVFVTAFMPDTT 117 (269)
Q Consensus 98 ---~~p~~v~~lvli~~~~~~~~ 117 (269)
.+|+ .+++++|.+-+.+
T Consensus 98 vk~~~P~---~~~l~DPVMGD~g 117 (281)
T COG2240 98 VKEANPN---ALYLCDPVMGDPG 117 (281)
T ss_pred HhccCCC---eEEEeCCcccCCC
Confidence 2343 5677888765544
No 303
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=45.96 E-value=15 Score=29.49 Aligned_cols=25 Identities=4% Similarity=-0.147 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHhC
Q 024316 210 KRVYLVCEEDIGLPKQFQHWMIQNY 234 (269)
Q Consensus 210 P~l~i~g~~D~~~~~~~~~~~~~~~ 234 (269)
|.++++|++|.++|++.++.+.+.+
T Consensus 170 ~~~i~hG~~D~vVp~~~~~~~~~~l 194 (212)
T TIGR01840 170 IMSVVHGDADYTVLPGNADEIRDAM 194 (212)
T ss_pred eEEEEEcCCCceeCcchHHHHHHHH
Confidence 3567899999999999988876643
No 304
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=45.91 E-value=84 Score=24.20 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=7.0
Q ss_pred CCeEEEeCCCC
Q 024316 36 GHRVTAVDLAA 46 (269)
Q Consensus 36 g~~Via~Dl~G 46 (269)
|-.|+++|.+|
T Consensus 67 ~~~vi~Ld~~G 77 (155)
T COG1576 67 GSYVVLLDIRG 77 (155)
T ss_pred CCeEEEEecCC
Confidence 44667777665
No 305
>PRK14974 cell division protein FtsY; Provisional
Probab=45.76 E-value=1.4e+02 Score=26.29 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=38.1
Q ss_pred HhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC--cccceeEEE
Q 024316 33 VAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFP--HKISVAVFV 109 (269)
Q Consensus 33 ~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p--~~v~~lvli 109 (269)
.+.+++++.+|-+|.... -..+.++|..+.+.+.. ..++||.-++-|.-+..-+..+. -.+.++|+-
T Consensus 219 ~~~~~DvVLIDTaGr~~~---------~~~lm~eL~~i~~~~~p-d~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHT---------DANLMDELKKIVRVTKP-DLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred HhCCCCEEEEECCCccCC---------cHHHHHHHHHHHHhhCC-ceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 445788999998875432 13444555555554422 35778888777763333333332 245666644
No 306
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=45.51 E-value=1.1e+02 Score=27.81 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=42.7
Q ss_pred HHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCc--cccee
Q 024316 29 KARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPH--KISVA 106 (269)
Q Consensus 29 ~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~--~v~~l 106 (269)
+..+...+|+++.+|-+|.-. .-+.+.+++..+.+.. .-..++||--++-|.-+...|..+.+ .+.++
T Consensus 175 l~~~~~~~~DvViIDTaGr~~---------~d~~lm~El~~i~~~~-~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~ 244 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSGRHK---------QEDSLFEEMLQVAEAI-QPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSV 244 (429)
T ss_pred HHHHHhCCCCEEEEECCCCCc---------chHHHHHHHHHHhhhc-CCcEEEEEeccccChhHHHHHHHHHhccCCcEE
Confidence 334445589999999998422 1134555666666555 22468899988888644444444433 45666
Q ss_pred EE
Q 024316 107 VF 108 (269)
Q Consensus 107 vl 108 (269)
|+
T Consensus 245 Il 246 (429)
T TIGR01425 245 II 246 (429)
T ss_pred EE
Confidence 64
No 307
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=45.44 E-value=24 Score=28.85 Aligned_cols=29 Identities=41% Similarity=0.451 Sum_probs=22.2
Q ss_pred eEEEecCCCCCccchHHHHHHHHhCCCeEEEeCC
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDL 44 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl 44 (269)
.=|||.|=|.+.. +..|+++||+|+++|+
T Consensus 39 ~rvLvPgCG~g~D-----~~~La~~G~~VvGvDl 67 (218)
T PF05724_consen 39 GRVLVPGCGKGYD-----MLWLAEQGHDVVGVDL 67 (218)
T ss_dssp EEEEETTTTTSCH-----HHHHHHTTEEEEEEES
T ss_pred CeEEEeCCCChHH-----HHHHHHCCCeEEEEec
Confidence 4578888766644 5567888999999997
No 308
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=45.24 E-value=48 Score=26.54 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=35.0
Q ss_pred CccEEEEEeCCCCC-CChHHHHHHHHhCCCCeEEEEcCCCCCCCCCCcHHHHHHHHHHHH
Q 024316 208 SVKRVYLVCEEDIG-LPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQKLCDCLSQISL 266 (269)
Q Consensus 208 ~~P~l~i~g~~D~~-~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~f~~ 266 (269)
..|++-|.|+++.- ..| . -..++.++..+| .||. +.++.+++++.|.+-++
T Consensus 139 ~~~v~CiyG~~E~d~~cp----~--l~~~~~~~i~lp-GgHH-fd~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 139 PAPVQCIYGEDEDDSLCP----S--LRQPGVEVIALP-GGHH-FDGDYDALAKRILDALK 190 (192)
T ss_pred CCeEEEEEcCCCCCCcCc----c--ccCCCcEEEEcC-CCcC-CCCCHHHHHHHHHHHHh
Confidence 35778899888652 222 1 122567888898 8884 47788999998877654
No 309
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=45.20 E-value=56 Score=26.18 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=38.3
Q ss_pred CccEEEEEeCCCCCCChHH---HHHHHHhCC-CCeEEEEcCCCCCCCCC-CcHHHHHHHHHHH
Q 024316 208 SVKRVYLVCEEDIGLPKQF---QHWMIQNYP-VNEVMEIKGGDHMAMLS-DPQKLCDCLSQIS 265 (269)
Q Consensus 208 ~~P~l~i~g~~D~~~~~~~---~~~~~~~~~-~~~~~~i~~~gH~~~~e-~p~~~~~~l~~f~ 265 (269)
.+|.++....+|....... ...-.+... ..+++.++ ++|..++. +..++++.|.+.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~-G~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVP-GDHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEES-SETTGHHSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEc-CCCcEecchHHHHHHHHHhccC
Confidence 4677888888888766552 222233333 33688888 89999998 6678888777653
No 310
>PRK04940 hypothetical protein; Provisional
Probab=44.89 E-value=1e+02 Score=24.39 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=50.2
Q ss_pred EEEecCCCCCccc--hHHHH-HHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC---CCCcEEEEEe
Q 024316 12 FVLVHGVNHGAWC--WYKLK-ARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP---AEEKVILVGH 85 (269)
Q Consensus 12 ivlvHG~~~~~~~--w~~~~-~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~---~~~~vilVGH 85 (269)
|+.||||.+|+.+ .+-.. ..+ .-..+++ +++. .+-..-.+.+.+.|+++. ..+++.|||+
T Consensus 2 IlYlHGF~SS~~S~~~Ka~~l~~~-~p~~~~~--~l~~-----------~~P~~a~~~l~~~i~~~~~~~~~~~~~liGS 67 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVLQLQFI-DPDVRLI--SYST-----------LHPKHDMQHLLKEVDKMLQLSDDERPLICGV 67 (180)
T ss_pred EEEeCCCCCCCCccHHHHHhheee-CCCCeEE--ECCC-----------CCHHHHHHHHHHHHHHhhhccCCCCcEEEEe
Confidence 7899999999988 53211 122 1123444 3320 111222234444444321 1157999999
Q ss_pred ChhhHHHHHHhhhCCcccceeEEEeccC
Q 024316 86 SLGGVTLALAADKFPHKISVAVFVTAFM 113 (269)
Q Consensus 86 SmGG~i~~~~a~~~p~~v~~lvli~~~~ 113 (269)
||||.-+..+|.++. + +.|+++|.+
T Consensus 68 SLGGyyA~~La~~~g--~-~aVLiNPAv 92 (180)
T PRK04940 68 GLGGYWAERIGFLCG--I-RQVIFNPNL 92 (180)
T ss_pred ChHHHHHHHHHHHHC--C-CEEEECCCC
Confidence 999999999888865 3 567788653
No 311
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=44.57 E-value=39 Score=28.88 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCceEEEecCCCCCc-----cchHHHHHHHHhCCCeEEEeCC
Q 024316 8 EEKHFVLVHGVNHGA-----WCWYKLKARLVAGGHRVTAVDL 44 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~-----~~w~~~~~~L~~~g~~Via~Dl 44 (269)
+...|.+++|..++- .+.+.+...|.+.||+|+.+|.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 356899999965432 4688899999999999999985
No 312
>PRK06193 hypothetical protein; Provisional
Probab=44.48 E-value=34 Score=27.75 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=32.1
Q ss_pred cchHHhHHHHHHHHHhCC-CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 58 HTFHAYSEPLMEVLASLP-AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 58 ~~~~~~~~~l~~~i~~l~-~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
.+.+.|.+++.++|+.++ ..++++||||.. ....++...++.-...+++.+
T Consensus 135 ~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp---~i~~l~g~~~~~~g~~~~~~~ 186 (206)
T PRK06193 135 ERNALLKAGLRPLLTTPPDPGTNTVLVGHDD---NLEAATGIYPEPEGEAAVFEP 186 (206)
T ss_pred hhHHHHHHHHHHHHhhCCCCCCeEEEEeCch---HHHHHhCCCCccCccEEEEEe
Confidence 356677899999999874 345799999994 233444444442222444543
No 313
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=44.37 E-value=1.8e+02 Score=25.87 Aligned_cols=96 Identities=24% Similarity=0.243 Sum_probs=48.4
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCC-------CCCCCCCcccccccchHHhHHHHH------HHHHhC
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDL-------AASGINMKRIEDVHTFHAYSEPLM------EVLASL 74 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl-------~G~G~S~~~~~~~~~~~~~~~~l~------~~i~~l 74 (269)
+++||+.-..+..+. .....|...|| +|+.+|= .|.-....+.-....++.|+..+. +.-+.+
T Consensus 57 ~~~IvvyC~~G~rs~---~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s~~~~~~y~r~i~l~~~g~~~q~~l 133 (376)
T PRK08762 57 DREIVLICASGTRSA---HAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLTDEQDERYSRHLRLPEVGEEGQRRL 133 (376)
T ss_pred CCeEEEEcCCCcHHH---HHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCCHHHHHHHHHhcchhhcCHHHHHHH
Confidence 556666654443332 23445667798 5776541 111101111111123455655532 011234
Q ss_pred CCCCcEEEEEeC-hhhHHHHHHhhhCCcccceeEEEec
Q 024316 75 PAEEKVILVGHS-LGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 75 ~~~~~vilVGHS-mGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
...+|.|||-. +|+.++..++.. -|..+++++.
T Consensus 134 -~~~~VlvvG~GG~Gs~ia~~La~~---Gvg~i~lvD~ 167 (376)
T PRK08762 134 -LEARVLLIGAGGLGSPAALYLAAA---GVGTLGIVDH 167 (376)
T ss_pred -hcCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeC
Confidence 34689999985 455555555433 4778888885
No 314
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=44.34 E-value=15 Score=33.13 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCccccee
Q 024316 63 YSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVA 106 (269)
Q Consensus 63 ~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~l 106 (269)
.+..+..+.++ +..+-+++|-|.|+.+++.++.+.++.+..+
T Consensus 82 h~GVlkaL~e~--gllp~iI~GtSAGAivaalla~~t~~el~~~ 123 (407)
T cd07232 82 HFGVVKALLDA--DLLPNVISGTSGGSLVAALLCTRTDEELKQL 123 (407)
T ss_pred HHHHHHHHHhC--CCCCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 34455555553 3457779999999999999988767666555
No 315
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=44.18 E-value=24 Score=29.10 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=13.9
Q ss_pred HHHHHhCCCeEEEeCC
Q 024316 29 KARLVAGGHRVTAVDL 44 (269)
Q Consensus 29 ~~~L~~~g~~Via~Dl 44 (269)
+.+|+++||+|+++|+
T Consensus 58 ~~~LA~~G~~V~GvDl 73 (226)
T PRK13256 58 MLFFLSKGVKVIGIEL 73 (226)
T ss_pred HHHHHhCCCcEEEEec
Confidence 5568889999999998
No 316
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]
Probab=44.10 E-value=21 Score=31.90 Aligned_cols=43 Identities=37% Similarity=0.452 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcccceeEEE
Q 024316 65 EPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFV 109 (269)
Q Consensus 65 ~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli 109 (269)
++|...+..+ ...+.||||||+=-=.-++=. .+|.-|+.-++.
T Consensus 281 ~dvq~~l~~~-~~~~TILVGHSLenDL~aLKl-~H~~ViDTa~lf 323 (380)
T KOG2248|consen 281 EDVQKELLEL-ISKNTILVGHSLENDLKALKL-DHPSVIDTAVLF 323 (380)
T ss_pred HHHHHHHHhh-cCcCcEEEeechhhHHHHHhh-hCCceeeeeEEE
Confidence 4555555554 446899999999865221111 345555544333
No 317
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=44.00 E-value=63 Score=26.29 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEEEeChhhH-HHHHHhhhCCcccceeEEE
Q 024316 61 HAYSEPLMEVLASLPAEEKVILVGHSLGGV-TLALAADKFPHKISVAVFV 109 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~~~~~vilVGHSmGG~-i~~~~a~~~p~~v~~lvli 109 (269)
.+-.+.|+..|.++...+++++.|-+-||. ++...|....-..+-|++=
T Consensus 8 ~dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVr 57 (220)
T COG1926 8 TDAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVR 57 (220)
T ss_pred HHHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEe
Confidence 344567777787774347899999999999 7777787776666655543
No 318
>PRK04435 hypothetical protein; Provisional
Probab=43.81 E-value=1.1e+02 Score=23.33 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=51.8
Q ss_pred CCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCC--CCCCCCCccc-ccccchHHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDL--AASGINMKRI-EDVHTFHAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl--~G~G~S~~~~-~~~~~~~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
.|..+-|.-.....+..+..++..+++.|-++..+.. +..|...... -...+.+...++|.+-|+++++..++-++|
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3566666666666778899999999999999998865 2223211111 022244556677777777777677898888
Q ss_pred e
Q 024316 85 H 85 (269)
Q Consensus 85 H 85 (269)
.
T Consensus 146 ~ 146 (147)
T PRK04435 146 M 146 (147)
T ss_pred c
Confidence 5
No 319
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=42.81 E-value=61 Score=25.75 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=35.9
Q ss_pred CceEEEecCCCCCccch---HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHh
Q 024316 9 EKHFVLVHGVNHGAWCW---YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS 73 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w---~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~ 73 (269)
.+|++++||.....--. ..+...|.+.|.++-..-+||-|+.-... . .-.++.+.+.++++.
T Consensus 144 ~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~--~-~~~~~~~~~~~f~~~ 208 (213)
T PF00326_consen 144 KPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNP--E-NRRDWYERILDFFDK 208 (213)
T ss_dssp GSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSH--H-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCc--h-hHHHHHHHHHHHHHH
Confidence 57999999986543322 34566777778766666666544321111 1 223566666677664
No 320
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=42.73 E-value=31 Score=29.91 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.1
Q ss_pred EEEEeChhhHHHHHHhhhC
Q 024316 81 ILVGHSLGGVTLALAADKF 99 (269)
Q Consensus 81 ilVGHSmGG~i~~~~a~~~ 99 (269)
.+.|-|+||+++..++..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 6799999999999887654
No 321
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=42.25 E-value=41 Score=26.16 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=22.4
Q ss_pred HHHHhCCCCCcEEEEEeChhhHHHHHHhhhCC
Q 024316 69 EVLASLPAEEKVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 69 ~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p 100 (269)
+.+++. +...-.++|-|.|+.++..++....
T Consensus 20 ~~L~e~-g~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 20 RALEEE-GIEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHHHC-CCCeeEEEEeCHHHHHHHHHHcCCC
Confidence 344444 3456889999999999888876543
No 322
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=42.17 E-value=78 Score=28.06 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=39.6
Q ss_pred eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH-HHHHHhhhC
Q 024316 38 RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV-TLALAADKF 99 (269)
Q Consensus 38 ~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~-i~~~~a~~~ 99 (269)
+||..|-++. ..|..+.|++.|.+++++.. ..++|+|+|.=|- ++..+|.+.
T Consensus 88 ~V~~~~~~~l--------~~y~~e~~a~al~~li~~~~--P~~vL~~~T~~GrdlApRlAarL 140 (356)
T PLN00022 88 EVLVADSDKL--------THPLAEPWAKLVVLAQQKGG--YSHILAASTSFGKNVLPRAAALL 140 (356)
T ss_pred EEEEecCchh--------cccChHHHHHHHHHHHHhcC--CCEEEECCCCchhHHHHHHHHHh
Confidence 7777775532 34678999999999999863 5799999998887 677766553
No 323
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.85 E-value=1.4e+02 Score=27.28 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=48.4
Q ss_pred HHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcc--ccee
Q 024316 29 KARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHK--ISVA 106 (269)
Q Consensus 29 ~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~--v~~l 106 (269)
++.+...+|+|+.+|-.|. .. -=+++.+++.++-+.+.. ..+++|--||=|--+...|..+.+. |.++
T Consensus 175 l~~ak~~~~DvvIvDTAGR-----l~----ide~Lm~El~~Ik~~~~P-~E~llVvDam~GQdA~~~A~aF~e~l~itGv 244 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGR-----LH----IDEELMDELKEIKEVINP-DETLLVVDAMIGQDAVNTAKAFNEALGITGV 244 (451)
T ss_pred HHHHHHcCCCEEEEeCCCc-----cc----ccHHHHHHHHHHHhhcCC-CeEEEEEecccchHHHHHHHHHhhhcCCceE
Confidence 4455566788888887652 11 125677777777666622 4699999999999777777777665 5566
Q ss_pred EEE
Q 024316 107 VFV 109 (269)
Q Consensus 107 vli 109 (269)
|+-
T Consensus 245 IlT 247 (451)
T COG0541 245 ILT 247 (451)
T ss_pred EEE
Confidence 654
No 324
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.80 E-value=1.9e+02 Score=25.62 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=55.2
Q ss_pred ceEEEecCCCCCccch-HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC-CCCcEEEEEeCh
Q 024316 10 KHFVLVHGVNHGAWCW-YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP-AEEKVILVGHSL 87 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w-~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~-~~~~vilVGHSm 87 (269)
++||++=||...-..| .+.+.-..+.||.|+-+-.|-+-..-.......++.....-+.+++.... ...+.+.--.||
T Consensus 39 k~Iv~~~gWag~~~r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~~~~~pi~fh~FS~ 118 (350)
T KOG2521|consen 39 KPIVVLLGWAGAIDRNLMKYSKIYQDKGYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYNSDPCPIIFHVFSG 118 (350)
T ss_pred ccEEEEeeeccccchhHHHHHHHHhcCCceEEEecCcccccccccccccchhhHHHHHHHHHhhhccCCcCceEEEEecC
Confidence 4999999997777666 55666677889999988887653221111122356666677777777652 123677778999
Q ss_pred hhHH
Q 024316 88 GGVT 91 (269)
Q Consensus 88 GG~i 91 (269)
||..
T Consensus 119 ng~~ 122 (350)
T KOG2521|consen 119 NGVR 122 (350)
T ss_pred Ccee
Confidence 9983
No 325
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=41.41 E-value=48 Score=25.77 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhCCC-CCcEEEEEe--ChhhHHHHHHhh-hCCcccc--eeEEEe
Q 024316 63 YSEPLMEVLASLPA-EEKVILVGH--SLGGVTLALAAD-KFPHKIS--VAVFVT 110 (269)
Q Consensus 63 ~~~~l~~~i~~l~~-~~~vilVGH--SmGG~i~~~~a~-~~p~~v~--~lvli~ 110 (269)
-+..+.+.|+++.. ...+.|||| +||-++...+.. +.+..+. +++.++
T Consensus 86 d~~~~l~~l~~~~d~v~~vllVgH~P~l~~l~~~L~~~~~~~~~fptsgia~l~ 139 (163)
T COG2062 86 DPGTVLDYLEALGDGVGSVLLVGHNPLLEELALLLAGGARLPVKFPTSGIAVLE 139 (163)
T ss_pred CHHHHHHHHHHhcccCceEEEECCCccHHHHHHHHccccccccCCCcccEEEEE
Confidence 33445555555532 368999999 787775555443 3444433 444443
No 326
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=41.12 E-value=16 Score=32.23 Aligned_cols=51 Identities=14% Similarity=-0.012 Sum_probs=39.4
Q ss_pred CCccEEEEEeCCCCCCChHH-HHHHHHhCCCC--eEEEEcCCCCCCCCCCcHHH
Q 024316 207 GSVKRVYLVCEEDIGLPKQF-QHWMIQNYPVN--EVMEIKGGDHMAMLSDPQKL 257 (269)
Q Consensus 207 ~~~P~l~i~g~~D~~~~~~~-~~~~~~~~~~~--~~~~i~~~gH~~~~e~p~~~ 257 (269)
.++|++++.|..|.+.|+.. +.+....+++. .+..++++.|.-++|...++
T Consensus 250 v~~P~~~~a~s~D~~aP~~~~~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 250 VTDPVLLAAGSADGFAPPVTEQIRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred eecceeeecccccccCCcccccccccccCCcchhheeecCCCccccccccCccc
Confidence 36899999999999877654 34445566665 46778999999999988775
No 327
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=40.94 E-value=2.4e+02 Score=24.47 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=58.9
Q ss_pred CCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH-----HHH
Q 024316 19 NHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV-----TLA 93 (269)
Q Consensus 19 ~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~-----i~~ 93 (269)
++.+.--+...+.|-. -+.|+.-|+--.-.-+- .....++++|.+-+++.|+.++. ++++++-.-=+. ++.
T Consensus 114 GH~aTLLR~TV~alLp-~~~vyitDW~dAr~Vp~-~~G~FdldDYIdyvie~~~~~Gp--~~hv~aVCQP~vPvLAAisL 189 (415)
T COG4553 114 GHYATLLRGTVEALLP-YHDVYITDWVDARMVPL-EAGHFDLDDYIDYVIEMINFLGP--DAHVMAVCQPTVPVLAAISL 189 (415)
T ss_pred ccHHHHHHHHHHHhcc-ccceeEeeccccceeec-ccCCccHHHHHHHHHHHHHHhCC--CCcEEEEecCCchHHHHHHH
Confidence 4555556777777754 47899999864322222 22457999999999999999864 455555443332 333
Q ss_pred HHhhhCCcccceeEEEeccCCC
Q 024316 94 LAADKFPHKISVAVFVTAFMPD 115 (269)
Q Consensus 94 ~~a~~~p~~v~~lvli~~~~~~ 115 (269)
+.+...|..=+.++++.++...
T Consensus 190 M~~~~~p~~PssMtlmGgPIDa 211 (415)
T COG4553 190 MEEDGDPNVPSSMTLMGGPIDA 211 (415)
T ss_pred HHhcCCCCCCceeeeecCcccc
Confidence 3344556666788888875443
No 328
>COG3933 Transcriptional antiterminator [Transcription]
Probab=40.85 E-value=2.4e+02 Score=25.83 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=51.6
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhh
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGG 89 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG 89 (269)
+.||..||.. ++.+--.++..|-.. =-++++|+| . ..+..+..+.+.+.+++.. -.+=.++==+||.
T Consensus 110 ~vIiiAHG~s-TASSmaevanrLL~~-~~~~aiDMP--------L--dvsp~~vle~l~e~~k~~~-~~~GlllLVDMGS 176 (470)
T COG3933 110 KVIIIAHGYS-TASSMAEVANRLLGE-EIFIAIDMP--------L--DVSPSDVLEKLKEYLKERD-YRSGLLLLVDMGS 176 (470)
T ss_pred eEEEEecCcc-hHHHHHHHHHHHhhc-cceeeecCC--------C--cCCHHHHHHHHHHHHHhcC-ccCceEEEEecch
Confidence 4899999976 666677888888554 368999998 2 3488899999999999873 2343445568999
Q ss_pred HH
Q 024316 90 VT 91 (269)
Q Consensus 90 ~i 91 (269)
..
T Consensus 177 L~ 178 (470)
T COG3933 177 LT 178 (470)
T ss_pred HH
Confidence 84
No 329
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.63 E-value=55 Score=27.92 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=35.7
Q ss_pred hHHhHHHHHHHHHhCCCC--CcEEEEEeChhhHHHHHH---hhhCCcccceeEEEecc
Q 024316 60 FHAYSEPLMEVLASLPAE--EKVILVGHSLGGVTLALA---ADKFPHKISVAVFVTAF 112 (269)
Q Consensus 60 ~~~~~~~l~~~i~~l~~~--~~vilVGHSmGG~i~~~~---a~~~p~~v~~lvli~~~ 112 (269)
-..+.+.|.+.+.+++.+ .++.|.|-|+|+.-+..+ +...-+++++.+.+.++
T Consensus 89 ~~aL~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP 146 (289)
T PF10081_consen 89 ARALFEAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPP 146 (289)
T ss_pred HHHHHHHHHHHHHhCCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCC
Confidence 345666777777777533 369999999999944332 22334678898888753
No 330
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=40.61 E-value=2e+02 Score=23.51 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=29.2
Q ss_pred CccccCCCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCC
Q 024316 1 MEEVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA 46 (269)
Q Consensus 1 ~~~~~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G 46 (269)
|-.+..+.++ ++||-|.. +..-..++..|.+.|++|+..|...
T Consensus 1 ~~~~~~l~~k-~vlItG~s--~gIG~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 1 MQDWLNLQGK-IIIVTGGS--SGIGLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred CcccccCCCC-EEEEeCCC--ChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3444445454 45677643 4555678888988999999998754
No 331
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=40.57 E-value=22 Score=30.84 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcccc
Q 024316 63 YSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKIS 104 (269)
Q Consensus 63 ~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~ 104 (269)
.+..+..+.+ . +..+-++.|-|.|+.+++.++...++.+.
T Consensus 83 h~GVlkaL~e-~-gl~p~~i~GsSaGAivaa~~~~~t~~El~ 122 (323)
T cd07231 83 HVGVVRTLVE-H-QLLPRVIAGSSVGSIVCAIIATRTDEELQ 122 (323)
T ss_pred HHHHHHHHHH-c-CCCCCEEEEECHHHHHHHHHHcCCHHHHH
Confidence 3344444444 3 34567799999999999888766554443
No 332
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=39.68 E-value=31 Score=29.87 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=19.9
Q ss_pred HHHHhCC-CCCcEEEEEeChhhHHHHHHhh
Q 024316 69 EVLASLP-AEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 69 ~~i~~l~-~~~~vilVGHSmGG~i~~~~a~ 97 (269)
+.+++.+ ..++..+.|||+|=+.+..++.
T Consensus 75 ~~l~~~~~~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 75 RVLAEQGLGVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred HHHHHhcCCCCCceeecccHhHHHHHHHcc
Confidence 3344432 3567899999999997766553
No 333
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=39.29 E-value=70 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.6
Q ss_pred EEEEeChhhHHHHHHhh
Q 024316 81 ILVGHSLGGVTLALAAD 97 (269)
Q Consensus 81 ilVGHSmGG~i~~~~a~ 97 (269)
++.|-|.||.++..++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 47999999999988864
No 334
>PRK13753 dihydropteroate synthase; Provisional
Probab=39.26 E-value=54 Score=27.95 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=26.0
Q ss_pred EEeCCCCCCCCC-cccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHH
Q 024316 40 TAVDLAASGINM-KRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLAL 94 (269)
Q Consensus 40 ia~Dl~G~G~S~-~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~ 94 (269)
|.+| ||+|... +... .++ .+...+.++...+ .-++|||+|==+.+...
T Consensus 170 IilD-PGiGF~k~k~~~--~n~-~ll~~l~~l~~~~---g~PvLvg~SRKsfig~~ 218 (279)
T PRK13753 170 LILD-PGMGFFLSPAPE--TSL-HVLSNLQKLKSAL---GLPLLVSVSRKSFLGAT 218 (279)
T ss_pred EEEe-CCCCCCCCCChH--HHH-HHHHhHHHHHHhC---CCceEEEccHhHHHHHH
Confidence 7788 6877621 1211 122 2333343332234 46899999988776544
No 335
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=39.03 E-value=1.4e+02 Score=25.71 Aligned_cols=70 Identities=11% Similarity=0.225 Sum_probs=41.2
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCC--------CCCCC---cccc--cc-cchHHhHHHHHHHHHhCC
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA--------SGINM---KRIE--DV-HTFHAYSEPLMEVLASLP 75 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G--------~G~S~---~~~~--~~-~~~~~~~~~l~~~i~~l~ 75 (269)
|-|+|.-|.| ..++.|...||+||.+|+.- -|..- ...+ .. .+.+.+.+.+.+.++..+
T Consensus 253 Pmi~fakG~g-------~~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG 325 (359)
T KOG2872|consen 253 PMILFAKGSG-------GALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFG 325 (359)
T ss_pred ceEEEEcCcc-------hHHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhC
Confidence 4678888765 35778999999999999742 11110 0000 11 155666677777777764
Q ss_pred CCCcEEEEEeC
Q 024316 76 AEEKVILVGHS 86 (269)
Q Consensus 76 ~~~~vilVGHS 86 (269)
..+-++=.||-
T Consensus 326 ~~ryI~NLGHG 336 (359)
T KOG2872|consen 326 KSRYIANLGHG 336 (359)
T ss_pred ccceEEecCCC
Confidence 33335555663
No 336
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=38.50 E-value=41 Score=28.52 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=46.1
Q ss_pred eEEEecCCCCCccc--hHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeCh-
Q 024316 11 HFVLVHGVNHGAWC--WYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSL- 87 (269)
Q Consensus 11 ~ivlvHG~~~~~~~--w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSm- 87 (269)
|+|+|-|.++++.+ .+.+...|.+.++.|+.++--..+.....-.+.......-..+...++.. ..++.++|==|+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~n 80 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNN 80 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCc
Confidence 79999999988864 46788888888899988875433311111001223344445555555543 123344454443
Q ss_pred --hhH--HHHHHhhhCCcccceeEEEec
Q 024316 88 --GGV--TLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 88 --GG~--i~~~~a~~~p~~v~~lvli~~ 111 (269)
=|+ -..+.|..+.-.. ..|++.+
T Consensus 81 YiKg~RYelyclAr~~~~~~-c~i~~~~ 107 (270)
T PF08433_consen 81 YIKGMRYELYCLARAYGTTF-CVIYCDC 107 (270)
T ss_dssp -SHHHHHHHHHHHHHTT-EE-EEEEEE-
T ss_pred hHHHHHHHHHHHHHHcCCCE-EEEEECC
Confidence 344 2444454432222 4555554
No 337
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=37.35 E-value=98 Score=24.78 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=28.1
Q ss_pred CceEEEecCCCCCcc---chHHHHHHHHhCCCeEEEeCCCCCCCC
Q 024316 9 EKHFVLVHGVNHGAW---CWYKLKARLVAGGHRVTAVDLAASGIN 50 (269)
Q Consensus 9 g~~ivlvHG~~~~~~---~w~~~~~~L~~~g~~Via~Dl~G~G~S 50 (269)
..||+++||-...-- .-+...+.|++.|.+|-.-..+|-|++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~ 199 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHE 199 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Confidence 569999999876552 236678888888888887777765554
No 338
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=37.06 E-value=25 Score=30.81 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=14.3
Q ss_pred EEEEEeChhhHHHHHHhh
Q 024316 80 VILVGHSLGGVTLALAAD 97 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~ 97 (269)
..++|||+|=+.+.++|.
T Consensus 126 ~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAG 143 (343)
T ss_pred CeeeeccHHHHHHHHHhC
Confidence 467999999997777663
No 339
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=36.94 E-value=67 Score=29.49 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=37.1
Q ss_pred eEEEeCCC-CCCCCCcc------cccccchHHhHHHHHHHHHhCC--CCCcEEEEEeChhhHHHHHHh
Q 024316 38 RVTAVDLA-ASGINMKR------IEDVHTFHAYSEPLMEVLASLP--AEEKVILVGHSLGGVTLALAA 96 (269)
Q Consensus 38 ~Via~Dl~-G~G~S~~~------~~~~~~~~~~~~~l~~~i~~l~--~~~~vilVGHSmGG~i~~~~a 96 (269)
+++=+|.| |-|-|=.. .++..+-.+.-+.|.++.++.+ ...+..|.|-|++|..+-.+|
T Consensus 119 NiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La 186 (454)
T KOG1282|consen 119 NILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALA 186 (454)
T ss_pred cEEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHH
Confidence 67888998 77766321 1222344455556666666554 235899999999998544444
No 340
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=36.82 E-value=62 Score=27.10 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=23.6
Q ss_pred CceEEEecCCCCCc----------------cchHHHHHHHHhCCC--eEEEeCCCCCCCC
Q 024316 9 EKHFVLVHGVNHGA----------------WCWYKLKARLVAGGH--RVTAVDLAASGIN 50 (269)
Q Consensus 9 g~~ivlvHG~~~~~----------------~~w~~~~~~L~~~g~--~Via~Dl~G~G~S 50 (269)
+.++|++|--+.+. ....+.+..+.+.|. .=|.+| ||.|..
T Consensus 120 ~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilD-Pg~g~~ 178 (258)
T cd00423 120 GAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILD-PGIGFG 178 (258)
T ss_pred CCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEe-CCCCcc
Confidence 56888888332211 234555666666673 236777 677643
No 341
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=36.44 E-value=87 Score=24.76 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=22.2
Q ss_pred eEEEeCCCCCCCCCccccc---cc--c-hHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 38 RVTAVDLAASGINMKRIED---VH--T-FHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 38 ~Via~Dl~G~G~S~~~~~~---~~--~-~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
++|.+| ||||.++.-... .. . .-+++..|.+.+++.+ -+|++.
T Consensus 1 k~I~iD-pGHGg~d~GA~~~~g~~E~~~~l~ia~~l~~~L~~~G--~~V~lt 49 (189)
T TIGR02883 1 KIIVID-PGHGGIDGGAVGKDGTLEKDITLEIALKLKDYLQEQG--ALVVMT 49 (189)
T ss_pred CEEEEe-CCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHhCC--CEEEEE
Confidence 367788 899976521111 10 1 1145556666666652 355544
No 342
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=36.24 E-value=1.4e+02 Score=25.00 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=38.0
Q ss_pred CceEEEec--CCCCCc--------------cchHHHHHHHHhCCCe--EEEeCCCCCCCCCcccccccchHHhHHHHHHH
Q 024316 9 EKHFVLVH--GVNHGA--------------WCWYKLKARLVAGGHR--VTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70 (269)
Q Consensus 9 g~~ivlvH--G~~~~~--------------~~w~~~~~~L~~~g~~--Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~ 70 (269)
|.++|++| |.+.+. ....+.++.+.+.|.. =|.+|- |+|.... .+..-.+.+-
T Consensus 120 ~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DP-g~gf~ks--------~~~~~~~l~~ 190 (257)
T cd00739 120 GAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDP-GIGFGKT--------PEHNLELLRR 190 (257)
T ss_pred CCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEec-CCCcccC--------HHHHHHHHHH
Confidence 56888898 443331 1244555666667763 356674 5553321 1222233333
Q ss_pred HHhCCCCCcEEEEEeChhhHH
Q 024316 71 LASLPAEEKVILVGHSLGGVT 91 (269)
Q Consensus 71 i~~l~~~~~vilVGHSmGG~i 91 (269)
++.+...+-++++|+|==..+
T Consensus 191 i~~l~~~~~pil~G~SrkSfi 211 (257)
T cd00739 191 LDELKQLGLPVLVGASRKSFI 211 (257)
T ss_pred HHHHHhCCCcEEEEecccHHH
Confidence 333311245889999755553
No 343
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=35.62 E-value=2.7e+02 Score=23.60 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=23.2
Q ss_pred EEEecCCCCCc--cchHHHHHHHHhCCCeEEEeCCCC
Q 024316 12 FVLVHGVNHGA--WCWYKLKARLVAGGHRVTAVDLAA 46 (269)
Q Consensus 12 ivlvHG~~~~~--~~w~~~~~~L~~~g~~Via~Dl~G 46 (269)
+++++|.+.++ ..-..+++.|.+.|++|..+...+
T Consensus 3 l~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 3 LYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 34455554333 345678899988899998776554
No 344
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=35.16 E-value=57 Score=27.26 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=18.5
Q ss_pred cEEEEEeChhhHHHHHHhhhCCc
Q 024316 79 KVILVGHSLGGVTLALAADKFPH 101 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p~ 101 (269)
.=.++|-|.|+.++..++.....
T Consensus 28 fd~i~GtSaGAi~a~~~~~g~~~ 50 (266)
T cd07208 28 FDLVIGVSAGALNAASYLSGQRG 50 (266)
T ss_pred CCEEEEECHHHHhHHHHHhCCcc
Confidence 45889999999998888766543
No 345
>PRK08263 short chain dehydrogenase; Provisional
Probab=34.64 E-value=2e+02 Score=23.84 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=24.2
Q ss_pred EEEecCCCCCccchHHHHHHHHhCCCeEEEeCCC
Q 024316 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 12 ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~ 45 (269)
.+||.|. ++..-+.++..|.+.|++|++.+..
T Consensus 5 ~vlItGa--sg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 5 VWFITGA--SRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred EEEEeCC--CChHHHHHHHHHHHCCCEEEEEECC
Confidence 5677763 4556677888888889999998864
No 346
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins. This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clus
Probab=34.60 E-value=38 Score=25.67 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=23.5
Q ss_pred CCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 47 SGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 47 ~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
||-++....+..++.+...++.++++ .-+||||..+
T Consensus 51 hGIt~~~v~~a~~~~~~~~~l~~~l~------~~vlVgHn~~ 86 (152)
T cd06144 51 SGIRPEHLKDAPDFEEVQKKVAELLK------GRILVGHALK 86 (152)
T ss_pred CCCCHHHHcCCCCHHHHHHHHHHHhC------CCEEEEcCcH
Confidence 66665443345677777777776652 2467999975
No 347
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=34.44 E-value=58 Score=26.55 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=19.2
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCC
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDL 44 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl 44 (269)
+..+++.-|.+ .-+..|++.||+|+++|.
T Consensus 39 ~rvL~~gCG~G-------~da~~LA~~G~~V~avD~ 67 (218)
T PRK13255 39 SRVLVPLCGKS-------LDMLWLAEQGHEVLGVEL 67 (218)
T ss_pred CeEEEeCCCCh-------HhHHHHHhCCCeEEEEcc
Confidence 34445544544 235567788999999997
No 348
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=34.25 E-value=23 Score=27.34 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCCCCCCCCc---ccccccchHHhHHHH----HHHHHhCC---CCCcEEEEEeChhhH
Q 024316 43 DLAASGINMK---RIEDVHTFHAYSEPL----MEVLASLP---AEEKVILVGHSLGGV 90 (269)
Q Consensus 43 Dl~G~G~S~~---~~~~~~~~~~~~~~l----~~~i~~l~---~~~~vilVGHSmGG~ 90 (269)
-+-|||.... .. ..++.++++..| ..+-+..+ .-+++.|||.||+..
T Consensus 60 ~lVGHG~~~~~~~~l-~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 60 QLVGHGRDEFNNQTL-AGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEE--EESSTSSSEE-TTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred EEEEeCCCcCCCcee-CCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 3457886621 11 235777777777 33333221 124799999999987
No 349
>PLN02748 tRNA dimethylallyltransferase
Probab=34.07 E-value=1.4e+02 Score=27.60 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=45.2
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhC-CCeEEEeCC----CC------------------CCCCCcccccccchHHhHHH
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAG-GHRVTAVDL----AA------------------SGINMKRIEDVHTFHAYSEP 66 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~-g~~Via~Dl----~G------------------~G~S~~~~~~~~~~~~~~~~ 66 (269)
+.||+|-|-..++-+ .++-.|+.. +..||..|- +| |..+-..++..|+..+|.++
T Consensus 22 ~~~i~i~GptgsGKs--~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~ 99 (468)
T PLN02748 22 AKVVVVMGPTGSGKS--KLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDH 99 (468)
T ss_pred CCEEEEECCCCCCHH--HHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHH
Confidence 468888887655543 233334332 346777772 22 22111223356899999998
Q ss_pred HHHHHHhC-CCCCcEEEEEeC
Q 024316 67 LMEVLASL-PAEEKVILVGHS 86 (269)
Q Consensus 67 l~~~i~~l-~~~~~vilVGHS 86 (269)
....|+.+ ..++-+||||=|
T Consensus 100 A~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 100 AVPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred HHHHHHHHHhcCCCeEEEcCh
Confidence 88888875 234679999854
No 350
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=33.42 E-value=78 Score=24.45 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhC
Q 024316 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKF 99 (269)
Q Consensus 66 ~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~ 99 (269)
-+.+.+++. +...-+++|-|.|+.++..++...
T Consensus 17 Gvl~~L~~~-~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 17 GVLKALEEA-GIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHHHHc-CCCeeEEEEECHHHHHHHHHHcCC
Confidence 344444544 335678999999999988887543
No 351
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=33.33 E-value=64 Score=22.87 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=33.1
Q ss_pred EEEecCCCCCccchHHHHHHHHhC-CCeEEEeCC--CCCCCCCcccccccchHHhHHHHHHHHHhC
Q 024316 12 FVLVHGVNHGAWCWYKLKARLVAG-GHRVTAVDL--AASGINMKRIEDVHTFHAYSEPLMEVLASL 74 (269)
Q Consensus 12 ivlvHG~~~~~~~w~~~~~~L~~~-g~~Via~Dl--~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l 74 (269)
||+|-|.++++.+- ++..|++. |+.++-.|- +-.+......+.........+.+.+.++.+
T Consensus 1 vI~I~G~~gsGKST--~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (121)
T PF13207_consen 1 VIIISGPPGSGKST--LAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQL 64 (121)
T ss_dssp EEEEEESTTSSHHH--HHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHH--HHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhh
Confidence 68899997777543 34445443 899998887 544444222111111334444455555443
No 352
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins. This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T.
Probab=33.26 E-value=43 Score=25.40 Aligned_cols=37 Identities=38% Similarity=0.621 Sum_probs=24.8
Q ss_pred CCCCCcccccc-cchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 47 SGINMKRIEDV-HTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 47 ~G~S~~~~~~~-~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
||-++....+. .++++....+.++++ +..+||||+..
T Consensus 48 tGIt~~~l~~a~~~~~~v~~~~~~fl~-----~~~vlVgHn~~ 85 (150)
T cd06145 48 SGITEEMLENVTTTLEDVQKKLLSLIS-----PDTILVGHSLE 85 (150)
T ss_pred CCCCHHHhccCCCCHHHHHHHHHHHhC-----CCCEEEEcChH
Confidence 77775443344 378887777777763 24689999864
No 353
>PF01341 Glyco_hydro_6: Glycosyl hydrolases family 6; InterPro: IPR016288 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The 1,4-beta cellobiohydrolase family plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: Endoglucanases, which cut internal beta-1,4-glucosidic bonds; Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; and Beta-1,4-glucosidases, which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030245 cellulose catabolic process; PDB: 2BOF_X 2BOG_X 1TML_A 3RPT_A 2BOD_X 2BOE_X 1DYS_B 3VOI_A 3VOG_A 3VOJ_A ....
Probab=33.15 E-value=72 Score=27.51 Aligned_cols=45 Identities=7% Similarity=0.338 Sum_probs=27.0
Q ss_pred eEEEeCCCCC----CCCCc-ccccccchHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 38 RVTAVDLAAS----GINMK-RIEDVHTFHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 38 ~Via~Dl~G~----G~S~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
-++++++|+. +.|.. ...+..++.+|++.+.+.|++.+ +.++++|
T Consensus 64 vlVvY~lP~RDC~a~~S~Geg~~~~~~Yk~wId~ia~~i~~~g-~~~~vvI 113 (298)
T PF01341_consen 64 VLVVYNLPNRDCAAGASAGEGADSLASYKEWIDPIAAGIKKYG-DRRAVVI 113 (298)
T ss_dssp EEEE---TTCSTTSSSTSSSGGTHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred EEEEeccCCCCccccccCCCCCCchhHHHHHHHHHHHHHHhcC-CCceEEE
Confidence 4568899973 24544 33344577788899999997774 4565555
No 354
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=32.98 E-value=1.2e+02 Score=29.00 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=27.8
Q ss_pred CceEEEecCCCCCccch----HHHHHHHHhCCCeEEEeCCCC--CCCCC
Q 024316 9 EKHFVLVHGVNHGAWCW----YKLKARLVAGGHRVTAVDLAA--SGINM 51 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w----~~~~~~L~~~g~~Via~Dl~G--~G~S~ 51 (269)
..|++||||.- ...++ ..+...|...|..|-..=+|+ |+.+.
T Consensus 551 ~~P~LliHG~~-D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~ 598 (620)
T COG1506 551 KTPLLLIHGEE-DDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSR 598 (620)
T ss_pred CCCEEEEeecC-CccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCC
Confidence 46999999975 33333 345667777788776666664 55554
No 355
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=32.93 E-value=1.4e+02 Score=24.88 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=28.2
Q ss_pred ccCCCCceEEEecCCCCCc-cchHHHHHHHHhCCC-eEEEeCCC
Q 024316 4 VVGMEEKHFVLVHGVNHGA-WCWYKLKARLVAGGH-RVTAVDLA 45 (269)
Q Consensus 4 ~~~~~g~~ivlvHG~~~~~-~~w~~~~~~L~~~g~-~Via~Dl~ 45 (269)
..|++.+.|++|.-..... +.++...+.|++.|. .|-.+|++
T Consensus 23 lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 23 RAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred HhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 4566677899999655444 335666777777788 46667764
No 356
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=32.82 E-value=1.8e+02 Score=24.45 Aligned_cols=69 Identities=26% Similarity=0.231 Sum_probs=36.1
Q ss_pred CceEEEec--CCCCCc--------------cchHHHHHHHHhCCCe--EEEeCCCCCCCCCcccccccchHHhHHHHHHH
Q 024316 9 EKHFVLVH--GVNHGA--------------WCWYKLKARLVAGGHR--VTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70 (269)
Q Consensus 9 g~~ivlvH--G~~~~~--------------~~w~~~~~~L~~~g~~--Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~ 70 (269)
|.++|++| |.+.+. ...++.++.+.+.|.. =+.+|- |.|... +. +..-.+.+-
T Consensus 118 ~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDP-g~gf~k-------s~-~~~~~~l~~ 188 (257)
T TIGR01496 118 GVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDP-GIGFGK-------TP-EHNLELLKH 188 (257)
T ss_pred CCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEEC-CCCccc-------CH-HHHHHHHHH
Confidence 57888898 444331 1245555666666762 256675 766442 11 122233333
Q ss_pred HHhCCCCCcEEEEEeC
Q 024316 71 LASLPAEEKVILVGHS 86 (269)
Q Consensus 71 i~~l~~~~~vilVGHS 86 (269)
++.+....-++++|+|
T Consensus 189 i~~l~~~~~p~l~G~S 204 (257)
T TIGR01496 189 LEEFVALGYPLLVGAS 204 (257)
T ss_pred HHHHHhCCCcEEEEec
Confidence 3333112368889996
No 357
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=32.57 E-value=69 Score=26.51 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=34.1
Q ss_pred EEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCC-CCCc--EEEEEeChhhHHHHHH
Q 024316 39 VTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLP-AEEK--VILVGHSLGGVTLALA 95 (269)
Q Consensus 39 Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~-~~~~--vilVGHSmGG~i~~~~ 95 (269)
|..+|-||...+.+. ....+..+...+.+.+.... .+-| -.|+|++|+|......
T Consensus 68 v~lVD~~sQa~grre--EllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~G 125 (234)
T PF06833_consen 68 VALVDVPSQAYGRRE--ELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHG 125 (234)
T ss_pred EEEEeCCccccchHH--HHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHH
Confidence 457799998877543 34566666655555554321 1224 4589999999954443
No 358
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=32.33 E-value=1.1e+02 Score=24.09 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=34.6
Q ss_pred EEEeCCCCCCChHHHHHHHHhCCCCeEEEEcCCCCCCCCCCc---HHHHHHHHHHHHhhC
Q 024316 213 YLVCEEDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMAMLSDP---QKLCDCLSQISLKYA 269 (269)
Q Consensus 213 ~i~g~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p---~~~~~~l~~f~~~~~ 269 (269)
+++..++.-+.....+.+.+--|.+++...+ +-+.+| +++...+.+|+..|.
T Consensus 45 Ll~~~~~~~LA~~v~~Di~~vSP~TeV~~~~-----v~l~dPWDfeeVY~~l~dfa~~Y~ 99 (183)
T PF06956_consen 45 LLHDPRYRALAEQVRRDIAQVSPETEVRLHE-----VELADPWDFEEVYAALHDFARGYP 99 (183)
T ss_pred EEecCcHHHHHHHHHHHHHhcCCCCEEEEEE-----eccCCCccHHHHHHHHHHHHhhCC
Confidence 3455555555555556666666877775544 667888 777788888888763
No 359
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=95 Score=27.19 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=43.1
Q ss_pred eEEEeCCC-CCCCCCc--ccccccchHHhHHHHHHHHHhCC------CCCcEEEEEeChhhHHHHHHh
Q 024316 38 RVTAVDLA-ASGINMK--RIEDVHTFHAYSEPLMEVLASLP------AEEKVILVGHSLGGVTLALAA 96 (269)
Q Consensus 38 ~Via~Dl~-G~G~S~~--~~~~~~~~~~~~~~l~~~i~~l~------~~~~vilVGHSmGG~i~~~~a 96 (269)
+++-+|-| |.|.|=- ...-+.+....+.||.++++.+- .-.|..++..|+||=++...+
T Consensus 73 dllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~a 140 (414)
T KOG1283|consen 73 DLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFA 140 (414)
T ss_pred cEEEecCCCcCceeeecCcccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhh
Confidence 67888888 8887732 21123477899999999998651 224899999999999776655
No 360
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=31.63 E-value=1.6e+02 Score=26.19 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=46.6
Q ss_pred cCCCCceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCCCCCCCCCcccc--cccchHHhHHHHHHHHHhCCCCCcEE
Q 024316 5 VGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASGINMKRIE--DVHTFHAYSEPLMEVLASLPAEEKVI 81 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl~G~G~S~~~~~--~~~~~~~~~~~l~~~i~~l~~~~~vi 81 (269)
.|+-|+||+|=-|...+.+.|..-++.+.+.|- +++... | |-|.-+.. +..++.. +..+++... -||+
T Consensus 221 ~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e-r--g~s~yp~~~~~~ldl~~-----i~~lk~~~~-~PV~ 291 (360)
T PRK12595 221 AGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCE-R--GIRTYEKATRNTLDISA-----VPILKQETH-LPVM 291 (360)
T ss_pred HHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEEC-C--ccCCCCCCCCCCcCHHH-----HHHHHHHhC-CCEE
Confidence 445589999999999999999999999987775 565554 2 33432211 1112221 222333212 3777
Q ss_pred E-EEeChh
Q 024316 82 L-VGHSLG 88 (269)
Q Consensus 82 l-VGHSmG 88 (269)
+ ..||.|
T Consensus 292 ~d~~Hs~G 299 (360)
T PRK12595 292 VDVTHSTG 299 (360)
T ss_pred EeCCCCCc
Confidence 7 799977
No 361
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=31.59 E-value=1.1e+02 Score=22.90 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=29.4
Q ss_pred ceEEEecCCCCC----ccchHHHHHHHHhCCC---eEEEeCCCC
Q 024316 10 KHFVLVHGVNHG----AWCWYKLKARLVAGGH---RVTAVDLAA 46 (269)
Q Consensus 10 ~~ivlvHG~~~~----~~~w~~~~~~L~~~g~---~Via~Dl~G 46 (269)
-.||+-||++.. +.....+++.|...|| ++++++..|
T Consensus 18 vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSylNIfs~~~~~ 61 (146)
T PF04763_consen 18 VVVVCNHSWPGPESLPPESVSLLIEELEESGYSYLNIFSCSSES 61 (146)
T ss_pred EEEEEeCCcccccCCChHHHHHHHHHHhhcCCceEEEEEEcCCC
Confidence 478888998643 4568889999999998 888888764
No 362
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.47 E-value=2.2e+02 Score=24.96 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=48.3
Q ss_pred cCCCCceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 5 VGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
+++.|+||+|=-|. ++-..|..-++.+.+.|- +|+.+- +.|.-+. +.++.--..+..+++.-. -+|-+.
T Consensus 130 va~~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~Llh----C~s~YP~----~~~~~nL~~i~~lk~~f~-~pVG~S 199 (327)
T TIGR03586 130 VAKTGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLK----CTSSYPA----PLEDANLRTIPDLAERFN-VPVGLS 199 (327)
T ss_pred HHhcCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEe----cCCCCCC----CcccCCHHHHHHHHHHhC-CCEEee
Confidence 45558999999999 578889999999977776 566654 2233221 111111122333443312 467689
Q ss_pred EeChhhHHHHH
Q 024316 84 GHSLGGVTLAL 94 (269)
Q Consensus 84 GHSmGG~i~~~ 94 (269)
.||.|=.++..
T Consensus 200 DHt~G~~~~~a 210 (327)
T TIGR03586 200 DHTLGILAPVA 210 (327)
T ss_pred CCCCchHHHHH
Confidence 99998654333
No 363
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=31.42 E-value=39 Score=30.37 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=27.7
Q ss_pred CCcEEEEEeChhhHHHHHHhhhCCcccceeEE
Q 024316 77 EEKVILVGHSLGGVTLALAADKFPHKISVAVF 108 (269)
Q Consensus 77 ~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvl 108 (269)
..+++++|.+.||.-+-..+.++|++|.++.+
T Consensus 118 ~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i 149 (392)
T PRK14046 118 SERVRVIASARGGMEIEEIAAKEPEAIIQVVV 149 (392)
T ss_pred CCcEEEEEeCCCCCchHHHhhhChhheEEEEc
Confidence 45899999999999888888899999988764
No 364
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=31.38 E-value=63 Score=27.86 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCccc
Q 024316 65 EPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKI 103 (269)
Q Consensus 65 ~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v 103 (269)
..+..+.+ . +..+-+++|-|.|+.++..++.+..+.+
T Consensus 86 Gvl~aL~e-~-~l~~~~i~GtSaGAi~aa~~~~~~~~El 122 (298)
T cd07206 86 GVVKALWE-Q-DLLPRVISGSSAGAIVAALLGTHTDEEL 122 (298)
T ss_pred HHHHHHHH-c-CCCCCEEEEEcHHHHHHHHHHcCCcHHH
Confidence 34444444 3 3356789999999999888876554444
No 365
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=31.18 E-value=1.5e+02 Score=25.73 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=40.5
Q ss_pred HHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCC-cEEEEEeChhhH-HHHHHhhh
Q 024316 30 ARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEE-KVILVGHSLGGV-TLALAADK 98 (269)
Q Consensus 30 ~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~-~vilVGHSmGG~-i~~~~a~~ 98 (269)
+.+...|- +|+..|.+. .. |+.+.|++.|.+++++.. . .++|+|||-=|- ++..+|.+
T Consensus 42 ~~~~~~Gad~V~~~~~~~--------~~-~~~e~~~~al~~~i~~~~--p~~~vl~~~T~~Gr~laprlAa~ 102 (313)
T PRK03363 42 AQAIQLGANHVWKLSGKP--------DD-RMIEDYAGVMADTIRQHG--ADGLVLLPNTRRGKLLAAKLGYR 102 (313)
T ss_pred HHHHhcCCCEEEEecCcc--------cc-cChHHHHHHHHHHHHhhC--CCcEEEEcCCccHHHHHHHHHHH
Confidence 33433343 788877642 12 677999999999998752 3 599999998877 66666655
No 366
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=30.96 E-value=67 Score=26.07 Aligned_cols=16 Identities=50% Similarity=0.663 Sum_probs=13.4
Q ss_pred HHHHHhCCCeEEEeCC
Q 024316 29 KARLVAGGHRVTAVDL 44 (269)
Q Consensus 29 ~~~L~~~g~~Via~Dl 44 (269)
+..|+++||+|+++|.
T Consensus 49 a~~LA~~G~~V~gvD~ 64 (213)
T TIGR03840 49 LAWLAEQGHRVLGVEL 64 (213)
T ss_pred HHHHHhCCCeEEEEeC
Confidence 5567788999999996
No 367
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=30.84 E-value=2e+02 Score=24.43 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=34.2
Q ss_pred ccCCCCceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCC
Q 024316 4 VVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDL 44 (269)
Q Consensus 4 ~~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl 44 (269)
..|.-++||+|--|...+.+.|-.-++++..+|- +||....
T Consensus 147 e~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCER 188 (286)
T COG2876 147 EVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCER 188 (286)
T ss_pred HhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEec
Confidence 4677789999999999999999998998877765 7777653
No 368
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=30.83 E-value=80 Score=18.54 Aligned_cols=33 Identities=24% Similarity=0.133 Sum_probs=22.4
Q ss_pred hCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHH
Q 024316 34 AGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72 (269)
Q Consensus 34 ~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~ 72 (269)
..+|-+..||+||.-. ...|+++....+.+.++
T Consensus 11 ~~~y~~~~pdlpg~~t------~G~t~eea~~~~~eal~ 43 (48)
T PF03681_consen 11 DGGYVAYFPDLPGCFT------QGDTLEEALENAKEALE 43 (48)
T ss_dssp SSSEEEEETTCCTCEE------EESSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCccChhh------cCCCHHHHHHHHHHHHH
Confidence 4578999999998531 12366777766666665
No 369
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=30.32 E-value=89 Score=25.24 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=27.1
Q ss_pred CCCceEEEecCCCCCccc-hHHHHHHHHhC-CCeEEEeCCC
Q 024316 7 MEEKHFVLVHGVNHGAWC-WYKLKARLVAG-GHRVTAVDLA 45 (269)
Q Consensus 7 ~~g~~ivlvHG~~~~~~~-w~~~~~~L~~~-g~~Via~Dl~ 45 (269)
+.++.|++|.=....... .+.+...|.+. |+++..++..
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~ 69 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLF 69 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEecc
Confidence 346789999876654433 35566777788 8988887754
No 370
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=30.18 E-value=1.8e+02 Score=24.80 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=45.7
Q ss_pred eEEEecCCCCCcc-chHHHHHHHHhCCC-------eEEEeCCCCCCCCCcccccccchHHhH--------HHHHHHHHhC
Q 024316 11 HFVLVHGVNHGAW-CWYKLKARLVAGGH-------RVTAVDLAASGINMKRIEDVHTFHAYS--------EPLMEVLASL 74 (269)
Q Consensus 11 ~ivlvHG~~~~~~-~w~~~~~~L~~~g~-------~Via~Dl~G~G~S~~~~~~~~~~~~~~--------~~l~~~i~~l 74 (269)
.-+++.|.|+.+- .=+.+...+.+.|. +++.+|..|-=..++.. -...-..|+ .+|.++|+.+
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~-l~~~~~~~a~~~~~~~~~~L~e~i~~v 104 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD-LTPFKKPFARKDEEKEGKSLLEVVKAV 104 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc-chHHHHHHHhhcCcccCCCHHHHHHhc
Confidence 4456677775553 34455555555565 89999999842222210 001112222 2577777755
Q ss_pred CCCCcEEEEEeCh-hhHHHH
Q 024316 75 PAEEKVILVGHSL-GGVTLA 93 (269)
Q Consensus 75 ~~~~~vilVGHSm-GG~i~~ 93 (269)
++-+|||-|- ||.+.-
T Consensus 105 ---~ptvlIG~S~~~g~ft~ 121 (279)
T cd05312 105 ---KPTVLIGLSGVGGAFTE 121 (279)
T ss_pred ---CCCEEEEeCCCCCCCCH
Confidence 6889999994 776433
No 371
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=30.04 E-value=61 Score=26.56 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=21.7
Q ss_pred CCccEEEEEeCCCCCCChHHHHHHHHh
Q 024316 207 GSVKRVYLVCEEDIGLPKQFQHWMIQN 233 (269)
Q Consensus 207 ~~~P~l~i~g~~D~~~~~~~~~~~~~~ 233 (269)
...|+++++|+.|.+|.+...+++++.
T Consensus 168 ~~~P~~v~hG~~D~tV~~~n~~~~~~q 194 (220)
T PF10503_consen 168 PGYPRIVFHGTADTTVNPQNADQLVAQ 194 (220)
T ss_pred CCCCEEEEecCCCCccCcchHHHHHHH
Confidence 357999999999999988877766543
No 372
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=29.52 E-value=2.5e+02 Score=26.08 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=40.0
Q ss_pred CceEEEecCCCCCcc---chHHHHHHHHhCCCeEEEeCCCC----CCCCCcccccccchHHhHHHHHHHHH
Q 024316 9 EKHFVLVHGVNHGAW---CWYKLKARLVAGGHRVTAVDLAA----SGINMKRIEDVHTFHAYSEPLMEVLA 72 (269)
Q Consensus 9 g~~ivlvHG~~~~~~---~w~~~~~~L~~~g~~Via~Dl~G----~G~S~~~~~~~~~~~~~~~~l~~~i~ 72 (269)
+.||+++......-| ..++.+..|.+.|+.|+-|+- | .|.... +...+.+++++.+..++.
T Consensus 180 ~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~-g~lA~~g~~G~--Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 180 NRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNA-GEMAERGEAGV--GRMAEPLEIAAAAEALLR 247 (475)
T ss_pred CCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCC-CccccCCCcCC--CCCCCHHHHHHHHHHHHh
Confidence 578999887654422 345678889999999987754 3 343332 123466788888877764
No 373
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=29.35 E-value=1.9e+02 Score=23.31 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=22.6
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCC
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA 46 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G 46 (269)
++. +||-|... ..=..++..|.+.|++|++.+..-
T Consensus 8 ~k~-vlItGas~--~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 8 GKT-VWVTGAAQ--GIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCE-EEEeCCCc--hHHHHHHHHHHHCCCEEEEEecch
Confidence 444 55555432 223457778888899999998643
No 374
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=29.23 E-value=97 Score=27.36 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=27.3
Q ss_pred ccccCCCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCC
Q 024316 2 EEVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA 46 (269)
Q Consensus 2 ~~~~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G 46 (269)
++|.|. ++.|++. | .++..=..++..|.++||+|+++|.+.
T Consensus 15 ~~~~~~-~~~IlVt-G--gtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 15 PYWPSE-KLRICIT-G--AGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCC-CCEEEEE-C--CccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 456665 4455444 3 334444568888988899999999753
No 375
>PRK07206 hypothetical protein; Provisional
Probab=28.88 E-value=3e+02 Score=24.60 Aligned_cols=80 Identities=21% Similarity=0.138 Sum_probs=44.6
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCC----Cccc-c--cccchHHhHHHHHHHHHhCCCCCcEEE
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGIN----MKRI-E--DVHTFHAYSEPLMEVLASLPAEEKVIL 82 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S----~~~~-~--~~~~~~~~~~~l~~~i~~l~~~~~vil 82 (269)
+.|++|.|...+ ..+++.+.+.||+++++|-.+.-.. .... + ..... ...+.+.++++... -..++
T Consensus 3 k~~liv~~~~~~----~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~l~~~~~~~~--~d~vi 75 (416)
T PRK07206 3 KKVVIVDPFSSG----KFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIIN-GDIDDLVEFLRKLG--PEAII 75 (416)
T ss_pred CeEEEEcCCchH----HHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcC-CCHHHHHHHHHHcC--CCEEE
Confidence 578888886433 3577788888999999885432100 0000 0 00111 33557777777662 35777
Q ss_pred EEeChhhHHHHHHh
Q 024316 83 VGHSLGGVTLALAA 96 (269)
Q Consensus 83 VGHSmGG~i~~~~a 96 (269)
-|...+=.++..++
T Consensus 76 ~~~e~~~~~~a~l~ 89 (416)
T PRK07206 76 AGAESGVELADRLA 89 (416)
T ss_pred ECCCccHHHHHHHH
Confidence 77665444444433
No 376
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.29 E-value=3.7e+02 Score=24.56 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCc--cccee
Q 024316 29 KARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPH--KISVA 106 (269)
Q Consensus 29 ~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~--~v~~l 106 (269)
+..+...+|+++.+|-+|....+ +...+.+.++.+.+ .-..++||--++-|--+...|..+.+ .+.++
T Consensus 175 l~~~~~~~~DvVIIDTaGr~~~d---------~~l~~eL~~i~~~~-~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~gi 244 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAGRLQID---------EELMEELAAIKEIL-NPDEILLVVDAMTGQDAVNTAKTFNERLGLTGV 244 (428)
T ss_pred HHHHHhcCCCEEEEeCCCccccC---------HHHHHHHHHHHHhh-CCceEEEEEeccchHHHHHHHHHHHhhCCCCEE
Confidence 33444568999999999853321 23444554444444 22467888777766544444444332 46666
Q ss_pred EEE
Q 024316 107 VFV 109 (269)
Q Consensus 107 vli 109 (269)
|+-
T Consensus 245 IlT 247 (428)
T TIGR00959 245 VLT 247 (428)
T ss_pred EEe
Confidence 643
No 377
>PRK10867 signal recognition particle protein; Provisional
Probab=28.21 E-value=4.7e+02 Score=23.94 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=40.0
Q ss_pred HHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCc--cccee
Q 024316 29 KARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPH--KISVA 106 (269)
Q Consensus 29 ~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~--~v~~l 106 (269)
+......+|+++.+|-+|....+ +...+.+..+.+.. .-..+++|--++-|--+...|..+.+ .+.++
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~~d---------~~lm~eL~~i~~~v-~p~evllVlda~~gq~av~~a~~F~~~~~i~gi 245 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLHID---------EELMDELKAIKAAV-NPDEILLVVDAMTGQDAVNTAKAFNEALGLTGV 245 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcccC---------HHHHHHHHHHHHhh-CCCeEEEEEecccHHHHHHHHHHHHhhCCCCEE
Confidence 33444567999999999864321 33444444444443 22457888777766644444544433 35666
Q ss_pred EE
Q 024316 107 VF 108 (269)
Q Consensus 107 vl 108 (269)
|+
T Consensus 246 Il 247 (433)
T PRK10867 246 IL 247 (433)
T ss_pred EE
Confidence 65
No 378
>PRK06849 hypothetical protein; Provisional
Probab=28.07 E-value=1.6e+02 Score=26.06 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=45.8
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCC--ccc-------ccccchHHhHHHHHHHHHhCCCCCc
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINM--KRI-------EDVHTFHAYSEPLMEVLASLPAEEK 79 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~--~~~-------~~~~~~~~~~~~l~~~i~~l~~~~~ 79 (269)
.+.=|||=|..... =..++..|.+.|++|++.|-.....+. +.. ....+-++|.+.|.+++++. . -+
T Consensus 3 ~~~~VLI~G~~~~~--~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~-~-id 78 (389)
T PRK06849 3 TKKTVLITGARAPA--ALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRE-N-ID 78 (389)
T ss_pred CCCEEEEeCCCcHH--HHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHc-C-CC
Confidence 33345555654432 234677888889999999886433221 100 01224577899999999876 2 36
Q ss_pred EEEEEeCh
Q 024316 80 VILVGHSL 87 (269)
Q Consensus 80 vilVGHSm 87 (269)
+++-+.+-
T Consensus 79 ~vIP~~e~ 86 (389)
T PRK06849 79 LLIPTCEE 86 (389)
T ss_pred EEEECChH
Confidence 77777763
No 379
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=28.06 E-value=44 Score=27.96 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=19.7
Q ss_pred ccccchHHhHHHHHHHHHhC-CCCCcEEEEEe
Q 024316 55 EDVHTFHAYSEPLMEVLASL-PAEEKVILVGH 85 (269)
Q Consensus 55 ~~~~~~~~~~~~l~~~i~~l-~~~~~vilVGH 85 (269)
+..++..+|.++..++|+.+ ..++.++|||=
T Consensus 33 ~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGG 64 (253)
T PF01715_consen 33 DEEYSVGDFQRDAREAIEDILARGKIPILVGG 64 (253)
T ss_dssp TS---HHHHHHHHHHHHHHHHHTT-EEEEEES
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCeEEEECC
Confidence 35689999999888887765 23467888863
No 380
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=27.85 E-value=1.8e+02 Score=23.99 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=26.8
Q ss_pred CCceEEEecCCCCC--ccch-HHHHHHHHhCCCeEEEeCCC
Q 024316 8 EEKHFVLVHGVNHG--AWCW-YKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 8 ~g~~ivlvHG~~~~--~~~w-~~~~~~L~~~g~~Via~Dl~ 45 (269)
+++.|+||.=.... ...| +.....|++.|+.|..++.+
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~ 70 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV 70 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 47889999876532 3333 44666778889999988876
No 381
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=27.78 E-value=4.2e+02 Score=23.29 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=48.2
Q ss_pred cCCCCceEEEecCCCCCccchHHHHHHHHhCCC-eEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcE-EE
Q 024316 5 VGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKV-IL 82 (269)
Q Consensus 5 ~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~-~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~v-il 82 (269)
.|+-++||+|=-|...+-+.|...++.+.+.|- +|+.+.. | -|..+. |+..++--.....++++. .-+| +-
T Consensus 196 va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~er-G--~~tf~~---~~~~~ldl~ai~~lk~~~-~lPVi~d 268 (335)
T PRK08673 196 VGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCER-G--IRTFET---ATRNTLDLSAVPVIKKLT-HLPVIVD 268 (335)
T ss_pred HHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEEC-C--CCCCCC---cChhhhhHHHHHHHHHhc-CCCEEEe
Confidence 455589999999999999999999999977665 6766653 3 232211 122222222333444431 2466 34
Q ss_pred EEeChhh
Q 024316 83 VGHSLGG 89 (269)
Q Consensus 83 VGHSmGG 89 (269)
-.||.|-
T Consensus 269 ~sH~~G~ 275 (335)
T PRK08673 269 PSHATGK 275 (335)
T ss_pred CCCCCcc
Confidence 6999885
No 382
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=27.56 E-value=58 Score=36.76 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhhHHHHHHh
Q 024316 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAA 96 (269)
Q Consensus 66 ~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a 96 (269)
.+.++++++ +.++-.++|||+|=+.+.++|
T Consensus 663 Al~~lL~~~-Gi~Pd~v~GHSlGE~aAa~aA 692 (2582)
T TIGR02813 663 GQYKLFTQA-GFKADMTAGHSFGELSALCAA 692 (2582)
T ss_pred HHHHHHHHc-CCccceeecCCHHHHHHHHHh
Confidence 345556677 567889999999998776655
No 383
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=27.47 E-value=66 Score=25.97 Aligned_cols=21 Identities=10% Similarity=0.398 Sum_probs=15.2
Q ss_pred HHHHHHhCCCCCcEEEEEeChh
Q 024316 67 LMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 67 l~~~i~~l~~~~~vilVGHSmG 88 (269)
+.+++.+.+ .+++.||||+=|
T Consensus 142 i~~~i~~~~-~~tVLIVGHnp~ 162 (201)
T PRK15416 142 IKDLQRKSP-DKNIVIFTHNHC 162 (201)
T ss_pred HHHHHHhCC-CCEEEEEeCchh
Confidence 366666663 368999999865
No 384
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=27.25 E-value=2.8e+02 Score=21.13 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcccce
Q 024316 26 YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISV 105 (269)
Q Consensus 26 ~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~ 105 (269)
..+.+.|.+.||.|+ |+ |..+ .+...++.+++..+...+.+- ..+.-||+.-|==|+ +.+|.++| -|++
T Consensus 16 ~~l~~~L~~~g~eV~--D~---G~~~--~~~~~dYpd~a~~va~~V~~g-~~~~GIliCGtGiG~--siaANK~~-GIRA 84 (148)
T PRK05571 16 EEIIEHLEELGHEVI--DL---GPDS--YDASVDYPDYAKKVAEAVVAG-EADRGILICGTGIGM--SIAANKVK-GIRA 84 (148)
T ss_pred HHHHHHHHHCCCEEE--Ec---CCCC--CCCCCCHHHHHHHHHHHHHcC-CCCEEEEEcCCcHHH--HHHHhcCC-CeEE
Confidence 457889999999985 43 2111 110237788999998888654 335666666554443 23344555 3443
Q ss_pred e
Q 024316 106 A 106 (269)
Q Consensus 106 l 106 (269)
.
T Consensus 85 A 85 (148)
T PRK05571 85 A 85 (148)
T ss_pred E
Confidence 3
No 385
>PRK07069 short chain dehydrogenase; Validated
Probab=26.88 E-value=2.5e+02 Score=22.61 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=22.8
Q ss_pred EEecCCCCCccchHHHHHHHHhCCCeEEEeCCC
Q 024316 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 13 vlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~ 45 (269)
++|.|.. +..-..++..|.+.|++|+..+..
T Consensus 2 ilVtG~~--~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAA--GGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCC--ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666653 445567888898889999999754
No 386
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=26.83 E-value=1.4e+02 Score=28.41 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=58.0
Q ss_pred ccCCCCceEEEecCCCCCccchHHHHH--------HHHhCCCeEEEeCCCC----C-CCCCcccccc-cchHHhHHHHHH
Q 024316 4 VVGMEEKHFVLVHGVNHGAWCWYKLKA--------RLVAGGHRVTAVDLAA----S-GINMKRIEDV-HTFHAYSEPLME 69 (269)
Q Consensus 4 ~~~~~g~~ivlvHG~~~~~~~w~~~~~--------~L~~~g~~Via~Dl~G----~-G~S~~~~~~~-~~~~~~~~~l~~ 69 (269)
..+..+.|+-|-=|++.+...-..+.+ .|...|-+|+.-.--| + |.|......+ ...-.+...+.+
T Consensus 253 ~s~~~~ipLTLSiGvg~g~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~al~d 332 (655)
T COG3887 253 ESSQKNIPLTLSIGVGYGENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVISTALSD 332 (655)
T ss_pred HhhccCcceEEEEEeccCcccHHHHHHHHHHhHHHHhccCCceEEEEcCCCceeeeCCCcchhHHhHHHHHHHHHHHHHH
Confidence 344446788888888877766554433 2223344555443333 2 3453221111 133455556666
Q ss_pred HHHhCCCCCcEEEEEe------ChhhHHHHHHhhhCCcccceeEEEec
Q 024316 70 VLASLPAEEKVILVGH------SLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 70 ~i~~l~~~~~vilVGH------SmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
.|.. .++|+++|| ++|++++...-+..-.+ .+-+++++
T Consensus 333 ~i~e---~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp 376 (655)
T COG3887 333 IIKE---SDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDP 376 (655)
T ss_pred HHhh---cCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECc
Confidence 6654 369999999 78999766653333334 45666664
No 387
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=26.82 E-value=52 Score=19.05 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=7.8
Q ss_pred CceEEEecC
Q 024316 9 EKHFVLVHG 17 (269)
Q Consensus 9 g~~ivlvHG 17 (269)
.+.|+++||
T Consensus 32 p~~vilVHG 40 (43)
T PF07521_consen 32 PRKVILVHG 40 (43)
T ss_dssp SSEEEEESS
T ss_pred CCEEEEecC
Confidence 478999999
No 388
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.57 E-value=1.5e+02 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=24.2
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCC
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~ 45 (269)
|..||-| |+.+..|..++......+-+|+++|+-
T Consensus 46 ~~~ViDL---GAAPGgWsQva~~~~~~~~~ivavDi~ 79 (205)
T COG0293 46 GMVVVDL---GAAPGGWSQVAAKKLGAGGKIVAVDIL 79 (205)
T ss_pred CCEEEEc---CCCCCcHHHHHHHHhCCCCcEEEEECc
Confidence 4455554 567778988777776656679999983
No 389
>PHA00350 putative assembly protein
Probab=26.43 E-value=1.1e+02 Score=27.72 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=25.7
Q ss_pred eEEEecCCCCCccc----hHHHHHHHHhCCCeEEEeCCCCC
Q 024316 11 HFVLVHGVNHGAWC----WYKLKARLVAGGHRVTAVDLAAS 47 (269)
Q Consensus 11 ~ivlvHG~~~~~~~----w~~~~~~L~~~g~~Via~Dl~G~ 47 (269)
.|.++||.+.|..+ |..+++.|. .|..|++ +++|.
T Consensus 2 mI~l~tG~pGSGKT~~aV~~~i~palk-~GR~V~T-NI~Gl 40 (399)
T PHA00350 2 MIYAIVGRPGSYKSYEAVVYHIIPALK-DGRKVIT-NIPGL 40 (399)
T ss_pred ceEEEecCCCCchhHHHHHHHHHHHHH-CCCEEEE-CCCCC
Confidence 37899999877753 667888885 4777765 77774
No 390
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=26.26 E-value=88 Score=24.74 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=18.8
Q ss_pred EEecCCCCCccchHHHHHHHHhCCCeEEEeCC
Q 024316 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDL 44 (269)
Q Consensus 13 vlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl 44 (269)
|-|.|.|.=+. ..+..|++.||+|+++|.
T Consensus 3 I~ViGlGyvGl---~~A~~lA~~G~~V~g~D~ 31 (185)
T PF03721_consen 3 IAVIGLGYVGL---PLAAALAEKGHQVIGVDI 31 (185)
T ss_dssp EEEE--STTHH---HHHHHHHHTTSEEEEE-S
T ss_pred EEEECCCcchH---HHHHHHHhCCCEEEEEeC
Confidence 34557665554 456678889999999996
No 391
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=26.20 E-value=1.1e+02 Score=25.26 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=17.8
Q ss_pred cEEEEEeChhhHHHHHHhhhCC
Q 024316 79 KVILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 79 ~vilVGHSmGG~i~~~~a~~~p 100 (269)
...++|=|.|++++..++...+
T Consensus 30 ~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 30 TTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred CCEEEEEcHHHHHHHHHHcCCC
Confidence 3579999999999888876644
No 392
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.49 E-value=3.8e+02 Score=24.35 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=41.4
Q ss_pred HHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHHHhhhCCcccc
Q 024316 29 KARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKIS 104 (269)
Q Consensus 29 ~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~~a~~~p~~v~ 104 (269)
...+.+.+|.||.+|-.| +.. .=+.+-+++.++.+++.. ..+++|--+.=|..+..-|..+.+.|+
T Consensus 176 v~~fKke~fdvIIvDTSG-----Rh~----qe~sLfeEM~~v~~ai~P-d~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSG-----RHK----QEASLFEEMKQVSKAIKP-DEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred HHHHHhcCCcEEEEeCCC-----chh----hhHHHHHHHHHHHhhcCC-CeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 345667789999999755 222 225666778888887733 467777666666644444555555443
No 393
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=3.8e+02 Score=26.76 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=40.3
Q ss_pred CCCCCCCcccccccchHHhHHHHHHHHHhCC--CCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEec
Q 024316 45 AASGINMKRIEDVHTFHAYSEPLMEVLASLP--AEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 45 ~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~--~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~~ 111 (269)
|..|.|.... .=|+..+.+|.+.+|.+. ..++|.++|-+====..-- |..+|.|+++|+++.+
T Consensus 778 P~RG~sGDSG---GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDp-ALLRPGRFDKLvyvG~ 842 (953)
T KOG0736|consen 778 PNRGRSGDSG---GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDP-ALLRPGRFDKLVYVGP 842 (953)
T ss_pred ccCCCCCCcc---ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccCh-hhcCCCccceeEEecC
Confidence 4455554321 357899999999999884 2357998873211111111 3457889999999975
No 394
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=25.17 E-value=2.7e+02 Score=21.39 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=42.1
Q ss_pred chHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH
Q 024316 24 CWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 24 ~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~ 90 (269)
+|+..+..-.+.+.+.|++-+-|-|.-..+.. .....+.+.+.++++.....+++++|-++---.
T Consensus 93 ~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~--~~a~~~~~ai~~fl~~~~~l~~V~~v~~~~~~~ 157 (165)
T cd02908 93 CYRNSLELARENGLRSIAFPAISTGVYGYPLD--EAARIALKTVREFLEEHDAIERVIFVCFSEEDY 157 (165)
T ss_pred HHHHHHHHHHHcCCCEEEECceecCCCCCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH
Confidence 56666665566678889998888776554431 245566667777776532346788888775433
No 395
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.12 E-value=3.4e+02 Score=23.93 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=53.7
Q ss_pred ccccCCCCceEEEecCCCCCcc--chHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCc
Q 024316 2 EEVVGMEEKHFVLVHGVNHGAW--CWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEK 79 (269)
Q Consensus 2 ~~~~~~~g~~ivlvHG~~~~~~--~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 79 (269)
+.|....|-+||--+ -+..+. .|+-+-..- ++||.|+.+|-.|. ..+. ..+.++|..+.+-.....+
T Consensus 187 ~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Ak-ar~~DvvliDTAGR------Lhnk---~nLM~EL~KI~rV~~k~~~ 255 (340)
T COG0552 187 EVWGERLGVPVISGK-EGADPAAVAFDAIQAAK-ARGIDVVLIDTAGR------LHNK---KNLMDELKKIVRVIKKDDP 255 (340)
T ss_pred HHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHH-HcCCCEEEEeCccc------ccCc---hhHHHHHHHHHHHhccccC
Confidence 345555566776655 333333 477666554 67999999998763 1122 3344444444333211122
Q ss_pred -----EEEEEeChhhHHHHHHhhhCCc--ccceeEEE
Q 024316 80 -----VILVGHSLGGVTLALAADKFPH--KISVAVFV 109 (269)
Q Consensus 80 -----vilVGHSmGG~i~~~~a~~~p~--~v~~lvli 109 (269)
+.||--+.-|-=+..=|..+.+ .++++|+-
T Consensus 256 ~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 256 DAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred CCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEE
Confidence 7777788888844443555543 46676653
No 396
>PRK08226 short chain dehydrogenase; Provisional
Probab=25.04 E-value=2.8e+02 Score=22.63 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=23.6
Q ss_pred eEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCC
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~ 45 (269)
..++|.|.. +..=+.+++.|.+.|++|+..+..
T Consensus 7 ~~~lItG~s--~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 7 KTALITGAL--QGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CEEEEeCCC--ChHHHHHHHHHHHCCCEEEEecCC
Confidence 356777764 334455788888899999999753
No 397
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=24.84 E-value=97 Score=30.42 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred HHHHHHH---hCCCCCcEEEEEeChhhHHHHHHhh
Q 024316 66 PLMEVLA---SLPAEEKVILVGHSLGGVTLALAAD 97 (269)
Q Consensus 66 ~l~~~i~---~l~~~~~vilVGHSmGG~i~~~~a~ 97 (269)
++.+.++ .. ...--++.|.|+||+++..+|.
T Consensus 52 ~l~~~l~~~~~~-~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 52 ALLELLGAHLRL-RVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred HHHHHhhhhhcc-CCCCceEEeeCHHHHHHHHHHc
Confidence 4555554 23 3356788999999998877775
No 398
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=24.66 E-value=1.9e+02 Score=25.40 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=53.4
Q ss_pred ceEEEecCCCCCcc-chHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 10 KHFVLVHGVNHGAW-CWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 10 ~~ivlvHG~~~~~~-~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
.|+++|- .|+| .|..+-++|..+++.-.-+=|+-+|.--.... ...-+.-...+..++... .+.+.+|||-|-=
T Consensus 214 apvfYvS---nSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~-~sga~rK~~~l~nil~~~-p~~kfvLVGDsGE 288 (373)
T COG4850 214 APVFYVS---NSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNII-ESGAARKGQSLRNILRRY-PDRKFVLVGDSGE 288 (373)
T ss_pred CCeEEec---CChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccc-cchhhhcccHHHHHHHhC-CCceEEEecCCCC
Confidence 4666653 3444 35666666666555444444444442211110 011122233555566667 4589999998732
Q ss_pred h--HHHHHHhhhCCcccceeEEEec
Q 024316 89 G--VTLALAADKFPHKISVAVFVTA 111 (269)
Q Consensus 89 G--~i~~~~a~~~p~~v~~lvli~~ 111 (269)
= -|-..++..+|++|.++-+=|.
T Consensus 289 ~DpeIYae~v~~fP~RIl~I~IRdv 313 (373)
T COG4850 289 HDPEIYAEMVRCFPNRILGIYIRDV 313 (373)
T ss_pred cCHHHHHHHHHhCccceeeEeeeec
Confidence 1 1444557789999988765553
No 399
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=24.62 E-value=1.9e+02 Score=24.63 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=41.2
Q ss_pred hCCCeEEEeCCCC--CCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHH-----HhhhCCccccee
Q 024316 34 AGGHRVTAVDLAA--SGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLAL-----AADKFPHKISVA 106 (269)
Q Consensus 34 ~~g~~Via~Dl~G--~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~-----~a~~~p~~v~~l 106 (269)
++|.|||++=.+= -|.-..+.....+ -+.++.+...|+..+...++.|+=|+-||.+.+. +..+++.++..+
T Consensus 46 kr~srvI~~Ihrqe~~~~~giPi~~~I~-i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~ 124 (285)
T PF01972_consen 46 KRGSRVITLIHRQERVSFLGIPIYRYID-IDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVI 124 (285)
T ss_pred HhCCEEEEEEEeccccceeccccceeEc-HhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEE
Confidence 5678999885431 0000111111112 2445567777776655568999999999995332 223456666544
Q ss_pred E
Q 024316 107 V 107 (269)
Q Consensus 107 v 107 (269)
|
T Consensus 125 V 125 (285)
T PF01972_consen 125 V 125 (285)
T ss_pred E
Confidence 3
No 400
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=24.57 E-value=68 Score=29.62 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCC-CCcEEEEEeChhhHHHHHHhh-hCC
Q 024316 64 SEPLMEVLASLPA-EEKVILVGHSLGGVTLALAAD-KFP 100 (269)
Q Consensus 64 ~~~l~~~i~~l~~-~~~vilVGHSmGG~i~~~~a~-~~p 100 (269)
.+.+.+.++.|+- ....||-|-|||..-|.++++ ..|
T Consensus 342 ~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~P 380 (511)
T TIGR03712 342 INVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLSP 380 (511)
T ss_pred HHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCCC
Confidence 3444455556632 236999999999997777754 445
No 401
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=24.50 E-value=3.4e+02 Score=22.09 Aligned_cols=63 Identities=13% Similarity=-0.012 Sum_probs=39.6
Q ss_pred CceEEEecCCCCCcc---chHHHHHHHHhCCCeEEEeCC--CCCCCCCcccccccchHHhHHHHHHHHHh
Q 024316 9 EKHFVLVHGVNHGAW---CWYKLKARLVAGGHRVTAVDL--AASGINMKRIEDVHTFHAYSEPLMEVLAS 73 (269)
Q Consensus 9 g~~ivlvHG~~~~~~---~w~~~~~~L~~~g~~Via~Dl--~G~G~S~~~~~~~~~~~~~~~~l~~~i~~ 73 (269)
+.||+++......-| ..++.+..|++.|+.|+.|.. ...|... .+...+.+++...+.+++..
T Consensus 132 ~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~lAcg~~G--~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 132 SKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYG--NGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred CCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCcccCCCcC--CCCCCCHHHHHHHHHHHHhh
Confidence 578999887655444 356777889999999987732 1223221 11334667777777666654
No 402
>PRK00431 RNase III inhibitor; Provisional
Probab=24.45 E-value=3.4e+02 Score=21.03 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=41.4
Q ss_pred chHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH
Q 024316 24 CWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 24 ~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~ 90 (269)
+++..+....+.+.+.|++-.-|-|.-..+.. .....+.+.+.++++.-...+++++|-++---.
T Consensus 100 ~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~--~~A~~~~~~i~~f~~~~~~l~~I~~v~~~~~~~ 164 (177)
T PRK00431 100 AYRNSLRLAAELGLRSIAFPAISTGVYGYPLE--DAARIAVKTVREFLTRHKSPEEVYFVCYDEEAY 164 (177)
T ss_pred HHHHHHHHHHHcCCceEEECccccCccCCCHH--HHHHHHHHHHHHHHhcCCCcCEEEEEECCHHHH
Confidence 45555555566778889988888876654432 245566666666655443346788888875444
No 403
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=24.35 E-value=96 Score=25.10 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeChhhHHHH
Q 024316 64 SEPLMEVLASLPAEEKVILVGHSLGGVTLA 93 (269)
Q Consensus 64 ~~~l~~~i~~l~~~~~vilVGHSmGG~i~~ 93 (269)
.+.+.+.++.. ..-..++|=|||||.+.+
T Consensus 111 ~~~ir~~~e~~-d~~~~~~i~~slgGGTGS 139 (216)
T PF00091_consen 111 LEQIRKEIEKC-DSLDGFFIVHSLGGGTGS 139 (216)
T ss_dssp HHHHHHHHHTS-TTESEEEEEEESSSSHHH
T ss_pred ccccchhhccc-cccccceecccccceecc
Confidence 34444444433 234789999999988533
No 404
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.28 E-value=78 Score=23.15 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.7
Q ss_pred cchHHHHHHHHhCCCeEEEeCCC
Q 024316 23 WCWYKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 23 ~~w~~~~~~L~~~g~~Via~Dl~ 45 (269)
..+-.++..|+++|+.|++.|.-
T Consensus 23 G~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 23 GFFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred chHHHHHHHHHHcCCcEEEEecc
Confidence 35677999999999999999974
No 405
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=23.97 E-value=5.2e+02 Score=23.02 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=39.8
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEE
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVG 84 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVG 84 (269)
..+++||=-.-.......+...|.+.|+.|..+-+|. |++ ..+++.+..-...+++.- ..++-.|||
T Consensus 34 ~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~-GE~------~Ksl~~~~~i~~~ll~~~-~~R~s~iia 100 (360)
T COG0337 34 RKVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPD-GEE------YKSLETLEKIYDALLEAG-LDRKSTLIA 100 (360)
T ss_pred CeEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCC-Ccc------cccHHHHHHHHHHHHHcC-CCCCcEEEE
Confidence 3666666555445545677778888888887777775 222 246655555444445542 335566665
No 406
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=23.87 E-value=1e+02 Score=25.14 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=21.0
Q ss_pred CceEEEecCCCCCcc-----chHHHHHHHHhCCCeEEEe
Q 024316 9 EKHFVLVHGVNHGAW-----CWYKLKARLVAGGHRVTAV 42 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-----~w~~~~~~L~~~g~~Via~ 42 (269)
++.|++.+|...... .|..++..|.+.+++|+.+
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~ 143 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLL 143 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE-
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEE
Confidence 567777778766443 4677999998877787744
No 407
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=23.78 E-value=2.6e+02 Score=24.17 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=41.9
Q ss_pred ceEEEecCCCCCccchHHHHHHHHhC-CCeEEEeCCC----C--CC----------------CCCcccccccchHHhHHH
Q 024316 10 KHFVLVHGVNHGAWCWYKLKARLVAG-GHRVTAVDLA----A--SG----------------INMKRIEDVHTFHAYSEP 66 (269)
Q Consensus 10 ~~ivlvHG~~~~~~~w~~~~~~L~~~-g~~Via~Dl~----G--~G----------------~S~~~~~~~~~~~~~~~~ 66 (269)
+.+++|-|-..++.+ .++..|++. +..+|..|-. | +| -+-......++..+|.++
T Consensus 4 ~~~i~i~GptgsGKt--~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~ 81 (307)
T PRK00091 4 PKVIVIVGPTASGKT--ALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD 81 (307)
T ss_pred ceEEEEECCCCcCHH--HHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence 468888887655543 234444332 3466766652 1 11 111112244678888888
Q ss_pred HHHHHHhC-CCCCcEEEEEeChhhH
Q 024316 67 LMEVLASL-PAEEKVILVGHSLGGV 90 (269)
Q Consensus 67 l~~~i~~l-~~~~~vilVGHSmGG~ 90 (269)
..+.|+.. ..++.++|| ||.
T Consensus 82 a~~~i~~i~~~gk~pIlv----GGt 102 (307)
T PRK00091 82 ALAAIADILARGKLPILV----GGT 102 (307)
T ss_pred HHHHHHHHHhCCCCEEEE----CcH
Confidence 88877754 233567888 665
No 408
>PRK12828 short chain dehydrogenase; Provisional
Probab=23.75 E-value=2.9e+02 Score=21.85 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=22.3
Q ss_pred EEEecCCCCCccchHHHHHHHHhCCCeEEEeCC
Q 024316 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDL 44 (269)
Q Consensus 12 ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl 44 (269)
.+||.|....- =..++..|.++|++|++.+.
T Consensus 9 ~vlItGatg~i--G~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 9 VVAITGGFGGL--GRATAAWLAARGARVALIGR 39 (239)
T ss_pred EEEEECCCCcH--hHHHHHHHHHCCCeEEEEeC
Confidence 47778754322 24577788788999999986
No 409
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=23.60 E-value=77 Score=29.51 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=27.7
Q ss_pred chHHhHHHHHHHHH-hCCCCCcEEEEEe-ChhhHHHHHHhhh
Q 024316 59 TFHAYSEPLMEVLA-SLPAEEKVILVGH-SLGGVTLALAADK 98 (269)
Q Consensus 59 ~~~~~~~~l~~~i~-~l~~~~~vilVGH-SmGG~i~~~~a~~ 98 (269)
-+++|++++...|. .+ ++.|-.++|| |=||.+++.++.+
T Consensus 382 yLe~fa~d~~~~i~~e~-~~~PdlI~GnYsDgnlvA~LLs~~ 422 (550)
T PF00862_consen 382 YLEEFADDAEREILAEL-QGKPDLIIGNYSDGNLVASLLSRK 422 (550)
T ss_dssp GHHHHHHHHHHHHHHHH-TS--SEEEEEHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh-CCCCcEEEeccCcchHHHHHHHhh
Confidence 56788988877664 35 4467788998 7788888888754
No 410
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins. Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE
Probab=23.54 E-value=61 Score=25.31 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCCCCcccccccchH-HhHHHHHHHHHhCCCCCcEEEEEeCh
Q 024316 47 SGINMKRIEDVHTFH-AYSEPLMEVLASLPAEEKVILVGHSL 87 (269)
Q Consensus 47 ~G~S~~~~~~~~~~~-~~~~~l~~~i~~l~~~~~vilVGHSm 87 (269)
||-|+....+...+. +..+.+.++++.+. ++++||||=.
T Consensus 67 hGIt~e~l~~~~~~~~~~~~~l~~f~~~~~--~~~~lVaHNa 106 (177)
T cd06136 67 TGLSNDLLEHKAPFDSDTANLIKLFLRRQP--KPICLVAHNG 106 (177)
T ss_pred hCcCHHHHhcCCCccHHHHHHHHHHHHhcC--CCCEEEEcCC
Confidence 565543222223333 34566667776552 4689999975
No 411
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.36 E-value=4.6e+02 Score=22.14 Aligned_cols=18 Identities=28% Similarity=0.123 Sum_probs=14.3
Q ss_pred HhCCCeEEEeCCCCCCCC
Q 024316 33 VAGGHRVTAVDLAASGIN 50 (269)
Q Consensus 33 ~~~g~~Via~Dl~G~G~S 50 (269)
...+|+++.+|-+|....
T Consensus 151 ~~~~~D~ViIDT~G~~~~ 168 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQN 168 (272)
T ss_pred HHCCCCEEEEeCCCCCcc
Confidence 356899999999997643
No 412
>PRK05359 oligoribonuclease; Provisional
Probab=23.35 E-value=78 Score=24.92 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=25.8
Q ss_pred CCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 48 GINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 48 G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
|.++....+..++.+...++.++++..-......|+||+..
T Consensus 67 GIt~~~l~~~~~~~e~~~~~l~fl~~~~~~~~~~l~g~~v~ 107 (181)
T PRK05359 67 GLIDRVRASTVSEAEAEAQTLEFLKQWVPAGKSPLCGNSIG 107 (181)
T ss_pred cCcHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCceeecchh
Confidence 44433333445888888888888875311234668999854
No 413
>PRK06310 DNA polymerase III subunit epsilon; Validated
Probab=23.07 E-value=74 Score=26.54 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChh
Q 024316 47 SGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLG 88 (269)
Q Consensus 47 ~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmG 88 (269)
||-++....+..++.+....+.++++ +..+||||+..
T Consensus 61 hgIt~e~v~~~p~~~ev~~~~~~fl~-----~~~~lvghn~~ 97 (250)
T PRK06310 61 HHISDAMLRDKPKIAEVFPQIKGFFK-----EGDYIVGHSVG 97 (250)
T ss_pred cCcCHHHHhCCCCHHHHHHHHHHHhC-----CCCEEEEECHH
Confidence 56554333344577777777777663 23689999853
No 414
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=23.04 E-value=86 Score=30.39 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=47.7
Q ss_pred CCceEEEecCCCCC----------ccchHHHHHHHHhCCCeEEEeCC-----CCCCCCC-ccc--ccccchHHhHHHHHH
Q 024316 8 EEKHFVLVHGVNHG----------AWCWYKLKARLVAGGHRVTAVDL-----AASGINM-KRI--EDVHTFHAYSEPLME 69 (269)
Q Consensus 8 ~g~~ivlvHG~~~~----------~~~w~~~~~~L~~~g~~Via~Dl-----~G~G~S~-~~~--~~~~~~~~~~~~l~~ 69 (269)
++-+|++-|..... ...+..++.+|.+.||++|++|- .|.+.-+ +.. +..-...+....+..
T Consensus 47 ~~~~VLmYH~V~d~~~~~~~~~Vspe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~~~LP~KaV~LTFDDGy~sny~~AlP 126 (672)
T PRK14581 47 NTFVVIAYHDVEDDSADQRYLSVRSSALNEQFVWLRDNGYHVVSVDQILAARNGGPTLPDKAVLLTFDDGYSSFYRRVYP 126 (672)
T ss_pred CceEEEEeCcccCCCCccCccccCHHHHHHHHHHHHHCcCEEecHHHHHHHHhcCCCCCCCeEEEEEEcCCcchHHHHHH
Confidence 46799999998543 24588899999999999999862 2322212 211 011122345567778
Q ss_pred HHHhCCCCC-cEEEEEeC
Q 024316 70 VLASLPAEE-KVILVGHS 86 (269)
Q Consensus 70 ~i~~l~~~~-~vilVGHS 86 (269)
++++. +.. -+.+||.-
T Consensus 127 ILKky-g~pATfFvVg~w 143 (672)
T PRK14581 127 LLKAY-KWSAVLAPVGTW 143 (672)
T ss_pred HHHHc-CCCEEEEEechh
Confidence 88887 332 34556643
No 415
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=22.99 E-value=90 Score=26.39 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=46.9
Q ss_pred CceEEEecCCCCCcc--chHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeC
Q 024316 9 EKHFVLVHGVNHGAW--CWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHS 86 (269)
Q Consensus 9 g~~ivlvHG~~~~~~--~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHS 86 (269)
.+.||++.|+-.++. .=+.++..|-.+|++|+++.-| |+. +.--..+-.+-.+++..+.+.+.=-|
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P----t~e--------E~~~p~lWRfw~~lP~~G~i~IF~RS 122 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP----SAE--------ELDHDFLWRIHKALPERGEIGIFNRS 122 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC----CHH--------HHcCchHHHHHHhCCCCCeEEEEcCc
Confidence 479999999976664 4688999998899999999655 211 11112455566777655567766666
Q ss_pred hhhH
Q 024316 87 LGGV 90 (269)
Q Consensus 87 mGG~ 90 (269)
+=+-
T Consensus 123 WY~~ 126 (264)
T TIGR03709 123 HYED 126 (264)
T ss_pred cccc
Confidence 5443
No 416
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=22.92 E-value=4.2e+02 Score=21.63 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=22.5
Q ss_pred EEEecCCCCCccchHHHHHHHHhCCCeEEEeCC
Q 024316 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDL 44 (269)
Q Consensus 12 ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl 44 (269)
.++|=|. ++..-..++..|.+.|++|+..|.
T Consensus 7 ~vlItGa--s~gIG~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 7 VVLVTGG--ASGLGRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred EEEEECC--CChHHHHHHHHHHHCCCEEEEEeC
Confidence 4455443 455667788889899999999874
No 417
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=22.88 E-value=2.9e+02 Score=21.42 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhHHH
Q 024316 27 KLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTL 92 (269)
Q Consensus 27 ~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~ 92 (269)
.+...+++.||+|+....- ....++. |.+.+ ..+-++|+|+|==|=.+
T Consensus 3 ~~~~~y~~~gy~v~~~S~~----------~~~g~~~----l~~~l----~~k~~vl~G~SGvGKSS 50 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAK----------TGEGIEE----LKELL----KGKTSVLLGQSGVGKSS 50 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTT----------TTTTHHH----HHHHH----TTSEEEEECSTTSSHHH
T ss_pred HHHHHHHHcCCcEEEEeCC----------CCcCHHH----HHHHh----cCCEEEEECCCCCCHHH
Confidence 4566777889999998753 1123333 33333 23679999999877733
No 418
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=22.74 E-value=1.3e+02 Score=22.74 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEEEeChhhHHHHH
Q 024316 61 HAYSEPLMEVLASLPAEEKVILVGHSLGGVTLAL 94 (269)
Q Consensus 61 ~~~~~~l~~~i~~l~~~~~vilVGHSmGG~i~~~ 94 (269)
.+....|.=.+..+ +.+.++++|||==|++...
T Consensus 39 ~~~~~sle~av~~l-~v~~IiV~gHt~CGa~~~~ 71 (153)
T PF00484_consen 39 DSALASLEYAVYHL-GVKEIIVCGHTDCGAIKAA 71 (153)
T ss_dssp HHHHHHHHHHHHTS-T-SEEEEEEETT-HHHHHH
T ss_pred cchhhheeeeeecC-CCCEEEEEcCCCchHHHHH
Confidence 34444555556666 5678999999998886543
No 419
>PF13479 AAA_24: AAA domain
Probab=22.39 E-value=2.5e+02 Score=22.55 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=34.6
Q ss_pred chHHHHHHHH-----hCCCeEEEeCCCCC----------------CCCCcccccccchHHhHHHHHHHHHhC-C-CCCcE
Q 024316 24 CWYKLKARLV-----AGGHRVTAVDLAAS----------------GINMKRIEDVHTFHAYSEPLMEVLASL-P-AEEKV 80 (269)
Q Consensus 24 ~w~~~~~~L~-----~~g~~Via~Dl~G~----------------G~S~~~~~~~~~~~~~~~~l~~~i~~l-~-~~~~v 80 (269)
.|..+.+.+. ..+|+++.+|--.+ +...........+..+...+.++++++ . ...+|
T Consensus 51 s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~V 130 (213)
T PF13479_consen 51 SWEDFLEALDELEEDEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNV 130 (213)
T ss_pred CHHHHHHHHHHHHhccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcE
Confidence 6877777652 35899999984321 011000001234555555666666642 1 23678
Q ss_pred EEEEeC
Q 024316 81 ILVGHS 86 (269)
Q Consensus 81 ilVGHS 86 (269)
++++|+
T Consensus 131 I~tah~ 136 (213)
T PF13479_consen 131 IFTAHA 136 (213)
T ss_pred EEEEEE
Confidence 888886
No 420
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=22.31 E-value=3.3e+02 Score=20.22 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=32.3
Q ss_pred Cce-EEEecCCCCCccch--HHHHHHHHhCCC---eEE----EeCCCCCCCCCcccccccchHHhHHHHHHHHHh
Q 024316 9 EKH-FVLVHGVNHGAWCW--YKLKARLVAGGH---RVT----AVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS 73 (269)
Q Consensus 9 g~~-ivlvHG~~~~~~~w--~~~~~~L~~~g~---~Vi----a~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~ 73 (269)
.+| |+-.||+...+..| +-+++.|-..|- -|. ..|+| ....+++|-++|.+.|..
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP----------~~~~v~~Yk~~L~~~I~~ 115 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFP----------HNSNVDEYKEQLKSWIRG 115 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCC----------CchHHHHHHHHHHHHHHH
Confidence 444 55589999888877 445555433332 222 33444 123567777788777764
No 421
>KOG4306 consensus Glycosylphosphatidylinositol-specific phospholipase C [Signal transduction mechanisms]
Probab=22.25 E-value=1.5e+02 Score=25.66 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=34.0
Q ss_pred CceEEEecCCCCCccch---HHHHHHHHhCCCeEEEeCCC-CCCCCC
Q 024316 9 EKHFVLVHGVNHGAWCW---YKLKARLVAGGHRVTAVDLA-ASGINM 51 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w---~~~~~~L~~~g~~Via~Dl~-G~G~S~ 51 (269)
.+-+-++||...+...+ ..+..+|.+++--|+..|+| ++|.++
T Consensus 95 D~~~~i~HGl~~~~~v~~vL~ev~~Fl~~h~eEVViL~f~~~fg~~~ 141 (306)
T KOG4306|consen 95 DREFYICHGLFSTYPVLEVLNEVRQFLSEHPEEVVILEFRHFFGMTE 141 (306)
T ss_pred CcceEEEeeccccccHHHHHHHHHHHHHhCCCEEEEEeccchhccCc
Confidence 34589999999888777 45677888887789999998 677775
No 422
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.20 E-value=4.9e+02 Score=22.05 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=41.6
Q ss_pred hHHHHHHHHh-CCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEe-ChhhHHHHHHhhhC-Cc
Q 024316 25 WYKLKARLVA-GGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGH-SLGGVTLALAADKF-PH 101 (269)
Q Consensus 25 w~~~~~~L~~-~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGH-SmGG~i~~~~a~~~-p~ 101 (269)
....+..+.+ .+++++.+|.+|....+ ....+++.++++.... ..++||-- ++++--+...+.++ .-
T Consensus 142 l~~~l~~l~~~~~~D~ViIDt~Gr~~~~---------~~~l~el~~~~~~~~~-~~~~LVl~a~~~~~d~~~~~~~f~~~ 211 (270)
T PRK06731 142 MTRALTYFKEEARVDYILIDTAGKNYRA---------SETVEEMIETMGQVEP-DYICLTLSASMKSKDMIEIITNFKDI 211 (270)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCcCC---------HHHHHHHHHHHhhhCC-CeEEEEEcCccCHHHHHHHHHHhCCC
Confidence 3344445543 36899999999864321 2344445555554422 24676654 56776555555443 34
Q ss_pred ccceeEEE
Q 024316 102 KISVAVFV 109 (269)
Q Consensus 102 ~v~~lvli 109 (269)
.++++|+-
T Consensus 212 ~~~~~I~T 219 (270)
T PRK06731 212 HIDGIVFT 219 (270)
T ss_pred CCCEEEEE
Confidence 56677643
No 423
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.96 E-value=2.6e+02 Score=21.98 Aligned_cols=36 Identities=11% Similarity=-0.036 Sum_probs=27.4
Q ss_pred CceEEEecCCCCCcc---chHHHHHHHHhCCCeEEEeCC
Q 024316 9 EKHFVLVHGVNHGAW---CWYKLKARLVAGGHRVTAVDL 44 (269)
Q Consensus 9 g~~ivlvHG~~~~~~---~w~~~~~~L~~~g~~Via~Dl 44 (269)
+.||+++......-| ..++.+..|++.|+.|+-|+-
T Consensus 112 ~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 112 ETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred CCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 678999886654433 468888999999999987764
No 424
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=21.88 E-value=1e+02 Score=25.49 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=48.1
Q ss_pred CceEEEecCCCCCcc--chHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeC
Q 024316 9 EKHFVLVHGVNHGAW--CWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHS 86 (269)
Q Consensus 9 g~~ivlvHG~~~~~~--~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHS 86 (269)
-+.||++.|+-+++. .=+.++..|-.+|++|+++.-|- +. +.--..+-.+-.+++..+.+.+.=-|
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt----~e--------E~~~p~lwRfw~~lP~~G~i~IF~rS 97 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPS----DR--------ERTQWYFQRYVQHLPAAGEIVLFDRS 97 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC----HH--------HHcChHHHHHHHhCCCCCeEEEEeCc
Confidence 478999999976664 46888999988899999987652 11 11122456677777655677777666
Q ss_pred hhhH
Q 024316 87 LGGV 90 (269)
Q Consensus 87 mGG~ 90 (269)
+=+-
T Consensus 98 wY~~ 101 (230)
T TIGR03707 98 WYNR 101 (230)
T ss_pred hhhh
Confidence 5444
No 425
>PF08257 Sulfakinin: Sulfakinin family; InterPro: IPR013259 The sulfakinin (SK) family of neuropeptides have only been identified in crustaceans and insects. For most species there is the potential for producing two sulfakinin peptides, one has a short sulfakinin sequence. The function of the sulfakinins is difficult to assess. For the Periplaneta americana (American cockroach), various forms of the endogenous sulfakinins have been shown to be active on the hindgut, and also on the heart. In Calliphora vomitoria (Blue blowfly) the peptides act as neurotransmitters or neuromodulators, linking the brain with all thoracic and abdominal ganglia. In adults of Penaeus monodon (Penoeid shrimp) they appear to be restricted to a few neurones in the brain with a neural pathway extending along to the ventral thoracic and abdominal ganglia [].
Probab=21.49 E-value=38 Score=12.70 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=4.4
Q ss_pred cCCCCCC
Q 024316 243 KGGDHMA 249 (269)
Q Consensus 243 ~~~gH~~ 249 (269)
++.||+-
T Consensus 2 ~dyghmr 8 (9)
T PF08257_consen 2 DDYGHMR 8 (9)
T ss_pred Ccccccc
Confidence 4577863
No 426
>PLN02840 tRNA dimethylallyltransferase
Probab=21.47 E-value=2.9e+02 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=23.1
Q ss_pred cccchHHhHHHHHHHHHhC-CCCCcEEEEEeC
Q 024316 56 DVHTFHAYSEPLMEVLASL-PAEEKVILVGHS 86 (269)
Q Consensus 56 ~~~~~~~~~~~l~~~i~~l-~~~~~vilVGHS 86 (269)
..|+..+|.++..+.|+.+ ..++.+||||=+
T Consensus 88 e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGT 119 (421)
T PLN02840 88 DDYSVGAFFDDARRATQDILNRGRVPIVAGGT 119 (421)
T ss_pred CceeHHHHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 5678899988888888865 234678999854
No 427
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=21.47 E-value=3.4e+02 Score=21.34 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCCCc--ccccccchHHhHHHHHHHHH
Q 024316 27 KLKARLVAGGHRVTAVDLAASGINMK--RIEDVHTFHAYSEPLMEVLA 72 (269)
Q Consensus 27 ~~~~~L~~~g~~Via~Dl~G~G~S~~--~~~~~~~~~~~~~~l~~~i~ 72 (269)
...++|.+.+|.|..+|+.-.-..+. ..+...++.+..+.+.+.+.
T Consensus 18 acv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg 65 (236)
T KOG4022|consen 18 ACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVG 65 (236)
T ss_pred HHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHH
Confidence 35677888999999999976543332 22344577777777665544
No 428
>PRK03482 phosphoglycerate mutase; Provisional
Probab=21.42 E-value=2.5e+02 Score=22.41 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=21.0
Q ss_pred chHHhHHHHHHHHHhC---CCCCcEEEEEeChhhHHHHH
Q 024316 59 TFHAYSEPLMEVLASL---PAEEKVILVGHSLGGVTLAL 94 (269)
Q Consensus 59 ~~~~~~~~l~~~i~~l---~~~~~vilVGHSmGG~i~~~ 94 (269)
++.++.+-+..+++.+ ..++++++|+| ||.+...
T Consensus 121 s~~~~~~Rv~~~l~~~~~~~~~~~vliVsH--g~~i~~l 157 (215)
T PRK03482 121 SMQELSDRMHAALESCLELPQGSRPLLVSH--GIALGCL 157 (215)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH
Confidence 6666666666666543 12357999999 4554333
No 429
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=21.23 E-value=98 Score=22.57 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=10.4
Q ss_pred CCCCCccchHHHHHHHHhCCCeEE
Q 024316 17 GVNHGAWCWYKLKARLVAGGHRVT 40 (269)
Q Consensus 17 G~~~~~~~w~~~~~~L~~~g~~Vi 40 (269)
||-.|...|.++..++ +.|-+|+
T Consensus 90 GW~~S~Gi~~Ei~~a~-~~~~~V~ 112 (116)
T PF09152_consen 90 GWDDSEGIWAEIEAAE-EMGMPVF 112 (116)
T ss_dssp TGGG-HHHHHHHHHHH-HTT-EEE
T ss_pred CccccccHHHHHHHHH-HcCCeEE
Confidence 5555555555544443 2344544
No 430
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=21.11 E-value=3.2e+02 Score=19.58 Aligned_cols=74 Identities=24% Similarity=0.263 Sum_probs=47.8
Q ss_pred eEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcccccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH
Q 024316 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 11 ~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~ 90 (269)
-|+.-||-. +.....-++.+.-..-+|.++++. ...+.+++.+.+.+++++++..+.+++.-==+||.
T Consensus 4 ili~sHG~~--A~gl~~s~~~i~G~~~~i~~i~~~----------~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGS 71 (116)
T TIGR00824 4 IIISGHGQA--AIALLKSAEMIFGEQNNVGAVPFV----------PGENAETLQEKYNAALADLDTEEEVLFLVDIFGGS 71 (116)
T ss_pred EEEEecHHH--HHHHHHHHHHHcCCcCCeEEEEcC----------CCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 466778863 233444455553333468888874 12377889999999999885445688777777888
Q ss_pred HHHHHh
Q 024316 91 TLALAA 96 (269)
Q Consensus 91 i~~~~a 96 (269)
....++
T Consensus 72 p~n~a~ 77 (116)
T TIGR00824 72 PYNAAA 77 (116)
T ss_pred HHHHHH
Confidence 654443
No 431
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=20.94 E-value=1.6e+02 Score=25.30 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=19.9
Q ss_pred CceEEEecCCCCCcc-----chHHHHHHHHhCCCeEEE
Q 024316 9 EKHFVLVHGVNHGAW-----CWYKLKARLVAGGHRVTA 41 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-----~w~~~~~~L~~~g~~Via 41 (269)
++-|+++||...... .|..++..|.+.|++|+.
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl 215 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKL 215 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEE
Confidence 344566777643322 366777777666777663
No 432
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=20.89 E-value=2.2e+02 Score=24.41 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHhC--CCCCcEEEEEeChhhHHHHHHhhhCCcccceeEEEe
Q 024316 62 AYSEPLMEVLASL--PAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT 110 (269)
Q Consensus 62 ~~~~~l~~~i~~l--~~~~~vilVGHSmGG~i~~~~a~~~p~~v~~lvli~ 110 (269)
+..+-+..+++.+ ..+..+-=||..+||+ +.++|.++..+|.++-+..
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l-~~~aA~~y~v~V~GvTlS~ 105 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGL-AIYAAEEYGVTVVGVTLSE 105 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCChhHH-HHHHHHHcCCEEEEeeCCH
Confidence 4445555556665 2345688899999999 5566778778888876554
No 433
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=20.63 E-value=3.2e+02 Score=23.04 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=18.2
Q ss_pred CceEEEecCCCCCcc-chHHHHHHHHhCCC-eEEEeCC
Q 024316 9 EKHFVLVHGVNHGAW-CWYKLKARLVAGGH-RVTAVDL 44 (269)
Q Consensus 9 g~~ivlvHG~~~~~~-~w~~~~~~L~~~g~-~Via~Dl 44 (269)
...|++-||..+.++ .|..+-..|.+.++ +|+.--.
T Consensus 142 ~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtv 179 (262)
T PF06180_consen 142 EAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTV 179 (262)
T ss_dssp EEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEET
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEe
Confidence 345666677776665 35666666666553 3554443
No 434
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=20.59 E-value=4.6e+02 Score=21.16 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=26.6
Q ss_pred CccccCCCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCC
Q 024316 1 MEEVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDL 44 (269)
Q Consensus 1 ~~~~~~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl 44 (269)
|+....+.++ .+||.|... ..=..++..|.+.|++|+..|.
T Consensus 1 ~~~~~~l~~k-~~lItGas~--giG~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 1 MNDLFSLAGK-NILITGSAQ--GIGFLLATGLAEYGAEIIINDI 41 (254)
T ss_pred CcccccCCCC-EEEEECCCC--hHHHHHHHHHHHcCCEEEEEcC
Confidence 4454444444 567777543 3334577788888999998764
No 435
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=20.50 E-value=1.6e+02 Score=24.44 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.4
Q ss_pred EEEEEeChhhHHHHHHhhhCC
Q 024316 80 VILVGHSLGGVTLALAADKFP 100 (269)
Q Consensus 80 vilVGHSmGG~i~~~~a~~~p 100 (269)
-.++|-|.|+.++..+|...+
T Consensus 33 ~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 33 RRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 388999999999888876653
No 436
>KOG2697 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=20.50 E-value=2.3e+02 Score=24.48 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=37.5
Q ss_pred eEEEeCCCCCCCCCcc--cccccchHHhHHHHHHHHHhCCCCCcEEEEEeChhhH
Q 024316 38 RVTAVDLAASGINMKR--IEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGV 90 (269)
Q Consensus 38 ~Via~Dl~G~G~S~~~--~~~~~~~~~~~~~l~~~i~~l~~~~~vilVGHSmGG~ 90 (269)
..+++|+|. |.|+-. .+...+.+..+.||....+.- .+..++||+-++.=-
T Consensus 234 AlvsIDmPA-GPSEVLVIADE~a~p~~vA~DLLSQAEHG-~DSQviLv~V~lS~~ 286 (446)
T KOG2697|consen 234 ALVSIDMPA-GPSEVLVIADEHASPVYVAADLLSQAEHG-PDSQVILVVVGLSVD 286 (446)
T ss_pred ceEEeccCC-CCceEEEEecCCCChHHHHHHHHhHhhcC-CCceEEEEEecCCHH
Confidence 567999995 677643 234457788888998888764 567899998887654
No 437
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=20.42 E-value=1.1e+02 Score=20.73 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCeEEEeC
Q 024316 26 YKLKARLVAGGHRVTAVD 43 (269)
Q Consensus 26 ~~~~~~L~~~g~~Via~D 43 (269)
+.+...|+..||+|++.-
T Consensus 53 r~VLnKLE~~G~kVvsmt 70 (83)
T PF06399_consen 53 RVVLNKLEKMGYKVVSMT 70 (83)
T ss_dssp HHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHhcCeEEEEEe
Confidence 458889999999999875
No 438
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=20.31 E-value=2.5e+02 Score=24.10 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=24.2
Q ss_pred CCeEEEeCCCCCCCCCc-ccc--ccc--c-hHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 36 GHRVTAVDLAASGINMK-RIE--DVH--T-FHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 36 g~~Via~Dl~G~G~S~~-~~~--~~~--~-~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
+-++|.+| ||||..+. ... ..+ + .-+++..|.+.+++.+ -+|++.
T Consensus 55 ~~~~IvID-pGHGG~DpGAvg~~G~~EKdi~L~IA~~l~~~L~~~G--~~V~lT 105 (287)
T PRK10319 55 GKRVVMLD-PGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHG--IDARLT 105 (287)
T ss_pred CCeEEEEE-CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHHCC--CEEEEe
Confidence 44799999 89997652 111 111 1 1245556666666542 345443
No 439
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=20.31 E-value=3.3e+02 Score=21.58 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=22.3
Q ss_pred EecCCCCCccchHHHHHHHHhCCCeEEEeCCC
Q 024316 14 LVHGVNHGAWCWYKLKARLVAGGHRVTAVDLA 45 (269)
Q Consensus 14 lvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~ 45 (269)
+|.|. ++..-..+++.|.++|++|+..+.+
T Consensus 2 lItG~--~g~iG~~la~~l~~~G~~v~~~~r~ 31 (239)
T TIGR01830 2 LVTGA--SRGIGRAIALKLAKEGAKVIITYRS 31 (239)
T ss_pred EEECC--CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55554 3455677888898889999999864
No 440
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=20.25 E-value=1.9e+02 Score=25.36 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=27.2
Q ss_pred CCceEEEecCCCCCcc-----chHHHHHHHHhCCCeEE
Q 024316 8 EEKHFVLVHGVNHGAW-----CWYKLKARLVAGGHRVT 40 (269)
Q Consensus 8 ~g~~ivlvHG~~~~~~-----~w~~~~~~L~~~g~~Vi 40 (269)
+.+.+|||.|++..+. .++.+.+.|++.|.+|+
T Consensus 248 gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~gi~v~ 285 (326)
T TIGR02362 248 DDHYAVLVNNLGGTTPMEQMVFNNDVHELLALEALHLP 285 (326)
T ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 3579999999998885 48999999988887654
No 441
>PRK15450 signal transduction protein PmrD; Provisional
Probab=20.23 E-value=1.1e+02 Score=20.67 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=25.2
Q ss_pred CCCCCChHHHHHHHHhCCCCeEEEEcCCCCCC
Q 024316 218 EDIGLPKQFQHWMIQNYPVNEVMEIKGGDHMA 249 (269)
Q Consensus 218 ~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~ 249 (269)
-|.+.|.+.++.++.+.+...+.++. +.|-.
T Consensus 43 gDlLsPL~dA~YciNr~~~~t~Kii~-As~Ys 73 (85)
T PRK15450 43 GDLLSPLQNALYCINREKLQTLKILS-ASCYS 73 (85)
T ss_pred ccccccchhhhhhhcCCCCceEEEEe-ccccC
Confidence 47788888999999888877788887 87765
No 442
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=20.22 E-value=1.4e+02 Score=23.82 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=27.5
Q ss_pred CCcccccccchHHhHHHHHHHHHhCC-CCCcEEEEEeCh
Q 024316 50 NMKRIEDVHTFHAYSEPLMEVLASLP-AEEKVILVGHSL 87 (269)
Q Consensus 50 S~~~~~~~~~~~~~~~~l~~~i~~l~-~~~~vilVGHSm 87 (269)
|..+.+..++.+.|-..+..+++... ...+++++|.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~lGDSi 42 (214)
T cd01820 4 APTPVDDLDGDPRWMSRHERFVAEAKQKEPDVVFIGDSI 42 (214)
T ss_pred CCcCCcccccchhHHHHHHHHHHHhhcCCCCEEEECchH
Confidence 44455567888888888888887642 224799999996
No 443
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=20.18 E-value=2.6e+02 Score=24.24 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCCCceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCccc---ccccchHHhHHHHHHHHHhCCCCCcEEE
Q 024316 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRI---EDVHTFHAYSEPLMEVLASLPAEEKVIL 82 (269)
Q Consensus 6 ~~~g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~---~~~~~~~~~~~~l~~~i~~l~~~~~vil 82 (269)
|.+-.-||+.|== .+...++ ...+.+.|.. +.+|..|+..+.... -...+.+..++.|..++++ +..+=+|
T Consensus 180 Gv~~~rvvigH~D-~~~D~~y--~~~la~~G~~-l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~--Gy~~qIl 253 (308)
T PF02126_consen 180 GVDPSRVVIGHMD-RNPDLDY--HRELADRGVY-LEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEE--GYADQIL 253 (308)
T ss_dssp T--GGGEEETSGG-GST-HHH--HHHHHHTT-E-EEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHT--TTGGGEE
T ss_pred CCChhHeEEeCCC-CCCCHHH--HHHHHhcCCE-EEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHc--CCcCcEE
Confidence 3334578888843 2333222 3345566744 899999775443321 1234667888888888885 3456778
Q ss_pred EEeChhh
Q 024316 83 VGHSLGG 89 (269)
Q Consensus 83 VGHSmGG 89 (269)
++|+++-
T Consensus 254 LS~D~~~ 260 (308)
T PF02126_consen 254 LSHDIGR 260 (308)
T ss_dssp E-HHHES
T ss_pred Eeccccc
Confidence 8988765
No 444
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=20.17 E-value=4.1e+02 Score=20.66 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=54.1
Q ss_pred CceEEEecCCCCCccchHHHHHHHHhCCCeEEEeCCCCCCCCCcc-----cccccchHHhHHHHHHHHHhCCCCCcEEEE
Q 024316 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKR-----IEDVHTFHAYSEPLMEVLASLPAEEKVILV 83 (269)
Q Consensus 9 g~~ivlvHG~~~~~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~-----~~~~~~~~~~~~~l~~~i~~l~~~~~vilV 83 (269)
+..++++..-. .....+...|+.. -.+-++-+-.||.+... .-+..++..+.+.+...=.++.....+.|.
T Consensus 22 ~~~v~~ld~~~---d~~~qI~~~L~~~-~~i~~lhivsHG~~G~l~LG~~~l~~~~L~~~~~~l~~w~~~L~~~~~IlLy 97 (165)
T PF14252_consen 22 GVEVVILDPSR---DGLEQIAQALAGY-QNIDALHIVSHGSPGALQLGNTWLSAETLEQYADELAQWGQALADDGDILLY 97 (165)
T ss_pred CCEEEEEeCCC---chHHHHHHHHhcC-CCCceEEEEcCCCcceEEECCceeCHHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45666666533 3367788888543 45788888899976521 112347888888888877777555689999
Q ss_pred EeChhhH
Q 024316 84 GHSLGGV 90 (269)
Q Consensus 84 GHSmGG~ 90 (269)
|...+..
T Consensus 98 GC~vaag 104 (165)
T PF14252_consen 98 GCNVAAG 104 (165)
T ss_pred cCccCcc
Confidence 9998876
No 445
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=20.15 E-value=2.2e+02 Score=19.64 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=24.5
Q ss_pred hHHHHHHHHhCCCCeEEEEcCCCCCCCCCCcHH
Q 024316 224 KQFQHWMIQNYPVNEVMEIKGGDHMAMLSDPQK 256 (269)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~ 256 (269)
|..++.+.+...+....+++-.||.+-+..|+.
T Consensus 8 ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~ 40 (100)
T PF01751_consen 8 PSDAKAIAKALGGEEYIVIATSGHLLELAKPED 40 (100)
T ss_dssp HHHHHHHHHHSSTTTEEEEEESSSSEESTTSSH
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcccccccccc
Confidence 456667777766555777777999999988755
Done!