BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024317
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HW6|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|C Chain C, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|D Chain D, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
Length = 433
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 76 LSEESVVKRLAGDG---VQGYSDGEPGS-ARFDKPKSFAVDMKGN-IYVADKSNHVIRKI 130
L+ E V AG G GY DGE S A F+ P S A D K Y+ D NH +RKI
Sbjct: 370 LTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDXKRKCFYIGDCDNHRVRKI 429
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 134 GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI 186
G I G K R D P + + F DFE H+ A D G ++I+++
Sbjct: 205 GWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEV 257
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 103 FDKPKSFAVDMKGNIYVADKSNHVIRKI 130
+ P+ AVD +G +YVAD+ N+ + K+
Sbjct: 107 LNYPEGLAVDTQGAVYVADRGNNRVVKL 134
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 103 FDKPKSFAVDMKGNIYVADKSNHVIRKI 130
+ P AVD GN+YV D N+ + K+
Sbjct: 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKL 176
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 103 FDKPKSFAVDMKGNIYVADKSNHVIRKITNL 133
+ P + AVD +YVAD+ N + K+T+L
Sbjct: 233 LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263
>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
Unknown Function (np_812590.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
Length = 409
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 95 DGEPGSARFDKPKSFAVDMKGNIYVADK-SNHVIRKITNL-GVTTIAGGGSKKEGRADGP 152
DG A F +P VD GN Y+ D + +RK+ L G + G + DG
Sbjct: 314 DGLREEALFAQPNGXTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGT 373
Query: 153 AQNASFSNDFELTF 166
A+F+ +++ +
Sbjct: 374 PLEATFNYPYDICY 387
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSA 101
Q++INP S I D+ ++ +S L PL EE ++ ++ Y D G
Sbjct: 290 QIDINPAS-IGAHSKVDMALVGDIKSTLRAL-LPLVEEKADRKFLDKALEDYRDARKGLD 347
Query: 102 RFDKPKSFAVDMKGNIYVADKSNH 125
KP A+ + Y+A + +H
Sbjct: 348 DLAKPSEKAIHPQ---YLAQQISH 368
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSA 101
Q++INP S I D+ ++ +S L PL EE ++ ++ Y D G
Sbjct: 290 QIDINPAS-IGAHSKVDMALVGDIKSTLRAL-LPLVEEKADRKFLDKALEDYRDARKGLD 347
Query: 102 RFDKPKSFAVDMKGNIYVADKSNH 125
KP A+ + Y+A + +H
Sbjct: 348 DLAKPSEKAIHPQ---YLAQQISH 368
>pdb|3I57|A Chain A, Type 2 Repeat Of The Mucus Binding Protein Mub From
Lactobacillus Reuteri
pdb|3I57|B Chain B, Type 2 Repeat Of The Mucus Binding Protein Mub From
Lactobacillus Reuteri
Length = 185
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 55 GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFD 104
G +D ++ + + P S +K+ GDG + + D P +FD
Sbjct: 11 GETDQMLRQDDLDGYTDETIPYSTAEGIKKFEGDGYELFKDNFPAGEKFD 60
>pdb|2GLX|A Chain A, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|B Chain B, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|C Chain C, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|D Chain D, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|E Chain E, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|F Chain F, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
Length = 332
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 41 HQLEINPH---SVIDRPGSSDLIVLDSSRSAFYTLSFPL----SEESVVKRLAGDGVQGY 93
H + + PH ++RP + ++LD + TL F L +E + AG G +G
Sbjct: 150 HAVYLPPHLQGWRLERPEAGGGVILDITVHDADTLRFVLNDDPAEAVAISHSAGMGKEGV 209
Query: 94 SDGEPGSARF 103
DG G RF
Sbjct: 210 EDGVMGVLRF 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,913,260
Number of Sequences: 62578
Number of extensions: 257562
Number of successful extensions: 498
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 17
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)