Query 024317
Match_columns 269
No_of_seqs 173 out of 1702
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.9 7.4E-22 1.6E-26 199.6 23.9 197 42-242 565-768 (1057)
2 PLN02919 haloacid dehalogenase 99.9 2.5E-20 5.3E-25 188.7 24.0 189 44-240 682-884 (1057)
3 KOG4659 Uncharacterized conser 99.8 3.2E-18 7E-23 166.9 20.0 213 26-242 388-619 (1899)
4 PF08450 SGL: SMP-30/Gluconola 99.7 7.4E-16 1.6E-20 132.6 16.7 166 46-252 41-223 (246)
5 PF08450 SGL: SMP-30/Gluconola 99.6 1.4E-13 3.1E-18 118.4 18.2 143 43-233 84-244 (246)
6 KOG4659 Uncharacterized conser 99.6 7.3E-14 1.6E-18 137.0 16.4 189 42-241 472-688 (1899)
7 COG3386 Gluconolactonase [Carb 99.4 1.1E-11 2.4E-16 109.7 18.3 164 47-235 27-232 (307)
8 TIGR02604 Piru_Ver_Nterm putat 99.4 8.2E-11 1.8E-15 107.3 20.2 161 31-236 1-204 (367)
9 KOG1520 Predicted alkaloid syn 99.2 1.3E-10 2.9E-15 103.3 12.0 151 45-235 115-284 (376)
10 COG3391 Uncharacterized conser 99.2 1.5E-09 3.3E-14 99.5 19.2 151 45-234 116-272 (381)
11 PF10282 Lactonase: Lactonase, 99.2 2.7E-09 5.8E-14 96.5 20.6 167 43-239 142-317 (345)
12 COG3391 Uncharacterized conser 99.2 1.3E-09 2.7E-14 100.0 18.3 156 45-242 74-237 (381)
13 PF10282 Lactonase: Lactonase, 99.1 5.9E-09 1.3E-13 94.3 19.1 167 43-239 35-217 (345)
14 COG4257 Vgb Streptogramin lyas 99.1 7.1E-09 1.5E-13 88.4 17.2 185 43-258 102-321 (353)
15 COG4257 Vgb Streptogramin lyas 99.1 4.4E-09 9.4E-14 89.7 15.2 164 44-254 61-230 (353)
16 PRK11028 6-phosphogluconolacto 99.0 2.8E-08 6E-13 89.0 18.5 157 45-239 35-200 (330)
17 TIGR02604 Piru_Ver_Nterm putat 99.0 9.6E-09 2.1E-13 93.7 15.5 162 45-233 124-338 (367)
18 PRK11028 6-phosphogluconolacto 99.0 2.6E-08 5.7E-13 89.2 17.9 164 45-238 126-298 (330)
19 COG3386 Gluconolactonase [Carb 99.0 3.7E-08 8E-13 87.4 18.1 153 42-235 108-276 (307)
20 KOG1214 Nidogen and related ba 99.0 6.8E-09 1.5E-13 99.2 13.1 151 42-238 1065-1220(1289)
21 PF03088 Str_synth: Strictosid 98.9 1.7E-08 3.7E-13 72.8 8.8 68 107-190 1-88 (89)
22 PF01436 NHL: NHL repeat; Int 98.8 4.5E-09 9.7E-14 59.2 4.1 28 103-130 1-28 (28)
23 PF06977 SdiA-regulated: SdiA- 98.8 1.3E-06 2.8E-11 75.2 19.5 185 31-237 7-243 (248)
24 KOG1520 Predicted alkaloid syn 98.7 1.3E-06 2.7E-11 78.2 15.8 113 102-242 113-247 (376)
25 PF01436 NHL: NHL repeat; Int 98.7 6.8E-08 1.5E-12 54.4 5.0 28 158-186 1-28 (28)
26 PF07995 GSDH: Glucose / Sorbo 98.6 2E-06 4.3E-11 77.5 15.4 166 44-235 1-201 (331)
27 TIGR03606 non_repeat_PQQ dehyd 98.6 1.4E-05 2.9E-10 74.5 20.7 178 27-235 15-249 (454)
28 KOG1214 Nidogen and related ba 98.5 8.1E-07 1.8E-11 85.4 11.6 138 46-227 1026-1167(1289)
29 COG2706 3-carboxymuconate cycl 98.5 1.5E-05 3.2E-10 70.5 18.3 165 43-233 38-209 (346)
30 PF07995 GSDH: Glucose / Sorbo 98.5 7.8E-06 1.7E-10 73.6 15.4 184 44-239 113-330 (331)
31 COG2706 3-carboxymuconate cycl 98.3 0.00033 7.2E-09 62.0 20.7 171 43-234 87-263 (346)
32 COG3204 Uncharacterized protei 98.2 0.00078 1.7E-08 58.6 21.2 174 43-238 84-306 (316)
33 PF03088 Str_synth: Strictosid 98.2 1.1E-05 2.5E-10 58.2 8.4 69 49-134 2-88 (89)
34 PF03022 MRJP: Major royal jel 98.2 0.00079 1.7E-08 59.4 21.3 173 30-234 43-254 (287)
35 TIGR03866 PQQ_ABC_repeats PQQ- 98.2 0.00038 8.3E-09 60.2 18.8 104 57-193 1-107 (300)
36 TIGR03866 PQQ_ABC_repeats PQQ- 98.1 0.0012 2.6E-08 57.0 21.7 117 46-193 32-149 (300)
37 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.00045 9.8E-09 62.5 18.3 116 56-195 12-142 (352)
38 PF02239 Cytochrom_D1: Cytochr 98.0 0.0011 2.3E-08 60.7 19.6 146 47-232 39-188 (369)
39 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.003 6.6E-08 57.2 20.4 81 43-133 45-136 (352)
40 TIGR03118 PEPCTERM_chp_1 conse 97.9 0.00039 8.5E-09 60.8 13.4 123 48-195 141-286 (336)
41 PF02239 Cytochrom_D1: Cytochr 97.9 0.00073 1.6E-08 61.8 15.7 105 56-194 5-113 (369)
42 PF06977 SdiA-regulated: SdiA- 97.8 0.00018 3.8E-09 62.1 10.4 79 43-130 169-247 (248)
43 PF03022 MRJP: Major royal jel 97.8 0.0022 4.7E-08 56.7 16.9 176 46-238 2-209 (287)
44 TIGR03606 non_repeat_PQQ dehyd 97.8 0.00082 1.8E-08 62.7 14.3 115 102-235 28-165 (454)
45 PF05787 DUF839: Bacterial pro 97.7 0.00099 2.2E-08 63.6 14.7 80 156-235 347-455 (524)
46 PF05787 DUF839: Bacterial pro 97.7 0.00072 1.6E-08 64.5 13.6 96 40-135 345-470 (524)
47 KOG4499 Ca2+-binding protein R 97.7 0.0002 4.3E-09 60.4 8.5 88 43-135 156-244 (310)
48 PF13449 Phytase-like: Esteras 97.6 0.02 4.4E-07 51.4 19.7 183 43-235 18-234 (326)
49 TIGR03118 PEPCTERM_chp_1 conse 97.5 0.012 2.5E-07 51.7 16.6 169 42-233 20-205 (336)
50 PF13449 Phytase-like: Esteras 97.5 0.016 3.6E-07 52.0 18.2 132 46-191 86-253 (326)
51 COG2133 Glucose/sorbosone dehy 97.5 0.006 1.3E-07 55.9 15.1 183 46-240 178-393 (399)
52 KOG4499 Ca2+-binding protein R 97.4 0.0092 2E-07 50.5 14.6 85 101-195 155-247 (310)
53 COG3211 PhoX Predicted phospha 97.4 0.0024 5.1E-08 60.2 11.9 85 40-124 412-520 (616)
54 PRK02888 nitrous-oxide reducta 97.2 0.013 2.9E-07 56.4 15.2 83 103-190 320-405 (635)
55 PRK02888 nitrous-oxide reducta 97.1 0.018 3.9E-07 55.5 15.0 62 159-233 321-392 (635)
56 KOG0291 WD40-repeat-containing 97.1 0.041 8.9E-07 53.4 16.8 165 43-254 349-522 (893)
57 PF01731 Arylesterase: Arylest 97.0 0.01 2.2E-07 42.5 9.3 32 158-189 53-84 (86)
58 smart00135 LY Low-density lipo 97.0 0.0024 5.2E-08 38.7 5.3 35 157-191 7-41 (43)
59 PF05096 Glu_cyclase_2: Glutam 96.9 0.13 2.7E-06 44.7 16.5 156 46-242 91-255 (264)
60 cd00200 WD40 WD40 domain, foun 96.9 0.21 4.5E-06 41.5 18.5 111 47-191 96-209 (289)
61 PF00058 Ldl_recept_b: Low-den 96.8 0.0059 1.3E-07 37.5 6.0 39 115-168 1-42 (42)
62 COG2133 Glucose/sorbosone dehy 96.8 0.023 5E-07 52.1 12.2 135 44-190 238-398 (399)
63 KOG1215 Low-density lipoprotei 96.7 0.029 6.2E-07 57.2 13.6 147 44-237 479-631 (877)
64 PF05096 Glu_cyclase_2: Glutam 96.7 0.11 2.4E-06 45.0 14.8 110 44-190 44-158 (264)
65 KOG1446 Histone H3 (Lys4) meth 96.6 0.47 1E-05 41.7 19.3 112 46-190 102-218 (311)
66 PF00058 Ldl_recept_b: Low-den 96.6 0.014 3.1E-07 35.8 6.4 41 171-225 1-42 (42)
67 COG3211 PhoX Predicted phospha 96.5 0.029 6.3E-07 53.1 10.5 129 101-233 414-572 (616)
68 PF02333 Phytase: Phytase; In 96.4 0.16 3.5E-06 46.4 14.9 125 43-191 154-292 (381)
69 KOG0266 WD40 repeat-containing 96.4 0.36 7.8E-06 45.4 17.9 113 47-193 206-322 (456)
70 TIGR03032 conserved hypothetic 96.4 0.36 7.9E-06 42.8 16.3 145 42-199 46-242 (335)
71 KOG1215 Low-density lipoprotei 96.3 0.07 1.5E-06 54.4 13.3 143 46-234 438-586 (877)
72 COG3204 Uncharacterized protei 96.2 0.14 3.1E-06 44.8 12.8 127 46-189 182-312 (316)
73 PF01731 Arylesterase: Arylest 96.2 0.033 7.2E-07 39.9 7.3 53 19-74 31-83 (86)
74 KOG0291 WD40-repeat-containing 96.1 0.59 1.3E-05 45.8 17.0 112 46-190 394-509 (893)
75 smart00135 LY Low-density lipo 96.0 0.021 4.5E-07 34.5 4.9 34 102-135 7-41 (43)
76 KOG1446 Histone H3 (Lys4) meth 95.8 0.93 2E-05 39.9 15.9 127 43-195 139-268 (311)
77 PF02333 Phytase: Phytase; In 95.8 0.23 5.1E-06 45.4 12.8 79 45-135 208-292 (381)
78 COG3823 Glutamine cyclotransfe 95.6 1.1 2.5E-05 37.5 17.2 172 44-242 45-253 (262)
79 cd00200 WD40 WD40 domain, foun 95.6 1.1 2.4E-05 37.1 19.7 111 46-191 11-125 (289)
80 TIGR02276 beta_rpt_yvtn 40-res 95.1 0.16 3.4E-06 30.5 6.5 42 54-112 1-42 (42)
81 PF13360 PQQ_2: PQQ-like domai 95.1 1.7 3.7E-05 36.2 18.4 111 51-193 32-144 (238)
82 PF14269 Arylsulfotran_2: Aryl 94.9 1.3 2.9E-05 39.3 14.4 133 46-195 145-295 (299)
83 KOG0266 WD40 repeat-containing 94.8 0.73 1.6E-05 43.4 13.1 108 104-242 204-316 (456)
84 TIGR03032 conserved hypothetic 94.5 0.42 9E-06 42.5 9.8 59 100-177 199-259 (335)
85 KOG0282 mRNA splicing factor [ 94.4 1.9 4.2E-05 40.1 14.3 133 46-194 301-467 (503)
86 TIGR02276 beta_rpt_yvtn 40-res 94.3 0.26 5.7E-06 29.4 6.1 26 168-193 1-26 (42)
87 KOG0279 G protein beta subunit 93.8 4.2 9E-05 35.5 16.0 114 47-192 66-183 (315)
88 PRK05137 tolB translocation pr 93.8 5.7 0.00012 37.0 17.3 72 108-195 294-372 (435)
89 KOG0286 G-protein beta subunit 93.6 4.7 0.0001 35.5 18.0 117 45-192 187-306 (343)
90 TIGR02800 propeller_TolB tol-p 93.6 5.7 0.00012 36.3 17.7 73 108-196 282-361 (417)
91 PF08662 eIF2A: Eukaryotic tra 93.4 3.9 8.4E-05 33.7 16.0 95 106-233 62-161 (194)
92 PRK11138 outer membrane biogen 93.3 6.4 0.00014 36.1 17.0 132 56-239 256-389 (394)
93 PF06739 SBBP: Beta-propeller 93.1 0.079 1.7E-06 31.7 2.1 20 104-123 13-32 (38)
94 PRK04792 tolB translocation pr 93.1 7.8 0.00017 36.4 20.2 73 107-195 309-388 (448)
95 KOG0263 Transcription initiati 93.0 3.8 8.2E-05 40.2 14.3 109 103-242 535-649 (707)
96 PTZ00421 coronin; Provisional 93.0 8.7 0.00019 36.7 19.6 115 47-194 78-203 (493)
97 PF06739 SBBP: Beta-propeller 92.8 0.11 2.5E-06 31.0 2.5 20 216-235 13-32 (38)
98 KOG0283 WD40 repeat-containing 92.8 5.5 0.00012 39.3 15.1 120 46-193 411-536 (712)
99 KOG0318 WD40 repeat stress pro 92.8 4.3 9.4E-05 38.4 13.7 75 105-193 445-521 (603)
100 KOG0272 U4/U6 small nuclear ri 92.8 4.6 0.0001 37.1 13.6 140 46-233 305-448 (459)
101 PRK04922 tolB translocation pr 92.7 8.4 0.00018 35.8 17.4 70 108-193 252-328 (433)
102 PF13360 PQQ_2: PQQ-like domai 92.3 5.8 0.00013 33.0 13.5 68 110-195 32-101 (238)
103 PRK01742 tolB translocation pr 92.2 9.8 0.00021 35.4 16.4 67 107-193 295-365 (429)
104 PRK04792 tolB translocation pr 92.0 11 0.00023 35.4 19.0 112 49-193 222-342 (448)
105 KOG0318 WD40 repeat stress pro 91.9 12 0.00025 35.6 15.7 109 104-242 406-515 (603)
106 COG4247 Phy 3-phytase (myo-ino 91.9 7.9 0.00017 33.6 15.1 176 31-228 135-336 (364)
107 KOG0285 Pleiotropic regulator 91.2 11 0.00024 34.1 14.9 118 42-193 149-269 (460)
108 KOG0772 Uncharacterized conser 91.1 4.3 9.2E-05 38.4 11.7 137 30-191 244-396 (641)
109 PRK02889 tolB translocation pr 90.9 13 0.00029 34.5 18.3 111 49-192 200-319 (427)
110 PF06433 Me-amine-dh_H: Methyl 90.7 13 0.00027 33.7 15.7 116 56-195 2-132 (342)
111 KOG0308 Conserved WD40 repeat- 90.7 14 0.00031 35.9 14.9 163 46-235 119-285 (735)
112 KOG0282 mRNA splicing factor [ 90.4 1.8 3.9E-05 40.3 8.6 135 52-233 222-360 (503)
113 PRK03629 tolB translocation pr 90.4 15 0.00033 34.2 19.3 72 108-195 247-325 (429)
114 KOG0293 WD40 repeat-containing 90.3 6 0.00013 36.4 11.6 98 104-233 313-413 (519)
115 PRK11138 outer membrane biogen 90.3 14 0.0003 33.9 14.6 74 51-135 66-141 (394)
116 KOG0263 Transcription initiati 90.2 12 0.00027 36.8 14.4 114 48-196 455-572 (707)
117 PRK04922 tolB translocation pr 90.1 16 0.00035 34.0 20.3 74 107-196 295-375 (433)
118 PF14517 Tachylectin: Tachylec 90.0 3.9 8.4E-05 34.8 9.7 162 46-242 35-204 (229)
119 PRK02889 tolB translocation pr 89.9 17 0.00036 33.9 19.7 72 108-195 288-366 (427)
120 KOG0286 G-protein beta subunit 89.7 14 0.0003 32.6 14.9 107 107-242 190-303 (343)
121 KOG0283 WD40 repeat-containing 89.4 19 0.00041 35.7 15.0 116 104-242 410-530 (712)
122 PTZ00420 coronin; Provisional 89.2 23 0.00049 34.5 16.5 121 46-193 76-201 (568)
123 KOG0315 G-protein beta subunit 89.2 14 0.0003 32.0 17.0 77 105-197 85-162 (311)
124 KOG0315 G-protein beta subunit 88.9 15 0.00031 31.9 16.6 157 46-242 125-288 (311)
125 KOG0772 Uncharacterized conser 88.9 13 0.00028 35.4 12.9 167 48-239 171-342 (641)
126 PRK03629 tolB translocation pr 88.7 20 0.00044 33.3 20.9 114 49-195 247-369 (429)
127 smart00284 OLF Olfactomedin-li 88.6 14 0.00029 32.1 12.2 82 49-135 78-163 (255)
128 PF07433 DUF1513: Protein of u 88.3 18 0.00039 32.2 16.9 117 109-239 56-187 (305)
129 TIGR02800 propeller_TolB tol-p 87.4 23 0.00049 32.3 17.7 70 108-193 238-314 (417)
130 KOG3950 Gamma/delta sarcoglyca 87.2 18 0.00039 31.0 16.7 174 40-233 83-277 (292)
131 KOG0271 Notchless-like WD40 re 87.0 25 0.00053 32.3 13.9 120 48-196 119-242 (480)
132 PRK05137 tolB translocation pr 86.7 27 0.00058 32.5 19.5 114 48-194 205-327 (435)
133 KOG2110 Uncharacterized conser 86.7 24 0.00053 32.0 14.1 72 107-192 177-251 (391)
134 KOG1274 WD40 repeat protein [G 86.7 28 0.00061 35.2 14.4 111 46-191 15-128 (933)
135 KOG0279 G protein beta subunit 86.5 22 0.00047 31.2 14.1 117 46-193 17-139 (315)
136 KOG0301 Phospholipase A2-activ 86.3 31 0.00067 33.9 14.2 68 104-189 180-249 (745)
137 PRK01742 tolB translocation pr 86.2 28 0.00061 32.3 18.0 113 48-193 207-328 (429)
138 KOG0640 mRNA cleavage stimulat 85.8 12 0.00025 33.4 10.3 115 48-192 176-294 (430)
139 KOG4378 Nuclear protein COP1 [ 85.7 14 0.00031 34.9 11.3 66 107-191 212-282 (673)
140 KOG0289 mRNA splicing factor [ 85.4 32 0.00069 32.1 15.6 69 107-192 351-422 (506)
141 PF14517 Tachylectin: Tachylec 85.2 12 0.00026 31.9 9.9 116 49-190 85-207 (229)
142 PLN00181 protein SPA1-RELATED; 85.1 46 0.00099 33.7 19.6 67 107-191 665-740 (793)
143 KOG0278 Serine/threonine kinas 84.1 27 0.00059 30.3 12.3 120 56-189 154-297 (334)
144 COG4247 Phy 3-phytase (myo-ino 83.9 28 0.00061 30.3 16.2 78 156-242 150-232 (364)
145 KOG3881 Uncharacterized conser 83.7 12 0.00027 34.1 9.7 78 105-196 204-284 (412)
146 KOG1274 WD40 repeat protein [G 83.3 24 0.00051 35.8 12.3 75 101-193 93-172 (933)
147 KOG4649 PQQ (pyrrolo-quinoline 83.1 31 0.00067 30.2 13.9 80 166-250 143-224 (354)
148 PF05694 SBP56: 56kDa selenium 83.0 6 0.00013 36.9 7.7 75 160-234 313-393 (461)
149 KOG2055 WD40 repeat protein [G 82.8 42 0.00092 31.5 14.6 115 109-253 309-426 (514)
150 KOG1539 WD repeat protein [Gen 82.8 43 0.00092 33.8 13.6 113 46-193 495-610 (910)
151 PF07433 DUF1513: Protein of u 82.7 35 0.00075 30.4 16.6 171 43-242 97-283 (305)
152 KOG0272 U4/U6 small nuclear ri 82.1 19 0.00041 33.3 10.3 108 45-186 346-457 (459)
153 PF05935 Arylsulfotrans: Aryls 81.5 50 0.0011 31.4 20.0 130 106-235 192-367 (477)
154 PF02191 OLF: Olfactomedin-lik 81.5 34 0.00074 29.5 12.5 121 49-191 73-205 (250)
155 TIGR03300 assembly_YfgL outer 81.4 41 0.00089 30.3 17.1 100 56-192 241-341 (377)
156 PTZ00421 coronin; Provisional 81.3 52 0.0011 31.4 20.1 70 48-133 129-198 (493)
157 PRK00178 tolB translocation pr 80.7 47 0.001 30.6 20.0 113 48-193 202-323 (430)
158 KOG0646 WD40 repeat protein [G 80.0 53 0.0011 30.8 13.5 154 48-242 85-245 (476)
159 PF14269 Arylsulfotran_2: Aryl 79.9 43 0.00094 29.7 19.4 119 103-234 143-278 (299)
160 PLN00181 protein SPA1-RELATED; 79.6 73 0.0016 32.2 19.8 110 48-191 536-650 (793)
161 KOG3567 Peptidylglycine alpha- 79.5 1.5 3.3E-05 40.7 2.6 35 101-135 464-498 (501)
162 PRK00178 tolB translocation pr 79.1 53 0.0011 30.3 20.8 73 108-196 291-370 (430)
163 COG3823 Glutamine cyclotransfe 78.8 9.3 0.0002 32.2 6.7 62 56-122 185-248 (262)
164 KOG2106 Uncharacterized conser 78.5 63 0.0014 30.8 16.8 120 46-196 331-453 (626)
165 PF15492 Nbas_N: Neuroblastoma 78.0 38 0.00082 29.7 10.5 79 162-242 47-125 (282)
166 KOG3881 Uncharacterized conser 77.6 51 0.0011 30.3 11.5 114 46-190 204-321 (412)
167 KOG2055 WD40 repeat protein [G 77.0 66 0.0014 30.2 13.8 33 155-188 479-511 (514)
168 PF08662 eIF2A: Eukaryotic tra 76.8 40 0.00087 27.6 15.4 113 47-193 62-183 (194)
169 KOG0285 Pleiotropic regulator 76.5 19 0.0004 32.8 8.4 82 101-199 149-233 (460)
170 PRK01029 tolB translocation pr 76.4 67 0.0014 30.0 16.4 72 108-195 331-409 (428)
171 KOG0641 WD40 repeat protein [G 75.8 50 0.0011 28.2 14.8 75 170-251 193-281 (350)
172 PTZ00420 coronin; Provisional 75.3 85 0.0018 30.6 20.1 72 47-135 128-199 (568)
173 COG5276 Uncharacterized conser 74.7 63 0.0014 28.9 11.3 62 110-187 264-327 (370)
174 KOG1407 WD40 repeat protein [F 74.4 59 0.0013 28.4 15.4 140 46-232 66-206 (313)
175 COG3292 Predicted periplasmic 74.1 33 0.00072 33.2 9.8 100 107-239 209-313 (671)
176 KOG0640 mRNA cleavage stimulat 72.8 35 0.00076 30.5 9.0 110 105-239 174-286 (430)
177 KOG2394 WD40 protein DMR-N9 [G 72.6 20 0.00044 34.2 8.0 93 105-225 292-384 (636)
178 COG4946 Uncharacterized protei 71.9 93 0.002 29.6 16.8 27 48-75 279-305 (668)
179 KOG0268 Sof1-like rRNA process 71.9 36 0.00077 31.0 9.0 115 48-193 191-306 (433)
180 PF05694 SBP56: 56kDa selenium 70.5 25 0.00054 32.9 8.0 75 104-178 312-393 (461)
181 PF07494 Reg_prop: Two compone 70.0 8.3 0.00018 20.2 3.0 19 216-234 5-23 (24)
182 KOG0299 U3 snoRNP-associated p 69.5 1E+02 0.0022 29.0 13.2 112 105-233 329-444 (479)
183 KOG0639 Transducin-like enhanc 69.4 1.1E+02 0.0024 29.3 11.9 57 162-233 513-570 (705)
184 KOG4378 Nuclear protein COP1 [ 68.8 27 0.00059 33.1 7.9 71 46-134 209-281 (673)
185 TIGR03300 assembly_YfgL outer 68.4 91 0.002 28.1 20.7 67 48-135 59-126 (377)
186 KOG0319 WD40-repeat-containing 68.2 1.3E+02 0.0029 29.9 14.3 114 50-196 25-142 (775)
187 KOG3567 Peptidylglycine alpha- 68.1 11 0.00023 35.4 5.1 35 156-191 464-498 (501)
188 KOG0310 Conserved WD40 repeat- 68.0 1.1E+02 0.0024 28.9 16.2 149 46-241 155-306 (487)
189 KOG0646 WD40 repeat protein [G 67.8 1.1E+02 0.0024 28.8 12.4 86 105-191 219-309 (476)
190 KOG0268 Sof1-like rRNA process 67.7 15 0.00032 33.4 5.8 111 46-187 231-343 (433)
191 KOG0293 WD40 repeat-containing 66.8 66 0.0014 29.9 9.7 114 44-192 312-428 (519)
192 TIGR02608 delta_60_rpt delta-6 66.5 9.1 0.0002 24.9 3.2 32 107-138 4-44 (55)
193 PRK04043 tolB translocation pr 65.5 1.2E+02 0.0025 28.3 18.0 70 109-194 193-270 (419)
194 PRK04043 tolB translocation pr 65.3 1.2E+02 0.0026 28.3 20.3 68 110-195 283-363 (419)
195 COG1520 FOG: WD40-like repeat 64.6 1.1E+02 0.0024 27.6 14.9 67 55-137 67-134 (370)
196 KOG0275 Conserved WD40 repeat- 62.8 1.2E+02 0.0026 27.4 14.0 122 104-242 349-475 (508)
197 KOG2096 WD40 repeat protein [G 62.5 44 0.00095 30.1 7.6 72 105-189 88-163 (420)
198 KOG0271 Notchless-like WD40 re 62.4 1.3E+02 0.0028 27.8 12.2 74 104-194 368-444 (480)
199 KOG1408 WD40 repeat protein [F 62.1 1.4E+02 0.003 30.0 11.4 112 47-190 599-714 (1080)
200 PF00930 DPPIV_N: Dipeptidyl p 61.3 27 0.00059 31.5 6.6 65 107-178 55-120 (353)
201 KOG0301 Phospholipase A2-activ 60.3 1.8E+02 0.004 28.8 12.7 109 45-190 180-289 (745)
202 KOG0284 Polyadenylation factor 59.1 1.2E+02 0.0025 28.2 9.9 110 46-189 182-294 (464)
203 KOG0292 Vesicle coat complex C 58.7 1.3E+02 0.0028 31.0 10.8 111 46-190 52-166 (1202)
204 COG1520 FOG: WD40-like repeat 58.7 1.4E+02 0.003 26.9 11.5 75 110-199 64-140 (370)
205 KOG1310 WD40 repeat protein [G 58.4 92 0.002 30.2 9.3 118 107-242 54-176 (758)
206 KOG1273 WD40 repeat protein [G 58.4 1.4E+02 0.0031 26.9 15.0 150 46-240 66-221 (405)
207 KOG0275 Conserved WD40 repeat- 58.3 1.4E+02 0.0031 26.9 14.5 80 159-242 349-430 (508)
208 KOG0270 WD40 repeat-containing 55.4 1.8E+02 0.0039 27.2 11.1 28 47-74 332-359 (463)
209 KOG0284 Polyadenylation factor 54.9 1.8E+02 0.0039 27.1 10.3 73 105-194 182-257 (464)
210 KOG0316 Conserved WD40 repeat- 54.5 1.4E+02 0.0031 25.8 10.6 42 100-141 179-224 (307)
211 KOG0292 Vesicle coat complex C 54.4 2.5E+02 0.0055 29.1 12.0 35 101-135 248-282 (1202)
212 PRK13684 Ycf48-like protein; P 54.3 1.6E+02 0.0035 26.3 20.4 41 27-71 30-70 (334)
213 KOG1408 WD40 repeat protein [F 54.1 1.2E+02 0.0026 30.4 9.6 106 107-233 600-711 (1080)
214 KOG2919 Guanine nucleotide-bin 53.4 1.8E+02 0.0038 26.4 10.8 29 44-74 158-186 (406)
215 TIGR03656 IsdC heme uptake pro 53.3 53 0.0012 27.7 6.4 63 1-65 1-74 (217)
216 PF05935 Arylsulfotrans: Aryls 52.6 1.1E+02 0.0024 29.1 9.3 41 46-89 272-312 (477)
217 KOG0289 mRNA splicing factor [ 51.9 2.1E+02 0.0045 26.9 13.8 109 47-188 350-461 (506)
218 KOG0643 Translation initiation 51.9 1.7E+02 0.0037 25.8 11.1 114 108-253 15-131 (327)
219 KOG1407 WD40 repeat protein [F 51.6 1.7E+02 0.0037 25.7 11.2 27 105-131 149-175 (313)
220 COG3490 Uncharacterized protei 50.8 1.8E+02 0.004 25.9 14.5 103 106-235 70-181 (366)
221 PF00400 WD40: WD domain, G-be 50.7 43 0.00093 18.8 4.1 28 104-131 12-39 (39)
222 COG4946 Uncharacterized protei 49.8 2.4E+02 0.0052 27.0 15.9 16 172-187 470-485 (668)
223 COG5276 Uncharacterized conser 49.8 1.9E+02 0.0042 25.9 16.9 58 107-181 132-192 (370)
224 KOG0313 Microtubule binding pr 49.5 2.1E+02 0.0047 26.3 11.0 111 46-191 262-378 (423)
225 PRK13861 type IV secretion sys 49.2 1.5E+02 0.0032 26.3 8.9 29 55-85 40-68 (292)
226 PF07202 Tcp10_C: T-complex pr 49.1 1.5E+02 0.0032 24.3 15.2 17 26-42 4-20 (179)
227 COG4880 Secreted protein conta 48.9 2.4E+02 0.0052 26.7 12.1 19 114-134 110-129 (603)
228 cd00028 B_lectin Bulb-type man 48.8 1.1E+02 0.0023 22.6 8.0 23 105-127 55-77 (116)
229 smart00108 B_lectin Bulb-type 48.6 1.1E+02 0.0023 22.5 8.5 55 105-183 54-108 (114)
230 PF08553 VID27: VID27 cytoplas 48.3 1.7E+02 0.0038 29.8 10.1 28 107-135 581-608 (794)
231 KOG2111 Uncharacterized conser 45.7 2.3E+02 0.0049 25.5 17.3 78 101-192 179-259 (346)
232 KOG2919 Guanine nucleotide-bin 45.6 2.3E+02 0.0051 25.6 11.3 77 102-191 157-240 (406)
233 KOG0641 WD40 repeat protein [G 45.6 2E+02 0.0042 24.7 12.2 69 106-191 234-305 (350)
234 KOG0649 WD40 repeat protein [G 44.9 1.1E+02 0.0023 26.6 7.0 39 158-197 114-152 (325)
235 KOG1517 Guanine nucleotide bin 44.5 4.2E+02 0.009 28.2 15.9 112 108-236 1168-1288(1387)
236 KOG0281 Beta-TrCP (transducin 44.5 1.4E+02 0.0031 27.2 8.0 99 55-191 328-430 (499)
237 KOG0973 Histone transcription 42.9 1.9E+02 0.0042 29.9 9.5 77 47-140 132-211 (942)
238 PRK12694 flgG flagellar basal 42.9 1.4E+02 0.0031 25.8 7.8 69 159-232 90-160 (260)
239 KOG1273 WD40 repeat protein [G 42.3 2.6E+02 0.0057 25.3 13.1 72 47-135 26-98 (405)
240 PRK01029 tolB translocation pr 41.8 2.9E+02 0.0063 25.7 20.9 74 107-196 284-366 (428)
241 KOG2106 Uncharacterized conser 41.5 3.3E+02 0.0072 26.2 17.7 40 28-72 356-395 (626)
242 KOG1445 Tumor-specific antigen 40.7 3.8E+02 0.0083 26.7 12.6 55 123-194 698-755 (1012)
243 KOG0306 WD40-repeat-containing 40.5 4.1E+02 0.0088 27.0 14.7 75 105-196 594-671 (888)
244 PF15416 DUF4623: Domain of un 39.9 2.3E+02 0.0049 25.9 8.4 80 44-133 182-271 (442)
245 PRK12689 flgF flagellar basal 39.5 1.2E+02 0.0026 26.2 6.8 67 159-233 82-155 (253)
246 PF08553 VID27: VID27 cytoplas 38.9 4.5E+02 0.0097 26.9 14.5 57 162-235 581-638 (794)
247 KOG0306 WD40-repeat-containing 38.6 4.4E+02 0.0095 26.7 14.0 96 107-233 554-652 (888)
248 PF00930 DPPIV_N: Dipeptidyl p 38.3 2.9E+02 0.0064 24.7 16.1 91 117-236 251-348 (353)
249 KOG0918 Selenium-binding prote 37.4 2E+02 0.0044 26.8 7.9 27 48-74 315-341 (476)
250 KOG1539 WD repeat protein [Gen 37.0 4.8E+02 0.01 26.7 12.5 30 106-135 496-525 (910)
251 KOG0303 Actin-binding protein 36.2 3.6E+02 0.0078 25.1 12.9 114 48-192 177-297 (472)
252 KOG0310 Conserved WD40 repeat- 35.9 3.9E+02 0.0084 25.4 12.8 68 108-191 115-186 (487)
253 PRK12691 flgG flagellar basal 35.7 2.1E+02 0.0046 24.7 7.7 69 159-232 90-160 (262)
254 cd00216 PQQ_DH Dehydrogenases 35.5 3.9E+02 0.0085 25.3 14.4 52 171-236 407-458 (488)
255 KOG4328 WD40 protein [Function 35.4 3.9E+02 0.0085 25.3 11.6 83 49-140 374-457 (498)
256 KOG0321 WD40 repeat-containing 35.1 4.6E+02 0.01 26.0 11.9 80 159-242 219-299 (720)
257 KOG0295 WD40 repeat-containing 35.1 3.2E+02 0.0069 25.1 8.7 65 112-193 301-368 (406)
258 PRK12817 flgG flagellar basal 34.9 1.8E+02 0.0039 25.1 7.2 32 159-193 86-117 (260)
259 KOG0278 Serine/threonine kinas 34.9 3.1E+02 0.0068 24.0 10.8 65 163-241 229-296 (334)
260 KOG0276 Vesicle coat complex C 34.5 4.7E+02 0.01 26.0 11.8 73 102-190 96-172 (794)
261 KOG4731 Protein predicted to b 34.3 4.1E+02 0.0089 25.2 12.7 28 43-74 38-65 (512)
262 PF13570 PQQ_3: PQQ-like domai 34.1 91 0.002 18.0 3.7 24 48-74 15-38 (40)
263 KOG0269 WD40 repeat-containing 33.8 4.8E+02 0.01 26.4 10.3 69 48-132 137-206 (839)
264 KOG0650 WD40 repeat nucleolar 33.2 2E+02 0.0043 28.2 7.4 66 159-240 567-633 (733)
265 KOG0321 WD40 repeat-containing 33.0 4.9E+02 0.011 25.8 10.0 138 47-191 147-303 (720)
266 smart00108 B_lectin Bulb-type 32.7 2E+02 0.0043 21.0 7.6 52 161-237 55-106 (114)
267 KOG0322 G-protein beta subunit 32.6 1.2E+02 0.0025 26.7 5.4 71 103-187 249-321 (323)
268 PRK12816 flgG flagellar basal 31.5 2E+02 0.0043 25.0 6.9 69 159-232 90-162 (264)
269 PRK12818 flgG flagellar basal 31.2 1.8E+02 0.0038 25.2 6.5 20 43-63 88-107 (256)
270 PRK12636 flgG flagellar basal 31.0 2.6E+02 0.0057 24.2 7.6 67 159-232 89-162 (263)
271 PF10647 Gmad1: Lipoprotein Lp 30.9 3.4E+02 0.0074 23.2 15.4 108 46-186 25-141 (253)
272 TIGR02488 flgG_G_neg flagellar 30.8 2.5E+02 0.0055 24.2 7.4 69 159-232 88-158 (259)
273 KOG0294 WD40 repeat-containing 30.5 4.1E+02 0.0089 24.0 15.5 70 106-193 130-201 (362)
274 KOG0281 Beta-TrCP (transducin 30.4 2.3E+02 0.005 26.0 7.0 61 112-191 327-390 (499)
275 KOG2110 Uncharacterized conser 30.0 4.4E+02 0.0096 24.2 10.0 71 48-132 177-247 (391)
276 TIGR03054 photo_alph_chp1 puta 29.8 2.7E+02 0.0058 21.7 9.9 73 56-131 40-121 (135)
277 PF13970 DUF4221: Domain of un 29.4 3.9E+02 0.0084 23.7 8.7 85 40-135 37-125 (333)
278 PF12273 RCR: Chitin synthesis 29.2 34 0.00073 26.2 1.5 8 5-12 2-9 (130)
279 PF11768 DUF3312: Protein of u 29.2 4E+02 0.0087 25.9 8.8 70 105-191 261-331 (545)
280 PF01011 PQQ: PQQ enzyme repea 29.0 1.2E+02 0.0026 17.4 4.1 18 172-190 2-19 (38)
281 PRK12817 flgG flagellar basal 29.0 3.5E+02 0.0075 23.4 8.0 78 43-121 84-166 (260)
282 PF03032 Brevenin: Brevenin/es 28.8 35 0.00075 21.3 1.2 19 1-22 3-21 (46)
283 PRK12693 flgG flagellar basal 28.5 3.2E+02 0.007 23.5 7.7 68 159-232 90-160 (261)
284 KOG0639 Transducin-like enhanc 28.3 2.5E+02 0.0053 27.1 7.1 68 107-191 513-583 (705)
285 KOG0300 WD40 repeat-containing 28.1 4.6E+02 0.0099 23.8 8.5 62 57-135 368-430 (481)
286 KOG1538 Uncharacterized conser 27.9 6.4E+02 0.014 25.4 13.6 135 46-199 14-172 (1081)
287 PRK13684 Ycf48-like protein; P 27.8 4.4E+02 0.0096 23.5 16.9 31 159-191 215-245 (334)
288 PRK12690 flgF flagellar basal 27.3 2.4E+02 0.0053 24.1 6.6 69 159-231 76-148 (238)
289 PF14870 PSII_BNR: Photosynthe 27.3 4.5E+02 0.0097 23.4 19.0 81 159-242 187-268 (302)
290 KOG2096 WD40 repeat protein [G 26.7 4.9E+02 0.011 23.6 16.1 32 43-74 131-162 (420)
291 PRK02710 plastocyanin; Provisi 26.5 2.7E+02 0.0059 20.7 6.4 15 44-59 43-57 (119)
292 PF11768 DUF3312: Protein of u 26.1 4.6E+02 0.0099 25.5 8.6 28 105-132 301-328 (545)
293 KOG2048 WD40 repeat protein [G 26.1 6.6E+02 0.014 25.0 15.4 40 157-197 474-513 (691)
294 KOG0645 WD40 repeat protein [G 26.0 4.6E+02 0.01 23.2 14.6 118 46-189 16-135 (312)
295 KOG0265 U5 snRNP-specific prot 25.6 4.9E+02 0.011 23.3 9.0 28 108-135 52-79 (338)
296 PRK13616 lipoprotein LpqB; Pro 25.6 6.5E+02 0.014 24.7 17.1 66 161-241 499-565 (591)
297 KOG0973 Histone transcription 25.4 7.9E+02 0.017 25.7 13.2 68 106-190 132-202 (942)
298 KOG4649 PQQ (pyrrolo-quinoline 25.2 4.8E+02 0.01 23.1 12.5 70 110-191 142-219 (354)
299 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.1 6.2E+02 0.013 24.3 13.0 106 56-194 69-194 (527)
300 PF14339 DUF4394: Domain of un 24.7 4.5E+02 0.0097 22.6 8.1 65 163-237 31-96 (236)
301 PF14870 PSII_BNR: Photosynthe 24.7 5E+02 0.011 23.1 14.2 27 216-242 187-213 (302)
302 COG4222 Uncharacterized protei 24.5 5.8E+02 0.012 23.7 9.5 57 118-175 159-216 (391)
303 KOG0264 Nucleosome remodeling 24.3 5.9E+02 0.013 23.8 10.5 113 48-190 231-348 (422)
304 COG1750 Archaeal serine protea 24.0 1.6E+02 0.0035 28.6 5.2 24 46-69 52-75 (579)
305 KOG0918 Selenium-binding prote 23.1 3.6E+02 0.0077 25.2 7.0 30 162-191 315-344 (476)
306 KOG0645 WD40 repeat protein [G 22.9 5.3E+02 0.012 22.8 17.8 73 104-189 106-180 (312)
307 PRK12690 flgF flagellar basal 22.9 4.8E+02 0.01 22.3 7.6 19 103-121 75-93 (238)
308 PF08309 LVIVD: LVIVD repeat; 22.8 1.8E+02 0.0039 17.5 3.6 26 46-74 3-28 (42)
309 PRK12694 flgG flagellar basal 22.7 2.6E+02 0.0056 24.1 6.0 23 43-67 88-110 (260)
310 PRK12689 flgF flagellar basal 22.6 4.3E+02 0.0092 22.8 7.3 20 43-63 80-99 (253)
311 KOG4441 Proteins containing BT 22.6 7.3E+02 0.016 24.2 14.4 135 48-233 326-482 (571)
312 KOG3914 WD repeat protein WDR4 21.9 6.4E+02 0.014 23.3 11.8 72 105-193 109-185 (390)
313 KOG3545 Olfactomedin and relat 21.6 5.3E+02 0.012 22.3 9.5 77 55-134 76-156 (249)
314 cd00028 B_lectin Bulb-type man 21.2 3.4E+02 0.0073 19.9 7.4 55 161-240 56-111 (116)
315 PRK12816 flgG flagellar basal 20.9 3.5E+02 0.0075 23.5 6.4 20 43-63 88-107 (264)
316 KOG4283 Transcription-coupled 20.7 6.2E+02 0.014 22.7 14.6 149 46-197 190-342 (397)
317 KOG1538 Uncharacterized conser 20.6 8.9E+02 0.019 24.5 9.9 75 105-193 134-215 (1081)
318 KOG1445 Tumor-specific antigen 20.4 8.8E+02 0.019 24.3 9.9 77 162-252 681-759 (1012)
319 KOG1034 Transcriptional repres 20.3 6.6E+02 0.014 22.9 13.0 99 107-233 95-198 (385)
320 PF01453 B_lectin: D-mannose b 20.1 3.7E+02 0.008 19.8 7.4 57 107-185 21-77 (114)
321 PF12120 Arr-ms: Rifampin ADP- 20.0 39 0.00084 24.5 0.2 38 226-263 54-92 (100)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=7.4e-22 Score=199.64 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=147.9
Q ss_pred cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcC-CcccCCCCCcccccCCCCceEEEcCCCC-EEE
Q 024317 42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD-GVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV 119 (269)
Q Consensus 42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~-g~~g~~dg~~~~~~~~~P~giavd~~G~-lyV 119 (269)
..|..|.+|+++..++++||+|+++|||+++| .+|.+...++. |..|..+|....+.|+.|.||++|++++ |||
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d----~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTD----LDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEe----CCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 35789999999766799999999999999995 46776666665 6667777777778999999999999876 999
Q ss_pred EeCCCCEEEEEeCCc-c-eEEecCCCCCCCCCCC-ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317 120 ADKSNHVIRKITNLG-V-TTIAGGGSKKEGRADG-PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS 196 (269)
Q Consensus 120 aD~~n~~I~~~~~~g-~-~~~~g~~~~~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~ 196 (269)
+|..|++|++++..+ . .++++.+..+....++ ......|+.|++|+++++++.|||+|.++++|++++.....+..+
T Consensus 641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 999999999999754 4 7888765544333222 122345899999999997799999999999999999988776655
Q ss_pred cccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcC-CCCccccc
Q 024317 197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH-TGRLDPPL 242 (269)
Q Consensus 197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~-~g~~~~~~ 242 (269)
...+..............+..|.||+++++|. |||+|. +++++..+
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D 768 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD 768 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 43321111000011122567899999999985 999994 46665444
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=2.5e-20 Score=188.65 Aligned_cols=189 Identities=18% Similarity=0.290 Sum_probs=140.7
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCC-cccccCCCCceEEEcCCCC-EEEEe
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGE-PGSARFDKPKSFAVDMKGN-IYVAD 121 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~-~~~~~~~~P~giavd~~G~-lyVaD 121 (269)
++.|++|++++.++.+||+|.++|+|+++|. .+|.+.++.|.|.....++. .....|..|.||+++++|. |||+|
T Consensus 682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~---~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI---SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred cCCCeEEEEecCCCeEEEEECCCCeEEEEEC---CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE
Confidence 7899999998768999999999999999984 57788888876643322332 2345789999999999987 99999
Q ss_pred CCCCEEEEEeCCc-c-eEEecCCC------CCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 122 KSNHVIRKITNLG-V-TTIAGGGS------KKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 122 ~~n~~I~~~~~~g-~-~~~~g~~~------~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
..+++|++++.+. . ..+++... ..++..++....+.|..|.||+++++ |+|||+|..|++|++|+.++..+
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeE
Confidence 9999999999764 3 44443211 12233344445567899999999997 88999999999999999988766
Q ss_pred EEecccC---ccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccc
Q 024317 194 SKSSQSG---SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDP 240 (269)
Q Consensus 194 ~~~~~~g---~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~ 240 (269)
......| +..|. .....+..|.||+++++|++||+|. +++++.
T Consensus 838 ~tiaG~G~~G~~dG~----~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 838 TTLAGTGKAGFKDGK----ALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred EEEeccCCcCCCCCc----ccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 5544332 11111 1223568899999999999999994 455443
No 3
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.80 E-value=3.2e-18 Score=166.92 Aligned_cols=213 Identities=20% Similarity=0.217 Sum_probs=161.8
Q ss_pred eecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCC--CCCccEEEEEcCCc------ccCCCCC
Q 024317 26 LLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL--SEESVVKRLAGDGV------QGYSDGE 97 (269)
Q Consensus 26 ~~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~--~~~g~~~~~~g~g~------~g~~dg~ 97 (269)
.++++|+..+.+.-+...-.+-+-||++|-+|.|||+|..+++|+++..-. +..+...+++|.|. ..++||.
T Consensus 388 RI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGa 467 (1899)
T KOG4659|consen 388 RISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGA 467 (1899)
T ss_pred eecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcch
Confidence 466777777766544444556788999999999999999999999996311 34567889999886 3366765
Q ss_pred c-ccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCC--CCCCC--ccccccccCceEEEEeCCCC
Q 024317 98 P-GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKE--GRADG--PAQNASFSNDFELTFVPHIC 171 (269)
Q Consensus 98 ~-~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~--~~~~~--~~~~~~l~~P~gia~~~~~g 171 (269)
. ..++|.+|.||++|++|+||++|. .+|+++|.+|. +++.|...... -.+++ ...+-+|.+|+.||++|-.+
T Consensus 468 lA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdn 545 (1899)
T KOG4659|consen 468 LAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDN 545 (1899)
T ss_pred hcccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCC
Confidence 4 479999999999999999999995 59999999999 88888643321 11222 34456789999999999889
Q ss_pred EEEEEECCCCeEEEEECCCCeEEEecccCc--cCC---CcccceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317 172 ALLISDHGNQLIRQINLKPEDCSKSSQSGS--ALG---AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL 242 (269)
Q Consensus 172 ~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~--~~g---~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~ 242 (269)
.|||.| ++.|++++.+.......+.+-. ..+ .....+.+..+..+..|++..+|.|||++.+++.....
T Consensus 546 sl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrv 619 (1899)
T KOG4659|consen 546 SLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRV 619 (1899)
T ss_pred eEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhhe
Confidence 999999 4899999999988866664410 001 11123455667788999999999999999887666555
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.70 E-value=7.4e-16 Score=132.64 Aligned_cols=166 Identities=22% Similarity=0.234 Sum_probs=112.7
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC-
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN- 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n- 124 (269)
.|.|+++...++.+||++....+++ |+ .++++..+...-. ....+..|+++++|++|+|||+|...
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~~~~~~--d~---~~g~~~~~~~~~~--------~~~~~~~~ND~~vd~~G~ly~t~~~~~ 107 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSGGIAVV--DP---DTGKVTVLADLPD--------GGVPFNRPNDVAVDPDGNLYVTDSGGG 107 (246)
T ss_dssp SEEEEEEECTTSEEEEEETTCEEEE--ET---TTTEEEEEEEEET--------TCSCTEEEEEEEE-TTS-EEEEEECCB
T ss_pred CCceEEEEccCCEEEEEEcCceEEE--ec---CCCcEEEEeeccC--------CCcccCCCceEEEcCCCCEEEEecCCC
Confidence 3888888635788899986554444 53 4666666653200 11257899999999999999999754
Q ss_pred -------CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe--EE
Q 024317 125 -------HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED--CS 194 (269)
Q Consensus 125 -------~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~--~~ 194 (269)
++|.+++++++ ..+.. .+..|+||++++++..|||+|+.+++|++++.+... ..
T Consensus 108 ~~~~~~~g~v~~~~~~~~~~~~~~----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~ 171 (246)
T PF08450_consen 108 GASGIDPGSVYRIDPDGKVTVVAD----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS 171 (246)
T ss_dssp CTTCGGSEEEEEEETTSEEEEEEE----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred ccccccccceEEECCCCeEEEEec----------------CcccccceEECCcchheeecccccceeEEEecccccccee
Confidence 57999999977 44432 278899999999977899999999999999986432 21
Q ss_pred ---EecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc-c-cccccccCC
Q 024317 195 ---KSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL-Q-HDMEALPNQ 252 (269)
Q Consensus 195 ---~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~-~-~~~~~~~~~ 252 (269)
.+... . + ....|.|+++|.+|+|||++. .++++... + .....++.|
T Consensus 172 ~~~~~~~~--~-~---------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 172 NRRVFIDF--P-G---------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEEEEE---S-S---------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred eeeeEEEc--C-C---------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC
Confidence 11111 0 1 113599999999999999994 66666555 2 233444444
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.59 E-value=1.4e-13 Score=118.43 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=106.3
Q ss_pred CCCCcceEEEecCCCeEEEEeCCC--------CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSR--------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK 114 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~--------~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~ 114 (269)
.+..|.+++++ .+|++||+|... ++|++++ .++++.... ..+..|+||+++++
T Consensus 84 ~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~----~~~~~~~~~--------------~~~~~pNGi~~s~d 144 (246)
T PF08450_consen 84 PFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRID----PDGKVTVVA--------------DGLGFPNGIAFSPD 144 (246)
T ss_dssp CTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEE----TTSEEEEEE--------------EEESSEEEEEEETT
T ss_pred ccCCCceEEEc-CCCCEEEEecCCCccccccccceEEEC----CCCeEEEEe--------------cCcccccceEECCc
Confidence 67899999996 589999999755 5688885 446666654 24779999999999
Q ss_pred CC-EEEEeCCCCEEEEEeCCcc-------eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317 115 GN-IYVADKSNHVIRKITNLGV-------TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI 186 (269)
Q Consensus 115 G~-lyVaD~~n~~I~~~~~~g~-------~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~ 186 (269)
|+ |||+|+.+++|++++.+.. ..++.... ....|.|+++|.+ |+|||++..+++|+++
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------~~g~pDG~~vD~~-G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-------------GPGYPDGLAVDSD-GNLWVADWGGGRIVVF 210 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-------------SSCEEEEEEEBTT-S-EEEEEETTTEEEEE
T ss_pred chheeecccccceeEEEeccccccceeeeeeEEEcCC-------------CCcCCCcceEcCC-CCEEEEEcCCCEEEEE
Confidence 97 9999999999999986421 22222110 1235999999987 9999999999999999
Q ss_pred ECCCCeEEEecccCccCCCcccceeeeeccceeeEEEe-cC-CcEEEEc
Q 024317 187 NLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIG-FV-ARPYIIR 233 (269)
Q Consensus 187 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d-~~-g~lyVad 233 (269)
+++|..+.....+ ...|..+|+. ++ ..|||+.
T Consensus 211 ~p~G~~~~~i~~p---------------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 211 DPDGKLLREIELP---------------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ETTSCEEEEEE-S---------------SSSEEEEEEESTTSSEEEEEE
T ss_pred CCCccEEEEEcCC---------------CCCEEEEEEECCCCCEEEEEe
Confidence 9998876655433 1458889994 34 5899985
No 6
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.57 E-value=7.3e-14 Score=137.01 Aligned_cols=189 Identities=15% Similarity=0.148 Sum_probs=137.2
Q ss_pred cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCC----CCC--cccccCCCCceEEEcC-C
Q 024317 42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYS----DGE--PGSARFDKPKSFAVDM-K 114 (269)
Q Consensus 42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~----dg~--~~~~~~~~P~giavd~-~ 114 (269)
..+.+|.||+++ +.|.+|++| ..+|.++ +.+|.+.+++|.-.-... ++. ..+.++.+|..+|++| +
T Consensus 472 A~L~~PkGIa~d-k~g~lYfaD--~t~IR~i----D~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmd 544 (1899)
T KOG4659|consen 472 AQLIFPKGIAFD-KMGNLYFAD--GTRIRVI----DTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMD 544 (1899)
T ss_pred ceeccCCceeEc-cCCcEEEec--ccEEEEe----ccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCC
Confidence 368899999995 899999999 5789999 689999999986321111 121 2457899999999999 7
Q ss_pred CCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCC------CccccccccCceEEEEeCCCCEEEEEECCCC---eEE
Q 024317 115 GNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRAD------GPAQNASFSNDFELTFVPHICALLISDHGNQ---LIR 184 (269)
Q Consensus 115 G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~------~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~---~I~ 184 (269)
+.|||.| +|.|.++++++. ..++|++.- |..++ ..+.-..+..|..|++.++ |.|||+++... ||+
T Consensus 545 nsl~Vld--~nvvlrit~~~rV~Ii~GrP~h-C~~a~~t~~~skla~H~tl~~~r~Iavg~~-G~lyvaEsD~rriNrvr 620 (1899)
T KOG4659|consen 545 NSLLVLD--TNVVLRITVVHRVRIILGRPTH-CDLANATSSASKLADHRTLLIQRDIAVGTD-GALYVAESDGRRINRVR 620 (1899)
T ss_pred CeEEEee--cceEEEEccCccEEEEcCCccc-cccCCCchhhhhhhhhhhhhhhhceeecCC-ceEEEEeccchhhhheE
Confidence 7799999 789999999999 777776543 22221 1222335677899999998 99999999765 567
Q ss_pred EEECCCCeEEEecccCccC----------CCcccceeeeeccceeeEEEecCCcEEEEcCC-CCcccc
Q 024317 185 QINLKPEDCSKSSQSGSAL----------GAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT-GRLDPP 241 (269)
Q Consensus 185 ~~~~~~~~~~~~~~~g~~~----------g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~-g~~~~~ 241 (269)
++..+|.+....+....=. ......+..+.+..|..+|+.++|.+||||.. -|++.-
T Consensus 621 ~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~V 688 (1899)
T KOG4659|consen 621 KLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKV 688 (1899)
T ss_pred EeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhh
Confidence 8888886665555331100 11222245567899999999999999999954 444433
No 7
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.1e-11 Score=109.74 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=110.0
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCc--------------------c--cCCCCCc------
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV--------------------Q--GYSDGEP------ 98 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~--------------------~--g~~dg~~------ 98 (269)
.+|..+++..+.||++|..+++|++++. .+|....+.-.+. . ....+..
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~---~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDP---ETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecC---CcCceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEecc
Confidence 4444456777889999999999999974 2354444332110 0 0011111
Q ss_pred --ccccCCCCceEEEcCCCCEEEEeCC-----------CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEE
Q 024317 99 --GSARFDKPKSFAVDMKGNIYVADKS-----------NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFEL 164 (269)
Q Consensus 99 --~~~~~~~P~giavd~~G~lyVaD~~-----------n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gi 164 (269)
...+.++|++..++++|.+||+|.. ..+++++++.|. ..+... .+..||||
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~---------------~~~~~NGl 168 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD---------------DLTIPNGL 168 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC---------------cEEecCce
Confidence 1345789999999999999999987 246888888776 444321 27789999
Q ss_pred EEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317 165 TFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 165 a~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
|++|++..+|++|+..++|++++.+..... ..+..........-..|.|+++|.+|++|++...
T Consensus 169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~ 232 (307)
T COG3386 169 AFSPDGKTLYVADTPANRIHRYDLDPATGP-------IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW 232 (307)
T ss_pred EECCCCCEEEEEeCCCCeEEEEecCcccCc-------cCCcceEEEccCCCCCCCceEEeCCCCEEEeccc
Confidence 999997799999999999999998741110 0011101111112366999999999999976644
No 8
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.37 E-value=8.2e-11 Score=107.33 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=108.3
Q ss_pred CcEEEEEecCccCCCCcceEEEecCCCeEEEEeCC------------CCEEEEEecCCCCCccE---EEEEcCCcccCCC
Q 024317 31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSS------------RSAFYTLSFPLSEESVV---KRLAGDGVQGYSD 95 (269)
Q Consensus 31 g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~------------~~~I~~~dl~~~~~g~~---~~~~g~g~~g~~d 95 (269)
|+.++.+++.+ .+..|.+|+++ .+|+|||++.. ..||++++.. +.+|+. +.++
T Consensus 1 Gf~~~l~A~~p-~~~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~-dgdG~~d~~~vfa--------- 68 (367)
T TIGR02604 1 GFKVTLFAAEP-LLRNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDA-DGDGKYDKSNVFA--------- 68 (367)
T ss_pred CcEEEEEECCC-ccCCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcC-CCCCCcceeEEee---------
Confidence 45667776543 37899999995 68999999852 2488888631 334543 2332
Q ss_pred CCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEE-eCCc------c-eEEec-CCCCCCCCCCCccccccccCceEEEE
Q 024317 96 GEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI-TNLG------V-TTIAG-GGSKKEGRADGPAQNASFSNDFELTF 166 (269)
Q Consensus 96 g~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~-~~~g------~-~~~~g-~~~~~~~~~~~~~~~~~l~~P~gia~ 166 (269)
..+..|+||++.++| |||++. .+|+++ +.++ + +.+.. .+... ......|+++++
T Consensus 69 -----~~l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~---------~~~~~~~~~l~~ 131 (367)
T TIGR02604 69 -----EELSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQI---------NNHHHSLNSLAW 131 (367)
T ss_pred -----cCCCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCC---------CcccccccCceE
Confidence 236799999999888 999984 478877 3332 3 33332 11100 001355899999
Q ss_pred eCCCCEEEEEECCC-------------------CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC
Q 024317 167 VPHICALLISDHGN-------------------QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA 227 (269)
Q Consensus 167 ~~~~g~LyVaD~~n-------------------~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g 227 (269)
.++ |.|||++..+ +.|+++++++......+. .+..|.|+++|++|
T Consensus 132 gpD-G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~---------------G~rnp~Gl~~d~~G 195 (367)
T TIGR02604 132 GPD-GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH---------------GFQNPYGHSVDSWG 195 (367)
T ss_pred CCC-CCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec---------------CcCCCccceECCCC
Confidence 998 8999988832 457777777765443321 24679999999999
Q ss_pred cEEEEcCCC
Q 024317 228 RPYIIRHTG 236 (269)
Q Consensus 228 ~lyVad~~g 236 (269)
++|++|+..
T Consensus 196 ~l~~tdn~~ 204 (367)
T TIGR02604 196 DVFFCDNDD 204 (367)
T ss_pred CEEEEccCC
Confidence 999999743
No 9
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=103.27 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=106.1
Q ss_pred CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
..|.||+++...|++||+|..-+ ++++ ++.|........ ......+...+++.|+++|.+|++|+..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V----~p~g~~a~~l~~--------~~~G~~~kf~N~ldI~~~g~vyFTDSSs 181 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKV----GPEGGLAELLAD--------EAEGKPFKFLNDLDIDPEGVVYFTDSSS 181 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEE----CCCCCcceeccc--------cccCeeeeecCceeEcCCCeEEEecccc
Confidence 47999999876679999997443 6677 445443222211 1112356788999999999999999742
Q ss_pred -----------------CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEE
Q 024317 125 -----------------HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQ 185 (269)
Q Consensus 125 -----------------~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~ 185 (269)
+|+.++|+..+ +.+. ..|..|+||++++++..+.++++...||++
T Consensus 182 k~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl----------------d~L~F~NGlaLS~d~sfvl~~Et~~~ri~r 245 (376)
T KOG1520|consen 182 KYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL----------------DGLYFPNGLALSPDGSFVLVAETTTARIKR 245 (376)
T ss_pred ccchhheEEeeecCCCccceEEecCcccchhhhh----------------hcccccccccCCCCCCEEEEEeeccceeee
Confidence 34444444333 1221 248889999999999999999999999999
Q ss_pred EECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317 186 INLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 186 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
+...+..... ...++.+ ....|..|-.+++|+.||+=+.
T Consensus 246 ywi~g~k~gt----------~EvFa~~-LPG~PDNIR~~~~G~fWVal~~ 284 (376)
T KOG1520|consen 246 YWIKGPKAGT----------SEVFAEG-LPGYPDNIRRDSTGHFWVALHS 284 (376)
T ss_pred eEecCCccCc----------hhhHhhc-CCCCCcceeECCCCCEEEEEec
Confidence 9887765422 2222222 4477999999999999999843
No 10
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.5e-09 Score=99.49 Aligned_cols=151 Identities=14% Similarity=0.251 Sum_probs=112.6
Q ss_pred CCcceEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEe
Q 024317 45 INPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD 121 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD 121 (269)
..|.+++++++++.+||++. ++++|.++| ...+++....-.| ..|.+++++++|+ +||+|
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid---~~t~~~~~~~~vG--------------~~P~~~a~~p~g~~vyv~~ 178 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVID---AATNKVTATIPVG--------------NTPTGVAVDPDGNKVYVTN 178 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEe---CCCCeEEEEEecC--------------CCcceEEECCCCCeEEEEe
Confidence 38999999988889999999 579999997 3445544433222 1789999999999 99999
Q ss_pred CCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--CeEEEEECCCCeEEEeccc
Q 024317 122 KSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN--QLIRQINLKPEDCSKSSQS 199 (269)
Q Consensus 122 ~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n--~~I~~~~~~~~~~~~~~~~ 199 (269)
..+++|..++.++...+-+..... ...+..|.++++++++..+||++..+ +++.+++.....+......
T Consensus 179 ~~~~~v~vi~~~~~~v~~~~~~~~---------~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 179 SDDNTVSVIDTSGNSVVRGSVGSL---------VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred cCCCeEEEEeCCCcceeccccccc---------cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999999999977762221221111 13368899999999977899999988 6999999888777654322
Q ss_pred CccCCCcccceeeeeccceeeEEEecCC-cEEEEcC
Q 024317 200 GSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH 234 (269)
Q Consensus 200 g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~ 234 (269)
. + .+ .|.+++++++| .+||++.
T Consensus 250 ~---~---------~~-~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 250 V---G---------SG-APRGVAVDPAGKAAYVANS 272 (381)
T ss_pred c---c---------cC-CCCceeECCCCCEEEEEec
Confidence 0 1 22 57888999999 6777753
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.21 E-value=2.7e-09 Score=96.54 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=108.8
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEe
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD 121 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD 121 (269)
...+|+.+.++|++..+||+|.+.++|+.++++ ...+++...... ....-..|+.|+++++|. +||++
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~-~~~~~l~~~~~~----------~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID-DDTGKLTPVDSI----------KVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE--TTS-TEEEEEEE----------ECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEe-CCCceEEEeecc----------ccccCCCCcEEEEcCCcCEEEEec
Confidence 456899999998778999999999999999874 233344432110 001124799999999987 99999
Q ss_pred CCCCEEEEEeCC---cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC--CeEEE
Q 024317 122 KSNHVIRKITNL---GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP--EDCSK 195 (269)
Q Consensus 122 ~~n~~I~~~~~~---g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~--~~~~~ 195 (269)
...+.|.+++.+ |. ..+.......... ..-..|.+|+++|++..|||++.+.+.|..|+.+. +.+..
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGF-------TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL 283 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTS-------CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccc-------cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence 999999988743 43 2222111110000 01247999999999889999999999999998743 33333
Q ss_pred ecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCcc
Q 024317 196 SSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLD 239 (269)
Q Consensus 196 ~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~ 239 (269)
.... .. .-..|.+++++++| .|||++. .+.+.
T Consensus 284 ~~~~--~~----------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 284 VQTV--PT----------GGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp EEEE--EE----------SSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEE--eC----------CCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 2221 11 11559999999999 6888883 44443
No 12
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.3e-09 Score=100.01 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=115.1
Q ss_pred CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC-CEEEEeC-
Q 024317 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVADK- 122 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G-~lyVaD~- 122 (269)
..|.++++++....+||.+...+.|.++|. ..-++......| ..|.++++++++ .+||+|.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~---~~~~~~~~~~vG--------------~~P~~~~~~~~~~~vYV~n~~ 136 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDT---ATNTVLGSIPVG--------------LGPVGLAVDPDGKYVYVANAG 136 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcC---cccceeeEeeec--------------cCCceEEECCCCCEEEEEecc
Confidence 679999998877889999999999999973 233333333222 289999999988 5999999
Q ss_pred -CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC
Q 024317 123 -SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG 200 (269)
Q Consensus 123 -~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g 200 (269)
.+++|.++++... ...... . =..|.+++++|++..+||+|..+++|..++..+..+.. ...+
T Consensus 137 ~~~~~vsvid~~t~~~~~~~~-v--------------G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~ 200 (381)
T COG3391 137 NGNNTVSVIDAATNKVTATIP-V--------------GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG 200 (381)
T ss_pred cCCceEEEEeCCCCeEEEEEe-c--------------CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc
Confidence 5799999998765 221111 0 02689999999977799999999999999988777765 3331
Q ss_pred ccCCCcccceeeeeccceeeEEEecCCc-EEEEcCC---CCccccc
Q 024317 201 SALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRHT---GRLDPPL 242 (269)
Q Consensus 201 ~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~~---g~~~~~~ 242 (269)
...+ ...+|.+++++++|. +||++.. +++...+
T Consensus 201 ~~~~---------~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 201 SLVG---------VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred cccc---------cCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 1111 347899999999995 9999944 3444444
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.14 E-value=5.9e-09 Score=94.30 Aligned_cols=167 Identities=15% Similarity=0.207 Sum_probs=112.0
Q ss_pred CCCCcceEEEecCCCeEEEEeC---CCCEEEEEecCCCCC-ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-E
Q 024317 43 LEINPHSVIDRPGSSDLIVLDS---SRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-I 117 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~---~~~~I~~~dl~~~~~-g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-l 117 (269)
...+|..+++++.+..||+++. ..+.|..++. +.+ |++..+.... ..-..|+.|+++++|. |
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i--~~~~g~L~~~~~~~-----------~~g~~p~~i~~~~~g~~l 101 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRI--DPDTGTLTLLNSVP-----------SGGSSPCHIAVDPDGRFL 101 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEE--ETTTTEEEEEEEEE-----------ESSSCEEEEEECTTSSEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEE--CCCcceeEEeeeec-----------cCCCCcEEEEEecCCCEE
Confidence 5668999999988899999998 4688887765 344 6666543110 1234899999999888 9
Q ss_pred EEEeCCCCEEEEEe--CCcc-eEE---e-cCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 118 YVADKSNHVIRKIT--NLGV-TTI---A-GGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 118 yVaD~~n~~I~~~~--~~g~-~~~---~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
||+++..+.|..++ .+|. ... . ..+. + . ....+.-..|+.+.++|++..+||+|.+.++|++|+.+.
T Consensus 102 ~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g--~---~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 102 YVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-G--P---NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp EEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-E--S---STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred EEEEccCCeEEEEEccCCcccceeeeecccCCC-C--C---cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 99999999987765 5565 222 1 1110 0 0 011233568999999999889999999999999999876
Q ss_pred Ce--EEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCcc
Q 024317 191 ED--CSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLD 239 (269)
Q Consensus 191 ~~--~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~ 239 (269)
.. +........+.| +.|+.++++++| .+||++. .+.+.
T Consensus 176 ~~~~l~~~~~~~~~~G-----------~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 176 DTGKLTPVDSIKVPPG-----------SGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TS-TEEEEEEEECSTT-----------SSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred CCceEEEeeccccccC-----------CCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 54 333111111122 669999999998 7999983 44333
No 14
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.12 E-value=7.1e-09 Score=88.41 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=122.9
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcC----------------C------cccCC---CCC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD----------------G------VQGYS---DGE 97 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~----------------g------~~g~~---dg~ 97 (269)
...+|++|.+. .+|..||+|+++ .|.|+|. ++..++++.=. | +.|+- |-.
T Consensus 102 ~Ga~Phgiv~g-pdg~~Witd~~~-aI~R~dp---kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa 176 (353)
T COG4257 102 SGASPHGIVVG-PDGSAWITDTGL-AIGRLDP---KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPA 176 (353)
T ss_pred CCCCCceEEEC-CCCCeeEecCcc-eeEEecC---cccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcc
Confidence 45689999997 489999999987 8999863 24444433211 1 01110 100
Q ss_pred ------cccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCC-cceEEecCCCCCCCCCCCccccccccCceEEEEeCCC
Q 024317 98 ------PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL-GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHI 170 (269)
Q Consensus 98 ------~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~ 170 (269)
...-+=..|.|||++++|.+|++....+.|-++|+. +.....-... +.-..-..|..|+.
T Consensus 177 ~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~------------~~~~gsRriwsdpi- 243 (353)
T COG4257 177 RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN------------ALKAGSRRIWSDPI- 243 (353)
T ss_pred cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCC------------cccccccccccCcc-
Confidence 001122357899999999999999988999999963 2211111100 00112245888887
Q ss_pred CEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccccc--ccccc
Q 024317 171 CALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDPPL--QHDME 247 (269)
Q Consensus 171 g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~~~--~~~~~ 247 (269)
|.+++++.+++++.+|++....=....-+ + .-.+|..+-+|..|++|.+| ..|.+.+-+ +..+.
T Consensus 244 g~~wittwg~g~l~rfdPs~~sW~eypLP----g---------s~arpys~rVD~~grVW~sea~agai~rfdpeta~ft 310 (353)
T COG4257 244 GRAWITTWGTGSLHRFDPSVTSWIEYPLP----G---------SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFT 310 (353)
T ss_pred CcEEEeccCCceeeEeCcccccceeeeCC----C---------CCCCcceeeeccCCcEEeeccccCceeecCcccceEE
Confidence 99999999999999999866542222222 1 12568899999999999999 566666555 88999
Q ss_pred cccCCCCCCch
Q 024317 248 ALPNQSGETST 258 (269)
Q Consensus 248 ~~~~~~~~~~~ 258 (269)
++|.++-+..+
T Consensus 311 v~p~pr~n~gn 321 (353)
T COG4257 311 VLPIPRPNSGN 321 (353)
T ss_pred EecCCCCCCCc
Confidence 99998877543
No 15
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.10 E-value=4.4e-09 Score=89.70 Aligned_cols=164 Identities=14% Similarity=0.152 Sum_probs=114.5
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEE-cCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK 122 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~-g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~ 122 (269)
...|+.|+.+ .+|.+|+++.+.+.|=++|. .+|+++++. |.| .+|.+|.++++|..||+|.
T Consensus 61 G~ap~dvapa-pdG~VWft~qg~gaiGhLdP---~tGev~~ypLg~G--------------a~Phgiv~gpdg~~Witd~ 122 (353)
T COG4257 61 GSAPFDVAPA-PDGAVWFTAQGTGAIGHLDP---ATGEVETYPLGSG--------------ASPHGIVVGPDGSAWITDT 122 (353)
T ss_pred CCCccccccC-CCCceEEecCccccceecCC---CCCceEEEecCCC--------------CCCceEEECCCCCeeEecC
Confidence 4469999996 58999999999999999974 578877764 333 3899999999999999999
Q ss_pred CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC
Q 024317 123 SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG 200 (269)
Q Consensus 123 ~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g 200 (269)
++ .|.++++. +. +++-=... ...+.|+. ..+|+. |+||++.. ++--=++++....+..+..+
T Consensus 123 ~~-aI~R~dpkt~evt~f~lp~~---------~a~~nlet---~vfD~~-G~lWFt~q-~G~yGrLdPa~~~i~vfpaP- 186 (353)
T COG4257 123 GL-AIGRLDPKTLEVTRFPLPLE---------HADANLET---AVFDPW-GNLWFTGQ-IGAYGRLDPARNVISVFPAP- 186 (353)
T ss_pred cc-eeEEecCcccceEEeecccc---------cCCCcccc---eeeCCC-ccEEEeec-cccceecCcccCceeeeccC-
Confidence 87 99999984 43 44422111 11233433 567887 99999887 33333555555555544333
Q ss_pred ccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccc---ccccccccccCCCC
Q 024317 201 SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDP---PLQHDMEALPNQSG 254 (269)
Q Consensus 201 ~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~---~~~~~~~~~~~~~~ 254 (269)
.| ..|.|||+.++|.+|++...+.-.. |..+..|++|.|-+
T Consensus 187 --qG-----------~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~ 230 (353)
T COG4257 187 --QG-----------GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNA 230 (353)
T ss_pred --CC-----------CCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCc
Confidence 12 4599999999999999985444333 33556666666654
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.03 E-value=2.8e-08 Score=89.04 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=107.0
Q ss_pred CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS 123 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~ 123 (269)
.+|..++++++...||++....+.|..++. +.+|.+...... .....|..|+++++|+ +|++.+.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~--~~~g~l~~~~~~------------~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRI--ADDGALTFAAES------------PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEE--CCCCceEEeeee------------cCCCCceEEEECCCCCEEEEEEcC
Confidence 479999998877789999888888987765 345665433210 0123689999999998 9999988
Q ss_pred CCEEEEEeC--Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe--cc
Q 024317 124 NHVIRKITN--LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS--SQ 198 (269)
Q Consensus 124 n~~I~~~~~--~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~--~~ 198 (269)
.++|..++. +|. ....... .....|.+++++|++..|||++.+.++|..++.+....... ..
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~-------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQII-------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCeEEEEEECCCCCCCCceeec-------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 888888864 343 2111100 01346899999999789999999999999999865322110 00
Q ss_pred c-CccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCcc
Q 024317 199 S-GSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLD 239 (269)
Q Consensus 199 ~-g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~ 239 (269)
. ....| ..|.+++++++| .+||++. .+.+.
T Consensus 168 ~~~~~~g-----------~~p~~~~~~pdg~~lyv~~~~~~~v~ 200 (330)
T PRK11028 168 EVTTVEG-----------AGPRHMVFHPNQQYAYCVNELNSSVD 200 (330)
T ss_pred ceecCCC-----------CCCceEEECCCCCEEEEEecCCCEEE
Confidence 0 00011 558899999998 6888874 55554
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.02 E-value=9.6e-09 Score=93.74 Aligned_cols=162 Identities=16% Similarity=0.231 Sum_probs=97.6
Q ss_pred CCcceEEEecCCCeEEEEeCCC-------------------CEEEEEecCCCCCc-cEEEEEcCCcccCCCCCcccccCC
Q 024317 45 INPHSVIDRPGSSDLIVLDSSR-------------------SAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFD 104 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~-------------------~~I~~~dl~~~~~g-~~~~~~g~g~~g~~dg~~~~~~~~ 104 (269)
..|.++++++ +|.|||++..+ +.|++++ +++ +++.++ ..+.
T Consensus 124 ~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~----pdg~~~e~~a--------------~G~r 184 (367)
T TIGR02604 124 HSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN----PDGGKLRVVA--------------HGFQ 184 (367)
T ss_pred ccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEe----cCCCeEEEEe--------------cCcC
Confidence 4588999975 89999998732 3566663 333 233332 2378
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc------eEEecCCCC--CCCC---C---------CC----ccccccccC
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV------TTIAGGGSK--KEGR---A---------DG----PAQNASFSN 160 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~------~~~~g~~~~--~~~~---~---------~~----~~~~~~l~~ 160 (269)
.|.|+++|++|++|++|..++...++++-.. ..+.+.... .... . .. .........
T Consensus 185 np~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a 264 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTA 264 (367)
T ss_pred CCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCcc
Confidence 9999999999999999987665555553211 000000000 0000 0 00 001112357
Q ss_pred ceEEEEeC-------CCCEEEEEECCCCeEEEEECCC--CeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEE
Q 024317 161 DFELTFVP-------HICALLISDHGNQLIRQINLKP--EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYI 231 (269)
Q Consensus 161 P~gia~~~-------~~g~LyVaD~~n~~I~~~~~~~--~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyV 231 (269)
|.|+++-. -++.++|++...++|+++.++. ....... .. +........+|..++++++|.|||
T Consensus 265 p~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~-~~-------~l~~~~~~~rp~dv~~~pDG~Lyv 336 (367)
T TIGR02604 265 PCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGER-PE-------FLRSNDTWFRPVNVTVGPDGALYV 336 (367)
T ss_pred ccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeec-Cc-------eEecCCCcccccceeECCCCCEEE
Confidence 89999873 2478999999999999998763 2222110 10 101111236899999999999999
Q ss_pred Ec
Q 024317 232 IR 233 (269)
Q Consensus 232 ad 233 (269)
+|
T Consensus 337 ~d 338 (367)
T TIGR02604 337 SD 338 (367)
T ss_pred EE
Confidence 99
No 18
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.02 E-value=2.6e-08 Score=89.21 Aligned_cols=164 Identities=11% Similarity=0.046 Sum_probs=105.7
Q ss_pred CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS 123 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~ 123 (269)
..|++++++|++..+||++.+.+.|..+|+ +..|.+......... ...-..|.+++++++|. +||++..
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~--~~~g~l~~~~~~~~~--------~~~g~~p~~~~~~pdg~~lyv~~~~ 195 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTL--SDDGHLVAQEPAEVT--------TVEGAGPRHMVFHPNQQYAYCVNEL 195 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEE--CCCCcccccCCCcee--------cCCCCCCceEEECCCCCEEEEEecC
Confidence 468999998877899999999999999987 344544211000000 00113689999999988 8999988
Q ss_pred CCEEEEEeCC---cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC--CeEEEec
Q 024317 124 NHVIRKITNL---GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP--EDCSKSS 197 (269)
Q Consensus 124 n~~I~~~~~~---g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~--~~~~~~~ 197 (269)
.+.|..++-+ +. ..+....... ... ..-.+|.+|+++|++..|||++...+.|..|+.+. ......+
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p----~~~---~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMP----ADF---SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCC----CcC---CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 8999888743 33 2221111000 000 01135778999999788999999888998887643 2222222
Q ss_pred ccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCc
Q 024317 198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRL 238 (269)
Q Consensus 198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~ 238 (269)
.. .. -..|.+++++++| .||++.. .+.+
T Consensus 269 ~~--~~-----------~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 269 HQ--PT-----------ETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred EE--ec-----------cccCCceEECCCCCEEEEEEccCCcE
Confidence 21 00 1468899999999 8898884 4433
No 19
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=3.7e-08 Score=87.43 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=101.2
Q ss_pred cCCCCcceEEEecCCCeEEEEeCC-----------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEE
Q 024317 42 QLEINPHSVIDRPGSSDLIVLDSS-----------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA 110 (269)
Q Consensus 42 ~~~~~P~giav~~~~g~lyV~D~~-----------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gia 110 (269)
...+.|.++.++ .+|.+||+|.. ..++|++ ++.|....... ..+..|+|||
T Consensus 108 ~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~----~p~g~~~~l~~-------------~~~~~~NGla 169 (307)
T COG3386 108 LPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRV----DPDGGVVRLLD-------------DDLTIPNGLA 169 (307)
T ss_pred CCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEE----cCCCCEEEeec-------------CcEEecCceE
Confidence 356889999996 58999999977 2356666 34555555432 2377999999
Q ss_pred EcCCC-CEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEE
Q 024317 111 VDMKG-NIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQIN 187 (269)
Q Consensus 111 vd~~G-~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~ 187 (269)
++++| .+||+|+..++|.+++-+-. -.+.+.... ... ...=..|.|+++|.+ |+||++-.. ..+|.+|+
T Consensus 170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~-~~~------~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF-VDF------DEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE-EEc------cCCCCCCCceEEeCC-CCEEEecccCCceEEEEC
Confidence 99999 59999999999999975511 111111000 000 000146999999987 999954444 45999999
Q ss_pred CCCCeEEEecccCccCCCcccceeeeeccceeeEEEecC--CcEEEEcCC
Q 024317 188 LKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFV--ARPYIIRHT 235 (269)
Q Consensus 188 ~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~--g~lyVad~~ 235 (269)
++|.......-+. ..|..+|+... ..|||+...
T Consensus 242 pdG~l~~~i~lP~---------------~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 242 PDGKLLGEIKLPV---------------KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCCcEEEEEECCC---------------CCCccceEeCCCcCEEEEEecC
Confidence 9987766654441 33455555543 588988843
No 20
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.99 E-value=6.8e-09 Score=99.17 Aligned_cols=151 Identities=17% Similarity=0.101 Sum_probs=114.4
Q ss_pred cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317 42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA 120 (269)
Q Consensus 42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa 120 (269)
..|..|.|||||-..-++|.+|+.+.+|-+-.| +|+.+.+. ....|-.|.+|++|+ .|+||-+
T Consensus 1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~L----dG~~rkvL------------f~tdLVNPR~iv~D~~rgnLYwt 1128 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALL----DGSERKVL------------FYTDLVNPRAIVVDPIRGNLYWT 1128 (1289)
T ss_pred ccCCCccceeeeeccceeeeeccccchhheeec----CCceeeEE------------EeecccCcceEEeecccCceeec
Confidence 468899999998878899999999999877633 55544332 123478999999998 8889999
Q ss_pred eCC--CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317 121 DKS--NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS 197 (269)
Q Consensus 121 D~~--n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~ 197 (269)
|+. |-.|-..+-||+ .++.-. ..+.-|+||.++|-...|..+|.+++|+--+.+++.......
T Consensus 1129 DWnRenPkIets~mDG~NrRilin--------------~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~ 1194 (1289)
T KOG1214|consen 1129 DWNRENPKIETSSMDGENRRILIN--------------TDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQ 1194 (1289)
T ss_pred cccccCCcceeeccCCccceEEee--------------cccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhh
Confidence 974 667888888888 444332 226779999999988889999999999998887776443321
Q ss_pred ccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317 198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL 238 (269)
Q Consensus 198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~ 238 (269)
. .|++|.+|.-+.+. +|-+| ..+++
T Consensus 1195 ~---------------~LqYPF~itsy~~~-fY~TDWk~n~v 1220 (1289)
T KOG1214|consen 1195 N---------------NLQYPFSITSYADH-FYHTDWKRNGV 1220 (1289)
T ss_pred h---------------cccCceeeeecccc-ceeeccccCce
Confidence 1 46889999988654 99999 44333
No 21
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.87 E-value=1.7e-08 Score=72.85 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=53.1
Q ss_pred ceEEEcCC-CCEEEEeCC-----------------CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEE
Q 024317 107 KSFAVDMK-GNIYVADKS-----------------NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTF 166 (269)
Q Consensus 107 ~giavd~~-G~lyVaD~~-----------------n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~ 166 (269)
++++|+++ |.|||+|.. ++|+.++|+... ..++.. |..|+||++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~----------------L~fpNGVal 64 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG----------------LYFPNGVAL 64 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE----------------ESSEEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC----------------CCccCeEEE
Confidence 47899998 999999982 579999999876 444432 889999999
Q ss_pred eCCCCEEEEEECCCCeEEEEECCC
Q 024317 167 VPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 167 ~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
++++..|+|+++...||+|+...|
T Consensus 65 s~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 65 SPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp -TTSSEEEEEEGGGTEEEEEESSS
T ss_pred cCCCCEEEEEeccCceEEEEEEeC
Confidence 999888999999999999998766
No 22
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.85 E-value=4.5e-09 Score=59.23 Aligned_cols=28 Identities=50% Similarity=0.837 Sum_probs=26.5
Q ss_pred CCCCceEEEcCCCCEEEEeCCCCEEEEE
Q 024317 103 FDKPKSFAVDMKGNIYVADKSNHVIRKI 130 (269)
Q Consensus 103 ~~~P~giavd~~G~lyVaD~~n~~I~~~ 130 (269)
|+.|.||+++++|+|||||++||||++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5789999999999999999999999986
No 23
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.79 E-value=1.3e-06 Score=75.19 Aligned_cols=185 Identities=14% Similarity=0.101 Sum_probs=102.6
Q ss_pred CcEEEEE-ecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceE
Q 024317 31 GYTVTTV-IDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF 109 (269)
Q Consensus 31 g~~~~~~-~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gi 109 (269)
.+.+..- ..-.+....+.||+++++.+.||...-....|+.++ .+|++...+.- ..+.-|.||
T Consensus 7 ~y~~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els----~~G~vlr~i~l------------~g~~D~EgI 70 (248)
T PF06977_consen 7 DYRVVIEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELS----LDGKVLRRIPL------------DGFGDYEGI 70 (248)
T ss_dssp T-EEEEEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEE----TT--EEEEEE-------------SS-SSEEEE
T ss_pred CcEEEEeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEc----CCCCEEEEEeC------------CCCCCceeE
Confidence 4554432 222345567999999987899999888889999985 46776665422 125578999
Q ss_pred EEcCCCCEEEEeCCCCEEEEEeC--Ccc----e---EE-ecCC---CCCC--------------------------CC--
Q 024317 110 AVDMKGNIYVADKSNHVIRKITN--LGV----T---TI-AGGG---SKKE--------------------------GR-- 148 (269)
Q Consensus 110 avd~~G~lyVaD~~n~~I~~~~~--~g~----~---~~-~g~~---~~~~--------------------------~~-- 148 (269)
+.-.+|.+.+++-..+++.+++- ++. . .+ .+.. ..++ ..
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 99877878888876777776653 221 0 01 0100 0000 00
Q ss_pred CCC----------ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccce
Q 024317 149 ADG----------PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCL 218 (269)
Q Consensus 149 ~~~----------~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p 218 (269)
.+. ......+..|++|+++|..++|||....+.+|..++..|..+....-.....| + .-.+..|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~g---l---~~~~~Qp 224 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHG---L---SKDIPQP 224 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-------SS---SE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccC---c---ccccCCc
Confidence 000 00112356799999999999999999999999999999987665432211111 0 0134679
Q ss_pred eeEEEecCCcEEEEcCCCC
Q 024317 219 VSLVIGFVARPYIIRHTGR 237 (269)
Q Consensus 219 ~gia~d~~g~lyVad~~g~ 237 (269)
.|||+|++|+|||+..-+.
T Consensus 225 EGIa~d~~G~LYIvsEpNl 243 (248)
T PF06977_consen 225 EGIAFDPDGNLYIVSEPNL 243 (248)
T ss_dssp EEEEE-TT--EEEEETTTE
T ss_pred cEEEECCCCCEEEEcCCce
Confidence 9999999999999986544
No 24
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.66 E-value=1.3e-06 Score=78.21 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=74.7
Q ss_pred cCCCCceEEEcCCC-CEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC
Q 024317 102 RFDKPKSFAVDMKG-NIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH 178 (269)
Q Consensus 102 ~~~~P~giavd~~G-~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~ 178 (269)
.--+|-||+++.+| +|||||.+ --+.+++++|. ..++..... ..+...+++.+++ +|.+|++|+
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G-----------~~~kf~N~ldI~~-~g~vyFTDS 179 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEG-----------KPFKFLNDLDIDP-EGVVYFTDS 179 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccC-----------eeeeecCceeEcC-CCeEEEecc
Confidence 34689999999988 89999975 35888998876 444433211 2366678999999 599999999
Q ss_pred CC-----------------CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCC-CCcc
Q 024317 179 GN-----------------QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHT-GRLD 239 (269)
Q Consensus 179 ~n-----------------~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~-g~~~ 239 (269)
.. +|+.++++..+..... .. .|..|+|+++.+++ .+.+++.. .|+.
T Consensus 180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VL-------------ld--~L~F~NGlaLS~d~sfvl~~Et~~~ri~ 244 (376)
T KOG1520|consen 180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVL-------------LD--GLYFPNGLALSPDGSFVLVAETTTARIK 244 (376)
T ss_pred ccccchhheEEeeecCCCccceEEecCcccchhhh-------------hh--cccccccccCCCCCCEEEEEeeccceee
Confidence 64 3333333333222111 11 45789999999999 55566643 3444
Q ss_pred ccc
Q 024317 240 PPL 242 (269)
Q Consensus 240 ~~~ 242 (269)
++-
T Consensus 245 ryw 247 (376)
T KOG1520|consen 245 RYW 247 (376)
T ss_pred eeE
Confidence 443
No 25
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.66 E-value=6.8e-08 Score=54.35 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=25.7
Q ss_pred ccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317 158 FSNDFELTFVPHICALLISDHGNQLIRQI 186 (269)
Q Consensus 158 l~~P~gia~~~~~g~LyVaD~~n~~I~~~ 186 (269)
|..|+||+++++ |+|||+|..|+||++|
T Consensus 1 f~~P~gvav~~~-g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSD-GNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETT-SEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCC-CCEEEEECCCCEEEEC
Confidence 578999999976 9999999999999986
No 26
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.60 E-value=2e-06 Score=77.48 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=96.9
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCC----CCEE
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK----GNIY 118 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~----G~ly 118 (269)
|+.|.+|++.| +|++||++. .++|++++ .+|.. ..+..... - .........||+++++ +.||
T Consensus 1 L~~P~~~a~~p-dG~l~v~e~-~G~i~~~~----~~g~~~~~v~~~~~-v------~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 1 LNNPRSMAFLP-DGRLLVAER-SGRIWVVD----KDGSLKTPVADLPE-V------FADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp ESSEEEEEEET-TSCEEEEET-TTEEEEEE----TTTEECEEEEE-TT-T------BTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CCCceEEEEeC-CCcEEEEeC-CceEEEEe----CCCcCcceeccccc-c------cccccCCcccceeccccCCCCEEE
Confidence 46899999976 699999998 99999995 45554 22222110 0 1112336689999984 8899
Q ss_pred EEeCCC--------CEEEEEeCC-c-----c-eEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC---
Q 024317 119 VADKSN--------HVIRKITNL-G-----V-TTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--- 179 (269)
Q Consensus 119 VaD~~n--------~~I~~~~~~-g-----~-~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--- 179 (269)
|+-+.. ++|.++..+ + . ..+ .+... .......-..|++.|+ |.|||+=..
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~fgpD-G~LYvs~G~~~~ 136 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLAFGPD-GKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEEE-TT-SEEEEEEB-TTT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCccccCCCC-CcEEEEeCCCCC
Confidence 988732 467766532 1 1 222 12111 0012345567999998 899987442
Q ss_pred ----------CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecC-CcEEEEcCC
Q 024317 180 ----------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFV-ARPYIIRHT 235 (269)
Q Consensus 180 ----------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~-g~lyVad~~ 235 (269)
.+.|++++.++..-.-....+........|+. .+-.|.++++|+. |+||++|+.
T Consensus 137 ~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 137 DDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--GLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp GGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-
T ss_pred cccccccccccceEEEecccCcCCCCCccccCCCceEEEEEe--CCCccccEEEECCCCcEEEEccC
Confidence 35788888877522111111111123334444 3578999999999 999999964
No 27
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.58 E-value=1.4e-05 Score=74.47 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=105.0
Q ss_pred ecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC
Q 024317 27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP 106 (269)
Q Consensus 27 ~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P 106 (269)
..+.++.++++.+ .|..|++|++.| +|++||+....++|++++. .++....+.+... .. .......+
T Consensus 15 ~~p~~f~~~~va~---GL~~Pw~maflP-DG~llVtER~~G~I~~v~~---~~~~~~~~~~l~~--v~----~~~ge~GL 81 (454)
T TIGR03606 15 AASENFDKKVLLS---GLNKPWALLWGP-DNQLWVTERATGKILRVNP---ETGEVKVVFTLPE--IV----NDAQHNGL 81 (454)
T ss_pred cCCCCcEEEEEEC---CCCCceEEEEcC-CCeEEEEEecCCEEEEEeC---CCCceeeeecCCc--ee----ccCCCCce
Confidence 3467788887764 467999999965 7899999987799999852 2333333322211 00 01124567
Q ss_pred ceEEEcCC-------CCEEEEeC---------CCCEEEEEeCCc-------ceE-EecCCCCCCCCCCCccccccccCce
Q 024317 107 KSFAVDMK-------GNIYVADK---------SNHVIRKITNLG-------VTT-IAGGGSKKEGRADGPAQNASFSNDF 162 (269)
Q Consensus 107 ~giavd~~-------G~lyVaD~---------~n~~I~~~~~~g-------~~~-~~g~~~~~~~~~~~~~~~~~l~~P~ 162 (269)
.||+++++ +.|||+-+ ...+|.++..+. ... +.+... .....=.
T Consensus 82 lglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~------------~~~H~Gg 149 (454)
T TIGR03606 82 LGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPA------------GNDHNGG 149 (454)
T ss_pred eeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCC------------CCCcCCc
Confidence 88999865 35999842 246787776431 112 222110 0123334
Q ss_pred EEEEeCCCCEEEEEECCC--------------------------------CeEEEEECCCCeEEEecccCccCC-Ccccc
Q 024317 163 ELTFVPHICALLISDHGN--------------------------------QLIRQINLKPEDCSKSSQSGSALG-AVSVW 209 (269)
Q Consensus 163 gia~~~~~g~LyVaD~~n--------------------------------~~I~~~~~~~~~~~~~~~~g~~~g-~~~~~ 209 (269)
.|+++|+ |.|||+-... +.|+|++.+|..-. .++ +..+ ....|
T Consensus 150 rI~FgPD-G~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~--dNP-f~~g~~~eIy 225 (454)
T TIGR03606 150 RLVFGPD-GKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK--DNP-SINGVVSHIF 225 (454)
T ss_pred eEEECCC-CcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCC--CCC-ccCCCcceEE
Confidence 6888998 8899864432 24666666553110 000 0001 12234
Q ss_pred eeeeeccceeeEEEecCCcEEEEcCC
Q 024317 210 VLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 210 ~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
.. .+-.|.|+++|++|.||++|+.
T Consensus 226 A~--G~RNp~Gla~dp~G~Lw~~e~G 249 (454)
T TIGR03606 226 TY--GHRNPQGLAFTPDGTLYASEQG 249 (454)
T ss_pred EE--eccccceeEECCCCCEEEEecC
Confidence 33 3477999999999999999965
No 28
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.54 E-value=8.1e-07 Score=85.37 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=101.3
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n 124 (269)
-|.||++|=.+..+|.+|-..+.|.+-.|. .++.++++ ...|.+|.|||||- ..++|-+|+.+
T Consensus 1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~---G~Ep~ti~-------------n~~L~SPEGiAVDh~~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLE---GAEPETIV-------------NSGLISPEGIAVDHIRRNMYWTDSVL 1089 (1289)
T ss_pred eeeeeecccccceEEEeecCCCcccccccc---CCCCceee-------------cccCCCccceeeeeccceeeeecccc
Confidence 477888865577899999988888887541 23344443 23488999999997 55699999999
Q ss_pred CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--CCeEEEEECCCCeEEEecccCc
Q 024317 125 HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--NQLIRQINLKPEDCSKSSQSGS 201 (269)
Q Consensus 125 ~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--n~~I~~~~~~~~~~~~~~~~g~ 201 (269)
.+|-+-..+|+ +.+... ..|-+|.+|++|+-.++||.+|+. |-.|-+.+.+|+-...+.+.
T Consensus 1090 D~IevA~LdG~~rkvLf~--------------tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~-- 1153 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKVLFY--------------TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT-- 1153 (1289)
T ss_pred chhheeecCCceeeEEEe--------------ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeec--
Confidence 99998888887 333221 128899999999999999999983 55677778887655544433
Q ss_pred cCCCcccceeeeeccceeeEEEecCC
Q 024317 202 ALGAVSVWVLVSVLSCLVSLVIGFVA 227 (269)
Q Consensus 202 ~~g~~~~~~~~~~l~~p~gia~d~~g 227 (269)
.+.-|.|+.+|+..
T Consensus 1154 ------------DigLPNGLtfdpfs 1167 (1289)
T KOG1214|consen 1154 ------------DIGLPNGLTFDPFS 1167 (1289)
T ss_pred ------------ccCCCCCceeCccc
Confidence 23447777777776
No 29
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=1.5e-05 Score=70.46 Aligned_cols=165 Identities=14% Similarity=0.165 Sum_probs=110.0
Q ss_pred CCCCcceEEEecCCCeEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEE
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV 119 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyV 119 (269)
...+|+-|++++++..||+.... .+.|..+..+ ..+|++..+--. ...-+.|+-|++|.+|+ +|+
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD-~~~G~Lt~ln~~-----------~~~g~~p~yvsvd~~g~~vf~ 105 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID-PDDGRLTFLNRQ-----------TLPGSPPCYVSVDEDGRFVFV 105 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc-CCCCeEEEeecc-----------ccCCCCCeEEEECCCCCEEEE
Confidence 46689999998877799999775 6677666542 234777665311 11234669999999997 999
Q ss_pred EeCCCCEEEEEe--CCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317 120 ADKSNHVIRKIT--NLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS 196 (269)
Q Consensus 120 aD~~n~~I~~~~--~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~ 196 (269)
|.+..+.|.++. .+|. ....+.-.-....+ -..+.-..++..-++|++..|++.|-+..||..|+.+.+.+...
T Consensus 106 AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p---~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 106 ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP---HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred EEccCceEEEEEcccCCccccceeeeecCCCCC---CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 999988888765 5675 22222111000000 11222334677778999779999999999999999886655544
Q ss_pred cccCccCCCcccceeeeeccceeeEEEecCC-cEEEEc
Q 024317 197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR 233 (269)
Q Consensus 197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad 233 (269)
...-...| ..|+=|++.++| -.|+..
T Consensus 183 ~~~~v~~G-----------~GPRHi~FHpn~k~aY~v~ 209 (346)
T COG2706 183 DPAEVKPG-----------AGPRHIVFHPNGKYAYLVN 209 (346)
T ss_pred cccccCCC-----------CCcceEEEcCCCcEEEEEe
Confidence 33322222 568999999999 667776
No 30
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.45 E-value=7.8e-06 Score=73.62 Aligned_cols=184 Identities=17% Similarity=0.155 Sum_probs=93.1
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCE-EEEEecCCCCCccEEEEEcCCc-----ccCC----CCCcccccCCCCceEEEcC
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRSA-FYTLSFPLSEESVVKRLAGDGV-----QGYS----DGEPGSARFDKPKSFAVDM 113 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~~-I~~~dl~~~~~g~~~~~~g~g~-----~g~~----dg~~~~~~~~~P~giavd~ 113 (269)
..+-..|++.| +|.|||+-..... -..-+. .+..|++..+--.|. +.+. +...-...+..|.++++|+
T Consensus 113 ~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~-~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 113 NHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDP-NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp SS-EEEEEE-T-TSEEEEEEB-TTTGGGGCST-TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred CCCCccccCCC-CCcEEEEeCCCCCccccccc-ccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEEC
Confidence 34457799975 7899999432211 000000 012333333332222 1111 1112245689999999999
Q ss_pred C-CCEEEEeCCC---CEEEEEeCCcce---EEe-cCCCCCC-----CCCCCc-cccccc---cCceEEEEeCC------C
Q 024317 114 K-GNIYVADKSN---HVIRKITNLGVT---TIA-GGGSKKE-----GRADGP-AQNASF---SNDFELTFVPH------I 170 (269)
Q Consensus 114 ~-G~lyVaD~~n---~~I~~~~~~g~~---~~~-g~~~~~~-----~~~~~~-~~~~~l---~~P~gia~~~~------~ 170 (269)
. |+||++|.+. ..|.++.+.+.. ... +....+. ...... .....+ ..|.|+++-.. .
T Consensus 191 ~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~ 270 (331)
T PF07995_consen 191 NTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYR 270 (331)
T ss_dssp TTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGT
T ss_pred CCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCcccc
Confidence 8 9999999764 345555543211 111 0000000 000000 000011 46889987632 4
Q ss_pred CEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317 171 CALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD 239 (269)
Q Consensus 171 g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~ 239 (269)
|.++|+|...++|+++..+..........- . +. .-.+|.+|++++||.|||++ .+|+|+
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~--------~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEF-L-GG--------FGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-TT--------SSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEc-c-cc--------CCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 789999999999999998744322111110 0 00 11479999999999999998 477765
No 31
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=0.00033 Score=62.02 Aligned_cols=171 Identities=12% Similarity=0.018 Sum_probs=107.1
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcc-cccCCCCceEEEcCCCC-EEEE
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPG-SARFDKPKSFAVDMKGN-IYVA 120 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~-~~~~~~P~giavd~~G~-lyVa 120 (269)
....|..|++++++..+|++....+.|.++-+ ..+|.+....+.-. .. ..++. ...-.++...-++++++ |+++
T Consensus 87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~--~~dG~l~~~v~~~~-h~-g~~p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL--QADGSLQPVVQVVK-HT-GSGPHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred CCCCCeEEEECCCCCEEEEEEccCceEEEEEc--ccCCccccceeeee-cC-CCCCCccccCCccceeeeCCCCCEEEEe
Confidence 45567999997655589999999999988865 45677665543211 00 01111 12233567888999996 9999
Q ss_pred eCCCCEEEEEeC-CcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC--eEEEec
Q 024317 121 DKSNHVIRKITN-LGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE--DCSKSS 197 (269)
Q Consensus 121 D~~n~~I~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~--~~~~~~ 197 (269)
|-+..||..|+- +|+.+.+....- ..=..|..|++.|+....|+...-++.|-++..++. .+...
T Consensus 163 DLG~Dri~~y~~~dg~L~~~~~~~v-----------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l- 230 (346)
T COG2706 163 DLGTDRIFLYDLDDGKLTPADPAEV-----------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL- 230 (346)
T ss_pred ecCCceEEEEEcccCcccccccccc-----------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe-
Confidence 999999998884 454111111000 002468999999997788999999999888776653 22221
Q ss_pred ccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC
Q 024317 198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH 234 (269)
Q Consensus 198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~ 234 (269)
+.....-.... .-..-..|.++++| .||+++.
T Consensus 231 Q~i~tlP~dF~-----g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 231 QTIDTLPEDFT-----GTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred eeeccCccccC-----CCCceeEEEECCCCCEEEEecC
Confidence 11101110000 01334568899999 7888883
No 32
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=0.00078 Score=58.57 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=107.0
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK 122 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~ 122 (269)
...+-.+++++|+...+|.+-...-.|..+ +.+|++...+.- ..|..|.+|..-.+|...++|-
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl----t~~GdlirtiPL------------~g~~DpE~Ieyig~n~fvi~dE 147 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL----TKEGDLIRTIPL------------TGFSDPETIEYIGGNQFVIVDE 147 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEE----ecCCceEEEecc------------cccCChhHeEEecCCEEEEEeh
Confidence 345688999998777787776555566666 678887766522 2366788888877777777887
Q ss_pred CCCEEEEEe--CCcc-eEEec-------CCCCCCCC-----C--CC------------------------------ccc-
Q 024317 123 SNHVIRKIT--NLGV-TTIAG-------GGSKKEGR-----A--DG------------------------------PAQ- 154 (269)
Q Consensus 123 ~n~~I~~~~--~~g~-~~~~g-------~~~~~~~~-----~--~~------------------------------~~~- 154 (269)
...++.+|. +++. ..+.. ......++ + +. ...
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence 777766554 4432 11110 00000000 0 00 000
Q ss_pred -cccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 155 -NASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 155 -~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
+--+..-+|+.+++..++|+|.-...+++..++..|..+....-.+...|- .-....+.|||.|.+|+|||+.
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL------~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGL------SSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCC------cccCCCcceeEECCCCCEEEEe
Confidence 011344578888887889999888889999999999864433222111111 0134678999999999999998
Q ss_pred CCCCc
Q 024317 234 HTGRL 238 (269)
Q Consensus 234 ~~g~~ 238 (269)
.-+..
T Consensus 302 EPnlf 306 (316)
T COG3204 302 EPNLF 306 (316)
T ss_pred cCCcc
Confidence 55433
No 33
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.21 E-value=1.1e-05 Score=58.18 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=49.2
Q ss_pred eEEEecCCCeEEEEeC-----------------CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEE
Q 024317 49 SVIDRPGSSDLIVLDS-----------------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV 111 (269)
Q Consensus 49 giav~~~~g~lyV~D~-----------------~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giav 111 (269)
+++|++.+|.||++|+ .++|++++|. .+++..++. ..|.+|+||++
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp---~t~~~~vl~--------------~~L~fpNGVal 64 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP---STKETTVLL--------------DGLYFPNGVAL 64 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEET---TTTEEEEEE--------------EEESSEEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEEC---CCCeEEEeh--------------hCCCccCeEEE
Confidence 6888654599999985 3577888863 355555554 34789999999
Q ss_pred cCCCC-EEEEeCCCCEEEEEeCCc
Q 024317 112 DMKGN-IYVADKSNHVIRKITNLG 134 (269)
Q Consensus 112 d~~G~-lyVaD~~n~~I~~~~~~g 134 (269)
++++. ++|+++..+||.++--.|
T Consensus 65 s~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 65 SPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp -TTSSEEEEEEGGGTEEEEEESSS
T ss_pred cCCCCEEEEEeccCceEEEEEEeC
Confidence 99999 999999999999986443
No 34
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.18 E-value=0.00079 Score=59.44 Aligned_cols=173 Identities=10% Similarity=0.030 Sum_probs=101.7
Q ss_pred CCcEEEEEecCcc---CCCCcceEEEecCC-----CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCccc------CCC
Q 024317 30 DGYTVTTVIDGHQ---LEINPHSVIDRPGS-----SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQG------YSD 95 (269)
Q Consensus 30 ~g~~~~~~~~g~~---~~~~P~giav~~~~-----g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g------~~d 95 (269)
.+..++++-=... .-..-..++++... +.+||+|.....|.++|+ .+|+..++....... +..
T Consensus 43 t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl---~~~~s~Rv~~~~~~~~p~~~~~~i 119 (287)
T PF03022_consen 43 TNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDL---ATGKSWRVLHNSFSPDPDAGPFTI 119 (287)
T ss_dssp TTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEET---TTTEEEEEETCGCTTS-SSEEEEE
T ss_pred CCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEc---cCCcEEEEecCCcceeccccceec
Confidence 4555555432222 23356778886533 589999999999999996 455555554331100 000
Q ss_pred CCcccccCCCCceEEEcC---CCC-EEEEeCCCCEEEEEeC----Ccc----e------EEecCCCCCCCCCCCcccccc
Q 024317 96 GEPGSARFDKPKSFAVDM---KGN-IYVADKSNHVIRKITN----LGV----T------TIAGGGSKKEGRADGPAQNAS 157 (269)
Q Consensus 96 g~~~~~~~~~P~giavd~---~G~-lyVaD~~n~~I~~~~~----~g~----~------~~~g~~~~~~~~~~~~~~~~~ 157 (269)
++..-.......||+..+ +|+ ||+.--...+++++.. +.. . ...|..
T Consensus 120 ~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k--------------- 184 (287)
T PF03022_consen 120 GGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDK--------------- 184 (287)
T ss_dssp TTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----------------
T ss_pred cCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecccc---------------
Confidence 111111112245678865 433 9999987788888862 111 1 111110
Q ss_pred ccCceEEEEeCCCCEEEEEECCCCeEEEEECCC-----CeEEEecccCccCCCcccceeeeeccceeeEEEec--CCcEE
Q 024317 158 FSNDFELTFVPHICALLISDHGNQLIRQINLKP-----EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF--VARPY 230 (269)
Q Consensus 158 l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~-----~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~--~g~ly 230 (269)
-..-.|+++|++ |+||+++...+.|.++++++ ........+ -.+..|.+++++. +|.||
T Consensus 185 ~~~s~g~~~D~~-G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~ 250 (287)
T PF03022_consen 185 GSQSDGMAIDPN-GNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLW 250 (287)
T ss_dssp --SECEEEEETT-TEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EE
T ss_pred CCCCceEEECCC-CcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEE
Confidence 123468999986 99999999999999999998 333332222 0368899999999 99999
Q ss_pred EEcC
Q 024317 231 IIRH 234 (269)
Q Consensus 231 Vad~ 234 (269)
|..+
T Consensus 251 v~sn 254 (287)
T PF03022_consen 251 VLSN 254 (287)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9874
No 35
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.15 E-value=0.00038 Score=60.18 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=71.9
Q ss_pred CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCc-
Q 024317 57 SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLG- 134 (269)
Q Consensus 57 g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g- 134 (269)
+.+|++....+.|.++|+ .+++....... -..|.+++++++|. +|++....+.|++++...
T Consensus 1 ~~~~~s~~~d~~v~~~d~---~t~~~~~~~~~--------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~ 63 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDT---ATLEVTRTFPV--------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG 63 (300)
T ss_pred CcEEEEecCCCEEEEEEC---CCCceEEEEEC--------------CCCCCceEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 468899988899999975 34443332211 12467899999987 788888888999999654
Q ss_pred c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 135 V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 135 ~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
. ...... -..|..+++++++..+|++....++|+.++......
T Consensus 64 ~~~~~~~~----------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 64 EVIGTLPS----------------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV 107 (300)
T ss_pred cEEEeccC----------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence 3 221110 123567888998667899887778999999876543
No 36
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.14 E-value=0.0012 Score=57.02 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=76.6
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n 124 (269)
.|.++++++++..+|++....+.|+.+|. .+++....... -..|..++++++|+ +|++....
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~---~~~~~~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDL---ATGEVIGTLPS--------------GPDPELFALHPNGKILYIANEDD 94 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEEC---CCCcEEEeccC--------------CCCccEEEECCCCCEEEEEcCCC
Confidence 58889998765678999888899999974 34554432211 01356789999887 77887767
Q ss_pred CEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 125 HVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 125 ~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
++|+.++......+..... -..|.++++++++..++++......+..++......
T Consensus 95 ~~l~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIPV--------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred CeEEEEECCCCeEEeEeeC--------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 8999999754321111000 124788999998556666665555677777665443
No 37
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.09 E-value=0.00045 Score=62.49 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=82.4
Q ss_pred CCeEEEEeCC----CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC--------
Q 024317 56 SSDLIVLDSS----RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK-------- 122 (269)
Q Consensus 56 ~g~lyV~D~~----~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~-------- 122 (269)
..++||.|.. .++|.++|. .++++...+..| ..|+++ +.++|. ||||.+
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~---~~~~v~g~i~~G--------------~~P~~~-~spDg~~lyva~~~~~R~~~G 73 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDG---EAGRVLGMTDGG--------------FLPNPV-VASDGSFFAHASTVYSRIARG 73 (352)
T ss_pred CCEEEEECCcccccCceEEEEEC---CCCEEEEEEEcc--------------CCCcee-ECCCCCEEEEEeccccccccC
Confidence 5779999987 389999984 456655544333 288987 989887 999999
Q ss_pred -CCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEE
Q 024317 123 -SNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSK 195 (269)
Q Consensus 123 -~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~ 195 (269)
..+.|.++|....+.+.....+. .+.......|..+++++++..|||++.. .+.|-+++.....+..
T Consensus 74 ~~~d~V~v~D~~t~~~~~~i~~p~------~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 74 KRTDYVEVIDPQTHLPIADIELPE------GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCCEEEEEECccCcEEeEEccCC------CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 88999999975442221111000 0001235678899999997799999976 8899999998876554
No 38
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.03 E-value=0.0011 Score=60.75 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=85.6
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCC
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNH 125 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~ 125 (269)
+.++++++++..+||++. .+.|.++|+ .++++...+..| ..|.+++++++|+ +||+++..+
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~---~~~~~v~~i~~G--------------~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDL---ATGKVVATIKVG--------------GNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEET---TSSSEEEEEE-S--------------SEEEEEEE--TTTEEEEEEEETT
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEEC---CcccEEEEEecC--------------CCcceEEEcCCCCEEEEEecCCC
Confidence 455777766678999986 579999997 344444333222 2789999999998 999999999
Q ss_pred EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317 126 VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA 202 (269)
Q Consensus 126 ~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~ 202 (269)
.+.++|.... ..+...+... ...-..+.+|..++.+...+++-...++|+.++............ .
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~---------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i--~ 169 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPV---------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI--K 169 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-T---------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE--E
T ss_pred ceeEeccccccceeecccccccc---------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee--c
Confidence 9999996543 3332221100 001134567876776455666777788999998654311110000 0
Q ss_pred CCCcccceeeeeccceeeEEEecCCcEEEE
Q 024317 203 LGAVSVWVLVSVLSCLVSLVIGFVARPYII 232 (269)
Q Consensus 203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVa 232 (269)
.-..|++..+|++|+.|++
T Consensus 170 -----------~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 170 -----------VGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp -------------TTEEEEEE-TTSSEEEE
T ss_pred -----------ccccccccccCcccceeee
Confidence 1155888899999976655
No 39
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.93 E-value=0.003 Score=57.19 Aligned_cols=81 Identities=7% Similarity=-0.103 Sum_probs=58.0
Q ss_pred CCCCcceEEEecCCCeEEEEeC---------CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM 113 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~---------~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~ 113 (269)
....|.++ +++++..+||+.+ ..+.|..+|. .++++..-+-.+. .+.......|..+++++
T Consensus 45 ~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~---~t~~~~~~i~~p~------~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 45 GGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDP---QTHLPIADIELPE------GPRFLVGTYPWMTSLTP 114 (352)
T ss_pred ccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEEC---ccCcEEeEEccCC------CchhhccCccceEEECC
Confidence 34589997 7888899999999 8999999984 4555443332211 11112356788999999
Q ss_pred CCC-EEEEeCC-CCEEEEEeCC
Q 024317 114 KGN-IYVADKS-NHVIRKITNL 133 (269)
Q Consensus 114 ~G~-lyVaD~~-n~~I~~~~~~ 133 (269)
+|. |||++.. .+.|.++|..
T Consensus 115 dgk~l~V~n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 115 DNKTLLFYQFSPSPAVGVVDLE 136 (352)
T ss_pred CCCEEEEecCCCCCEEEEEECC
Confidence 997 9999965 7888888854
No 40
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.89 E-value=0.00039 Score=60.79 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=79.9
Q ss_pred ceEEEe--cCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC---
Q 024317 48 HSVIDR--PGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK--- 122 (269)
Q Consensus 48 ~giav~--~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~--- 122 (269)
.|+|+. ...+.||.+|..+++|-++|- +-+.....| .+.|.. ..+ =..|-+|.- -.++|||+=.
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~----~f~~~~~~g----~F~DP~-iPa-gyAPFnIqn-ig~~lyVtYA~qd 209 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKG----SFRPPPLPG----SFIDPA-LPA-GYAPFNVQN-LGGTLYVTYAQQD 209 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecC----ccccccCCC----CccCCC-CCC-CCCCcceEE-ECCeEEEEEEecC
Confidence 445553 225789999999999998852 222111111 122211 011 125666755 4688998743
Q ss_pred ----------CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC-----CCEEEEEECCCCeEEE
Q 024317 123 ----------SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH-----ICALLISDHGNQLIRQ 185 (269)
Q Consensus 123 ----------~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~-----~g~LyVaD~~n~~I~~ 185 (269)
+.+.|-+||.+|. .+++.. ..|+.||||++.|. .|.|+|...+.++|-.
T Consensus 210 ~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~--------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~Ina 275 (336)
T TIGR03118 210 ADRNDEVAGAGLGYVNVFTLNGQLLRRVASS--------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINA 275 (336)
T ss_pred CcccccccCCCcceEEEEcCCCcEEEEeccC--------------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEE
Confidence 3457889999998 556554 34999999999663 4789999999999999
Q ss_pred EECC-CCeEEE
Q 024317 186 INLK-PEDCSK 195 (269)
Q Consensus 186 ~~~~-~~~~~~ 195 (269)
|++. +..+..
T Consensus 276 FD~~sG~~~g~ 286 (336)
T TIGR03118 276 YDPQSGAQLGQ 286 (336)
T ss_pred ecCCCCceeee
Confidence 9986 444433
No 41
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.88 E-value=0.00073 Score=61.82 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=70.3
Q ss_pred CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCc
Q 024317 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLG 134 (269)
Q Consensus 56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g 134 (269)
.+-+||++.+.+.|..+|. .+.++...+..+ .+.+.++++.++|+ +||+.. .+.|.++|...
T Consensus 5 ~~l~~V~~~~~~~v~viD~---~t~~~~~~i~~~-------------~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~ 67 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDG---ATNKVVARIPTG-------------GAPHAGLKFSPDGRYLYVANR-DGTVSVIDLAT 67 (369)
T ss_dssp GGEEEEEEGGGTEEEEEET---TT-SEEEEEE-S-------------TTEEEEEE-TT-SSEEEEEET-TSEEEEEETTS
T ss_pred ccEEEEEecCCCEEEEEEC---CCCeEEEEEcCC-------------CCceeEEEecCCCCEEEEEcC-CCeEEEEECCc
Confidence 4556789999999999984 445444333221 11245678888888 999986 57999999654
Q ss_pred c---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317 135 V---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS 194 (269)
Q Consensus 135 ~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~ 194 (269)
. .++.- -..|.++++++++..+||++...+.+..++.......
T Consensus 68 ~~~v~~i~~-----------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 68 GKVVATIKV-----------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp SSEEEEEE------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred ccEEEEEec-----------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 3 33322 2468999999998899999999999999997765433
No 42
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.84 E-value=0.00018 Score=62.09 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=49.1
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK 122 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~ 122 (269)
.+..|.+++++|..+++||....+++|..+ +.+|++.....-. .+ -......+..|.|||+|++|+|||+.-
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~----d~~G~~~~~~~L~-~g---~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLEL----DRQGRVVSSLSLD-RG---FHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-----TT--EEEEEE-S-TT---GGG-SS---SEEEEEE-TT--EEEEET
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEE----CCCCCEEEEEEeC-Cc---ccCcccccCCccEEEECCCCCEEEEcC
Confidence 566899999999999999999999999999 5688866544210 00 011234678999999999999999986
Q ss_pred CCCEEEEE
Q 024317 123 SNHVIRKI 130 (269)
Q Consensus 123 ~n~~I~~~ 130 (269)
. |...+|
T Consensus 241 p-Nlfy~f 247 (248)
T PF06977_consen 241 P-NLFYRF 247 (248)
T ss_dssp T-TEEEEE
T ss_pred C-ceEEEe
Confidence 4 466666
No 43
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.79 E-value=0.0022 Score=56.67 Aligned_cols=176 Identities=16% Similarity=0.140 Sum_probs=93.5
Q ss_pred CcceEEEecCCCeEEEEeCCC------------CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSR------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM 113 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~------------~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~ 113 (269)
+..++.+| ..++|||.|.+. -+|..+|+ ..+..+.++. -...- ...-..-+++++|.
T Consensus 2 sV~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl--~t~~li~~~~-~p~~~-------~~~~s~lndl~VD~ 70 (287)
T PF03022_consen 2 SVQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDL--KTNQLIRRYP-FPPDI-------APPDSFLNDLVVDV 70 (287)
T ss_dssp -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEET--TTTCEEEEEE---CCC-------S-TCGGEEEEEEEC
T ss_pred cccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEEC--CCCcEEEEEE-CChHH-------cccccccceEEEEc
Confidence 35788995 799999999863 48999997 3344444432 11100 00122446788987
Q ss_pred C------CCEEEEeCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCc--cccccc---cCceEEEEeC---CCCEEEEEE
Q 024317 114 K------GNIYVADKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGP--AQNASF---SNDFELTFVP---HICALLISD 177 (269)
Q Consensus 114 ~------G~lyVaD~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~--~~~~~l---~~P~gia~~~---~~g~LyVaD 177 (269)
. +-.|++|....-|.++|- +|+ .++...... .....+. ..-..| ....||++++ ++..||..=
T Consensus 71 ~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~-~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ 149 (287)
T PF03022_consen 71 RDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFS-PDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHP 149 (287)
T ss_dssp TTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCT-TS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEE
T ss_pred cCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcc-eeccccceeccCceEecCCCccccccCCCCCCccEEEEEe
Confidence 2 459999999999999994 455 444433111 0000000 000112 2256789877 445899998
Q ss_pred CCCCeEEEEECCC---CeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317 178 HGNQLIRQINLKP---EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL 238 (269)
Q Consensus 178 ~~n~~I~~~~~~~---~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~ 238 (269)
..+.+++++...- ......... .......+.-.+...|+++|++|+||+++ ..+.+
T Consensus 150 lss~~ly~v~T~~L~~~~~~~~~~~-----~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI 209 (287)
T PF03022_consen 150 LSSRKLYRVPTSVLRDPSLSDAQAL-----ASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAI 209 (287)
T ss_dssp TT-SEEEEEEHHHHCSTT--HHH-H-----HHT-EEEEE---SECEEEEETTTEEEEEECCCTEE
T ss_pred CCCCcEEEEEHHHhhCccccccccc-----cccceeccccCCCCceEEECCCCcEEEecCCCCeE
Confidence 8888898887421 111000000 00000011011346899999999999999 33343
No 44
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.77 E-value=0.00082 Score=62.73 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=72.7
Q ss_pred cCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC------CCEE
Q 024317 102 RFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH------ICAL 173 (269)
Q Consensus 102 ~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~------~g~L 173 (269)
.|..|.+|++.++|++||++...++|++++.++. ..+.+..... .......+.|||++|+ ++.|
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~--------~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV--------NDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee--------ccCCCCceeeEEECCCccccCCCcEE
Confidence 4889999999999999999987789999987543 3443322110 0011456789999865 3579
Q ss_pred EEEEC---------CCCeEEEEECCCC------eEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317 174 LISDH---------GNQLIRQINLKPE------DCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 174 yVaD~---------~n~~I~~~~~~~~------~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
||+-+ ...+|.++..+.. ....+... +.+. --.-..|+++++|.|||+--+
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~l--P~~~---------~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGL--PAGN---------DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecC--CCCC---------CcCCceEEECCCCcEEEEECC
Confidence 99842 1468988876532 11111110 0000 011346889999999998744
No 45
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.74 E-value=0.00099 Score=63.55 Aligned_cols=80 Identities=13% Similarity=0.012 Sum_probs=55.3
Q ss_pred ccccCceEEEEeCCCCEEEEEECCCC-------------------eEEEEECCCC-------eEEEecccCcc---CCCc
Q 024317 156 ASFSNDFELTFVPHICALLISDHGNQ-------------------LIRQINLKPE-------DCSKSSQSGSA---LGAV 206 (269)
Q Consensus 156 ~~l~~P~gia~~~~~g~LyVaD~~n~-------------------~I~~~~~~~~-------~~~~~~~~g~~---~g~~ 206 (269)
..|..|-+|+++|..+.+||+-+.+. .|+++.+.+. ....+...+.+ ....
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 35999999999999899999988766 7999988765 22222211110 0011
Q ss_pred ccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317 207 SVWVLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 207 ~~~~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
........+.+|.+|++|++|+|||++..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~ 455 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGNLWIQEDG 455 (524)
T ss_pred cCcccCCCcCCCCceEECCCCCEEEEeCC
Confidence 11122346799999999999999999943
No 46
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.72 E-value=0.00072 Score=64.50 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=60.6
Q ss_pred CccCCCCcceEEEecCCCeEEEEeCCCC-------------------EEEEEecCCC----CCccEEEEEcCCccc----
Q 024317 40 GHQLEINPHSVIDRPGSSDLIVLDSSRS-------------------AFYTLSFPLS----EESVVKRLAGDGVQG---- 92 (269)
Q Consensus 40 g~~~~~~P~giav~~~~g~lyV~D~~~~-------------------~I~~~dl~~~----~~g~~~~~~g~g~~g---- 92 (269)
|...|..|++|++++.++.+||+-+++. +|++++..-. ...++..+.-.|.+.
T Consensus 345 GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~ 424 (524)
T PF05787_consen 345 GATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASG 424 (524)
T ss_pred ccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccc
Confidence 3447899999999999999999987666 7888864210 001232322222211
Q ss_pred CCCCCcccccCCCCceEEEcCCCCEEEEeCCC-CE--EEEEeCCcc
Q 024317 93 YSDGEPGSARFDKPKSFAVDMKGNIYVADKSN-HV--IRKITNLGV 135 (269)
Q Consensus 93 ~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n-~~--I~~~~~~g~ 135 (269)
..........|..|..|++|++|+|||+.-.. +. +.-..++|.
T Consensus 425 ~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~ 470 (524)
T PF05787_consen 425 NGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGE 470 (524)
T ss_pred cccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCc
Confidence 11122335779999999999999999987432 22 344455555
No 47
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.72 E-value=0.0002 Score=60.37 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK 122 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~ 122 (269)
...-|.|++++.+...+|+.|+.|..|..+|.+ -+.|.+..-. .-+.-...+...-..|.|+++|.+|+||||-+
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd-~~tG~~snr~----~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD-CPTGDLSNRK----VIFDLRKSQPFESLEPDGMTIDTEGNLYVATF 230 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecC-CCcccccCcc----eeEEeccCCCcCCCCCCcceEccCCcEEEEEe
Confidence 444689999976678899999999999666532 1334322100 00000000111223789999999999999999
Q ss_pred CCCEEEEEeCC-cc
Q 024317 123 SNHVIRKITNL-GV 135 (269)
Q Consensus 123 ~n~~I~~~~~~-g~ 135 (269)
...+|+++|+. |+
T Consensus 231 ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGK 244 (310)
T ss_pred cCcEEEEECCCCCc
Confidence 99999999974 54
No 48
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.55 E-value=0.02 Score=51.45 Aligned_cols=183 Identities=14% Similarity=0.080 Sum_probs=94.1
Q ss_pred CCCCcceEEEecCCCeEE-EEeCCC----CEEEEEecCCCCC--ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC
Q 024317 43 LEINPHSVIDRPGSSDLI-VLDSSR----SAFYTLSFPLSEE--SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG 115 (269)
Q Consensus 43 ~~~~P~giav~~~~g~ly-V~D~~~----~~I~~~dl~~~~~--g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G 115 (269)
.+..=+||++++.++.+| |+|.+. -+++.+++..+.. +.+... ....-...+|......---|++|++.++|
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTIL-DMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEec-cceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 344568899964455543 344433 2366665532111 111111 10000001222222122378999998899
Q ss_pred CEEEEeCCC------CEEEEEeCCcc--eEEecCCCCCCCCC--CCccccccccCceEEEEeCCCCEEEEEECCC-----
Q 024317 116 NIYVADKSN------HVIRKITNLGV--TTIAGGGSKKEGRA--DGPAQNASFSNDFELTFVPHICALLISDHGN----- 180 (269)
Q Consensus 116 ~lyVaD~~n------~~I~~~~~~g~--~~~~g~~~~~~~~~--~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n----- 180 (269)
.+||++-+. ++|++++.+|+ ..+.-......... .+...+ ...-+||+++++..||++-...
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N---~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNN---RGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCC---CCeEEEEECCCCCEEEEEECccccCCC
Confidence 999999999 99999999987 33311110000000 011111 2357899999855588765543
Q ss_pred ----------CeEEEEECCCC--eEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317 181 ----------QLIRQINLKPE--DCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 181 ----------~~I~~~~~~~~--~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
-||++++.... ....+...-....... .-..+..++.-++++++|-+..
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~------~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAP------GDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCcccccc------CCCCceeEEEECCCcEEEEEcc
Confidence 35666665531 1111111100000000 1144677888889999999954
No 49
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.50 E-value=0.012 Score=51.75 Aligned_cols=169 Identities=10% Similarity=-0.074 Sum_probs=89.0
Q ss_pred cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCC-CCcc---EEE-EEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317 42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLS-EESV---VKR-LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116 (269)
Q Consensus 42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~-~~g~---~~~-~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~ 116 (269)
..|.+|+||+++| .+.+||+|.+.+....+|...+ +.|. +.. +.+.+ ....-..|.|+++.....
T Consensus 20 p~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~---------~~~~~~~PTGiVfN~~~~ 89 (336)
T TIGR03118 20 PGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP---------PLAAEGTPTGQVFNGSDT 89 (336)
T ss_pred ccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCC---------CCCCCCCccEEEEeCCCc
Confidence 4678999999975 8899999999999988865211 1121 111 11110 011123688888865433
Q ss_pred EEEEeCCC---CEEEEEeCCcc-eEEecCCCCC---C---CCCCCccccccccCceEEEEeCC--CCEEEEEECCCCeEE
Q 024317 117 IYVADKSN---HVIRKITNLGV-TTIAGGGSKK---E---GRADGPAQNASFSNDFELTFVPH--ICALLISDHGNQLIR 184 (269)
Q Consensus 117 lyVaD~~n---~~I~~~~~~g~-~~~~g~~~~~---~---~~~~~~~~~~~l~~P~gia~~~~--~g~LyVaD~~n~~I~ 184 (269)
.-|+..+. .+-.....+|. .-+...-... . -.+++ ..-+ . =.|||+-.. ...||.+|..++||-
T Consensus 90 F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~ga-v--YkGLAi~~~~~~~~LYaadF~~g~ID 165 (336)
T TIGR03118 90 FVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGN-V--YKGLAVGPTGGGDYLYAANFRQGRID 165 (336)
T ss_pred eEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccC-CCcc-e--eeeeEEeecCCCceEEEeccCCCceE
Confidence 33333211 11222335555 4443221100 0 00000 0001 1 147777632 468999999999999
Q ss_pred EEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 185 QINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 185 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
+|+..-..+...+.. ..- ..+++ ..|.+|..- .++|||+=
T Consensus 166 VFd~~f~~~~~~g~F--~DP---~iPag---yAPFnIqni-g~~lyVtY 205 (336)
T TIGR03118 166 VFKGSFRPPPLPGSF--IDP---ALPAG---YAPFNVQNL-GGTLYVTY 205 (336)
T ss_pred EecCccccccCCCCc--cCC---CCCCC---CCCcceEEE-CCeEEEEE
Confidence 998766554432211 110 11222 457777655 47888774
No 50
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.48 E-value=0.016 Score=52.00 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=79.7
Q ss_pred CcceEEEecCCCeEEEEeCCC------CEEEEEecCCCCCccEEEEEcCCcccCC---CCCcccccCCCCceEEEcCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSR------SAFYTLSFPLSEESVVKRLAGDGVQGYS---DGEPGSARFDKPKSFAVDMKGN 116 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~------~~I~~~dl~~~~~g~~~~~~g~g~~g~~---dg~~~~~~~~~P~giavd~~G~ 116 (269)
.|++|++ +.++.+||++.+. ++|++++ .+|++.....-.. .+. .+......=...++|++.++|.
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~----~~G~~~~~~~vP~-~~~~~~~~~~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFD----LDGRVIRRFPVPA-AFLPDANGTSGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEEC----CCCcccceEcccc-ccccccCccccccCCCCeEEEEECCCCC
Confidence 8899999 6799999999999 9999994 5577644332111 010 0001111122458899999999
Q ss_pred -EEEEeCCC---------------CEEEEEeCC--cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE
Q 024317 117 -IYVADKSN---------------HVIRKITNL--GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS 176 (269)
Q Consensus 117 -lyVaD~~n---------------~~I~~~~~~--g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa 176 (269)
||++-... .||.+++.. +. ..+.-.-.. ......-..+++++..++ +.|||.
T Consensus 160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~-------~~~~~~~~~isd~~al~d-~~lLvL 231 (326)
T PF13449_consen 160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDP-------PPTAPGDNGISDIAALPD-GRLLVL 231 (326)
T ss_pred EEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCc-------cccccCCCCceeEEEECC-CcEEEE
Confidence 88876432 466777754 31 111111000 000002456788888887 789999
Q ss_pred ECC-------CCeEEEEECCCC
Q 024317 177 DHG-------NQLIRQINLKPE 191 (269)
Q Consensus 177 D~~-------n~~I~~~~~~~~ 191 (269)
+.. ..+|++++....
T Consensus 232 ER~~~~~~~~~~ri~~v~l~~a 253 (326)
T PF13449_consen 232 ERDFSPGTGNYKRIYRVDLSDA 253 (326)
T ss_pred EccCCCCccceEEEEEEEcccc
Confidence 987 345777776543
No 51
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.006 Score=55.91 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=96.2
Q ss_pred CcceEEEecCCCeEEEEeCCCCEE-EEEecCCCCCccEEEEEcCCcccC-CC---CCcccccCCCCceEEEcCC-CCEEE
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAF-YTLSFPLSEESVVKRLAGDGVQGY-SD---GEPGSARFDKPKSFAVDMK-GNIYV 119 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I-~~~dl~~~~~g~~~~~~g~g~~g~-~d---g~~~~~~~~~P~giavd~~-G~lyV 119 (269)
+-..|+++| +|.|||+-..+..- ..-|.. +..|++...--.+.-.. .+ ...-...+..|.|+++++. |.||+
T Consensus 178 ~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~-~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 178 FGGRLVFGP-DGKLYVTTGSNGDPALAQDNV-SLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred CcccEEECC-CCcEEEEeCCCCCcccccCcc-ccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 445688875 67999996544111 110100 23343333221111000 01 1112345789999999996 99999
Q ss_pred EeCCCCEEEEEe-----CCcc-----eEEecCCCCCCCCCCC----cccccc-----ccCceEEEEeCCC------CEEE
Q 024317 120 ADKSNHVIRKIT-----NLGV-----TTIAGGGSKKEGRADG----PAQNAS-----FSNDFELTFVPHI------CALL 174 (269)
Q Consensus 120 aD~~n~~I~~~~-----~~g~-----~~~~g~~~~~~~~~~~----~~~~~~-----l~~P~gia~~~~~------g~Ly 174 (269)
+|-+...++--| +.|. ....|..-.+....++ ...... -..|.||++-.-+ +.++
T Consensus 256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lf 335 (399)
T COG2133 256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLF 335 (399)
T ss_pred EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEE
Confidence 997764442111 2222 1111211111101111 000011 1346899987422 6899
Q ss_pred EEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC--CCCccc
Q 024317 175 ISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH--TGRLDP 240 (269)
Q Consensus 175 VaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~--~g~~~~ 240 (269)
|+..+...+.+.+++++........ -.+ . .-.+|.++++.+||.|||+|. +|++++
T Consensus 336 V~~hgsw~~~~~~~~g~~~~~~~~f--l~~-d-------~~gR~~dV~v~~DGallv~~D~~~g~i~R 393 (399)
T COG2133 336 VGAHGSWPVLRLRPDGNYKVVLTGF--LSG-D-------LGGRPRDVAVAPDGALLVLTDQGDGRILR 393 (399)
T ss_pred EEeecceeEEEeccCCCcceEEEEE--Eec-C-------CCCcccceEECCCCeEEEeecCCCCeEEE
Confidence 9999888788888888733222211 010 0 116899999999999999994 445553
No 52
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.43 E-value=0.0092 Score=50.54 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=60.1
Q ss_pred ccCCCCceEEEcCCCC-EEEEeCCCCEEEEEe---CCcc----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCE
Q 024317 101 ARFDKPKSFAVDMKGN-IYVADKSNHVIRKIT---NLGV----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICA 172 (269)
Q Consensus 101 ~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~---~~g~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~ 172 (269)
..+.-|+|++.|.+-. .|+.|+.|..|..++ +.|. ..+....... .-.-..|.|+++|.+ |+
T Consensus 155 ~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~---------~~e~~~PDGm~ID~e-G~ 224 (310)
T KOG4499|consen 155 NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ---------PFESLEPDGMTIDTE-GN 224 (310)
T ss_pred hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC---------CcCCCCCCcceEccC-Cc
Confidence 4466789999997554 999999999996665 3342 2333221100 011246899999986 99
Q ss_pred EEEEECCCCeEEEEECCCCeEEE
Q 024317 173 LLISDHGNQLIRQINLKPEDCSK 195 (269)
Q Consensus 173 LyVaD~~n~~I~~~~~~~~~~~~ 195 (269)
|||+-..+++|+++++..+.+..
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKILL 247 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEEE
Confidence 99999999999999988765443
No 53
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.41 E-value=0.0024 Score=60.16 Aligned_cols=85 Identities=13% Similarity=0.224 Sum_probs=53.6
Q ss_pred CccCCCCcceEEEecCCCeEEEEeCCCC----------------EEEEEecC----CCCCccEEEEEcCCcccCCCC---
Q 024317 40 GHQLEINPHSVIDRPGSSDLIVLDSSRS----------------AFYTLSFP----LSEESVVKRLAGDGVQGYSDG--- 96 (269)
Q Consensus 40 g~~~~~~P~giav~~~~g~lyV~D~~~~----------------~I~~~dl~----~~~~g~~~~~~g~g~~g~~dg--- 96 (269)
|...+..|++|++.|..+++|++.++|. +|++|--. .+...+...+.-.|.+...++
T Consensus 412 GAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~ 491 (616)
T COG3211 412 GATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS 491 (616)
T ss_pred CCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence 4457889999999988899999998776 35555211 011123333332222211111
Q ss_pred -CcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 97 -EPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 97 -~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
......|++|.+|++|+.|+|||+.-++
T Consensus 492 ~~~~~~~f~~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 492 ANINANWFNSPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred cCcccccccCCCceEECCCCCEEEEecCC
Confidence 1112669999999999999999987543
No 54
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.23 E-value=0.013 Score=56.36 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=59.6
Q ss_pred CCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCC-ccccccccCceEEEEeCCCCEEEEEECC
Q 024317 103 FDKPKSFAVDMKGN-IYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADG-PAQNASFSNDFELTFVPHICALLISDHG 179 (269)
Q Consensus 103 ~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~ 179 (269)
=.+|.||+++++|. +|++....+.|.++|.... ..+.+.-.. .+. .+....=..|...+++++ |+.|++=..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~----~~~vvaevevGlGPLHTaFDg~-G~aytslf~ 394 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP----RDAVVAEPELGLGPLHTAFDGR-GNAYTTLFL 394 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc----cceEEEeeccCCCcceEEECCC-CCEEEeEee
Confidence 35899999999999 9999998999999997654 333332100 000 000111247999999997 889999888
Q ss_pred CCeEEEEECCC
Q 024317 180 NQLIRQINLKP 190 (269)
Q Consensus 180 n~~I~~~~~~~ 190 (269)
...|.+|+.+.
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 89999999876
No 55
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.15 E-value=0.018 Score=55.50 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=47.1
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE----------EEecccCccCCCcccceeeeeccceeeEEEecCCc
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDC----------SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR 228 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~----------~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~ 228 (269)
.+|+|++++|++..+||+....+.|.+|+...... ...++. ..| ..|.-.++|.+|+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev--evG-----------lGPLHTaFDg~G~ 387 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP--ELG-----------LGPLHTAFDGRGN 387 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee--ccC-----------CCcceEEECCCCC
Confidence 67999999999889999999999999999876332 111111 111 4588899999999
Q ss_pred EEEEc
Q 024317 229 PYIIR 233 (269)
Q Consensus 229 lyVad 233 (269)
.|++=
T Consensus 388 aytsl 392 (635)
T PRK02888 388 AYTTL 392 (635)
T ss_pred EEEeE
Confidence 99885
No 56
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.10 E-value=0.041 Score=53.44 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=109.9
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK 122 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~ 122 (269)
.+..-..++++| +|.+.++-...++|..|| ...|........ +-+.-.++.+...|+..++-.
T Consensus 349 H~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn---~~SgfC~vTFte-------------Hts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 349 HSDRITSLAYSP-DGQLIATGAEDGKVKVWN---TQSGFCFVTFTE-------------HTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred cccceeeEEECC-CCcEEEeccCCCcEEEEe---ccCceEEEEecc-------------CCCceEEEEEEecCCEEEEee
Confidence 355667788864 788888888888888887 456654443222 233447899999999999999
Q ss_pred CCCEEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC-CCCeEEEEECCCCeEEEecc
Q 024317 123 SNHVIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH-GNQLIRQINLKPEDCSKSSQ 198 (269)
Q Consensus 123 ~n~~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~-~n~~I~~~~~~~~~~~~~~~ 198 (269)
-.++|+.+|- ..+ +++.... ..+| ++||+||. |.|.++-. ..-.|.+++...+.+.-.-.
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~------------p~Qf---scvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPE------------PIQF---SCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred cCCeEEeeeecccceeeeecCCC------------ceee---eEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 9999999983 444 5554321 1223 68999997 66665544 45568888877665543322
Q ss_pred cCccCCCcccceeeeeccceeeEEEecCCcEEEEc---CCCCccccc--ccccccccCCCC
Q 024317 199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR---HTGRLDPPL--QHDMEALPNQSG 254 (269)
Q Consensus 199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad---~~g~~~~~~--~~~~~~~~~~~~ 254 (269)
.+ . ....++++++.|.+.++- .+.|+|.-. .+..|.++..+.
T Consensus 476 GH---E-----------gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd 522 (893)
T KOG0291|consen 476 GH---E-----------GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD 522 (893)
T ss_pred CC---C-----------CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence 20 0 224678999999776665 678888766 346666665543
No 57
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=97.01 E-value=0.01 Score=42.51 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=29.5
Q ss_pred ccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317 158 FSNDFELTFVPHICALLISDHGNQLIRQINLK 189 (269)
Q Consensus 158 l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~ 189 (269)
|..|+||++++++..|||++...+.|+++...
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 88999999999989999999999999998764
No 58
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.99 E-value=0.0024 Score=38.75 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=31.9
Q ss_pred cccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 157 SFSNDFELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 157 ~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
.+..|++|++++.++.||.+|...+.|.+.+.+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 37889999999998999999999999999998875
No 59
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.87 E-value=0.13 Score=44.70 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=90.8
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
+-+||++ .++.||..-+.++..+++|.. .-..+.++.-. ....|++.| ...||++|. ++
T Consensus 91 FgEGit~--~~d~l~qLTWk~~~~f~yd~~--tl~~~~~~~y~---------------~EGWGLt~d-g~~Li~SDG-S~ 149 (264)
T PF05096_consen 91 FGEGITI--LGDKLYQLTWKEGTGFVYDPN--TLKKIGTFPYP---------------GEGWGLTSD-GKRLIMSDG-SS 149 (264)
T ss_dssp -EEEEEE--ETTEEEEEESSSSEEEEEETT--TTEEEEEEE-S---------------SS--EEEEC-SSCEEEE-S-SS
T ss_pred cceeEEE--ECCEEEEEEecCCeEEEEccc--cceEEEEEecC---------------CcceEEEcC-CCEEEEECC-cc
Confidence 5688998 589999999999999999852 22223333211 133678864 446999996 78
Q ss_pred EEEEEeCCcc---eEE--ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC
Q 024317 126 VIRKITNLGV---TTI--AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG 200 (269)
Q Consensus 126 ~I~~~~~~g~---~~~--~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g 200 (269)
+++.+||..- .++ ...+ ..+..-|-|-.. +|.||.--...++|.+|++..+.+...-.-.
T Consensus 150 ~L~~~dP~~f~~~~~i~V~~~g-------------~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 150 RLYFLDPETFKEVRTIQVTDNG-------------RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp EEEEE-TTT-SEEEEEE-EETT-------------EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-H
T ss_pred ceEEECCcccceEEEEEEEECC-------------EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhh
Confidence 9999998642 222 1111 113444566655 3899999999999999999998876644221
Q ss_pred ---ccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc
Q 024317 201 ---SALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL 242 (269)
Q Consensus 201 ---~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~ 242 (269)
........ ....-...+|||.|+.. ++||+ |..|...
T Consensus 215 ~L~~~~~~~~~--~~~~~dVLNGIAyd~~~~~l~vT---GK~Wp~l 255 (264)
T PF05096_consen 215 GLRPEVGRDKS--RQPDDDVLNGIAYDPETDRLFVT---GKLWPKL 255 (264)
T ss_dssp HHHHHHTSTTS--T--TTS-EEEEEEETTTTEEEEE---ETT-SEE
T ss_pred Hhhhccccccc--ccccCCeeEeEeEeCCCCEEEEE---eCCCCce
Confidence 00000000 00012458999999777 88887 4445443
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.86 E-value=0.21 Score=41.52 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=65.7
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~ 126 (269)
...+++.+ ++.++++....+.|..+|+. +++...... ..-..+..+++++++.++++-..++.
T Consensus 96 i~~~~~~~-~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 96 VSSVAFSP-DGRILSSSSRDKTIKVWDVE---TGKCLTTLR-------------GHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred EEEEEEcC-CCCEEEEecCCCeEEEEECC---CcEEEEEec-------------cCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 45566643 35555555556666666541 222222110 11224678889888887776666778
Q ss_pred EEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 127 IRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 127 I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
|+.++.. +. ..+... -.....+++++++..++++.. ++.|+.++....
T Consensus 159 i~i~d~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~ 209 (289)
T cd00200 159 IKLWDLRTGKCVATLTGH----------------TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG 209 (289)
T ss_pred EEEEEccccccceeEecC----------------ccccceEEECCCcCEEEEecC-CCcEEEEECCCC
Confidence 8888864 33 222211 124578898887446777665 788999998754
No 61
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=96.84 E-value=0.0059 Score=37.51 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=32.2
Q ss_pred CCEEEEeCCCC-EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeC
Q 024317 115 GNIYVADKSNH-VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVP 168 (269)
Q Consensus 115 G~lyVaD~~n~-~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~ 168 (269)
++||.+|...+ +|.+.+.+|. ..+... .+..|.|||+++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~---------------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD---------------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES---------------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC---------------CCCCcCEEEECC
Confidence 57999999999 9999999998 555432 288999999985
No 62
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.023 Score=52.14 Aligned_cols=135 Identities=15% Similarity=0.139 Sum_probs=77.7
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCEEEEEec-CCCCCccEE----EEEcCCcccCC-CCCccc----------ccCCCCc
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSF-PLSEESVVK----RLAGDGVQGYS-DGEPGS----------ARFDKPK 107 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl-~~~~~g~~~----~~~g~g~~g~~-dg~~~~----------~~~~~P~ 107 (269)
..+|.|++++|..|.||+++.+...+.--|- ..-+.|... ...|.-..+.. ...... ..-..|.
T Consensus 238 ~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~Aps 317 (399)
T COG2133 238 HRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPS 317 (399)
T ss_pred cCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccc
Confidence 4589999999888999999987755411110 000112111 00010000000 000001 1123568
Q ss_pred eEEEcCC-------CCEEEEeCCCCEEEEEeCCcc-eEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC
Q 024317 108 SFAVDMK-------GNIYVADKSNHVIRKITNLGV-TTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH 178 (269)
Q Consensus 108 giavd~~-------G~lyVaD~~n~~I~~~~~~g~-~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~ 178 (269)
||++-.- +.+||+--+.-.+.+.+++|. +.+ .+.-... .-..|.+|++.+| |.|||+|-
T Consensus 318 GmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d-----------~~gR~~dV~v~~D-Gallv~~D 385 (399)
T COG2133 318 GMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGD-----------LGGRPRDVAVAPD-GALLVLTD 385 (399)
T ss_pred eeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecC-----------CCCcccceEECCC-CeEEEeec
Confidence 9999532 579999877766777888876 222 2211000 0157999999998 89998888
Q ss_pred C-CCeEEEEECCC
Q 024317 179 G-NQLIRQINLKP 190 (269)
Q Consensus 179 ~-n~~I~~~~~~~ 190 (269)
. +++|+|++..+
T Consensus 386 ~~~g~i~Rv~~~~ 398 (399)
T COG2133 386 QGDGRILRVSYAG 398 (399)
T ss_pred CCCCeEEEecCCC
Confidence 7 77999998654
No 63
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.73 E-value=0.029 Score=57.17 Aligned_cols=147 Identities=17% Similarity=0.117 Sum_probs=106.1
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEe
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD 121 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD 121 (269)
...|.+++++-..+++|.+|.....|.+.++ +|.. .+++. ..+..|..+++++ .|.+|.+|
T Consensus 479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~----~g~~~~vl~~-------------~~l~~~r~~~v~p~~g~~~wtd 541 (877)
T KOG1215|consen 479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADL----DGSSRKVLVS-------------KDLDLPRSIAVDPEKGLMFWTD 541 (877)
T ss_pred ccccCcEEEEeccCCceecccCCceeEEEEc----cCCceeEEEe-------------cCCCCccceeeccccCeeEEec
Confidence 4579999998778999999999999998854 3322 22221 1246899999998 77899999
Q ss_pred CC-CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC-eEEEEECCCCeEEEec
Q 024317 122 KS-NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ-LIRQINLKPEDCSKSS 197 (269)
Q Consensus 122 ~~-n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~-~I~~~~~~~~~~~~~~ 197 (269)
.+ ..+|.+-..+|. ..+... .+..|+|++++-....+|-+|.... .|.+++.++.......
T Consensus 542 ~~~~~~i~ra~~dg~~~~~l~~~---------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~ 606 (877)
T KOG1215|consen 542 WGQPPRIERASLDGSERAVLVTN---------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVD 606 (877)
T ss_pred CCCCchhhhhcCCCCCceEEEeC---------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEec
Confidence 87 457777778887 333322 1578999999998899999999888 6888888887664111
Q ss_pred ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCC
Q 024317 198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGR 237 (269)
Q Consensus 198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~ 237 (269)
.. .+..|.++++- ..++|-.|-..+
T Consensus 607 ~~--------------~~~~p~~~~~~-~~~iyw~d~~~~ 631 (877)
T KOG1215|consen 607 SE--------------DLPHPFGLSVF-EDYIYWTDWSNR 631 (877)
T ss_pred cc--------------cCCCceEEEEe-cceeEEeecccc
Confidence 11 33557777777 456777774433
No 64
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.68 E-value=0.11 Score=45.02 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=73.8
Q ss_pred CCCcceEEEecCCCeEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317 44 EINPHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD 121 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD 121 (269)
-.+-.|+.+. .+|.+|.+... ..+|.++|+ .+|++.....-. .-.+-.||++ -++.||..-
T Consensus 44 ~aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~---~tg~~~~~~~l~------------~~~FgEGit~-~~d~l~qLT 106 (264)
T PF05096_consen 44 TAFTQGLEFL-DDGTLYESTGLYGQSSLRKVDL---ETGKVLQSVPLP------------PRYFGEGITI-LGDKLYQLT 106 (264)
T ss_dssp T-EEEEEEEE-ETTEEEEEECSTTEEEEEEEET---TTSSEEEEEE-T------------TT--EEEEEE-ETTEEEEEE
T ss_pred cccCccEEec-CCCEEEEeCCCCCcEEEEEEEC---CCCcEEEEEECC------------ccccceeEEE-ECCEEEEEE
Confidence 3467899984 47999999874 457999986 466665443211 1125589999 477899999
Q ss_pred CCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 122 KSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 122 ~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
+.+++..++|++.- .++.-. ..-+||+.+. ..||++|. +.+|+.+++..
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~~y~-----------------~EGWGLt~dg--~~Li~SDG-S~~L~~~dP~~ 158 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTFPYP-----------------GEGWGLTSDG--KRLIMSDG-SSRLYFLDPET 158 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEEE-S-----------------SS--EEEECS--SCEEEE-S-SSEEEEE-TTT
T ss_pred ecCCeEEEEccccceEEEEEecC-----------------CcceEEEcCC--CEEEEECC-ccceEEECCcc
Confidence 99999999998754 222111 2358999553 68999997 67899999875
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.47 Score=41.69 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
.-.+|.++| .++.|++-+....|+.||++. ++-+.. ..+..+--.|+|++|.+|.+-.+++
T Consensus 102 ~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~-~~cqg~-----------------l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 102 RVNSLSVSP-KDDTFLSSSLDKTVRLWDLRV-KKCQGL-----------------LNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred eEEEEEecC-CCCeEEecccCCeEEeeEecC-CCCceE-----------------EecCCCcceeECCCCcEEEEecCCC
Confidence 457788887 558999988888999998752 111111 1233555699999999999988888
Q ss_pred EEEEEeCCc----c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 126 VIRKITNLG----V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 126 ~I~~~~~~g----~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
.|..+|... - .++.- .. .....=++|-+++++..|+++.. ++.++.++.=.
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i-~~------------~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~ 218 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSI-TD------------NDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFD 218 (311)
T ss_pred eEEEEEecccCCCCceeEcc-CC------------CCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccC
Confidence 999998421 1 22111 00 11233468999998667777766 45677776433
No 66
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=96.57 E-value=0.014 Score=35.75 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=33.2
Q ss_pred CEEEEEECCCC-eEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec
Q 024317 171 CALLISDHGNQ-LIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF 225 (269)
Q Consensus 171 g~LyVaD~~n~-~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~ 225 (269)
++||.+|...+ +|.+.+.+|......... .+..|.|||+|.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~--------------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD--------------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES--------------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC--------------CCCCcCEEEECC
Confidence 47999999999 999999999875544433 358899999984
No 67
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.46 E-value=0.029 Score=53.08 Aligned_cols=129 Identities=16% Similarity=0.226 Sum_probs=66.4
Q ss_pred ccCCCCceEEEcC-CCCEEEEeCCCC----------------EEEEEeCCc--------c-eEEecCCCCC--CCCCCCc
Q 024317 101 ARFDKPKSFAVDM-KGNIYVADKSNH----------------VIRKITNLG--------V-TTIAGGGSKK--EGRADGP 152 (269)
Q Consensus 101 ~~~~~P~giavd~-~G~lyVaD~~n~----------------~I~~~~~~g--------~-~~~~g~~~~~--~~~~~~~ 152 (269)
..+.+|++|++.+ .|++|++.+.|. +|.++-+.. . ..++-.+... -......
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~ 493 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN 493 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence 5589999999987 678999998765 345444322 2 2222111111 0000111
Q ss_pred cccccccCceEEEEeCCCCEEEEEECCCCe-EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEE
Q 024317 153 AQNASFSNDFELTFVPHICALLISDHGNQL-IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPY 230 (269)
Q Consensus 153 ~~~~~l~~P~gia~~~~~g~LyVaD~~n~~-I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~ly 230 (269)
....-|..|.+|++++. |+|||+.-++.. ..-+ .+|-. .....+...+.......+..-+...|.|+.+|+ .+|
T Consensus 494 ~~~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~-~~G~~--~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF 569 (616)
T COG3211 494 INANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNR-FRGVT--QMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF 569 (616)
T ss_pred cccccccCCCceEECCC-CCEEEEecCCCCccCcc-ccccc--ccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence 22245899999999998 889876544321 1110 00100 000010111211111122122457899999999 666
Q ss_pred EEc
Q 024317 231 IIR 233 (269)
Q Consensus 231 Vad 233 (269)
|.=
T Consensus 570 V~v 572 (616)
T COG3211 570 VNV 572 (616)
T ss_pred EEe
Confidence 653
No 68
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.45 E-value=0.16 Score=46.44 Aligned_cols=125 Identities=15% Similarity=0.175 Sum_probs=73.6
Q ss_pred CCCCcceEEEe--cCCCeEEE--EeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCE
Q 024317 43 LEINPHSVIDR--PGSSDLIV--LDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNI 117 (269)
Q Consensus 43 ~~~~P~giav~--~~~g~lyV--~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~l 117 (269)
.+..|+|+|+. +..|.+|+ .+. .+++..+.+..+.+|.+.... ...+ ..-..|+|+++|. .|.|
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~k-~G~~~Qy~L~~~~~g~v~~~l---VR~f-------~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNGK-DGRVEQYELTDDGDGKVSATL---VREF-------KVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEET-TSEEEEEEEEE-TTSSEEEEE---EEEE-------E-SS-EEEEEEETTTTEE
T ss_pred ccccceeeEEeecCCCCcEEEEEecC-CceEEEEEEEeCCCCcEeeEE---EEEe-------cCCCcceEEEEecccCCE
Confidence 34568999974 33455544 443 467777766434455432110 0000 0123689999997 6779
Q ss_pred EEEeCCCCEEEEEeCC--c-c--eEEecCCCCCCCCCCCccccccc-cCceEEEEeC---CCCEEEEEECCCCeEEEEEC
Q 024317 118 YVADKSNHVIRKITNL--G-V--TTIAGGGSKKEGRADGPAQNASF-SNDFELTFVP---HICALLISDHGNQLIRQINL 188 (269)
Q Consensus 118 yVaD~~n~~I~~~~~~--g-~--~~~~g~~~~~~~~~~~~~~~~~l-~~P~gia~~~---~~g~LyVaD~~n~~I~~~~~ 188 (269)
||++- +.-|++++.+ + . ..+...... .| .-.-||++-. ..|+|+|++.+++...+|+.
T Consensus 223 YvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~------------~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 223 YVGEE-DVGIWRYDAEPEGGNDRTLVASADGD------------GLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEET-TTEEEEEESSCCC-S--EEEEEBSSS------------SB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred EEecC-ccEEEEEecCCCCCCcceeeeccccc------------ccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 99996 5789999854 3 2 233211111 12 2457888843 24789999999999999998
Q ss_pred CCC
Q 024317 189 KPE 191 (269)
Q Consensus 189 ~~~ 191 (269)
.+.
T Consensus 290 ~~~ 292 (381)
T PF02333_consen 290 EGP 292 (381)
T ss_dssp STT
T ss_pred CCC
Confidence 874
No 69
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.36 Score=45.43 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=81.1
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
-.++++.+ ++.+.++-+...+|+.+|+ ..++. +.++.|. .+...++++.++|+++++=...+
T Consensus 206 v~~~~fs~-d~~~l~s~s~D~tiriwd~--~~~~~~~~~l~gH--------------~~~v~~~~f~p~g~~i~Sgs~D~ 268 (456)
T KOG0266|consen 206 VSDVAFSP-DGSYLLSGSDDKTLRIWDL--KDDGRNLKTLKGH--------------STYVTSVAFSPDGNLLVSGSDDG 268 (456)
T ss_pred eeeeEECC-CCcEEEEecCCceEEEeec--cCCCeEEEEecCC--------------CCceEEEEecCCCCEEEEecCCC
Confidence 46678864 7777888778888888875 34544 4455433 34558899999999999888889
Q ss_pred EEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 126 VIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 126 ~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
.|+..+.. |+ ..+.+.. ..-++++++++ ++++++-...+.|+.++......
T Consensus 269 tvriWd~~~~~~~~~l~~hs----------------~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHS----------------DGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred cEEEEeccCCeEEEeeeccC----------------CceEEEEECCC-CCEEEEcCCCccEEEEECCCCce
Confidence 99999854 44 4444432 23478999998 55555556689999999988874
No 70
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.40 E-value=0.36 Score=42.84 Aligned_cols=145 Identities=11% Similarity=0.123 Sum_probs=78.5
Q ss_pred cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCC--ccc---ccCCCCceEEEcCCCC
Q 024317 42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGE--PGS---ARFDKPKSFAVDMKGN 116 (269)
Q Consensus 42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~--~~~---~~~~~P~giavd~~G~ 116 (269)
..|..|.|+++ ..+.||++- ..+|+++.. .+.... .+....+| |.- +.. ..--.-++|++ .++.
T Consensus 46 r~F~r~MGl~~--~~~~l~~~t--~~qiw~f~~---~~n~l~--~~~~~~~~-D~~yvPr~~~~TGdidiHdia~-~~~~ 114 (335)
T TIGR03032 46 RTFPRPMGLAV--SPQSLTLGT--RYQLWRFAN---VDNLLP--AGQTHPGY-DRLYVPRASYVTGDIDAHDLAL-GAGR 114 (335)
T ss_pred eccCccceeee--eCCeEEEEE--cceeEEccc---cccccc--ccccCCCC-CeEEeeeeeeeccCcchhheee-cCCc
Confidence 46889999999 479999997 577887710 011000 00000011 000 000 01113467888 6788
Q ss_pred EEEEeCCCCEEEEEeCCcc-e-EE----ecC---------------------------CCCCCCCCC-----C-------
Q 024317 117 IYVADKSNHVIRKITNLGV-T-TI----AGG---------------------------GSKKEGRAD-----G------- 151 (269)
Q Consensus 117 lyVaD~~n~~I~~~~~~g~-~-~~----~g~---------------------------~~~~~~~~~-----~------- 151 (269)
+||.++.-+++-.+++... . .+ +.. .....+..+ |
T Consensus 115 l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s 194 (335)
T TIGR03032 115 LLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPS 194 (335)
T ss_pred EEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCC
Confidence 9999988788887776543 1 11 110 000000000 0
Q ss_pred -ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC-CCeEEEeccc
Q 024317 152 -PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK-PEDCSKSSQS 199 (269)
Q Consensus 152 -~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~-~~~~~~~~~~ 199 (269)
......|..|.+--.- +|.|||+|.+.+.|.+++++ |.......-+
T Consensus 195 ~evl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vp 242 (335)
T TIGR03032 195 GEVVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP 242 (335)
T ss_pred CCEEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECC
Confidence 0111124555555432 38999999999999999997 6655554444
No 71
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.32 E-value=0.07 Score=54.40 Aligned_cols=143 Identities=18% Similarity=0.186 Sum_probs=101.1
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEE-EEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKR-LAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKS 123 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~-~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~ 123 (269)
.+..+.++..++.+|-+|..-.+|.+.. .++.... +.+ .....|.++++|- .+++|.+|..
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~----~~~~~~~~~~~-------------~g~~~~~~lavD~~~~~~y~tDe~ 500 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRAS----QDGSSECELCG-------------DGLCIPEGLAVDWIGDNIYWTDEG 500 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeec----cCCCccceEec-------------cCccccCcEEEEeccCCceecccC
Confidence 4444455445678888888888888763 2332221 222 2356889999997 7779999999
Q ss_pred CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEEecccC
Q 024317 124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSKSSQSG 200 (269)
Q Consensus 124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~~~~~g 200 (269)
+..|.+.+.+|. ..+.... +..|..++++|..+.+|.+|.+ ..+|-+-..++.........
T Consensus 501 ~~~i~v~~~~g~~~~vl~~~~---------------l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~- 564 (877)
T KOG1215|consen 501 NCLIEVADLDGSSRKVLVSKD---------------LDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN- 564 (877)
T ss_pred CceeEEEEccCCceeEEEecC---------------CCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC-
Confidence 999999997775 4444431 4679999999999999999997 44687877777655443333
Q ss_pred ccCCCcccceeeeeccceeeEEEecCC-cEEEEcC
Q 024317 201 SALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH 234 (269)
Q Consensus 201 ~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~ 234 (269)
.+..|.|++.|... .+|-+|.
T Consensus 565 -------------~~~~p~glt~d~~~~~~yw~d~ 586 (877)
T KOG1215|consen 565 -------------GILWPNGLTIDYETDRLYWADA 586 (877)
T ss_pred -------------CccCCCcceEEeecceeEEEcc
Confidence 13558888888776 7888873
No 72
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.14 Score=44.81 Aligned_cols=127 Identities=9% Similarity=0.084 Sum_probs=76.6
Q ss_pred CcceEEEecCCCeEEEEeCCC-CEEEEEecCCCCCccEEEEEcCCcccCCCCCc-ccccCCCCceEEEcC-CCCEEEEeC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEP-GSARFDKPKSFAVDM-KGNIYVADK 122 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~-~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~-~~~~~~~P~giavd~-~G~lyVaD~ 122 (269)
.=+|+|.++.+..+||+-..+ -+|+.++. +++.--..... +-.. ..-.+..-.|+.+|+ .+.|+|.-.
T Consensus 182 GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~--~~~~l~~~~~~-------~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ 252 (316)
T COG3204 182 GFEGLAWDPVDHRLFVAKERNPIGIFEVTQ--SPSSLSVHASL-------DPTADRDLFVLDVSGLEFNAITNSLLVLSD 252 (316)
T ss_pred CceeeecCCCCceEEEEEccCCcEEEEEec--CCccccccccc-------CcccccceEeeccccceecCCCCcEEEEec
Confidence 457899988888899986543 56776642 11111111100 0000 011244557788886 677999888
Q ss_pred CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317 123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK 189 (269)
Q Consensus 123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~ 189 (269)
..+++..++.+|. ......-.+..+ ......+|.|||.|++ |+|||+..- +..++|.+.
T Consensus 253 ESr~l~Evd~~G~~~~~lsL~~g~~g------L~~dipqaEGiamDd~-g~lYIvSEP-nlfy~F~~~ 312 (316)
T COG3204 253 ESRRLLEVDLSGEVIELLSLTKGNHG------LSSDIPQAEGIAMDDD-GNLYIVSEP-NLFYRFTPQ 312 (316)
T ss_pred CCceEEEEecCCCeeeeEEeccCCCC------CcccCCCcceeEECCC-CCEEEEecC-CcceecccC
Confidence 8999999999887 222222111111 1123567899999987 999987764 457777654
No 73
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=96.19 E-value=0.033 Score=39.89 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=43.7
Q ss_pred hhhhccceecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317 19 FSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (269)
Q Consensus 19 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl 74 (269)
+.+.-+.+..-++..++...+| +..|.||++++++..|||++...+.|..++.
T Consensus 31 l~~~~~~Vvyyd~~~~~~va~g---~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 31 LGLPWGNVVYYDGKEVKVVASG---FSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred hcCCCceEEEEeCCEeEEeecc---CCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 3446777888888888887654 5699999999888999999999999998853
No 74
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.06 E-value=0.59 Score=45.79 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=75.2
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC-CC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK-SN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~-~n 124 (269)
.-+++.+. ..++..++.+-.++|..+|+. .-..+.++... ...+| ..+++|+.|.|.+|-. ..
T Consensus 394 ~Vt~v~f~-~~g~~llssSLDGtVRAwDlk--RYrNfRTft~P----------~p~Qf---scvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 394 GVTAVQFT-ARGNVLLSSSLDGTVRAWDLK--RYRNFRTFTSP----------EPIQF---SCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred ceEEEEEE-ecCCEEEEeecCCeEEeeeec--ccceeeeecCC----------Cceee---eEEEEcCCCCEEEeeccce
Confidence 45667785 689999999999999999862 22223333211 11222 4699999999777654 45
Q ss_pred CEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 125 HVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 125 ~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
..|.+++ +.|+ ..+.|...+ ..+|++++. ++++++-.-...|+.++.-.
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgP----------------Vs~l~f~~~-~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGP----------------VSGLSFSPD-GSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCc----------------ceeeEEccc-cCeEEeccccceEEEEEeec
Confidence 6788887 5666 555655321 258999998 67777777677888887544
No 75
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.00 E-value=0.021 Score=34.46 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=29.1
Q ss_pred cCCCCceEEEcCC-CCEEEEeCCCCEEEEEeCCcc
Q 024317 102 RFDKPKSFAVDMK-GNIYVADKSNHVIRKITNLGV 135 (269)
Q Consensus 102 ~~~~P~giavd~~-G~lyVaD~~n~~I~~~~~~g~ 135 (269)
.+..|+++++|+. +.||.+|...++|.+.+-+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 4679999999985 559999999999999987763
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.93 Score=39.88 Aligned_cols=127 Identities=10% Similarity=0.049 Sum_probs=82.0
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK 122 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~ 122 (269)
.+..+--.|+| .+|-++.+-.++..|..+|++.-..|-..++.=. ......=+.|-+.++|...+.-+
T Consensus 139 ~~~~~pi~AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-----------~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 139 NLSGRPIAAFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-----------DNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred ecCCCcceeEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccC-----------CCCccceeeeEEcCCCCEEEEEe
Confidence 34445556775 4888888888888999998764334444443200 01223346788989999555555
Q ss_pred CCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317 123 SNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK 195 (269)
Q Consensus 123 ~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~ 195 (269)
.++.+..+| .+|. .++.+... ..+.|-+-++.|+ +..+++-.++++|..++.+.+..+.
T Consensus 207 ~~s~~~~lDAf~G~~~~tfs~~~~-------------~~~~~~~a~ftPd-s~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 207 NASFIYLLDAFDGTVKSTFSGYPN-------------AGNLPLSATFTPD-SKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred CCCcEEEEEccCCcEeeeEeeccC-------------CCCcceeEEECCC-CcEEEEecCCCcEEEEEcCCCcEee
Confidence 677888887 4665 55554321 1345677888898 6666666778999999987654433
No 77
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.82 E-value=0.23 Score=45.39 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC--CccEEEEEcCCcccCCCCCcccccCCCCceEEE--cC--CCCEE
Q 024317 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE--ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV--DM--KGNIY 118 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~--~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giav--d~--~G~ly 118 (269)
..|+|+++|+..+.|||++.. .-||+++..... .+++...+. + .+ ...-..||++ .. +|.|+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~-g-~~---------l~aDvEGlaly~~~~g~gYLi 275 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASAD-G-DG---------LVADVEGLALYYGSDGKGYLI 275 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBS-S-SS---------B-S-EEEEEEEE-CCC-EEEE
T ss_pred CcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeeccc-c-cc---------cccCccceEEEecCCCCeEEE
Confidence 469999999989999999974 689999874322 222222211 1 01 1234577877 33 45699
Q ss_pred EEeCCCCEEEEEeCCcc
Q 024317 119 VADKSNHVIRKITNLGV 135 (269)
Q Consensus 119 VaD~~n~~I~~~~~~g~ 135 (269)
|++.+++...+|+..+.
T Consensus 276 vSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEGGGTEEEEEESSTT
T ss_pred EEcCCCCeEEEEecCCC
Confidence 99999999999997763
No 78
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=1.1 Score=37.54 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=92.9
Q ss_pred CCCcceEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEE--------EEcCCccc---------CCCCCc------
Q 024317 44 EINPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKR--------LAGDGVQG---------YSDGEP------ 98 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~--------~~g~g~~g---------~~dg~~------ 98 (269)
-.+..|+.. .+|++|.+-. +..+|+++|+. +|++.. +.|.|... +.+|..
T Consensus 45 ~sfTQGL~~--~~g~i~esTG~yg~S~ir~~~L~---~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~ 119 (262)
T COG3823 45 TSFTQGLEY--LDGHILESTGLYGFSKIRVSDLT---TGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD 119 (262)
T ss_pred hhhhcceee--eCCEEEEeccccccceeEEEecc---CceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChH
Confidence 346788888 4679998865 77889999873 344332 22333211 112211
Q ss_pred ---ccccCCCC---ceEEEcCCCCEEEEeCCCCEEEEEeCCc-----ceEEecCCCCCCCCCCCccccccccCceEEEEe
Q 024317 99 ---GSARFDKP---KSFAVDMKGNIYVADKSNHVIRKITNLG-----VTTIAGGGSKKEGRADGPAQNASFSNDFELTFV 167 (269)
Q Consensus 99 ---~~~~~~~P---~giavd~~G~lyVaD~~n~~I~~~~~~g-----~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~ 167 (269)
....|+.+ .|++-| +.+|+.+|. +..++..||.. +..+...+.+ ...-+-+-..
T Consensus 120 t~~~lg~~~y~GeGWgLt~d-~~~LimsdG-satL~frdP~tfa~~~~v~VT~~g~p-------------v~~LNELE~V 184 (262)
T COG3823 120 TLEELGRFSYEGEGWGLTSD-DKNLIMSDG-SATLQFRDPKTFAELDTVQVTDDGVP-------------VSKLNELEWV 184 (262)
T ss_pred HhhhhcccccCCcceeeecC-CcceEeeCC-ceEEEecCHHHhhhcceEEEEECCee-------------cccccceeee
Confidence 11334444 344443 233777774 55677666642 1111211111 1222334333
Q ss_pred CCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc
Q 024317 168 PHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL 242 (269)
Q Consensus 168 ~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~ 242 (269)
+ |.||.-=....+|.+++++.+.++..-.-..-..... ........++|||.++++ ++|++ |.+|...
T Consensus 185 -d-G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~--~~~~~~nvlNGIA~~~~~~r~~iT---GK~wp~l 253 (262)
T COG3823 185 -D-GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELN--LDKSNDNVLNGIAHDPQQDRFLIT---GKLWPLL 253 (262)
T ss_pred -c-cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcC--ccccccccccceeecCcCCeEEEe---cCcCcee
Confidence 2 7888777778899999999887766543210111000 111123568999999999 88887 4455443
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.59 E-value=1.1 Score=37.08 Aligned_cols=111 Identities=18% Similarity=0.257 Sum_probs=66.5
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~n 124 (269)
.-..+++++ +++++++-..++.|..+++. .........+. ..+ ..+.+.++++.+++-..+
T Consensus 11 ~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~--~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 11 GVTCVAFSP-DGKLLATGSGDGTIKVWDLE--TGELLRTLKGH---------------TGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred CEEEEEEcC-CCCEEEEeecCcEEEEEEee--CCCcEEEEecC---------------CcceeEEEECCCCCEEEEEcCC
Confidence 346778865 44555554457788888752 22222222111 122 478888888655555557
Q ss_pred CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 125 HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 125 ~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
+.|+.++.... ..+... -..+..+.++++ +.++++...++.|..++....
T Consensus 73 ~~i~i~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 73 KTIRLWDLETGECVRTLTGH----------------TSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred CeEEEEEcCcccceEEEecc----------------CCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCc
Confidence 88888886542 333221 124577888887 677777766788999988743
No 80
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.09 E-value=0.16 Score=30.45 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=29.1
Q ss_pred cCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEc
Q 024317 54 PGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD 112 (269)
Q Consensus 54 ~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd 112 (269)
|+++.+||++...+.|..+|. .++++...+..| ..|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~vg--------------~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPVG--------------GYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEECC--------------CCCceEEeC
Confidence 357889999999999999985 355544433222 267777763
No 81
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.06 E-value=1.7 Score=36.22 Aligned_cols=111 Identities=12% Similarity=0.030 Sum_probs=64.7
Q ss_pred EEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEE
Q 024317 51 IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI 130 (269)
Q Consensus 51 av~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~ 130 (269)
++. .++.+|+++ ..+.|+.+|. .+|++....-... .+..+ ..+ .++.+||+... +++..+
T Consensus 32 ~~~-~~~~v~~~~-~~~~l~~~d~---~tG~~~W~~~~~~-----------~~~~~--~~~-~~~~v~v~~~~-~~l~~~ 91 (238)
T PF13360_consen 32 AVP-DGGRVYVAS-GDGNLYALDA---KTGKVLWRFDLPG-----------PISGA--PVV-DGGRVYVGTSD-GSLYAL 91 (238)
T ss_dssp EEE-ETTEEEEEE-TTSEEEEEET---TTSEEEEEEECSS-----------CGGSG--EEE-ETTEEEEEETT-SEEEEE
T ss_pred EEE-eCCEEEEEc-CCCEEEEEEC---CCCCEEEEeeccc-----------cccce--eee-cccccccccce-eeeEec
Confidence 552 589999995 6788999973 5787665432110 11111 233 57789998854 499999
Q ss_pred e-CCcceEEec-CCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 131 T-NLGVTTIAG-GGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 131 ~-~~g~~~~~g-~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
| .+|...+.. ..... ...+..+...++. ++.+|+... ++.|+.+++..+..
T Consensus 92 d~~tG~~~W~~~~~~~~---------~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSP---------PAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKL 144 (238)
T ss_dssp ETTTSCEEEEEEE-SSC---------TCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEE
T ss_pred ccCCcceeeeecccccc---------ccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcE
Confidence 9 778733321 11100 0113344455555 367888776 57789998665544
No 82
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=94.89 E-value=1.3 Score=39.28 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=80.4
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCC-cccCCCCCcccccCCCCceEEEc----CCCCEEEE
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVD----MKGNIYVA 120 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g-~~g~~dg~~~~~~~~~P~giavd----~~G~lyVa 120 (269)
+..+|..+ .+|++.|+-...+.|+++| ..+|++....|.. ...+.. ....|..-++..+- .++.|-|-
T Consensus 145 HiNsV~~~-~~G~yLiS~R~~~~i~~I~---~~tG~I~W~lgG~~~~df~~---~~~~f~~QHdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 145 HINSVDKD-DDGDYLISSRNTSTIYKID---PSTGKIIWRLGGKRNSDFTL---PATNFSWQHDARFLNESNDDGTISLF 217 (299)
T ss_pred Eeeeeeec-CCccEEEEecccCEEEEEE---CCCCcEEEEeCCCCCCcccc---cCCcEeeccCCEEeccCCCCCEEEEE
Confidence 45667774 5789999999999999997 4789988877653 222221 22334444444444 45555555
Q ss_pred eC----------CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCc--eEEEEeCCCCEEEEEECCCCeEEEEE
Q 024317 121 DK----------SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSND--FELTFVPHICALLISDHGNQLIRQIN 187 (269)
Q Consensus 121 D~----------~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P--~gia~~~~~g~LyVaD~~n~~I~~~~ 187 (269)
|- ...++..+|+..+ .++.-.... .. ..+..+ -..-.-|. |+++|.....+++..++
T Consensus 218 DN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~---~~------~~~~s~~~G~~Q~L~n-Gn~li~~g~~g~~~E~~ 287 (299)
T PF14269_consen 218 DNANSDFNGTEPSRGLVLELDPETMTVTLVREYSD---HP------DGFYSPSQGSAQRLPN-GNVLIGWGNNGRISEFT 287 (299)
T ss_pred cCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeec---CC------CcccccCCCcceECCC-CCEEEecCCCceEEEEC
Confidence 54 3457778887654 332221100 00 011111 12223343 89999999999999999
Q ss_pred CCCCeEEE
Q 024317 188 LKPEDCSK 195 (269)
Q Consensus 188 ~~~~~~~~ 195 (269)
.+|+.+..
T Consensus 288 ~~G~vv~~ 295 (299)
T PF14269_consen 288 PDGEVVWE 295 (299)
T ss_pred CCCCEEEE
Confidence 99987654
No 83
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.76 E-value=0.73 Score=43.36 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEeC-Cc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC
Q 024317 104 DKPKSFAVDMKGNIYVADKSNHVIRKITN-LG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG 179 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~-~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~ 179 (269)
..-.++++.++|.+.++=....+|+.++. +. . .++.|. -...++++++++ ++++++-..
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH----------------~~~v~~~~f~p~-g~~i~Sgs~ 266 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH----------------STYVTSVAFSPD-GNLLVSGSD 266 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC----------------CCceEEEEecCC-CCEEEEecC
Confidence 34578999999998888888888888886 43 3 555554 234589999998 688888888
Q ss_pred CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccccc
Q 024317 180 NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDPPL 242 (269)
Q Consensus 180 n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~~~ 242 (269)
.+.|+.++............ .-....++++..+|+++++- +++.++-.+
T Consensus 267 D~tvriWd~~~~~~~~~l~~--------------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKG--------------HSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred CCcEEEEeccCCeEEEeeec--------------cCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 89999999887544432222 11345678888888666665 455555444
No 84
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=94.46 E-value=0.42 Score=42.49 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=44.4
Q ss_pred cccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317 100 SARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD 177 (269)
Q Consensus 100 ~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD 177 (269)
...|..|++--. .+|.|||+|.+.+++.++|++ |+ ..++..+ ..|.||++. +..++|.-
T Consensus 199 ~~GLsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G~~e~Va~vp----------------G~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 199 ASGLSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLP----------------GFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred EcCccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEEEECC----------------CCCccccee--CCEEEEEe
Confidence 345889998888 689999999999999999997 88 6665432 357788876 23555543
No 85
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=94.42 E-value=1.9 Score=40.09 Aligned_cols=133 Identities=11% Similarity=0.192 Sum_probs=82.0
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCC--------CCccEE--EEEcCCcc-----------cCCC--C-----C
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLS--------EESVVK--RLAGDGVQ-----------GYSD--G-----E 97 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~--------~~g~~~--~~~g~g~~-----------g~~d--g-----~ 97 (269)
-|..+-+.|++.++|++-..+.+|..+|.... .-|.+. ++...|.. -+.. + .
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh
Confidence 58888887766699999999999999985310 001100 11111110 0000 0 0
Q ss_pred cccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCc-----c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCC
Q 024317 98 PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-----V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHIC 171 (269)
Q Consensus 98 ~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g-----~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g 171 (269)
....+...|+ +++.|++..+.|....|+|..|...- . +.+-|.... .++-.+.++|+ |
T Consensus 381 ~~~~~hsmP~-~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va--------------Gys~~v~fSpD-G 444 (503)
T KOG0282|consen 381 ADPEMHTMPC-LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA--------------GYSCQVDFSPD-G 444 (503)
T ss_pred cchhhccCcc-eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc--------------CceeeEEEcCC-C
Confidence 1223445555 89999999999999999999887322 1 444443222 24567889998 5
Q ss_pred EEEEEECCCCeEEEEECCCCeEE
Q 024317 172 ALLISDHGNQLIRQINLKPEDCS 194 (269)
Q Consensus 172 ~LyVaD~~n~~I~~~~~~~~~~~ 194 (269)
..+++-.+.+++..++.....+.
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred CeEEeecCCccEEEeechhhhhh
Confidence 66666666788999987765443
No 86
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.27 E-value=0.26 Score=29.41 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=21.0
Q ss_pred CCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 168 PHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 168 ~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
|+++.|||++...+.|..++......
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 34578999999999999999865544
No 87
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=93.84 E-value=4.2 Score=35.53 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=78.3
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
-.++++. .+++..++-+-...++.+|+. .|+ ...+.|.. .--.+++++++..-.|+-+..+
T Consensus 66 v~dv~~s-~dg~~alS~swD~~lrlWDl~---~g~~t~~f~GH~--------------~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 66 VSDVVLS-SDGNFALSASWDGTLRLWDLA---TGESTRRFVGHT--------------KDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ecceEEc-cCCceEEeccccceEEEEEec---CCcEEEEEEecC--------------CceEEEEecCCCceeecCCCcc
Confidence 4567775 578888888777888888863 333 33444432 2346799999999999999999
Q ss_pred EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCe
Q 024317 126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPED 192 (269)
Q Consensus 126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~ 192 (269)
.|..++--|. .++..... =...+++.++|.+.+.++...+. ..|..+++++-.
T Consensus 128 Tiklwnt~g~ck~t~~~~~~--------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSH--------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred eeeeeeecccEEEEEecCCC--------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 9999998776 55444321 14568899999754666665554 457777776643
No 88
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.78 E-value=5.7 Score=36.95 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=41.0
Q ss_pred eEEEcCCCC-E-EEEeC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--
Q 024317 108 SFAVDMKGN-I-YVADK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-- 180 (269)
Q Consensus 108 giavd~~G~-l-yVaD~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-- 180 (269)
..+++++|. | |.+|. +...|++++.++. ..+.... ... ...+++|++..|+++....
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-------------~~~---~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-------------GRY---STPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-------------Ccc---cCeEECCCCCEEEEEEcCCCc
Confidence 467778887 4 44442 3457888887664 3333210 001 2345678867777665432
Q ss_pred CeEEEEECCCCeEEE
Q 024317 181 QLIRQINLKPEDCSK 195 (269)
Q Consensus 181 ~~I~~~~~~~~~~~~ 195 (269)
.+|..++.+++....
T Consensus 358 ~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 358 FSIGVMKPDGSGERI 372 (435)
T ss_pred eEEEEEECCCCceEe
Confidence 478888877654433
No 89
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=93.62 E-value=4.7 Score=35.46 Aligned_cols=117 Identities=9% Similarity=0.045 Sum_probs=79.0
Q ss_pred CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
..-.++.+.|.+++.||+-.-...-+.+|.. ...-+.+|.|.- .--+.|.+-|+|.-|++-..+
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R--~~~c~qtF~ghe--------------sDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR--SGQCVQTFEGHE--------------SDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeecc--CcceeEeecccc--------------cccceEEEccCCCeeeecCCC
Confidence 3556788877789999998777777777752 233355554431 134568888999999998888
Q ss_pred CEEEEEeC--Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317 125 HVIRKITN--LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED 192 (269)
Q Consensus 125 ~~I~~~~~--~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~ 192 (269)
...+.||- +-+ ..+... ......+.++++-. |+|+++-..+..+.+++.-...
T Consensus 251 ~tcRlyDlRaD~~~a~ys~~--------------~~~~gitSv~FS~S-GRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSHD--------------SIICGITSVAFSKS-GRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ceeEEEeecCCcEEeeeccC--------------cccCCceeEEEccc-ccEEEeeecCCceeEeeccccc
Confidence 88888883 333 333221 11234478999876 8998888878888888865443
No 90
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.61 E-value=5.7 Score=36.35 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=42.5
Q ss_pred eEEEcCCCC-EE-EEeC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--
Q 024317 108 SFAVDMKGN-IY-VADK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-- 180 (269)
Q Consensus 108 giavd~~G~-ly-VaD~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-- 180 (269)
..++.++|. |+ +++. +...|++++.++. ..+...+ ......++++++..|+++...+
T Consensus 282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~----------------~~~~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG----------------GYNASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC----------------CCccCeEECCCCCEEEEEEccCCc
Confidence 346667776 43 4443 3447888886554 3333211 1234567788866777776643
Q ss_pred CeEEEEECCCCeEEEe
Q 024317 181 QLIRQINLKPEDCSKS 196 (269)
Q Consensus 181 ~~I~~~~~~~~~~~~~ 196 (269)
.+|+.++.+++.....
T Consensus 346 ~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 346 FNIAVMDLDGGGERVL 361 (417)
T ss_pred eEEEEEeCCCCCeEEc
Confidence 3788888877554443
No 91
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=93.38 E-value=3.9 Score=33.74 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=61.7
Q ss_pred CceEEEcCCCC-EEEEe-CCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--C
Q 024317 106 PKSFAVDMKGN-IYVAD-KSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--N 180 (269)
Q Consensus 106 P~giavd~~G~-lyVaD-~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--n 180 (269)
-.+++..|+|+ +.|+- ....+|..++.++. ..-.+. ...+.|..+|++..|.++..+ +
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~-----------------~~~n~i~wsP~G~~l~~~g~~n~~ 124 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT-----------------QPRNTISWSPDGRFLVLAGFGNLN 124 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC-----------------CCceEEEECCCCCEEEEEEccCCC
Confidence 36788889888 44443 33558899998765 222221 123679999996677777654 4
Q ss_pred CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 181 QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 181 ~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
+.|..++.+.......... .....++.+++|+.+++-
T Consensus 125 G~l~~wd~~~~~~i~~~~~----------------~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 125 GDLEFWDVRKKKKISTFEH----------------SDATDVEWSPDGRYLATA 161 (194)
T ss_pred cEEEEEECCCCEEeecccc----------------CcEEEEEEcCCCCEEEEE
Confidence 5788898875544332221 235678999999877776
No 92
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.34 E-value=6.4 Score=36.07 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=72.2
Q ss_pred CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCC-c
Q 024317 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL-G 134 (269)
Q Consensus 56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~-g 134 (269)
++.+|+++. .+.++.+|. .+|+...... +..+..+++ .++.||+++. ++++..++.. |
T Consensus 256 ~~~vy~~~~-~g~l~ald~---~tG~~~W~~~---------------~~~~~~~~~-~~~~vy~~~~-~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDL---RSGQIVWKRE---------------YGSVNDFAV-DGGRIYLVDQ-NDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEEc-CCeEEEEEC---CCCCEEEeec---------------CCCccCcEE-ECCEEEEEcC-CCeEEEEECCCC
Confidence 688898875 467888874 4666544321 112333455 4678999885 6789999864 4
Q ss_pred ceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE-EecccCccCCCcccceeee
Q 024317 135 VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS-KSSQSGSALGAVSVWVLVS 213 (269)
Q Consensus 135 ~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~ 213 (269)
+..+.-..... ..+..| ++. ++.||+.+. ++.|+.++...+.+. ..... +. .
T Consensus 315 ~~~W~~~~~~~----------~~~~sp---~v~--~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~----~~-~------ 367 (394)
T PRK11138 315 VELWSQSDLLH----------RLLTAP---VLY--NGYLVVGDS-EGYLHWINREDGRFVAQQKVD----SS-G------ 367 (394)
T ss_pred cEEEcccccCC----------CcccCC---EEE--CCEEEEEeC-CCEEEEEECCCCCEEEEEEcC----CC-c------
Confidence 34332111000 112333 222 378999886 467888887554332 22111 00 0
Q ss_pred eccceeeEEEecCCcEEEEcCCCCcc
Q 024317 214 VLSCLVSLVIGFVARPYIIRHTGRLD 239 (269)
Q Consensus 214 ~l~~p~gia~d~~g~lyVad~~g~~~ 239 (269)
..+.|. +. +++|||.+.+|.+.
T Consensus 368 ~~s~P~---~~-~~~l~v~t~~G~l~ 389 (394)
T PRK11138 368 FLSEPV---VA-DDKLLIQARDGTVY 389 (394)
T ss_pred ceeCCE---EE-CCEEEEEeCCceEE
Confidence 112222 22 57899998887654
No 93
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=93.12 E-value=0.079 Score=31.73 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=17.2
Q ss_pred CCCceEEEcCCCCEEEEeCC
Q 024317 104 DKPKSFAVDMKGNIYVADKS 123 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~ 123 (269)
..|.+|++|++|++||+=.-
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 37899999999999998653
No 94
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.09 E-value=7.8 Score=36.38 Aligned_cols=73 Identities=11% Similarity=0.199 Sum_probs=42.5
Q ss_pred ceEEEcCCCC-EEE-EeC-CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 107 KSFAVDMKGN-IYV-ADK-SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 107 ~giavd~~G~-lyV-aD~-~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
...+++++|. |++ ++. ++..|++++.+ |. ..+...+ ......+++|++..||++...++
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g----------------~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG----------------EQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC----------------CCCcCeeECCCCCEEEEEEecCC
Confidence 4467778887 444 443 34578888865 33 4432111 01123467888778877765433
Q ss_pred --eEEEEECCCCeEEE
Q 024317 182 --LIRQINLKPEDCSK 195 (269)
Q Consensus 182 --~I~~~~~~~~~~~~ 195 (269)
+|++++.+++....
T Consensus 373 ~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 373 KFNIARQDLETGAMQV 388 (448)
T ss_pred ceEEEEEECCCCCeEE
Confidence 67888887765443
No 95
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.04 E-value=3.8 Score=40.21 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC
Q 024317 103 FDKPKSFAVDMKGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG 179 (269)
Q Consensus 103 ~~~P~giavd~~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~ 179 (269)
++--..+.++|+.++..+-...+.||.+| ..|. ..+.|.. .....|+++|+ |.-+++-..
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~----------------~~V~al~~Sp~-Gr~LaSg~e 597 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK----------------GPVTALAFSPC-GRYLASGDE 597 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC----------------CceEEEEEcCC-CceEeeccc
Confidence 44455699999999888777788899888 4555 5554431 23468999997 655555556
Q ss_pred CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc---CCCCccccc
Q 024317 180 NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR---HTGRLDPPL 242 (269)
Q Consensus 180 n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad---~~g~~~~~~ 242 (269)
.+.|..|+...+.....-..+ . .....|.+..+|++.++. ++.++|...
T Consensus 598 d~~I~iWDl~~~~~v~~l~~H--t------------~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGH--T------------GTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcc--c------------CceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 788999998775443322221 1 224567788899999988 455666443
No 96
>PTZ00421 coronin; Provisional
Probab=92.98 E-value=8.7 Score=36.65 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=72.9
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-------EEEEEcCCcccCCCCCcccccCCCCceEEEcCCC-CEE
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-------VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIY 118 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-------~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G-~ly 118 (269)
-.+++++|.+++++++-+..+.|..||+. ..+. +..+.| .-.....+++++++ +++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~--~~~~~~~~~~~l~~L~g--------------H~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIP--EEGLTQNISDPIVHLQG--------------HTKKVGIVSFHPSAMNVL 141 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecC--CCccccccCcceEEecC--------------CCCcEEEEEeCcCCCCEE
Confidence 36788876567777777778888888763 2211 112211 11234568888865 577
Q ss_pred EEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317 119 VADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS 194 (269)
Q Consensus 119 VaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~ 194 (269)
++=...+.|+.+|.. +. ..+.+. -....+|+++++ +.++++-..++.|+.++.+.....
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h----------------~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCH----------------SDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCC----------------CCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEE
Confidence 766667889999854 33 222221 123468999987 777777777889999998765443
No 97
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=92.80 E-value=0.11 Score=31.01 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=17.3
Q ss_pred cceeeEEEecCCcEEEEcCC
Q 024317 216 SCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 216 ~~p~gia~d~~g~lyVad~~ 235 (269)
..+.+|++|++|++||+=.+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 46899999999999999744
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.78 E-value=5.5 Score=39.30 Aligned_cols=120 Identities=18% Similarity=0.082 Sum_probs=80.8
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
+-+.|++.|.+++.|++-+-.++|+.|++ ++-++.... |- =..-+.+++.|+|...|.=+.++
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI---~d~~Vv~W~--------Dl------~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSI---SDKKVVDWN--------DL------RDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeec---CcCeeEeeh--------hh------hhhheeEEeccCCceEEEEEecc
Confidence 45889999999999999998899988864 344444332 10 02446799999999888888899
Q ss_pred EEEEEeCCcce-----EEecCCCCCCCCCCCccccccccCceEEEEeCCCC-EEEEEECCCCeEEEEECCCCeE
Q 024317 126 VIRKITNLGVT-----TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHIC-ALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 126 ~I~~~~~~g~~-----~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g-~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
..+.++..|.. .+.-.... ..+-...+|+-+.|..- .|+|+-. ..|||.|+.+...+
T Consensus 474 ~C~fY~t~~lk~~~~~~I~~~~~K----------k~~~~rITG~Q~~p~~~~~vLVTSn-DSrIRI~d~~~~~l 536 (712)
T KOG0283|consen 474 YCRFYDTEGLKLVSDFHIRLHNKK----------KKQGKRITGLQFFPGDPDEVLVTSN-DSRIRIYDGRDKDL 536 (712)
T ss_pred EEEEEEccCCeEEEeeeEeeccCc----------cccCceeeeeEecCCCCCeEEEecC-CCceEEEeccchhh
Confidence 99999877751 12111111 11122467887776422 4888776 46899999866543
No 99
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=92.76 E-value=4.3 Score=38.38 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=50.6
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL 182 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~ 182 (269)
.|.++|+.+++.....--...+|+++.-.|- ...+-.. ..-..++.|+++|+...|-++|. ++.
T Consensus 445 ~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-------------~h~a~iT~vaySpd~~yla~~Da-~rk 510 (603)
T KOG0318|consen 445 ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-------------EHRAAITDVAYSPDGAYLAAGDA-SRK 510 (603)
T ss_pred ccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee-------------cccCCceEEEECCCCcEEEEecc-CCc
Confidence 6788999999987666666667777775552 1111100 01234789999999777777776 577
Q ss_pred EEEEECCCCeE
Q 024317 183 IRQINLKPEDC 193 (269)
Q Consensus 183 I~~~~~~~~~~ 193 (269)
+..++......
T Consensus 511 vv~yd~~s~~~ 521 (603)
T KOG0318|consen 511 VVLYDVASREV 521 (603)
T ss_pred EEEEEcccCce
Confidence 88888776655
No 100
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=92.75 E-value=4.6 Score=37.13 Aligned_cols=140 Identities=14% Similarity=0.036 Sum_probs=91.5
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
.-++|++. .+|.+..+-....-=+.+|+ .+|+ +..+.| ....-.+|+++|+|....+-...
T Consensus 305 ~v~~iaf~-~DGSL~~tGGlD~~~RvWDl---Rtgr~im~L~g--------------H~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 305 GVFSIAFQ-PDGSLAATGGLDSLGRVWDL---RTGRCIMFLAG--------------HIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred ccceeEec-CCCceeeccCccchhheeec---ccCcEEEEecc--------------cccceeeEeECCCceEEeecCCC
Confidence 45778886 47888777654443445554 3555 333433 23455789999999988888888
Q ss_pred CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317 125 HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS 201 (269)
Q Consensus 125 ~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~ 201 (269)
+.+++.|-.++ .++.+. -+-.+.+.++|+.|..+++-...+.+..++..+-.....-..
T Consensus 367 nt~kVWDLR~r~~ly~ipAH----------------~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-- 428 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAH----------------SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-- 428 (459)
T ss_pred CcEEEeeecccccceecccc----------------cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC--
Confidence 88888887665 444332 344678999997789999999999999998766433221111
Q ss_pred cCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
.=....++.+.++|...++.
T Consensus 429 ------------He~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 429 ------------HEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ------------CccceEEEEeccCCceEEEe
Confidence 01234456667777655554
No 101
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.73 E-value=8.4 Score=35.84 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=37.9
Q ss_pred eEEEcCCCC-EEEE-eC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEE-EECC-C
Q 024317 108 SFAVDMKGN-IYVA-DK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI-SDHG-N 180 (269)
Q Consensus 108 giavd~~G~-lyVa-D~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyV-aD~~-n 180 (269)
..+++++|. |+++ +. ++..|++++.++. ..+.... ......++++++..|++ +|.. .
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~----------------~~~~~~~~spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF----------------GIDTEPTWAPDGKSIYFTSDRGGR 315 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCC----------------CCccceEECCCCCEEEEEECCCCC
Confidence 467778887 5443 32 3457888886543 3332210 11124567777555654 4432 3
Q ss_pred CeEEEEECCCCeE
Q 024317 181 QLIRQINLKPEDC 193 (269)
Q Consensus 181 ~~I~~~~~~~~~~ 193 (269)
..|+.++.+++..
T Consensus 316 ~~iy~~dl~~g~~ 328 (433)
T PRK04922 316 PQIYRVAASGGSA 328 (433)
T ss_pred ceEEEEECCCCCe
Confidence 3578777765443
No 102
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.31 E-value=5.8 Score=32.97 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=41.6
Q ss_pred EEcCCCCEEEEeCCCCEEEEEeC-CcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEE-
Q 024317 110 AVDMKGNIYVADKSNHVIRKITN-LGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN- 187 (269)
Q Consensus 110 avd~~G~lyVaD~~n~~I~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~- 187 (269)
++..++.+|+++ ..+.+..+|. +|+..+--... ..+..+ ..+. ++.+||.... ++|+.++
T Consensus 32 ~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~------------~~~~~~--~~~~--~~~v~v~~~~-~~l~~~d~ 93 (238)
T PF13360_consen 32 AVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDLP------------GPISGA--PVVD--GGRVYVGTSD-GSLYALDA 93 (238)
T ss_dssp EEEETTEEEEEE-TTSEEEEEETTTSEEEEEEECS------------SCGGSG--EEEE--TTEEEEEETT-SEEEEEET
T ss_pred EEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeecc------------ccccce--eeec--ccccccccce-eeeEeccc
Confidence 554688899996 5789999996 77622221110 012222 2333 2789988854 4899999
Q ss_pred CCCCeEEE
Q 024317 188 LKPEDCSK 195 (269)
Q Consensus 188 ~~~~~~~~ 195 (269)
.+|+..-.
T Consensus 94 ~tG~~~W~ 101 (238)
T PF13360_consen 94 KTGKVLWS 101 (238)
T ss_dssp TTSCEEEE
T ss_pred CCcceeee
Confidence 55555544
No 103
>PRK01742 tolB translocation protein TolB; Provisional
Probab=92.21 E-value=9.8 Score=35.38 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=38.6
Q ss_pred ceEEEcCCCC-EEE-EeC-CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317 107 KSFAVDMKGN-IYV-ADK-SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL 182 (269)
Q Consensus 107 ~giavd~~G~-lyV-aD~-~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~ 182 (269)
...+++++|. |++ +|. ++-+|+.++.++. ....+.. . ...+++|++..|+++.. ..
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-------------~-----~~~~~SpDG~~ia~~~~--~~ 354 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-------------G-----YSAQISADGKTLVMING--DN 354 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-------------C-----CCccCCCCCCEEEEEcC--CC
Confidence 4577888887 444 442 4557777776655 3332210 0 12456777666766654 45
Q ss_pred EEEEECCCCeE
Q 024317 183 IRQINLKPEDC 193 (269)
Q Consensus 183 I~~~~~~~~~~ 193 (269)
+.+++..++..
T Consensus 355 i~~~Dl~~g~~ 365 (429)
T PRK01742 355 VVKQDLTSGST 365 (429)
T ss_pred EEEEECCCCCe
Confidence 77788766543
No 104
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.00 E-value=11 Score=35.42 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=57.9
Q ss_pred eEEEecCCCeEEEE-eC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE-eC-C
Q 024317 49 SVIDRPGSSDLIVL-DS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA-DK-S 123 (269)
Q Consensus 49 giav~~~~g~lyV~-D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa-D~-~ 123 (269)
..+++|++..|+++ +. +..+|+.+|+ ..|+...+.... + .-...+++++|+ |+++ +. +
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl---~tg~~~~lt~~~------g--------~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDI---YTQVREKVTSFP------G--------INGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEEC---CCCCeEEecCCC------C--------CcCCeeECCCCCEEEEEEeCCC
Confidence 45677665666544 32 3457888875 234443332110 0 112457788887 6554 32 3
Q ss_pred CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-EC-CCCeEEEEECCCCeE
Q 024317 124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DH-GNQLIRQINLKPEDC 193 (269)
Q Consensus 124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~-~n~~I~~~~~~~~~~ 193 (269)
+..|++++.++. ..+.... ......+++|++..|+++ +. ++..|++++.+++..
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~----------------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHR----------------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CeEEEEEECCCCCeEECccCC----------------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 446888886554 3332210 112334567775566544 32 334678788765543
No 105
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=91.92 E-value=12 Score=35.62 Aligned_cols=109 Identities=9% Similarity=0.017 Sum_probs=63.0
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 104 DKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
..|.++++.++|.+.|.-...+-+..-+..+...+- . -..|.++|++|+ +...+.-...+.|
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~-~----------------~y~~s~vAv~~~-~~~vaVGG~Dgkv 467 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP-I----------------GYESSAVAVSPD-GSEVAVGGQDGKV 467 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec-c----------------ccccceEEEcCC-CCEEEEecccceE
Confidence 479999999988644443333333333333322221 1 246789999998 5555444556779
Q ss_pred EEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEE-cCCCCccccc
Q 024317 184 RQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRLDPPL 242 (269)
Q Consensus 184 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~~~~~ 242 (269)
+.+++.|..+...+..- . ....+.-|+..++|..+.+ |..+.+..++
T Consensus 468 hvysl~g~~l~ee~~~~--~----------h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 468 HVYSLSGDELKEEAKLL--E----------HRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred EEEEecCCcccceeeee--c----------ccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 99999887654332210 0 1234677888888854444 4444444444
No 106
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=91.91 E-value=7.9 Score=33.64 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=85.9
Q ss_pred CcEEEEEecCc----cCCCCcceEEEe--cCCCeEEE--EeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCccccc
Q 024317 31 GYTVTTVIDGH----QLEINPHSVIDR--PGSSDLIV--LDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSAR 102 (269)
Q Consensus 31 g~~~~~~~~g~----~~~~~P~giav~--~~~g~lyV--~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~ 102 (269)
-+.++.+.++. ...+.|+|++.. +..|..|| ++.. +.|..+.+.-..+|++.... ..+
T Consensus 135 ~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~~k~-------------vR~ 200 (364)
T COG4247 135 PQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVGTKL-------------VRQ 200 (364)
T ss_pred ccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEccee-------------eEe
Confidence 33444444442 245678888864 22344444 4332 55655554323344433321 123
Q ss_pred CCCC---ceEEEcC-CCCEEEEeCCCCEEEEEeCC---cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCC-CCEE
Q 024317 103 FDKP---KSFAVDM-KGNIYVADKSNHVIRKITNL---GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH-ICAL 173 (269)
Q Consensus 103 ~~~P---~giavd~-~G~lyVaD~~n~~I~~~~~~---g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~-~g~L 173 (269)
|..| .|+..|. .|.||++.- +-.|++++.+ |. ..+..+-... ......+.. -.|-+-|. .|.|
T Consensus 201 fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep~~G~~g~~idr~~d~------~~LtdDvEG-ltiYy~pnGkGYL 272 (364)
T COG4247 201 FKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAEPNRGNTGRLIDRIKDL------SYLTDDVEG-LTIYYGPNGKGYL 272 (364)
T ss_pred eecCCcccceeeccccceEEEeec-cceeeecccCCCCCCccchhhhhcCc------hhhcccccc-cEEEEcCCCcEEE
Confidence 4444 5777764 788999985 5689999843 21 1111111000 000000000 12222332 2567
Q ss_pred EEEECCCCeEEEEECCCC--eEEEecccC--ccCC-----CcccceeeeeccceeeEEEecCCc
Q 024317 174 LISDHGNQLIRQINLKPE--DCSKSSQSG--SALG-----AVSVWVLVSVLSCLVSLVIGFVAR 228 (269)
Q Consensus 174 yVaD~~n~~I~~~~~~~~--~~~~~~~~g--~~~g-----~~~~~~~~~~l~~p~gia~d~~g~ 228 (269)
..+..+|+.--.+..+|. .+..|+... ...| +......++....|.|+.+..+|+
T Consensus 273 ~aSSQGnNtya~y~ReG~N~YVgsF~vt~n~~iDg~setDG~DV~~~~LGa~~p~G~FVaQDG~ 336 (364)
T COG4247 273 LASSQGNNTYAAYTREGNNDYVGSFGVTNNGAIDGVSETDGADVVNVPLGANFPFGLFVAQDGD 336 (364)
T ss_pred EEecCCCceEEEEEeeCCCceEEEEeeccCCccccccccCCcceeccccCCCCcceeEEeccCC
Confidence 777777887777777764 333333210 0111 111112334457799999999985
No 107
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=91.23 E-value=11 Score=34.13 Aligned_cols=118 Identities=12% Similarity=0.113 Sum_probs=81.9
Q ss_pred cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317 42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD 121 (269)
Q Consensus 42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD 121 (269)
+.+.+-..|+++| .+..|++.+....|..+|+ .+|+++.... .....-.++++.+.--..|+-
T Consensus 149 gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDl---atg~Lkltlt-------------Ghi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 149 GHLGWVRSVAVDP-GNEWFATGSADRTIKIWDL---ATGQLKLTLT-------------GHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hccceEEEEeeCC-CceeEEecCCCceeEEEEc---ccCeEEEeec-------------chhheeeeeeecccCceEEEe
Confidence 3566788999965 5777777777788888886 4677655431 123355789996655566666
Q ss_pred CCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 122 KSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 122 ~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
.....|..+|-.-. ..+-|. |....+|++-|. -.++++-.....+++++.+....
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGH----------------lS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGH----------------LSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccc----------------cceeEEEecccc-ceeEEecCCcceEEEeeecccce
Confidence 66778888885433 444443 667788999887 57788877777888888776543
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=91.14 E-value=4.3 Score=38.40 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=84.0
Q ss_pred CCcEEEEEecCcc----------CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcc
Q 024317 30 DGYTVTTVIDGHQ----------LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPG 99 (269)
Q Consensus 30 ~g~~~~~~~~g~~----------~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~ 99 (269)
+|+.+-.+..|.. ....-+..++.|.+.+.|++-+..+.+..|+.. ....+..++...+..+
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~-~~k~q~qVik~k~~~g------- 315 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN-NTKSQLQVIKTKPAGG------- 315 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC-CchhheeEEeeccCCC-------
Confidence 6777666655432 222233445667777888887766666666542 2333344443222111
Q ss_pred cccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc----eEEecCCCCCCCCCCCccccccc--cCceEEEEeCCCCEE
Q 024317 100 SARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV----TTIAGGGSKKEGRADGPAQNASF--SNDFELTFVPHICAL 173 (269)
Q Consensus 100 ~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~----~~~~g~~~~~~~~~~~~~~~~~l--~~P~gia~~~~~g~L 173 (269)
.=-.|..-+++++|.++-+-..++.|+.++..+. ...... +.. ...++|+++++ |+.
T Consensus 316 --~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~--------------AH~~g~~Itsi~FS~d-g~~ 378 (641)
T KOG0772|consen 316 --KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD--------------AHLPGQDITSISFSYD-GNY 378 (641)
T ss_pred --cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee--------------ccCCCCceeEEEeccc-cch
Confidence 1124566788889999887788889998885332 111111 112 14578999998 888
Q ss_pred EEEECCCCeEEEEECCCC
Q 024317 174 LISDHGNQLIRQINLKPE 191 (269)
Q Consensus 174 yVaD~~n~~I~~~~~~~~ 191 (269)
+.+-...+.+..|+++.-
T Consensus 379 LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred hhhccCCCceeeeecccc
Confidence 888888888999988764
No 109
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.94 E-value=13 Score=34.47 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=57.7
Q ss_pred eEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE-e-CC
Q 024317 49 SVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA-D-KS 123 (269)
Q Consensus 49 giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa-D-~~ 123 (269)
..+++|++..|+++.. ++..|+.+|+ ..|+...+.... ..-...++.++|. |+++ + .+
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl---~~g~~~~l~~~~--------------g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDL---ATGRRRVVANFK--------------GSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEEC---CCCCEEEeecCC--------------CCccceEECCCCCEEEEEEccCC
Confidence 4567665556655432 3456888875 345444432110 0113467878886 5443 3 34
Q ss_pred CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEE-EEEC-CCCeEEEEECCCCe
Q 024317 124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALL-ISDH-GNQLIRQINLKPED 192 (269)
Q Consensus 124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~Ly-VaD~-~n~~I~~~~~~~~~ 192 (269)
+.+|+.++.++. ..+.... ......+++|++..|+ ++|. ++..|+.++.+++.
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~----------------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSS----------------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CceEEEEECCCCCcEECCCCC----------------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 567888886554 3332110 0112345677755565 4443 34467777766544
No 110
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.66 E-value=13 Score=33.69 Aligned_cols=116 Identities=14% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCeEEEEeC----CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCC------
Q 024317 56 SSDLIVLDS----SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN------ 124 (269)
Q Consensus 56 ~g~lyV~D~----~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n------ 124 (269)
..++||.|. ...|++.+| ..++++.-.+..| + .|+ ++++++|. +|++++.-
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD---~d~~k~lGmi~~g-------------~-~~~-~~~spdgk~~y~a~T~~sR~~rG 63 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVID---ADSGKLLGMIDTG-------------F-LGN-VALSPDGKTIYVAETFYSRGTRG 63 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEE---TTTTEEEEEEEEE-------------S-SEE-EEE-TTSSEEEEEEEEEEETTEE
T ss_pred CcEEEEECCccccccceEEEEE---CCCCcEEEEeecc-------------c-CCc-eeECCCCCEEEEEEEEEeccccc
Confidence 457888886 346888887 4566665544222 2 222 77888887 99998742
Q ss_pred ---CEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEE
Q 024317 125 ---HVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSK 195 (269)
Q Consensus 125 ---~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~ 195 (269)
..|..+|.........-. .+.... ...+..++-++++.++..+||.+.. ...|-+++...+.+..
T Consensus 64 ~RtDvv~~~D~~TL~~~~EI~-----iP~k~R-~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 64 ERTDVVEIWDTQTLSPTGEIE-----IPPKPR-AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-----ETTS-B---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred cceeEEEEEecCcCcccceEe-----cCCcch-heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee
Confidence 235667765431111000 000000 1235678889999988899999874 4569999988876544
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.65 E-value=14 Score=35.94 Aligned_cols=163 Identities=17% Similarity=0.114 Sum_probs=97.4
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCc-ccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~-~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
+-..||+-..+..+.++-.-.++|+.+|+. .|....+....+ +...-+ ...-..-..+|....|.++|+-..+
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin---~~~~~l~~s~n~~t~~sl~---sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDIN---TGTATLVASFNNVTVNSLG---SGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEcc---CcchhhhhhccccccccCC---CCCccceeeeecCCcceEEEecCcc
Confidence 455677633567788888888999999863 221111110000 000000 0112233568888888899998888
Q ss_pred CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317 125 HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS 201 (269)
Q Consensus 125 ~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~ 201 (269)
+.++.+|+... ..+-|. -.....|.++++ |+-.++-...+.|+.+++...........
T Consensus 193 k~lr~wDprt~~kimkLrGH----------------TdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~v-- 253 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGH----------------TDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIV-- 253 (735)
T ss_pred cceEEeccccccceeeeecc----------------ccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeEEe--
Confidence 99999997654 333332 234567888887 66666777788999999988765443222
Q ss_pred cCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317 202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
.....|.....-+.-.=.+-|.+|+||.+|-.
T Consensus 254 --H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 254 --HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred --ccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 12225654323233345667888899999843
No 112
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=90.44 E-value=1.8 Score=40.27 Aligned_cols=135 Identities=11% Similarity=0.170 Sum_probs=88.0
Q ss_pred EecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCCCCEEEE
Q 024317 52 DRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKSNHVIRK 129 (269)
Q Consensus 52 v~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~n~~I~~ 129 (269)
+-|..++|+.+-...++|+.++. -.++. +.++.|. +.| .++++..+|.=|.+-.....|..
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~v--y~~~~~lrtf~gH---------------~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNV--YDDRRCLRTFKGH---------------RKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hccceeeEEEecCCCceEEEEEE--ecCcceehhhhcc---------------hhhhhhhhccccCCeeeeeecceeeee
Confidence 33567888888888888988876 23444 4445433 122 45777778887777777777777
Q ss_pred EeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcc
Q 024317 130 ITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVS 207 (269)
Q Consensus 130 ~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~ 207 (269)
+|. .|+ ..-.-. =..|.++-+.|++.+++++-..+.+|+.++.+.+.++.....
T Consensus 285 wDtETG~~~~~f~~----------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-------- 340 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL----------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-------- 340 (503)
T ss_pred eccccceEEEEEec----------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh--------
Confidence 773 455 221111 135788999998669999999999999999887665443322
Q ss_pred cceeeeeccceeeEEEecCCcEEEEc
Q 024317 208 VWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 208 ~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
.|.....|.+=++|+-+|+.
T Consensus 341 ------hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 341 ------HLGAILDITFVDEGRRFISS 360 (503)
T ss_pred ------hhhheeeeEEccCCceEeee
Confidence 23344445555566666655
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.39 E-value=15 Score=34.18 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=41.5
Q ss_pred eEEEcCCCC-EEEE-e-CCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEE-EEEECC-C
Q 024317 108 SFAVDMKGN-IYVA-D-KSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICAL-LISDHG-N 180 (269)
Q Consensus 108 giavd~~G~-lyVa-D-~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~L-yVaD~~-n 180 (269)
..+++++|. |+++ + .++..|+.++.++. ..+.... ......+++|++..| |++|.. .
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~----------------~~~~~~~wSPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR----------------SNNTEPTWFPDSQNLAYTSDQAGR 310 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC----------------CCcCceEECCCCCEEEEEeCCCCC
Confidence 468888887 6655 3 33457888886543 3332211 112345678875556 455543 3
Q ss_pred CeEEEEECCCCeEEE
Q 024317 181 QLIRQINLKPEDCSK 195 (269)
Q Consensus 181 ~~I~~~~~~~~~~~~ 195 (269)
.+|++++.+++....
T Consensus 311 ~~Iy~~d~~~g~~~~ 325 (429)
T PRK03629 311 PQVYKVNINGGAPQR 325 (429)
T ss_pred ceEEEEECCCCCeEE
Confidence 478888877654433
No 114
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.26 E-value=6 Score=36.44 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=65.5
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 104 DKPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
..+...+.-++|.=+|+-.....|...+.||. ..+-|.. -...++|++.+|+..++..+. ..
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr---------------~~~v~dlait~Dgk~vl~v~~-d~ 376 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR---------------DPKVHDLAITYDGKYVLLVTV-DK 376 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc---------------cceeEEEEEcCCCcEEEEEec-cc
Confidence 35666777789998898887788888898887 4444422 233579999999778877775 46
Q ss_pred eEEEEECCCCeEE-EecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 182 LIRQINLKPEDCS-KSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 182 ~I~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
+|+.++.+..... ..... +....+++..+|.+.+.+
T Consensus 377 ~i~l~~~e~~~dr~lise~----------------~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLISEE----------------QPITSFSISKDGKLALVN 413 (519)
T ss_pred ceeeechhhhhhhcccccc----------------CceeEEEEcCCCcEEEEE
Confidence 7888877654332 11111 234566777777766665
No 115
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.25 E-value=14 Score=33.88 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=41.7
Q ss_pred EEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCc-ccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEE
Q 024317 51 IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRK 129 (269)
Q Consensus 51 av~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~-~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~ 129 (269)
++ .++.+|+.+. ++.++.+|. .+|++........ .++.... ....+ -.++++ .++.+||.+. ++.+..
T Consensus 66 vv--~~~~vy~~~~-~g~l~ald~---~tG~~~W~~~~~~~~~~~~~~-~~~~~--~~~~~v-~~~~v~v~~~-~g~l~a 134 (394)
T PRK11138 66 AV--AYNKVYAADR-AGLVKALDA---DTGKEIWSVDLSEKDGWFSKN-KSALL--SGGVTV-AGGKVYIGSE-KGQVYA 134 (394)
T ss_pred EE--ECCEEEEECC-CCeEEEEEC---CCCcEeeEEcCCCcccccccc-ccccc--ccccEE-ECCEEEEEcC-CCEEEE
Confidence 55 4789999885 467888874 5777665432211 0000000 00000 123555 4678999875 568999
Q ss_pred EeC-Ccc
Q 024317 130 ITN-LGV 135 (269)
Q Consensus 130 ~~~-~g~ 135 (269)
+|. +|+
T Consensus 135 ld~~tG~ 141 (394)
T PRK11138 135 LNAEDGE 141 (394)
T ss_pred EECCCCC
Confidence 995 565
No 116
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.16 E-value=12 Score=36.75 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=64.1
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCCCCE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKSNHV 126 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~n~~ 126 (269)
++..+.| +.++.++-+....|+.|.+. ..--+..+.|. ..| .++.+.|.|..|++=.....
T Consensus 455 yg~sFsP-d~rfLlScSED~svRLWsl~--t~s~~V~y~GH---------------~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 455 YGCSFSP-DRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGH---------------LAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eeeeecc-cccceeeccCCcceeeeecc--cceeEEEecCC---------------CcceeeEEecCCceEEEecCCCce
Confidence 7788875 67777887776667666542 22223333322 234 34667667655554443333
Q ss_pred EEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317 127 IRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS 196 (269)
Q Consensus 127 I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~ 196 (269)
-+.+..+.. ..++|. +.--.++.+.|. .+...+-...+.||.++...+..++.
T Consensus 517 ArLWs~d~~~PlRifagh----------------lsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGH----------------LSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred eeeeecccCCchhhhccc----------------ccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEE
Confidence 333333332 445543 455567888885 44445555667788888766554443
No 117
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.11 E-value=16 Score=33.99 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=43.1
Q ss_pred ceEEEcCCCC-EE-EEeC-CCCEEEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-
Q 024317 107 KSFAVDMKGN-IY-VADK-SNHVIRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN- 180 (269)
Q Consensus 107 ~giavd~~G~-ly-VaD~-~n~~I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n- 180 (269)
...+++++|. |+ .+|. +...|+.++.++ . ..+...+ ......+++|++..|+++...+
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g----------------~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG----------------NYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC----------------CCccCEEECCCCCEEEEEECCCC
Confidence 3467888887 44 4443 344688887543 3 3333211 1123467888877787765433
Q ss_pred -CeEEEEECCCCeEEEe
Q 024317 181 -QLIRQINLKPEDCSKS 196 (269)
Q Consensus 181 -~~I~~~~~~~~~~~~~ 196 (269)
..|+.++..++.....
T Consensus 359 ~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTL 375 (433)
T ss_pred ceeEEEEECCCCCeEEC
Confidence 3688888876654433
No 118
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=89.96 E-value=3.9 Score=34.79 Aligned_cols=162 Identities=16% Similarity=0.131 Sum_probs=73.0
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc----cEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES----VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD 121 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g----~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD 121 (269)
+=.-|+..| ++.||+.. ++.+++.... +..+ .....++.+. =..| ..|++|+.|.||..+
T Consensus 35 ~~~~i~~~P-~g~lY~I~--~~~lY~~~~~-~~~~~~~~~~~~~Ig~g~---------W~~F---~~i~~d~~G~LYaV~ 98 (229)
T PF14517_consen 35 NFRDIAAGP-NGRLYAIR--NDGLYRGSPS-SSGGNTWDSGSKQIGDGG---------WNSF---KFIFFDPTGVLYAVT 98 (229)
T ss_dssp T-SEEEE-T-TS-EEEEE--TTEEEEES----STT--HHHH-EEEE-S----------GGG----SEEEE-TTS-EEEEE
T ss_pred ccceEEEcC-CceEEEEE--CCceEEecCC-ccCcccccccCcccccCc---------ccce---eEEEecCCccEEEec
Confidence 444566655 78888888 3466665210 0111 1112222220 0123 379999999999888
Q ss_pred CCCCEEEEEeCCcc--eEEec-CCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE-ECCCCeEEEec
Q 024317 122 KSNHVIRKITNLGV--TTIAG-GGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI-NLKPEDCSKSS 197 (269)
Q Consensus 122 ~~n~~I~~~~~~g~--~~~~g-~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~-~~~~~~~~~~~ 197 (269)
. +..+.+..+... ..+.+ .+... + ....+...-|-.+++ |.||+.+.. +++++. .+.+..-.=..
T Consensus 99 ~-~G~lyR~~~~~~~~~~W~~~~~~~i-G-------~~GW~~f~~vfa~~~-GvLY~i~~d-g~~~~~~~p~~~~~~W~~ 167 (229)
T PF14517_consen 99 P-DGKLYRHPRPTNGSDNWIGGSGKKI-G-------GTGWNDFDAVFAGPN-GVLYAITPD-GRLYRRYRPDGGSDRWLS 167 (229)
T ss_dssp T-T-EEEEES---STT--HHH-HSEEE-E--------SSGGGEEEEEE-TT-S-EEEEETT-E-EEEE---SSTT--HHH
T ss_pred c-ccceeeccCCCccCcchhhccceec-c-------cCCCccceEEEeCCC-ccEEEEcCC-CceEEeCCCCCCCCcccc
Confidence 6 567766653211 22221 00000 0 011444567777876 999999965 477776 33322110000
Q ss_pred ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317 198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL 242 (269)
Q Consensus 198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~ 242 (269)
.. .. ..+.....+.-|...++|+||.++.+|.+....
T Consensus 168 ~s--~~------v~~~gw~~~~~i~~~~~g~L~~V~~~G~lyr~~ 204 (229)
T PF14517_consen 168 GS--GL------VGGGGWDSFHFIFFSPDGNLWAVKSNGKLYRGR 204 (229)
T ss_dssp H---EE------EESSSGGGEEEEEE-TTS-EEEE-ETTEEEEES
T ss_pred cc--ce------eccCCcccceEEeeCCCCcEEEEecCCEEeccC
Confidence 00 00 001122447889999999999999888886443
No 119
>PRK02889 tolB translocation protein TolB; Provisional
Probab=89.91 E-value=17 Score=33.87 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=39.6
Q ss_pred eEEEcCCCC-EE-EEeC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--
Q 024317 108 SFAVDMKGN-IY-VADK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-- 180 (269)
Q Consensus 108 giavd~~G~-ly-VaD~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-- 180 (269)
..+++++|. |+ ++|. ++..|++++.++. ..+...+. .+ ...+++|++..|+++...+
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~--------------~~--~~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS--------------YN--TSPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC--------------Cc--CceEECCCCCEEEEEEccCCc
Confidence 456888887 44 4443 3456777775543 33332110 11 1346788766666554433
Q ss_pred CeEEEEECCCCeEEE
Q 024317 181 QLIRQINLKPEDCSK 195 (269)
Q Consensus 181 ~~I~~~~~~~~~~~~ 195 (269)
..|..++..++....
T Consensus 352 ~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 352 FKLYVQDLATGQVTA 366 (427)
T ss_pred EEEEEEECCCCCeEE
Confidence 368888876654433
No 120
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=89.66 E-value=14 Score=32.65 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=71.1
Q ss_pred ceEEEcC-CCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317 107 KSFAVDM-KGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL 182 (269)
Q Consensus 107 ~giavd~-~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~ 182 (269)
.++.+.+ +++.||+-......+..| ..+. .++.|.. .-.+.|.+.|+ |.-+++-..+..
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe----------------sDINsv~ffP~-G~afatGSDD~t 252 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE----------------SDINSVRFFPS-GDAFATGSDDAT 252 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc----------------cccceEEEccC-CCeeeecCCCce
Confidence 3466666 899999887666666666 3444 5665542 23467888887 888888888888
Q ss_pred EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc---CCCCccccc
Q 024317 183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR---HTGRLDPPL 242 (269)
Q Consensus 183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad---~~g~~~~~~ 242 (269)
.+.|+++..........- . ......++++...|+|..+- ++-.+|.-.
T Consensus 253 cRlyDlRaD~~~a~ys~~---~---------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYSHD---S---------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred eEEEeecCCcEEeeeccC---c---------ccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence 999998775443332220 0 22446789999999888884 444555544
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.35 E-value=19 Score=35.68 Aligned_cols=116 Identities=7% Similarity=-0.111 Sum_probs=72.8
Q ss_pred CCCceEEEcC-CCCEEEEeCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC
Q 024317 104 DKPKSFAVDM-KGNIYVADKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN 180 (269)
Q Consensus 104 ~~P~giavd~-~G~lyVaD~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n 180 (269)
++-+.|++.| |++.|++=.-.++||.++- +-+ ..+.... ...+.+++.|+ |.-.|.-+.+
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------------~lITAvcy~Pd-Gk~avIGt~~ 472 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR----------------DLITAVCYSPD-GKGAVIGTFN 472 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh----------------hhheeEEeccC-CceEEEEEec
Confidence 3457899998 7778888888889998883 333 4443321 23578999998 7777777888
Q ss_pred CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC--cEEEEcCCCCccccc
Q 024317 181 QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA--RPYIIRHTGRLDPPL 242 (269)
Q Consensus 181 ~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g--~lyVad~~g~~~~~~ 242 (269)
+.++.++..+.....-.....-.+.. . .-.+..|+.+.+.. ++.|+..+.||+-.+
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk---~---~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKK---K---QGKRITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCcc---c---cCceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 99999998886654433221011100 0 00234555554333 477777777777655
No 122
>PTZ00420 coronin; Provisional
Probab=89.24 E-value=23 Score=34.52 Aligned_cols=121 Identities=12% Similarity=0.009 Sum_probs=70.3
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS 123 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~ 123 (269)
...+++++|.+++++++-+..+.|..||+. ..+. ..... ....- ....-..-..+++++++. ++++=..
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~--t~~~~~~~i~-~p~~~------L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIP--HNDESVKEIK-DPQCI------LKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECC--CCCccccccc-cceEE------eecCCCcEEEEEECCCCCeEEEEEeC
Confidence 357788876557788887778889988863 1221 11000 00000 001112346789988876 4445455
Q ss_pred CCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 124 NHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 124 n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
.+.|+.+|.... ..+.. -.....++++++ |.++++-...+.|+.|++.....
T Consensus 147 DgtIrIWDl~tg~~~~~i~~-----------------~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQINM-----------------PKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCeEEEEECCCCcEEEEEec-----------------CCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcE
Confidence 778988885432 22211 013467888887 66766665567888888776543
No 123
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=89.15 E-value=14 Score=31.97 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCCCeE
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n~~I 183 (269)
.-..|.+..+|.-..+-...+.+++.|-... .+-+ . -+++.| +.|.+.|.++.|++.|. ++.|
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR---~----------~~~~spVn~vvlhpnQteLis~dq-sg~i 148 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQR---N----------YQHNSPVNTVVLHPNQTELISGDQ-SGNI 148 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCc--ccch---h----------ccCCCCcceEEecCCcceEEeecC-CCcE
Confidence 3355777778886666666667776663211 0000 0 012333 68999999899999998 4679
Q ss_pred EEEECCCCeEEEec
Q 024317 184 RQINLKPEDCSKSS 197 (269)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (269)
+++++.........
T Consensus 149 rvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 149 RVWDLGENSCTHEL 162 (311)
T ss_pred EEEEccCCcccccc
Confidence 99998887665543
No 124
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.92 E-value=15 Score=31.87 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=85.5
Q ss_pred Cc-ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 46 NP-HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 46 ~P-~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
.| ..|++.|.+++|+++|. ++.|+.+|+. .+--..... ......-..++++++|...++-...
T Consensus 125 spVn~vvlhpnQteLis~dq-sg~irvWDl~--~~~c~~~li-------------Pe~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQ-SGNIRVWDLG--ENSCTHELI-------------PEDDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred CCcceEEecCCcceEEeecC-CCcEEEEEcc--CCccccccC-------------CCCCcceeeEEEcCCCcEEEEecCC
Confidence 44 56888888899999996 5678888873 121111111 0111233567777777766665444
Q ss_pred CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317 125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS 201 (269)
Q Consensus 125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~ 201 (269)
++.++.+-- +. +.+...... ++.=.+-.-.-++|+ +..+++-.....+++++.++-+.....-.
T Consensus 189 G~cyvW~l~~~~~~s~l~P~~k~----------~ah~~~il~C~lSPd-~k~lat~ssdktv~iwn~~~~~kle~~l~-- 255 (311)
T KOG0315|consen 189 GNCYVWRLLNHQTASELEPVHKF----------QAHNGHILRCLLSPD-VKYLATCSSDKTVKIWNTDDFFKLELVLT-- 255 (311)
T ss_pred ccEEEEEccCCCccccceEhhhe----------ecccceEEEEEECCC-CcEEEeecCCceEEEEecCCceeeEEEee--
Confidence 444444421 11 222211100 111122334567898 67777777788899999888733222111
Q ss_pred cCCCcccceeeeeccceeeEEEecCCcEEEEc---CCCCccccc
Q 024317 202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR---HTGRLDPPL 242 (269)
Q Consensus 202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad---~~g~~~~~~ 242 (269)
..+.| --+-++..+|+..|+- +..|+|...
T Consensus 256 ---gh~rW--------vWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 256 ---GHQRW--------VWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred ---cCCce--------EEeeeeccCccEEEecCCCCceeecccc
Confidence 11122 3456778888666654 445666555
No 125
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=88.89 E-value=13 Score=35.36 Aligned_cols=167 Identities=8% Similarity=0.026 Sum_probs=90.2
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I 127 (269)
..++++ ..|--+++-+....|..||+. ..+-....+ .+.+.+.-..-+.+.....|+.+++=+++...
T Consensus 171 sal~~D-p~GaR~~sGs~Dy~v~~wDf~-gMdas~~~f----------r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 171 SALAVD-PSGARFVSGSLDYTVKFWDFQ-GMDASMRSF----------RQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EEeeec-CCCceeeeccccceEEEEecc-cccccchhh----------hccCcccccccceeeecCCCCeEEEEecCcce
Confidence 446775 467777787777888888763 111111111 11111222233567777789988888889999
Q ss_pred EEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC--eEEEecccCccC
Q 024317 128 RKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE--DCSKSSQSGSAL 203 (269)
Q Consensus 128 ~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~--~~~~~~~~g~~~ 203 (269)
..+|.+|. ..+. .+.. +. .+-..+.+....-++-+..|.+...|++-...+.+|.|+.+.. .+..+... +.
T Consensus 239 kl~DRdG~~~~e~~-KGDQ-YI-~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--~~ 313 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFS-KGDQ-YI-RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--PA 313 (641)
T ss_pred eEEccCCceeeeee-ccch-hh-hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec--cC
Confidence 99999997 2222 1111 00 0000011112223444557777788888888887777776653 33333332 11
Q ss_pred CCcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317 204 GAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD 239 (269)
Q Consensus 204 g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~ 239 (269)
+.. =..|...+++++|.++-+- .+|.|+
T Consensus 314 ~g~--------Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 314 GGK--------RVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred CCc--------ccCceeeecCCCcchhhhcccCCcee
Confidence 111 1335667778888663332 344443
No 126
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.74 E-value=20 Score=33.33 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=60.1
Q ss_pred eEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-E-EEEeC-C
Q 024317 49 SVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-I-YVADK-S 123 (269)
Q Consensus 49 giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-l-yVaD~-~ 123 (269)
.++++|++..|+++.. ++..|+.+|+ ..+++..+... -......++.++|+ | |++|. +
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~---~tg~~~~lt~~--------------~~~~~~~~wSPDG~~I~f~s~~~g 309 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDL---ASGQIRQVTDG--------------RSNNTEPTWFPDSQNLAYTSDQAG 309 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEEC---CCCCEEEccCC--------------CCCcCceEECCCCCEEEEEeCCCC
Confidence 3456665555655422 3345666664 23444333211 01224567888887 4 55654 3
Q ss_pred CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--CCeEEEEECCCCeEEE
Q 024317 124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--NQLIRQINLKPEDCSK 195 (269)
Q Consensus 124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--n~~I~~~~~~~~~~~~ 195 (269)
..+|++++.++. ..+...+ ......+++|++..|+++... ...|+.++.+++....
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~----------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG----------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC----------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 457888887653 4432211 112345678876667665443 2457788877665443
No 127
>smart00284 OLF Olfactomedin-like domains.
Probab=88.57 E-value=14 Score=32.13 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=44.3
Q ss_pred eEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC--EEEEeCCCCE
Q 024317 49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNHV 126 (269)
Q Consensus 49 giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~--lyVaD~~n~~ 126 (269)
|-+| .+|.+|..-...+.|.|+||. ++++....--...++.+.-.-.-.-..=.++|+|.+|. ||-+...++.
T Consensus 78 G~VV--YngslYY~~~~s~~iiKydL~---t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ 152 (255)
T smart00284 78 GVVV--YNGSLYFNKFNSHDICRFDLT---TETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK 152 (255)
T ss_pred cEEE--ECceEEEEecCCccEEEEECC---CCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC
Confidence 4455 479999988888999999983 33332211111111111000000001225788888886 6666544444
Q ss_pred --EEEEeCCcc
Q 024317 127 --IRKITNLGV 135 (269)
Q Consensus 127 --I~~~~~~g~ 135 (269)
|.++|++..
T Consensus 153 ivvSkLnp~tL 163 (255)
T smart00284 153 IVISKLNPATL 163 (255)
T ss_pred EEEEeeCcccc
Confidence 358888654
No 128
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.26 E-value=18 Score=32.19 Aligned_cols=117 Identities=16% Similarity=0.101 Sum_probs=64.6
Q ss_pred EEEcCCCC-EEEEeC----CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317 109 FAVDMKGN-IYVADK----SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL 182 (269)
Q Consensus 109 iavd~~G~-lyVaD~----~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~ 182 (269)
-+++++|+ ||.++. +.++|-++|.... ..+....+.+ -.|+.|.+.+++..|.|+..+=..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G-------------IGPHel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG-------------IGPHELLLMPDGETLVVANGGIET 122 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC-------------cChhhEEEcCCCCEEEEEcCCCcc
Confidence 45557888 787753 4678999997743 4443322222 358999999985599999865111
Q ss_pred E-----EEEECCCC--eEEEe-cccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317 183 I-----RQINLKPE--DCSKS-SQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD 239 (269)
Q Consensus 183 I-----~~~~~~~~--~~~~~-~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~ 239 (269)
- .+++++.. .+++. ...|.-..+..+. ......+..=++++.+|.++++. +.|...
T Consensus 123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred CcccCceecChhhcCCceEEEecCCCceeeeeecC-ccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 0 12232221 22222 2222111211111 11122346779999999999998 555543
No 129
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=87.39 E-value=23 Score=32.35 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=36.7
Q ss_pred eEEEcCCCC-EEEEeC--CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEE-EECC-C
Q 024317 108 SFAVDMKGN-IYVADK--SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI-SDHG-N 180 (269)
Q Consensus 108 giavd~~G~-lyVaD~--~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyV-aD~~-n 180 (269)
.+++.++|. |+++.. ++..|+.++.++. ..+..... . ....++++++..|++ ++.. .
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--------------~--~~~~~~s~dg~~l~~~s~~~g~ 301 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPG--------------I--DTEPSWSPDGKSIAFTSDRGGS 301 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCC--------------C--CCCEEECCCCCEEEEEECCCCC
Confidence 467888887 666543 3456888886543 33322110 0 112345566445543 4432 3
Q ss_pred CeEEEEECCCCeE
Q 024317 181 QLIRQINLKPEDC 193 (269)
Q Consensus 181 ~~I~~~~~~~~~~ 193 (269)
..|+.++.++...
T Consensus 302 ~~iy~~d~~~~~~ 314 (417)
T TIGR02800 302 PQIYMMDADGGEV 314 (417)
T ss_pred ceEEEEECCCCCE
Confidence 3677777766543
No 130
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=87.19 E-value=18 Score=30.96 Aligned_cols=174 Identities=13% Similarity=0.085 Sum_probs=77.4
Q ss_pred CccCCCCcce---EEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317 40 GHQLEINPHS---VIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116 (269)
Q Consensus 40 g~~~~~~P~g---iav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~ 116 (269)
|...|-.|.. |.- -.+.-+|+-...|-.|... +++|++....--|.... .....+| -..|.+|.
T Consensus 83 G~sefl~pl~akei~S-r~~~~l~~~S~rnvtvnar----n~~g~v~~~l~lgp~~v---e~~~~~F-----ev~~~dgk 149 (292)
T KOG3950|consen 83 GDSEFLQPLYAKEIHS-RPGSPLYLQSARNVTVNAR----NPNGKVTGQLILGPKKV---EAQCKRF-----EVNDVDGK 149 (292)
T ss_pred chhhhhhhhhhhhhhc-CCCCceEEEeccCeeEEcc----CCCCceeeeEEechHHH---hhhhcee-----EEecCCCc
Confidence 4455666643 222 1245566666566555554 67888776443321100 0011111 33445777
Q ss_pred -EEEEeCC-----CCEEEEEeCCcceEEecCCCCCCCCCCCcccc---------ccccCceEEEEeCCCCEEEEEECCCC
Q 024317 117 -IYVADKS-----NHVIRKITNLGVTTIAGGGSKKEGRADGPAQN---------ASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 117 -lyVaD~~-----n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~---------~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
||.+|.. .+++++....|. .+ ......+.....+..+ -.+..|.||-+....|++=++...
T Consensus 150 ~LFsad~dEv~vgae~LRv~g~~Ga-vF-~~sveTp~VRa~P~~~LRLESPTRsl~m~Apk~v~i~a~AG~iea~~~~-- 225 (292)
T KOG3950|consen 150 LLFSADEDEVVVGAEKLRVLGAEGA-VF-EHSVETPHVRADPFQELRLESPTRSLSMEAPKGVEIQAAAGNIEATCLT-- 225 (292)
T ss_pred EEEEeccceeEeeeeeeEeccCCcc-cc-cccccCCcccCCCCccccccCCcceeeeecCCCceeeeccCCceEEEee--
Confidence 7888853 233344444442 11 1111111111111111 234556666665555665544431
Q ss_pred eEEEEECCCCeEEEecccC---ccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 182 LIRQINLKPEDCSKSSQSG---SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 182 ~I~~~~~~~~~~~~~~~~g---~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
-|+.-+.+|....-...-- .+.+... +.+ .-....-||+-++|+||.+-
T Consensus 226 di~~~s~dGeirLeas~I~lp~L~~g~~~--psg-S~q~v~eiCvC~nGkLfLs~ 277 (292)
T KOG3950|consen 226 DLRLESKDGEIRLEASKIRLPKLPTGSYT--PSG-SRQKVFEICVCPNGKLFLSQ 277 (292)
T ss_pred eeeEeccCceEEEeeceeecccccCCCCC--CCC-CcceEEEEEEecCCcEEEec
Confidence 1444445554433222110 1111111 111 11446789999999999954
No 131
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=86.97 E-value=25 Score=32.30 Aligned_cols=120 Identities=19% Similarity=0.187 Sum_probs=75.5
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I 127 (269)
..+.++| .+...++-++...+..+|+. ..-...+..| .-+.-..|+..|+|..+.+-..++.|
T Consensus 119 l~~~fsp-~g~~l~tGsGD~TvR~WD~~--TeTp~~t~Kg--------------H~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 119 LSVQFSP-TGSRLVTGSGDTTVRLWDLD--TETPLFTCKG--------------HKNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred EEEEecC-CCceEEecCCCceEEeeccC--CCCcceeecC--------------CccEEEEEEECCCcchhhccccCCeE
Confidence 5677776 78888888888888888763 2222233222 23466789999999999999999999
Q ss_pred EEEeCC-cc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317 128 RKITNL-GV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS 196 (269)
Q Consensus 128 ~~~~~~-g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~ 196 (269)
+.+||. |. ..+.|...... +---.|-.+ +|. ..++.+-...+.|+.++...+...+.
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It---------~Lawep~hl--~p~-~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWIT---------ALAWEPLHL--VPP-CRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEecCCCCCcccccccCccccee---------EEeeccccc--CCC-ccceecccCCCCEEEEEccCceEEEE
Confidence 999964 32 44444422110 001123222 333 45666666677788888777655543
No 132
>PRK05137 tolB translocation protein TolB; Provisional
Probab=86.74 E-value=27 Score=32.48 Aligned_cols=114 Identities=13% Similarity=0.150 Sum_probs=56.6
Q ss_pred ceEEEecCCCeEEE-EeC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE-e-C
Q 024317 48 HSVIDRPGSSDLIV-LDS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA-D-K 122 (269)
Q Consensus 48 ~giav~~~~g~lyV-~D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa-D-~ 122 (269)
...+++|++..|++ ++. +...|+.+|+ ..|+...+.... + .-...++.++|. |+++ + .
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl---~~g~~~~l~~~~------g--------~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDL---ETGQRELVGNFP------G--------MTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEEC---CCCcEEEeecCC------C--------cccCcEECCCCCEEEEEEecC
Confidence 34566665555544 432 3467888875 345444432110 0 112456777776 4433 3 2
Q ss_pred CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-EC-CCCeEEEEECCCCeEE
Q 024317 123 SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DH-GNQLIRQINLKPEDCS 194 (269)
Q Consensus 123 ~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~-~n~~I~~~~~~~~~~~ 194 (269)
++..|++++.++. ..+.... ......+++|++..|+++ |. +...|++++.+++...
T Consensus 268 g~~~Iy~~d~~~~~~~~Lt~~~----------------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 268 GNTDIYTMDLRSGTTTRLTDSP----------------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR 327 (435)
T ss_pred CCceEEEEECCCCceEEccCCC----------------CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence 3456777776544 3332211 011234566765555443 32 2346777777665443
No 133
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.70 E-value=24 Score=32.01 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=50.1
Q ss_pred ceEEEcCCCCEEEEeCCCCEE-EEEe-CCcce-EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 107 KSFAVDMKGNIYVADKSNHVI-RKIT-NLGVT-TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I-~~~~-~~g~~-~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
..++++++|.+.-+-...++| |+|. ++|.. .-.-+|.. ...-..|+++++ ...+.+-..++.|
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------------~~~IySL~Fs~d-s~~L~~sS~TeTV 242 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------------PVSIYSLSFSPD-SQFLAASSNTETV 242 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------------eeEEEEEEECCC-CCeEEEecCCCeE
Confidence 569999999988888777765 5555 67762 22222221 344578999998 6676677778889
Q ss_pred EEEECCCCe
Q 024317 184 RQINLKPED 192 (269)
Q Consensus 184 ~~~~~~~~~ 192 (269)
..|.++...
T Consensus 243 HiFKL~~~~ 251 (391)
T KOG2110|consen 243 HIFKLEKVS 251 (391)
T ss_pred EEEEecccc
Confidence 999887643
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=86.67 E-value=28 Score=35.24 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=61.9
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
+-+.|++++++..|+++++ ++-|.+++-. +..-...++--. -..-.+++. +.+.|++-+.++
T Consensus 15 G~t~i~~d~~gefi~tcgs-dg~ir~~~~~-sd~e~P~ti~~~--------------g~~v~~ia~--~s~~f~~~s~~~ 76 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGS-DGDIRKWKTN-SDEEEPETIDIS--------------GELVSSIAC--YSNHFLTGSEQN 76 (933)
T ss_pred ceEEEEEcCCCCEEEEecC-CCceEEeecC-CcccCCchhhcc--------------CceeEEEee--cccceEEeeccc
Confidence 4678899876666666664 4456665321 000111111000 001233444 455788888899
Q ss_pred EEEEEe-CCcc-eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 126 VIRKIT-NLGV-TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 126 ~I~~~~-~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
.|.++. +.+. .++.. +|..| ..++++.+ |...++-...-.|..++....
T Consensus 77 tv~~y~fps~~~~~iL~----------------Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILA----------------RFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred eEEEeeCCCCCccceee----------------eeeccceEEEEecC-CcEEEeecCceeEEEEecccc
Confidence 999887 4444 33332 24444 57888876 666666666666777776553
No 135
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=86.47 E-value=22 Score=31.21 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=75.5
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCC--CCccEEE-EEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLS--EESVVKR-LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK 122 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~--~~g~~~~-~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~ 122 (269)
.-..+++.+.+-++|++-+....|..+++.-+ .-|.+.. +.| .-.+-.++++.++|+.+++-.
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--------------HsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--------------HSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec--------------cceEecceEEccCCceEEecc
Confidence 34667776666788888888888888877421 1122121 211 112446899999999999998
Q ss_pred CCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 123 SNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 123 ~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
....++..|..+ + ..+.|... -..+++++++ +.-.|+-...+.|..++.-+.-.
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~----------------dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTK----------------DVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCC----------------ceEEEEecCC-CceeecCCCcceeeeeeecccEE
Confidence 888999999554 4 55665432 2357888887 55566666566666666655443
No 136
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.34 E-value=31 Score=33.92 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=43.8
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 104 DKPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
..-+|+++-+++. |++-...+.|+..+.+|. ....|.. +.-..|+.... +.+.|+-..++
T Consensus 180 D~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ght----------------n~vYsis~~~~-~~~Ivs~gEDr 241 (745)
T KOG0301|consen 180 DCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHT----------------NFVYSISMALS-DGLIVSTGEDR 241 (745)
T ss_pred hheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccc----------------eEEEEEEecCC-CCeEEEecCCc
Confidence 3456788855433 455555678888888776 5555542 22345554443 67888888888
Q ss_pred eEEEEECC
Q 024317 182 LIRQINLK 189 (269)
Q Consensus 182 ~I~~~~~~ 189 (269)
.++.|+.+
T Consensus 242 tlriW~~~ 249 (745)
T KOG0301|consen 242 TLRIWKKD 249 (745)
T ss_pred eEEEeecC
Confidence 88888766
No 137
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.24 E-value=28 Score=32.29 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=56.6
Q ss_pred ceEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE-e-C
Q 024317 48 HSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA-D-K 122 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa-D-~ 122 (269)
..++++|++..|.++.. +...|+.+|+ ..|+...+.... + .-..+++.++|+ |+++ + .
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl---~tg~~~~l~~~~------g--------~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDL---RSGARKVVASFR------G--------HNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeC---CCCceEEEecCC------C--------ccCceeECCCCCEEEEEEecC
Confidence 45677776666644432 3456888875 234433332110 0 112467888887 5554 3 2
Q ss_pred CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-EC-CCCeEEEEECCCCeE
Q 024317 123 SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DH-GNQLIRQINLKPEDC 193 (269)
Q Consensus 123 ~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~-~n~~I~~~~~~~~~~ 193 (269)
++-.|+.++.++. ..+.... ......+++|++..|+++ +. ++-+|+.++..+...
T Consensus 270 g~~~Iy~~d~~~~~~~~lt~~~----------------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 270 GVLNIYVMGANGGTPSQLTSGA----------------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred CcEEEEEEECCCCCeEeeccCC----------------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 3345777776543 4433211 112345667764445443 32 234566666655433
No 138
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=85.77 E-value=12 Score=33.44 Aligned_cols=115 Identities=10% Similarity=0.154 Sum_probs=72.0
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc---cEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES---VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g---~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
..+.+-| ...|.++.+..+.|..+|+. ... ..+++ .+ ...-..|.++|.|+...+-+..
T Consensus 176 n~l~FHP-re~ILiS~srD~tvKlFDfs--K~saKrA~K~~--------qd-------~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 176 NDLDFHP-RETILISGSRDNTVKLFDFS--KTSAKRAFKVF--------QD-------TEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred cceeecc-hhheEEeccCCCeEEEEecc--cHHHHHHHHHh--------hc-------cceeeeEeecCCCceEEEecCC
Confidence 4566644 67888888888888888752 111 01111 01 1122579999999966666667
Q ss_pred CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317 125 HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED 192 (269)
Q Consensus 125 ~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~ 192 (269)
..++.+|-+.- -.+...+. ++.-...+.+-+++. ++|||+-...+.|..|+--.+.
T Consensus 238 p~~rlYdv~T~QcfvsanPd-----------~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPD-----------DQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred CceeEEeccceeEeeecCcc-----------cccccceeEEEecCC-ccEEEEeccCCcEEeeccccHH
Confidence 77888876554 22222211 111233467888886 9999999999999999855443
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.75 E-value=14 Score=34.90 Aligned_cols=66 Identities=8% Similarity=0.131 Sum_probs=50.4
Q ss_pred ceEEEcCCCC-EEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCCC
Q 024317 107 KSFAVDMKGN-IYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 107 ~giavd~~G~-lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n~ 181 (269)
.||++.+... |+|+=....+|..||...+ .+++ ...| +.+++.++ |..+++-..++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------------------y~~Plstvaf~~~-G~~L~aG~s~G 272 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------------------YSHPLSTVAFSEC-GTYLCAGNSKG 272 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceee------------------ecCCcceeeecCC-ceEEEeecCCc
Confidence 6899998555 8887777889999986443 2222 1233 46898886 99999999999
Q ss_pred eEEEEECCCC
Q 024317 182 LIRQINLKPE 191 (269)
Q Consensus 182 ~I~~~~~~~~ 191 (269)
+|..++.++.
T Consensus 273 ~~i~YD~R~~ 282 (673)
T KOG4378|consen 273 ELIAYDMRST 282 (673)
T ss_pred eEEEEecccC
Confidence 9999998875
No 140
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=85.35 E-value=32 Score=32.06 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=50.3
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
...++++||.||.+-..+..+..+|-... ..|.|.. .-...|+++. +|+-.++....+.|
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght----------------~~vk~i~FsE-NGY~Lat~add~~V 413 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT----------------GPVKAISFSE-NGYWLATAADDGSV 413 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC----------------CceeEEEecc-CceEEEEEecCCeE
Confidence 56889999999999999999999985433 3332211 1135799876 58888888878889
Q ss_pred EEEECCCCe
Q 024317 184 RQINLKPED 192 (269)
Q Consensus 184 ~~~~~~~~~ 192 (269)
..|+++...
T Consensus 414 ~lwDLRKl~ 422 (506)
T KOG0289|consen 414 KLWDLRKLK 422 (506)
T ss_pred EEEEehhhc
Confidence 999887643
No 141
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=85.16 E-value=12 Score=31.88 Aligned_cols=116 Identities=11% Similarity=0.122 Sum_probs=56.6
Q ss_pred eEEEecCCCeEEEEeCCCCEEEEEecCCCCC-----ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317 49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-----SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (269)
Q Consensus 49 giav~~~~g~lyV~D~~~~~I~~~dl~~~~~-----g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~ 123 (269)
.|+++ ..|.||..+. ...+++.....+.. +.-+.+.+. .-+...-|..+++|.||..+..
T Consensus 85 ~i~~d-~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~~-------------GW~~f~~vfa~~~GvLY~i~~d 149 (229)
T PF14517_consen 85 FIFFD-PTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGGT-------------GWNDFDAVFAGPNGVLYAITPD 149 (229)
T ss_dssp EEEE--TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE-S-------------SGGGEEEEEE-TTS-EEEEETT
T ss_pred EEEec-CCccEEEecc-ccceeeccCCCccCcchhhccceecccC-------------CCccceEEEeCCCccEEEEcCC
Confidence 78885 5899997775 46677775421111 011222111 2334567999999999999964
Q ss_pred CCEEEEE-eCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 124 NHVIRKI-TNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 124 n~~I~~~-~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
+++.+. .+++. ..+...... ........+.-|...++ ++||..+. ++.|+|..+..
T Consensus 150 -g~~~~~~~p~~~~~~W~~~s~~--------v~~~gw~~~~~i~~~~~-g~L~~V~~-~G~lyr~~~p~ 207 (229)
T PF14517_consen 150 -GRLYRRYRPDGGSDRWLSGSGL--------VGGGGWDSFHFIFFSPD-GNLWAVKS-NGKLYRGRPPQ 207 (229)
T ss_dssp -E-EEEE---SSTT--HHHH-EE--------EESSSGGGEEEEEE-TT-S-EEEE-E-TTEEEEES---
T ss_pred -CceEEeCCCCCCCCccccccce--------eccCCcccceEEeeCCC-CcEEEEec-CCEEeccCCcc
Confidence 466666 44442 222111000 00011455788998887 89998855 68898776443
No 142
>PLN00181 protein SPA1-RELATED; Provisional
Probab=85.11 E-value=46 Score=33.66 Aligned_cols=67 Identities=3% Similarity=-0.067 Sum_probs=39.8
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCCc-------c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNLG-------V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD 177 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~g-------~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD 177 (269)
..+.+. ++..+++=...+.|+.++... . ..+.+. -...+.++++++ +.++++-
T Consensus 665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh----------------~~~i~~v~~s~~-~~~lasg 726 (793)
T PLN00181 665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH----------------TNVKNFVGLSVS-DGYIATG 726 (793)
T ss_pred EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC----------------CCCeeEEEEcCC-CCEEEEE
Confidence 345553 556555555567788777431 1 122111 123467888887 5666666
Q ss_pred CCCCeEEEEECCCC
Q 024317 178 HGNQLIRQINLKPE 191 (269)
Q Consensus 178 ~~n~~I~~~~~~~~ 191 (269)
..++.|..++....
T Consensus 727 s~D~~v~iw~~~~~ 740 (793)
T PLN00181 727 SETNEVFVYHKAFP 740 (793)
T ss_pred eCCCEEEEEECCCC
Confidence 67788999987644
No 143
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=84.11 E-value=27 Score=30.28 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=71.4
Q ss_pred CCeEEEEeCCCCEEEEEecC------------------CCCCccEEEEEcCCcccCCCC-Cc-ccccCCCCceE---EEc
Q 024317 56 SSDLIVLDSSRSAFYTLSFP------------------LSEESVVKRLAGDGVQGYSDG-EP-GSARFDKPKSF---AVD 112 (269)
Q Consensus 56 ~g~lyV~D~~~~~I~~~dl~------------------~~~~g~~~~~~g~g~~g~~dg-~~-~~~~~~~P~gi---avd 112 (269)
+++-+++......|+.+|.. ++++|.+.+++-.+.-.|-|. .. .-..+..|+-| .+.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~ 233 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLH 233 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccccccc
Confidence 45555555666666666632 256777766654322111111 11 12335566554 455
Q ss_pred CCCCEEEEeCCCCEEEEEeCC-cceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317 113 MKGNIYVADKSNHVIRKITNL-GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK 189 (269)
Q Consensus 113 ~~G~lyVaD~~n~~I~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~ 189 (269)
|+-++|||-.....+++||-+ |...-.- .. +.+.-..++-++|+ |.+|-+-...+.|+.+...
T Consensus 234 P~k~~fVaGged~~~~kfDy~TgeEi~~~-nk------------gh~gpVhcVrFSPd-GE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NK------------GHFGPVHCVRFSPD-GELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCCceEEecCcceEEEEEeccCCceeeec-cc------------CCCCceEEEEECCC-CceeeccCCCceEEEEEec
Confidence 677899998888889999853 3311110 01 12334578999998 9999999988888877643
No 144
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=83.94 E-value=28 Score=30.32 Aligned_cols=78 Identities=13% Similarity=0.023 Sum_probs=40.4
Q ss_pred ccccCceEEEEeCC--CC--EEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEE-ecCCcEE
Q 024317 156 ASFSNDFELTFVPH--IC--ALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVI-GFVARPY 230 (269)
Q Consensus 156 ~~l~~P~gia~~~~--~g--~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~-d~~g~ly 230 (269)
..+..|.|+++-.+ -| .++|++.. +-|..+.+-.......+.. --..+ . .-..-.|+.+ |..|.||
T Consensus 150 s~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~~k----~vR~f-k---~~tQTEG~VaDdEtG~LY 220 (364)
T COG4247 150 SSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVGTK----LVRQF-K---IPTQTEGMVADDETGFLY 220 (364)
T ss_pred cCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEcce----eeEee-e---cCCcccceeeccccceEE
Confidence 34678899988543 23 45666664 6677766432211111000 00000 0 0012334444 4567999
Q ss_pred EEcCCCCccccc
Q 024317 231 IIRHTGRLDPPL 242 (269)
Q Consensus 231 Vad~~g~~~~~~ 242 (269)
|++.+..+|..-
T Consensus 221 IaeEdvaiWK~~ 232 (364)
T COG4247 221 IAEEDVAIWKYE 232 (364)
T ss_pred Eeeccceeeecc
Confidence 999888888654
No 145
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.70 E-value=12 Score=34.09 Aligned_cols=78 Identities=6% Similarity=-0.080 Sum_probs=54.9
Q ss_pred CCceEEEcCC--CCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 105 KPKSFAVDMK--GNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 105 ~P~giavd~~--G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
++.++.+-+. -.-|++-+..|.++.+|+... ..++-.... =+.-+.+++.|+++.||++|+. +
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-------------E~~is~~~l~p~gn~Iy~gn~~-g 269 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-------------ENPISSTGLTPSGNFIYTGNTK-G 269 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-------------cCcceeeeecCCCcEEEEeccc-c
Confidence 3467777544 458888888999999997654 444432110 1223678889998899999985 5
Q ss_pred eEEEEECCCCeEEEe
Q 024317 182 LIRQINLKPEDCSKS 196 (269)
Q Consensus 182 ~I~~~~~~~~~~~~~ 196 (269)
.+-.|+.+++.+...
T Consensus 270 ~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 270 QLAKFDLRGGKLLGC 284 (412)
T ss_pred hhheecccCceeecc
Confidence 699999998876544
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=83.35 E-value=24 Score=35.76 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=50.8
Q ss_pred ccCCCC-ceEEEcCCCCEEEEeCCCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEE
Q 024317 101 ARFDKP-KSFAVDMKGNIYVADKSNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLI 175 (269)
Q Consensus 101 ~~~~~P-~giavd~~G~lyVaD~~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyV 175 (269)
++|..| +.++++.+|+..++-...-.|..++.+- . ..+-|. ..| .+|.++|+ ++++.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-----------------~apVl~l~~~p~-~~fLA 154 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-----------------DAPVLQLSYDPK-GNFLA 154 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-----------------CCceeeeeEcCC-CCEEE
Confidence 456666 6789988999888777666777777432 2 444332 222 47889997 66666
Q ss_pred EECCCCeEEEEECCCCeE
Q 024317 176 SDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 176 aD~~n~~I~~~~~~~~~~ 193 (269)
+-..++.|+.|+.....+
T Consensus 155 vss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred EEecCceEEEEEcccchh
Confidence 666688899998876543
No 147
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.12 E-value=31 Score=30.18 Aligned_cols=80 Identities=9% Similarity=0.026 Sum_probs=41.4
Q ss_pred EeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCC-ccccc-c
Q 024317 166 FVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGR-LDPPL-Q 243 (269)
Q Consensus 166 ~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~-~~~~~-~ 243 (269)
+++-.+.||++-++ ++|.+.+++......+... ..++. . ........|.=+...-+|++---++.|+ +|++. .
T Consensus 143 i~~g~~sly~a~t~-G~vlavt~~~~~~~~~w~~--~~~~P-i-F~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~ 217 (354)
T KOG4649|consen 143 IAPGDGSLYAAITA-GAVLAVTKNPYSSTEFWAA--TRFGP-I-FASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK 217 (354)
T ss_pred ecCCCceEEEEecc-ceEEEEccCCCCcceehhh--hcCCc-c-ccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC
Confidence 45534899999985 6888888776543333221 01100 0 0111222333344344687777776655 44666 4
Q ss_pred ccccccc
Q 024317 244 HDMEALP 250 (269)
Q Consensus 244 ~~~~~~~ 250 (269)
+.....|
T Consensus 218 GpIf~~P 224 (354)
T KOG4649|consen 218 GPIFMEP 224 (354)
T ss_pred Cceeccc
Confidence 5554444
No 148
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.03 E-value=6 Score=36.93 Aligned_cols=75 Identities=12% Similarity=-0.020 Sum_probs=35.7
Q ss_pred CceEEEEeCCCCEEEEEECCCCeEEEEECCCCe---EE-EecccCccCCCcccceee-eeccceeeEEEecCC-cEEEEc
Q 024317 160 NDFELTFVPHICALLISDHGNQLIRQINLKPED---CS-KSSQSGSALGAVSVWVLV-SVLSCLVSLVIGFVA-RPYIIR 233 (269)
Q Consensus 160 ~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~---~~-~~~~~g~~~g~~~~~~~~-~~l~~p~gia~d~~g-~lyVad 233 (269)
-|++|.++-+...|||+....+-|++++..... ++ ...-.|...........+ ..-..|.=|.+..|| ++||+.
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 468999999889999999999999999987631 11 111111110000000111 122457888999999 999998
Q ss_pred C
Q 024317 234 H 234 (269)
Q Consensus 234 ~ 234 (269)
.
T Consensus 393 S 393 (461)
T PF05694_consen 393 S 393 (461)
T ss_dssp -
T ss_pred e
Confidence 3
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=82.80 E-value=42 Score=31.48 Aligned_cols=115 Identities=21% Similarity=0.201 Sum_probs=61.1
Q ss_pred EEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317 109 FAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL 188 (269)
Q Consensus 109 iavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~ 188 (269)
..|.+++++.+....++.|..+.......+.+.... ....+++++.++..||++. +.+.|+.|+.
T Consensus 309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--------------G~v~~~~fsSdsk~l~~~~-~~GeV~v~nl 373 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--------------GVVSDFTFSSDSKELLASG-GTGEVYVWNL 373 (514)
T ss_pred eEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--------------cEEeeEEEecCCcEEEEEc-CCceEEEEec
Confidence 567677776666666777777764332111111000 1236788888755555554 4568999998
Q ss_pred CCCeEEEe-cccCccCCCcccceeeeeccceeeEEEecCCcEEEEc--CCCCcccccccccccccCCC
Q 024317 189 KPEDCSKS-SQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR--HTGRLDPPLQHDMEALPNQS 253 (269)
Q Consensus 189 ~~~~~~~~-~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad--~~g~~~~~~~~~~~~~~~~~ 253 (269)
+...+..- ...|.. +-..+|...+|. |+|. ..|-+..+++-...+.-+|.
T Consensus 374 ~~~~~~~rf~D~G~v--------------~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSV--------------HGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred CCcceEEEEeecCcc--------------ceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCC
Confidence 88754443 223222 223466666666 4444 34555555533333333333
No 150
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=82.77 E-value=43 Score=33.75 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=62.2
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
.-.|+++| .-+.+.|+-...+-+..+|+. ...+..-..-+ ..+.+|.....-.++++-....
T Consensus 495 ~V~gla~D-~~n~~~vsa~~~Gilkfw~f~---~k~l~~~l~l~--------------~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 495 EVTGLAVD-GTNRLLVSAGADGILKFWDFK---KKVLKKSLRLG--------------SSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred ceeEEEec-CCCceEEEccCcceEEEEecC---CcceeeeeccC--------------CCcceeeeeehhhhhhhhcCce
Confidence 34789994 678888888777777777642 22211111000 1223333333333333333334
Q ss_pred EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 126 VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 126 ~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
.|+.+|-... ..+.|.+ +.-++++++|++..|.+++. .+.|+.|+.-...+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~----------------nritd~~FS~DgrWlisasm-D~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHG----------------NRITDMTFSPDGRWLISASM-DSTIRTWDLPTGTL 610 (910)
T ss_pred eEEEEEchhhhhhHHhhccc----------------cceeeeEeCCCCcEEEEeec-CCcEEEEeccCcce
Confidence 5555553322 3344432 45689999999666666665 46799999766543
No 151
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.73 E-value=35 Score=30.44 Aligned_cols=171 Identities=13% Similarity=0.045 Sum_probs=87.5
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEE-----EEEecCCCCCccEEEE-EcCCc--ccCCCCCcccccCCCCceEEEcCC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAF-----YTLSFPLSEESVVKRL-AGDGV--QGYSDGEPGSARFDKPKSFAVDMK 114 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I-----~~~dl~~~~~g~~~~~-~g~g~--~g~~dg~~~~~~~~~P~giavd~~ 114 (269)
..-.|+.|.+.|++..|.|++.+=..- .|++++ +..-.+..+ ..+|. .... -+..-...+-.-++++.+
T Consensus 97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~-tM~psL~~ld~~sG~ll~q~~--Lp~~~~~lSiRHLa~~~~ 173 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD-TMQPSLVYLDARSGALLEQVE--LPPDLHQLSIRHLAVDGD 173 (305)
T ss_pred CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh-hcCCceEEEecCCCceeeeee--cCccccccceeeEEecCC
Confidence 344788888876444888886532211 233332 222222222 11111 0000 000112334566899889
Q ss_pred CCEEEEeCCCCE-------EEEEeCCcceEEecCCCCCCCCCCCccccccc-cCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317 115 GNIYVADKSNHV-------IRKITNLGVTTIAGGGSKKEGRADGPAQNASF-SNDFELTFVPHICALLISDHGNQLIRQI 186 (269)
Q Consensus 115 G~lyVaD~~n~~-------I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l-~~P~gia~~~~~g~LyVaD~~n~~I~~~ 186 (269)
|.++++-..... +-.+..++.......+ ......| .+--.||++++++.+.++-...+++..|
T Consensus 174 G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p---------~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 174 GTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAP---------EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred CcEEEEEecCCCCCccCCeEEEEcCCCcceeccCC---------hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 998888754321 1111111111100000 0001123 4567899999866888999999999999
Q ss_pred ECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317 187 NLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL 242 (269)
Q Consensus 187 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~ 242 (269)
+...+...... .+.--.|++...++ ..+++..|.+....
T Consensus 245 d~~tg~~~~~~----------------~l~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 245 DAATGRLLGSV----------------PLPDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred ECCCCCEeecc----------------ccCceeeeeecCCc-eEEeCCCccEEEcc
Confidence 87665544321 12334567777666 55666666665444
No 152
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=82.08 E-value=19 Score=33.27 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=69.9
Q ss_pred CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCC
Q 024317 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKS 123 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~ 123 (269)
.--.+|+++| +|....+-+..+.+.++|+.. ...+.++. +.-+--..|.+.+ .|...++-.+
T Consensus 346 k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~--r~~ly~ip--------------AH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 346 KEILSVAFSP-NGYHLATGSSDNTCKVWDLRM--RSELYTIP--------------AHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred cceeeEeECC-CceEEeecCCCCcEEEeeecc--cccceecc--------------cccchhhheEecccCCeEEEEccc
Confidence 3457788864 777777777777777777642 22233332 2334556788887 6777888888
Q ss_pred CCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317 124 NHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI 186 (269)
Q Consensus 124 n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~ 186 (269)
.+.+..+...+- ..++|... ..-++.++++ +...++-...+.+..+
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~----------------kV~s~Dis~d-~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEG----------------KVISLDISPD-SQAIATSSFDRTIKLW 457 (459)
T ss_pred CcceeeecCCCcccchhhcCCcc----------------ceEEEEeccC-CceEEEeccCceeeec
Confidence 889998886553 66676532 2346777776 6666666655555443
No 153
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.46 E-value=50 Score=31.36 Aligned_cols=130 Identities=9% Similarity=-0.013 Sum_probs=62.6
Q ss_pred CceEEEcCCCCEEEEeC-------------CCCEEEEEeCCcc--eEEecCCCCCCCCC-----------CCcccccccc
Q 024317 106 PKSFAVDMKGNIYVADK-------------SNHVIRKITNLGV--TTIAGGGSKKEGRA-----------DGPAQNASFS 159 (269)
Q Consensus 106 P~giavd~~G~lyVaD~-------------~n~~I~~~~~~g~--~~~~g~~~~~~~~~-----------~~~~~~~~l~ 159 (269)
=+++...++|++.+.-. ....|..++++|+ ..+--......... .+......-.
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 36788889999444332 2457888888887 33322211100000 0011111224
Q ss_pred CceEEEEeCCCCEEEEEECCCCeEEEEE-CCCCeEEEecccCccCCC--cc-cce-------------eeeeccceeeEE
Q 024317 160 NDFELTFVPHICALLISDHGNQLIRQIN-LKPEDCSKSSQSGSALGA--VS-VWV-------------LVSVLSCLVSLV 222 (269)
Q Consensus 160 ~P~gia~~~~~g~LyVaD~~n~~I~~~~-~~~~~~~~~~~~g~~~g~--~~-~~~-------------~~~~l~~p~gia 222 (269)
+-++|.+++..+.|+|+-...+.|++|+ ..++..-..+..+.-... .- +.. .--....++...
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~ 351 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAH 351 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEE
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceE
Confidence 5689999996699999999888999999 445555555544211111 00 000 001234567777
Q ss_pred EecCC---cEEEEcCC
Q 024317 223 IGFVA---RPYIIRHT 235 (269)
Q Consensus 223 ~d~~g---~lyVad~~ 235 (269)
+-++| +|.|-|+.
T Consensus 352 ~~~~g~~~~l~vFDNg 367 (477)
T PF05935_consen 352 LIPDGPQGNLLVFDNG 367 (477)
T ss_dssp E-TTS---SEEEEE--
T ss_pred EcCCCCeEEEEEEECC
Confidence 88888 99999965
No 154
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.46 E-value=34 Score=29.52 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=62.1
Q ss_pred eEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC--EEEEeCCCC-
Q 024317 49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNH- 125 (269)
Q Consensus 49 giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~--lyVaD~~n~- 125 (269)
|-++ .+|.+|.--.+.+.|.|+||. ++.+....--...++.+..+....=..=.++|+|.+|. ||-+...++
T Consensus 73 G~vV--YngslYY~~~~s~~IvkydL~---t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 73 GHVV--YNGSLYYNKYNSRNIVKYDLT---TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred CeEE--ECCcEEEEecCCceEEEEECc---CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 4445 479999999899999999983 33333111111111111000000011125688887775 454454433
Q ss_pred -EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCC---CeE-EEEECCCC
Q 024317 126 -VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGN---QLI-RQINLKPE 191 (269)
Q Consensus 126 -~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n---~~I-~~~~~~~~ 191 (269)
.|.++|++.. .++-.. +..+ .+=|+--. |.||+++..+ .+| ..||...+
T Consensus 148 ivvskld~~tL~v~~tw~T~----------------~~k~~~~naFmvC-GvLY~~~s~~~~~~~I~yafDt~t~ 205 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTWNTS----------------YPKRSAGNAFMVC-GVLYATDSYDTRDTEIFYAFDTYTG 205 (250)
T ss_pred EEEEeeCcccCceEEEEEec----------------cCchhhcceeeEe-eEEEEEEECCCCCcEEEEEEECCCC
Confidence 4568887653 344321 1111 12223223 8999999875 334 55665543
No 155
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=81.37 E-value=41 Score=30.35 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=56.3
Q ss_pred CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeC-Cc
Q 024317 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN-LG 134 (269)
Q Consensus 56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~-~g 134 (269)
++.+|+++. .+.++.+|. .+|+...... +..+...++ .++.+|+++. ++++..++. +|
T Consensus 241 ~~~vy~~~~-~g~l~a~d~---~tG~~~W~~~---------------~~~~~~p~~-~~~~vyv~~~-~G~l~~~d~~tG 299 (377)
T TIGR03300 241 GGQVYAVSY-QGRVAALDL---RSGRVLWKRD---------------ASSYQGPAV-DDNRLYVTDA-DGVVVALDRRSG 299 (377)
T ss_pred CCEEEEEEc-CCEEEEEEC---CCCcEEEeec---------------cCCccCceE-eCCEEEEECC-CCeEEEEECCCC
Confidence 578888775 456888874 4666544321 112233444 3677999874 678999986 45
Q ss_pred ceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317 135 VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED 192 (269)
Q Consensus 135 ~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~ 192 (269)
+..+.-..... .....| ++. ++.||+.+. ++.|+.++...+.
T Consensus 300 ~~~W~~~~~~~----------~~~ssp---~i~--g~~l~~~~~-~G~l~~~d~~tG~ 341 (377)
T TIGR03300 300 SELWKNDELKY----------RQLTAP---AVV--GGYLVVGDF-EGYLHWLSREDGS 341 (377)
T ss_pred cEEEccccccC----------CccccC---EEE--CCEEEEEeC-CCEEEEEECCCCC
Confidence 43332111000 112333 222 368888875 4678888876443
No 156
>PTZ00421 coronin; Provisional
Probab=81.25 E-value=52 Score=31.44 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=46.4
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I 127 (269)
..|++.|..++++++-...+.|..||+ .+++....... .-..-.++++.++|.++++-...+.|
T Consensus 129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl---~tg~~~~~l~~-------------h~~~V~sla~spdG~lLatgs~Dg~I 192 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAGADMVVNVWDV---ERGKAVEVIKC-------------HSDQITSLEWNLDGSLLCTTSKDKKL 192 (493)
T ss_pred EEEEeCcCCCCEEEEEeCCCEEEEEEC---CCCeEEEEEcC-------------CCCceEEEEEECCCCEEEEecCCCEE
Confidence 457776655567777666778888875 23433222110 11234678999999988888888999
Q ss_pred EEEeCC
Q 024317 128 RKITNL 133 (269)
Q Consensus 128 ~~~~~~ 133 (269)
+.+|..
T Consensus 193 rIwD~r 198 (493)
T PTZ00421 193 NIIDPR 198 (493)
T ss_pred EEEECC
Confidence 999964
No 157
>PRK00178 tolB translocation protein TolB; Provisional
Probab=80.71 E-value=47 Score=30.63 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=57.0
Q ss_pred ceEEEecCCCeE-EEEeC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEE-Ee-C
Q 024317 48 HSVIDRPGSSDL-IVLDS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV-AD-K 122 (269)
Q Consensus 48 ~giav~~~~g~l-yV~D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyV-aD-~ 122 (269)
...+++|++..| |+++. ++..|+++++ .+|+...+.... + .....++.++|+ |++ .+ .
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l---~~g~~~~l~~~~------g--------~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNL---DTGRREQITNFE------G--------LNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEEC---CCCCEEEccCCC------C--------CcCCeEECCCCCEEEEEEccC
Confidence 445677666666 44433 3457888875 344444432110 0 112366777886 544 33 2
Q ss_pred CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-EC-CCCeEEEEECCCCeE
Q 024317 123 SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DH-GNQLIRQINLKPEDC 193 (269)
Q Consensus 123 ~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~-~n~~I~~~~~~~~~~ 193 (269)
++..|++++.++. ..+.... .......++|++..|+++ +. +...|++++..++..
T Consensus 265 g~~~Iy~~d~~~~~~~~lt~~~----------------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 265 GNPEIYVMDLASRQLSRVTNHP----------------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCceEEEEECCCCCeEEcccCC----------------CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3457888886654 3332211 011233556765556543 33 234677777665443
No 158
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=79.97 E-value=53 Score=30.77 Aligned_cols=154 Identities=10% Similarity=0.129 Sum_probs=87.1
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I 127 (269)
..++.+ ..|++.++.+-.+.||.|.+ .+|.+..+. .+....-..+.+..||..+|+-...++|
T Consensus 85 ~al~s~-n~G~~l~ag~i~g~lYlWel---ssG~LL~v~-------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 85 HALASS-NLGYFLLAGTISGNLYLWEL---SSGILLNVL-------------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred eeeecC-CCceEEEeecccCcEEEEEe---ccccHHHHH-------------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 445553 46777777767788888865 456544432 2334456778888899999998888888
Q ss_pred EEEeCCcceEEecCCCCCCCCCCCcccccccc----CceEEEEeCC--CCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317 128 RKITNLGVTTIAGGGSKKEGRADGPAQNASFS----NDFELTFVPH--ICALLISDHGNQLIRQINLKPEDCSKSSQSGS 201 (269)
Q Consensus 128 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~----~P~gia~~~~--~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~ 201 (269)
+.+.-.- .+....... ......|+ ..+++-+..- +..||-+-. .+.++.++...+.+.....
T Consensus 148 ~vW~l~~--lv~a~~~~~------~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~-D~t~k~wdlS~g~LLlti~--- 215 (476)
T KOG0646|consen 148 LVWLLTD--LVSADNDHS------VKPLHIFSDHTLSITDLQIGSGGTNARLYTASE-DRTIKLWDLSLGVLLLTIT--- 215 (476)
T ss_pred EEEEEEe--ecccccCCC------ccceeeeccCcceeEEEEecCCCccceEEEecC-CceEEEEEeccceeeEEEe---
Confidence 8765211 111000000 00000111 1233333321 234444333 3456666655554332211
Q ss_pred cCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc
Q 024317 202 ALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL 242 (269)
Q Consensus 202 ~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~ 242 (269)
....+..+++|+.+ ++||....|.+++..
T Consensus 216 ------------fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 216 ------------FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ------------cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 12557899999999 889999999999877
No 159
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=79.87 E-value=43 Score=29.69 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=69.2
Q ss_pred CCCCceEEEcCCCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEe---CCCCEEEEE
Q 024317 103 FDKPKSFAVDMKGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFV---PHICALLIS 176 (269)
Q Consensus 103 ~~~P~giavd~~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~---~~~g~LyVa 176 (269)
.-+.++|..+.+|++.|+=...+.|.+++ .+|. -.+.|.....+.- ....|..-++.-+. ++.+.|-|-
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~-----~~~~f~~QHdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTL-----PATNFSWQHDARFLNESNDDGTISLF 217 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccc-----cCCcEeeccCCEEeccCCCCCEEEEE
Confidence 44668899999999999999999999999 5666 3443431111111 12234444444444 233677777
Q ss_pred EC----------CCCeEEEEECCCCeEEEecccC-ccCCCcccceeeeeccceeeEEEecCCcEEEEcC
Q 024317 177 DH----------GNQLIRQINLKPEDCSKSSQSG-SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH 234 (269)
Q Consensus 177 D~----------~n~~I~~~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~ 234 (269)
|. ..+++..++............- .+.+- .-.....+..=++|+.+|...
T Consensus 218 DN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~--------~s~~~G~~Q~L~nGn~li~~g 278 (299)
T PF14269_consen 218 DNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGF--------YSPSQGSAQRLPNGNVLIGWG 278 (299)
T ss_pred cCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcc--------cccCCCcceECCCCCEEEecC
Confidence 76 4567888888866554433221 01110 112223344455688888873
No 160
>PLN00181 protein SPA1-RELATED; Provisional
Probab=79.65 E-value=73 Score=32.19 Aligned_cols=110 Identities=9% Similarity=0.037 Sum_probs=63.3
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCCC
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSNH 125 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n~ 125 (269)
.++++++..+...++-...+.|..||+ .+++. ..+.+. -..-.++++++ ++.++++=...+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~---~~~~~~~~~~~H--------------~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDV---ARSQLVTEMKEH--------------EKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEEC---CCCeEEEEecCC--------------CCCEEEEEEcCCCCCEEEEEcCCC
Confidence 345554444555555556777888875 23332 222211 11335788875 678877777778
Q ss_pred EEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 126 VIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 126 ~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
.|+.++.. +. ..+... .....+.+.+..+.++++-..++.|+.++....
T Consensus 599 ~v~iWd~~~~~~~~~~~~~-----------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKTK-----------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred EEEEEECCCCcEEEEEecC-----------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 89999854 33 222111 123456664444666666666778888887543
No 161
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=79.54 E-value=1.5 Score=40.73 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=31.3
Q ss_pred ccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc
Q 024317 101 ARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV 135 (269)
Q Consensus 101 ~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~ 135 (269)
..|..|.|+.+|++|..|++|...+.+.+.++.++
T Consensus 464 ~~fylphgl~~dkdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 464 NLFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred CceecCCcceecCCCcEEeecccchhhhhcccccc
Confidence 46899999999999999999999999998887653
No 162
>PRK00178 tolB translocation protein TolB; Provisional
Probab=79.14 E-value=53 Score=30.29 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=40.4
Q ss_pred eEEEcCCCC-EEE-EeC-CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--
Q 024317 108 SFAVDMKGN-IYV-ADK-SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-- 180 (269)
Q Consensus 108 giavd~~G~-lyV-aD~-~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-- 180 (269)
...+.++|. |++ ++. ++..|.+++.+ |. ..+...+. .....+++|++..|+++...+
T Consensus 291 ~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~----------------~~~~~~~Spdg~~i~~~~~~~~~ 354 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN----------------YNARPRLSADGKTLVMVHRQDGN 354 (430)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC----------------CccceEECCCCCEEEEEEccCCc
Confidence 356777776 444 443 34578888754 33 33332110 112345678877787776533
Q ss_pred CeEEEEECCCCeEEEe
Q 024317 181 QLIRQINLKPEDCSKS 196 (269)
Q Consensus 181 ~~I~~~~~~~~~~~~~ 196 (269)
..|+.++..++.....
T Consensus 355 ~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 355 FHVAAQDLQRGSVRIL 370 (430)
T ss_pred eEEEEEECCCCCEEEc
Confidence 3588888776654443
No 163
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.75 E-value=9.3 Score=32.23 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=42.9
Q ss_pred CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCC-CCCcccccCCCCceEEEcCCC-CEEEEeC
Q 024317 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYS-DGEPGSARFDKPKSFAVDMKG-NIYVADK 122 (269)
Q Consensus 56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~-dg~~~~~~~~~P~giavd~~G-~lyVaD~ 122 (269)
+|.+|---+...+|.+++. .+|++...+.-.. .. .-.......+-++|||.+++. ++|++-.
T Consensus 185 dG~lyANVw~t~~I~rI~p---~sGrV~~widlS~--L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 185 DGELYANVWQTTRIARIDP---DSGRVVAWIDLSG--LLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccEEEEeeeeecceEEEcC---CCCcEEEEEEccC--CchhcCccccccccccceeecCcCCeEEEecC
Confidence 5788888888999999974 5788887764311 10 011123447789999999966 5888764
No 164
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=78.47 E-value=63 Score=30.81 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=68.2
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
.|.-|+- ..+.|||.-+.|.-+. =.+ +++.-.++.|.+ ..-.|++.+++.++|++-....
T Consensus 331 ~iRtv~e--~~~di~vGTtrN~iL~-Gt~---~~~f~~~v~gh~--------------delwgla~hps~~q~~T~gqdk 390 (626)
T KOG2106|consen 331 PIRTVAE--GKGDILVGTTRNFILQ-GTL---ENGFTLTVQGHG--------------DELWGLATHPSKNQLLTCGQDK 390 (626)
T ss_pred CeeEEec--CCCcEEEeeccceEEE-eee---cCCceEEEEecc--------------cceeeEEcCCChhheeeccCcc
Confidence 3444443 4555777776554333 221 344433333332 1346899999999999988777
Q ss_pred EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceE-EEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317 126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFE-LTFVPHICALLISDHGNQLIRQINLKPEDCSKS 196 (269)
Q Consensus 126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~g-ia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~ 196 (269)
.++..+.... +.+.+.+... +.| .|.| ||+-...|..+|.|..+..+..+..++..+...
T Consensus 391 ~v~lW~~~k~~wt~~~~d~~~~----------~~f-hpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v 453 (626)
T KOG2106|consen 391 HVRLWNDHKLEWTKIIEDPAEC----------ADF-HPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVV 453 (626)
T ss_pred eEEEccCCceeEEEEecCceeE----------eec-cCcceEEEeeccceEEEEecccceeEEEEecCCceEEE
Confidence 8888872222 3333322111 112 4554 344334578888888887777777776555443
No 165
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=77.96 E-value=38 Score=29.69 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=43.8
Q ss_pred eEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcccc
Q 024317 162 FELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPP 241 (269)
Q Consensus 162 ~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~ 241 (269)
.-++.+|+ +.|++.-..++.|+.|+..|..+......-...+......+++.+-.+.. ...-.-.++|.++.|.++.+
T Consensus 47 Rkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~-s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSPD-CTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKK-SAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECCC-CcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeecccc-ccccceeEEEEeccceeeeE
Confidence 35888998 66666666689999999999777655433111122111122222222211 00102267777787777765
Q ss_pred c
Q 024317 242 L 242 (269)
Q Consensus 242 ~ 242 (269)
.
T Consensus 125 ~ 125 (282)
T PF15492_consen 125 L 125 (282)
T ss_pred E
Confidence 5
No 166
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=51 Score=30.26 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=64.7
Q ss_pred CcceEEEecC-CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCC-EEEEeC
Q 024317 46 NPHSVIDRPG-SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGN-IYVADK 122 (269)
Q Consensus 46 ~P~giav~~~-~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~-lyVaD~ 122 (269)
+++++.+-+. ..+-|++-+..|.+..||.. ...+....+.. ...| ..+..+++|+ ||++|+
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~--~qRRPV~~fd~--------------~E~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTR--HQRRPVAQFDF--------------LENPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCc--ccCcceeEecc--------------ccCcceeeeecCCCcEEEEecc
Confidence 4566666321 15677788888888888742 12222221111 1122 5688889998 999997
Q ss_pred CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
...+..||..+. ....+.. ..-..+.+|-..|. ..+..+-.-.+-||.++...
T Consensus 268 -~g~l~~FD~r~~kl~g~~~k-------------g~tGsirsih~hp~-~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 268 -KGQLAKFDLRGGKLLGCGLK-------------GITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred -cchhheecccCceeeccccC-------------CccCCcceEEEcCC-CceEEeeccceeEEEeeccc
Confidence 467888887655 2222111 11235678887774 44444444444566676655
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=77.04 E-value=66 Score=30.25 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=24.5
Q ss_pred cccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317 155 NASFSNDFELTFVPHICALLISDHGNQLIRQINL 188 (269)
Q Consensus 155 ~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~ 188 (269)
...+..+++++++|.+|.+-|... .+||..|.+
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~kL 511 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFKL 511 (514)
T ss_pred CCcccceEEEEecCCCceEEeecC-CCceeeEee
Confidence 445778899999998788777765 467776654
No 168
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=76.78 E-value=40 Score=27.63 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=63.8
Q ss_pred cceEEEecCCCeEEEEeC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEE-EeCC-
Q 024317 47 PHSVIDRPGSSDLIVLDS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYV-ADKS- 123 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyV-aD~~- 123 (269)
-..++++|.+..+.|... ...+|..+|. +++.....+. ...+.|..+|+|++.+ +..+
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~----~~~~i~~~~~---------------~~~n~i~wsP~G~~l~~~g~~n 122 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDV----KGKKIFSFGT---------------QPRNTISWSPDGRFLVLAGFGN 122 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcC----cccEeEeecC---------------CCceEEEECCCCCEEEEEEccC
Confidence 477888876666666543 3346777753 2332222211 1335699999999444 4443
Q ss_pred -CCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-----CCeEEEEECCCCeE
Q 024317 124 -NHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-----NQLIRQINLKPEDC 193 (269)
Q Consensus 124 -n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-----n~~I~~~~~~~~~~ 193 (269)
++.|..+|.+....+.... -...+.++.+|++..+..+.+. .+.++.++..|..+
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~---------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFE---------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCcEEEEEECCCCEEeeccc---------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 4578888876433333221 1234789999995566555542 34455555555543
No 169
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=76.50 E-value=19 Score=32.79 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=55.3
Q ss_pred ccCCCCceEEEcCCCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317 101 ARFDKPKSFAVDMKGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD 177 (269)
Q Consensus 101 ~~~~~P~giavd~~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD 177 (269)
..+..-..+++||-+.-|.+-.....|..+| ..|+ .++.|. ...-.++++++.--+| ++-
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh----------------i~~vr~vavS~rHpYl-Fs~ 211 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH----------------IETVRGVAVSKRHPYL-FSA 211 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch----------------hheeeeeeecccCceE-EEe
Confidence 4567778899998766666666666777788 4565 555554 3455799998763344 444
Q ss_pred CCCCeEEEEECCCCeEEEeccc
Q 024317 178 HGNQLIRQINLKPEDCSKSSQS 199 (269)
Q Consensus 178 ~~n~~I~~~~~~~~~~~~~~~~ 199 (269)
.....|.-++++.+.+.+....
T Consensus 212 gedk~VKCwDLe~nkvIR~YhG 233 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHG 233 (460)
T ss_pred cCCCeeEEEechhhhhHHHhcc
Confidence 4567899999988776654433
No 170
>PRK01029 tolB translocation protein TolB; Provisional
Probab=76.35 E-value=67 Score=29.95 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=41.1
Q ss_pred eEEEcCCCC-EEEEeC--CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC--CC
Q 024317 108 SFAVDMKGN-IYVADK--SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH--GN 180 (269)
Q Consensus 108 giavd~~G~-lyVaD~--~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~--~n 180 (269)
..++.++|+ |+++.. +..+|.+++.++. ..+.... ......+.+|++..|+++-. +.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~----------------~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP----------------ENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC----------------CCccceEECCCCCEEEEEECCCCC
Confidence 456778887 544432 3457888887654 3332210 01234566777556765433 34
Q ss_pred CeEEEEECCCCeEEE
Q 024317 181 QLIRQINLKPEDCSK 195 (269)
Q Consensus 181 ~~I~~~~~~~~~~~~ 195 (269)
..|+.++.+++....
T Consensus 395 ~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 395 SELYLISLITKKTRK 409 (428)
T ss_pred ceEEEEECCCCCEEE
Confidence 568888887765443
No 171
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=75.81 E-value=50 Score=28.22 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=47.1
Q ss_pred CCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC-----------CCc
Q 024317 170 ICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT-----------GRL 238 (269)
Q Consensus 170 ~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~-----------g~~ 238 (269)
+|..+++-.....|+.+++.-...+......+-.++ +.-+....+|+|+.|+|.++-+. ||.
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g-------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG-------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCC-------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 367777777777888888876655443332112221 12355778999999999987632 677
Q ss_pred cccc---ccccccccC
Q 024317 239 DPPL---QHDMEALPN 251 (269)
Q Consensus 239 ~~~~---~~~~~~~~~ 251 (269)
.|.+ .++++-++-
T Consensus 266 iq~f~phsadir~vrf 281 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRF 281 (350)
T ss_pred eeeeCCCccceeEEEe
Confidence 7766 444444443
No 172
>PTZ00420 coronin; Provisional
Probab=75.31 E-value=85 Score=30.64 Aligned_cols=72 Identities=13% Similarity=-0.014 Sum_probs=47.2
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~ 126 (269)
-..|+++|....++++-+..+.|..||+ .+++....... -.....++++++|.++++-...+.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl---~tg~~~~~i~~--------------~~~V~SlswspdG~lLat~s~D~~ 190 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDI---ENEKRAFQINM--------------PKKLSSLKWNIKGNLLSGTCVGKH 190 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEEC---CCCcEEEEEec--------------CCcEEEEEECCCCCEEEEEecCCE
Confidence 3567787655556666666788888886 23432221110 013568999999999888777789
Q ss_pred EEEEeCCcc
Q 024317 127 IRKITNLGV 135 (269)
Q Consensus 127 I~~~~~~g~ 135 (269)
|+.+|....
T Consensus 191 IrIwD~Rsg 199 (568)
T PTZ00420 191 MHIIDPRKQ 199 (568)
T ss_pred EEEEECCCC
Confidence 999996543
No 173
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=74.69 E-value=63 Score=28.85 Aligned_cols=62 Identities=13% Similarity=0.012 Sum_probs=34.0
Q ss_pred EEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEE
Q 024317 110 AVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN 187 (269)
Q Consensus 110 avd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~ 187 (269)
.+ +....||+|.. +-+..++.... .++.+.-... =.+-.||++.. +.+|++|..++.|.-.+
T Consensus 264 ~V-s~~~~Yvadga-~gl~~idisnp~spfl~ss~~t~------------g~~a~gi~ay~--~y~yiadkn~g~vV~~s 327 (370)
T COG5276 264 PV-SGEYAYVADGA-KGLPIIDISNPPSPFLSSSLDTA------------GYQAAGIRAYG--NYNYIADKNTGAVVDAS 327 (370)
T ss_pred ec-ccceeeeeccc-cCceeEeccCCCCCchhccccCC------------CccccceEEec--CeeEeccCCceEEEeCC
Confidence 55 56679999964 23333332221 3333221000 12345898764 79999998776655443
No 174
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=74.42 E-value=59 Score=28.42 Aligned_cols=140 Identities=10% Similarity=0.031 Sum_probs=75.6
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEc-CCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG-DGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g-~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
.-..++.++....++++-++...|.++|. ..++....+- .+. -.-|+..|+|+.+.+-...
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~---r~~k~~~~i~~~~e---------------ni~i~wsp~g~~~~~~~kd 127 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDI---RSGKCTARIETKGE---------------NINITWSPDGEYIAVGNKD 127 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEe---ccCcEEEEeeccCc---------------ceEEEEcCCCCEEEEecCc
Confidence 34557788888888998888888999985 3444333221 111 1224555555533333334
Q ss_pred CEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCC
Q 024317 125 HVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG 204 (269)
Q Consensus 125 ~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g 204 (269)
++|..++.......... .....-+-++..-+ +++|+...++++|..++--.-.-+..-
T Consensus 128 D~it~id~r~~~~~~~~--------------~~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsLkpv~si------- 185 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEE--------------QFKFEVNEISWNNS-NDLFFLTNGLGCVEILSYPSLKPVQSI------- 185 (313)
T ss_pred ccEEEEEecccceeehh--------------cccceeeeeeecCC-CCEEEEecCCceEEEEecccccccccc-------
Confidence 45555553221111110 11223456776644 899999999999888764321111000
Q ss_pred CcccceeeeeccceeeEEEecCCcEEEE
Q 024317 205 AVSVWVLVSVLSCLVSLVIGFVARPYII 232 (269)
Q Consensus 205 ~~~~~~~~~~l~~p~gia~d~~g~lyVa 232 (269)
.+ ..+.-.-|.+|++|+.+-+
T Consensus 186 -----~A--H~snCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 186 -----KA--HPSNCICIEFDPDGRYFAT 206 (313)
T ss_pred -----cc--CCcceEEEEECCCCceEee
Confidence 01 1234556888888876654
No 175
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=74.13 E-value=33 Score=33.19 Aligned_cols=100 Identities=16% Similarity=0.050 Sum_probs=56.8
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceE----EEEeCCCCEEEEEECCCC
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFE----LTFVPHICALLISDHGNQ 181 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~g----ia~~~~~g~LyVaD~~n~ 181 (269)
..++.|..|.+||.-.. -|...++.|. ..-.+. ..|.+ +.-|. .|++||.-. |+
T Consensus 209 ~al~~d~qg~LWVGTdq--Gv~~~e~~G~~~sn~~~-----------------~lp~~~I~ll~qD~-qG~lWiGTe-nG 267 (671)
T COG3292 209 NALIADVQGRLWVGTDQ--GVYLQEAEGWRASNWGP-----------------MLPSGNILLLVQDA-QGELWIGTE-NG 267 (671)
T ss_pred HHHHHHhcCcEEEEecc--ceEEEchhhccccccCC-----------------CCcchheeeeeccc-CCCEEEeec-cc
Confidence 45778889999998753 4666666663 111111 11222 33244 488888754 45
Q ss_pred eEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcc
Q 024317 182 LIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLD 239 (269)
Q Consensus 182 ~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~ 239 (269)
+.+-..++.......... +..++...++..|.+|.+|+.++.+-++
T Consensus 268 l~r~~l~rq~Lq~~~~~~------------~l~~S~vnsL~~D~dGsLWv~t~~giv~ 313 (671)
T COG3292 268 LWRTRLPRQGLQIPLSKM------------HLGVSTVNSLWLDTDGSLWVGTYGGIVR 313 (671)
T ss_pred ceeEecCCCCcccccccc------------CCccccccceeeccCCCEeeeccCceEE
Confidence 554444444433322211 1133556788899999999998765444
No 176
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=72.77 E-value=35 Score=30.53 Aligned_cols=110 Identities=8% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL 182 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~ 182 (269)
.-+.+.++|...|.++-...++|..||-... +...-. -........|.+.|. |..+..-+....
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-------------~qd~~~vrsiSfHPs-GefllvgTdHp~ 239 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-------------FQDTEPVRSISFHPS-GEFLLVGTDHPT 239 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH-------------hhccceeeeEeecCC-CceEEEecCCCc
Confidence 3467999999999999999999999985332 110000 001223468999998 444444455677
Q ss_pred EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317 183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD 239 (269)
Q Consensus 183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~ 239 (269)
++.++.+.-.......+..... ....-+--.+.|+|||+- .+|.+.
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht-----------~ai~~V~Ys~t~~lYvTaSkDG~Ik 286 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHT-----------GAITQVRYSSTGSLYVTASKDGAIK 286 (430)
T ss_pred eeEEeccceeEeeecCcccccc-----------cceeEEEecCCccEEEEeccCCcEE
Confidence 8888888877766655421111 223445667789999988 555544
No 177
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=72.58 E-value=20 Score=34.19 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=60.8
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR 184 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~ 184 (269)
.++.+++.++|...-+=...+.+++|+-+.+..+..... -|..-.+++.+|| |...|+-.....|.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-------------YFGGLLCvcWSPD-GKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-------------YFGGLLCVCWSPD-GKYIVTGGEDDLVT 357 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-------------hccceEEEEEcCC-ccEEEecCCcceEE
Confidence 567788888888555555567777777554311111000 0223357888998 77777777788899
Q ss_pred EEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec
Q 024317 185 QINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF 225 (269)
Q Consensus 185 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~ 225 (269)
+++.....++.-++. .-+....+|+|+
T Consensus 358 VwSf~erRVVARGqG--------------HkSWVs~VaFDp 384 (636)
T KOG2394|consen 358 VWSFEERRVVARGQG--------------HKSWVSVVAFDP 384 (636)
T ss_pred EEEeccceEEEeccc--------------cccceeeEeecc
Confidence 999888877765544 224566788885
No 178
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=71.94 E-value=93 Score=29.60 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=20.6
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecC
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFP 75 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~ 75 (269)
.-|.+. ..|.||+-|..+.++.++|..
T Consensus 279 krIvFq-~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 279 KRIVFQ-NAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred cEEEEe-cCCcEEEeCCCcCcceeeecC
Confidence 346675 578899999888888888753
No 179
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=71.90 E-value=36 Score=31.05 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=70.4
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I 127 (269)
..+-++|....|..+-...+.|..+|+. ++.-+..++ .--.+++|+..|++..||+-...+.+
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R--~~~Pl~KVi---------------~~mRTN~IswnPeafnF~~a~ED~nl 253 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLR--QASPLKKVI---------------LTMRTNTICWNPEAFNFVAANEDHNL 253 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecc--cCCccceee---------------eeccccceecCccccceeeccccccc
Confidence 3444555455555555455566666642 111111111 12367889999988899988888888
Q ss_pred EEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 128 RKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 128 ~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
..+|---. ..+.-. . .-.+.-.++.++|. |.=+|+-.....|+.|..+...-
T Consensus 254 Y~~DmR~l~~p~~v~-~------------dhvsAV~dVdfspt-G~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVH-K------------DHVSAVMDVDFSPT-GQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred eehhhhhhcccchhh-c------------ccceeEEEeccCCC-cchhccccccceEEEeecCCCcc
Confidence 88874322 111100 0 01233458999998 88899998889999998776543
No 180
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=70.48 E-value=25 Score=32.94 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=34.3
Q ss_pred CCCceEEEcCCCC-EEEEeCCCCEEEEEeCCc-c-eEEecCCC-CCCCCCC-Ccccc-ccc-cCceEEEEeCCCCEEEEE
Q 024317 104 DKPKSFAVDMKGN-IYVADKSNHVIRKITNLG-V-TTIAGGGS-KKEGRAD-GPAQN-ASF-SNDFELTFVPHICALLIS 176 (269)
Q Consensus 104 ~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g-~-~~~~g~~~-~~~~~~~-~~~~~-~~l-~~P~gia~~~~~g~LyVa 176 (269)
..+.+|.+..+++ |||+....+.|+.+|-.- . ..+.|+-. ++..... -.... ..+ ..|+-|-++-++.+|||+
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 3568999988877 999999999999999432 1 22222200 0000000 00000 112 358889999998899999
Q ss_pred EC
Q 024317 177 DH 178 (269)
Q Consensus 177 D~ 178 (269)
.+
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 86
No 181
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=70.04 E-value=8.3 Score=20.22 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=14.8
Q ss_pred cceeeEEEecCCcEEEEcC
Q 024317 216 SCLVSLVIGFVARPYIIRH 234 (269)
Q Consensus 216 ~~p~gia~d~~g~lyVad~ 234 (269)
.....|+.|++|+|||+..
T Consensus 5 n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SCEEEEEE-TTSCEEEEET
T ss_pred CeEEEEEEcCCcCEEEEeC
Confidence 4467899999999999864
No 182
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=69.46 E-value=1e+02 Score=28.98 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=65.2
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
++..+++ =+.+=||+-..|+.|-.++...+ ..+.-...-+.. +........ .+-++||+.+- .+|+.+-..+++|
T Consensus 329 sidcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~-~~~~~~~~~-~Witsla~i~~-sdL~asGS~~G~v 404 (479)
T KOG0299|consen 329 SIDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI-PELDPVNGN-FWITSLAVIPG-SDLLASGSWSGCV 404 (479)
T ss_pred CeeeEEE-ecccceeeccCCceEEEeeecccCceeEeecccccc-CCccccccc-cceeeeEeccc-CceEEecCCCCce
Confidence 5566776 35667888888888888875554 222222111100 000000111 36789999985 7899999989988
Q ss_pred EEEECCCCeE--EEecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEc
Q 024317 184 RQINLKPEDC--SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIR 233 (269)
Q Consensus 184 ~~~~~~~~~~--~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad 233 (269)
+.+....+.. ..+..- . .....++|++..+|. |+++-
T Consensus 405 rLW~i~~g~r~i~~l~~l----s---------~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 405 RLWKIEDGLRAINLLYSL----S---------LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEecCCccccceeeec----c---------cccEEEEEEEccCCCEEEEec
Confidence 8887665522 111110 0 124467889888996 66664
No 183
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=69.40 E-value=1.1e+02 Score=29.35 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=40.2
Q ss_pred eEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEc
Q 024317 162 FELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR 233 (269)
Q Consensus 162 ~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad 233 (269)
..|++++| ..|.++....+.|.++++....+++..+. ...| -.-|.+.++| +||..-
T Consensus 513 yALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqG-htDG-------------ascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 513 YALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDG-------------ASCIDISKDGTKLWTGG 570 (705)
T ss_pred hhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccC-CCCC-------------ceeEEecCCCceeecCC
Confidence 35888888 67777777778899999999887765443 1233 2346677778 777765
No 184
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=68.83 E-value=27 Score=33.14 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=49.7
Q ss_pred Cc-ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCC
Q 024317 46 NP-HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKS 123 (269)
Q Consensus 46 ~P-~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~ 123 (269)
.| .||+++|.+..|+|+-....+|+.+|.. ......+++ ...| ..+++.++|.+.++-..
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~--s~~s~~~l~----------------y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIR--SQASTDRLT----------------YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecc--cccccceee----------------ecCCcceeeecCCceEEEeecC
Confidence 45 7899999888999999889999999752 112222222 1233 34788788888787777
Q ss_pred CCEEEEEeCCc
Q 024317 124 NHVIRKITNLG 134 (269)
Q Consensus 124 n~~I~~~~~~g 134 (269)
+++|..+|-.+
T Consensus 271 ~G~~i~YD~R~ 281 (673)
T KOG4378|consen 271 KGELIAYDMRS 281 (673)
T ss_pred CceEEEEeccc
Confidence 88888777544
No 185
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=68.44 E-value=91 Score=28.07 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=41.9
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I 127 (269)
...++ .++.+|+.+. ++.|+.+|. .+|++......+. .+ -.+.+++ ++.+||... ++.+
T Consensus 59 ~~p~v--~~~~v~v~~~-~g~v~a~d~---~tG~~~W~~~~~~-----------~~--~~~p~v~-~~~v~v~~~-~g~l 117 (377)
T TIGR03300 59 LQPAV--AGGKVYAADA-DGTVVALDA---ETGKRLWRVDLDE-----------RL--SGGVGAD-GGLVFVGTE-KGEV 117 (377)
T ss_pred cceEE--ECCEEEEECC-CCeEEEEEc---cCCcEeeeecCCC-----------Cc--ccceEEc-CCEEEEEcC-CCEE
Confidence 34566 3789999885 467999973 5777655332111 01 1234553 677888765 6789
Q ss_pred EEEeC-Ccc
Q 024317 128 RKITN-LGV 135 (269)
Q Consensus 128 ~~~~~-~g~ 135 (269)
..+|. +|+
T Consensus 118 ~ald~~tG~ 126 (377)
T TIGR03300 118 IALDAEDGK 126 (377)
T ss_pred EEEECCCCc
Confidence 99996 565
No 186
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=68.22 E-value=1.3e+02 Score=29.93 Aligned_cols=114 Identities=12% Similarity=0.193 Sum_probs=70.2
Q ss_pred EEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEE
Q 024317 50 VIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRK 129 (269)
Q Consensus 50 iav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~ 129 (269)
++++ .+|...++-. +++|..+|. .++++....+. ...+..-..++++++++..++=..+.-++.
T Consensus 25 ~~~s-~nG~~L~t~~-~d~Vi~idv---~t~~~~l~s~~-----------~ed~d~ita~~l~~d~~~L~~a~rs~llrv 88 (775)
T KOG0319|consen 25 VAWS-SNGQHLYTAC-GDRVIIIDV---ATGSIALPSGS-----------NEDEDEITALALTPDEEVLVTASRSQLLRV 88 (775)
T ss_pred eeEC-CCCCEEEEec-CceEEEEEc---cCCceecccCC-----------ccchhhhheeeecCCccEEEEeeccceEEE
Confidence 7886 4666555543 677877874 56665422111 122345577999999886666555666666
Q ss_pred Ee-CCcc--eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317 130 IT-NLGV--TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGNQLIRQINLKPEDCSKS 196 (269)
Q Consensus 130 ~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~ 196 (269)
+. +.|+ ..+-... ..| -.++++|. +.|.-+-...+++++++..++..+-.
T Consensus 89 ~~L~tgk~irswKa~H----------------e~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi~~~~~th~ 142 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAIH----------------EAPVITMAFDPT-GTLLATGGADGRVKVWDIKNGYCTHS 142 (775)
T ss_pred EEcccchHhHhHhhcc----------------CCCeEEEEEcCC-CceEEeccccceEEEEEeeCCEEEEE
Confidence 66 4454 3333211 223 36888987 56666655678999999888776543
No 187
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=68.08 E-value=11 Score=35.37 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=30.5
Q ss_pred ccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 156 ASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 156 ~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
..|.-|.||.+|.+ |..|++|...+.+.+++++++
T Consensus 464 ~~fylphgl~~dkd-gf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 464 NLFYLPHGLSIDKD-GFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred CceecCCcceecCC-CcEEeecccchhhhhcccccc
Confidence 34889999999987 999999999999999887664
No 188
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.02 E-value=1.1e+02 Score=28.88 Aligned_cols=149 Identities=12% Similarity=0.022 Sum_probs=84.0
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~n 124 (269)
+-...++.|.++++.|+-+..+.|..||..... ..+..+ ..| .| ..|..=+.|.++++-.+
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el-nhg---------------~pVe~vl~lpsgs~iasAgG- 216 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL-NHG---------------CPVESVLALPSGSLIASAGG- 216 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe-cCC---------------CceeeEEEcCCCCEEEEcCC-
Confidence 445566778889999999999999999865222 222222 111 23 34555578888887655
Q ss_pred CEEEEEeCC-cceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccC
Q 024317 125 HVIRKITNL-GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSAL 203 (269)
Q Consensus 125 ~~I~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~ 203 (269)
+.|+++|-- |...+.-... .-..-++|.+..+ +.-+++-.-.+.|..|+... .....+-.
T Consensus 217 n~vkVWDl~~G~qll~~~~~-------------H~KtVTcL~l~s~-~~rLlS~sLD~~VKVfd~t~-~Kvv~s~~---- 277 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFN-------------HNKTVTCLRLASD-STRLLSGSLDRHVKVFDTTN-YKVVHSWK---- 277 (487)
T ss_pred CeEEEEEecCCceehhhhhc-------------ccceEEEEEeecC-CceEeecccccceEEEEccc-eEEEEeee----
Confidence 577777743 3222211100 0124578888876 55666666678899998433 22222211
Q ss_pred CCcccceeeeeccceeeEEEecCC-cEEEEcCCCCcccc
Q 024317 204 GAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPP 241 (269)
Q Consensus 204 g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~ 241 (269)
.......|++.+++ .+++.-.+|-+...
T Consensus 278 ----------~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 278 ----------YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ----------cccceeeEEecCCCceEEEecccceeeee
Confidence 00123456777666 55555555554444
No 189
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=67.79 E-value=1.1e+02 Score=28.77 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=46.9
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCC--CCCCCcccccccc--CceEEEEeCCCCEEEEEECC
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKE--GRADGPAQNASFS--NDFELTFVPHICALLISDHG 179 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~--~~~~~~~~~~~l~--~P~gia~~~~~g~LyVaD~~ 179 (269)
.+..+++|+.+..+++-...+.|..++-.+. ..-.+...... .........+.-+ ..++|+++-+ |.|+++-..
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D-gtlLlSGd~ 297 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD-GTLLLSGDE 297 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC-ccEEEeeCC
Confidence 4588999998885555666778887763221 00000000000 0000000011112 4578999887 788777776
Q ss_pred CCeEEEEECCCC
Q 024317 180 NQLIRQINLKPE 191 (269)
Q Consensus 180 n~~I~~~~~~~~ 191 (269)
.+.|.+++.-..
T Consensus 298 dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 298 DGKVCVWDIYSK 309 (476)
T ss_pred CCCEEEEecchH
Confidence 777888876654
No 190
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=67.68 E-value=15 Score=33.38 Aligned_cols=111 Identities=12% Similarity=0.127 Sum_probs=65.3
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
.+.+|+++| +...|++-...+.++.+|.. .-.--+.+. ....+.-.++.+.|.|.=||+-....
T Consensus 231 RTN~IswnP-eafnF~~a~ED~nlY~~DmR-~l~~p~~v~--------------~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 231 RTNTICWNP-EAFNFVAANEDHNLYTYDMR-NLSRPLNVH--------------KDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred cccceecCc-cccceeeccccccceehhhh-hhcccchhh--------------cccceeEEEeccCCCcchhccccccc
Confidence 567777776 67777777677777777531 000000011 01223446788889999999999999
Q ss_pred EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEE
Q 024317 126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN 187 (269)
Q Consensus 126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~ 187 (269)
.|+.|..+.. ..+.- ..++....++..+.| ....++-+....|+.+.
T Consensus 295 sIRIf~~~~~~SRdiYh--------------tkRMq~V~~Vk~S~D-skyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYH--------------TKRMQHVFCVKYSMD-SKYIISGSDDGNVRLWK 343 (433)
T ss_pred eEEEeecCCCcchhhhh--------------HhhhheeeEEEEecc-ccEEEecCCCcceeeee
Confidence 9999986543 22211 123666778888887 34444444333344443
No 191
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.75 E-value=66 Score=29.91 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=72.3
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK 122 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~ 122 (269)
...+.+.+..| +|.=+|+-+..+.|..+|+ +|.+..-. .+ .+-..-.+|++.++|. ++..+
T Consensus 312 ~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdl----Dgn~~~~W----~g--------vr~~~v~dlait~Dgk~vl~v~- 373 (519)
T KOG0293|consen 312 GFSVSSCAWCP-DGFRFVTGSPDRTIIMWDL----DGNILGNW----EG--------VRDPKVHDLAITYDGKYVLLVT- 373 (519)
T ss_pred CCCcceeEEcc-CCceeEecCCCCcEEEecC----Ccchhhcc----cc--------cccceeEEEEEcCCCcEEEEEe-
Confidence 35677788876 6666888877788888865 44432111 00 0112347899999998 44444
Q ss_pred CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317 123 SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED 192 (269)
Q Consensus 123 ~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~ 192 (269)
...+|+.++...+ .-+.... ..-+.+.++.+ +.+....-.++.|+.++.....
T Consensus 374 ~d~~i~l~~~e~~~dr~lise~----------------~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISEE----------------QPITSFSISKD-GKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred cccceeeechhhhhhhcccccc----------------CceeEEEEcCC-CcEEEEEcccCeeEEeecchhh
Confidence 4567888876544 2122211 12357888876 7888888888999999987543
No 192
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=66.50 E-value=9.1 Score=24.86 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=23.5
Q ss_pred ceEEEcCCCCEEEEeCC-------CCEEEEEeCCcc--eEE
Q 024317 107 KSFAVDMKGNIYVADKS-------NHVIRKITNLGV--TTI 138 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~-------n~~I~~~~~~g~--~~~ 138 (269)
.++++.++|.|+++=+. ...|.|++++|. .++
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttF 44 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTF 44 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCc
Confidence 57888899998887642 234788999997 444
No 193
>PRK04043 tolB translocation protein TolB; Provisional
Probab=65.46 E-value=1.2e+02 Score=28.29 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=34.9
Q ss_pred EEEcCCCC--EEEEeCC--CCEEEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC--CC
Q 024317 109 FAVDMKGN--IYVADKS--NHVIRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH--GN 180 (269)
Q Consensus 109 iavd~~G~--lyVaD~~--n~~I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~--~n 180 (269)
-.+.++|+ +|++... +..|++++..+ . ..+..... .. ..-.++|++..|+++-. ++
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g--------------~~--~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG--------------ML--VVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC--------------cE--EeeEECCCCCEEEEEEccCCC
Confidence 45556775 6665543 46788888643 3 44432110 00 11234666445544332 23
Q ss_pred CeEEEEECCCCeEE
Q 024317 181 QLIRQINLKPEDCS 194 (269)
Q Consensus 181 ~~I~~~~~~~~~~~ 194 (269)
..|+.++.+++...
T Consensus 257 ~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 257 PDIYLYDTNTKTLT 270 (419)
T ss_pred cEEEEEECCCCcEE
Confidence 45777776555433
No 194
>PRK04043 tolB translocation protein TolB; Provisional
Probab=65.29 E-value=1.2e+02 Score=28.27 Aligned_cols=68 Identities=10% Similarity=-0.004 Sum_probs=37.1
Q ss_pred EEcCCCC-EEEE-eC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC----
Q 024317 110 AVDMKGN-IYVA-DK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN---- 180 (269)
Q Consensus 110 avd~~G~-lyVa-D~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n---- 180 (269)
.+.++|+ |||+ |. +...|.+++.++. ..+...+. ..+ .++|++..|.++-..+
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---------------~~~---~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---------------NNS---SVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---------------cCc---eECCCCCEEEEEEcCCCccc
Confidence 5777886 4444 43 3447888887654 33332110 112 5677766664443322
Q ss_pred ----CeEEEEECCCCeEEE
Q 024317 181 ----QLIRQINLKPEDCSK 195 (269)
Q Consensus 181 ----~~I~~~~~~~~~~~~ 195 (269)
..|..++.+++....
T Consensus 345 ~~~~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRR 363 (419)
T ss_pred CCCCcEEEEEECCCCCeEE
Confidence 468888877665443
No 195
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=64.58 E-value=1.1e+02 Score=27.63 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=40.7
Q ss_pred CCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeC-C
Q 024317 55 GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN-L 133 (269)
Q Consensus 55 ~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~-~ 133 (269)
.++.+|+.. .+++|+.+|. .+|++....... + ....++.|.-.. +|.|||.+.. .++..+|. +
T Consensus 67 ~dg~v~~~~-~~G~i~A~d~---~~g~~~W~~~~~------~--~~~~~~~~~~~~---~G~i~~g~~~-g~~y~ld~~~ 130 (370)
T COG1520 67 GDGTVYVGT-RDGNIFALNP---DTGLVKWSYPLL------G--AVAQLSGPILGS---DGKIYVGSWD-GKLYALDAST 130 (370)
T ss_pred eCCeEEEec-CCCcEEEEeC---CCCcEEecccCc------C--cceeccCceEEe---CCeEEEeccc-ceEEEEECCC
Confidence 589999983 3457888873 455544211000 0 112344444333 8999999974 48999998 7
Q ss_pred cceE
Q 024317 134 GVTT 137 (269)
Q Consensus 134 g~~~ 137 (269)
|...
T Consensus 131 G~~~ 134 (370)
T COG1520 131 GTLV 134 (370)
T ss_pred CcEE
Confidence 8733
No 196
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=62.80 E-value=1.2e+02 Score=27.40 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=63.6
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCC-EEEEEECC
Q 024317 104 DKPKSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHIC-ALLISDHG 179 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g-~LyVaD~~ 179 (269)
.+-+...+.++|+-+++-...+.|.+++.... .++-..+. + ...+.+.+-|++- .+.|++.
T Consensus 349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~-----------d---~~vnsv~~~PKnpeh~iVCNr- 413 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT-----------D---YPVNSVILLPKNPEHFIVCNR- 413 (508)
T ss_pred ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC-----------c---ccceeEEEcCCCCceEEEEcC-
Confidence 34456777778887776666667777664322 22211110 0 1123444555433 3344443
Q ss_pred CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccccc
Q 024317 180 NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDPPL 242 (269)
Q Consensus 180 n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~~~ 242 (269)
.+.|+..+..|..+..+.......| .+...-+....-.--|+..|+.+|+-. ..|.+..-.
T Consensus 414 sntv~imn~qGQvVrsfsSGkREgG--dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 414 SNTVYIMNMQGQVVRSFSSGKREGG--DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred CCeEEEEeccceEEeeeccCCccCC--ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 4567777777777766654422222 221111111223346788889999887 456655443
No 197
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=62.50 E-value=44 Score=30.05 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=53.0
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCc-c---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLG-V---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN 180 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g-~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n 180 (269)
.-.+|++.++|.-+++-.+...|+.++-+- . ....- .+-.+..|+-+++.|+...+.|+-...
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-------------~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-------------QNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh-------------ccccCCCceEEEECCCcceEEEEEccC
Confidence 457899999999888888888888887432 1 11111 112367899999999988888888888
Q ss_pred CeEEEEECC
Q 024317 181 QLIRQINLK 189 (269)
Q Consensus 181 ~~I~~~~~~ 189 (269)
+.+++|...
T Consensus 155 ~~l~vyk~~ 163 (420)
T KOG2096|consen 155 NKLCVYKLV 163 (420)
T ss_pred CEEEEEEee
Confidence 888888654
No 198
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=62.39 E-value=1.3e+02 Score=27.78 Aligned_cols=74 Identities=8% Similarity=0.217 Sum_probs=53.5
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC
Q 024317 104 DKPKSFAVDMKGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN 180 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n 180 (269)
..-+.+.+.|++.++.+-.....|+..+ .+|+ .++-|. .....-++.+.| .+|+|+-...
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH----------------v~~VYqvawsaD-sRLlVS~SkD 430 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH----------------VAAVYQVAWSAD-SRLLVSGSKD 430 (480)
T ss_pred hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc----------------cceeEEEEeccC-ccEEEEcCCC
Confidence 3456799999998888778888888887 3454 333332 333467888876 7899999988
Q ss_pred CeEEEEECCCCeEE
Q 024317 181 QLIRQINLKPEDCS 194 (269)
Q Consensus 181 ~~I~~~~~~~~~~~ 194 (269)
..+.+|+...+.+.
T Consensus 431 sTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 431 STLKVWDVRTKKLK 444 (480)
T ss_pred ceEEEEEeeeeeec
Confidence 88988887766554
No 199
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=62.12 E-value=1.4e+02 Score=30.01 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=63.7
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
-++++|+|..+.+ ++-.....|..++. ++|+ .+.|.|.-. .+| .+.-+..||.|...++-..+.
T Consensus 599 lYDm~Vdp~~k~v-~t~cQDrnirif~i---~sgKq~k~FKgs~~---~eG--------~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLV-VTVCQDRNIRIFDI---ESGKQVKSFKGSRD---HEG--------DLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred EEEeeeCCCcceE-EEEecccceEEEec---cccceeeeeccccc---CCC--------ceEEEEECCCccEEEEeecCC
Confidence 3678886544443 33333455666653 5555 445544310 011 445688888886666656566
Q ss_pred EEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 126 VIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 126 ~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
.+-.+|- .|. .+..|.+ ...+|+-+.++. .=+|+-.+.++|.+|.+--
T Consensus 664 tl~~~Df~sgEcvA~m~GHs----------------E~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHS----------------EAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ceEEEEeccchhhhhhcCcc----------------hheeeeeecccc-hhheeecCCceEEEEECch
Confidence 6767773 333 3434432 224688888874 4445556678888887644
No 200
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=61.34 E-value=27 Score=31.46 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=40.9
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH 178 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~ 178 (269)
..+++-.+++||+.+...+...+++.+|. ..+.|.... ...+..|....++..+|++..|.+.-.
T Consensus 55 ~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw-------vyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 55 KYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDW-------VYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--H-------HHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred CeeEEEecCceEEEECCCCCeEEeccccceeEEcCccce-------eccccccccccceEECCCCCEEEEEEE
Confidence 34777788999999987778889988886 555554210 011123777889999998777654433
No 201
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=60.34 E-value=1.8e+02 Score=28.82 Aligned_cols=109 Identities=6% Similarity=0.045 Sum_probs=63.8
Q ss_pred CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (269)
Q Consensus 45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~ 123 (269)
.--.|+++-| +.=|++-.+.+.|..++ .+|. +....|. -++-..|....++.++|+-..
T Consensus 180 D~VRgL~vl~--~~~flScsNDg~Ir~w~----~~ge~l~~~~gh--------------tn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 180 DCVRGLAVLD--DSHFLSCSNDGSIRLWD----LDGEVLLEMHGH--------------TNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred hheeeeEEec--CCCeEeecCCceEEEEe----ccCceeeeeecc--------------ceEEEEEEecCCCCeEEEecC
Confidence 3467788743 33334444456677774 3443 4444433 233445665567789999888
Q ss_pred CCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 124 NHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 124 n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
+..++.++.+--...+..+. ..-|+..+-+ +|.|+|.-. .++||+|+.+.
T Consensus 240 DrtlriW~~~e~~q~I~lPt---------------tsiWsa~~L~-NgDIvvg~S-DG~VrVfT~~k 289 (745)
T KOG0301|consen 240 DRTLRIWKKDECVQVITLPT---------------TSIWSAKVLL-NGDIVVGGS-DGRVRVFTVDK 289 (745)
T ss_pred CceEEEeecCceEEEEecCc---------------cceEEEEEee-CCCEEEecc-CceEEEEEecc
Confidence 88888887652222221110 1234555444 488998876 47899998874
No 202
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=59.10 E-value=1.2e+02 Score=28.24 Aligned_cols=110 Identities=15% Similarity=0.248 Sum_probs=64.5
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
.-.+++++| ++..|++-++.++|..+|......- ..+.|.| ..+..+..++.--+.++-...+
T Consensus 182 aIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee--~vL~GHg--------------wdVksvdWHP~kgLiasgskDn 244 (464)
T KOG0284|consen 182 AIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEE--RVLRGHG--------------WDVKSVDWHPTKGLIASGSKDN 244 (464)
T ss_pred hhheeccCC-CCceeEEecCCCeEEEEeccCCchh--heeccCC--------------CCcceeccCCccceeEEccCCc
Confidence 456789986 8889999999999999986422222 2223332 2566778877444444444445
Q ss_pred EEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317 126 VIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK 189 (269)
Q Consensus 126 ~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~ 189 (269)
-|...|+. |. .++.+.. +...++.+.+. ++.+.+-.....++.|+..
T Consensus 245 lVKlWDprSg~cl~tlh~HK----------------ntVl~~~f~~n-~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHK----------------NTVLAVKFNPN-GNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred eeEeecCCCcchhhhhhhcc----------------ceEEEEEEcCC-CCeeEEccCCceEEEEehh
Confidence 78888864 33 3333321 22345666665 4555555555566666655
No 203
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.68 E-value=1.3e+02 Score=30.97 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=71.3
Q ss_pred Cc-ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 46 NP-HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 46 ~P-~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
.| .||++. ...-+||+-...-.|.+|+. +...-+.+..| .+.+-.-+.++++=--+++-+..
T Consensus 52 GpVRgv~FH-~~qplFVSGGDDykIkVWnY--k~rrclftL~G--------------HlDYVRt~~FHheyPWIlSASDD 114 (1202)
T KOG0292|consen 52 GPVRGVDFH-PTQPLFVSGGDDYKIKVWNY--KTRRCLFTLLG--------------HLDYVRTVFFHHEYPWILSASDD 114 (1202)
T ss_pred Cccceeeec-CCCCeEEecCCccEEEEEec--ccceehhhhcc--------------ccceeEEeeccCCCceEEEccCC
Confidence 45 889995 58899999988888998875 22222333332 34455566665544444445567
Q ss_pred CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 125 HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 125 ~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
..|++++...+ ..+.|.. .+.-+-.+.|. ..+.|+-+-...||+++..|
T Consensus 115 QTIrIWNwqsr~~iavltGHn----------------HYVMcAqFhpt-EDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 115 QTIRIWNWQSRKCIAVLTGHN----------------HYVMCAQFHPT-EDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred CeEEEEeccCCceEEEEecCc----------------eEEEeeccCCc-cceEEEecccceEEEEeecc
Confidence 78999997655 3334432 23344556665 56777777778888888766
No 204
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=58.65 E-value=1.4e+02 Score=26.92 Aligned_cols=75 Identities=9% Similarity=0.004 Sum_probs=47.5
Q ss_pred EEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317 110 AVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL 188 (269)
Q Consensus 110 avd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~ 188 (269)
.++.+|.+|+. ..+++|.-+|+++. ..+...... ....++.|.-.+ + |.||+.+... .++.++.
T Consensus 64 ~~~~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~---------~~~~~~~~~~~~---~-G~i~~g~~~g-~~y~ld~ 128 (370)
T COG1520 64 PADGDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLG---------AVAQLSGPILGS---D-GKIYVGSWDG-KLYALDA 128 (370)
T ss_pred cEeeCCeEEEe-cCCCcEEEEeCCCCcEEecccCcC---------cceeccCceEEe---C-CeEEEecccc-eEEEEEC
Confidence 46678999998 34568999998765 444332111 012355554443 4 8899998854 7899998
Q ss_pred -CCCeEEEeccc
Q 024317 189 -KPEDCSKSSQS 199 (269)
Q Consensus 189 -~~~~~~~~~~~ 199 (269)
+|..+-.....
T Consensus 129 ~~G~~~W~~~~~ 140 (370)
T COG1520 129 STGTLVWSRNVG 140 (370)
T ss_pred CCCcEEEEEecC
Confidence 56666554444
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=58.41 E-value=92 Score=30.17 Aligned_cols=118 Identities=12% Similarity=0.180 Sum_probs=74.1
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC-CCEEEEEECCCCeE
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH-ICALLISDHGNQLI 183 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~-~g~LyVaD~~n~~I 183 (269)
+.+....+|.+..+-+..-|+.++|+-.. ...+..+. ....-.+-+.|. ++.|.++-.+...|
T Consensus 54 N~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH--------------taNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 54 NCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH--------------TANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc--------------ccceeEEeeeccCCCeEEEeccCcceE
Confidence 45888889999998888889999887543 22222221 222335556664 46788888888899
Q ss_pred EEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC--cEEEEcCCCCccccc
Q 024317 184 RQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA--RPYIIRHTGRLDPPL 242 (269)
Q Consensus 184 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g--~lyVad~~g~~~~~~ 242 (269)
+.|+.+...-..- ...+.-....| .....+..-||+.+++ ..|.+..+|.++|++
T Consensus 120 ~lfdl~~~~~~~~--d~~~~~~~~~~--~cht~rVKria~~p~~PhtfwsasEDGtirQyD 176 (758)
T KOG1310|consen 120 KLFDLDSSKEGGM--DHGMEETTRCW--SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYD 176 (758)
T ss_pred EEEeccccccccc--ccCccchhhhh--hhhhhhhhheecCCCCCceEEEecCCcceeeec
Confidence 9999764321100 00011111122 1234566788998888 667777899999998
No 206
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=58.39 E-value=1.4e+02 Score=26.89 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=84.3
Q ss_pred Cc-ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcC-CCCEEEEeC
Q 024317 46 NP-HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDM-KGNIYVADK 122 (269)
Q Consensus 46 ~P-~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~-~G~lyVaD~ 122 (269)
.| .+++++ .+|+..++.+..+.|..+|+ ..|.+... -+|++| .+.-..+ +.|..|+-.
T Consensus 66 ~pi~sl~WS-~dgr~LltsS~D~si~lwDl---~~gs~l~r---------------irf~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 66 RPITSLCWS-RDGRKLLTSSRDWSIKLWDL---LKGSPLKR---------------IRFDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred cceeEEEec-CCCCEeeeecCCceeEEEec---cCCCceeE---------------EEccCccceeeeccccCCeEEEEE
Confidence 35 678886 58999999999999999986 34443322 245666 2333333 556666654
Q ss_pred CCCE--EEEEeCCcceEEecCCCCCCCCCCCcccccccc-CceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc
Q 024317 123 SNHV--IRKITNLGVTTIAGGGSKKEGRADGPAQNASFS-NDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS 199 (269)
Q Consensus 123 ~n~~--I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~-~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~ 199 (269)
.+.. +..|+. ++.++...... ..++ .|....+++. |...++-++.+.+..++.+.-.++..-.-
T Consensus 127 ~~~sp~vi~~s~-~~h~~Lp~d~d-----------~dln~sas~~~fdr~-g~yIitGtsKGkllv~~a~t~e~vas~ri 193 (405)
T KOG1273|consen 127 MEESPVVIDFSD-PKHSVLPKDDD-----------GDLNSSASHGVFDRR-GKYIITGTSKGKLLVYDAETLECVASFRI 193 (405)
T ss_pred ecCCcEEEEecC-CceeeccCCCc-----------cccccccccccccCC-CCEEEEecCcceEEEEecchheeeeeeee
Confidence 3322 222222 33222221110 1122 2444456776 56666667778888888776544332111
Q ss_pred CccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccc
Q 024317 200 GSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDP 240 (269)
Q Consensus 200 g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~ 240 (269)
. ..+...-|.+...|+.++.+..-|+.+
T Consensus 194 t-------------s~~~IK~I~~s~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 194 T-------------SVQAIKQIIVSRKGRFLIINTSDRVIR 221 (405)
T ss_pred c-------------hheeeeEEEEeccCcEEEEecCCceEE
Confidence 0 123455688888898888886656553
No 207
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=58.25 E-value=1.4e+02 Score=26.89 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=46.4
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccce-eeeeccc-eeeEEEecCCcEEEEcCCC
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWV-LVSVLSC-LVSLVIGFVARPYIIRHTG 236 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~l~~-p~gia~d~~g~lyVad~~g 236 (269)
...+...+.++ |+-.++-...+.|.+++.....+.....+. +..-..+ ..+.... +.=|.......+||-+..|
T Consensus 349 Syvn~a~ft~d-G~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 349 SYVNEATFTDD-GHHIISASSDGTVKVWHGKTTECLSTFKPL---GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccccceEEcCC-CCeEEEecCCccEEEecCcchhhhhhccCC---CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 34566777877 666666666788888886655443322221 1111101 1112233 4556666667999999888
Q ss_pred Cccccc
Q 024317 237 RLDPPL 242 (269)
Q Consensus 237 ~~~~~~ 242 (269)
++....
T Consensus 425 QvVrsf 430 (508)
T KOG0275|consen 425 QVVRSF 430 (508)
T ss_pred eEEeee
Confidence 887666
No 208
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.40 E-value=1.8e+02 Score=27.22 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=18.3
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl 74 (269)
-.-+++++...+.+++.+..++++-+|.
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeec
Confidence 4456666666666666666777777765
No 209
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=54.85 E-value=1.8e+02 Score=27.07 Aligned_cols=73 Identities=10% Similarity=0.184 Sum_probs=48.4
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
.-.++++.+++..|++-...++|++.|. ... ..+.|.+ .-+..+.-.|..+.|.+. ...+
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg----------------wdVksvdWHP~kgLiasg-skDn 244 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG----------------WDVKSVDWHPTKGLIASG-SKDN 244 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC----------------CCcceeccCCccceeEEc-cCCc
Confidence 4578999999999999999999998883 233 4444432 235667777774444443 3344
Q ss_pred eEEEEECCCCeEE
Q 024317 182 LIRQINLKPEDCS 194 (269)
Q Consensus 182 ~I~~~~~~~~~~~ 194 (269)
.|..+++..+...
T Consensus 245 lVKlWDprSg~cl 257 (464)
T KOG0284|consen 245 LVKLWDPRSGSCL 257 (464)
T ss_pred eeEeecCCCcchh
Confidence 7777777665443
No 210
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=54.47 E-value=1.4e+02 Score=25.77 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=31.3
Q ss_pred cccCCCC-ceEEEcCCCCEEEEeCCCCEEEEEeCC-cc--eEEecC
Q 024317 100 SARFDKP-KSFAVDMKGNIYVADKSNHVIRKITNL-GV--TTIAGG 141 (269)
Q Consensus 100 ~~~~~~P-~giavd~~G~lyVaD~~n~~I~~~~~~-g~--~~~~g~ 141 (269)
...|..| +.+.+.++|+--.+-..+..++.+|++ |+ ..+.|.
T Consensus 179 sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 179 SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 3456667 679999999988888888999999964 44 445554
No 211
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.39 E-value=2.5e+02 Score=29.06 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=29.0
Q ss_pred ccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc
Q 024317 101 ARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV 135 (269)
Q Consensus 101 ~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~ 135 (269)
..++.-.++.+++.-+++++......|+++|-+.+
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 35677788999999999999999888998886554
No 212
>PRK13684 Ycf48-like protein; Provisional
Probab=54.25 E-value=1.6e+02 Score=26.33 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=19.0
Q ss_pred ecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEE
Q 024317 27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYT 71 (269)
Q Consensus 27 ~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~ 71 (269)
..+++..|+....+. -....+|++. ++.+.|++-. ...|++
T Consensus 30 ~~~~~~~W~~~~~~~--~~~l~~v~F~-d~~~g~avG~-~G~il~ 70 (334)
T PRK13684 30 PMLSSSPWQVIDLPT--EANLLDIAFT-DPNHGWLVGS-NRTLLE 70 (334)
T ss_pred ccccCCCcEEEecCC--CCceEEEEEe-CCCcEEEEEC-CCEEEE
Confidence 344555676654221 2245667664 3444443322 344444
No 213
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=54.05 E-value=1.2e+02 Score=30.41 Aligned_cols=106 Identities=12% Similarity=0.229 Sum_probs=56.0
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC-CCCe
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH-GNQL 182 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~-~n~~ 182 (269)
.+|++|+.-.+.++-.....|++|+ ..|+ +++-|..... ..|--+.+||. | +|++-. .+..
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e-------------G~lIKv~lDPS-g-iY~atScsdkt 664 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE-------------GDLIKVILDPS-G-IYLATSCSDKT 664 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC-------------CceEEEEECCC-c-cEEEEeecCCc
Confidence 5799998777666665566788887 4565 5555542211 22445666665 3 444433 3334
Q ss_pred EEEEECCCCeEEEecccCccCCCcccceeee--eccceeeEEEecCCcEEEEc
Q 024317 183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVS--VLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~--~l~~p~gia~d~~g~lyVad 233 (269)
+-.++--.+.+...-. |.+.. .+|. .-.+-+=|.+..||=|||=.
T Consensus 665 l~~~Df~sgEcvA~m~-----GHsE~-VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 665 LCFVDFVSGECVAQMT-----GHSEA-VTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eEEEEeccchhhhhhc-----Ccchh-eeeeeecccchhheeecCCceEEEEE
Confidence 5555544433322111 11111 1121 22556678888888888754
No 214
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=53.37 E-value=1.8e+02 Score=26.42 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=21.6
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl 74 (269)
...-+.+++++++..||..+ +++|..+|.
T Consensus 158 ~taAhsL~Fs~DGeqlfaGy--krcirvFdt 186 (406)
T KOG2919|consen 158 YTAAHSLQFSPDGEQLFAGY--KRCIRVFDT 186 (406)
T ss_pred hhhheeEEecCCCCeEeecc--cceEEEeec
Confidence 34567899987666676665 788999986
No 215
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=53.32 E-value=53 Score=27.71 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=34.3
Q ss_pred CcchhhHHHHHHHHHHHhhhh-hccceecCCCcE-EEE--EecCcc-------CCCCcceEEEecCCCeEEEEeCC
Q 024317 1 MASHFVYSSLAITLLSLLFSL-VSSGLLLEDGYT-VTT--VIDGHQ-------LEINPHSVIDRPGSSDLIVLDSS 65 (269)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~g~~-~~~--~~~g~~-------~~~~P~giav~~~~g~lyV~D~~ 65 (269)
|++.+++.+++.++.|++++. .++...+.||.. +.. +.++.. -+..|--+.+ .+|..||.=+-
T Consensus 1 mk~~~~~~~~~~~~~f~~~~~~~~~~~~L~DGtYsV~fkVlK~~tde~Smmn~Y~~kPAkv~V--knGK~~Vt~Tl 74 (217)
T TIGR03656 1 MKKILVFAFFTTILAFIILSAGFSNSANLADGTYTINYTVYKADNDSASMANDYFEKPAKLIV--KNGKMTVQITV 74 (217)
T ss_pred CcchhhHHHHHHHHHHhcccccccccccccCceEEEEEEEEeCCCCchhhHHhhccCCcEEEE--ECCEEEEEEEE
Confidence 777776534333333333322 333557888843 322 223322 3557888888 47877777543
No 216
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=52.58 E-value=1.1e+02 Score=29.06 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=30.7
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG 89 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g 89 (269)
+-.+|.+++.++.|+|+....+.|+++| ..++++..+.|..
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id---~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKID---YRTGKIKWILGPP 312 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE----TTS-EEEEES-S
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEE---CCCCcEEEEeCCC
Confidence 4567888777899999999889999997 3788999888864
No 217
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.91 E-value=2.1e+02 Score=26.90 Aligned_cols=109 Identities=11% Similarity=0.016 Sum_probs=61.2
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~ 126 (269)
-+..++. .+|.||.+-..+..|..||+. +++ .+..|.|. -.--..|.+..+|...++-.....
T Consensus 350 ~ts~~fH-pDgLifgtgt~d~~vkiwdlk-s~~-~~a~Fpgh--------------t~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 350 YTSAAFH-PDGLIFGTGTPDGVVKIWDLK-SQT-NVAKFPGH--------------TGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred eEEeeEc-CCceEEeccCCCceEEEEEcC-Ccc-ccccCCCC--------------CCceeEEEeccCceEEEEEecCCe
Confidence 3455664 478888888888888888763 122 33333221 012256889777876666666666
Q ss_pred EEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317 127 IRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL 188 (269)
Q Consensus 127 I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~ 188 (269)
|..+|-... .++.-. .+...+.+.+|..+.+|-++ ...=+|+.+..
T Consensus 413 V~lwDLRKl~n~kt~~l~---------------~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k 461 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQLD---------------EKKEVNSLSFDQSGTYLGIA-GSDLQVYICKK 461 (506)
T ss_pred EEEEEehhhcccceeecc---------------ccccceeEEEcCCCCeEEee-cceeEEEEEec
Confidence 888884322 333221 12345678888874444444 33334555553
No 218
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=51.88 E-value=1.7e+02 Score=25.80 Aligned_cols=114 Identities=9% Similarity=0.043 Sum_probs=67.2
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEE-eCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317 108 SFAVDMKGNIYVADKSNHVIRKI-TNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR 184 (269)
Q Consensus 108 giavd~~G~lyVaD~~n~~I~~~-~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~ 184 (269)
-|-...+|+|.|+-.......++ ..+|. -++.|.. ...+.+.++.+ ....++-...+.++
T Consensus 15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt----------------GavW~~Did~~-s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT----------------GAVWCCDIDWD-SKHLITGSADQTAK 77 (327)
T ss_pred eEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC----------------ceEEEEEecCC-cceeeeccccceeE
Confidence 36666788877776655544433 33564 3444431 23578888876 67778888888888
Q ss_pred EEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcccccccccccccCCC
Q 024317 185 QINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPLQHDMEALPNQS 253 (269)
Q Consensus 185 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~~~~~~~~~~~~ 253 (269)
.++...+........+ +....+-++..|++.++..+.++-.....-+..+++.+
T Consensus 78 LWDv~tGk~la~~k~~---------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTN---------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred EEEcCCCcEEEEeecC---------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 8887655544332221 23456777778877666655444444434444444444
No 219
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=51.57 E-value=1.7e+02 Score=25.70 Aligned_cols=27 Identities=0% Similarity=0.149 Sum_probs=22.3
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEe
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKIT 131 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~ 131 (269)
.-+-++...++++||...++++|..+.
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILs 175 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILS 175 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEe
Confidence 345688877888999999999998887
No 220
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.84 E-value=1.8e+02 Score=25.92 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=53.4
Q ss_pred CceEEEcC-CCC-EEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-
Q 024317 106 PKSFAVDM-KGN-IYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG- 179 (269)
Q Consensus 106 P~giavd~-~G~-lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~- 179 (269)
-.||++++ ... ++|+-.-..--..||+++. .++....... | +=+|+ +++++..||-++.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH------------f-yGHGv-fs~dG~~LYATEndf 135 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH------------F-YGHGV-FSPDGRLLYATENDF 135 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce------------e-ecccc-cCCCCcEEEeecCCC
Confidence 35666665 222 6666654445566777664 3333222111 2 22455 47886678887653
Q ss_pred ---CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317 180 ---NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 180 ---n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
-+.|=+++.+..+....-.+.++ -.|+-+.+-.||++.|.-+.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~G-------------iGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHG-------------IGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred CCCCceEEEEecccccceecccccCC-------------cCcceeEEecCCcEEEEeCC
Confidence 23455555443322221112112 33777888888977666543
No 221
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=50.74 E-value=43 Score=18.84 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEe
Q 024317 104 DKPKSFAVDMKGNIYVADKSNHVIRKIT 131 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~n~~I~~~~ 131 (269)
....+|+++++++.+++=...+.|+.+|
T Consensus 12 ~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3557899999988877777788888775
No 222
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=49.81 E-value=2.4e+02 Score=26.97 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=8.4
Q ss_pred EEEEEECCCCeEEEEE
Q 024317 172 ALLISDHGNQLIRQIN 187 (269)
Q Consensus 172 ~LyVaD~~n~~I~~~~ 187 (269)
+|-+.|..++.|..++
T Consensus 470 ~Iklydm~~~Kiy~vT 485 (668)
T COG4946 470 SIKLYDMDGGKIYDVT 485 (668)
T ss_pred eEEEEecCCCeEEEec
Confidence 4455555555555544
No 223
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=49.79 E-value=1.9e+02 Score=25.88 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=34.4
Q ss_pred ceEEEcCCCC-EEEEeCCCCEEEEEe-CCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 107 KSFAVDMKGN-IYVADKSNHVIRKIT-NLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 107 ~giavd~~G~-lyVaD~~n~~I~~~~-~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
.++.+ .|+ .||+|..+ -...+| .+-. ..++|+..... ..-+.++++. +.-||++..++
T Consensus 132 ygv~v--sGn~aYVadldd-gfLivdvsdpssP~lagrya~~~------------~d~~~v~ISG--n~AYvA~~d~G 192 (370)
T COG5276 132 YGVYV--SGNYAYVADLDD-GFLIVDVSDPSSPQLAGRYALPG------------GDTHDVAISG--NYAYVAWRDGG 192 (370)
T ss_pred EEEEe--cCCEEEEeeccC-cEEEEECCCCCCceeeeeeccCC------------CCceeEEEec--CeEEEEEeCCC
Confidence 45666 566 99999744 344455 3333 66666543210 0115788875 58899988765
No 224
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=49.50 E-value=2.1e+02 Score=26.31 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=70.3
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
.-..|.++ +.+.+|=+.+ .|.|.++|+ ...+.+.+..+.- .-..|...+.-+|..+-....
T Consensus 262 ~Vs~V~w~-d~~v~yS~Sw-DHTIk~WDl--etg~~~~~~~~~k---------------sl~~i~~~~~~~Ll~~gssdr 322 (423)
T KOG0313|consen 262 PVSSVVWS-DATVIYSVSW-DHTIKVWDL--ETGGLKSTLTTNK---------------SLNCISYSPLSKLLASGSSDR 322 (423)
T ss_pred ceeeEEEc-CCCceEeecc-cceEEEEEe--ecccceeeeecCc---------------ceeEeecccccceeeecCCCC
Confidence 34667775 4677777665 689999997 3344455544321 224567767777888877777
Q ss_pred EEEEEeCC---cc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 126 VIRKITNL---GV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 126 ~I~~~~~~---g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
.|+.+||. |. .++.|.. +...++--+|.+.+++++-...+.+..++.+..
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~----------------nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHK----------------NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred ceeecCCCCCCCceeEEeeecch----------------hhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 78888863 33 3334431 234556667776777777777777777776543
No 225
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=49.20 E-value=1.5e+02 Score=26.28 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=15.8
Q ss_pred CCCeEEEEeCCCCEEEEEecCCCCCccEEEE
Q 024317 55 GSSDLIVLDSSRSAFYTLSFPLSEESVVKRL 85 (269)
Q Consensus 55 ~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~ 85 (269)
..+++|-....-+.+-.+.+ .++-++..+
T Consensus 40 ~p~~V~~V~~~~G~~T~I~f--~~gE~I~~v 68 (292)
T PRK13861 40 NPDQVVRLSTAVGATLVVTF--GANETVTAV 68 (292)
T ss_pred CCCCEEEEEEECCcEEEEEE--CCCCEEEEe
Confidence 35666666665555555544 445555544
No 226
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=49.05 E-value=1.5e+02 Score=24.29 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=9.6
Q ss_pred eecCCCcEEEEEecCcc
Q 024317 26 LLLEDGYTVTTVIDGHQ 42 (269)
Q Consensus 26 ~~~~~g~~~~~~~~g~~ 42 (269)
.++.+|..+..+.+|..
T Consensus 4 ~~~~dG~~~i~f~NGt~ 20 (179)
T PF07202_consen 4 RVYSDGRRVITFPNGTK 20 (179)
T ss_pred EEeCCCCEEEEECCCCE
Confidence 35566666666555443
No 227
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=48.91 E-value=2.4e+02 Score=26.66 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=13.1
Q ss_pred CCC-EEEEeCCCCEEEEEeCCc
Q 024317 114 KGN-IYVADKSNHVIRKITNLG 134 (269)
Q Consensus 114 ~G~-lyVaD~~n~~I~~~~~~g 134 (269)
+|+ |||+ .++++..+++.-
T Consensus 110 dG~~iy~s--~~~KvYvi~~~p 129 (603)
T COG4880 110 DGERIYVS--VNGKVYVIDKNP 129 (603)
T ss_pred CCcEEEEE--eCCeEEEEcCCC
Confidence 455 8887 367888887654
No 228
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=48.77 E-value=1.1e+02 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=17.0
Q ss_pred CCceEEEcCCCCEEEEeCCCCEE
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I 127 (269)
.+.-+.++.+|+|++.|..+..|
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~~v 77 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGTVV 77 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCcEE
Confidence 45668888899999998754433
No 229
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=48.57 E-value=1.1e+02 Score=22.54 Aligned_cols=55 Identities=16% Similarity=0.355 Sum_probs=33.5
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
.+.-+.++.+|+|++.|..+..|+.=+.. . -..+.-+.+.++ |+|.+.|..+..|
T Consensus 54 ~~~~l~l~~dGnLvl~~~~g~~vW~S~t~------~-----------------~~~~~~~~L~dd-Gnlvl~~~~~~~~ 108 (114)
T smart00108 54 DSCTLTLQSDGNLVLYDGDGRVVWSSNTT------G-----------------ANGNYVLVLLDD-GNLVIYDSDGNFL 108 (114)
T ss_pred CCEEEEEeCCCCEEEEeCCCCEEEEeccc------C-----------------CCCceEEEEeCC-CCEEEECCCCCEE
Confidence 34668888899999988754444321110 0 022445677766 8898888755433
No 230
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=48.26 E-value=1.7e+02 Score=29.75 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=23.8
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCCcc
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNLGV 135 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~g~ 135 (269)
..+|.+.+|.|-|+.. .+.||.|+..|+
T Consensus 581 s~~aTt~~G~iavgs~-~G~IRLyd~~g~ 608 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSN-KGDIRLYDRLGK 608 (794)
T ss_pred eEEEecCCceEEEEeC-CCcEEeecccch
Confidence 4688889999999875 689999998876
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=45.75 E-value=2.3e+02 Score=25.52 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=48.8
Q ss_pred ccCCCCceEEEcCCCCEEEEeCCCCE-EEEEeC-CcceEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317 101 ARFDKPKSFAVDMKGNIYVADKSNHV-IRKITN-LGVTTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD 177 (269)
Q Consensus 101 ~~~~~P~giavd~~G~lyVaD~~n~~-I~~~~~-~g~~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD 177 (269)
+.-+.-..|++..+|.+.-+-+.++. ||.||. +|.... .-+|.. =..-..|+++|+ ...+.+-
T Consensus 179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-------------~A~iy~iaFSp~-~s~Lavs 244 (346)
T KOG2111|consen 179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-------------RADIYCIAFSPN-SSWLAVS 244 (346)
T ss_pred cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-------------hheEEEEEeCCC-ccEEEEE
Confidence 33444466888889998877776666 667774 454111 111111 122468999997 5555555
Q ss_pred CCCCeEEEEECCCCe
Q 024317 178 HGNQLIRQINLKPED 192 (269)
Q Consensus 178 ~~n~~I~~~~~~~~~ 192 (269)
...+.|..|.+.+..
T Consensus 245 SdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 245 SDKGTLHIFSLRDTE 259 (346)
T ss_pred cCCCeEEEEEeecCC
Confidence 667889999887744
No 232
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=45.62 E-value=2.3e+02 Score=25.64 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=45.3
Q ss_pred cCCCCceEEEcCCCCEEEEeCCCCEEEEEeC--Ccc-----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEE
Q 024317 102 RFDKPKSFAVDMKGNIYVADKSNHVIRKITN--LGV-----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALL 174 (269)
Q Consensus 102 ~~~~P~giavd~~G~lyVaD~~n~~I~~~~~--~g~-----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~Ly 174 (269)
.+.....+++.++|.-.+|-+ +++|++|+. -|+ .++.- +. ..+-.--+.++++|.+-..+
T Consensus 157 e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~-~k-----------~gq~giisc~a~sP~~~~~~ 223 (406)
T KOG2919|consen 157 EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK-GK-----------FGQKGIISCFAFSPMDSKTL 223 (406)
T ss_pred hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc-cc-----------ccccceeeeeeccCCCCcce
Confidence 355667899999999777665 679999984 343 11111 10 01112245677777644456
Q ss_pred EEECCCCeEEEEECCCC
Q 024317 175 ISDHGNQLIRQINLKPE 191 (269)
Q Consensus 175 VaD~~n~~I~~~~~~~~ 191 (269)
-.-...+++=.+..++.
T Consensus 224 a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 224 AVGSYGQRVGIYNDDGR 240 (406)
T ss_pred eeecccceeeeEecCCC
Confidence 55555566655555543
No 233
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=45.58 E-value=2e+02 Score=24.72 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=37.6
Q ss_pred CceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317 106 PKSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL 182 (269)
Q Consensus 106 P~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~ 182 (269)
-..+++|+.|+|.++-.....-..+|-.|. ..+-.. -.....+-++|. -.-..+-.....
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph----------------sadir~vrfsp~-a~yllt~syd~~ 296 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH----------------SADIRCVRFSPG-AHYLLTCSYDMK 296 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC----------------ccceeEEEeCCC-ceEEEEecccce
Confidence 467999999999998765444445553332 111111 011245666664 333344445556
Q ss_pred EEEEECCCC
Q 024317 183 IRQINLKPE 191 (269)
Q Consensus 183 I~~~~~~~~ 191 (269)
|+.-++.|.
T Consensus 297 ikltdlqgd 305 (350)
T KOG0641|consen 297 IKLTDLQGD 305 (350)
T ss_pred EEEeecccc
Confidence 666666554
No 234
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=44.94 E-value=1.1e+02 Score=26.65 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=31.0
Q ss_pred ccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317 158 FSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS 197 (269)
Q Consensus 158 l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~ 197 (269)
+...+.+.++|+++.|+.|- +.+.++.++.+.+...+..
T Consensus 114 vPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred CCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEE
Confidence 34458899999988998887 7789999999887666543
No 235
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.51 E-value=4.2e+02 Score=28.19 Aligned_cols=112 Identities=10% Similarity=-0.028 Sum_probs=60.8
Q ss_pred eEEEc---CCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317 108 SFAVD---MKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR 184 (269)
Q Consensus 108 giavd---~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~ 184 (269)
++.+| -.|.|+++-- ...|++.|.+.+..+..-+... =..++.+.-+-..|+++++-...++|+
T Consensus 1168 ~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s------------~t~vTaLS~~~~~gn~i~AGfaDGsvR 1234 (1387)
T KOG1517|consen 1168 GLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGS------------STLVTALSADLVHGNIIAAGFADGSVR 1234 (1387)
T ss_pred CeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCC------------CccceeecccccCCceEEEeecCCceE
Confidence 45555 3677777643 4567777766553333322110 123566666666689999999999999
Q ss_pred EEECCCCeE---EEecccCccCCCcccceeeeeccc-eee--EEEecCCcEEEEcCCC
Q 024317 185 QINLKPEDC---SKSSQSGSALGAVSVWVLVSVLSC-LVS--LVIGFVARPYIIRHTG 236 (269)
Q Consensus 185 ~~~~~~~~~---~~~~~~g~~~g~~~~~~~~~~l~~-p~g--ia~d~~g~lyVad~~g 236 (269)
.|+.+-... +..... ...... ..++.+.. +.+ +....+|.+++.|-..
T Consensus 1235 vyD~R~a~~ds~v~~~R~---h~~~~~-Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1235 VYDRRMAPPDSLVCVYRE---HNDVEP-IVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred EeecccCCccccceeecc---cCCccc-ceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 999764321 111111 111100 12222222 222 5667788899988543
No 236
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=44.48 E-value=1.4e+02 Score=27.18 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=63.9
Q ss_pred CCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCCCEEEEEeC-
Q 024317 55 GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSNHVIRKITN- 132 (269)
Q Consensus 55 ~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n~~I~~~~~- 132 (269)
-++.+.|+-++...|..++ ..++.+...... +-.|||.-- +|.+.|+-+..+.|+.++.
T Consensus 328 fd~kyIVsASgDRTikvW~---~st~efvRtl~g----------------HkRGIAClQYr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 328 FDDKYIVSASGDRTIKVWS---TSTCEFVRTLNG----------------HKRGIACLQYRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred cccceEEEecCCceEEEEe---ccceeeehhhhc----------------ccccceehhccCeEEEecCCCceEEEEecc
Confidence 3556777777788888886 345554443211 346777754 7889999999999999994
Q ss_pred Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 133 LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 133 ~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
.|. ..+-|... | ...|-++. .-.|+-...+.|++++....
T Consensus 389 ~G~cLRvLeGHEe--------------L--vRciRFd~---krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 389 CGACLRVLEGHEE--------------L--VRCIRFDN---KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ccHHHHHHhchHH--------------h--hhheeecC---ceeeeccccceEEEEecccc
Confidence 454 33333211 1 23577654 35677777888999887654
No 237
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=42.94 E-value=1.9e+02 Score=29.87 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=51.2
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~ 126 (269)
-.+++++| ++.+.++-+..+.|..++.. .-..++++. .....+.|+++||-|..+-+-...+.
T Consensus 132 V~Dv~Wsp-~~~~lvS~s~DnsViiwn~~--tF~~~~vl~--------------~H~s~VKGvs~DP~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 132 VLDVNWSP-DDSLLVSVSLDNSVIIWNAK--TFELLKVLR--------------GHQSLVKGVSWDPIGKYFASQSDDRT 194 (942)
T ss_pred cceeccCC-CccEEEEecccceEEEEccc--cceeeeeee--------------cccccccceEECCccCeeeeecCCce
Confidence 34567765 78888888888888888641 122233333 23457899999999998887777777
Q ss_pred EEEEe--CCcc-eEEec
Q 024317 127 IRKIT--NLGV-TTIAG 140 (269)
Q Consensus 127 I~~~~--~~g~-~~~~g 140 (269)
|.++. ..|. .++.+
T Consensus 195 ikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 195 LKVWRTSDWGIEKSITK 211 (942)
T ss_pred EEEEEcccceeeEeecc
Confidence 76665 3344 55544
No 238
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=42.93 E-value=1.4e+02 Score=25.80 Aligned_cols=69 Identities=9% Similarity=-0.015 Sum_probs=35.4
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC-ccCCCcccceeeeecc-ceeeEEEecCCcEEEE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG-SALGAVSVWVLVSVLS-CLVSLVIGFVARPYII 232 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~l~-~p~gia~d~~g~lyVa 232 (269)
..|.++|+..+ |.+-|... ++. ..++.+|.+..-....- ...|. .... .+.+. ....+.++++|.|++.
T Consensus 90 g~~lD~AI~G~-GfF~V~~~-~G~-~~yTR~G~F~~d~~G~Lvt~~G~-~Vl~-pI~vp~~~~~~~I~~dG~I~~~ 160 (260)
T PRK12694 90 GNSKDVAINGQ-GFFQVLMP-DGT-TAYTRDGSFQTNAQGQLVTSSGY-PLQP-AITIPQNATSLTIGKDGTVSVT 160 (260)
T ss_pred CCcceEEEcCC-cEEEEEcC-CCC-eEEeeCCCceECCCCCEECCCCC-Eecc-ceecCCCcceeEECCCCeEEEe
Confidence 46889999875 66555544 342 22666666553311100 01111 1100 12222 1147999999999874
No 239
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=42.28 E-value=2.6e+02 Score=25.25 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=46.6
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~ 126 (269)
...+.++ .-|.+.-+-..|++|..+|+. .-+ +..+. .+...--+.++..++|+..++-+..+.
T Consensus 26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~--T~~-iar~l-------------saH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFS-RWGDYLAVGCANGRVVIYDFD--TFR-IARML-------------SAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEec-cCcceeeeeccCCcEEEEEcc--ccc-hhhhh-------------hccccceeEEEecCCCCEeeeecCCce
Confidence 3455565 356666667788999999863 222 11111 122223378999999999999988888
Q ss_pred EEEEe-CCcc
Q 024317 127 IRKIT-NLGV 135 (269)
Q Consensus 127 I~~~~-~~g~ 135 (269)
|..+| .+|.
T Consensus 89 i~lwDl~~gs 98 (405)
T KOG1273|consen 89 IKLWDLLKGS 98 (405)
T ss_pred eEEEeccCCC
Confidence 88888 3443
No 240
>PRK01029 tolB translocation protein TolB; Provisional
Probab=41.81 E-value=2.9e+02 Score=25.66 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=40.9
Q ss_pred ceEEEcCCCC--EEEEeC-CCCEEEEEeCC--cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC-
Q 024317 107 KSFAVDMKGN--IYVADK-SNHVIRKITNL--GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH- 178 (269)
Q Consensus 107 ~giavd~~G~--lyVaD~-~n~~I~~~~~~--g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~- 178 (269)
...++.++|. +|++|. +..+|++++.+ +. ..+.... ......+++|++..|+++..
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~----------------~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY----------------RNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC----------------CCccceeECCCCCEEEEEEcC
Confidence 3468888987 444553 33467777643 22 2222211 11234567888666765543
Q ss_pred -CCCeEEEEECCCCeEEEe
Q 024317 179 -GNQLIRQINLKPEDCSKS 196 (269)
Q Consensus 179 -~n~~I~~~~~~~~~~~~~ 196 (269)
+..+|++++..++.....
T Consensus 348 ~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQL 366 (428)
T ss_pred CCCcEEEEEECCCCCeEEc
Confidence 235788888877655443
No 241
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=41.52 E-value=3.3e+02 Score=26.21 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEE
Q 024317 28 LEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTL 72 (269)
Q Consensus 28 ~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~ 72 (269)
+.+++..+..+.+. .-.|+|..| ..+.|++-.....+..+
T Consensus 356 ~~~~f~~~v~gh~d----elwgla~hp-s~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 356 LENGFTLTVQGHGD----ELWGLATHP-SKNQLLTCGQDKHVRLW 395 (626)
T ss_pred ecCCceEEEEeccc----ceeeEEcCC-ChhheeeccCcceEEEc
Confidence 34455555554443 467888864 67777777655666665
No 242
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=40.73 E-value=3.8e+02 Score=26.70 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=35.9
Q ss_pred CCCEEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317 123 SNHVIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS 194 (269)
Q Consensus 123 ~n~~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~ 194 (269)
++-.|..+|- ++. ..+.|.. ...-+||.+|+ |++..+---.++|+++++.....-
T Consensus 698 yd~Ti~lWDl~~~~~~~~l~gHt----------------dqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRLVGHT----------------DQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceeeeeehhhhhhhheeccCc----------------CceeEEEECCC-CcceeeeecCceEEEeCCCCCCCc
Confidence 4667777773 333 4555442 23458999998 777655556789999988765443
No 243
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.54 E-value=4.1e+02 Score=26.95 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=54.1
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
+-..+-+-|+..+|++-...+.|..+|.+.- ..+-+. ....+.+|+.|. |...|+-....
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H----------------~~ev~cLav~~~-G~~vvs~shD~ 656 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH----------------HSEVWCLAVSPN-GSFVVSSSHDK 656 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc----------------hheeeeeEEcCC-CCeEEeccCCc
Confidence 3355777788889998887788888775442 233222 445689999997 88888888778
Q ss_pred eEEEEECCCCeEEEe
Q 024317 182 LIRQINLKPEDCSKS 196 (269)
Q Consensus 182 ~I~~~~~~~~~~~~~ 196 (269)
.|+.|......+.+.
T Consensus 657 sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 657 SIRLWERTDEILILE 671 (888)
T ss_pred eeEeeeccCcceeee
Confidence 899998887766554
No 244
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=39.91 E-value=2.3e+02 Score=25.85 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=48.0
Q ss_pred CCCcceEEEecCCCeEEEEeCCCC-----EEEEEecCCCCCccEEEEEcCCc---ccCCCCCcccccCCCCceEEEcCCC
Q 024317 44 EINPHSVIDRPGSSDLIVLDSSRS-----AFYTLSFPLSEESVVKRLAGDGV---QGYSDGEPGSARFDKPKSFAVDMKG 115 (269)
Q Consensus 44 ~~~P~giav~~~~g~lyV~D~~~~-----~I~~~dl~~~~~g~~~~~~g~g~---~g~~dg~~~~~~~~~P~giavd~~G 115 (269)
...|+.++.- .+|++|++.-..+ +|+-|+ +++....+++.... +|.+ .+--.-..+.+|.+|
T Consensus 182 GTf~yNmgAl-~nGH~Y~asLSG~~~SPLKiY~w~---tPts~PevIa~inV~~I~gAg------~RhGDn~S~nlD~nG 251 (442)
T PF15416_consen 182 GTFSYNMGAL-VNGHSYLASLSGGKASPLKIYYWE---TPTSAPEVIADINVGDIPGAG------NRHGDNFSLNLDENG 251 (442)
T ss_pred cccccchhhh-cCCeEEEEeccCCCCCceEEEEec---CCCCCceEEEeeeeccCcccc------cccCcceeEEeccCC
Confidence 3356666652 6899999975332 577776 45555555543211 1111 011122357888877
Q ss_pred C--EEEEeCCCCEEEEEeCC
Q 024317 116 N--IYVADKSNHVIRKITNL 133 (269)
Q Consensus 116 ~--lyVaD~~n~~I~~~~~~ 133 (269)
+ +||.|.....|.|++-.
T Consensus 252 nGyiFFgdnaat~ilR~~vs 271 (442)
T PF15416_consen 252 NGYIFFGDNAATNILRFTVS 271 (442)
T ss_pred ceEEEecCCccceEEEEEcc
Confidence 7 99999877888888743
No 245
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=39.54 E-value=1.2e+02 Score=26.18 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=34.4
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc-----cC-ccCCCcccceeeeeccc-eeeEEEecCCcEEE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ-----SG-SALGAVSVWVLVSVLSC-LVSLVIGFVARPYI 231 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~-----~g-~~~g~~~~~~~~~~l~~-p~gia~d~~g~lyV 231 (269)
..|.++|+..+ |.+-|.+.. +. .++.+|.+..-... .| ...+... .+.+.. ...|.++++|.|++
T Consensus 82 g~~lDlAI~G~-GFF~V~~~~-G~--~yTR~G~F~~d~~G~Lvt~~G~~vlg~~g----pI~lp~~~~~i~I~~dG~I~~ 153 (253)
T PRK12689 82 KNPLDVAIDGD-AFLAVQTPQ-GE--RYTRDGALEINAQGQLVTSDGYPVLGTGG----PITFQPTDTGIAISPDGTVSV 153 (253)
T ss_pred CCceeEEECCC-cEEEEEeCC-Cc--EEEeCCceEECCCCCEEcCCCCEeecCCC----CeEeCCCCCcEEECCCCeEEE
Confidence 46889999875 766665543 31 26666654432110 11 0111110 112211 14799999999976
Q ss_pred Ec
Q 024317 232 IR 233 (269)
Q Consensus 232 ad 233 (269)
.+
T Consensus 154 ~~ 155 (253)
T PRK12689 154 NE 155 (253)
T ss_pred ec
Confidence 43
No 246
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=38.91 E-value=4.5e+02 Score=26.94 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=37.2
Q ss_pred eEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC-ccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317 162 FELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG-SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT 235 (269)
Q Consensus 162 ~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~ 235 (269)
+++|.+.+ |+|.|+.. .|.||.|+..|.. +... .+.| ....||.+..||+-.++...
T Consensus 581 s~~aTt~~-G~iavgs~-~G~IRLyd~~g~~----AKT~lp~lG-----------~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 581 SCFATTED-GYIAVGSN-KGDIRLYDRLGKR----AKTALPGLG-----------DPIIGIDVTADGKWILATCK 638 (794)
T ss_pred eEEEecCC-ceEEEEeC-CCcEEeecccchh----hhhcCCCCC-----------CCeeEEEecCCCcEEEEeec
Confidence 57887765 99999887 5789999865421 1111 0112 33578999999977776643
No 247
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.59 E-value=4.4e+02 Score=26.74 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=57.5
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
..|.+.++..+.|+-.....|.++.-+ |- +.+.+. =.....+.+-|+ ..++++..-.+.|
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH----------------dDSvm~V~F~P~-~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH----------------DDSVMSVQFLPK-THLFFTCGKDGKV 616 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc----------------cCceeEEEEccc-ceeEEEecCcceE
Confidence 457777888888887655545444322 11 222221 123457888886 8999999888888
Q ss_pred EEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 184 RQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 184 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
.+++-+.=....-... ..+...-+|+.++|...|+.
T Consensus 617 KqWDg~kFe~iq~L~~--------------H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 617 KQWDGEKFEEIQKLDG--------------HHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred Eeechhhhhhheeecc--------------chheeeeeEEcCCCCeEEec
Confidence 8886443211111111 22445667888888777776
No 248
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=38.33 E-value=2.9e+02 Score=24.70 Aligned_cols=91 Identities=10% Similarity=0.129 Sum_probs=56.7
Q ss_pred EEEEeC-CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC----CCeEEEEECC-
Q 024317 117 IYVADK-SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG----NQLIRQINLK- 189 (269)
Q Consensus 117 lyVaD~-~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~----n~~I~~~~~~- 189 (269)
|++++. +-.+|..++.++. ......+. +..=.=+.++++++.||++-.. ...|++++.+
T Consensus 251 l~~s~~~G~~hly~~~~~~~~~~~lT~G~--------------~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~ 316 (353)
T PF00930_consen 251 LWISERDGYRHLYLYDLDGGKPRQLTSGD--------------WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS 316 (353)
T ss_dssp EEEEETTSSEEEEEEETTSSEEEESS-SS--------------S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred EEEEEcCCCcEEEEEcccccceeccccCc--------------eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence 777774 3456888888776 44433322 2111236668887899887765 4579999998
Q ss_pred CCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317 190 PEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG 236 (269)
Q Consensus 190 ~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g 236 (269)
++...+..... + .. ..+.++++|..||..+.|
T Consensus 317 ~~~~~~LT~~~---~-----------~~-~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 317 GGEPKCLTCED---G-----------DH-YSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp TTEEEESSTTS---S-----------TT-EEEEE-TTSSEEEEEEES
T ss_pred CCCeEeccCCC---C-----------Cc-eEEEECCCCCEEEEEEcC
Confidence 76666554331 1 01 468899999888877543
No 249
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=37.38 E-value=2e+02 Score=26.76 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=20.3
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl 74 (269)
++|-++-++-.+||+.+.++-|+++|.
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdI 341 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDI 341 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeecc
Confidence 455565456778999988888888875
No 250
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=36.98 E-value=4.8e+02 Score=26.73 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=22.4
Q ss_pred CceEEEcCCCCEEEEeCCCCEEEEEeCCcc
Q 024317 106 PKSFAVDMKGNIYVADKSNHVIRKITNLGV 135 (269)
Q Consensus 106 P~giavd~~G~lyVaD~~n~~I~~~~~~g~ 135 (269)
-.|+++|.-+.+.|+-...+-+..++-.+.
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCc
Confidence 378999998888888776666666665443
No 251
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=36.23 E-value=3.6e+02 Score=25.11 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=69.3
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC---C
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS---N 124 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~---n 124 (269)
+++.++ .+|.++++-....+|..+|. ..|++..-. .+. .....+..|.+ .+|.|+.+-.. +
T Consensus 177 ~S~sfn-~dGs~l~TtckDKkvRv~dp---r~~~~v~e~-~~h----------eG~k~~Raifl-~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 177 YSMSFN-RDGSLLCTTCKDKKVRVIDP---RRGTVVSEG-VAH----------EGAKPARAIFL-ASGKIFTTGFSRMSE 240 (472)
T ss_pred EEEEec-cCCceeeeecccceeEEEcC---CCCcEeeec-ccc----------cCCCcceeEEe-ccCceeeeccccccc
Confidence 566775 68999999998899999973 455554432 111 11223455555 67776555432 2
Q ss_pred CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEE---eCCCCEEEEEECCCCeEEEEECCCCe
Q 024317 125 HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTF---VPHICALLISDHGNQLIRQINLKPED 192 (269)
Q Consensus 125 ~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~---~~~~g~LyVaD~~n~~I~~~~~~~~~ 192 (269)
..+-..+++.. ..++ ...|..-+|+.+ |++.+-||++--+.+.||-|......
T Consensus 241 Rq~aLwdp~nl~eP~~---------------~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 241 RQIALWDPNNLEEPIA---------------LQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cceeccCcccccCcce---------------eEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 33444455443 2221 122455566543 77778899999999999988766543
No 252
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.90 E-value=3.9e+02 Score=25.38 Aligned_cols=68 Identities=9% Similarity=0.064 Sum_probs=44.2
Q ss_pred eEEEcCCCC-EEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 108 SFAVDMKGN-IYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 108 giavd~~G~-lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
-+-+.+.++ ++++-.....++.++.++. ..+.|. =.+....++.|.++.++|+-...+.|
T Consensus 115 ~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h----------------tDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 115 VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH----------------TDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC----------------cceeEeeccccCCCeEEEecCCCceE
Confidence 355566555 5555444445555565554 222222 23456788888888999999999999
Q ss_pred EEEECCCC
Q 024317 184 RQINLKPE 191 (269)
Q Consensus 184 ~~~~~~~~ 191 (269)
+.++....
T Consensus 179 rl~DtR~~ 186 (487)
T KOG0310|consen 179 RLWDTRSL 186 (487)
T ss_pred EEEEeccC
Confidence 99997765
No 253
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=35.70 E-value=2.1e+02 Score=24.70 Aligned_cols=69 Identities=10% Similarity=-0.062 Sum_probs=35.3
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC-ccCCCcccceeeeecc-ceeeEEEecCCcEEEE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG-SALGAVSVWVLVSVLS-CLVSLVIGFVARPYII 232 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~l~-~p~gia~d~~g~lyVa 232 (269)
..|.++|+..+ |.+-|.+.. +. ..++.+|.+..-....- ...|...+ ..+.+. ....+.++++|.|++.
T Consensus 90 g~~lDlAI~G~-GfF~V~~~~-G~-~~yTR~G~F~~d~~G~Lvt~~G~~vl--~~I~vp~~~~~~~i~~dG~i~~~ 160 (262)
T PRK12691 90 GNDLDLAIQGR-GYFQIQLPD-GE-TAYTRAGAFNRSADGQIVTSDGYPVQ--PGITIPQDATSITINASGQVSAT 160 (262)
T ss_pred CCceeEEEcCC-cEEEEEcCC-CC-EEEeeCCCeeECCCCCEECCCCCEeE--eeeecCCCCceEEECCCCEEEEE
Confidence 46889999775 665555443 32 23777776554311100 01111111 012221 1147999999999764
No 254
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=35.48 E-value=3.9e+02 Score=25.28 Aligned_cols=52 Identities=6% Similarity=0.050 Sum_probs=30.5
Q ss_pred CEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317 171 CALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG 236 (269)
Q Consensus 171 g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g 236 (269)
+.||+.+. +++|+.++.+.+...-.... +.. ....| ++...+|++||+...|
T Consensus 407 ~~v~~g~~-dG~l~ald~~tG~~lW~~~~----~~~-------~~a~P--~~~~~~g~~yv~~~~g 458 (488)
T cd00216 407 NLVFAGAA-DGYFRAFDATTGKELWKFRT----PSG-------IQATP--MTYEVNGKQYVGVMVG 458 (488)
T ss_pred CeEEEECC-CCeEEEEECCCCceeeEEEC----CCC-------ceEcC--EEEEeCCEEEEEEEec
Confidence 68888874 67899998765543322211 100 11334 4444578999998543
No 255
>KOG4328 consensus WD40 protein [Function unknown]
Probab=35.41 E-value=3.9e+02 Score=25.28 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=44.6
Q ss_pred eEEEecCCCeEEEEeCCCCEEEEEecC-CCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317 49 SVIDRPGSSDLIVLDSSRSAFYTLSFP-LSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 49 giav~~~~g~lyV~D~~~~~I~~~dl~-~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I 127 (269)
...++|.++. .++-...++|..+|.. ++..-.....+-.. . ...+--.|---+.|++.+|++.-..-.+|
T Consensus 374 sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn----~----~t~RwlT~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 374 SAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHN----N----RTGRWLTPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred eeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeecc----C----cccccccchhheeCCCccEEEEeccCcce
Confidence 4556777777 5665666778887531 00111111111000 0 11122244456777888866666567789
Q ss_pred EEEeCCcceEEec
Q 024317 128 RKITNLGVTTIAG 140 (269)
Q Consensus 128 ~~~~~~g~~~~~g 140 (269)
-+|++.|...++.
T Consensus 445 Dv~~~~~~q~v~e 457 (498)
T KOG4328|consen 445 DVFDGNGGQMVCE 457 (498)
T ss_pred eEEcCCCCEEeee
Confidence 9999888744443
No 256
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=35.14 E-value=4.6e+02 Score=25.99 Aligned_cols=80 Identities=9% Similarity=-0.040 Sum_probs=41.9
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCC
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGR 237 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~ 237 (269)
...+.+.+ .|+..|.-+-...+.|.+||+.......-.++....+ .............+++|..| .||+...+++
T Consensus 219 ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~---~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 219 SSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDK---YPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred eeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccC---ccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 33455554 4434444444447789999998876655444311111 00001112335567778777 6666666666
Q ss_pred ccccc
Q 024317 238 LDPPL 242 (269)
Q Consensus 238 ~~~~~ 242 (269)
|.-+.
T Consensus 295 Iy~yn 299 (720)
T KOG0321|consen 295 IYFYN 299 (720)
T ss_pred EEEEe
Confidence 55443
No 257
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.13 E-value=3.2e+02 Score=25.09 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred cCCCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317 112 DMKGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL 188 (269)
Q Consensus 112 d~~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~ 188 (269)
+..|.+-+.-.....|+.+| +.|. .++.|. .++..+++++|. |.-.++-..+..++.++.
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh----------------dnwVr~~af~p~-Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH----------------DNWVRGVAFSPG-GKYILSCADDKTLRVWDL 363 (406)
T ss_pred CCCccEEEeecccceEEEEeccCCeEEEEEecc----------------cceeeeeEEcCC-CeEEEEEecCCcEEEEEe
Q ss_pred CCCeE
Q 024317 189 KPEDC 193 (269)
Q Consensus 189 ~~~~~ 193 (269)
.....
T Consensus 364 ~~~~c 368 (406)
T KOG0295|consen 364 KNLQC 368 (406)
T ss_pred cccee
No 258
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=34.89 E-value=1.8e+02 Score=25.14 Aligned_cols=32 Identities=6% Similarity=-0.099 Sum_probs=18.9
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~ 193 (269)
..|.++|+..+ |.+-|.+..+.+ .++.+|.+.
T Consensus 86 g~~lD~Ai~G~-GfF~V~~~~G~~--~yTR~G~F~ 117 (260)
T PRK12817 86 GNKTDLAIDGE-GFFRVIMADGTY--AYTRAGNFN 117 (260)
T ss_pred CCcceEEECCC-cEEEEEcCCCCe--EEEeCCcee
Confidence 46788888765 666665544322 255555443
No 259
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=34.89 E-value=3.1e+02 Score=23.99 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=41.0
Q ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-C--CCCcc
Q 024317 163 ELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-H--TGRLD 239 (269)
Q Consensus 163 gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~--~g~~~ 239 (269)
.-.+.|+ ..+||+-.....+++|+-+.+.-...... | .+....-+-+.++|.+|-+- . +-|+|
T Consensus 229 SASL~P~-k~~fVaGged~~~~kfDy~TgeEi~~~nk----g---------h~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 229 SASLHPK-KEFFVAGGEDFKVYKFDYNTGEEIGSYNK----G---------HFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred cccccCC-CceEEecCcceEEEEEeccCCceeeeccc----C---------CCCceEEEEECCCCceeeccCCCceEEEE
Confidence 3456787 58999998888899999776543322111 1 12334567788888888776 2 34455
Q ss_pred cc
Q 024317 240 PP 241 (269)
Q Consensus 240 ~~ 241 (269)
|-
T Consensus 295 Qt 296 (334)
T KOG0278|consen 295 QT 296 (334)
T ss_pred Ee
Confidence 43
No 260
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.46 E-value=4.7e+02 Score=25.95 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=52.4
Q ss_pred cCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317 102 RFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD 177 (269)
Q Consensus 102 ~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD 177 (269)
.-..-..|+++|.--.+.+-+..-.|..++.++. .++-|. -...-.|++.|++.+-|++-
T Consensus 96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH----------------~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH----------------EHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc----------------ceEEEEEEecCCCccceeee
Confidence 3446678999988777777777777888888775 333333 13456789999878888888
Q ss_pred CCCCeEEEEECCC
Q 024317 178 HGNQLIRQINLKP 190 (269)
Q Consensus 178 ~~n~~I~~~~~~~ 190 (269)
.-.+.|.+++...
T Consensus 160 sLDrTVKVWslgs 172 (794)
T KOG0276|consen 160 SLDRTVKVWSLGS 172 (794)
T ss_pred eccccEEEEEcCC
Confidence 8777777777654
No 261
>KOG4731 consensus Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains [Cell cycle control, cell division, chromosome partitioning]
Probab=34.26 E-value=4.1e+02 Score=25.19 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=21.1
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl 74 (269)
.|+.++ .+-.|.+|+.|..+=+|.+++.
T Consensus 38 els~le----hqVsG~Vf~Vns~t~qI~nF~~ 65 (512)
T KOG4731|consen 38 ELSSLE----HQVSGDVFAVNSTTFQIVNFNY 65 (512)
T ss_pred eccccc----cccceeEEEEeeeEEEEEEecc
Confidence 455565 3468999999988888888865
No 262
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=34.09 E-value=91 Score=18.04 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=16.1
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl 74 (269)
.++++ .++.+||.+. +++++.+|.
T Consensus 15 ~~~~v--~~g~vyv~~~-dg~l~ald~ 38 (40)
T PF13570_consen 15 SSPAV--AGGRVYVGTG-DGNLYALDA 38 (40)
T ss_dssp S--EE--CTSEEEEE-T-TSEEEEEET
T ss_pred cCCEE--ECCEEEEEcC-CCEEEEEeC
Confidence 34577 5799999986 677888864
No 263
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.83 E-value=4.8e+02 Score=26.43 Aligned_cols=69 Identities=4% Similarity=0.063 Sum_probs=46.0
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCCCE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSNHV 126 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n~~ 126 (269)
+.+.+....-++.|+-+..+.|..||+. .+....++.+. -..-.+|.+.+ .++.|++-..++.
T Consensus 137 ~~ldfh~tep~iliSGSQDg~vK~~DlR--~~~S~~t~~~n--------------SESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 137 NKLDFHSTEPNILISGSQDGTVKCWDLR--SKKSKSTFRSN--------------SESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred eeeeeccCCccEEEecCCCceEEEEeee--ccccccccccc--------------chhhhceeeccCCCceEEEecCCce
Confidence 4455555566777777777777777763 33333333332 12456788876 6789999999999
Q ss_pred EEEEeC
Q 024317 127 IRKITN 132 (269)
Q Consensus 127 I~~~~~ 132 (269)
++++|-
T Consensus 201 lqlWDl 206 (839)
T KOG0269|consen 201 LQLWDL 206 (839)
T ss_pred EEEeec
Confidence 999983
No 264
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=33.16 E-value=2e+02 Score=28.22 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=43.5
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCC
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGR 237 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~ 237 (269)
..|..+.+.|..-.++||-. +-|+.+++....++.-.-. .......+++++.| +|.+..+.++
T Consensus 567 G~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKkL~t--------------g~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKKLLT--------------GSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred CceeEEEecCCCceEEEEec--cceEEEehhHHHHHHHHhc--------------CCeeeeeeeecCCCCeEEEecCCCe
Confidence 35778899998789999886 4477777655433221111 11335678888888 8888887766
Q ss_pred ccc
Q 024317 238 LDP 240 (269)
Q Consensus 238 ~~~ 240 (269)
+.-
T Consensus 631 ~~W 633 (733)
T KOG0650|consen 631 MCW 633 (733)
T ss_pred eEE
Confidence 653
No 265
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.00 E-value=4.9e+02 Score=25.79 Aligned_cols=138 Identities=10% Similarity=0.052 Sum_probs=68.0
Q ss_pred cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc--cEE----EEEcCCcc----------cCCCCCcc-cccCCCCceE
Q 024317 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES--VVK----RLAGDGVQ----------GYSDGEPG-SARFDKPKSF 109 (269)
Q Consensus 47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g--~~~----~~~g~g~~----------g~~dg~~~-~~~~~~P~gi 109 (269)
-..+|+.+.+-.+|++-..++.|+.+|.. .++ ... .+.+.-+. ........ ..-+..-..+
T Consensus 147 vkS~cf~~~n~~vF~tGgRDg~illWD~R--~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 147 VKSECFMPTNPAVFCTGGRDGEILLWDCR--CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cchhhhccCCCcceeeccCCCcEEEEEEe--ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 45577777788999999999999999863 222 000 00010000 00000000 1112222334
Q ss_pred EEcCCCCEEEEe-CCCCEEEEEeCCcceEEecCCCCCCCCCCC-ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEE
Q 024317 110 AVDMKGNIYVAD-KSNHVIRKITNLGVTTIAGGGSKKEGRADG-PAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN 187 (269)
Q Consensus 110 avd~~G~lyVaD-~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~ 187 (269)
.+ .|....++- .....|.++|-....+..-.... ..+. +........-..|.+|..+.+||+..+ .+.|+.|+
T Consensus 225 ~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~---~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~yn 299 (720)
T KOG0321|consen 225 LF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPR---GSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYN 299 (720)
T ss_pred EE-eccceeeeccCCCcceEEEeecccccccccCCC---cccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEe
Confidence 44 334333333 23556677764332111111000 0011 111223344467888887778998888 56899998
Q ss_pred CCCC
Q 024317 188 LKPE 191 (269)
Q Consensus 188 ~~~~ 191 (269)
...-
T Consensus 300 m~s~ 303 (720)
T KOG0321|consen 300 MRSL 303 (720)
T ss_pred cccc
Confidence 7653
No 266
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=32.73 E-value=2e+02 Score=21.05 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=32.7
Q ss_pred ceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCC
Q 024317 161 DFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGR 237 (269)
Q Consensus 161 P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~ 237 (269)
+..+.+.++ |+|++.|..+..|+.=... . + ..+..+.+..+|++.+-+..|.
T Consensus 55 ~~~l~l~~d-GnLvl~~~~g~~vW~S~t~---------~----~-----------~~~~~~~L~ddGnlvl~~~~~~ 106 (114)
T smart00108 55 SCTLTLQSD-GNLVLYDGDGRVVWSSNTT---------G----A-----------NGNYVLVLLDDGNLVIYDSDGN 106 (114)
T ss_pred CEEEEEeCC-CCEEEEeCCCCEEEEeccc---------C----C-----------CCceEEEEeCCCCEEEECCCCC
Confidence 346777766 8999998765555432110 0 0 2245677888999999886543
No 267
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=32.62 E-value=1.2e+02 Score=26.70 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=47.3
Q ss_pred CCCC--ceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC
Q 024317 103 FDKP--KSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN 180 (269)
Q Consensus 103 ~~~P--~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n 180 (269)
+.+| .++.+-+|+.|+-+-.-.||||+|+......++=.. . . =..-+.+|++|+ ..|..+-...
T Consensus 249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-y-----------H-sagvn~vAfspd-~~lmAaaskD 314 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-Y-----------H-SAGVNAVAFSPD-CELMAAASKD 314 (323)
T ss_pred ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-h-----------h-hcceeEEEeCCC-CchhhhccCC
Confidence 4455 789998999999988889999999854331111000 0 0 023478999997 5677766667
Q ss_pred CeEEEEE
Q 024317 181 QLIRQIN 187 (269)
Q Consensus 181 ~~I~~~~ 187 (269)
.||-.++
T Consensus 315 ~rISLWk 321 (323)
T KOG0322|consen 315 ARISLWK 321 (323)
T ss_pred ceEEeee
Confidence 7776654
No 268
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=31.51 E-value=2e+02 Score=24.98 Aligned_cols=69 Identities=7% Similarity=-0.083 Sum_probs=35.9
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC-ccCCCcccceeeeeccce---eeEEEecCCcEEEE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG-SALGAVSVWVLVSVLSCL---VSLVIGFVARPYII 232 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~l~~p---~gia~d~~g~lyVa 232 (269)
..|.++|+..+ |.+.|.+..+.+ .++.+|.+..-....= ...|.. ... .+.+... ..|.++++|.|++.
T Consensus 90 g~~lDlAI~G~-GFF~V~~~~G~~--~YTR~G~F~~d~~G~Lvt~~G~~-vl~-~I~lp~~~~~~~i~I~~dG~I~~~ 162 (264)
T PRK12816 90 GNKLDVAIEGE-GFFKILMPDGTY--AYTRDGSFKIDANGQLVTSNGYR-LLP-EIIFPENYILNSITISEEGIVSVK 162 (264)
T ss_pred CCcceEEECCC-cEEEEEcCCCCe--EEeeCCCeeECCCCCEECCCCCE-ecc-eeecCCCcccccEEECCCCeEEEe
Confidence 46889999876 776665543322 3666666553211100 011111 100 0222111 47999999999874
No 269
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=31.24 E-value=1.8e+02 Score=25.17 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=13.1
Q ss_pred CCCCcceEEEecCCCeEEEEe
Q 024317 43 LEINPHSVIDRPGSSDLIVLD 63 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D 63 (269)
.-.+|.++|+. .+|.+-|.+
T Consensus 88 ~Tg~~lDlAI~-G~GFF~V~~ 107 (256)
T PRK12818 88 STDKPTDFAIQ-GRGFFTVER 107 (256)
T ss_pred ecCCcceEEEC-CCceEEEEc
Confidence 34589999994 455555544
No 270
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=31.00 E-value=2.6e+02 Score=24.16 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=34.8
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc-----cC-ccCCCcccceeeeeccc-eeeEEEecCCcEEE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ-----SG-SALGAVSVWVLVSVLSC-LVSLVIGFVARPYI 231 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~-----~g-~~~g~~~~~~~~~~l~~-p~gia~d~~g~lyV 231 (269)
..|.++|+..+ |.+-|.+.+ + + .++.+|.+..-... .| ...+... ..+.+.. ...+.++++|.|++
T Consensus 89 g~~lDlAI~G~-GfF~V~~~~-g-~-~YTR~G~F~~d~~G~Lvt~~G~~vlg~~g---~pI~~p~~~~~~~i~~dG~I~~ 161 (263)
T PRK12636 89 GRPLDLAISGD-GFFRVGDGD-N-T-AYTRAGNFYLDNEGNIVNADGLYLLGMNG---GRIQIPTDAQSFSIGADGTVSY 161 (263)
T ss_pred CCceeEEEcCC-cEEEEEeCC-C-C-EEEeCCCeEECCCCCEEcCCCCEeecCCC---CceEeCCCCceEEECCCCeEEE
Confidence 46889999875 776666543 3 2 26666654432110 11 0111100 0122221 14799999999976
Q ss_pred E
Q 024317 232 I 232 (269)
Q Consensus 232 a 232 (269)
.
T Consensus 162 ~ 162 (263)
T PRK12636 162 V 162 (263)
T ss_pred E
Confidence 5
No 271
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=30.86 E-value=3.4e+02 Score=23.16 Aligned_cols=108 Identities=15% Similarity=0.246 Sum_probs=59.8
Q ss_pred CcceEEEecCCCeEEEEe--CCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317 46 NPHSVIDRPGSSDLIVLD--SSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D--~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~ 123 (269)
.+...++++++..+.+.. .+...++.. ..++...... .+ ..+..| .+|++|.+|+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~----~~~~~~~~~~-~g-----------~~l~~P---S~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVG----PAGGPVRPVL-TG-----------GSLTRP---SWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEE----cCCCcceeec-cC-----------Cccccc---cccCCCCEEEEEcC
Confidence 577888986555565544 455666666 3334333332 10 134455 57889999999987
Q ss_pred CCEEEEE--eCCcc-eEE-ecCCCCCCCCCCCcccccccc-CceEEEEeCCCCEE-EEE-ECCCCeEEEE
Q 024317 124 NHVIRKI--TNLGV-TTI-AGGGSKKEGRADGPAQNASFS-NDFELTFVPHICAL-LIS-DHGNQLIRQI 186 (269)
Q Consensus 124 n~~I~~~--~~~g~-~~~-~g~~~~~~~~~~~~~~~~~l~-~P~gia~~~~~g~L-yVa-D~~n~~I~~~ 186 (269)
....+.+ ..+|. ... .... .+. ....+.+++++-++ +|. +.+.++|+.-
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~--------------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWP--------------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred CCceEEEEecCCCcceeEEeccc--------------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 6665555 24444 211 1110 011 45788999985554 333 3444566554
No 272
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=30.83 E-value=2.5e+02 Score=24.15 Aligned_cols=69 Identities=9% Similarity=-0.047 Sum_probs=35.2
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC-ccCCCcccceeeeeccc-eeeEEEecCCcEEEE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG-SALGAVSVWVLVSVLSC-LVSLVIGFVARPYII 232 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~l~~-p~gia~d~~g~lyVa 232 (269)
..|.++|+..+ |..-|.+.. +. ..++.+|.+..-....- ...|...+ . .+.+.. ...+.++++|.|++.
T Consensus 88 g~~lD~AI~G~-GfF~V~~~~-g~-~~yTR~G~F~~d~~G~Lvt~~G~~Vl-~-~I~lp~~~~~~~I~~dG~i~~~ 158 (259)
T TIGR02488 88 GNDLDLAIEGE-GFFQVLMPD-GT-TAYTRDGAFKINAEGQLVTSNGYPLQ-P-EITIPENATSITVGSDGEVSVR 158 (259)
T ss_pred CCcceEEEcCC-cEEEEEcCC-CC-eEEeeCCceEECCCCCEECCCCCEec-C-ceecCCCCceEEECCCCeEEEe
Confidence 46889999875 766565443 32 23666666543211000 01111111 0 122221 146999999999874
No 273
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.50 E-value=4.1e+02 Score=24.00 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=39.3
Q ss_pred CceEEEcCCCCEEEEeCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 106 PKSFAVDMKGNIYVADKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 106 P~giavd~~G~lyVaD~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
-++|+++|.|.|-.+=.+.+.++.+|- .|+ ..+.-. =+.|.-|-+++++.+.+|.-. ++|
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L----------------~~~at~v~w~~~Gd~F~v~~~--~~i 191 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL----------------KNKATLVSWSPQGDHFVVSGR--NKI 191 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccceeecc----------------CCcceeeEEcCCCCEEEEEec--cEE
Confidence 456777777776666666666666652 333 222111 134556778887444555443 677
Q ss_pred EEEECCCCeE
Q 024317 184 RQINLKPEDC 193 (269)
Q Consensus 184 ~~~~~~~~~~ 193 (269)
-.+..+...+
T Consensus 192 ~i~q~d~A~v 201 (362)
T KOG0294|consen 192 DIYQLDNASV 201 (362)
T ss_pred EEEecccHhH
Confidence 7777665443
No 274
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=30.35 E-value=2.3e+02 Score=25.96 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=41.1
Q ss_pred cCCCCEEEEeCCCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317 112 DMKGNIYVADKSNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL 188 (269)
Q Consensus 112 d~~G~lyVaD~~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~ 188 (269)
|-+..++|+-++...|++.+... . .++.|. -.|||--.=.+.+.|+-...+.|+.|+.
T Consensus 327 dfd~kyIVsASgDRTikvW~~st~efvRtl~gH-------------------kRGIAClQYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 327 DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH-------------------KRGIACLQYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred ccccceEEEecCCceEEEEeccceeeehhhhcc-------------------cccceehhccCeEEEecCCCceEEEEec
Confidence 34555888888888888887543 3 444443 2366654445788888888888888887
Q ss_pred CCC
Q 024317 189 KPE 191 (269)
Q Consensus 189 ~~~ 191 (269)
+-+
T Consensus 388 ~~G 390 (499)
T KOG0281|consen 388 ECG 390 (499)
T ss_pred ccc
Confidence 653
No 275
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=30.00 E-value=4.4e+02 Score=24.22 Aligned_cols=71 Identities=8% Similarity=-0.017 Sum_probs=44.3
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I 127 (269)
..+|++ .+|.+.-+-+..++|.|+=. .++|+...-.-.|. ....-..+++++++.+.-+-..+..|
T Consensus 177 Aalafs-~~G~llATASeKGTVIRVf~--v~~G~kl~eFRRG~-----------~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 177 AALAFS-PDGTLLATASEKGTVIRVFS--VPEGQKLYEFRRGT-----------YPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred eEEEEC-CCCCEEEEeccCceEEEEEE--cCCccEeeeeeCCc-----------eeeEEEEEEECCCCCeEEEecCCCeE
Confidence 567886 47888888777777655422 35555333222221 12233679999999977777777787
Q ss_pred EEEeC
Q 024317 128 RKITN 132 (269)
Q Consensus 128 ~~~~~ 132 (269)
..|.-
T Consensus 243 HiFKL 247 (391)
T KOG2110|consen 243 HIFKL 247 (391)
T ss_pred EEEEe
Confidence 77753
No 276
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=29.83 E-value=2.7e+02 Score=21.68 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=46.2
Q ss_pred CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCc---------ccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEP---------GSARFDKPKSFAVDMKGNIYVADKSNHV 126 (269)
Q Consensus 56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~---------~~~~~~~P~giavd~~G~lyVaD~~n~~ 126 (269)
.-.|.+.|..++.|..++ ..+|++......++.||-.+.. .......|--+.--.||.+-+.|..+++
T Consensus 40 ~r~l~f~d~~~G~v~V~~---~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~ 116 (135)
T TIGR03054 40 SLWLVFEDRPDGAVAVVE---TPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGW 116 (135)
T ss_pred EEEEEEecCCCCeEEEEE---CCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCc
Confidence 456788888888888876 5788877777666655543221 1122445666666667777777776655
Q ss_pred EEEEe
Q 024317 127 IRKIT 131 (269)
Q Consensus 127 I~~~~ 131 (269)
.....
T Consensus 117 ~i~L~ 121 (135)
T TIGR03054 117 SIELN 121 (135)
T ss_pred EEEEe
Confidence 44443
No 277
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=29.43 E-value=3.9e+02 Score=23.73 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=39.8
Q ss_pred CccCCCCcceEEEecCCC--eEEEEeCCC-CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317 40 GHQLEINPHSVIDRPGSS--DLIVLDSSR-SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116 (269)
Q Consensus 40 g~~~~~~P~giav~~~~g--~lyV~D~~~-~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~ 116 (269)
+...+..+.++.+...+| .+++-+..+ +.|..+|+ .++++...+.--..| ......+.+.. ...+.
T Consensus 37 d~~~~~~~~~l~~~~~~~~~yL~f~n~~~~~~i~~~Dl---~~~~l~~~i~~ekeG-------pngi~~~~~~~-~~~Ds 105 (333)
T PF13970_consen 37 DDETLYLSYYLQSFSSDGKKYLYFLNNYKSHSIDIYDL---DSGKLVKKIPFEKEG-------PNGIGRPFGFF-QNLDS 105 (333)
T ss_dssp -TTS-S--SSEEEEEETTEEEEEEEE-ST--EEEEEET---TTTEEEEEEE-BSSS-------TTB-TT---EE-ESSST
T ss_pred CceeecccccEEEEEcCCcEEEEEEcCCCcceEEEEEC---CCCceeeeeeeeeEC-------CCCccccccce-EcCCc
Confidence 344555666665322233 454677776 99999997 466655433211111 11234556666 45555
Q ss_pred EEEEe-CCCCEEEEEeCCcc
Q 024317 117 IYVAD-KSNHVIRKITNLGV 135 (269)
Q Consensus 117 lyVaD-~~n~~I~~~~~~g~ 135 (269)
+|+.+ ....++..++..|.
T Consensus 106 i~l~~~~~~~~l~~~n~~G~ 125 (333)
T PF13970_consen 106 IFLFNSYAFPKLFLFNSQGE 125 (333)
T ss_dssp TSEEEEGGGTEEEEE-TT--
T ss_pred eEEEecCCcceEEEEcCCCe
Confidence 55555 35578999999987
No 278
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.25 E-value=34 Score=26.23 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 024317 5 FVYSSLAI 12 (269)
Q Consensus 5 ~~~~~~~~ 12 (269)
|++.++++
T Consensus 2 W~l~~iii 9 (130)
T PF12273_consen 2 WVLFAIII 9 (130)
T ss_pred eeeHHHHH
Confidence 44334333
No 279
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.21 E-value=4e+02 Score=25.86 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=48.2
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
.+...+.+++....|.-...+.|..+|..-. +..+- + --.|+-++..|+ |.+++.-...+.+
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k---------------a-~~~P~~iaWHp~-gai~~V~s~qGel 323 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK---------------A-EFIPTLIAWHPD-GAIFVVGSEQGEL 323 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee---------------e-cccceEEEEcCC-CcEEEEEcCCceE
Confidence 3455666677776666666778888886544 33331 1 135999999998 7777777778899
Q ss_pred EEEECCCC
Q 024317 184 RQINLKPE 191 (269)
Q Consensus 184 ~~~~~~~~ 191 (269)
+.||..-.
T Consensus 324 Q~FD~ALs 331 (545)
T PF11768_consen 324 QCFDMALS 331 (545)
T ss_pred EEEEeecC
Confidence 99997644
No 280
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=29.03 E-value=1.2e+02 Score=17.41 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=8.8
Q ss_pred EEEEEECCCCeEEEEECCC
Q 024317 172 ALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 172 ~LyVaD~~n~~I~~~~~~~ 190 (269)
.+|+. ..++.|+.++.+.
T Consensus 2 ~v~~~-~~~g~l~AlD~~T 19 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKT 19 (38)
T ss_dssp EEEEE-TTTSEEEEEETTT
T ss_pred EEEEe-CCCCEEEEEECCC
Confidence 34444 4445555555443
No 281
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=29.01 E-value=3.5e+02 Score=23.38 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=35.6
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEe--cCCCCCccEEEEEcCCcccC-CCCCc-ccccCCCC-ceEEEcCCCCE
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLS--FPLSEESVVKRLAGDGVQGY-SDGEP-GSARFDKP-KSFAVDMKGNI 117 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~d--l~~~~~g~~~~~~g~g~~g~-~dg~~-~~~~~~~P-~giavd~~G~l 117 (269)
.-.+|.++|+. .+|.+-|.+....+.|--+ +.++.+|.+.+.-|...-+. .+|.. ....+..| ..+.|+++|.|
T Consensus 84 ~Tg~~lD~Ai~-G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~~~~~g~~~~~~~i~~~~~~~~i~~dG~i 162 (260)
T PRK12817 84 TTGNKTDLAID-GEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDNGNRLEIQLEAGVGINNRNTGFDSNNFTVDEDGGI 162 (260)
T ss_pred ecCCcceEEEC-CCcEEEEEcCCCCeEEEeCCceeECCCCCEEcCCCCEEEecccCcccccCCcccCCCCceEECCCCeE
Confidence 34589999994 3555555443333334221 11134555444322211110 01100 00112223 46888889988
Q ss_pred EEEe
Q 024317 118 YVAD 121 (269)
Q Consensus 118 yVaD 121 (269)
++.+
T Consensus 163 ~~~~ 166 (260)
T PRK12817 163 SVKN 166 (260)
T ss_pred EEec
Confidence 7744
No 282
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=28.76 E-value=35 Score=21.30 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=9.1
Q ss_pred CcchhhHHHHHHHHHHHhhhhh
Q 024317 1 MASHFVYSSLAITLLSLLFSLV 22 (269)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~ 22 (269)
|+|.+ ++|.++=++.+|+-
T Consensus 3 lKKsl---lLlfflG~ISlSlC 21 (46)
T PF03032_consen 3 LKKSL---LLLFFLGTISLSLC 21 (46)
T ss_pred chHHH---HHHHHHHHcccchH
Confidence 56666 33333334455553
No 283
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=28.54 E-value=3.2e+02 Score=23.48 Aligned_cols=68 Identities=7% Similarity=-0.033 Sum_probs=35.7
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC-ccCCCcccceee-eecc-ceeeEEEecCCcEEEE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG-SALGAVSVWVLV-SVLS-CLVSLVIGFVARPYII 232 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g-~~~g~~~~~~~~-~~l~-~p~gia~d~~g~lyVa 232 (269)
..|.++|+..+ |.+.|.+.. +. ..++.+|.+..-....- ...|. .+ .+ +.+. ....+.++++|.|++.
T Consensus 90 ~~~lD~Ai~G~-GfF~v~~~~-G~-~~yTR~G~F~~d~~G~Lvt~~G~-~v--l~~I~~p~~~~~~~i~~dG~I~~~ 160 (261)
T PRK12693 90 GNSLDVAIEGQ-GFFQVQLPD-GT-IAYTRDGSFKLDQDGQLVTSGGY-PL--QPEITIPENATSITIGTDGTVSVT 160 (261)
T ss_pred CCcceEEECCC-cEEEEEcCC-CC-eEEeeCCCeeECCCCCEECCCCC-EE--eeecccCCCCceEEECCCCeEEEe
Confidence 46889999875 766665543 32 23677666554311100 01111 11 11 2221 1147999999999874
No 284
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=28.33 E-value=2.5e+02 Score=27.08 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=42.8
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI 183 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I 183 (269)
..+++.++-++-|+-...+-|.++|-..+ ..+-|. -....+|.+++++-+||-- .-.+.|
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGh----------------tDGascIdis~dGtklWTG-GlDntv 575 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH----------------TDGASCIDISKDGTKLWTG-GLDNTV 575 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcccceeeecccCC----------------CCCceeEEecCCCceeecC-CCccce
Confidence 44677777777777766667777774332 333332 1234678888885566644 445689
Q ss_pred EEEECCCC
Q 024317 184 RQINLKPE 191 (269)
Q Consensus 184 ~~~~~~~~ 191 (269)
|-++++..
T Consensus 576 RcWDlreg 583 (705)
T KOG0639|consen 576 RCWDLREG 583 (705)
T ss_pred eehhhhhh
Confidence 99987754
No 285
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.11 E-value=4.6e+02 Score=23.77 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=37.5
Q ss_pred CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCCCCEEEEEeCCcc
Q 024317 57 SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKSNHVIRKITNLGV 135 (269)
Q Consensus 57 g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~n~~I~~~~~~g~ 135 (269)
+.-.|+.+....|..+||. ....-+.++ +...| +-+++...+.|+-....|..|+.||-+|.
T Consensus 368 dd~vVSgSDDrTvKvWdLr-NMRsplATI----------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 368 DDRVVSGSDDRTVKVWDLR-NMRSPLATI----------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CCceeecCCCceEEEeeec-cccCcceee----------------ecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 3344566666777777663 222222222 22333 55888555547766777889999999986
No 286
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=27.92 E-value=6.4e+02 Score=25.42 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=76.3
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
.-+.||+.|++..+.++- .+|++.+|. +..+.+.+..|. -..-..+|...+|..|-+-....
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~--ndG~llqtLKgH--------------KDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDT--SDGTLLQPLKGH--------------KDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeC--CCcccccccccc--------------cceEEEEEEccCCceeccCCCce
Confidence 467889888777777775 588898874 222334444322 12335678877888887766666
Q ss_pred EEEEEeCC--cceEEecC---------CC---------CCC---CCCCCc-cccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 126 VIRKITNL--GVTTIAGG---------GS---------KKE---GRADGP-AQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 126 ~I~~~~~~--g~~~~~g~---------~~---------~~~---~~~~~~-~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
.|..+++. |...+.-. +. ..+ +.++.. .....-..-.+.+...+ |..++.-.+|+
T Consensus 76 ~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD-GqylalG~~nG 154 (1081)
T KOG1538|consen 76 SVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND-GQYLALGMFNG 154 (1081)
T ss_pred eEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCC-CcEEEEeccCc
Confidence 66666543 22111110 00 000 000000 00001123356665655 88888888999
Q ss_pred eEEEEECCCCeEEEeccc
Q 024317 182 LIRQINLKPEDCSKSSQS 199 (269)
Q Consensus 182 ~I~~~~~~~~~~~~~~~~ 199 (269)
.|..-+..+.....+..+
T Consensus 155 TIsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 155 TISIRNKNGEEKVKIERP 172 (1081)
T ss_pred eEEeecCCCCcceEEeCC
Confidence 998888888777666655
No 287
>PRK13684 Ycf48-like protein; Provisional
Probab=27.84 E-value=4.4e+02 Score=23.53 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=17.7
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
...+++++.++ +.+|++-.. +.++.-+.+++
T Consensus 215 ~~l~~i~~~~~-g~~~~vg~~-G~~~~~s~d~G 245 (334)
T PRK13684 215 RRLQSMGFQPD-GNLWMLARG-GQIRFNDPDDL 245 (334)
T ss_pred ccceeeeEcCC-CCEEEEecC-CEEEEccCCCC
Confidence 34578888776 677776543 44432234443
No 288
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=27.33 E-value=2.4e+02 Score=24.07 Aligned_cols=69 Identities=6% Similarity=-0.032 Sum_probs=34.0
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC-ccCCCccccee--eeeccc-eeeEEEecCCcEEE
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG-SALGAVSVWVL--VSVLSC-LVSLVIGFVARPYI 231 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g-~~~g~~~~~~~--~~~l~~-p~gia~d~~g~lyV 231 (269)
..|.++|+..+ |.+.|.+..+ . .++.+|.+..-....= ...|...+... .+.+.. ...+.++++|.|++
T Consensus 76 g~~lDlAI~G~-GFF~V~~~~G-~--~yTR~G~F~~d~~G~Lvt~~G~~vlg~~g~pI~lp~~~~~~~I~~dG~i~~ 148 (238)
T PRK12690 76 GGQFDFAIEGE-GFFMVETPQG-E--RLTRAGSFTPNAEGELVDPDGNRLLDAGGAPIFIPPDARSVAVGADGTLSA 148 (238)
T ss_pred CCceeEEECCC-cEEEEEcCCC-C--EEeeCCCeEECCCCCEEcCCCCEeECCCCCccccCCCCceEEECCCCeEEE
Confidence 46889998875 7777766543 1 2666665443211000 01111101001 112211 14799999999976
No 289
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=27.33 E-value=4.5e+02 Score=23.40 Aligned_cols=81 Identities=14% Similarity=0.065 Sum_probs=34.9
Q ss_pred cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccce-eeEEEecCCcEEEEcCCCC
Q 024317 159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCL-VSLVIGFVARPYIIRHTGR 237 (269)
Q Consensus 159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p-~gia~d~~g~lyVad~~g~ 237 (269)
..-..|.++++ +.||++..+ +.|+ ++........+..+..+......-...+....+ .-.++...|.||++...|.
T Consensus 187 ~riq~~gf~~~-~~lw~~~~G-g~~~-~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGk 263 (302)
T PF14870_consen 187 RRIQSMGFSPD-GNLWMLARG-GQIQ-FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGK 263 (302)
T ss_dssp S-EEEEEE-TT-S-EEEEETT-TEEE-EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTS
T ss_pred ceehhceecCC-CCEEEEeCC-cEEE-EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCc
Confidence 34567888887 888888753 4444 443333222222211111000000111122222 3445566678888888888
Q ss_pred ccccc
Q 024317 238 LDPPL 242 (269)
Q Consensus 238 ~~~~~ 242 (269)
-|+.+
T Consensus 264 tW~~~ 268 (302)
T PF14870_consen 264 TWQKD 268 (302)
T ss_dssp S-EE-
T ss_pred cceEC
Confidence 88777
No 290
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=26.66 E-value=4.9e+02 Score=23.65 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=24.0
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl 74 (269)
.+.+|+-+++.|+-..+.|+-...+.++++.+
T Consensus 131 e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 131 EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred cCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 56689999998776777777766777776643
No 291
>PRK02710 plastocyanin; Provisional
Probab=26.54 E-value=2.7e+02 Score=20.71 Aligned_cols=15 Identities=7% Similarity=0.315 Sum_probs=8.6
Q ss_pred CCCcceEEEecCCCeE
Q 024317 44 EINPHSVIDRPGSSDL 59 (269)
Q Consensus 44 ~~~P~giav~~~~g~l 59 (269)
...|..|.+. .++.|
T Consensus 43 ~F~P~~i~v~-~Gd~V 57 (119)
T PRK02710 43 AFEPSTLTIK-AGDTV 57 (119)
T ss_pred EEeCCEEEEc-CCCEE
Confidence 3457777773 34444
No 292
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.12 E-value=4.6e+02 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeC
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITN 132 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~ 132 (269)
.|.-++.+++|.+++.-...+.++.||-
T Consensus 301 ~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 301 IPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 6999999999998888888899999984
No 293
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=26.11 E-value=6.6e+02 Score=24.99 Aligned_cols=40 Identities=10% Similarity=-0.080 Sum_probs=30.1
Q ss_pred cccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317 157 SFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS 197 (269)
Q Consensus 157 ~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~ 197 (269)
....-.-|++++++++|-++++ -+.|..+++.+.......
T Consensus 474 ~~~~I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 474 KCPSISRLVVSSDGNYIAAIST-RGQIFVYNLETLESHLLK 513 (691)
T ss_pred CCCcceeEEEcCCCCEEEEEec-cceEEEEEcccceeecch
Confidence 3556678999999778888885 467999999887655443
No 294
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=25.98 E-value=4.6e+02 Score=23.16 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=69.8
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~ 125 (269)
.-..+|+.|..|.++-+-...+.|..++.....+-..+++... ..-..-..+|..|.|++..+-+...
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~------------~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD------------GHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc------------cchheeeeeeecCCCcEEEEeeccc
Confidence 4677888764477777777777788876421011223333211 1223456799999999666656555
Q ss_pred EEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317 126 VIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK 189 (269)
Q Consensus 126 ~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~ 189 (269)
.+-.+... +. ..++-.. +.=+...+++.+++ |+++.+-+....|+.+..+
T Consensus 84 t~~Iw~k~~~efecv~~lE-------------GHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLE-------------GHENEVKCVAWSAS-GNYLATCSRDKSVWIWEID 135 (312)
T ss_pred eEEEeecCCCceeEEeeee-------------ccccceeEEEEcCC-CCEEEEeeCCCeEEEEEec
Confidence 55555433 33 2222211 11244578998887 7777777777788777665
No 295
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=25.64 E-value=4.9e+02 Score=23.32 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=22.1
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEEeCCcc
Q 024317 108 SFAVDMKGNIYVADKSNHVIRKITNLGV 135 (269)
Q Consensus 108 giavd~~G~lyVaD~~n~~I~~~~~~g~ 135 (269)
-+.++|+|..+++-...+.|...+-.|-
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gd 79 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGD 79 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEecccc
Confidence 3778888988888888888888886554
No 296
>PRK13616 lipoprotein LpqB; Provisional
Probab=25.55 E-value=6.5e+02 Score=24.72 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=38.1
Q ss_pred ceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcc
Q 024317 161 DFELTFVPHICALLISDHG-NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLD 239 (269)
Q Consensus 161 P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~ 239 (269)
+..++-..+ +.|+|.-.. +..++.++.+|........ ++ .......|+..+ +.+||+|..|.++
T Consensus 499 ~~~l~W~~~-~~L~V~~~~~~~~v~~v~vDG~~~~~~~~-----~n--------~~~~v~~vaa~~-~~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTG-DSLVVGRSDPEHPVWYVNLDGSNSDALPS-----RN--------LSAPVVAVAASP-STVYVTDARAVLQ 563 (591)
T ss_pred cccceEecC-CEEEEEecCCCCceEEEecCCccccccCC-----CC--------ccCceEEEecCC-ceEEEEcCCceEE
Confidence 355655554 678776443 4558889988776543111 00 112234455553 5799999887555
Q ss_pred cc
Q 024317 240 PP 241 (269)
Q Consensus 240 ~~ 241 (269)
.+
T Consensus 564 l~ 565 (591)
T PRK13616 564 LP 565 (591)
T ss_pred ec
Confidence 54
No 297
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.40 E-value=7.9e+02 Score=25.66 Aligned_cols=68 Identities=7% Similarity=0.009 Sum_probs=48.4
Q ss_pred CceEEEcCCCCEEEEeCCCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317 106 PKSFAVDMKGNIYVADKSNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL 182 (269)
Q Consensus 106 P~giavd~~G~lyVaD~~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~ 182 (269)
-.+++.++++.+.|+=...++|..++... . +.+-+. -..+-|+++||- |.-+-+..+.+.
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H----------------~s~VKGvs~DP~-Gky~ASqsdDrt 194 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH----------------QSLVKGVSWDPI-GKYFASQSDDRT 194 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeecc----------------cccccceEECCc-cCeeeeecCCce
Confidence 35688889999999988889999998532 2 344333 345789999998 766666666666
Q ss_pred EEEEECCC
Q 024317 183 IRQINLKP 190 (269)
Q Consensus 183 I~~~~~~~ 190 (269)
|..++...
T Consensus 195 ikvwrt~d 202 (942)
T KOG0973|consen 195 LKVWRTSD 202 (942)
T ss_pred EEEEEccc
Confidence 76666443
No 298
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.25 E-value=4.8e+02 Score=23.07 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=36.1
Q ss_pred EEcC-CCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEE----EE-eCCCCEEEEEECCCC
Q 024317 110 AVDM-KGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFEL----TF-VPHICALLISDHGNQ 181 (269)
Q Consensus 110 avd~-~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gi----a~-~~~~g~LyVaD~~n~ 181 (269)
++++ ++.||+|-+ .+++...+++-- .++.-..... .-|..|..+ .+ .-+ |+|.--|..+.
T Consensus 142 ~i~~g~~sly~a~t-~G~vlavt~~~~~~~~~w~~~~~~----------PiF~splcv~~sv~i~~Vd-G~l~~f~~sG~ 209 (354)
T KOG4649|consen 142 VIAPGDGSLYAAIT-AGAVLAVTKNPYSSTEFWAATRFG----------PIFASPLCVGSSVIITTVD-GVLTSFDESGR 209 (354)
T ss_pred eecCCCceEEEEec-cceEEEEccCCCCcceehhhhcCC----------ccccCceeccceEEEEEec-cEEEEEcCCCc
Confidence 3444 777898887 467777765432 2222211111 113333222 11 113 66666666667
Q ss_pred eEEEEECCCC
Q 024317 182 LIRQINLKPE 191 (269)
Q Consensus 182 ~I~~~~~~~~ 191 (269)
.||++...|.
T Consensus 210 qvwr~~t~Gp 219 (354)
T KOG4649|consen 210 QVWRPATKGP 219 (354)
T ss_pred EEEeecCCCc
Confidence 7887776665
No 299
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.12 E-value=6.2e+02 Score=24.34 Aligned_cols=106 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-------------ceEEEcCCCCEEEEeC
Q 024317 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-------------KSFAVDMKGNIYVADK 122 (269)
Q Consensus 56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-------------~giavd~~G~lyVaD~ 122 (269)
++.||+++..+ .|+.+| ..+|+..... ....| .++++ .++.+|+++.
T Consensus 69 ~g~vyv~s~~g-~v~AlD---a~TGk~lW~~---------------~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~ 128 (527)
T TIGR03075 69 DGVMYVTTSYS-RVYALD---AKTGKELWKY---------------DPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTL 128 (527)
T ss_pred CCEEEEECCCC-cEEEEE---CCCCceeeEe---------------cCCCCcccccccccccccccceE-ECCEEEEEcC
Q ss_pred CCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCC--CCEEEEEECC-----CCeEEEEECCCCeEE
Q 024317 123 SNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH--ICALLISDHG-----NQLIRQINLKPEDCS 194 (269)
Q Consensus 123 ~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~--~g~LyVaD~~-----n~~I~~~~~~~~~~~ 194 (269)
.+++..+|...-+.+....... ......+.-.|. ++.|||.... .+.|+.++.+.+...
T Consensus 129 -dg~l~ALDa~TGk~~W~~~~~~------------~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 129 -DARLVALDAKTGKVVWSKKNGD------------YKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred -CCEEEEEECCCCCEEeeccccc------------ccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
No 300
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=24.73 E-value=4.5e+02 Score=22.56 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCC
Q 024317 163 ELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGR 237 (269)
Q Consensus 163 gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~ 237 (269)
||.+-|..|.||-. ...++|+.+++.....+..+......- ....+.|+.+.+.- +|.|...+|+
T Consensus 31 GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~~~~a---------l~g~~~gvDFNP~aDRlRvvs~~Gq 96 (236)
T PF14339_consen 31 GIDFRPANGQLYGL-GSTGRLYTINPATGAATPVGASPLTVA---------LSGTAFGVDFNPAADRLRVVSNTGQ 96 (236)
T ss_pred EEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEeeccccccc---------ccCceEEEecCcccCcEEEEccCCc
No 301
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=24.70 E-value=5e+02 Score=23.09 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=18.4
Q ss_pred cceeeEEEecCCcEEEEcCCCCccccc
Q 024317 216 SCLVSLVIGFVARPYIIRHTGRLDPPL 242 (269)
Q Consensus 216 ~~p~gia~d~~g~lyVad~~g~~~~~~ 242 (269)
.+...|.++++++||+....|.++.-.
T Consensus 187 ~riq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp S-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred ceehhceecCCCCEEEEeCCcEEEEcc
Confidence 556788888889998888777777544
No 302
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.45 E-value=5.8e+02 Score=23.71 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=30.3
Q ss_pred EEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEE
Q 024317 118 YVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI 175 (269)
Q Consensus 118 yVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyV 175 (269)
||.|...--|.+|+.+|+ ....-....... .+.+.....=..=.++++++++..||-
T Consensus 159 ~igdefgP~l~~f~~~Gk~~~~~~~~~~~~~-~~~p~g~~~n~gfEglait~d~~~L~~ 216 (391)
T COG4222 159 WIGDEFGPYLLEFDANGKLVRVLEVPVRFLP-PDNPKGLRNNLGFEGLAITPDGKKLYA 216 (391)
T ss_pred ccccccCcceEEECCCCccccccccccccCc-CCCccccccccceeeEEecCCCceEEE
Confidence 788877788999999987 222221111111 111111110112357888887667763
No 303
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=24.32 E-value=5.9e+02 Score=23.82 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCE
Q 024317 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHV 126 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~ 126 (269)
.++++.+....+|.+-...+++..+|.+.. ..+.... ..+.-..-+.+++.+-+. |+-+=...++
T Consensus 231 eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~-------------~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 231 EDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHS-------------VKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ehhhccccchhhheeecCCCeEEEEEcCCC-CCCCccc-------------ccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 445555566777877777888888876421 1111110 011111235688887444 5555556788
Q ss_pred EEEEeCCcc----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317 127 IRKITNLGV----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP 190 (269)
Q Consensus 127 I~~~~~~g~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~ 190 (269)
|..+|.... .++-+.. ..-..|-.+|....++.+-...+|+.+++...
T Consensus 297 V~LwDlRnL~~~lh~~e~H~----------------dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 297 VALWDLRNLNKPLHTFEGHE----------------DEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred EEEeechhcccCceeccCCC----------------cceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 888885443 2222221 12246777888788888888888988888654
No 304
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=23.98 E-value=1.6e+02 Score=28.60 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=18.3
Q ss_pred CcceEEEecCCCeEEEEeCCCCEE
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAF 69 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I 69 (269)
-+..|.+.|.+|++||.-+.-+.+
T Consensus 52 ~~~~vtv~pG~G~v~v~t~P~t~~ 75 (579)
T COG1750 52 INISVTVTPGDGRVYVATFPYTQI 75 (579)
T ss_pred eeeeeeecCCCceEEeecCCCchh
Confidence 356677888889999997766655
No 305
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=23.11 E-value=3.6e+02 Score=25.24 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=25.6
Q ss_pred eEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317 162 FELTFVPHICALLISDHGNQLIRQINLKPE 191 (269)
Q Consensus 162 ~gia~~~~~g~LyVaD~~n~~I~~~~~~~~ 191 (269)
++|.++-|+..|||+..-.+-||+++....
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 677777777899999999999999998763
No 306
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=22.92 E-value=5.3e+02 Score=22.79 Aligned_cols=73 Identities=12% Similarity=0.007 Sum_probs=46.9
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEeCC--cceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 104 DKPKSFAVDMKGNIYVADKSNHVIRKITNL--GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~~--g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
+.-.+++...+|++.-+-+....|.+...+ +.....+--.. ...-...+...|. ..|+++-...+
T Consensus 106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~------------HtqDVK~V~WHPt-~dlL~S~SYDn 172 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE------------HTQDVKHVIWHPT-EDLLFSCSYDN 172 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc------------ccccccEEEEcCC-cceeEEeccCC
Confidence 445789999999977777766676665543 44332221111 1223356777887 67888888888
Q ss_pred eEEEEECC
Q 024317 182 LIRQINLK 189 (269)
Q Consensus 182 ~I~~~~~~ 189 (269)
.|+.+..+
T Consensus 173 TIk~~~~~ 180 (312)
T KOG0645|consen 173 TIKVYRDE 180 (312)
T ss_pred eEEEEeec
Confidence 88888766
No 307
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=22.86 E-value=4.8e+02 Score=22.25 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=12.5
Q ss_pred CCCCceEEEcCCCCEEEEe
Q 024317 103 FDKPKSFAVDMKGNIYVAD 121 (269)
Q Consensus 103 ~~~P~giavd~~G~lyVaD 121 (269)
-..|.++|++-+|-+-|.+
T Consensus 75 Tg~~lDlAI~G~GFF~V~~ 93 (238)
T PRK12690 75 TGGQFDFAIEGEGFFMVET 93 (238)
T ss_pred cCCceeEEECCCcEEEEEc
Confidence 3478888887666555544
No 308
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=22.83 E-value=1.8e+02 Score=17.52 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=19.1
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl 74 (269)
...+|++ .++.+||++..+ .+..+|.
T Consensus 3 ~a~~v~v--~g~yaYva~~~~-Gl~IvDI 28 (42)
T PF08309_consen 3 DARDVAV--SGNYAYVADGNN-GLVIVDI 28 (42)
T ss_pred eEEEEEE--ECCEEEEEeCCC-CEEEEEC
Confidence 3567888 589999998754 4667775
No 309
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.71 E-value=2.6e+02 Score=24.15 Aligned_cols=23 Identities=13% Similarity=0.058 Sum_probs=13.9
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCC
Q 024317 43 LEINPHSVIDRPGSSDLIVLDSSRS 67 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D~~~~ 67 (269)
.-.+|.++|+. .+| +|+....++
T Consensus 88 ~Tg~~lD~AI~-G~G-fF~V~~~~G 110 (260)
T PRK12694 88 QTGNSKDVAIN-GQG-FFQVLMPDG 110 (260)
T ss_pred eCCCcceEEEc-CCc-EEEEEcCCC
Confidence 34589999993 344 444444344
No 310
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=22.64 E-value=4.3e+02 Score=22.78 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=12.5
Q ss_pred CCCCcceEEEecCCCeEEEEe
Q 024317 43 LEINPHSVIDRPGSSDLIVLD 63 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D 63 (269)
.-.+|.++|+. .+|.+-|-+
T Consensus 80 ~Tg~~lDlAI~-G~GFF~V~~ 99 (253)
T PRK12689 80 QTKNPLDVAID-GDAFLAVQT 99 (253)
T ss_pred eCCCceeEEEC-CCcEEEEEe
Confidence 34589999994 345444443
No 311
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=22.62 E-value=7.3e+02 Score=24.22 Aligned_cols=135 Identities=11% Similarity=0.076 Sum_probs=70.9
Q ss_pred ceEEEecCCCeEEEEeCCC------CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC---ceEEEcCCCCEE
Q 024317 48 HSVIDRPGSSDLIVLDSSR------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP---KSFAVDMKGNIY 118 (269)
Q Consensus 48 ~giav~~~~g~lyV~D~~~------~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P---~giavd~~G~ly 118 (269)
.++++ .+|.|||+-..+ +.+.++|. ...+...++ .++.| .++++ -+|.||
T Consensus 326 ~~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~---~~~~W~~~a---------------~M~~~R~~~~v~~-l~g~iY 384 (571)
T KOG4441|consen 326 VGVAV--LNGKLYVVGGYDSGSDRLSSVERYDP---RTNQWTPVA---------------PMNTKRSDFGVAV-LDGKLY 384 (571)
T ss_pred ccEEE--ECCEEEEEccccCCCcccceEEEecC---CCCceeccC---------------CccCccccceeEE-ECCEEE
Confidence 55666 477888886544 45666653 222233221 23333 34555 488899
Q ss_pred EEeCCC-----CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC---C---CeEEE
Q 024317 119 VADKSN-----HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG---N---QLIRQ 185 (269)
Q Consensus 119 VaD~~n-----~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~---n---~~I~~ 185 (269)
+.=..+ +.|-++|+... ..++.-.. -..=.|++. -+|.||++-.. . +.+..
T Consensus 385 avGG~dg~~~l~svE~YDp~~~~W~~va~m~~--------------~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 385 AVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--------------RRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred EEeccccccccccEEEecCCCCcccccCCCCc--------------ceeeeEEEE--ECCEEEEEcCcCCCccccceEEE
Confidence 986543 24667777665 33322111 011124443 34899998652 2 45777
Q ss_pred EECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 186 INLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 186 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
+++..+.=.....- .. --.-.|+++- ++.||+.-
T Consensus 449 YDP~t~~W~~~~~M----~~---------~R~~~g~a~~-~~~iYvvG 482 (571)
T KOG4441|consen 449 YDPETNTWTLIAPM----NT---------RRSGFGVAVL-NGKIYVVG 482 (571)
T ss_pred EcCCCCceeecCCc----cc---------ccccceEEEE-CCEEEEEC
Confidence 77776654332211 10 0112345555 68888887
No 312
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=21.89 E-value=6.4e+02 Score=23.32 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=43.5
Q ss_pred CCceEEEcCCCC-EEEEeCCCC--EEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC
Q 024317 105 KPKSFAVDMKGN-IYVADKSNH--VIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG 179 (269)
Q Consensus 105 ~P~giavd~~G~-lyVaD~~n~--~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~ 179 (269)
.|..+.+..+.. +.|+|.... .+-.++.. +. ..+.|. +..-.+|+++++...|.-+|..
T Consensus 109 ~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGh----------------vSml~dVavS~D~~~IitaDRD 172 (390)
T KOG3914|consen 109 RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGH----------------VSMLLDVAVSPDDQFIITADRD 172 (390)
T ss_pred CcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhh----------------hhhhheeeecCCCCEEEEecCC
Confidence 566777766444 677775321 12222222 44 444443 5667899999997788888875
Q ss_pred CCeEEEEECCCCeE
Q 024317 180 NQLIRQINLKPEDC 193 (269)
Q Consensus 180 n~~I~~~~~~~~~~ 193 (269)
..||+........
T Consensus 173 -EkIRvs~ypa~f~ 185 (390)
T KOG3914|consen 173 -EKIRVSRYPATFV 185 (390)
T ss_pred -ceEEEEecCcccc
Confidence 5677776655433
No 313
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=21.56 E-value=5.3e+02 Score=22.29 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=39.1
Q ss_pred CCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC--EEEEeCCCCEE--EEE
Q 024317 55 GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNHVI--RKI 130 (269)
Q Consensus 55 ~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~--lyVaD~~n~~I--~~~ 130 (269)
-+|.+|..-.+.+.|.|+++. .+......-....++.+..+..-.=..=.++++|.+|. ||-++..++.| .++
T Consensus 76 ynGs~yynk~~t~~ivky~l~---~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skL 152 (249)
T KOG3545|consen 76 YNGSLYYNKAGTRNIIKYDLE---TRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKL 152 (249)
T ss_pred EcceEEeeccCCcceEEEEee---cceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeecc
Confidence 378889888888889999873 22111111111111111100000001115789988886 66665444433 577
Q ss_pred eCCc
Q 024317 131 TNLG 134 (269)
Q Consensus 131 ~~~g 134 (269)
|+..
T Consensus 153 dp~t 156 (249)
T KOG3545|consen 153 DPET 156 (249)
T ss_pred CHHH
Confidence 7743
No 314
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=21.20 E-value=3.4e+02 Score=19.86 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=32.7
Q ss_pred ceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCC-cc
Q 024317 161 DFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGR-LD 239 (269)
Q Consensus 161 P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~-~~ 239 (269)
+.-+.+..+ |+|++.|..+..|+.=...+ + ..+..+.+..+|++.+-+..+. +|
T Consensus 56 ~~~l~l~~d-GnLvl~~~~g~~vW~S~~~~-------------~-----------~~~~~~~L~ddGnlvl~~~~~~~~W 110 (116)
T cd00028 56 SCTLTLQSD-GNLVIYDGSGTVVWSSNTTR-------------V-----------NGNYVLVLLDDGNLVLYDSDGNFLW 110 (116)
T ss_pred CEEEEEecC-CCeEEEcCCCcEEEEecccC-------------C-----------CCceEEEEeCCCCEEEECCCCCEEE
Confidence 445777766 89999887655444311100 0 1234566777999988886544 44
Q ss_pred c
Q 024317 240 P 240 (269)
Q Consensus 240 ~ 240 (269)
+
T Consensus 111 ~ 111 (116)
T cd00028 111 Q 111 (116)
T ss_pred c
Confidence 4
No 315
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=20.91 E-value=3.5e+02 Score=23.48 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=12.7
Q ss_pred CCCCcceEEEecCCCeEEEEe
Q 024317 43 LEINPHSVIDRPGSSDLIVLD 63 (269)
Q Consensus 43 ~~~~P~giav~~~~g~lyV~D 63 (269)
.-.+|.++|+. .+|.+-|.+
T Consensus 88 ~Tg~~lDlAI~-G~GFF~V~~ 107 (264)
T PRK12816 88 ATGNKLDVAIE-GEGFFKILM 107 (264)
T ss_pred eCCCcceEEEC-CCcEEEEEc
Confidence 34589999994 345544444
No 316
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=20.71 E-value=6.2e+02 Score=22.74 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=72.2
Q ss_pred CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCC-cccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (269)
Q Consensus 46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g-~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n 124 (269)
.-..|.++|....+.-+-+..++|..+|.. ...|-+.+.--.. ..... -+...+.-..-+|+|..++|....+-.-.
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiR-rasgcf~~lD~hn~k~~p~-~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIR-RASGCFRVLDQHNTKRPPI-LKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEee-cccceeEEeecccCccCcc-ccccccccceeeeeeecccchhhhhccCc
Confidence 345566777777777777777888888764 2334444432111 00000 00011223344789999988733333346
Q ss_pred CEEEEEeC-CcceEEecCCCCCCCCCCCccccc-cccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEEec
Q 024317 125 HVIRKITN-LGVTTIAGGGSKKEGRADGPAQNA-SFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSKSS 197 (269)
Q Consensus 125 ~~I~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~-~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~~~ 197 (269)
+|++..+. .|+.+.-..+...-....+++..- +... .-..+.|..+.||+.... ..+|++++...+.+.+..
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s-~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~ 342 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDS-DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAA 342 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEeeccc-ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEe
Confidence 78888873 454211111100000000000000 1111 112334444677766654 457888888866555543
No 317
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=20.60 E-value=8.9e+02 Score=24.47 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=50.8
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccC-ceEEEEeCCC-----CEEEEEE
Q 024317 105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSN-DFELTFVPHI-----CALLISD 177 (269)
Q Consensus 105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~-P~gia~~~~~-----g~LyVaD 177 (269)
+-++-+...+|.++..-..|+.|..-+..|. +..+.++.+. +. .++|+.+|.. ..+-|+|
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~-------------Nspiwsi~~~p~sg~G~~di~aV~D 200 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS-------------NSPIWSICWNPSSGEGRNDILAVAD 200 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC-------------CCCceEEEecCCCCCCccceEEEEe
Confidence 3456677789999999999999999999888 5555543221 22 3577776642 2577888
Q ss_pred CCCCeEEEEECCCCeE
Q 024317 178 HGNQLIRQINLKPEDC 193 (269)
Q Consensus 178 ~~n~~I~~~~~~~~~~ 193 (269)
++ ..+..+++.|..+
T Consensus 201 W~-qTLSFy~LsG~~I 215 (1081)
T KOG1538|consen 201 WG-QTLSFYQLSGKQI 215 (1081)
T ss_pred cc-ceeEEEEecceee
Confidence 84 4566667776554
No 318
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=20.41 E-value=8.8e+02 Score=24.33 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=41.8
Q ss_pred eEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcE-EEEcCCCCccc
Q 024317 162 FELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARP-YIIRHTGRLDP 240 (269)
Q Consensus 162 ~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~l-yVad~~g~~~~ 240 (269)
..|-+.|..-+++.+-..+-.|..+++.......-... .-....+||..++|+. --...+|+++.
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g--------------HtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG--------------HTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc--------------CcCceeEEEECCCCcceeeeecCceEEE
Confidence 34555554344554445567788888765433221111 1144678899999944 34447777776
Q ss_pred cc-ccccccccCC
Q 024317 241 PL-QHDMEALPNQ 252 (269)
Q Consensus 241 ~~-~~~~~~~~~~ 252 (269)
+. +..-+.+.++
T Consensus 747 y~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 747 YEPRSREQPVYEG 759 (1012)
T ss_pred eCCCCCCCccccC
Confidence 66 4333333333
No 319
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=20.32 E-value=6.6e+02 Score=22.87 Aligned_cols=99 Identities=22% Similarity=0.280 Sum_probs=62.3
Q ss_pred ceEEEcCC-CCEEEEeCC-CCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317 107 KSFAVDMK-GNIYVADKS-NHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ 181 (269)
Q Consensus 107 ~giavd~~-G~lyVaD~~-n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~ 181 (269)
..-+.|.+ ++.|++=.+ -+.|+++|.... ..+.|.| ...+.|-+-|++-+|.++-...+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG----------------~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG----------------GSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC----------------ccchhhhcCCCCCcEEEEecCCc
Confidence 34455554 675555543 567888886432 4444443 23456777787678999999899
Q ss_pred eEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317 182 LIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR 233 (269)
Q Consensus 182 ~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad 233 (269)
.|+.++.........-+. ..|. -.....+.++.+|. |++.
T Consensus 159 svRlwnI~~~~Cv~VfGG--~egH---------rdeVLSvD~~~~gd-~i~S 198 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGG--VEGH---------RDEVLSVDFSLDGD-RIAS 198 (385)
T ss_pred eEEEEeccCCeEEEEecc--cccc---------cCcEEEEEEcCCCC-eeec
Confidence 999999998877664433 1121 13345677787887 4544
No 320
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=20.06 E-value=3.7e+02 Score=19.82 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=31.8
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEE
Q 024317 107 KSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQ 185 (269)
Q Consensus 107 ~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~ 185 (269)
.-+.+..+|+|.+.|..+..|..-+. -.+. -..+.-+.+..+ |+|.+.|..+..|+.
T Consensus 21 ~~L~l~~dGnLvl~~~~~~~iWss~~-----t~~~----------------~~~~~~~~L~~~-GNlvl~d~~~~~lW~ 77 (114)
T PF01453_consen 21 YTLILQSDGNLVLYDSNGSVIWSSNN-----TSGR----------------GNSGCYLVLQDD-GNLVLYDSSGNVLWQ 77 (114)
T ss_dssp EEEEEETTSEEEEEETTTEEEEE--S------TTS----------------S-SSEEEEEETT-SEEEEEETTSEEEEE
T ss_pred ccceECCCCeEEEEcCCCCEEEEecc-----cCCc----------------cccCeEEEEeCC-CCEEEEeecceEEEe
Confidence 44777789998888875322221100 0010 113445777766 999999965544443
No 321
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=20.03 E-value=39 Score=24.52 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCccccc-ccccccccCCCCCCchhhhhh
Q 024317 226 VARPYIIRHTGRLDPPL-QHDMEALPNQSGETSTDLLLR 263 (269)
Q Consensus 226 ~g~lyVad~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 263 (269)
.+++||.+.+|.+...- -.+-.-..||.-++++.++||
T Consensus 54 ~~RiYiVEPtG~~EdDPNvTdkkfPGNPTrSyRs~~Plr 92 (100)
T PF12120_consen 54 RGRIYIVEPTGPFEDDPNVTDKKFPGNPTRSYRSREPLR 92 (100)
T ss_dssp --EEEEEEESS--EE-GGGSSSSSSS-TT-EEEESS-EE
T ss_pred CCcEEEEccCCCcccCccccCCCCCCCCcceeecCCCeE
Confidence 46999999998887444 445556677777777777766
Done!