Query 024319
Match_columns 269
No_of_seqs 204 out of 1113
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 100.0 2.2E-33 4.8E-38 248.1 19.8 217 2-261 7-234 (237)
2 PF00335 Tetraspannin: Tetrasp 99.9 3.4E-24 7.3E-29 183.0 2.4 211 3-255 1-221 (221)
3 cd03154 TM4SF3_like_LEL Tetras 98.3 7.4E-07 1.6E-11 68.1 4.4 66 128-227 34-100 (100)
4 cd03163 TM4SF8_like_LEL Tetras 98.2 1.9E-06 4.2E-11 66.3 5.2 68 128-227 30-104 (105)
5 cd03161 TM4SF2_6_like_LEL Tetr 98.1 3.3E-06 7.2E-11 64.7 5.0 73 128-227 29-104 (104)
6 cd03164 CD53_like_LEL Tetraspa 98.1 5.9E-06 1.3E-10 61.4 5.9 58 128-231 29-86 (86)
7 cd03160 CD37_CD82_like_LEL Tet 98.1 2.8E-06 6.1E-11 66.8 4.1 77 128-227 33-116 (117)
8 cd03167 oculospanin_like_LEL T 98.1 4.8E-06 1E-10 66.1 4.8 38 128-173 29-76 (120)
9 cd03158 penumbra_like_LEL Tetr 98.0 5.8E-06 1.3E-10 65.3 4.6 39 127-173 28-76 (119)
10 cd03156 uroplakin_I_like_LEL T 98.0 5.6E-06 1.2E-10 64.3 3.8 39 128-174 32-79 (114)
11 cd03166 CD63_LEL Tetraspanin, 98.0 7.5E-06 1.6E-10 62.4 4.0 67 128-227 29-99 (99)
12 cd03155 CD151_like_LEL Tetrasp 98.0 1E-05 2.2E-10 62.7 4.5 69 128-227 32-110 (110)
13 cd03165 NET-5_like_LEL Tetrasp 97.9 1.2E-05 2.5E-10 61.0 3.9 66 128-227 31-98 (98)
14 cd03159 TM4SF9_like_LEL Tetras 97.9 1.5E-05 3.3E-10 63.1 4.5 37 128-172 29-77 (121)
15 cd03157 TM4SF12_like_LEL Tetra 97.9 2.9E-05 6.3E-10 60.2 5.9 42 128-177 32-75 (103)
16 cd03127 tetraspanin_LEL Tetras 97.8 4.3E-05 9.4E-10 56.3 5.0 37 127-172 28-64 (90)
17 cd03162 peripherin_like_LEL Te 97.8 2.7E-05 5.9E-10 63.9 4.1 76 128-226 34-142 (143)
18 cd03152 CD9_LEL Tetraspanin, e 97.7 1.2E-05 2.5E-10 59.8 1.1 28 129-170 32-59 (84)
19 cd03151 CD81_like_LEL Tetraspa 91.7 0.14 3.1E-06 37.8 2.4 31 128-169 31-61 (84)
20 PRK12585 putative monovalent c 85.5 8.1 0.00018 33.2 9.1 54 8-61 5-59 (197)
21 PF04156 IncA: IncA protein; 84.4 2.1 4.5E-05 36.3 5.2 20 10-29 6-25 (191)
22 PF05915 DUF872: Eukaryotic pr 82.5 3.1 6.8E-05 32.9 5.0 48 9-57 44-91 (115)
23 COG4993 Gcd Glucose dehydrogen 71.7 11 0.00023 38.2 6.3 65 8-83 3-67 (773)
24 PF07086 DUF1352: Protein of u 70.3 60 0.0013 27.9 9.9 80 8-91 40-120 (186)
25 PF11297 DUF3098: Protein of u 69.3 13 0.00028 26.7 4.7 23 11-33 6-28 (69)
26 PF03729 DUF308: Short repeat 68.4 33 0.00071 23.4 6.8 47 18-68 2-48 (72)
27 PF09323 DUF1980: Domain of un 67.5 13 0.00029 31.3 5.5 25 45-69 35-59 (182)
28 KOG4433 Tweety transmembrane/c 66.8 10 0.00023 37.0 5.0 43 42-84 209-252 (526)
29 PF04103 CD20: CD20-like famil 66.0 2 4.2E-05 34.5 0.0 68 14-83 5-72 (150)
30 PF08566 Pam17: Mitochondrial 65.3 84 0.0018 26.6 9.6 24 43-66 75-99 (173)
31 PF15050 SCIMP: SCIMP protein 63.2 13 0.00029 29.5 4.2 28 221-249 2-29 (133)
32 cd07912 Tweety_N N-terminal do 62.3 16 0.00035 35.2 5.5 42 42-83 208-250 (418)
33 PF10724 DUF2516: Protein of u 59.0 51 0.0011 25.4 6.7 28 6-33 3-30 (100)
34 PF11384 DUF3188: Protein of u 57.9 21 0.00046 23.8 3.8 21 39-59 22-42 (49)
35 PRK12660 putative monovalent c 56.9 59 0.0013 25.5 6.9 49 12-62 2-51 (114)
36 PF11127 DUF2892: Protein of u 54.4 43 0.00094 23.1 5.3 41 16-63 14-54 (66)
37 PF05454 DAG1: Dystroglycan (D 53.3 4.4 9.6E-05 37.1 0.0 35 224-258 142-176 (290)
38 COG3247 HdeD Uncharacterized c 53.1 49 0.0011 28.3 6.3 51 14-68 21-71 (185)
39 KOG4054 Uncharacterized conser 52.1 1.5E+02 0.0032 25.2 9.0 79 8-89 40-118 (183)
40 PF02439 Adeno_E3_CR2: Adenovi 50.6 36 0.00079 21.5 3.8 22 230-251 9-30 (38)
41 PRK07946 putative monovalent c 50.2 39 0.00085 28.4 5.1 49 11-60 3-51 (163)
42 PRK12586 putative monovalent c 49.6 1.5E+02 0.0032 24.4 9.5 32 3-34 3-34 (145)
43 PF06341 DUF1056: Protein of u 49.0 92 0.002 21.9 6.3 46 4-58 7-52 (63)
44 PRK08389 putative monovalent c 48.9 1.3E+02 0.0028 23.5 8.5 49 14-62 4-52 (114)
45 KOG4753 Predicted membrane pro 48.1 9.6 0.00021 30.2 1.1 13 46-58 58-70 (124)
46 PF06770 Arif-1: Actin-rearran 47.1 1.3E+02 0.0028 26.1 7.9 52 14-65 4-64 (196)
47 PF09925 DUF2157: Predicted me 46.3 1.4E+02 0.0031 23.9 8.0 24 10-33 31-54 (145)
48 PF11381 DUF3185: Protein of u 43.7 14 0.00031 25.6 1.4 15 45-59 44-58 (59)
49 PF15176 LRR19-TM: Leucine-ric 41.7 45 0.00098 25.7 3.9 41 224-264 14-55 (102)
50 PF06772 LtrA: Bacterial low t 41.0 2.3E+02 0.0049 26.3 9.4 54 13-66 256-309 (354)
51 PF05374 Mu-conotoxin: Mu-Cono 40.4 14 0.00029 20.3 0.6 9 169-177 3-11 (22)
52 PF02439 Adeno_E3_CR2: Adenovi 40.1 59 0.0013 20.5 3.5 31 229-259 5-35 (38)
53 PRK10209 acid-resistance membr 40.1 1.6E+02 0.0034 25.0 7.5 49 14-66 23-71 (190)
54 PRK12659 putative monovalent c 40.1 1.8E+02 0.004 22.8 8.4 48 12-60 2-49 (117)
55 PF01102 Glycophorin_A: Glycop 37.9 55 0.0012 26.1 4.0 14 245-258 82-95 (122)
56 PF04156 IncA: IncA protein; 37.8 1.1E+02 0.0024 25.6 6.2 15 45-59 11-25 (191)
57 PF15345 TMEM51: Transmembrane 36.7 42 0.00091 29.7 3.5 19 43-61 62-80 (233)
58 PF11694 DUF3290: Protein of u 36.1 81 0.0018 26.0 4.9 42 221-262 6-47 (149)
59 PTZ00370 STEVOR; Provisional 35.7 49 0.0011 30.3 3.8 24 238-261 265-288 (296)
60 TIGR01478 STEVOR variant surfa 35.4 48 0.001 30.4 3.7 24 238-261 269-292 (295)
61 TIGR00941 2a6301s03 Multicompo 35.3 1E+02 0.0022 23.9 5.1 47 12-59 2-48 (104)
62 PRK02935 hypothetical protein; 35.0 1.7E+02 0.0036 22.8 6.1 29 43-76 17-45 (110)
63 PF04906 Tweety: Tweety; Inte 34.7 14 0.0003 35.5 0.2 34 50-83 194-227 (406)
64 PF15125 TMEM238: TMEM238 prot 33.3 1.7E+02 0.0037 20.7 5.4 44 9-60 7-50 (65)
65 PF02932 Neur_chan_memb: Neuro 32.4 1.6E+02 0.0034 23.5 6.3 32 65-96 52-83 (237)
66 PHA02680 ORF090 IMV phosphoryl 32.3 68 0.0015 24.1 3.4 34 214-247 25-65 (91)
67 PF15048 OSTbeta: Organic solu 32.2 60 0.0013 26.0 3.4 23 5-27 36-58 (125)
68 PF14387 DUF4418: Domain of un 31.3 2.7E+02 0.0058 22.2 7.6 46 17-62 43-90 (124)
69 PF00558 Vpu: Vpu protein; In 31.2 62 0.0013 24.0 3.1 34 227-260 4-38 (81)
70 COG2245 Predicted membrane pro 30.3 3.4E+02 0.0075 23.1 9.2 46 14-60 29-76 (182)
71 PF13572 DUF4134: Domain of un 30.2 2.5E+02 0.0054 21.4 6.6 16 6-21 39-54 (98)
72 PF11023 DUF2614: Protein of u 29.9 1.8E+02 0.0039 22.9 5.6 28 43-75 16-43 (114)
73 PRK08600 putative monovalent c 29.1 1.3E+02 0.0029 23.6 4.9 47 13-60 3-49 (113)
74 KOG3658 Tumor necrosis factor- 29.1 67 0.0015 32.9 3.9 34 217-252 673-706 (764)
75 PF05767 Pox_A14: Poxvirus vir 29.0 73 0.0016 24.1 3.2 23 226-248 43-65 (92)
76 PF09972 DUF2207: Predicted me 29.0 80 0.0017 30.2 4.4 16 45-60 400-415 (511)
77 PF12877 DUF3827: Domain of un 28.9 31 0.00066 35.1 1.5 34 225-258 267-300 (684)
78 PF12805 FUSC-like: FUSC-like 28.9 2.8E+02 0.006 24.9 7.7 14 49-62 31-44 (284)
79 PF06195 DUF996: Protein of un 28.2 2.6E+02 0.0056 22.6 6.6 19 15-33 2-20 (139)
80 PHA02898 virion envelope prote 28.0 66 0.0014 24.2 2.8 24 225-248 42-65 (92)
81 PF06749 DUF1218: Protein of u 27.5 1.3E+02 0.0028 22.7 4.5 28 5-32 37-64 (97)
82 PF13706 PepSY_TM_3: PepSY-ass 26.8 65 0.0014 19.8 2.2 22 45-66 12-33 (37)
83 PRK12658 putative monovalent c 26.7 1.2E+02 0.0026 24.3 4.3 48 12-60 2-49 (125)
84 COG3374 Predicted membrane pro 26.5 1.4E+02 0.003 25.8 4.8 20 41-60 43-62 (197)
85 PF11239 DUF3040: Protein of u 25.7 2.5E+02 0.0055 20.3 5.7 15 14-28 47-61 (82)
86 PF15471 TMEM171: Transmembran 25.5 66 0.0014 29.3 2.8 22 7-28 23-44 (319)
87 PF04854 DUF624: Protein of un 25.5 67 0.0014 22.7 2.4 20 9-28 2-24 (77)
88 KOG4812 Golgi-associated prote 25.3 1.6E+02 0.0035 26.4 5.2 25 41-65 225-249 (262)
89 PF05393 Hum_adeno_E3A: Human 24.8 1.1E+02 0.0025 23.0 3.5 26 234-259 39-64 (94)
90 PF03142 Chitin_synth_2: Chiti 24.6 5.1E+02 0.011 26.0 9.1 19 11-29 401-419 (527)
91 PF14979 TMEM52: Transmembrane 24.3 1.7E+02 0.0036 24.2 4.7 32 227-258 19-50 (154)
92 PF13630 SdpI: SdpI/YhfL prote 24.1 2.5E+02 0.0054 19.4 5.8 17 43-59 32-48 (76)
93 PF14340 DUF4395: Domain of un 24.1 1.1E+02 0.0024 24.5 3.7 29 229-257 101-130 (131)
94 PF06168 DUF981: Protein of un 24.1 4.7E+02 0.01 22.5 9.0 49 13-61 43-93 (191)
95 PRK05715 NADH:ubiquinone oxido 23.8 3.1E+02 0.0068 20.4 6.8 73 16-94 8-81 (100)
96 PRK09094 putative monovalent c 23.8 1.8E+02 0.0039 22.9 4.7 46 13-59 3-48 (114)
97 CHL00015 ndhE NADH dehydrogena 23.8 3.2E+02 0.007 20.6 6.8 74 17-94 8-82 (101)
98 PF09971 DUF2206: Predicted me 23.3 4.1E+02 0.0089 25.2 7.9 27 70-98 217-243 (367)
99 PF06724 DUF1206: Domain of Un 23.2 79 0.0017 22.3 2.4 21 12-32 47-67 (73)
100 PF03779 SPW: SPW repeat; Int 22.8 2E+02 0.0044 19.1 4.2 35 23-57 6-43 (51)
101 PF09788 Tmemb_55A: Transmembr 22.5 1.2E+02 0.0026 27.3 3.9 47 13-59 199-245 (256)
102 COG2149 Predicted membrane pro 22.5 2.8E+02 0.006 22.1 5.4 12 45-56 63-74 (120)
103 PF13903 Claudin_2: PMP-22/EMP 22.3 3E+02 0.0064 21.8 6.1 29 45-73 74-103 (172)
104 PRK10263 DNA translocase FtsK; 22.2 6.9E+02 0.015 28.1 10.1 26 4-30 72-97 (1355)
105 PF06781 UPF0233: Uncharacteri 22.0 2.1E+02 0.0046 21.4 4.6 13 46-58 69-81 (87)
106 PF13980 UPF0370: Uncharacteri 20.9 1.1E+02 0.0024 21.2 2.6 18 221-238 2-19 (63)
107 PF12666 PrgI: PrgI family pro 20.9 2E+02 0.0042 21.1 4.3 11 88-98 59-69 (93)
108 PF13908 Shisa: Wnt and FGF in 20.4 42 0.00091 28.1 0.6 7 128-134 12-18 (179)
109 PF05478 Prominin: Prominin; 20.1 1.4E+02 0.0031 31.2 4.5 29 68-96 136-164 (806)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=248.10 Aligned_cols=217 Identities=18% Similarity=0.286 Sum_probs=164.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccch-----hh--hhHHHHHHHHHHHHHHhhhhhhhccchhhHHHH
Q 024319 2 GVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIH-----LF--RWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFY 74 (269)
Q Consensus 2 ~~~k~~l~~~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~-----~~--~~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y 74 (269)
++.||+++++|+++|++|++++++|+|+..++.. ... +. .+.+|++|++++++|++||+||.|||+|+|.+|
T Consensus 7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~-~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y 85 (237)
T KOG3882|consen 7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGF-LSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSY 85 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccc-hhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHH
Confidence 5899999999999999999999999999988642 112 11 233899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhheeecCCCcccccCcchhhhhhhhhhHHHhhhccCc---cchHHHHhhhhcCCcccccccCC
Q 024319 75 LCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVDS---KNWNKIRACLADTDTCSKLSQQY 151 (269)
Q Consensus 75 ~~~l~ll~~~el~~~i~~~~~~~~~~~~~~~~~~~~~y~~~~~~~wl~~~~~~~---~~W~~iq~cl~~~~~Ccg~~~~~ 151 (269)
++++++++++|+++++++++++++..... ++ +..++-.+.+-+++ +.||.+|. +++|||.++
T Consensus 86 ~~~l~l~~i~e~~~~i~~~~~~~~l~~~~------~~---~~~~~~~~~y~~~~~~~~~~d~~Q~----~~~CCG~~~-- 150 (237)
T KOG3882|consen 86 FILLLLLFIAELAAGILAFVFRDSLRDEL------EE---QLLKSIWNNYSSDPDLGEAWDKLQR----ELKCCGVNG-- 150 (237)
T ss_pred HHHHHHHHHHHHHHHHHhheeHHHHHHHH------HH---HHHHHHHHHhCCCccHHHHHHHHHH----hccCCcCCC--
Confidence 99999999999999999999877643211 10 11111111121122 47999875 899999986
Q ss_pred CChhhhhhhcCCccCccccCCCCC-CCCcCCCCccccCCCCCCCCCCCCCccccCccccccCcchHHHHHHHHHHhhHHH
Q 024319 152 VTADQFFSAHISPLQARCCKPPTI-CGFSYVNPTLWLNPVNPTGDPDCFLWSNDQSQLCYNCSSCKAGLLGNLRNEWRKA 230 (269)
Q Consensus 152 ~~~~d~~~~~~~~vp~sCC~~p~~-Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~~lCy~c~~Ck~~i~~~l~~~~~~i 230 (269)
+.||......++|+|||++... ... .+.+.. ...+||.+++.++++++...+
T Consensus 151 --~~~~~~~~~~~vP~SCC~~~~~~~~~---------------~~~~~~----------~~~~GC~~~~~~~~~~~~~~i 203 (237)
T KOG3882|consen 151 --YSDYFNCSSNNVPPSCCKRTRRQKFP---------------QDVPDN----------IYTEGCLEKLSSWLESNLLII 203 (237)
T ss_pred --chHHhcCCCCCCCcccCCCccccccc---------------ccchhh----------hhccccHHHHHHHHHHhhHHH
Confidence 4788654332299999987111 000 000001 124788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhhh
Q 024319 231 NIILIVAVVILIWVYLIACSAFKNAQTEDLF 261 (269)
Q Consensus 231 ~~~~i~v~~~~i~~~~~ac~l~r~~~~~~~~ 261 (269)
++++++++++|++++++|+++.+.+++.+..
T Consensus 204 ~~~~~~i~~~~~~~~~~a~~l~~~i~~~~~~ 234 (237)
T KOG3882|consen 204 GGVGLGIAVLELLGMILACCLANAIRNQRDR 234 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999998887633
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.89 E-value=3.4e-24 Score=182.96 Aligned_cols=211 Identities=24% Similarity=0.377 Sum_probs=36.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCc-----cchhhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHH
Q 024319 3 VSNNITAVLNFIALLCSIPIIASGIWLAS-KPDNE-----CIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLC 76 (269)
Q Consensus 3 ~~k~~l~~~n~l~~l~G~~ll~~Gi~~~~-~~~~~-----~~~~~~~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~ 76 (269)
|+|+++.++|++++++|++++++|+|+.. ....+ ........++.+|+++++++++|++|+.+||++++..|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 67999999999999999999999999942 21111 1111223367799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhheeecCCCcccccCcchhhhhhhhhhHHHhhhc----cCccchHHHHhhhhcCCcccccccCCC
Q 024319 77 VMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHV----VDSKNWNKIRACLADTDTCSKLSQQYV 152 (269)
Q Consensus 77 ~l~ll~~~el~~~i~~~~~~~~~~~~~~~~~~~~~y~~~~~~~wl~~~~----~~~~~W~~iq~cl~~~~~Ccg~~~~~~ 152 (269)
++++++++|+++++.++.++++.... .+ ++++.+.++.. ...+.||.+| ++++|||.++
T Consensus 81 ~~~~~~v~~~~~~i~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~iq----~~~~CCG~~~--- 143 (221)
T PF00335_consen 81 LLILLFVLELVVGIVAFSYRDQLNSS------LK----DGLSLRCMKSYNSNESFSEAWDNIQ----EKFECCGVNS--- 143 (221)
T ss_dssp -------------------HHHHHHH------HH----HHHHHHHHHSSTT-CHHHHHHHHHH----HHHT--SSTT---
T ss_pred chhhHHHHHHHHHHhhhhcccccccc------cc----ccccchhhhccccccchhhheeccc----ccccccCCCC---
Confidence 99999999999999999986642111 00 00001111111 2345566665 5899999876
Q ss_pred ChhhhhhhcCCccCccccCCCCCCCCcCCCCccccCCCCCCCCCCCCCccccCccccccCcchHHHHHHHHHHhhHHHHH
Q 024319 153 TADQFFSAHISPLQARCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQSQLCYNCSSCKAGLLGNLRNEWRKANI 232 (269)
Q Consensus 153 ~~~d~~~~~~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~~lCy~c~~Ck~~i~~~l~~~~~~i~~ 232 (269)
+.||......+ +++...++. + ..+..+.+......+||++++.++++++...+++
T Consensus 144 -~~d~~~~~~~~-~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~gC~~~l~~~~~~~~~~~~~ 198 (221)
T PF00335_consen 144 -PDDWFTSKWSS-CSSPDSCPD-C----------------------QCPDDCSSENSIYTRGCYDKLREYLRSYLKYIGI 198 (221)
T ss_dssp -CHHHHHHHHHT-----------T----------------------CS-TTCCCCHCCTST-HHHHHHHHHCT-------
T ss_pred -Ccccccccccc-ccccccccc-c----------------------cccccccccccccCCChHHHHHHHHHHHHHHHHH
Confidence 67775432111 111100000 0 0011111113345689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 024319 233 ILIVAVVILIWVYLIACSAFKNA 255 (269)
Q Consensus 233 ~~i~v~~~~i~~~~~ac~l~r~~ 255 (269)
++++++++|++++++++++.|++
T Consensus 199 ~~~~~~~l~~~~~~~a~~l~~~~ 221 (221)
T PF00335_consen 199 VSLAILVLQLIGIILACCLCRHI 221 (221)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999998864
No 3
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=98.31 E-value=7.4e-07 Score=68.09 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=40.2
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhcCCccCcccc-CCCCCCCCcCCCCccccCCCCCCCCCCCCCccccCc
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQARCC-KPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQS 206 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC-~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~ 206 (269)
++.||.+|. +++|||.++ +.||+. ..+|.||| .++..|+.. + .+.. .+
T Consensus 34 ~~~~d~lQ~----~l~CCG~~~----~~d~~~---~~vP~SCcc~~~~~c~~~--~--------------~~~~-~~--- 82 (100)
T cd03154 34 KKSLEKFQK----ELKCCGLVN----GADDWG---NDIPASCNCTTTQSDCVV--A--------------YYGG-SN--- 82 (100)
T ss_pred HHHHHHHHH----cCCCCCCCC----chhhcc---CCCCCCCcCCCCCCCccc--c--------------cCCC-cC---
Confidence 467888875 899999875 344432 36899995 344445310 0 0000 01
Q ss_pred cccccCcchHHHHHHHHHHhh
Q 024319 207 QLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 207 ~lCy~c~~Ck~~i~~~l~~~~ 227 (269)
+.-+||..++.++++++.
T Consensus 83 ---~~~~GC~~~i~~~~~~~~ 100 (100)
T cd03154 83 ---VYKEPCISKIKDFLKKNL 100 (100)
T ss_pred ---ccccccHHHHHHHHHhhC
Confidence 112578899999999873
No 4
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=98.23 E-value=1.9e-06 Score=66.34 Aligned_cols=68 Identities=18% Similarity=0.334 Sum_probs=43.4
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhc------CCccCccccCCCC-CCCCcCCCCccccCCCCCCCCCCCCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH------ISPLQARCCKPPT-ICGFSYVNPTLWLNPVNPTGDPDCFL 200 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~------~~~vp~sCC~~p~-~Cg~~~~n~t~w~~~~~~~~~~dC~~ 200 (269)
+..||.+|. .++|||.++ +.||.... ..+||.|||..+. .|+-....
T Consensus 30 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~vP~SCC~~~~~~C~~~~~~------------------ 83 (105)
T cd03163 30 SRAVDYLQR----QLQCCGIHN----YTDWENTPWFKESKNNSVPLSCCKETFTSCTGSLTQ------------------ 83 (105)
T ss_pred HHHHHHHHH----hCcccCCCC----HHHHhhchhhhcCCCCccCcCccCCCCCCcccCCCC------------------
Confidence 578888875 899999876 67774210 2469999996542 46321000
Q ss_pred ccccCccccccCcchHHHHHHHHHHhh
Q 024319 201 WSNDQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 201 ~~n~~~~lCy~c~~Ck~~i~~~l~~~~ 227 (269)
..+ -| -+||..++.++++++.
T Consensus 84 ~~~-----i~-~~GC~~~~~~~~~~~~ 104 (105)
T cd03163 84 PKD-----LY-QEGCEAKLVKKLQEVM 104 (105)
T ss_pred CCc-----hh-hhccHHHHHHHHHHHh
Confidence 000 01 1588899999999874
No 5
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=98.15 E-value=3.3e-06 Score=64.69 Aligned_cols=73 Identities=12% Similarity=0.264 Sum_probs=45.2
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhc---CCccCccccCCCCCCCCcCCCCccccCCCCCCCCCCCCCcccc
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH---ISPLQARCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSND 204 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~---~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~ 204 (269)
+..||.+|. .++|||.++ +.||.... ..++|.|||+....|+....+. +. . ...+
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~vP~SCC~~~~~C~~~~~~~-----~~----~----~~~~- 86 (104)
T cd03161 29 SDAVDTVQR----TLHCCGVEN----YTDWLNSPYFLEKGIPLSCCKNRSDCSPQDLKN-----LT----K----AATK- 86 (104)
T ss_pred HHHHHHHHh----cCcCcCCCC----hhhhhccccccCCCcCcccccCCCCCCcccccc-----cc----c----cccc-
Confidence 457888875 899999875 67775321 2369999998665675421100 00 0 0001
Q ss_pred CccccccCcchHHHHHHHHHHhh
Q 024319 205 QSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 205 ~~~lCy~c~~Ck~~i~~~l~~~~ 227 (269)
. | -+||..++.++++++.
T Consensus 87 ---i-~-~~GC~~~~~~~~~~n~ 104 (104)
T cd03161 87 ---V-Y-QQGCFTLVTSFMEANM 104 (104)
T ss_pred ---c-c-hhccHHHHHHHHHHhC
Confidence 1 1 1688899999999863
No 6
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=98.13 E-value=5.9e-06 Score=61.39 Aligned_cols=58 Identities=16% Similarity=0.369 Sum_probs=43.3
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhcCCccCccccCCCCCCCCcCCCCccccCCCCCCCCCCCCCccccCcc
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQARCCKPPTICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQSQ 207 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC~~p~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~~~ 207 (269)
+..||.+|. +++|||.++ +.||. ..+|+|||+.+ | ..+
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~----~~Dw~----~~vP~SCC~~~--~----------------------~~~------ 66 (86)
T cd03164 29 SEAWDMIQS----NLQCCGING----TTDWG----SGVPSSCCSSD--T----------------------EYK------ 66 (86)
T ss_pred HHHHHHHHH----HhcCCCCCC----hhhhC----CCCChhhcCCC--C----------------------ccc------
Confidence 567888875 899999875 77883 36899998531 1 011
Q ss_pred ccccCcchHHHHHHHHHHhhHHHH
Q 024319 208 LCYNCSSCKAGLLGNLRNEWRKAN 231 (269)
Q Consensus 208 lCy~c~~Ck~~i~~~l~~~~~~i~ 231 (269)
-+||..++.++++++..++|
T Consensus 67 ----~~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 67 ----VEGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred ----cccHHHHHHHHHHHHHHHhC
Confidence 15888999999999998775
No 7
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=98.11 E-value=2.8e-06 Score=66.76 Aligned_cols=77 Identities=12% Similarity=0.218 Sum_probs=43.8
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhc------CCccCccccCCCCC-CCCcCCCCccccCCCCCCCCCCCCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH------ISPLQARCCKPPTI-CGFSYVNPTLWLNPVNPTGDPDCFL 200 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~------~~~vp~sCC~~p~~-Cg~~~~n~t~w~~~~~~~~~~dC~~ 200 (269)
+..||.+|. .++|||.++ +.||.... ..+||.|||.+... ++.. ....+|..
T Consensus 33 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~vP~SCC~~~~~~~~~~-------------~~~~~C~~ 91 (117)
T cd03160 33 EEAWDYVQF----QLQCCGWTG----PQDWTDNSLIKNSSEPLYPCSCCNSSATADSPR-------------PSKGFCEA 91 (117)
T ss_pred HHHHHHHHh----hCcccCCCC----chhHHhchhccCCCCCCCCHhhhcCCccccccC-------------CCCcccCC
Confidence 457888874 899999876 66774211 12699999975421 1110 01122421
Q ss_pred ccccCccccccCcchHHHHHHHHHHhh
Q 024319 201 WSNDQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 201 ~~n~~~~lCy~c~~Ck~~i~~~l~~~~ 227 (269)
-..... .-| -.||..++.++++++.
T Consensus 92 ~~~~~~-~iy-~~GC~~~l~~~~~~n~ 116 (117)
T cd03160 92 PASLDW-PVY-QEGCMEKLQSWLNENL 116 (117)
T ss_pred CCcccc-chH-HHhhHHHHHHHHHHhc
Confidence 110000 012 2588899999999875
No 8
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=98.08 E-value=4.8e-06 Score=66.12 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=26.7
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhh-c---------CCccCccccCCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSA-H---------ISPLQARCCKPP 173 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~-~---------~~~vp~sCC~~p 173 (269)
+..||.+|. .++|||.++ +.||... . ..+||.|||+++
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~ 76 (120)
T cd03167 29 RFLIDQVQL----GLQCCGASS----YQDWQQNLYFNCSSPGVQACSLPASCCIDP 76 (120)
T ss_pred HHHHHHHHH----hccCCCCCC----hHHhcccccccCCCCCCCCCCCCcCccCCC
Confidence 457999875 899999886 5666421 1 125999999754
No 9
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=98.04 E-value=5.8e-06 Score=65.34 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=26.9
Q ss_pred CccchHHHHhhhhcCCcccccccCCCChhhhhhh----------cCCccCccccCCC
Q 024319 127 DSKNWNKIRACLADTDTCSKLSQQYVTADQFFSA----------HISPLQARCCKPP 173 (269)
Q Consensus 127 ~~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~----------~~~~vp~sCC~~p 173 (269)
.+..||.+|. .++|||+++ +.||... ...+||.|||++.
T Consensus 28 ~~~~~d~lQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~ 76 (119)
T cd03158 28 LQNIIDFVQK----EFKCCGGDD----YRDWSKNMYFNCSSPNPEACGVPYSCCIRA 76 (119)
T ss_pred HHHHHHHHHH----HccCCCCCC----hhhcccccccccCCCCCcCCCcCcCcccCC
Confidence 3567888875 899999886 5566411 0125999999754
No 10
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=98.01 E-value=5.6e-06 Score=64.27 Aligned_cols=39 Identities=23% Similarity=0.623 Sum_probs=28.8
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhh---------cCCccCccccCCCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSA---------HISPLQARCCKPPT 174 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~---------~~~~vp~sCC~~p~ 174 (269)
+..||.+|. .++|||+++ +.||... ...++|.|||+++.
T Consensus 32 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~~vP~SCC~~~~ 79 (114)
T cd03156 32 TSTWNRVMI----ELKCCGVNG----PTDFVDSTSFFRQKNEPNSPYPESCCKRNS 79 (114)
T ss_pred HHHHHHHHh----cccCcCCCC----cHHHHhhhHHhccCCCCCCcCCHHHcCccc
Confidence 567999875 899999886 6677432 23579999997543
No 11
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=97.98 E-value=7.5e-06 Score=62.35 Aligned_cols=67 Identities=13% Similarity=0.317 Sum_probs=43.1
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhh---cCCccCccccCCC-CCCCCcCCCCccccCCCCCCCCCCCCCccc
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSA---HISPLQARCCKPP-TICGFSYVNPTLWLNPVNPTGDPDCFLWSN 203 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~---~~~~vp~sCC~~p-~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n 203 (269)
+..||.+|. .++|||+++ +.||... ...++|.|||..+ ..|+.... . .+
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~vP~SCC~~~~~~C~~~~~-~------------------~~ 81 (99)
T cd03166 29 RKILDRMQK----DLKCCGANN----YTDWENIPSLDTDSVPDSCCINVTKGCGINFD-E------------------KV 81 (99)
T ss_pred HHHHHHHHH----HhcccCCCC----hhhhhcccCCCCCCCCcCccCcCCCCcccCCC-c------------------cc
Confidence 567999875 899999886 6677532 1246999999643 34532100 0 00
Q ss_pred cCccccccCcchHHHHHHHHHHhh
Q 024319 204 DQSQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 204 ~~~~lCy~c~~Ck~~i~~~l~~~~ 227 (269)
-| -+||..++.++++++.
T Consensus 82 -----~y-~~GC~~~~~~~~~~~~ 99 (99)
T cd03166 82 -----IH-LEGCVTKIEGWLKKNI 99 (99)
T ss_pred -----hH-HhcCHHHHHHHHHHhC
Confidence 01 1588899999999863
No 12
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=97.96 E-value=1e-05 Score=62.74 Aligned_cols=69 Identities=19% Similarity=0.338 Sum_probs=42.6
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhc--------CCccCccccCCCC-CCCCcCCCCccccCCCCCCCCCCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH--------ISPLQARCCKPPT-ICGFSYVNPTLWLNPVNPTGDPDC 198 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~--------~~~vp~sCC~~p~-~Cg~~~~n~t~w~~~~~~~~~~dC 198 (269)
+..||.+|. .++|||.++ +.||.... ...||.|||+... .|+.....+
T Consensus 32 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~~~~~~~~~~~~~~vP~SCC~~~~~~c~~~~~~~--------------- 88 (110)
T cd03155 32 TLTVDELQQ----EFKCCGSNN----YTDWQDSEWINSNEANGRLVPDSCCKTVVDRCGCLRDHP--------------- 88 (110)
T ss_pred HHHHHHHHH----hCcCcCCCC----hhhhhhccccccCCCCCCCCCccccCCCCCCcccccCCh---------------
Confidence 567888875 899999886 67775321 1369999997532 353100000
Q ss_pred CCccccCcccccc-CcchHHHHHHHHHHhh
Q 024319 199 FLWSNDQSQLCYN-CSSCKAGLLGNLRNEW 227 (269)
Q Consensus 199 ~~~~n~~~~lCy~-c~~Ck~~i~~~l~~~~ 227 (269)
.+ -|. -.||..++.+++++++
T Consensus 89 ---~~-----~~~~~~GC~~~~~~~~~~~~ 110 (110)
T cd03155 89 ---SN-----IYKVEGGCIPKLEDFLYDHL 110 (110)
T ss_pred ---hc-----cccccCChHHHHHHHHHHhC
Confidence 00 111 1478899999999873
No 13
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=97.90 E-value=1.2e-05 Score=61.02 Aligned_cols=66 Identities=14% Similarity=0.421 Sum_probs=43.0
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhh-cCCccCccccCCC-CCCCCcCCCCccccCCCCCCCCCCCCCccccC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSA-HISPLQARCCKPP-TICGFSYVNPTLWLNPVNPTGDPDCFLWSNDQ 205 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~-~~~~vp~sCC~~p-~~Cg~~~~n~t~w~~~~~~~~~~dC~~~~n~~ 205 (269)
+..||.+|. .++|||.++ +.||... ....+|.|||++. ..|+.. . . .+
T Consensus 31 ~~~~d~~Q~----~l~CCG~~~----~~Dw~~~~~~~~vP~SCC~~~~~~C~~~---~-------------~----~~-- 80 (98)
T cd03165 31 TNAWDITQT----EFRCCGVTN----YTDWYEVLGENRVPDSCCQEDSQDCGRN---P-------------T----EL-- 80 (98)
T ss_pred HHHHHHHHH----hCcCcCCCC----hhHHHHhcCCCCCCHhhcCCCccccccC---C-------------c----cc--
Confidence 457888875 899999876 6788532 1246899999643 245311 0 0 00
Q ss_pred ccccccCcchHHHHHHHHHHhh
Q 024319 206 SQLCYNCSSCKAGLLGNLRNEW 227 (269)
Q Consensus 206 ~~lCy~c~~Ck~~i~~~l~~~~ 227 (269)
. | -+||..++.++++++.
T Consensus 81 --~-~-~~GC~~~~~~~~~~~~ 98 (98)
T cd03165 81 --W-W-KTGCYEKVQQWLVDNL 98 (98)
T ss_pred --h-H-HhhhHHHHHHHHHhcC
Confidence 0 1 1688899999999863
No 14
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=97.89 E-value=1.5e-05 Score=63.09 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=26.4
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhc------------CCccCccccCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH------------ISPLQARCCKP 172 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~------------~~~vp~sCC~~ 172 (269)
+..||.+|. .++|||.++ +.||.... ..+||.|||.+
T Consensus 29 ~~~~D~iQ~----~l~CCG~~~----~~DW~~~~~~~~~~~~~~~~~~~vP~SCC~~ 77 (121)
T cd03159 29 QNLIDFLQE----YWQCCGARG----PDDWNLNIYFNCTDSNPSRERCGVPFSCCVK 77 (121)
T ss_pred HHHHHHHHH----hccCCCCCC----hHHhcccccccccCCCCCCCCCCCCcccccC
Confidence 578999875 899999886 66774210 12499999963
No 15
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=97.89 E-value=2.9e-05 Score=60.25 Aligned_cols=42 Identities=14% Similarity=0.422 Sum_probs=29.4
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhc-CCccCccccCCCC-CCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH-ISPLQARCCKPPT-ICG 177 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~-~~~vp~sCC~~p~-~Cg 177 (269)
++.||.+|. .++|||+++ +.||.... ...+|.|||+++. .|+
T Consensus 32 ~~~~D~iQ~----~l~CCG~~~----~~DW~~~~~~~~vP~SCC~~~~~~C~ 75 (103)
T cd03157 32 THAWNSFQT----EFKCCGVIY----FTDWLEMTEMEWPPDSCCSNQYPGCA 75 (103)
T ss_pred HHHHHHHHH----hccCccCCC----hhHHhccCCCCCCCccccCCCCCCcC
Confidence 457999875 899999886 67775321 1348999997543 564
No 16
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=97.77 E-value=4.3e-05 Score=56.33 Aligned_cols=37 Identities=14% Similarity=0.362 Sum_probs=27.9
Q ss_pred CccchHHHHhhhhcCCcccccccCCCChhhhhhhcCCccCccccCC
Q 024319 127 DSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQARCCKP 172 (269)
Q Consensus 127 ~~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC~~ 172 (269)
.+..||.+|. +++|||.++ +.||.. ....+|+|||.+
T Consensus 28 ~~~~~d~iq~----~l~CCG~~~----~~D~~~-~~~~vP~SCc~~ 64 (90)
T cd03127 28 FQEAMDALQS----TFECCGVNG----PTDYLD-LRLLVPSSCCKG 64 (90)
T ss_pred HHHHHHHHHH----hCcCcCCCC----hHHHcc-CCCCCCHhhcCC
Confidence 3567888875 899999876 678853 235789999964
No 17
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=97.76 E-value=2.7e-05 Score=63.93 Aligned_cols=76 Identities=17% Similarity=0.412 Sum_probs=45.1
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhh-----h----------------------cCCccCccccCC--CCCCCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFS-----A----------------------HISPLQARCCKP--PTICGF 178 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~-----~----------------------~~~~vp~sCC~~--p~~Cg~ 178 (269)
+..||.+|. +++|||.++ +.||.. . ....||-|||.| |..|..
T Consensus 34 ~~~~D~lQ~----~fkCCG~~~----y~DW~~~~w~~n~y~~~~~~~~~~~~~~~~~~~~~~~~vP~SCc~~~~~~~C~~ 105 (143)
T cd03162 34 KKTIDMLQI----EFQCCGNNG----YRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLTDGVPFSCCNPSSPRPCIQ 105 (143)
T ss_pred HHHHHHHHH----hccCCCCCC----hhhhhhhhhhcccccCCCccchhhhhhcccccccccCCcCCcccCCCCCCchhh
Confidence 456888875 899999875 445531 1 124789999975 446765
Q ss_pred cCC-CCccccCCCCCC---CCCCCCCccccCccccccCcchHHHHHHHHHHh
Q 024319 179 SYV-NPTLWLNPVNPT---GDPDCFLWSNDQSQLCYNCSSCKAGLLGNLRNE 226 (269)
Q Consensus 179 ~~~-n~t~w~~~~~~~---~~~dC~~~~n~~~~lCy~c~~Ck~~i~~~l~~~ 226 (269)
... |.. ++.. ...+...| -+||++++++++.+.
T Consensus 106 ~~~~~~~-----a~~~~~~~~~~~~i~----------~~GC~~~l~~~~~~~ 142 (143)
T cd03162 106 HQITDNS-----AHYNYDYQTEELNLW----------TRGCREALLEYYTSK 142 (143)
T ss_pred hcccccc-----cccccccCcccccch----------HHHHHHHHHHHHHhc
Confidence 211 110 0100 11222233 279999999998764
No 18
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=97.72 E-value=1.2e-05 Score=59.76 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=21.5
Q ss_pred cchHHHHhhhhcCCcccccccCCCChhhhhhhcCCccCcccc
Q 024319 129 KNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQARCC 170 (269)
Q Consensus 129 ~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC 170 (269)
..||.+|. +++|||.++ +.|| .+|+||+
T Consensus 32 ~~~d~iQ~----~l~CCG~~~----~~D~------~vP~SC~ 59 (84)
T cd03152 32 ETLKAIHF----ALDCCGPTG----GLEQ------FVTDTCP 59 (84)
T ss_pred HHHHHHHH----HHcCCCCCC----Cccc------ccCCCCC
Confidence 57888875 899999875 5666 3788873
No 19
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=91.71 E-value=0.14 Score=37.76 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=20.1
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhcCCccCccc
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQARC 169 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sC 169 (269)
++.||.+|. ++.|||.++ +.|... +++|.+|
T Consensus 31 ~~~~d~iQ~----~l~CCG~~~----~~d~~~---~~~~~~C 61 (84)
T cd03151 31 TAVLKTFHS----TLDCCGKGN----LTALLS---LLSTDLC 61 (84)
T ss_pred HHHHHHHHH----hcCCCCCCC----CcchHH---HHHhCCC
Confidence 346888875 899999886 333221 4566677
No 20
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=85.54 E-value=8.1 Score=33.24 Aligned_cols=54 Identities=13% Similarity=0.056 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCccchh-hhhHHHHHHHHHHHHHHhhhh
Q 024319 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFI 61 (269)
Q Consensus 8 l~~~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~-~~~pli~~G~~~~~vs~~Gc~ 61 (269)
+-++-.++.++|+.++.+|...+...++.+.+. .....-.+|+.++++|.++..
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence 445556777888888888877666654322222 112245666666666655543
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.36 E-value=2.1 Score=36.27 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024319 10 VLNFIALLCSIPIIASGIWL 29 (269)
Q Consensus 10 ~~n~l~~l~G~~ll~~Gi~~ 29 (269)
+.+++..++|+++++.|+-.
T Consensus 6 i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555543
No 22
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=82.46 E-value=3.1 Score=32.85 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHH
Q 024319 9 AVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSL 57 (269)
Q Consensus 9 ~~~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~ 57 (269)
.++-++.+++|.+++.+|+.+....- +-...-.++++++|+++++=|+
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i-~~~~~~~~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHI-DGDRDRGWALLILGILCFIPGF 91 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-CCCCcccchHHHHHHHHHhccH
Confidence 34455666788888888887776541 1111223578888888876554
No 23
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=71.71 E-value=11 Score=38.24 Aligned_cols=65 Identities=23% Similarity=0.487 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHH
Q 024319 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIV 83 (269)
Q Consensus 8 l~~~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~ 83 (269)
+.+..+++.++|+++++-|+|+..-+.+ +-.+++|+.+++.+++= +++++..|.+|..+++.-++
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~lggs-------~yy~iagl~~l~~~~ll----~~~k~aal~lya~~~~~t~~ 67 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVALGGS-------WYYLIAGLVLLLSAWLL----LRRKRAALWLYALVLLGTLV 67 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEeeCCc-------hHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHhH
Confidence 3455677888999999999888765532 22467777777777764 58888899999887765443
No 24
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=70.30 E-value=60 Score=27.87 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhH-HHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 024319 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWP-VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLL 86 (269)
Q Consensus 8 l~~~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p-li~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~~el 86 (269)
+++++++++++.++-++.++...++.. +......+- .-.++++. +++|..|--|.+.-+|..|.+-.++.-++=+
T Consensus 40 l~~~h~ll~l~~~a~v~~~~L~~i~~~-~~p~p~~Wey~~~lS~ip---~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl 115 (186)
T PF07086_consen 40 LILFHALLWLLMAAKVSVDILLEISEL-QIPSPYQWEYIWCLSLIP---SLLGLLSLRRNNISLLRLYMIGSSLFGLLPL 115 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCChhHHHHHHHHHHHH---HHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 557788888888887777776555432 111111122 23334444 4455555566666777777765555434434
Q ss_pred HHHhh
Q 024319 87 VVLVF 91 (269)
Q Consensus 87 ~~~i~ 91 (269)
..+..
T Consensus 116 ~~g~~ 120 (186)
T PF07086_consen 116 IYGAM 120 (186)
T ss_pred HHHHH
Confidence 44433
No 25
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=69.30 E-value=13 Score=26.71 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 024319 11 LNFIALLCSIPIIASGIWLASKP 33 (269)
Q Consensus 11 ~n~l~~l~G~~ll~~Gi~~~~~~ 33 (269)
-|.+++++|++++.+|-++....
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~ 28 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGG 28 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCC
Confidence 48889999999999998876654
No 26
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=68.44 E-value=33 Score=23.44 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhhhhccch
Q 024319 18 CSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKE 68 (269)
Q Consensus 18 ~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~Ga~~es~ 68 (269)
.|+..+.+|+++...++ .......+.+|..+++.|..-...+.++++
T Consensus 2 ~Gil~iv~Gi~~l~~p~----~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPD----ASLAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57888889998887653 122233578888888899888888887543
No 27
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=67.52 E-value=13 Score=31.33 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchh
Q 024319 45 VVLLGVLVLLVSLCGFIGAYWYKET 69 (269)
Q Consensus 45 li~~G~~~~~vs~~Gc~Ga~~es~~ 69 (269)
+++.++++++++++-.....+..+.
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5777777888888888887766544
No 28
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=66.79 E-value=10 Score=36.99 Aligned_cols=43 Identities=30% Similarity=0.427 Sum_probs=33.7
Q ss_pred hhH-HHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHH
Q 024319 42 RWP-VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVL 84 (269)
Q Consensus 42 ~~p-li~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~~ 84 (269)
.|| .+++=.+.+++-+.++.|-.|+|||++..|.+.=++.+++
T Consensus 209 RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 209 RWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 456 4555567788889999999999999999998876665554
No 29
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=66.02 E-value=2 Score=34.45 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHH
Q 024319 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIV 83 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~ 83 (269)
+-.++|+..+.+|+.+...... .......| +-.|++.++.|.+|.....|.+++++..++++-++-++
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~-~~~~~~~p-iW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~ 72 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSS-VLVYIGYP-IWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSAL 72 (150)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHHHhccc-HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHH
Confidence 4456788888888876654321 01112234 44588888999999999999999988877766555443
No 30
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=65.30 E-value=84 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHhhhh-hhhcc
Q 024319 43 WPVVLLGVLVLLVSLCGFI-GAYWY 66 (269)
Q Consensus 43 ~pli~~G~~~~~vs~~Gc~-Ga~~e 66 (269)
-|++++|+..+.-+.+|.. |..-.
T Consensus 75 DP~~~~g~~t~a~g~lG~L~GP~~G 99 (173)
T PF08566_consen 75 DPFMVYGLATLACGALGWLVGPSLG 99 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4789999999988888863 44333
No 31
>PF15050 SCIMP: SCIMP protein
Probab=63.25 E-value=13 Score=29.51 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=17.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 024319 221 GNLRNEWRKANIILIVAVVILIWVYLIAC 249 (269)
Q Consensus 221 ~~l~~~~~~i~~~~i~v~~~~i~~~~~ac 249 (269)
+|.+++.+++-.++|+ ++-.++|+++=|
T Consensus 2 ~WWr~nFWiiLAVaII-~vS~~lglIlyC 29 (133)
T PF15050_consen 2 SWWRDNFWIILAVAII-LVSVVLGLILYC 29 (133)
T ss_pred chHHhchHHHHHHHHH-HHHHHHHHHHHH
Confidence 5788888888777744 344445555443
No 32
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=62.33 E-value=16 Score=35.25 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=29.3
Q ss_pred hhHH-HHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHH
Q 024319 42 RWPV-VLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIV 83 (269)
Q Consensus 42 ~~pl-i~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~ 83 (269)
.||. +++=++.+++.+++++|..|+|||.+.++.++=+++++
T Consensus 208 Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~ 250 (418)
T cd07912 208 RWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALI 250 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4553 23333566788889999999999999988665444433
No 33
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=58.98 E-value=51 Score=25.38 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024319 6 NITAVLNFIALLCSIPIIASGIWLASKP 33 (269)
Q Consensus 6 ~~l~~~n~l~~l~G~~ll~~Gi~~~~~~ 33 (269)
.+..+.+.+++++.++.+++++|.+++.
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVDA 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999988763
No 34
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=57.85 E-value=21 Score=23.80 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q 024319 39 HLFRWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 39 ~~~~~pli~~G~~~~~vs~~G 59 (269)
+....|.+.+|+++.+.+..+
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 445679999999888887765
No 35
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=56.86 E-value=59 Score=25.51 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccchh-hhhHHHHHHHHHHHHHHhhhhh
Q 024319 12 NFIALLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIG 62 (269)
Q Consensus 12 n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~-~~~pli~~G~~~~~vs~~Gc~G 62 (269)
|++..+++.++.++|+|...+++ ..+. ...-++.-|+.++++++-+.-|
T Consensus 2 ~~~~~~~~~~Lf~iGiy~il~rn--li~~ligl~im~~avnL~~v~~g~~~~ 51 (114)
T PRK12660 2 NLILLLVIGFLVFIGTYMILSIN--LIRIVIGISIYTHAGNLIIMSMGGYGS 51 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56677888889999999875432 2222 2233677777777777665543
No 36
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=54.36 E-value=43 Score=23.12 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 024319 16 LLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGA 63 (269)
Q Consensus 16 ~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~Ga 63 (269)
.++|++++..|+....... .+.+..+|+.+++.++.|.|..
T Consensus 14 ~~~G~~l~~~~~~~~~~~~-------~~~~~~~g~~ll~~g~~g~Cp~ 54 (66)
T PF11127_consen 14 IIIGIVLLALGLLGLFGSW-------GWLLGFVGAMLLVTGITGFCPL 54 (66)
T ss_pred HHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHHHHHHCcCHh
Confidence 3455555555544332210 2345666777777777776654
No 37
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=53.28 E-value=4.4 Score=37.15 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 024319 224 RNEWRKANIILIVAVVILIWVYLIACSAFKNAQTE 258 (269)
Q Consensus 224 ~~~~~~i~~~~i~v~~~~i~~~~~ac~l~r~~~~~ 258 (269)
.+.|...-+.+++|+++++++.+++||.||+.|+.
T Consensus 142 ~d~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~G 176 (290)
T PF05454_consen 142 SDDYLHTFIPAVVIAAILLIAGIIACICYRRKRKG 176 (290)
T ss_dssp -----------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34455555677888888888999999999865543
No 38
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=53.14 E-value=49 Score=28.34 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhhhhccch
Q 024319 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKE 68 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~Ga~~es~ 68 (269)
.+.+.|++++.+|++....+.. + .......+|.++++.|.+=..+|..+++
T Consensus 21 ~~l~~Gv~lii~Gl~~l~~P~~---s-~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 21 WVLLLGVLLIILGLLALFNPAI---S-TVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567899999999998875411 1 1223577888888888887777776655
No 39
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.14 E-value=1.5e+02 Score=25.17 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 024319 8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLV 87 (269)
Q Consensus 8 l~~~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~~el~ 87 (269)
++.+.++.|+++++-+++|---....+ +...-+.+.-.-.+ -++-|++|..+.-|.+.-.|..|.+.+++..+.-+.
T Consensus 40 lifvh~lI~v~mlak~~l~hl~~~k~d-~v~~py~wey~~~~--SllpslLgllsf~rnkv~~L~l~m~a~~lf~i~p~~ 116 (183)
T KOG4054|consen 40 LIFVHALIWVLMLAKMSLGHLRLLKHD-QVPMPYQWEYVWAL--SLLPSLLGLLSFRRNKVSYLVLYMIAMGLFMIFPLV 116 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcc-cCCCchhHHHHHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888886643222221 11111222222222 244667777777777888888888888887755444
Q ss_pred HH
Q 024319 88 VL 89 (269)
Q Consensus 88 ~~ 89 (269)
.+
T Consensus 117 ~~ 118 (183)
T KOG4054|consen 117 YG 118 (183)
T ss_pred Hh
Confidence 33
No 40
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=50.64 E-value=36 Score=21.47 Aligned_cols=22 Identities=18% Similarity=0.470 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024319 230 ANIILIVAVVILIWVYLIACSA 251 (269)
Q Consensus 230 i~~~~i~v~~~~i~~~~~ac~l 251 (269)
++++.++++++-+..+..+||.
T Consensus 9 Iv~V~vg~~iiii~~~~YaCcy 30 (38)
T PF02439_consen 9 IVAVVVGMAIIIICMFYYACCY 30 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 41
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=50.20 E-value=39 Score=28.36 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhh
Q 024319 11 LNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 11 ~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc 60 (269)
.|++..++..+++++|+|+..+++ -....+...++.-|+.+++++.-+-
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~rn-Lir~iiGl~il~~~vnLlii~~G~~ 51 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLERS-LTRMLLGLLLIGNGVNLLILTAGGP 51 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777888888999999887542 1112233346777777777766553
No 42
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=49.57 E-value=1.5e+02 Score=24.44 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 024319 3 VSNNITAVLNFIALLCSIPIIASGIWLASKPD 34 (269)
Q Consensus 3 ~~k~~l~~~n~l~~l~G~~ll~~Gi~~~~~~~ 34 (269)
..+-++-++-.++.++|..+..+|.......+
T Consensus 3 ~~~~~~~il~~ill~lG~~f~ligaIGllRfP 34 (145)
T PRK12586 3 ITKEIFSLIAAIMILLGSIIALISAIGIVKFQ 34 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455666777888888888887777666643
No 43
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=48.97 E-value=92 Score=21.93 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHh
Q 024319 4 SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLC 58 (269)
Q Consensus 4 ~k~~l~~~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~ 58 (269)
-|++=-.+.++.+++|.+.+.++.+.... ....+++|+.++++|++
T Consensus 7 fk~iW~~~DIi~Fila~i~i~it~F~~n~---------~~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 7 FKTIWKYFDIILFILAMIFINITAFLINQ---------IAGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 44555577788888888888888776632 13457777777777765
No 44
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=48.92 E-value=1.3e+02 Score=23.54 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 024319 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIG 62 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~G 62 (269)
.+.+++++++++|+|....+.+-.......-++.-|+.++++++-...|
T Consensus 4 ~~~~~~~~Lf~iGlygil~rrnli~~liglei~~~av~L~lv~~g~~~~ 52 (114)
T PRK08389 4 AYYFGAIALVLIGLYGVLVKKNLLKIIIGLDIMETGVNLLLISIGYVSG 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4567788889999996663321111222334778888888887765544
No 45
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=48.11 E-value=9.6 Score=30.20 Aligned_cols=13 Identities=15% Similarity=0.554 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 024319 46 VLLGVLVLLVSLC 58 (269)
Q Consensus 46 i~~G~~~~~vs~~ 58 (269)
.+.|+++++++++
T Consensus 58 ~~fg~Lli~lg~f 70 (124)
T KOG4753|consen 58 LVFGLLLIGLGFF 70 (124)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 46
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=47.14 E-value=1.3e+02 Score=26.10 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhccCC----Cccch---h--hhhHHHHHHHHHHHHHHhhhhhhhc
Q 024319 14 IALLCSIPIIASGIWLASKPD----NECIH---L--FRWPVVLLGVLVLLVSLCGFIGAYW 65 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~----~~~~~---~--~~~pli~~G~~~~~vs~~Gc~Ga~~ 65 (269)
+..++|++..++|+....+.. -+.++ . .+.++.+-|..+++.++.|......
T Consensus 4 ~~~v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~ 64 (196)
T PF06770_consen 4 ILFVVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITS 64 (196)
T ss_pred hhHHHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445588888888887666542 11221 1 1344788999999988888876664
No 47
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=46.32 E-value=1.4e+02 Score=23.93 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 024319 10 VLNFIALLCSIPIIASGIWLASKP 33 (269)
Q Consensus 10 ~~n~l~~l~G~~ll~~Gi~~~~~~ 33 (269)
.++.++..+|.++++.|+...+..
T Consensus 31 ~~~~~l~~lGall~~~gii~fvA~ 54 (145)
T PF09925_consen 31 WLARILLYLGALLLGLGIILFVAA 54 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999998777654
No 48
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=43.71 E-value=14 Score=25.62 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhh
Q 024319 45 VVLLGVLVLLVSLCG 59 (269)
Q Consensus 45 li~~G~~~~~vs~~G 59 (269)
.++.|++..++|+++
T Consensus 44 ~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 44 YLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHhHHHHHHHHHhh
Confidence 688888888888764
No 49
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=41.72 E-value=45 Score=25.70 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=25.0
Q ss_pred HHhhHHHHHHHHHHHHH-HHHHHHHHHHhhhhhchhhhhccc
Q 024319 224 RNEWRKANIILIVAVVI-LIWVYLIACSAFKNAQTEDLFRRY 264 (269)
Q Consensus 224 ~~~~~~i~~~~i~v~~~-~i~~~~~ac~l~r~~~~~~~~~~~ 264 (269)
-+.|..+.+|.++++++ .++.+++=|-+.++.+..+.+||.
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL 55 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRL 55 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccC
Confidence 35566666666665544 445555558888777766655544
No 50
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=40.98 E-value=2.3e+02 Score=26.27 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 024319 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWY 66 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~Ga~~e 66 (269)
=+....|+.++++|+-...+.+.+-........+..|..++.++....--..++
T Consensus 256 Hl~l~~givl~~~gl~~~v~~~~~~~~~~~~~~~~~g~alfll~~~~~~~~~~~ 309 (354)
T PF06772_consen 256 HLPLVAGIVLIAVGLELVVEHPVAHSSPRWALALLGGVALFLLGLWLFRRRNKR 309 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356688999999998877765322111112224577888887777766544444
No 51
>PF05374 Mu-conotoxin: Mu-Conotoxin; InterPro: IPR008036 This entry represents Mu-type conotoxins. Cone snail toxins, conotoxins, are small peptides with disulphide connectivity, that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cystine knot scaffold. The knottin scaffold is a very special disulphide through disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network as well as specific amino acids in inter-cysteine loops provide specificity of conotoxin []. The cysteine arrangement is the same for omega, delta and kappa families, but omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangement, but the knottin scaffold is not observed. Conotoxin gm9a, a putative 27-residue polypeptide encoded by Conus gloriamaris, has been shown to adopt an inhibitory cystine knot motif constrained by three disulphide bonds [, ].Mu conotoxins target the voltage-gated sodium channels, preferential skeletal muscle [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangement [] and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1R9I_A 1GIB_A 1TCJ_A 1TCG_A 1TCK_A 1TCH_A.
Probab=40.42 E-value=14 Score=20.30 Aligned_cols=9 Identities=56% Similarity=1.693 Sum_probs=7.5
Q ss_pred ccCCCCCCC
Q 024319 169 CCKPPTICG 177 (269)
Q Consensus 169 CC~~p~~Cg 177 (269)
||++|.+|.
T Consensus 3 CC~~Pk~Ck 11 (22)
T PF05374_consen 3 CCGPPKSCK 11 (22)
T ss_dssp SSSSSTGGC
T ss_pred ccCCCcccc
Confidence 899998884
No 52
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.13 E-value=59 Score=20.54 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchhh
Q 024319 229 KANIILIVAVVILIWVYLIACSAFKNAQTED 259 (269)
Q Consensus 229 ~i~~~~i~v~~~~i~~~~~ac~l~r~~~~~~ 259 (269)
.++++.-+++.+.++.+.+-|...+..|.++
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 5678888888888888888888888866654
No 53
>PRK10209 acid-resistance membrane protein; Provisional
Probab=40.12 E-value=1.6e+02 Score=25.02 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 024319 14 IALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWY 66 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc~Ga~~e 66 (269)
.+.+.|++.+.+|+.....+.. . .....+.+|+.+++-|+....++.+.
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~---~-~~~~~~~~g~~ll~~Gi~~l~~~~~~ 71 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFV---S-GDALSTVVGILLICSGIALIVGLFAN 71 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567899999999988876521 1 11223668888888888877766543
No 54
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=40.08 E-value=1.8e+02 Score=22.82 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhh
Q 024319 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 12 n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc 60 (269)
|.+..++..++.++|+|+..+++ -........++.-|+.++++++-..
T Consensus 2 ~~~~~~~~~~Lf~iG~y~il~rn-li~~ligl~im~~avnL~~v~~g~~ 49 (117)
T PRK12659 2 EFLLAIVVGGLYAAGIYMMLRRS-IVKLVIGLILLGNAANLLIFTVGRL 49 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45667788888999999886442 1112223346677777766666543
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.85 E-value=55 Score=26.13 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=5.9
Q ss_pred HHHHHHhhhhhchh
Q 024319 245 YLIACSAFKNAQTE 258 (269)
Q Consensus 245 ~~~ac~l~r~~~~~ 258 (269)
++++.++.|.+|+.
T Consensus 82 lli~y~irR~~Kk~ 95 (122)
T PF01102_consen 82 LLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHS---
T ss_pred HHHHHHHHHHhccC
Confidence 34455556555553
No 56
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.81 E-value=1.1e+02 Score=25.61 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhh
Q 024319 45 VVLLGVLVLLVSLCG 59 (269)
Q Consensus 45 li~~G~~~~~vs~~G 59 (269)
.+++|+++++.|..+
T Consensus 11 ~iilgilli~~gI~~ 25 (191)
T PF04156_consen 11 LIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555544444444
No 57
>PF15345 TMEM51: Transmembrane protein 51
Probab=36.73 E-value=42 Score=29.75 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 024319 43 WPVVLLGVLVLLVSLCGFI 61 (269)
Q Consensus 43 ~pli~~G~~~~~vs~~Gc~ 61 (269)
..++++|+++++++++=.+
T Consensus 62 yVLVG~Gv~LLLLSICL~I 80 (233)
T PF15345_consen 62 YVLVGSGVALLLLSICLSI 80 (233)
T ss_pred EehhhHHHHHHHHHHHHHH
Confidence 3489999999999986443
No 58
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=36.07 E-value=81 Score=26.00 Aligned_cols=42 Identities=12% Similarity=0.320 Sum_probs=27.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc
Q 024319 221 GNLRNEWRKANIILIVAVVILIWVYLIACSAFKNAQTEDLFR 262 (269)
Q Consensus 221 ~~l~~~~~~i~~~~i~v~~~~i~~~~~ac~l~r~~~~~~~~~ 262 (269)
+++.++...-..+-++++++.++.++++...+-+.|.+.++|
T Consensus 6 ~Yl~~q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyR 47 (149)
T PF11694_consen 6 DYLQSQQSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKYR 47 (149)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 566666666677777777776666666666665556655554
No 59
>PTZ00370 STEVOR; Provisional
Probab=35.68 E-value=49 Score=30.32 Aligned_cols=24 Identities=0% Similarity=0.116 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhh
Q 024319 238 VVILIWVYLIACSAFKNAQTEDLF 261 (269)
Q Consensus 238 ~~~~i~~~~~ac~l~r~~~~~~~~ 261 (269)
+++-++.+++=..|||+.|+.+++
T Consensus 265 lil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 265 LILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHH
Confidence 333333344445899888877755
No 60
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.43 E-value=48 Score=30.37 Aligned_cols=24 Identities=0% Similarity=0.127 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhh
Q 024319 238 VVILIWVYLIACSAFKNAQTEDLF 261 (269)
Q Consensus 238 ~~~~i~~~~~ac~l~r~~~~~~~~ 261 (269)
+++-++.+++=..|+|+.|+.+++
T Consensus 269 lil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 269 IILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHHHHHhhcccccc
Confidence 333333344445888887777654
No 61
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=35.31 E-value=1e+02 Score=23.87 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhh
Q 024319 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 12 n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~G 59 (269)
++++.+...++.++|+|+..+++ -....+...++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~~n-lir~iigl~i~~~~vnL~~v~~g~ 48 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLSRS-VVRVVLGLALLGYAVNLFILTMGG 48 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677788888999999877542 111222334677777777666554
No 62
>PRK02935 hypothetical protein; Provisional
Probab=35.04 E-value=1.7e+02 Score=22.85 Aligned_cols=29 Identities=10% Similarity=0.470 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHH
Q 024319 43 WPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLC 76 (269)
Q Consensus 43 ~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~ 76 (269)
..++.+|.+++-+|++ +|+++.+..+|++
T Consensus 17 L~lvfiG~~vMy~Gif-----f~~~~~~m~ifm~ 45 (110)
T PRK02935 17 LSLVFIGFIVMYLGIF-----FRESIIIMTIFML 45 (110)
T ss_pred HHHHHHHHHHHHHHHH-----hcccHHHHHHHHH
Confidence 3478888888888855 4777776665544
No 63
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=34.74 E-value=14 Score=35.54 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHH
Q 024319 50 VLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIV 83 (269)
Q Consensus 50 ~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~ 83 (269)
++.+++-+++++|..|+|||++..+.++-++.++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll~lv 227 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLLALV 227 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHH
Confidence 3556778889999999999999776665444433
No 64
>PF15125 TMEM238: TMEM238 protein family
Probab=33.30 E-value=1.7e+02 Score=20.66 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhh
Q 024319 9 AVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 9 ~~~n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc 60 (269)
+.+-++|=++|++++-+|+..-... -+ -++=.|.+++++|+++-
T Consensus 7 f~laV~fD~vGl~~Ll~GiFa~l~f----~D----~lvY~GaliiflSL~~W 50 (65)
T PF15125_consen 7 FWLAVVFDVVGLVMLLTGIFAPLDF----YD----FLVYTGALIIFLSLLWW 50 (65)
T ss_pred hHHHHHHHHhhHHHHHHHHhcchhH----HH----HHHHHhHHHHHHHHHHH
Confidence 3455666677777777777644321 11 24556666666666653
No 65
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=32.38 E-value=1.6e+02 Score=23.51 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=23.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhheee
Q 024319 65 WYKETLLAFYLCVMAILIVLLLVVLVFAFVVT 96 (269)
Q Consensus 65 ~es~~lL~~y~~~l~ll~~~el~~~i~~~~~~ 96 (269)
-+...++..|+..+++++.+.+.++++.+..+
T Consensus 52 s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~~ 83 (237)
T PF02932_consen 52 SYAKPLDGWYFICTMFVFSASLEFAVVVYNIH 83 (237)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccccchhhhHHHHhhhhhhhhc
Confidence 44577888888888888777766766666653
No 66
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=32.33 E-value=68 Score=24.08 Aligned_cols=34 Identities=15% Similarity=0.429 Sum_probs=24.3
Q ss_pred chHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHH
Q 024319 214 SCKAGLLGNLRN-------EWRKANIILIVAVVILIWVYLI 247 (269)
Q Consensus 214 ~Ck~~i~~~l~~-------~~~~i~~~~i~v~~~~i~~~~~ 247 (269)
+|--.+.|+=|+ -|+.+.+++.++.++.++|+++
T Consensus 25 ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~vl~lGili 65 (91)
T PHA02680 25 ACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFV 65 (91)
T ss_pred HHHHhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555553 3999999999999888888543
No 67
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=32.20 E-value=60 Score=26.01 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024319 5 NNITAVLNFIALLCSIPIIASGI 27 (269)
Q Consensus 5 k~~l~~~n~l~~l~G~~ll~~Gi 27 (269)
||.+..+.++..++|+++|+.+|
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi 58 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSI 58 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555554
No 68
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=31.32 E-value=2.7e+02 Score=22.16 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHH--Hhhhhh
Q 024319 17 LCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVS--LCGFIG 62 (269)
Q Consensus 17 l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs--~~Gc~G 62 (269)
.+|++++.+|+-....++......+....+++|++.+++. +.|.|.
T Consensus 43 ~ig~vi~~~~li~~~~k~~~~~~gl~i~~i~~gil~~lip~~lIG~C~ 90 (124)
T PF14387_consen 43 GIGAVIAVLSLIMLFVKNKKARIGLSIANIALGILVILIPTVLIGVCM 90 (124)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 4555555555554443322222223333566666655554 555553
No 69
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=31.23 E-value=62 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhhhhhchhhh
Q 024319 227 WRKANIILIVAV-VILIWVYLIACSAFKNAQTEDL 260 (269)
Q Consensus 227 ~~~i~~~~i~v~-~~~i~~~~~ac~l~r~~~~~~~ 260 (269)
+.++++++++++ ++-++...+....||.++|+++
T Consensus 4 l~i~~iialiv~~iiaIvvW~iv~ieYrk~~rqrk 38 (81)
T PF00558_consen 4 LEILAIIALIVALIIAIVVWTIVYIEYRKIKRQRK 38 (81)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777664 3355556666677887776653
No 70
>COG2245 Predicted membrane protein [Function unknown]
Probab=30.33 E-value=3.4e+02 Score=23.07 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccchhhhhH--HHHHHHHHHHHHHhhh
Q 024319 14 IALLCSIPIIASGIWLASKPDNECIHLFRWP--VVLLGVLVLLVSLCGF 60 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~p--li~~G~~~~~vs~~Gc 60 (269)
++-++|.+++-+|+++..+.-.+. +.+... ..++|++.+++-.++.
T Consensus 29 ilSlVG~VLvlval~~iS~~~ge~-~IF~~yl~~~v~~l~~~vvvifat 76 (182)
T COG2245 29 ILSLVGLVLVLVALYMISKQVGED-RIFNNYLIAVVLGLVGFVVVIFAT 76 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999887642221 222222 1345555555555543
No 71
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=30.19 E-value=2.5e+02 Score=21.45 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024319 6 NITAVLNFIALLCSIP 21 (269)
Q Consensus 6 ~~l~~~n~l~~l~G~~ 21 (269)
|+..+.+++..+.|+.
T Consensus 39 y~~~~~~l~yaI~aVv 54 (98)
T PF13572_consen 39 YFDPVTKLMYAIGAVV 54 (98)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 72
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=29.90 E-value=1.8e+02 Score=22.92 Aligned_cols=28 Identities=7% Similarity=0.538 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccchhhHHHHH
Q 024319 43 WPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYL 75 (269)
Q Consensus 43 ~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~ 75 (269)
..++.+|.+++.+|++ ++.++.+..+|+
T Consensus 16 l~lif~g~~vmy~gi~-----f~~~~~im~ifm 43 (114)
T PF11023_consen 16 LSLIFIGMIVMYIGIF-----FKASPIIMVIFM 43 (114)
T ss_pred HHHHHHHHHHHhhhhh-----hcccHHHHHHHH
Confidence 3468888888887653 456655554443
No 73
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=29.09 E-value=1.3e+02 Score=23.57 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhh
Q 024319 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc 60 (269)
.+..++..++.++|+|+..+++ -....+...++.-|+.+++++.-+.
T Consensus 3 ~~~~~~~~~L~~~G~ylll~rn-lik~iigl~i~~~~v~L~~v~~g~~ 49 (113)
T PRK08600 3 ILMIIVIGILTAIAVYLILSKS-LLRIIIGTTLLSHGANLLLLTMGGL 49 (113)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666777889999887553 1222233346777777777766543
No 74
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=29.05 E-value=67 Score=32.93 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024319 217 AGLLGNLRNEWRKANIILIVAVVILIWVYLIACSAF 252 (269)
Q Consensus 217 ~~i~~~l~~~~~~i~~~~i~v~~~~i~~~~~ac~l~ 252 (269)
+.+.+|+..+|+.+++++++++++.++.+ .||..
T Consensus 673 ~~~~~w~~~~w~~v~i~gi~~i~~m~~fi--k~~aV 706 (764)
T KOG3658|consen 673 ETFAEWIVLNWLAVNIVGIVLIVLMAFFI--KICAV 706 (764)
T ss_pred hhhHHHHHhhhHHhHhHHHHHHHHHHHhh--hheEE
Confidence 34567888999999999988887765544 34443
No 75
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=29.01 E-value=73 Score=24.06 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 024319 226 EWRKANIILIVAVVILIWVYLIA 248 (269)
Q Consensus 226 ~~~~i~~~~i~v~~~~i~~~~~a 248 (269)
-|+.+.+++-++.++.++|+++-
T Consensus 43 ~wRalSii~FI~giil~lG~~i~ 65 (92)
T PF05767_consen 43 TWRALSIICFILGIILTLGIVIF 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999988775
No 76
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=28.98 E-value=80 Score=30.24 Aligned_cols=16 Identities=19% Similarity=0.698 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 024319 45 VVLLGVLVLLVSLCGF 60 (269)
Q Consensus 45 li~~G~~~~~vs~~Gc 60 (269)
++++|++++++++++.
T Consensus 400 ~~~~~~i~~i~~~~~~ 415 (511)
T PF09972_consen 400 LIILGIILLILGFILL 415 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666665555
No 77
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.88 E-value=31 Score=35.07 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=25.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 024319 225 NEWRKANIILIVAVVILIWVYLIACSAFKNAQTE 258 (269)
Q Consensus 225 ~~~~~i~~~~i~v~~~~i~~~~~ac~l~r~~~~~ 258 (269)
++.|++.++.+.++++.++++++.|+|-|..|.+
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~e 300 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLE 300 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcccccC
Confidence 4556666667888888888888888888776643
No 78
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=28.86 E-value=2.8e+02 Score=24.88 Aligned_cols=14 Identities=21% Similarity=0.588 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhhhh
Q 024319 49 GVLVLLVSLCGFIG 62 (269)
Q Consensus 49 G~~~~~vs~~Gc~G 62 (269)
+++.|+.+.+|-+|
T Consensus 31 ~~~~F~~~ml~~~G 44 (284)
T PF12805_consen 31 ALLTFFFGMLGVYG 44 (284)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444444443
No 79
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=28.17 E-value=2.6e+02 Score=22.64 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 024319 15 ALLCSIPIIASGIWLASKP 33 (269)
Q Consensus 15 ~~l~G~~ll~~Gi~~~~~~ 33 (269)
+.++|..++-+|+.-..+.
T Consensus 2 l~ivG~IL~Lial~~is~~ 20 (139)
T PF06195_consen 2 LSIVGLILLLIALKEISDA 20 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4688999999999877664
No 80
>PHA02898 virion envelope protein; Provisional
Probab=28.04 E-value=66 Score=24.20 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 024319 225 NEWRKANIILIVAVVILIWVYLIA 248 (269)
Q Consensus 225 ~~~~~i~~~~i~v~~~~i~~~~~a 248 (269)
.-|+.+.+++.++.++.++|+++-
T Consensus 42 ~~wRalSii~FIlgivl~lG~~if 65 (92)
T PHA02898 42 SALRSISIISFILAIILILGIIFF 65 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999998774
No 81
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=27.50 E-value=1.3e+02 Score=22.67 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024319 5 NNITAVLNFIALLCSIPIIASGIWLASK 32 (269)
Q Consensus 5 k~~l~~~n~l~~l~G~~ll~~Gi~~~~~ 32 (269)
-.+++++.-+.++++.+++..|...-..
T Consensus 37 a~~~~v~SWi~f~ia~~~ll~ga~~n~~ 64 (97)
T PF06749_consen 37 AVVFFVLSWIVFIIAEALLLAGASMNAR 64 (97)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567788888888999999999876444
No 82
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=26.84 E-value=65 Score=19.84 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc
Q 024319 45 VVLLGVLVLLVSLCGFIGAYWY 66 (269)
Q Consensus 45 li~~G~~~~~vs~~Gc~Ga~~e 66 (269)
-+++|++++++++-|....+++
T Consensus 12 Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 12 GLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4788888888888888766543
No 83
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=26.74 E-value=1.2e+02 Score=24.27 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhhh
Q 024319 12 NFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 12 n~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~Gc 60 (269)
+++..+...++.++|+|+..+++ -....+...++.-|+.+++++.-+.
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~rn-lir~iigl~il~~avnLlii~~g~~ 49 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSRH-IIRILFGLALLGNAVNLLIFTAGRL 49 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45666778888999999887552 1112233346777777776665543
No 84
>COG3374 Predicted membrane protein [Function unknown]
Probab=26.45 E-value=1.4e+02 Score=25.77 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 024319 41 FRWPVVLLGVLVLLVSLCGF 60 (269)
Q Consensus 41 ~~~pli~~G~~~~~vs~~Gc 60 (269)
...|.+++|.++++.|+-|-
T Consensus 43 ~~~p~~~lG~~~~itGl~g~ 62 (197)
T COG3374 43 FAAPAAGLGIFILITGLWGE 62 (197)
T ss_pred ccchHHHHHHHHHHHHHHhh
Confidence 34566666666666666553
No 85
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=25.70 E-value=2.5e+02 Score=20.26 Aligned_cols=15 Identities=7% Similarity=0.503 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 024319 14 IALLCSIPIIASGIW 28 (269)
Q Consensus 14 l~~l~G~~ll~~Gi~ 28 (269)
+.+++|++++..|+.
T Consensus 47 ~~~v~gl~llv~G~~ 61 (82)
T PF11239_consen 47 LLVVVGLALLVAGVV 61 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 86
>PF15471 TMEM171: Transmembrane protein family 171
Probab=25.52 E-value=66 Score=29.33 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024319 7 ITAVLNFIALLCSIPIIASGIW 28 (269)
Q Consensus 7 ~l~~~n~l~~l~G~~ll~~Gi~ 28 (269)
+||+|-.+.+-+|+++-.+|.+
T Consensus 23 FLfvFGavllCvG~lLsIfgfq 44 (319)
T PF15471_consen 23 FLFVFGAVLLCVGVLLSIFGFQ 44 (319)
T ss_pred hhHHHhHHHHHHHHHHHHhhhc
Confidence 3444444444444444444444
No 87
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=25.45 E-value=67 Score=22.72 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=15.5
Q ss_pred HHHHHHHH---HHHHHHHHHHHH
Q 024319 9 AVLNFIAL---LCSIPIIASGIW 28 (269)
Q Consensus 9 ~~~n~l~~---l~G~~ll~~Gi~ 28 (269)
..+|++++ +.|++++++|--
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigPA 24 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGPA 24 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888 888888877753
No 88
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=25.26 E-value=1.6e+02 Score=26.37 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhc
Q 024319 41 FRWPVVLLGVLVLLVSLCGFIGAYW 65 (269)
Q Consensus 41 ~~~pli~~G~~~~~vs~~Gc~Ga~~ 65 (269)
+.+.++++|.++++.++++.+=..|
T Consensus 225 Lwwi~~vlG~ll~lr~~i~YikVrr 249 (262)
T KOG4812|consen 225 LWWIFLVLGLLLFLRGFINYIKVRR 249 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 3455899999999999999765443
No 89
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.79 E-value=1.1e+02 Score=22.98 Aligned_cols=26 Identities=15% Similarity=0.407 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhh
Q 024319 234 LIVAVVILIWVYLIACSAFKNAQTED 259 (269)
Q Consensus 234 ~i~v~~~~i~~~~~ac~l~r~~~~~~ 259 (269)
.++.+++.++.+=+-||+.|...|+-
T Consensus 39 vI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 39 VICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 33444455556667788887655543
No 90
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=24.60 E-value=5.1e+02 Score=25.96 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024319 11 LNFIALLCSIPIIASGIWL 29 (269)
Q Consensus 11 ~n~l~~l~G~~ll~~Gi~~ 29 (269)
.+++..+++.+.+.+-+++
T Consensus 401 i~Li~tiI~P~ti~~iIyl 419 (527)
T PF03142_consen 401 IDLIGTIILPATIVFIIYL 419 (527)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555544444444443
No 91
>PF14979 TMEM52: Transmembrane 52
Probab=24.26 E-value=1.7e+02 Score=24.24 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 024319 227 WRKANIILIVAVVILIWVYLIACSAFKNAQTE 258 (269)
Q Consensus 227 ~~~i~~~~i~v~~~~i~~~~~ac~l~r~~~~~ 258 (269)
.+.|..+.++++++++.|+...|..++-.||.
T Consensus 19 LWyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 19 LWYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46677777777888888888876555554444
No 92
>PF13630 SdpI: SdpI/YhfL protein family
Probab=24.09 E-value=2.5e+02 Score=19.42 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHhh
Q 024319 43 WPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 43 ~pli~~G~~~~~vs~~G 59 (269)
...+..|+++++++++.
T Consensus 32 ~~~~~~Gi~~~~~~~~~ 48 (76)
T PF13630_consen 32 KIFIIGGIVLLIIGIII 48 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34788888888877773
No 93
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=24.08 E-value=1.1e+02 Score=24.46 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhhhch
Q 024319 229 KANIILIVAVVILIW-VYLIACSAFKNAQT 257 (269)
Q Consensus 229 ~i~~~~i~v~~~~i~-~~~~ac~l~r~~~~ 257 (269)
+++++.++.+.+|.. |+.+||.+|...+|
T Consensus 101 i~~~~~~~aA~le~~fGfClGC~~y~~l~r 130 (131)
T PF14340_consen 101 ILAAILLVAAFLEAAFGFCLGCFMYYQLKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 444445555677776 99999999877664
No 94
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=24.06 E-value=4.7e+02 Score=22.53 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--CccchhhhhHHHHHHHHHHHHHHhhhh
Q 024319 13 FIALLCSIPIIASGIWLASKPD--NECIHLFRWPVVLLGVLVLLVSLCGFI 61 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~~~--~~~~~~~~~pli~~G~~~~~vs~~Gc~ 61 (269)
-.|..+|+..+..|.|+...-+ .+++-.+.-|....|++++..++.=--
T Consensus 43 ~~f~~lG~~~litGl~~~~TWPLPgsYNIlFgd~~~lfGv~lL~~~~~l~~ 93 (191)
T PF06168_consen 43 PFFGALGLFALITGLWGTFTWPLPGSYNILFGDPWLLFGVLLLSAGLALYR 93 (191)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCcccchHhhhHHHHHHHHHHHHHHHHc
Confidence 3455788888888888887743 233333445667777777777766443
No 95
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=23.84 E-value=3.1e+02 Score=20.45 Aligned_cols=73 Identities=10% Similarity=0.110 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhccCCCccchh-hhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhhe
Q 024319 16 LLCSIPIIASGIWLASKPDNECIHL-FRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFV 94 (269)
Q Consensus 16 ~l~G~~ll~~Gi~~~~~~~~~~~~~-~~~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~~el~~~i~~~~ 94 (269)
.+++..+..+|+|....+ .+.-.. +..-++..|+.+++++.....+ +. .=..+....+++-..|.+.+....+
T Consensus 8 ~~~~~~lf~iGl~~~~~~-~~li~~Ll~lE~m~~~v~l~~~~~~~~~~----~~-~~~~l~l~~ivi~~~E~algLsllv 81 (100)
T PRK05715 8 LILAAILFCIGLVGLLLR-RNAIVVLMSIELMLNAVNLNFVAFSSYLG----DL-DGQVFAFFVITVAAAEAAIGLAILL 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Cc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888865532 111111 2223566777666666554432 11 1112333344445568777655444
No 96
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.82 E-value=1.8e+02 Score=22.93 Aligned_cols=46 Identities=17% Similarity=0.358 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhh
Q 024319 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~G 59 (269)
++..+...++.++|+|+..+++ -....+...++.-|+.+++++.-+
T Consensus 3 ~~~~~~~~~L~~~G~Y~il~rn-lir~iigl~il~~avnL~lv~~g~ 48 (114)
T PRK09094 3 LVLALAIGVLTASGVWLLLRPR-TFQVILGLSLLSYAVNLFIFAMGR 48 (114)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566667789999887543 122223334677777777666554
No 97
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=23.77 E-value=3.2e+02 Score=20.57 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhccCCCccch-hhhhHHHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhhe
Q 024319 17 LCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFV 94 (269)
Q Consensus 17 l~G~~ll~~Gi~~~~~~~~~~~~-~~~~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~~y~~~l~ll~~~el~~~i~~~~ 94 (269)
+++..+...|++....... .-. ....-++..|+.++++++....+..-... ..+..+.+++-..|.+.+....+
T Consensus 8 ~~~~~lf~iGl~g~l~~rn-ll~~LlslE~m~~~v~l~~~~~~~~~~~~~~~~---~~l~l~~ivia~~E~algLsllv 82 (101)
T CHL00015 8 ILSAYLFSIGIYGLITSRN-MVRALMCLELILNAVNINFVTFSDFFDSRQLKG---DIFSIFVIAIAAAEAAIGLAIVS 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666778776654211 111 12233677787777777766544221001 22333344445568777655444
No 98
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=23.34 E-value=4.1e+02 Score=25.18 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhheeecC
Q 024319 70 LLAFYLCVMAILIVLLLVVLVFAFVVTRP 98 (269)
Q Consensus 70 lL~~y~~~l~ll~~~el~~~i~~~~~~~~ 98 (269)
.++...+++.+.++.. .|....+.++.
T Consensus 217 ~~ki~~ifl~v~lLfn--sG~i~~i~~d~ 243 (367)
T PF09971_consen 217 SFKILSIFLAVFLLFN--SGFIYEIFGDP 243 (367)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHhcCC
Confidence 3444455555555554 45444444443
No 99
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=23.17 E-value=79 Score=22.30 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 024319 12 NFIALLCSIPIIASGIWLASK 32 (269)
Q Consensus 12 n~l~~l~G~~ll~~Gi~~~~~ 32 (269)
..+.+++|+.++++|+|...+
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999998765
No 100
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=22.84 E-value=2e+02 Score=19.12 Aligned_cols=35 Identities=31% Similarity=0.627 Sum_probs=19.1
Q ss_pred HHHHHHhhccCC---CccchhhhhHHHHHHHHHHHHHH
Q 024319 23 IASGIWLASKPD---NECIHLFRWPVVLLGVLVLLVSL 57 (269)
Q Consensus 23 l~~Gi~~~~~~~---~~~~~~~~~pli~~G~~~~~vs~ 57 (269)
+.+|+|+...+. ...+.-..+.-+++|+++.++++
T Consensus 6 ~llGlwli~SPWvlgf~~~~~~~~~~vi~G~~v~~la~ 43 (51)
T PF03779_consen 6 LLLGLWLIVSPWVLGFSATAAAAWNNVIVGILVALLAL 43 (51)
T ss_pred HHHHHHHHHhHHHcccCCchhHHHHHHHHHHHHHHHHH
Confidence 455666665532 11112223345788888888884
No 101
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.53 E-value=1.2e+02 Score=27.29 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccchhhhhHHHHHHHHHHHHHHhh
Q 024319 13 FIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCG 59 (269)
Q Consensus 13 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~~G 59 (269)
++|+++|++++.+|+-+.+.-.....+.-...+.-+|++++.+-+++
T Consensus 199 i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~ 245 (256)
T PF09788_consen 199 IIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLI 245 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHH
No 102
>COG2149 Predicted membrane protein [Function unknown]
Probab=22.52 E-value=2.8e+02 Score=22.09 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 024319 45 VVLLGVLVLLVS 56 (269)
Q Consensus 45 li~~G~~~~~vs 56 (269)
+|.+|+++...+
T Consensus 63 ii~~gil~~a~g 74 (120)
T COG2149 63 LILVGILLAALG 74 (120)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 103
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=22.27 E-value=3e+02 Score=21.84 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH-hhhhhhhccchhhHHH
Q 024319 45 VVLLGVLVLLVSL-CGFIGAYWYKETLLAF 73 (269)
Q Consensus 45 li~~G~~~~~vs~-~Gc~Ga~~es~~lL~~ 73 (269)
+..+|+++.++++ ++.++.+++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 4566666665554 4777888877755444
No 104
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.24 E-value=6.9e+02 Score=28.13 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024319 4 SNNITAVLNFIALLCSIPIIASGIWLA 30 (269)
Q Consensus 4 ~k~~l~~~n~l~~l~G~~ll~~Gi~~~ 30 (269)
+..++++|.+.-+++=+ ++.++.|..
T Consensus 72 AD~L~~LFGl~AYLLP~-LL~~~a~~l 97 (1355)
T PRK10263 72 ADTLFFIFGVMAYTIPV-IIVGGCWFA 97 (1355)
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHH
Confidence 33444555544444433 333444443
No 105
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.96 E-value=2.1e+02 Score=21.42 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHh
Q 024319 46 VLLGVLVLLVSLC 58 (269)
Q Consensus 46 i~~G~~~~~vs~~ 58 (269)
+++|..++++||+
T Consensus 69 ~~IGfg~~~~Gf~ 81 (87)
T PF06781_consen 69 LAIGFGLMIVGFL 81 (87)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777775
No 106
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=20.89 E-value=1.1e+02 Score=21.22 Aligned_cols=18 Identities=22% Similarity=0.328 Sum_probs=12.3
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 024319 221 GNLRNEWRKANIILIVAV 238 (269)
Q Consensus 221 ~~l~~~~~~i~~~~i~v~ 238 (269)
+++.++|+++-++.+|++
T Consensus 2 ~WladYWWiiLl~lvG~i 19 (63)
T PF13980_consen 2 HWLADYWWIILLILVGMI 19 (63)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 578899998655555443
No 107
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=20.86 E-value=2e+02 Score=21.14 Aligned_cols=11 Identities=9% Similarity=0.156 Sum_probs=6.6
Q ss_pred HHhhhheeecC
Q 024319 88 VLVFAFVVTRP 98 (269)
Q Consensus 88 ~~i~~~~~~~~ 98 (269)
+..++|..++.
T Consensus 59 ~~~~g~~k~~g 69 (93)
T PF12666_consen 59 FAFLGFFKKDG 69 (93)
T ss_pred HHHhHhhhhcC
Confidence 55666666553
No 108
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.38 E-value=42 Score=28.13 Aligned_cols=7 Identities=14% Similarity=0.454 Sum_probs=3.2
Q ss_pred ccchHHH
Q 024319 128 SKNWNKI 134 (269)
Q Consensus 128 ~~~W~~i 134 (269)
...|+.-
T Consensus 12 ~g~~~~~ 18 (179)
T PF13908_consen 12 MGQWDPG 18 (179)
T ss_pred CCCCccC
Confidence 3445543
No 109
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.12 E-value=1.4e+02 Score=31.24 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhheee
Q 024319 68 ETLLAFYLCVMAILIVLLLVVLVFAFVVT 96 (269)
Q Consensus 68 ~~lL~~y~~~l~ll~~~el~~~i~~~~~~ 96 (269)
.|.-.+|.++|+++.++.++..+.+|+-.
T Consensus 136 ~c~R~~l~~~L~~~~~~il~g~i~aF~~n 164 (806)
T PF05478_consen 136 ACRRGCLGILLLLLTLIILFGVICAFVAN 164 (806)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777776666666777777743
Done!