Query 024319
Match_columns 269
No_of_seqs 204 out of 1113
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 97.8 4.6E-06 1.6E-10 61.2 1.0 34 128-172 32-65 (90)
2 2jwa_A Receptor tyrosine-prote 48.9 25 0.00084 22.1 3.9 26 230-255 14-39 (44)
3 1r9i_A MU-conotoxin PIIIA; cys 45.2 7.5 0.00026 21.3 0.9 11 167-177 2-12 (26)
4 1gib_A MU-conotoxin GIIIB; neu 28.8 20 0.00067 19.5 0.9 9 169-177 3-11 (26)
5 2l2t_A Receptor tyrosine-prote 22.6 1.2E+02 0.004 18.9 3.8 17 231-247 14-30 (44)
6 3rko_K NADH-quinone oxidoreduc 20.6 2.4E+02 0.0081 20.1 8.6 72 16-94 8-81 (100)
7 2kmz_A Tumor necrosis factor r 19.5 42 0.0014 21.5 1.2 18 200-218 14-31 (53)
8 2ks1_B Epidermal growth factor 18.4 1.2E+02 0.0042 18.8 3.2 23 230-252 14-36 (44)
9 2kog_A Vesicle-associated memb 18.4 1.3E+02 0.0044 22.6 4.0 21 229-249 98-118 (119)
10 1pi7_A VPU protein, U ORF prot 16.0 1.9E+02 0.0065 17.1 3.8 28 231-258 7-35 (36)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=97.79 E-value=4.6e-06 Score=61.25 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=25.8
Q ss_pred ccchHHHHhhhhcCCcccccccCCCChhhhhhhcCCccCccccCC
Q 024319 128 SKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQARCCKP 172 (269)
Q Consensus 128 ~~~W~~iq~cl~~~~~Ccg~~~~~~~~~d~~~~~~~~vp~sCC~~ 172 (269)
+..||.+|. .+.|||.++ +.||.. .++|+|||.+
T Consensus 32 ~~~~d~iQ~----~l~CCG~~~----~~Dw~~---~~vP~ScC~~ 65 (90)
T 1g8q_A 32 KAVVKTFHE----TLDCCGSST----LTALTT---SVLKNNLCPS 65 (90)
T ss_dssp HHHHHHHHH----HHTCCSCTT----CGGGHH---HHHHTTCSCT
T ss_pred HHHHHHHHH----hhcCCCCCC----hhhhcc---CCCCCCCCCC
Confidence 468999876 889999775 678853 3589999953
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.92 E-value=25 Score=22.06 Aligned_cols=26 Identities=0% Similarity=0.001 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024319 230 ANIILIVAVVILIWVYLIACSAFKNA 255 (269)
Q Consensus 230 i~~~~i~v~~~~i~~~~~ac~l~r~~ 255 (269)
+++..++++++.+++.+++.++.|+.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhh
Confidence 34444445566666666666666543
No 3
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=45.16 E-value=7.5 Score=21.30 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=8.6
Q ss_pred ccccCCCCCCC
Q 024319 167 ARCCKPPTICG 177 (269)
Q Consensus 167 ~sCC~~p~~Cg 177 (269)
..||++|.+|.
T Consensus 2 r~CC~~Pk~Ck 12 (26)
T 1r9i_A 2 RLCCGFPKSCR 12 (26)
T ss_dssp CTTTTSTTGGG
T ss_pred CcccCCCCccc
Confidence 36999998884
No 4
>1gib_A MU-conotoxin GIIIB; neurotoxin, sodium channel inhibitor; HET: HYP; NMR {Conus geographus} SCOP: j.30.1.1 PDB: 1tcg_A* 1tcj_A* 1tch_A* 1tck_A*
Probab=28.84 E-value=20 Score=19.46 Aligned_cols=9 Identities=56% Similarity=1.715 Sum_probs=7.3
Q ss_pred ccCCCCCCC
Q 024319 169 CCKPPTICG 177 (269)
Q Consensus 169 CC~~p~~Cg 177 (269)
||.||-+|.
T Consensus 3 cc~~p~~ck 11 (26)
T 1gib_A 3 CCTPPRKCK 11 (26)
T ss_dssp SSSSSCCCC
T ss_pred ccCCCcccc
Confidence 888888884
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.58 E-value=1.2e+02 Score=18.88 Aligned_cols=17 Identities=6% Similarity=-0.042 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024319 231 NIILIVAVVILIWVYLI 247 (269)
Q Consensus 231 ~~~~i~v~~~~i~~~~~ 247 (269)
+++--+++++.+++...
T Consensus 14 ~gVVgGv~~v~ii~~~~ 30 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTF 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHH
Confidence 33333344444444333
No 6
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.65 E-value=2.4e+02 Score=20.12 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhccCCCccch-hhhhHHHHHHHHHHHHHHhhhhhhhccchhhHH-HHHHHHHHHHHHHHHHHhhhh
Q 024319 16 LLCSIPIIASGIWLASKPDNECIH-LFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLA-FYLCVMAILIVLLLVVLVFAF 93 (269)
Q Consensus 16 ~l~G~~ll~~Gi~~~~~~~~~~~~-~~~~pli~~G~~~~~vs~~Gc~Ga~~es~~lL~-~y~~~l~ll~~~el~~~i~~~ 93 (269)
.+++..+..+|+|....+ ...-. ....-++..++.+.++.+.-..+.. .. .+..+.+++-..|.+.|....
T Consensus 8 ~~~~~~lf~iGl~g~~~r-~~ll~~LlslE~m~l~v~l~l~~~~~~~~~~------~~~~~~l~~l~~aa~E~alGLall 80 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIR-RNLLFMLIGLEIMINASALAFVVAGSYWGQT------DGQVMYILAISLAAAEASIGLALL 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHC-CBHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888855443 22111 2223356667766666554433311 12 233444445556877766555
Q ss_pred e
Q 024319 94 V 94 (269)
Q Consensus 94 ~ 94 (269)
+
T Consensus 81 v 81 (100)
T 3rko_K 81 L 81 (100)
T ss_dssp H
T ss_pred H
Confidence 5
No 7
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=19.49 E-value=42 Score=21.45 Aligned_cols=18 Identities=44% Similarity=1.099 Sum_probs=13.0
Q ss_pred CccccCccccccCcchHHH
Q 024319 200 LWSNDQSQLCYNCSSCKAG 218 (269)
Q Consensus 200 ~~~n~~~~lCy~c~~Ck~~ 218 (269)
.|+.|-+ .|-+|.+|++.
T Consensus 14 swS~DLd-KCmdcs~C~~~ 31 (53)
T 2kmz_A 14 SWSADLD-KCMDCASCRAR 31 (53)
T ss_dssp BCCTTTT-CCBCSTTCSSC
T ss_pred ccchhhh-hhhccccCCCC
Confidence 4776665 78888888753
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=18.45 E-value=1.2e+02 Score=18.75 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 024319 230 ANIILIVAVVILIWVYLIACSAF 252 (269)
Q Consensus 230 i~~~~i~v~~~~i~~~~~ac~l~ 252 (269)
.+++--+++++.+++..+...+.
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehhHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444333333
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=18.37 E-value=1.3e+02 Score=22.65 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024319 229 KANIILIVAVVILIWVYLIAC 249 (269)
Q Consensus 229 ~i~~~~i~v~~~~i~~~~~ac 249 (269)
...+++++++++.++.++..|
T Consensus 98 ~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 98 MMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhee
Confidence 333444444444444444433
No 10
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=16.02 E-value=1.9e+02 Score=17.09 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=16.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhhhhchh
Q 024319 231 NIILIVA-VVILIWVYLIACSAFKNAQTE 258 (269)
Q Consensus 231 ~~~~i~v-~~~~i~~~~~ac~l~r~~~~~ 258 (269)
+++++++ +++.++...+...-||..+|+
T Consensus 7 ~ivalivalIiaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555554 444555556666777766654
Done!