BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024317
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2
SV=1
Length = 727
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLG---VTTIAG---GGSK 144
G DG A F+ P+ A+ K N IYVAD NH+IRKI +L VTT+AG G
Sbjct: 262 GRKDGRFSEAAFNSPQGVAI--KNNVIYVADTENHLIRKI-DLELEIVTTVAGIGIQGVD 318
Query: 145 KEGRADGPAQNASFSNDFELTF 166
KEG A G Q S+ +++ F
Sbjct: 319 KEGGAKGEEQ--PISSPWDVVF 338
>sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1
Length = 726
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI--TNLGVTTIAG---GGSKKE 146
G DG + F+ P+ A+ M IYVAD NH+IRKI V+T+AG G+ KE
Sbjct: 267 GRKDGIFSESTFNSPQGVAI-MNNIIYVADTENHLIRKIDLEAEKVSTVAGIGIQGTDKE 325
Query: 147 GRADGPAQNASFSNDFELTF 166
G A G Q S+ +++ F
Sbjct: 326 GGAKGEQQ--PISSPWDVVF 343
>sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1
Length = 726
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG--VTTIAG---GGSKKE 146
G DG + F+ P+ A+ M IYVAD NH+IRKI V+T+AG G+ KE
Sbjct: 267 GRKDGIFSESSFNSPQGVAI-MNNIIYVADTENHLIRKIDLEAEMVSTVAGIGIQGTDKE 325
Query: 147 GRADGPAQNASFSNDFELTF 166
G A G Q S+ +++ F
Sbjct: 326 GGAKGDEQ--PISSPWDVVF 343
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 89 GVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLGVTTIAGGGSKKEG 147
G++ Y D P S P VD N + +AD +H I + G + GG G
Sbjct: 210 GIKLYKDSLPPSPLL-FPGKITVDHVSNRLVIADTGHHRILVVWKNGQIQYSIGGPNP-G 267
Query: 148 RADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE 191
R DG +SF++ + + +I + ++D N LIR+I+L+ E
Sbjct: 268 RKDGIFSESSFNSPQGVAIMNNI--IYVADTENHLIRKIDLEAE 309
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 84 RLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGN---IYVADKSNHVIRKIT--NLGVTT 137
R AG G + ++ P A F +P ++ +G ++VAD + +R ++ + V
Sbjct: 389 RFAGSGNEENRNNAYPHKAGFAQPSGLSLASEGPWSCLFVADSESSTVRTVSLKDGAVKH 448
Query: 138 IAGGGSKKE-----GRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED 192
+ GG G DG NA + +T+ L ++D N I+ ++ K ++
Sbjct: 449 LVGGERDPMNLFAFGDVDGVGINARLQHPLGVTWDQKRNLLYVADSYNHKIKVVDPKTKN 508
Query: 193 CSKSSQSGSA 202
C+ + +G+A
Sbjct: 509 CTTLAGTGNA 518
>sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1
Length = 725
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI--TNLGVTTIAG---GGSKKE 146
G DG + F+ P+ A+ IYVAD NH+IRKI VTT+AG G+ E
Sbjct: 267 GRKDGMFSESSFNSPQGVAI-ADNVIYVADTENHLIRKIDLEAEKVTTVAGVGIQGTDTE 325
Query: 147 GRADGPAQNASFSNDFEL 164
G +G Q S D L
Sbjct: 326 GGEEGDKQPISSPWDVAL 343
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 85 LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
L GD + + G+A+F+ P AVD G+IYVADK NH ++
Sbjct: 787 LEGDHLFSFGGHGQGNAKFNNPWGVAVDDLGSIYVADKDNHRVQ 830
>sp|Q9V4M2|WECH_DROME Protein wech OS=Drosophila melanogaster GN=wech PE=1 SV=2
Length = 832
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKE 146
G+ FD P VD+ I V DK NH ++ T GV + G KE
Sbjct: 593 GNGEFDLPAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKE 640
>sp|Q8U4F3|SYK_PYRFU Lysine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=lysS PE=3 SV=1
Length = 523
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 134 GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI 186
G T I G K R D P + A F DFE H+ A D G ++IR++
Sbjct: 205 GWTDIRDGNVKLRWRVDWPMRWAHFGVDFEPAGKDHLAAGSSYDTGKEIIREV 257
>sp|E1BJS7|LIN41_BOVIN E3 ubiquitin-protein ligase TRIM71 OS=Bos taurus GN=TRIM71 PE=3
SV=2
Length = 868
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG 134
G+ +F +P+ AVD +G I VAD NH ++ + G
Sbjct: 790 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNG 825
>sp|Q2Q1W2|LIN41_HUMAN E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1
SV=1
Length = 868
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG 134
G+ +F +P+ AVD +G I VAD NH ++ + G
Sbjct: 790 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNG 825
>sp|F6QEU4|LIN41_XENTR E3 ubiquitin-protein ligase TRIM71 OS=Xenopus tropicalis GN=trim71
PE=3 SV=1
Length = 814
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 736 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 765
>sp|D3ZVM4|LIN41_RAT E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus GN=Trim71
PE=3 SV=1
Length = 855
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 777 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 806
>sp|Q1PSW8|LIN41_MOUSE E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus GN=Trim71 PE=1
SV=1
Length = 855
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 777 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 806
>sp|Q9V5E1|PAL1_DROME Peptidyl-alpha-hydroxyglycine alpha-amidating lyase 1 OS=Drosophila
melanogaster GN=Pal1 PE=1 SV=1
Length = 541
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 87 GDGVQGYSDG---EPGSAR-FDKPKSFAVDMKGNIYVAD-KSNHVIRKITNLGVTTIAGG 141
GDG + G +PGS R F KP S AV G+ +VAD N I K + G + G
Sbjct: 207 GDGKPALTLGDAFQPGSGRKFCKPTSVAVLDNGDFFVADGYCNARILKYSRKGELILFWG 266
Query: 142 GSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR 184
+ G + A F+ LT VP + L +D N ++
Sbjct: 267 QNTFSGISYDVAPQNFFAIPHALTLVPELQLLCAADRENGRVQ 309
>sp|Q9U489|LIN41_CAEEL Protein lin-41 OS=Caenorhabditis elegans GN=lin-41 PE=2 SV=1
Length = 1147
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADG 151
G S PG +FD+P + NI VADK NH ++ G+ + G GRA G
Sbjct: 883 GTSGNRPG--QFDRPAGITTNSLNNIVVADKDNHRVQVFDENGMFLLKFG---DRGRAVG 937
>sp|Q1PRL4|LIN41_CHICK E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus GN=TRIM71 PE=2
SV=1
Length = 876
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 798 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 827
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 97 EPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIA-GGGSKKEGRADGP 152
PG +FD+P A D+ I VADK NH I+ T G + G K G+ + P
Sbjct: 657 RPG--QFDRPAGVACDVSRRIVVADKDNHRIQIFTFEGQFILKFGEKGTKNGQFNYP 711
>sp|C4JTH6|UTP25_UNCRE U3 small nucleolar RNA-associated protein 25 OS=Uncinocarpus reesii
(strain UAMH 1704) GN=UTP25 PE=3 SV=1
Length = 715
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 148 RADGPAQNASFSNDFELTFVPHICALLIS--DHGNQLIRQINLKPEDCSKSSQSGSALGA 205
+ DG F + EL V H ALL+ DH + +NL+P++ G G
Sbjct: 409 KEDGKKIEYDFLSSIELVIVDHADALLMQNWDHVEYIFSHLNLQPKEA-----HGCDFGR 463
Query: 206 VSVWVL 211
V W L
Sbjct: 464 VRTWYL 469
>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1
SV=1
Length = 744
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1
SV=1
Length = 744
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2
PE=1 SV=2
Length = 744
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2
SV=1
Length = 744
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|B1YE76|Y1099_EXIS2 UPF0154 protein Exig_1099 OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=Exig_1099 PE=3 SV=1
Length = 76
Score = 32.0 bits (71), Expect = 4.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 205 AVSVWVLVSVLSCLVSLVIGF-VARPYIIRHTGRLDPPLQHDM-EALPNQSGE 255
A +W+L+++L + + +GF +AR Y++ + + +PP+ DM + L Q G+
Sbjct: 2 ATWIWILIALLCLVAGVALGFYIARRYMMNYLEQ-NPPINEDMIKTLMMQMGQ 53
>sp|Q88VI8|Y2061_LACPL UPF0154 protein lp_2061 OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=lp_2061 PE=3 SV=1
Length = 78
Score = 31.6 bits (70), Expect = 6.3, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 205 AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPLQHDM-EALPNQSGETSTDLLLR 263
+ +W+L+ V+ LV L GF + +++ + +PP+ +M ++ Q G+ ++ L
Sbjct: 4 STGIWILIVVIGVLVGLTGGFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKL- 62
Query: 264 HQKRN 268
HQ N
Sbjct: 63 HQMLN 67
>sp|Q9R1R2|TRIM3_MOUSE Tripartite motif-containing protein 3 OS=Mus musculus GN=Trim3 PE=1
SV=1
Length = 744
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SHGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1
SV=2
Length = 744
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SHGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|O70277|TRIM3_RAT Tripartite motif-containing protein 3 OS=Rattus norvegicus GN=Trim3
PE=1 SV=1
Length = 744
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SHGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,865,789
Number of Sequences: 539616
Number of extensions: 3950734
Number of successful extensions: 10516
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10441
Number of HSP's gapped (non-prelim): 94
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)