Query 024322
Match_columns 269
No_of_seqs 130 out of 1326
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2.1E-51 4.5E-56 371.2 22.5 210 36-266 1-219 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 7E-51 1.5E-55 363.4 20.9 221 30-268 6-232 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 1.2E-48 2.6E-53 358.1 23.4 217 33-265 10-235 (346)
4 COG0656 ARA1 Aldo/keto reducta 100.0 3.3E-49 7.1E-54 346.5 18.1 192 35-259 2-196 (280)
5 TIGR01293 Kv_beta voltage-depe 100.0 6.9E-48 1.5E-52 349.2 22.9 211 38-265 1-218 (317)
6 PRK10625 tas putative aldo-ket 100.0 5E-47 1.1E-51 347.5 23.1 210 36-265 1-246 (346)
7 PLN02587 L-galactose dehydroge 100.0 2.7E-46 5.9E-51 338.3 21.5 210 38-264 1-216 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 6.8E-45 1.5E-49 324.1 22.7 207 38-266 1-212 (285)
9 KOG1577 Aldo/keto reductase fa 100.0 1E-45 2.2E-50 324.8 16.3 191 38-260 6-215 (300)
10 COG4989 Predicted oxidoreducta 100.0 6.2E-44 1.3E-48 302.4 13.1 205 36-260 1-216 (298)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 7.7E-43 1.7E-47 309.1 20.0 183 46-261 1-187 (267)
12 PRK14863 bifunctional regulato 100.0 4.8E-43 1E-47 314.0 17.9 198 45-263 2-202 (292)
13 PRK10376 putative oxidoreducta 100.0 4.3E-42 9.3E-47 307.7 21.6 197 38-258 9-218 (290)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.5E-42 5.4E-47 307.3 17.6 196 50-266 1-201 (283)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.5E-40 3.3E-45 295.6 19.5 186 38-259 6-193 (275)
16 COG1453 Predicted oxidoreducta 100.0 6E-38 1.3E-42 279.1 16.7 205 36-262 1-212 (391)
17 KOG1576 Predicted oxidoreducta 100.0 4.4E-37 9.6E-42 262.6 15.3 208 34-263 20-240 (342)
18 KOG3023 Glutamate-cysteine lig 98.5 2.9E-07 6.2E-12 78.6 6.4 73 176-253 155-227 (285)
19 PRK08392 hypothetical protein; 93.8 3.8 8.2E-05 34.9 14.5 152 76-250 15-178 (215)
20 cd03319 L-Ala-DL-Glu_epimerase 93.3 4.1 8.9E-05 36.7 14.7 157 73-258 134-291 (316)
21 cd03315 MLE_like Muconate lact 92.2 6 0.00013 34.7 13.8 158 74-259 86-244 (265)
22 PRK07328 histidinol-phosphatas 91.7 8.9 0.00019 33.8 16.1 167 76-250 19-225 (269)
23 PRK00164 moaA molybdenum cofac 91.5 9.4 0.0002 34.6 14.7 162 70-252 47-229 (331)
24 PRK13796 GTPase YqeH; Provisio 91.4 4.2 9E-05 37.7 12.4 144 49-209 34-181 (365)
25 PRK13361 molybdenum cofactor b 91.2 12 0.00025 34.1 15.2 140 70-230 43-195 (329)
26 PRK08609 hypothetical protein; 91.2 10 0.00022 37.5 15.3 163 77-254 351-525 (570)
27 PRK07945 hypothetical protein; 91.0 13 0.00027 34.2 16.1 162 75-250 111-288 (335)
28 PF03102 NeuB: NeuB family; I 90.8 2.1 4.4E-05 37.5 9.1 118 72-211 53-191 (241)
29 cd03316 MR_like Mandelate race 90.4 9.9 0.00021 34.8 13.9 158 73-254 139-299 (357)
30 KOG0023 Alcohol dehydrogenase, 89.8 0.95 2.1E-05 41.1 6.2 153 31-248 169-323 (360)
31 TIGR01928 menC_lowGC/arch o-su 87.0 23 0.00051 32.1 14.2 154 74-259 133-287 (324)
32 PF07021 MetW: Methionine bios 86.4 3.5 7.7E-05 34.7 7.3 153 79-259 5-172 (193)
33 PLN02681 proline dehydrogenase 85.5 35 0.00076 32.7 14.4 171 75-257 220-413 (455)
34 TIGR02666 moaA molybdenum cofa 85.4 28 0.00061 31.5 14.6 133 70-221 41-187 (334)
35 PRK06740 histidinol-phosphatas 84.8 16 0.00034 33.5 11.4 101 149-251 156-289 (331)
36 cd03174 DRE_TIM_metallolyase D 83.7 6.7 0.00014 34.1 8.3 107 140-253 14-135 (265)
37 KOG1549 Cysteine desulfurase N 82.9 6.4 0.00014 37.2 8.0 166 77-260 59-225 (428)
38 COG1748 LYS9 Saccharopine dehy 82.1 7.5 0.00016 36.4 8.2 80 75-173 79-158 (389)
39 PRK05588 histidinol-phosphatas 82.1 33 0.00072 29.8 16.3 169 75-256 16-219 (255)
40 cd03325 D-galactonate_dehydrat 81.4 44 0.00095 30.7 13.4 159 74-253 124-285 (352)
41 COG2089 SpsE Sialic acid synth 81.2 36 0.00078 31.1 11.8 122 71-212 86-226 (347)
42 cd03321 mandelate_racemase Man 80.5 28 0.00061 31.9 11.5 153 74-253 142-295 (355)
43 KOG0259 Tyrosine aminotransfer 80.4 52 0.0011 30.9 14.9 167 75-264 81-278 (447)
44 cd00308 enolase_like Enolase-s 80.2 7.1 0.00015 33.4 7.0 89 163-259 120-209 (229)
45 TIGR02370 pyl_corrinoid methyl 79.7 10 0.00022 31.9 7.6 23 72-94 9-31 (197)
46 PF00682 HMGL-like: HMGL-like 79.4 37 0.00081 29.0 11.3 127 72-216 11-150 (237)
47 cd00739 DHPS DHPS subgroup of 79.3 43 0.00092 29.5 11.7 108 79-201 87-209 (257)
48 TIGR03597 GTPase_YqeH ribosome 79.1 30 0.00066 31.9 11.2 145 49-210 28-176 (360)
49 cd01965 Nitrogenase_MoFe_beta_ 75.6 27 0.0006 32.9 10.1 110 110-222 66-188 (428)
50 COG4464 CapC Capsular polysacc 74.9 13 0.00029 32.0 6.8 120 69-195 14-134 (254)
51 COG0635 HemN Coproporphyrinoge 74.8 20 0.00044 33.9 8.9 112 48-202 148-276 (416)
52 PRK09058 coproporphyrinogen II 73.4 64 0.0014 30.8 12.0 29 140-169 225-253 (449)
53 PRK07534 methionine synthase I 73.1 76 0.0016 29.1 15.6 153 73-228 43-214 (336)
54 cd03322 rpsA The starvation se 72.8 16 0.00035 33.7 7.6 85 163-255 189-274 (361)
55 PRK07329 hypothetical protein; 72.6 64 0.0014 28.0 12.4 108 148-256 82-218 (246)
56 TIGR01862 N2-ase-Ialpha nitrog 72.5 43 0.00092 31.9 10.6 105 110-221 102-222 (443)
57 cd02930 DCR_FMN 2,4-dienoyl-Co 72.5 70 0.0015 29.4 11.8 92 127-224 203-305 (353)
58 COG0135 TrpF Phosphoribosylant 72.5 23 0.00051 30.2 7.9 82 155-250 18-102 (208)
59 cd03323 D-glucarate_dehydratas 72.5 77 0.0017 29.7 12.2 82 164-255 239-321 (395)
60 PRK13958 N-(5'-phosphoribosyl) 72.3 12 0.00025 31.9 6.1 66 154-226 16-83 (207)
61 PRK15408 autoinducer 2-binding 72.1 67 0.0014 29.2 11.4 90 126-223 23-112 (336)
62 COG1149 MinD superfamily P-loo 72.1 10 0.00023 33.7 5.8 92 155-257 156-250 (284)
63 PRK14461 ribosomal RNA large s 71.6 53 0.0011 30.7 10.5 92 166-257 232-352 (371)
64 cd03324 rTSbeta_L-fuconate_deh 71.2 95 0.002 29.4 12.8 152 74-253 197-352 (415)
65 cd03318 MLE Muconate Lactonizi 70.5 14 0.0003 34.1 6.6 73 179-256 227-300 (365)
66 TIGR01428 HAD_type_II 2-haloal 70.4 23 0.00049 29.2 7.4 64 147-211 61-128 (198)
67 cd01974 Nitrogenase_MoFe_beta 69.7 43 0.00094 31.7 9.9 115 94-220 63-191 (435)
68 TIGR00735 hisF imidazoleglycer 69.4 76 0.0017 27.6 12.2 88 154-249 163-253 (254)
69 PRK00912 ribonuclease P protei 69.4 73 0.0016 27.4 10.7 145 75-251 16-172 (237)
70 cd00740 MeTr MeTr subgroup of 69.0 78 0.0017 27.7 10.7 108 142-258 23-131 (252)
71 cd03327 MR_like_2 Mandelate ra 69.0 92 0.002 28.4 13.2 83 163-253 197-280 (341)
72 PRK15072 bifunctional D-altron 68.8 20 0.00044 33.6 7.4 85 163-255 232-317 (404)
73 cd02070 corrinoid_protein_B12- 68.7 49 0.0011 27.7 9.1 22 73-94 9-30 (201)
74 PF05690 ThiG: Thiazole biosyn 68.2 24 0.00052 30.8 7.0 168 49-253 9-182 (247)
75 PRK05985 cytosine deaminase; P 68.1 1E+02 0.0022 28.5 14.2 18 75-92 98-115 (391)
76 TIGR02668 moaA_archaeal probab 68.1 88 0.0019 27.8 14.0 136 71-229 39-188 (302)
77 cd01966 Nitrogenase_NifN_1 Nit 67.5 86 0.0019 29.6 11.4 114 96-221 61-189 (417)
78 PRK05692 hydroxymethylglutaryl 66.9 20 0.00043 32.1 6.6 104 142-251 23-138 (287)
79 PF01619 Pro_dh: Proline dehyd 66.7 87 0.0019 28.3 10.9 164 75-256 92-283 (313)
80 TIGR03822 AblA_like_2 lysine-2 66.5 1E+02 0.0022 28.0 15.5 137 72-221 119-263 (321)
81 TIGR01228 hutU urocanate hydra 66.4 16 0.00034 35.2 6.0 91 126-226 157-258 (545)
82 PRK05414 urocanate hydratase; 66.2 17 0.00036 35.2 6.2 91 126-226 166-267 (556)
83 COG3623 SgaU Putative L-xylulo 65.9 8.8 0.00019 33.4 3.9 81 43-135 65-155 (287)
84 TIGR02534 mucon_cyclo muconate 65.8 18 0.00039 33.4 6.4 75 179-258 226-301 (368)
85 PF00148 Oxidored_nitro: Nitro 65.2 27 0.00059 32.4 7.5 140 110-255 59-226 (398)
86 PLN02591 tryptophan synthase 65.0 97 0.0021 27.2 13.6 124 72-221 13-136 (250)
87 cd01973 Nitrogenase_VFe_beta_l 65.0 74 0.0016 30.5 10.5 114 95-221 65-193 (454)
88 COG1387 HIS2 Histidinol phosph 64.7 94 0.002 26.9 10.6 153 78-250 19-190 (237)
89 COG2200 Rtn c-di-GMP phosphodi 64.4 93 0.002 27.1 10.3 134 110-254 69-214 (256)
90 PLN02746 hydroxymethylglutaryl 64.3 43 0.00093 30.9 8.4 96 147-250 69-179 (347)
91 cd08613 GDPD_GDE4_like_1 Glyce 64.1 1E+02 0.0022 28.1 10.6 45 220-266 237-284 (309)
92 CHL00076 chlB photochlorophyll 64.0 77 0.0017 30.9 10.6 140 110-256 70-248 (513)
93 cd03329 MR_like_4 Mandelate ra 64.0 1.2E+02 0.0026 27.9 14.7 154 73-253 143-299 (368)
94 PRK08123 histidinol-phosphatas 63.8 1E+02 0.0022 27.1 12.6 72 178-250 153-246 (270)
95 TIGR01210 conserved hypothetic 63.8 96 0.0021 28.0 10.6 39 180-218 117-170 (313)
96 cd02069 methionine_synthase_B1 63.6 45 0.00097 28.5 7.9 23 72-94 12-34 (213)
97 cd01981 Pchlide_reductase_B Pc 63.5 77 0.0017 29.9 10.3 106 110-221 70-197 (430)
98 cd07944 DRE_TIM_HOA_like 4-hyd 63.3 46 0.001 29.3 8.2 58 140-199 15-79 (266)
99 PF03279 Lip_A_acyltrans: Bact 63.2 69 0.0015 28.3 9.5 67 78-164 110-176 (295)
100 PRK01222 N-(5'-phosphoribosyl) 62.8 21 0.00046 30.3 5.8 65 155-226 19-85 (210)
101 PRK07003 DNA polymerase III su 62.0 2E+02 0.0044 29.8 13.4 97 142-248 99-197 (830)
102 PLN02428 lipoic acid synthase 61.8 1.4E+02 0.0029 27.7 14.7 165 72-257 130-325 (349)
103 PLN02951 Molybderin biosynthes 61.8 1.4E+02 0.003 27.8 15.2 154 71-245 89-262 (373)
104 PRK12323 DNA polymerase III su 61.7 1.9E+02 0.0041 29.4 14.0 71 142-213 104-176 (700)
105 TIGR03586 PseI pseudaminic aci 61.4 1.3E+02 0.0029 27.5 11.5 133 72-229 74-226 (327)
106 COG2069 CdhD CO dehydrogenase/ 60.9 87 0.0019 28.4 9.3 92 155-256 160-261 (403)
107 PTZ00413 lipoate synthase; Pro 60.6 1.5E+02 0.0033 27.9 13.7 171 70-257 175-373 (398)
108 cd04742 NPD_FabD 2-Nitropropan 60.5 46 0.00099 31.6 8.0 72 181-254 29-103 (418)
109 TIGR01278 DPOR_BchB light-inde 60.2 1.1E+02 0.0025 29.6 11.0 106 110-222 70-194 (511)
110 PF13407 Peripla_BP_4: Peripla 60.1 39 0.00084 28.6 7.1 77 144-225 13-89 (257)
111 PF00682 HMGL-like: HMGL-like 60.0 61 0.0013 27.6 8.3 103 141-249 10-124 (237)
112 cd01967 Nitrogenase_MoFe_alpha 60.0 98 0.0021 28.8 10.3 105 110-221 72-191 (406)
113 PF00290 Trp_syntA: Tryptophan 59.8 1.2E+02 0.0027 26.7 12.4 121 73-218 22-142 (259)
114 cd07943 DRE_TIM_HOA 4-hydroxy- 59.7 1.2E+02 0.0026 26.5 15.7 24 72-95 19-42 (263)
115 TIGR01496 DHPS dihydropteroate 59.6 1.2E+02 0.0027 26.6 10.2 100 142-254 20-126 (257)
116 PRK14478 nitrogenase molybdenu 59.6 1.2E+02 0.0026 29.2 10.9 108 95-220 98-221 (475)
117 cd00408 DHDPS-like Dihydrodipi 59.6 1.2E+02 0.0027 26.5 13.5 133 70-210 13-171 (281)
118 cd04734 OYE_like_3_FMN Old yel 59.5 1.4E+02 0.0031 27.3 12.9 81 127-211 207-306 (343)
119 PRK14017 galactonate dehydrata 59.3 36 0.00077 31.6 7.1 84 163-254 203-287 (382)
120 TIGR00048 radical SAM enzyme, 59.2 78 0.0017 29.3 9.3 91 166-258 219-334 (355)
121 cd08556 GDPD Glycerophosphodie 59.2 92 0.002 25.0 11.9 156 74-254 12-168 (189)
122 PLN02363 phosphoribosylanthran 59.2 31 0.00067 30.4 6.3 80 133-226 49-130 (256)
123 TIGR03569 NeuB_NnaB N-acetylne 59.2 1.5E+02 0.0032 27.3 12.0 135 72-229 73-227 (329)
124 PRK14459 ribosomal RNA large s 59.2 1.3E+02 0.0028 28.1 10.7 95 165-259 241-361 (373)
125 TIGR01856 hisJ_fam histidinol 59.1 1.2E+02 0.0026 26.3 14.1 168 75-250 15-233 (253)
126 PF01175 Urocanase: Urocanase; 59.0 30 0.00064 33.6 6.4 86 125-227 155-258 (546)
127 TIGR03217 4OH_2_O_val_ald 4-hy 59.0 62 0.0013 29.7 8.5 105 140-252 19-133 (333)
128 cd01968 Nitrogenase_NifE_I Nit 58.7 1.1E+02 0.0025 28.5 10.5 112 94-221 64-189 (410)
129 PRK08195 4-hyroxy-2-oxovalerat 58.5 62 0.0013 29.7 8.4 11 155-165 34-44 (337)
130 TIGR02026 BchE magnesium-proto 58.4 1.3E+02 0.0027 29.2 10.9 68 175-247 321-392 (497)
131 cd00405 PRAI Phosphoribosylant 58.3 53 0.0011 27.4 7.5 41 162-205 73-113 (203)
132 PF04748 Polysacc_deac_2: Dive 58.0 1.1E+02 0.0023 26.2 9.3 124 72-217 71-203 (213)
133 TIGR01182 eda Entner-Doudoroff 58.0 1.2E+02 0.0026 25.8 9.5 89 142-251 17-106 (204)
134 TIGR03849 arch_ComA phosphosul 57.9 76 0.0016 27.7 8.3 98 149-250 12-117 (237)
135 COG1751 Uncharacterized conser 57.8 72 0.0016 26.0 7.5 90 166-258 2-95 (186)
136 PRK02910 light-independent pro 57.8 1.4E+02 0.003 29.2 11.1 105 110-222 70-194 (519)
137 cd07940 DRE_TIM_IPMS 2-isoprop 57.6 1.3E+02 0.0029 26.3 13.4 86 175-263 141-231 (268)
138 PRK09485 mmuM homocysteine met 57.5 1.5E+02 0.0032 26.7 16.5 115 73-189 44-178 (304)
139 cd02932 OYE_YqiM_FMN Old yello 57.2 1.5E+02 0.0033 26.9 12.3 81 127-211 220-311 (336)
140 COG1167 ARO8 Transcriptional r 57.2 1.8E+02 0.0039 27.7 14.2 154 71-252 103-266 (459)
141 cd07943 DRE_TIM_HOA 4-hydroxy- 57.1 77 0.0017 27.7 8.6 13 155-167 31-43 (263)
142 TIGR00190 thiC thiamine biosyn 56.9 51 0.0011 31.0 7.4 151 74-254 76-264 (423)
143 COG0279 GmhA Phosphoheptose is 56.8 1.1E+02 0.0024 25.3 9.7 124 74-210 27-155 (176)
144 PRK08446 coproporphyrinogen II 56.4 1.2E+02 0.0026 27.8 10.0 89 73-201 132-230 (350)
145 PRK14476 nitrogenase molybdenu 56.2 72 0.0016 30.5 8.8 113 96-220 72-199 (455)
146 COG1140 NarY Nitrate reductase 56.1 4.2 9.2E-05 37.7 0.3 55 189-248 263-317 (513)
147 PRK08645 bifunctional homocyst 56.0 2.2E+02 0.0048 28.4 13.7 115 73-190 41-164 (612)
148 PLN00191 enolase 55.9 67 0.0014 30.9 8.4 98 142-252 295-394 (457)
149 PRK14457 ribosomal RNA large s 55.7 1.7E+02 0.0037 27.0 11.4 138 111-257 165-330 (345)
150 PRK00730 rnpA ribonuclease P; 55.3 59 0.0013 25.9 6.7 61 126-189 47-110 (138)
151 cd03317 NAAAR N-acylamino acid 54.9 1.7E+02 0.0036 26.7 14.3 151 75-257 139-290 (354)
152 PRK10128 2-keto-3-deoxy-L-rham 54.5 1.6E+02 0.0034 26.2 10.4 68 158-231 165-245 (267)
153 TIGR01502 B_methylAsp_ase meth 54.4 63 0.0014 30.5 7.9 84 167-255 267-357 (408)
154 cd06543 GH18_PF-ChiA-like PF-C 54.3 1.6E+02 0.0036 26.4 13.4 186 50-258 71-265 (294)
155 COG0159 TrpA Tryptophan syntha 54.1 1.1E+02 0.0023 27.2 8.8 72 177-255 79-156 (265)
156 COG2040 MHT1 Homocysteine/sele 53.7 1.3E+02 0.0029 27.0 9.2 174 74-254 42-241 (300)
157 KOG1321 Protoheme ferro-lyase 53.7 24 0.00051 32.2 4.6 63 179-244 142-211 (395)
158 PRK14463 ribosomal RNA large s 53.6 1.3E+02 0.0028 27.8 9.7 90 166-257 211-325 (349)
159 COG0218 Predicted GTPase [Gene 53.5 1.4E+02 0.003 25.4 11.8 101 73-189 89-198 (200)
160 PRK06015 keto-hydroxyglutarate 53.4 73 0.0016 27.0 7.4 88 143-251 14-102 (201)
161 TIGR00381 cdhD CO dehydrogenas 53.3 2E+02 0.0043 27.0 11.0 92 162-260 153-254 (389)
162 COG2987 HutU Urocanate hydrata 53.2 45 0.00097 31.9 6.5 102 110-222 151-261 (561)
163 PRK05660 HemN family oxidoredu 53.1 1.9E+02 0.0042 26.8 13.0 41 176-216 142-187 (378)
164 PRK13505 formate--tetrahydrofo 53.0 30 0.00065 33.9 5.5 54 203-257 359-412 (557)
165 PRK00077 eno enolase; Provisio 52.8 92 0.002 29.5 8.8 96 143-251 262-361 (425)
166 TIGR01060 eno phosphopyruvate 52.8 99 0.0022 29.3 9.0 98 143-253 263-365 (425)
167 TIGR01283 nifE nitrogenase mol 52.7 1.4E+02 0.0031 28.4 10.2 103 110-221 106-228 (456)
168 PRK08776 cystathionine gamma-s 52.7 2E+02 0.0044 26.9 11.1 16 204-219 163-178 (405)
169 cd00739 DHPS DHPS subgroup of 52.6 1.6E+02 0.0035 25.8 10.9 101 142-254 21-128 (257)
170 PRK14453 chloramphenicol/florf 52.6 1.9E+02 0.0042 26.6 10.6 98 161-258 203-331 (347)
171 TIGR02932 vnfK_nitrog V-contai 52.6 90 0.002 29.9 8.8 115 95-222 68-198 (457)
172 PRK13352 thiamine biosynthesis 52.6 67 0.0015 30.4 7.5 158 74-254 76-267 (431)
173 PRK05301 pyrroloquinoline quin 52.4 1.9E+02 0.0041 26.6 13.9 129 70-218 44-184 (378)
174 cd04728 ThiG Thiazole synthase 52.4 1.6E+02 0.0036 25.8 15.5 107 140-253 71-182 (248)
175 PRK13478 phosphonoacetaldehyde 52.3 77 0.0017 27.5 7.8 37 176-213 103-139 (267)
176 cd01976 Nitrogenase_MoFe_alpha 52.2 2.1E+02 0.0046 27.0 11.3 102 110-220 83-202 (421)
177 COG1560 HtrB Lauroyl/myristoyl 52.2 1.4E+02 0.0031 27.1 9.5 69 76-164 110-178 (308)
178 TIGR01422 phosphonatase phosph 52.2 76 0.0016 27.2 7.6 37 176-213 101-137 (253)
179 COG2022 ThiG Uncharacterized e 51.9 1.6E+02 0.0034 25.8 9.1 54 140-193 78-133 (262)
180 PRK14477 bifunctional nitrogen 51.8 1.1E+02 0.0023 32.2 9.8 109 110-221 556-676 (917)
181 cd01948 EAL EAL domain. This d 51.1 1.1E+02 0.0023 25.5 8.3 102 144-254 97-210 (240)
182 PF01081 Aldolase: KDPG and KH 50.8 74 0.0016 26.9 7.0 61 178-251 45-106 (196)
183 TIGR03699 mena_SCO4550 menaqui 50.5 2E+02 0.0042 26.1 12.5 128 72-216 72-223 (340)
184 PRK02412 aroD 3-dehydroquinate 50.5 1.7E+02 0.0037 25.5 15.3 172 74-261 27-212 (253)
185 TIGR00930 2a30 K-Cl cotranspor 50.4 1.1E+02 0.0024 32.3 9.6 90 88-187 759-848 (953)
186 PRK15440 L-rhamnonate dehydrat 50.3 43 0.00093 31.4 6.1 69 179-252 247-318 (394)
187 TIGR00683 nanA N-acetylneurami 50.2 1.9E+02 0.004 25.8 13.6 134 70-210 16-176 (290)
188 PRK10550 tRNA-dihydrouridine s 50.0 2E+02 0.0043 26.1 12.8 130 73-211 73-215 (312)
189 COG1168 MalY Bifunctional PLP- 49.9 2.2E+02 0.0049 26.6 14.6 134 75-231 41-206 (388)
190 TIGR03471 HpnJ hopanoid biosyn 49.5 2.4E+02 0.0052 26.9 11.5 69 175-248 321-393 (472)
191 PF05913 DUF871: Bacterial pro 49.3 7.3 0.00016 36.1 0.8 158 73-257 12-180 (357)
192 PRK14455 ribosomal RNA large s 49.3 1.4E+02 0.0031 27.6 9.3 90 166-257 223-337 (356)
193 cd00959 DeoC 2-deoxyribose-5-p 48.9 1.6E+02 0.0034 24.6 14.9 159 73-252 15-180 (203)
194 PRK14464 ribosomal RNA large s 48.3 1.1E+02 0.0025 28.2 8.4 82 174-257 223-317 (344)
195 COG2185 Sbm Methylmalonyl-CoA 48.2 1.4E+02 0.0031 23.9 12.4 109 75-210 26-135 (143)
196 PRK01313 rnpA ribonuclease P; 48.2 97 0.0021 24.3 6.9 60 126-188 48-113 (129)
197 PRK08208 coproporphyrinogen II 48.1 2.5E+02 0.0053 26.6 13.3 41 176-216 176-221 (430)
198 cd01989 STK_N The N-terminal d 48.0 1.2E+02 0.0027 23.1 10.6 59 203-266 65-123 (146)
199 TIGR02090 LEU1_arch isopropylm 47.7 2E+02 0.0043 26.6 10.0 26 72-97 19-44 (363)
200 COG2159 Predicted metal-depend 47.7 88 0.0019 28.0 7.5 102 155-258 55-169 (293)
201 PRK09140 2-dehydro-3-deoxy-6-p 47.6 1.7E+02 0.0038 24.7 12.6 104 72-210 19-122 (206)
202 PRK04452 acetyl-CoA decarbonyl 47.3 1.9E+02 0.0041 26.5 9.5 95 153-255 83-184 (319)
203 cd04740 DHOD_1B_like Dihydroor 47.2 2E+02 0.0044 25.4 12.7 158 74-247 101-286 (296)
204 cd03320 OSBS o-Succinylbenzoat 47.1 55 0.0012 28.6 6.0 87 163-258 153-239 (263)
205 KOG0053 Cystathionine beta-lya 46.9 2E+02 0.0043 27.3 9.7 61 201-262 148-208 (409)
206 cd03328 MR_like_3 Mandelate ra 46.8 2.3E+02 0.005 25.9 13.4 153 73-253 138-293 (352)
207 TIGR01285 nifN nitrogenase mol 46.7 2E+02 0.0044 27.2 10.1 114 96-221 71-199 (432)
208 cd03174 DRE_TIM_metallolyase D 46.6 1.9E+02 0.0041 24.8 15.2 24 72-95 16-39 (265)
209 PF10566 Glyco_hydro_97: Glyco 46.2 83 0.0018 28.0 6.9 57 199-255 28-95 (273)
210 PRK14467 ribosomal RNA large s 45.9 2E+02 0.0043 26.6 9.6 99 162-260 208-332 (348)
211 PRK09427 bifunctional indole-3 45.4 93 0.002 29.9 7.6 63 156-227 274-338 (454)
212 PRK04390 rnpA ribonuclease P; 45.1 1.2E+02 0.0026 23.3 6.9 62 126-189 45-110 (120)
213 TIGR01212 radical SAM protein, 44.8 2.3E+02 0.005 25.4 14.2 115 139-257 88-220 (302)
214 smart00633 Glyco_10 Glycosyl h 44.6 1.3E+02 0.0027 26.2 7.8 109 144-255 102-227 (254)
215 cd01971 Nitrogenase_VnfN_like 44.6 1.3E+02 0.0028 28.4 8.4 106 110-222 71-192 (427)
216 KOG3131 Uncharacterized conser 44.4 2.2E+02 0.0048 25.0 9.1 112 126-257 25-150 (281)
217 COG1751 Uncharacterized conser 44.4 1E+02 0.0022 25.1 6.4 74 73-161 12-85 (186)
218 PRK14466 ribosomal RNA large s 44.0 2.6E+02 0.0055 25.9 9.9 91 165-257 210-325 (345)
219 PF00762 Ferrochelatase: Ferro 43.9 1.1E+02 0.0024 27.8 7.5 64 144-208 206-273 (316)
220 PTZ00081 enolase; Provisional 43.9 1.7E+02 0.0037 28.0 9.0 97 142-251 281-381 (439)
221 TIGR01927 menC_gamma/gm+ o-suc 43.8 1.3E+02 0.0029 27.0 8.0 87 163-259 183-270 (307)
222 PF02679 ComA: (2R)-phospho-3- 43.8 55 0.0012 28.7 5.3 101 148-251 24-131 (244)
223 PRK00208 thiG thiazole synthas 43.6 2.3E+02 0.005 25.0 15.5 107 140-253 71-182 (250)
224 cd02933 OYE_like_FMN Old yello 43.4 2.6E+02 0.0057 25.5 12.9 18 77-94 154-171 (338)
225 cd00950 DHDPS Dihydrodipicolin 43.4 2.3E+02 0.005 24.9 12.6 132 70-209 16-173 (284)
226 TIGR01496 DHPS dihydropteroate 43.3 2.3E+02 0.005 24.8 12.8 107 80-201 87-207 (257)
227 TIGR00238 KamA family protein. 42.8 2.6E+02 0.0057 25.4 13.0 135 74-219 144-284 (331)
228 PRK13210 putative L-xylulose 5 42.7 2.2E+02 0.0049 24.6 10.6 106 147-255 18-154 (284)
229 cd07938 DRE_TIM_HMGL 3-hydroxy 42.6 2.4E+02 0.0052 24.9 14.9 26 71-96 16-41 (274)
230 PF13378 MR_MLE_C: Enolase C-t 42.5 20 0.00043 26.7 2.2 51 199-254 4-54 (111)
231 COG4981 Enoyl reductase domain 42.4 1.8E+02 0.0038 28.8 8.7 118 141-259 69-226 (717)
232 cd01321 ADGF Adenosine deamina 42.4 2.7E+02 0.0059 25.5 11.4 20 75-94 70-89 (345)
233 PRK05660 HemN family oxidoredu 42.3 1.6E+02 0.0035 27.2 8.6 61 140-202 169-243 (378)
234 PRK13347 coproporphyrinogen II 42.1 1.5E+02 0.0033 28.2 8.5 113 78-202 152-291 (453)
235 PRK03459 rnpA ribonuclease P; 41.9 1.2E+02 0.0026 23.4 6.5 61 126-189 49-114 (122)
236 PRK00499 rnpA ribonuclease P; 41.8 1.2E+02 0.0026 22.9 6.4 61 126-189 39-104 (114)
237 TIGR00398 metG methionyl-tRNA 41.6 1.7E+02 0.0036 28.4 8.9 47 145-193 68-114 (530)
238 PRK07535 methyltetrahydrofolat 41.5 2.5E+02 0.0053 24.7 9.6 107 80-201 81-200 (261)
239 PRK10551 phage resistance prot 41.5 2E+02 0.0043 28.0 9.4 116 128-254 349-475 (518)
240 TIGR00126 deoC deoxyribose-pho 41.4 2.2E+02 0.0049 24.2 15.4 160 72-252 15-181 (211)
241 KOG1196 Predicted NAD-dependen 41.4 45 0.00097 30.3 4.4 99 76-195 211-310 (343)
242 TIGR01286 nifK nitrogenase mol 41.4 1.7E+02 0.0036 28.6 8.8 115 94-221 120-252 (515)
243 KOG0922 DEAH-box RNA helicase 41.4 29 0.00063 34.6 3.5 39 153-193 413-451 (674)
244 PRK06552 keto-hydroxyglutarate 41.1 1.5E+02 0.0032 25.3 7.5 89 142-251 22-114 (213)
245 PRK10508 hypothetical protein; 41.1 38 0.00083 31.0 4.1 43 142-188 286-328 (333)
246 PRK03031 rnpA ribonuclease P; 40.7 1.3E+02 0.0028 23.2 6.5 62 126-189 48-114 (122)
247 PF06415 iPGM_N: BPG-independe 40.6 1.4E+02 0.003 25.8 7.2 16 203-218 46-61 (223)
248 PLN02389 biotin synthase 40.3 3.1E+02 0.0068 25.6 13.2 127 71-215 115-254 (379)
249 COG2873 MET17 O-acetylhomoseri 40.3 3.2E+02 0.007 25.7 10.2 63 77-161 66-128 (426)
250 PRK10658 putative alpha-glucos 40.2 1.6E+02 0.0034 29.8 8.6 90 161-253 234-345 (665)
251 TIGR01163 rpe ribulose-phospha 40.2 2.1E+02 0.0045 23.5 8.6 23 143-166 9-31 (210)
252 PRK07764 DNA polymerase III su 40.2 1.9E+02 0.0042 30.0 9.4 98 142-249 100-199 (824)
253 PF01964 ThiC: ThiC family; I 40.1 94 0.002 29.3 6.4 154 73-254 74-263 (420)
254 TIGR01284 alt_nitrog_alph nitr 40.0 3.4E+02 0.0074 25.9 11.1 105 110-220 109-229 (457)
255 TIGR01282 nifD nitrogenase mol 40.0 2E+02 0.0043 27.7 9.0 102 110-220 116-237 (466)
256 TIGR00035 asp_race aspartate r 39.9 2E+02 0.0044 24.4 8.3 63 141-204 13-88 (229)
257 TIGR00126 deoC deoxyribose-pho 39.9 1.7E+02 0.0036 25.0 7.6 75 73-163 130-206 (211)
258 cd07937 DRE_TIM_PC_TC_5S Pyruv 39.8 2.7E+02 0.0057 24.6 16.3 131 72-216 18-162 (275)
259 cd01994 Alpha_ANH_like_IV This 39.8 2.2E+02 0.0048 23.7 11.0 99 149-258 48-149 (194)
260 PF13289 SIR2_2: SIR2-like dom 39.8 1E+02 0.0022 23.5 5.9 69 176-250 73-143 (143)
261 cd03313 enolase Enolase: Enola 39.2 2.4E+02 0.0051 26.6 9.2 97 142-251 261-361 (408)
262 PRK05628 coproporphyrinogen II 39.2 2.1E+02 0.0046 26.3 8.9 89 73-201 142-247 (375)
263 TIGR02931 anfK_nitrog Fe-only 39.1 3.5E+02 0.0075 25.9 10.5 114 95-221 71-200 (461)
264 PRK01222 N-(5'-phosphoribosyl) 38.8 2E+02 0.0042 24.4 7.9 97 81-200 16-112 (210)
265 TIGR03821 AblA_like_1 lysine-2 38.8 3E+02 0.0065 24.9 13.7 136 73-220 126-268 (321)
266 PRK05283 deoxyribose-phosphate 38.3 1.7E+02 0.0036 25.9 7.5 79 76-164 148-227 (257)
267 CHL00162 thiG thiamin biosynth 38.1 2.4E+02 0.0052 25.0 8.3 53 141-193 80-140 (267)
268 COG2256 MGS1 ATPase related to 38.0 2.5E+02 0.0054 26.7 8.8 104 79-202 37-143 (436)
269 PRK15108 biotin synthase; Prov 38.0 2.8E+02 0.0061 25.4 9.4 65 142-210 76-144 (345)
270 cd00423 Pterin_binding Pterin 37.4 2.8E+02 0.006 24.2 11.5 104 142-257 21-131 (258)
271 PRK13803 bifunctional phosphor 37.4 1.8E+02 0.0038 29.1 8.4 66 156-227 20-88 (610)
272 cd03326 MR_like_1 Mandelate ra 37.4 3.5E+02 0.0075 25.2 12.4 151 74-248 161-313 (385)
273 PRK07994 DNA polymerase III su 37.2 4.5E+02 0.0099 26.5 13.2 97 142-248 99-197 (647)
274 cd02803 OYE_like_FMN_family Ol 37.1 3.1E+02 0.0066 24.5 11.8 80 127-210 207-301 (327)
275 PRK14465 ribosomal RNA large s 37.1 3.4E+02 0.0073 25.0 10.9 92 166-259 216-331 (342)
276 PRK12267 methionyl-tRNA synthe 37.1 2.1E+02 0.0046 28.6 9.1 49 145-195 73-121 (648)
277 PRK09061 D-glutamate deacylase 37.0 4E+02 0.0087 25.8 10.8 13 238-250 267-279 (509)
278 PRK04820 rnpA ribonuclease P; 37.0 1.8E+02 0.0038 23.4 6.9 62 126-189 49-114 (145)
279 TIGR02026 BchE magnesium-proto 36.7 2.3E+02 0.0049 27.4 8.9 109 142-255 222-345 (497)
280 TIGR02109 PQQ_syn_pqqE coenzym 36.7 3.3E+02 0.0071 24.7 14.1 128 71-218 36-175 (358)
281 PF08734 GYD: GYD domain; Int 36.5 1.7E+02 0.0036 21.3 6.7 65 145-209 19-90 (91)
282 COG2896 MoaA Molybdenum cofact 36.5 3.4E+02 0.0073 24.9 11.4 124 71-218 42-182 (322)
283 TIGR00538 hemN oxygen-independ 36.2 1.7E+02 0.0037 27.9 7.9 89 73-201 185-289 (455)
284 COG1121 ZnuC ABC-type Mn/Zn tr 36.0 77 0.0017 28.0 5.0 46 161-208 156-205 (254)
285 PRK01732 rnpA ribonuclease P; 35.9 1.9E+02 0.0042 21.9 6.8 60 126-188 46-110 (114)
286 PRK08208 coproporphyrinogen II 35.9 3.3E+02 0.0072 25.7 9.8 113 79-202 142-275 (430)
287 TIGR00188 rnpA ribonuclease P 35.9 1.8E+02 0.0038 21.7 6.4 58 126-186 42-103 (105)
288 cd00452 KDPG_aldolase KDPG and 35.9 2.5E+02 0.0054 23.1 14.0 110 73-224 14-123 (190)
289 TIGR01430 aden_deam adenosine 35.7 3.2E+02 0.007 24.4 12.7 113 141-254 64-193 (324)
290 PRK06294 coproporphyrinogen II 35.6 2.6E+02 0.0056 25.8 8.8 61 140-202 165-243 (370)
291 PF12816 Vps8: Golgi CORVET co 35.5 38 0.00082 28.5 3.0 64 179-247 4-67 (196)
292 TIGR02666 moaA molybdenum cofa 35.5 2.1E+02 0.0045 25.8 8.0 75 182-258 104-196 (334)
293 PRK08247 cystathionine gamma-s 35.3 2.5E+02 0.0054 25.7 8.7 23 202-224 152-174 (366)
294 PRK10060 RNase II stability mo 35.2 3.5E+02 0.0076 27.1 10.3 115 128-253 492-618 (663)
295 cd07948 DRE_TIM_HCS Saccharomy 35.1 3.1E+02 0.0068 24.1 10.5 103 141-253 18-132 (262)
296 TIGR01290 nifB nitrogenase cof 35.1 4E+02 0.0086 25.4 10.1 68 141-210 59-131 (442)
297 PRK10605 N-ethylmaleimide redu 35.1 3.7E+02 0.008 24.8 11.5 80 130-211 227-312 (362)
298 PRK11059 regulatory protein Cs 35.0 2E+02 0.0044 28.5 8.5 104 142-254 495-611 (640)
299 KOG0996 Structural maintenance 35.0 26 0.00056 37.2 2.1 76 176-256 599-675 (1293)
300 PRK12331 oxaloacetate decarbox 35.0 2E+02 0.0043 27.6 8.1 101 148-251 28-141 (448)
301 PRK00396 rnpA ribonuclease P; 34.9 1.8E+02 0.0039 22.8 6.6 60 126-188 47-111 (130)
302 TIGR00674 dapA dihydrodipicoli 34.9 3.2E+02 0.0069 24.1 12.9 133 70-210 14-172 (285)
303 PRK14456 ribosomal RNA large s 34.7 3E+02 0.0066 25.6 9.0 81 175-257 260-353 (368)
304 COG3033 TnaA Tryptophanase [Am 34.6 97 0.0021 29.0 5.5 52 199-250 168-223 (471)
305 PRK00133 metG methionyl-tRNA s 34.6 2.2E+02 0.0047 28.8 8.6 99 91-193 5-117 (673)
306 cd06300 PBP1_ABC_sugar_binding 34.5 2.8E+02 0.0061 23.4 10.0 13 146-158 16-28 (272)
307 TIGR00853 pts-lac PTS system, 34.5 64 0.0014 23.7 3.7 27 237-263 66-92 (95)
308 TIGR00539 hemN_rel putative ox 34.5 3.6E+02 0.0079 24.6 13.6 65 152-216 103-180 (360)
309 PRK10826 2-deoxyglucose-6-phos 34.4 1.3E+02 0.0028 25.1 6.2 36 175-211 93-128 (222)
310 TIGR03679 arCOG00187 arCOG0018 34.2 2.9E+02 0.0063 23.4 11.0 101 149-258 46-147 (218)
311 cd07937 DRE_TIM_PC_TC_5S Pyruv 34.2 1.9E+02 0.004 25.6 7.3 17 201-217 116-132 (275)
312 PF14871 GHL6: Hypothetical gl 34.1 34 0.00074 26.9 2.3 20 237-256 48-67 (132)
313 PRK07379 coproporphyrinogen II 34.0 2.6E+02 0.0056 26.2 8.6 88 73-200 149-253 (400)
314 PRK14477 bifunctional nitrogen 33.9 3.4E+02 0.0074 28.6 10.2 110 94-219 90-213 (917)
315 COG0076 GadB Glutamate decarbo 33.9 1.7E+02 0.0037 28.1 7.4 85 144-228 163-251 (460)
316 cd05007 SIS_Etherase N-acetylm 33.8 3.2E+02 0.007 23.8 11.0 122 75-208 36-162 (257)
317 COG2055 Malate/L-lactate dehyd 33.6 3.4E+02 0.0074 25.1 8.9 94 141-252 5-114 (349)
318 COG2179 Predicted hydrolase of 33.6 1.6E+02 0.0035 24.4 6.1 57 154-211 22-82 (175)
319 cd03466 Nitrogenase_NifN_2 Nit 33.6 3.8E+02 0.0082 25.3 9.7 111 96-219 64-184 (429)
320 TIGR01329 cysta_beta_ly_E cyst 33.3 3.3E+02 0.0073 25.1 9.2 21 204-224 149-169 (378)
321 PRK00454 engB GTP-binding prot 33.2 2.5E+02 0.0055 22.4 9.9 59 128-190 138-196 (196)
322 PRK11194 ribosomal RNA large s 33.1 4.1E+02 0.0089 24.8 10.1 89 167-257 221-337 (372)
323 PF15221 LEP503: Lens epitheli 33.0 28 0.0006 23.0 1.3 22 36-57 15-36 (61)
324 KOG4175 Tryptophan synthase al 32.9 3.2E+02 0.0069 23.5 9.3 103 149-251 3-153 (268)
325 PRK02901 O-succinylbenzoate sy 32.9 2.6E+02 0.0057 25.5 8.2 71 180-258 173-244 (327)
326 COG3589 Uncharacterized conser 32.6 3.7E+02 0.0081 24.8 8.9 155 73-258 14-182 (360)
327 cd06593 GH31_xylosidase_YicI Y 32.6 1.4E+02 0.003 26.7 6.4 54 200-253 21-86 (308)
328 PRK12581 oxaloacetate decarbox 32.4 4.7E+02 0.01 25.3 16.7 159 71-247 101-263 (468)
329 PTZ00124 adenosine deaminase; 32.3 4.1E+02 0.009 24.6 10.3 107 142-254 99-227 (362)
330 PRK01492 rnpA ribonuclease P; 32.2 2.3E+02 0.005 21.7 6.6 60 126-187 47-114 (118)
331 cd00954 NAL N-Acetylneuraminic 32.1 3.6E+02 0.0078 23.8 13.9 134 70-210 16-176 (288)
332 PRK08599 coproporphyrinogen II 32.0 4.1E+02 0.0088 24.4 12.9 40 176-215 135-179 (377)
333 COG0159 TrpA Tryptophan syntha 32.0 3.7E+02 0.008 23.9 13.7 146 73-250 29-174 (265)
334 PRK08419 lipid A biosynthesis 32.0 3.6E+02 0.0078 23.8 9.6 65 79-163 103-167 (298)
335 PF14606 Lipase_GDSL_3: GDSL-l 32.0 2.2E+02 0.0048 23.7 6.9 69 85-169 30-100 (178)
336 PF01487 DHquinase_I: Type I 3 31.9 3.1E+02 0.0068 23.1 10.2 119 72-209 72-192 (224)
337 cd04747 OYE_like_5_FMN Old yel 31.8 4.2E+02 0.0091 24.5 12.2 82 127-211 210-319 (361)
338 PRK08255 salicylyl-CoA 5-hydro 31.7 5.8E+02 0.013 26.1 12.9 109 127-248 617-737 (765)
339 COG0052 RpsB Ribosomal protein 31.6 3.6E+02 0.0078 23.8 8.3 102 127-253 66-186 (252)
340 PLN02746 hydroxymethylglutaryl 31.6 4.2E+02 0.0091 24.5 14.4 140 71-213 64-236 (347)
341 PF13580 SIS_2: SIS domain; PD 31.5 1.1E+02 0.0024 23.8 4.9 116 73-198 20-137 (138)
342 COG2185 Sbm Methylmalonyl-CoA 31.5 77 0.0017 25.4 3.9 58 194-261 19-78 (143)
343 TIGR03705 poly_P_kin polyphosp 31.4 2.5E+02 0.0053 28.5 8.3 82 167-250 333-417 (672)
344 PRK09061 D-glutamate deacylase 31.4 4.9E+02 0.011 25.2 13.2 116 74-200 168-285 (509)
345 PF13380 CoA_binding_2: CoA bi 31.4 1.3E+02 0.0029 22.7 5.2 45 203-254 66-110 (116)
346 TIGR02637 RhaS rhamnose ABC tr 31.1 3.5E+02 0.0076 23.4 10.5 74 144-221 13-86 (302)
347 cd00952 CHBPH_aldolase Trans-o 31.1 3.9E+02 0.0085 24.0 14.1 135 70-210 24-182 (309)
348 PRK05826 pyruvate kinase; Prov 30.8 5E+02 0.011 25.1 10.8 93 77-192 175-274 (465)
349 COG3693 XynA Beta-1,4-xylanase 30.7 4.3E+02 0.0093 24.3 9.6 156 70-230 77-264 (345)
350 cd00954 NAL N-Acetylneuraminic 30.7 3.8E+02 0.0082 23.7 12.2 109 140-254 16-136 (288)
351 PRK08195 4-hyroxy-2-oxovalerat 30.6 4.2E+02 0.0092 24.2 17.9 24 72-95 22-45 (337)
352 TIGR01917 gly_red_sel_B glycin 30.5 2.5E+02 0.0055 26.7 7.7 74 180-255 289-373 (431)
353 CHL00200 trpA tryptophan synth 30.5 3.8E+02 0.0083 23.6 10.0 97 148-250 28-148 (263)
354 cd01320 ADA Adenosine deaminas 30.4 3.9E+02 0.0085 23.8 12.3 112 142-254 66-194 (325)
355 TIGR02814 pfaD_fam PfaD family 30.4 2.5E+02 0.0054 27.0 7.8 71 181-253 34-107 (444)
356 PF01120 Alpha_L_fucos: Alpha- 30.3 1.2E+02 0.0025 27.9 5.5 37 220-256 122-161 (346)
357 PRK13347 coproporphyrinogen II 30.3 4.8E+02 0.011 24.8 11.9 18 142-159 117-134 (453)
358 PF03599 CdhD: CO dehydrogenas 30.1 2.2E+02 0.0047 26.8 7.2 86 162-256 69-154 (386)
359 KOG3022 Predicted ATPase, nucl 30.0 2.7E+02 0.0059 25.1 7.4 106 147-256 141-258 (300)
360 PRK14462 ribosomal RNA large s 30.0 4.5E+02 0.0098 24.3 17.0 90 167-258 225-339 (356)
361 PRK04147 N-acetylneuraminate l 29.9 3.9E+02 0.0085 23.6 13.0 133 70-210 19-178 (293)
362 cd03314 MAL Methylaspartate am 29.8 1.6E+02 0.0034 27.5 6.3 85 165-254 229-320 (369)
363 TIGR01861 ANFD nitrogenase iro 29.7 5.4E+02 0.012 25.2 10.2 110 95-221 106-233 (513)
364 PRK14468 ribosomal RNA large s 29.7 4.4E+02 0.0096 24.2 10.0 101 155-257 193-321 (343)
365 KOG1579 Homocysteine S-methylt 29.7 4.4E+02 0.0095 24.1 12.3 183 64-252 43-255 (317)
366 PRK00507 deoxyribose-phosphate 29.6 3E+02 0.0066 23.5 7.7 79 70-162 131-209 (221)
367 TIGR00510 lipA lipoate synthas 29.6 4.2E+02 0.0092 23.9 15.1 168 73-257 92-285 (302)
368 COG3454 Metal-dependent hydrol 29.3 1.4E+02 0.003 27.6 5.5 17 236-252 213-229 (377)
369 cd01977 Nitrogenase_VFe_alpha 29.2 4.8E+02 0.01 24.4 12.3 112 94-220 65-192 (415)
370 cd00316 Oxidoreductase_nitroge 29.2 4.5E+02 0.0097 24.0 9.8 137 110-256 66-234 (399)
371 PRK10200 putative racemase; Pr 29.1 3.7E+02 0.008 23.0 8.7 64 141-205 13-89 (230)
372 TIGR00433 bioB biotin syntheta 29.0 3.9E+02 0.0085 23.3 12.7 127 72-217 62-201 (296)
373 COG0820 Predicted Fe-S-cluster 29.0 4.7E+02 0.01 24.2 9.5 91 166-259 216-332 (349)
374 PRK12558 glutamyl-tRNA synthet 29.0 2.3E+02 0.005 27.2 7.3 65 140-211 46-110 (445)
375 cd06543 GH18_PF-ChiA-like PF-C 28.9 4.2E+02 0.0091 23.7 8.7 82 141-224 86-176 (294)
376 PRK13361 molybdenum cofactor b 28.9 4.3E+02 0.0094 23.8 11.5 76 181-258 105-197 (329)
377 PLN02376 1-aminocyclopropane-1 28.8 5.4E+02 0.012 24.8 14.5 16 237-252 223-238 (496)
378 PRK05406 LamB/YcsF family prot 28.8 2.8E+02 0.006 24.4 7.2 74 52-158 13-95 (246)
379 PRK07811 cystathionine gamma-s 28.8 4.7E+02 0.01 24.2 9.8 14 204-217 164-177 (388)
380 cd08568 GDPD_TmGDE_like Glycer 28.8 1.8E+02 0.0039 24.6 6.2 20 75-94 14-33 (226)
381 PRK15063 isocitrate lyase; Pro 28.8 3.1E+02 0.0068 26.1 8.0 74 146-222 263-345 (428)
382 PF01118 Semialdhyde_dh: Semia 28.7 69 0.0015 24.3 3.2 28 73-100 75-102 (121)
383 cd06591 GH31_xylosidase_XylS X 28.6 1.5E+02 0.0032 26.8 5.8 53 201-253 22-86 (319)
384 TIGR03234 OH-pyruv-isom hydrox 28.6 3.7E+02 0.008 22.9 9.9 96 147-250 16-140 (254)
385 PRK07114 keto-hydroxyglutarate 28.6 3.6E+02 0.0078 23.2 7.9 41 72-120 24-64 (222)
386 PRK05904 coproporphyrinogen II 28.6 4.7E+02 0.01 24.0 12.8 41 176-216 138-183 (353)
387 PRK03170 dihydrodipicolinate s 28.4 4.1E+02 0.009 23.4 13.3 133 70-210 17-175 (292)
388 cd07945 DRE_TIM_CMS Leptospira 28.3 4.2E+02 0.0092 23.5 12.4 116 142-262 108-232 (280)
389 cd06311 PBP1_ABC_sugar_binding 28.3 3.7E+02 0.0079 22.7 10.0 74 144-220 14-89 (274)
390 PRK12569 hypothetical protein; 28.2 3E+02 0.0066 24.1 7.3 76 52-158 14-98 (245)
391 PRK04820 rnpA ribonuclease P; 28.2 2.5E+02 0.0054 22.5 6.4 32 127-160 86-117 (145)
392 PRK09776 putative diguanylate 28.2 2E+02 0.0044 30.2 7.6 104 141-253 936-1051(1092)
393 COG2109 BtuR ATP:corrinoid ade 28.1 3.7E+02 0.0081 22.8 7.8 97 75-184 43-150 (198)
394 PF10171 DUF2366: Uncharacteri 28.1 1.2E+02 0.0027 25.1 4.7 50 148-200 66-116 (173)
395 PRK09248 putative hydrolase; V 28.1 3.8E+02 0.0083 22.9 15.1 159 76-251 20-190 (246)
396 PF01261 AP_endonuc_2: Xylose 28.0 1.9E+02 0.0041 23.3 6.1 14 237-250 116-129 (213)
397 PF07302 AroM: AroM protein; 27.9 4E+02 0.0086 23.0 13.9 163 74-256 12-188 (221)
398 PRK09856 fructoselysine 3-epim 27.9 3.9E+02 0.0085 23.0 10.1 98 153-250 20-146 (275)
399 PF00701 DHDPS: Dihydrodipicol 27.9 4.2E+02 0.0091 23.3 11.8 133 70-210 17-175 (289)
400 PRK15005 universal stress prot 27.8 2.5E+02 0.0055 21.2 6.4 34 230-265 92-125 (144)
401 PRK13561 putative diguanylate 27.8 1.3E+02 0.0028 29.8 5.8 74 176-254 533-612 (651)
402 cd08557 PI-PLCc_bacteria_like 27.7 2.1E+02 0.0045 24.7 6.5 19 80-98 42-60 (271)
403 COG1038 PycA Pyruvate carboxyl 27.7 6.7E+02 0.015 26.4 10.4 149 75-258 17-170 (1149)
404 PRK09389 (R)-citramalate synth 27.5 5.2E+02 0.011 25.0 9.6 26 72-97 21-46 (488)
405 cd06454 KBL_like KBL_like; thi 27.4 4.3E+02 0.0094 23.3 14.4 61 199-259 114-175 (349)
406 PRK05799 coproporphyrinogen II 27.3 3.9E+02 0.0084 24.5 8.5 88 73-200 133-237 (374)
407 PF08013 Tagatose_6_P_K: Tagat 27.1 70 0.0015 30.3 3.4 51 45-97 79-131 (424)
408 PF00697 PRAI: N-(5'phosphorib 27.0 83 0.0018 26.3 3.7 67 154-228 14-81 (197)
409 COG0626 MetC Cystathionine bet 27.0 3.8E+02 0.0083 25.3 8.3 45 217-261 150-194 (396)
410 COG1021 EntE Peptide arylation 27.0 5.3E+02 0.012 24.8 9.0 95 110-212 27-124 (542)
411 COG0135 TrpF Phosphoribosylant 27.0 88 0.0019 26.7 3.8 33 162-200 75-110 (208)
412 PRK09282 pyruvate carboxylase 26.9 2.6E+02 0.0055 27.9 7.5 102 148-252 28-142 (592)
413 PRK04165 acetyl-CoA decarbonyl 26.9 5.8E+02 0.012 24.6 11.7 103 141-254 101-209 (450)
414 PRK14470 ribosomal RNA large s 26.9 5E+02 0.011 23.8 9.5 83 175-259 229-324 (336)
415 COG1618 Predicted nucleotide k 26.7 3.7E+02 0.0081 22.3 8.2 87 109-210 86-173 (179)
416 PRK10415 tRNA-dihydrouridine s 26.6 4.8E+02 0.01 23.6 12.4 130 74-211 76-215 (321)
417 TIGR03822 AblA_like_2 lysine-2 26.6 4.8E+02 0.01 23.5 11.6 21 238-258 219-239 (321)
418 cd06598 GH31_transferase_CtsZ 26.4 1.7E+02 0.0036 26.4 5.8 53 201-253 22-90 (317)
419 PF00101 RuBisCO_small: Ribulo 26.4 2.8E+02 0.006 20.7 7.9 74 71-170 10-84 (99)
420 TIGR02080 O_succ_thio_ly O-suc 26.3 5.2E+02 0.011 23.9 14.0 14 205-218 155-168 (382)
421 PRK02714 O-succinylbenzoate sy 26.3 2.9E+02 0.0062 24.9 7.3 86 163-259 192-278 (320)
422 PRK08045 cystathionine gamma-s 26.3 5.2E+02 0.011 23.9 9.2 20 205-224 156-175 (386)
423 PRK08905 lipid A biosynthesis 26.3 4E+02 0.0087 23.5 8.2 64 78-162 90-153 (289)
424 PRK11858 aksA trans-homoaconit 26.2 5.3E+02 0.012 23.9 14.4 25 72-96 23-47 (378)
425 cd00338 Ser_Recombinase Serine 26.1 1.4E+02 0.003 22.6 4.6 43 148-190 51-95 (137)
426 PRK08599 coproporphyrinogen II 26.1 4.1E+02 0.0089 24.4 8.5 61 140-202 162-240 (377)
427 PRK11706 TDP-4-oxo-6-deoxy-D-g 26.1 5.1E+02 0.011 23.6 12.9 137 78-255 14-155 (375)
428 PRK08207 coproporphyrinogen II 26.0 6.1E+02 0.013 24.6 13.4 120 138-261 228-367 (488)
429 PRK08084 DNA replication initi 26.0 4.1E+02 0.009 22.6 8.1 43 163-205 98-145 (235)
430 smart00729 Elp3 Elongator prot 26.0 3.4E+02 0.0073 21.6 13.8 42 176-217 135-181 (216)
431 PLN02607 1-aminocyclopropane-1 25.9 5.7E+02 0.012 24.2 14.1 15 237-251 224-238 (447)
432 cd06595 GH31_xylosidase_XylS-l 25.8 2E+02 0.0044 25.6 6.1 54 200-253 22-94 (292)
433 cd00423 Pterin_binding Pterin 25.7 4.5E+02 0.0096 22.8 12.0 107 79-201 87-210 (258)
434 cd06316 PBP1_ABC_sugar_binding 25.7 4.3E+02 0.0094 22.7 9.3 75 144-223 14-88 (294)
435 PRK09082 methionine aminotrans 25.6 5.2E+02 0.011 23.6 14.6 150 75-254 46-204 (386)
436 PRK14460 ribosomal RNA large s 25.6 5.4E+02 0.012 23.7 17.1 168 72-257 130-332 (354)
437 PRK07094 biotin synthase; Prov 25.6 4.8E+02 0.011 23.2 13.5 127 72-217 70-209 (323)
438 PF00809 Pterin_bind: Pterin b 25.5 4.1E+02 0.0088 22.3 8.2 106 80-199 84-205 (210)
439 PRK08508 biotin synthase; Prov 25.5 4.7E+02 0.01 23.0 9.5 116 142-258 40-162 (279)
440 COG3113 Predicted NTP binding 25.4 1.4E+02 0.003 22.4 4.1 67 142-211 20-89 (99)
441 smart00481 POLIIIAc DNA polyme 25.4 88 0.0019 20.8 2.9 44 204-251 16-59 (67)
442 PLN02520 bifunctional 3-dehydr 25.3 6.5E+02 0.014 24.6 15.0 164 75-261 35-207 (529)
443 PF14606 Lipase_GDSL_3: GDSL-l 25.3 2E+02 0.0044 23.9 5.6 84 83-172 56-146 (178)
444 COG0145 HyuA N-methylhydantoin 25.3 5.6E+02 0.012 26.0 9.6 91 70-172 134-242 (674)
445 cd06602 GH31_MGAM_SI_GAA This 25.3 1.7E+02 0.0037 26.7 5.7 53 201-253 22-86 (339)
446 cd06320 PBP1_allose_binding Pe 25.2 4.2E+02 0.009 22.3 10.9 15 237-251 143-158 (275)
447 COG3215 PilZ Tfp pilus assembl 25.2 1.8E+02 0.0039 22.0 4.6 70 75-156 20-105 (117)
448 PF00809 Pterin_bind: Pterin b 25.2 4.1E+02 0.0089 22.3 8.1 89 157-255 30-125 (210)
449 cd08561 GDPD_cytoplasmic_ScUgp 25.1 2.7E+02 0.0058 23.8 6.7 20 75-94 13-32 (249)
450 PRK11359 cyclic-di-GMP phospho 25.1 4.4E+02 0.0094 26.5 9.1 70 177-254 678-756 (799)
451 TIGR00036 dapB dihydrodipicoli 25.1 4E+02 0.0086 23.3 7.8 53 162-218 68-120 (266)
452 cd06597 GH31_transferase_CtsY 24.9 2.1E+02 0.0046 26.1 6.2 52 201-252 22-104 (340)
453 PF10923 DUF2791: P-loop Domai 24.9 2.2E+02 0.0047 27.1 6.3 68 45-135 16-83 (416)
454 COG4943 Predicted signal trans 24.8 3.8E+02 0.0083 26.1 7.8 125 111-253 342-478 (524)
455 cd00952 CHBPH_aldolase Trans-o 24.8 3.8E+02 0.0082 24.1 7.7 105 141-253 25-142 (309)
456 PF05913 DUF871: Bacterial pro 24.7 1.1E+02 0.0024 28.4 4.2 57 195-251 2-65 (357)
457 PRK12570 N-acetylmuramic acid- 24.6 5.1E+02 0.011 23.2 11.4 120 75-208 45-171 (296)
458 PRK04132 replication factor C 24.6 3.1E+02 0.0067 28.7 7.8 97 142-248 608-708 (846)
459 PRK15456 universal stress prot 24.6 88 0.0019 24.0 3.2 41 224-266 84-124 (142)
460 PRK06015 keto-hydroxyglutarate 24.5 4.3E+02 0.0094 22.3 7.7 41 72-120 13-53 (201)
461 cd03770 SR_TndX_transposase Se 24.5 2E+02 0.0043 22.4 5.3 41 149-189 55-97 (140)
462 TIGR03470 HpnH hopanoid biosyn 24.5 5.2E+02 0.011 23.2 14.1 48 176-223 148-198 (318)
463 TIGR02884 spore_pdaA delta-lac 24.4 4.2E+02 0.0091 22.4 7.7 41 149-191 175-215 (224)
464 PLN02224 methionine-tRNA ligas 24.4 4.5E+02 0.0097 26.4 8.7 104 86-193 67-184 (616)
465 smart00052 EAL Putative diguan 24.4 4E+02 0.0088 21.9 8.1 101 145-254 99-211 (241)
466 cd06604 GH31_glucosidase_II_Ma 24.3 1.8E+02 0.0039 26.5 5.6 52 201-252 22-83 (339)
467 cd06594 GH31_glucosidase_YihQ 24.3 1.8E+02 0.004 26.2 5.6 53 201-253 21-91 (317)
468 PF00331 Glyco_hydro_10: Glyco 24.2 2.3E+02 0.005 25.6 6.3 109 144-256 155-287 (320)
469 PF06506 PrpR_N: Propionate ca 24.2 1.3E+02 0.0028 24.6 4.2 96 147-253 19-132 (176)
470 PRK00588 rnpA ribonuclease P; 24.1 3E+02 0.0065 21.0 6.0 61 126-189 44-109 (118)
471 TIGR00423 radical SAM domain p 24.1 5.2E+02 0.011 23.0 9.2 67 180-247 107-188 (309)
472 cd08620 PI-PLCXDc_like_1 Catal 24.0 4.2E+02 0.0091 23.7 7.7 104 81-196 36-162 (281)
473 PRK06553 lipid A biosynthesis 24.0 5.2E+02 0.011 23.0 10.3 63 79-161 123-185 (308)
474 smart00857 Resolvase Resolvase 24.0 2.3E+02 0.005 21.7 5.6 19 75-93 19-37 (148)
475 TIGR01182 eda Entner-Doudoroff 24.0 4.5E+02 0.0097 22.3 7.7 42 72-121 17-58 (204)
476 PRK12268 methionyl-tRNA synthe 23.9 2.8E+02 0.0061 27.1 7.2 99 91-193 6-119 (556)
477 cd03527 RuBisCO_small Ribulose 23.8 3.2E+02 0.0068 20.5 9.5 73 71-169 11-84 (99)
478 PRK06256 biotin synthase; Vali 23.7 5.4E+02 0.012 23.1 12.8 127 71-216 90-229 (336)
479 cd01972 Nitrogenase_VnfE_like 23.5 3.8E+02 0.0083 25.2 7.8 107 110-222 74-198 (426)
480 PF05378 Hydant_A_N: Hydantoin 23.5 2.7E+02 0.0059 22.8 6.1 44 172-216 129-176 (176)
481 cd07948 DRE_TIM_HCS Saccharomy 23.5 5.1E+02 0.011 22.7 14.4 25 72-96 19-43 (262)
482 PRK15108 biotin synthase; Prov 23.5 5.7E+02 0.012 23.4 12.5 126 72-215 76-212 (345)
483 PRK09413 IS2 repressor TnpA; R 23.4 1.3E+02 0.0029 22.9 3.9 42 72-121 13-54 (121)
484 cd00408 DHDPS-like Dihydrodipi 23.4 5E+02 0.011 22.6 8.7 108 140-254 13-131 (281)
485 PRK09875 putative hydrolase; P 23.4 5.4E+02 0.012 23.0 13.1 40 73-119 32-72 (292)
486 cd08605 GDPD_GDE5_like_1_plant 23.4 1.7E+02 0.0037 25.7 5.2 18 237-254 241-258 (282)
487 PF08671 SinI: Anti-repressor 23.4 96 0.0021 17.9 2.3 16 75-90 3-18 (30)
488 PF03796 DnaB_C: DnaB-like hel 23.4 3.1E+02 0.0067 23.6 6.7 22 237-258 161-182 (259)
489 PRK05443 polyphosphate kinase; 23.3 3.3E+02 0.0072 27.7 7.6 82 167-250 342-426 (691)
490 cd00019 AP2Ec AP endonuclease 23.2 4.9E+02 0.011 22.5 8.9 17 204-220 86-102 (279)
491 PF07894 DUF1669: Protein of u 23.1 5.6E+02 0.012 23.0 8.5 65 176-249 135-200 (284)
492 PRK09545 znuA high-affinity zi 23.0 5.6E+02 0.012 23.0 9.6 52 201-259 237-288 (311)
493 TIGR03128 RuMP_HxlA 3-hexulose 22.9 2.9E+02 0.0063 22.8 6.3 93 148-251 11-107 (206)
494 cd08573 GDPD_GDE1 Glycerophosp 22.9 2.2E+02 0.0048 24.8 5.7 18 237-254 219-236 (258)
495 PRK07360 FO synthase subunit 2 22.9 6.1E+02 0.013 23.4 10.1 139 72-255 91-252 (371)
496 PRK14340 (dimethylallyl)adenos 22.9 6.6E+02 0.014 23.9 11.9 133 70-216 176-328 (445)
497 PRK02842 light-independent pro 22.8 6.4E+02 0.014 23.7 9.8 101 110-219 81-194 (427)
498 PRK08943 lipid A biosynthesis 22.8 5.4E+02 0.012 23.0 8.4 33 79-120 121-153 (314)
499 PLN02231 alanine transaminase 22.8 7.2E+02 0.016 24.3 15.1 83 177-259 256-353 (534)
500 PF13419 HAD_2: Haloacid dehal 22.8 3.2E+02 0.0069 20.9 6.3 35 176-211 79-113 (176)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.1e-51 Score=371.25 Aligned_cols=210 Identities=39% Similarity=0.595 Sum_probs=191.9
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHH
Q 024322 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (269)
Q Consensus 36 m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~ 115 (269)
|++|+||+||++||+||||||.+++. ..+.+.+++.++|++|+|+||||||||+.||.|.+ |+++|+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999874 23345568888999999999999999999999987 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCC--------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHHHHH
Q 024322 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (269)
Q Consensus 116 al~~~~~~~~R~~l~I~tK~~~~~--------~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~L 186 (269)
||++.+. |++++|+||++... .++++++++++++.||+||||||||+|++||||. .+.++++++|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9998863 69999999998642 3569999999999999999999999999999998 6788999999999
Q ss_pred HHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccccccccC
Q 024322 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLFFLT 266 (269)
Q Consensus 187 ~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~~~ 266 (269)
+++||||+||+||++.+++.++++.+ .+++++|.+||+++++.+. +++++|+++||++++|+||++|+|++||..
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998874 4799999999999986665 499999999999999999999999999886
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7e-51 Score=363.42 Aligned_cols=221 Identities=38% Similarity=0.548 Sum_probs=199.2
Q ss_pred cccccccceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCch
Q 024322 30 ATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINS 109 (269)
Q Consensus 30 ~~~~~~m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~s 109 (269)
.+....|++++||++|++||++|||+|.+.. | .+. .++++++++|++|+|+|+||||||+.||++.+
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~---~---~~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------ 72 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWTT---F---GGQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------ 72 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeeec---c---ccC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------
Confidence 3444578999999999999999999973221 1 234 68899999999999999999999999999887
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCC-----CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALP-----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~-----~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L 183 (269)
|.++|++|++++.. |++++|+||++... ...+...+...++.|+++|++||||||++||+|+ .+.++++++|
T Consensus 73 E~llg~~i~~~~~~--R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL 150 (336)
T KOG1575|consen 73 EELLGEFIKSRGWR--RDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRAL 150 (336)
T ss_pred HHHHHHHHHhcCCc--CCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHH
Confidence 99999999998743 89999999998633 5667888999999999999999999999999998 7899999999
Q ss_pred HHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcccccc
Q 024322 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLF 263 (269)
Q Consensus 184 ~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~ 263 (269)
.+|+++|||++||+|+++.++|++++..++ ++|.++|++||++.+++++.+++++|++.||++++||||++|+||++
T Consensus 151 ~~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk 227 (336)
T KOG1575|consen 151 TDLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGK 227 (336)
T ss_pred HHHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccC
Confidence 999999999999999999999999999864 67999999999999998887899999999999999999999999999
Q ss_pred ccCCC
Q 024322 264 FLTVS 268 (269)
Q Consensus 264 ~~~~~ 268 (269)
|+..+
T Consensus 228 ~~~~e 232 (336)
T KOG1575|consen 228 YKLGE 232 (336)
T ss_pred ccccc
Confidence 98653
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.2e-48 Score=358.10 Aligned_cols=217 Identities=29% Similarity=0.399 Sum_probs=188.4
Q ss_pred ccccceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCC--CCCCCCCchH
Q 024322 33 KTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSE 110 (269)
Q Consensus 33 ~~~m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~--g~~~~~~~se 110 (269)
.+.|++++||+||++||+||||||+..+. ..+.+++.++|++|++.|||+||||+.||+ |.+ |
T Consensus 10 ~~~m~~r~lg~tg~~vs~lglG~~~~~g~---------~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------E 74 (346)
T PRK09912 10 YGQMQYRYCGKSGLRLPALSLGLWHNFGH---------VNALESQRAILRKAFDLGITHFDLANNYGPPPGSA------E 74 (346)
T ss_pred CCCcceeecCCCCcccccccccCccccCC---------CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------H
Confidence 45699999999999999999999963211 124577899999999999999999999995 777 9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEecCCCC------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHH
Q 024322 111 TLLGRFIKERKQRDPEVEVTVATKFAAL------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (269)
Q Consensus 111 ~~lG~al~~~~~~~~R~~l~I~tK~~~~------~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L 183 (269)
+.+|++|++.... +|++++|+||++.. +...+++.+++++++||++||+||||+|++|||+. .+.+++|++|
T Consensus 75 ~~lG~~l~~~~~~-~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al 153 (346)
T PRK09912 75 ENFGRLLREDFAA-YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASAL 153 (346)
T ss_pred HHHHHHHHhcccC-CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHH
Confidence 9999999864211 28999999998631 12367999999999999999999999999999986 5688999999
Q ss_pred HHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcccccc
Q 024322 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLF 263 (269)
Q Consensus 184 ~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~ 263 (269)
++|+++|||++||||||++++++++.+.+...+++++++|++||++++..+..+++++|+++||++++|+||++|+|+++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~ 233 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK 233 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCC
Confidence 99999999999999999999999888876666678999999999999876544699999999999999999999999998
Q ss_pred cc
Q 024322 264 FL 265 (269)
Q Consensus 264 ~~ 265 (269)
+.
T Consensus 234 ~~ 235 (346)
T PRK09912 234 YL 235 (346)
T ss_pred CC
Confidence 74
No 4
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3.3e-49 Score=346.45 Aligned_cols=192 Identities=36% Similarity=0.587 Sum_probs=174.3
Q ss_pred ccceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHH
Q 024322 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (269)
Q Consensus 35 ~m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG 114 (269)
.+.+.+|++ |.+||.||||||++++. +.+.+.+.+|++.|+|+||||..||| |+.+|
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG 58 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVG 58 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHH
Confidence 356788888 88899999999998764 44889999999999999999999998 99999
Q ss_pred HHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--C-hhHHHHHHHHHHHcCc
Q 024322 115 RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGL 191 (269)
Q Consensus 115 ~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~--~-~~~~~~~L~~L~~~G~ 191 (269)
+++++... +|+++||+||+|+ .+++++.+.+++++||++||+||+|||+||||.+. . ..++|++|++|+++|+
T Consensus 59 ~aI~~s~v--~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ 134 (280)
T COG0656 59 EAIKESGV--PREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGL 134 (280)
T ss_pred HHHHhcCC--CHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCC
Confidence 99999543 4899999999987 67789999999999999999999999999999652 2 5799999999999999
Q ss_pred ccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcc
Q 024322 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 192 ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~ 259 (269)
||+||||||+.++++++++. .++.|.+||++||++.++.+ ++++|+++||.++|||||++|.
T Consensus 135 ir~IGVSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~ 196 (280)
T COG0656 135 IRAIGVSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGG 196 (280)
T ss_pred ccEEEeeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCccccc
Confidence 99999999999999999886 34789999999999999876 9999999999999999999655
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=6.9e-48 Score=349.20 Aligned_cols=211 Identities=26% Similarity=0.368 Sum_probs=184.7
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHH
Q 024322 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al 117 (269)
||+||+||++||+||||||.+.+. ..+.+++.++|+.|++.|||+||||+.||.|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 588999999999999999974221 245688999999999999999999999998887 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHHHHHHHcCc
Q 024322 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (269)
Q Consensus 118 ~~~~~~~~R~~l~I~tK~~~~-----~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~L~~~G~ 191 (269)
+.... +|++++|+||++.. ...++++.+++++++||++||+||||+|++|||+. .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 86432 28999999998521 13468999999999999999999999999999986 467899999999999999
Q ss_pred ccEEEecCccHHHHHHHHHHHHhcC-CCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcccccccc
Q 024322 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLFFL 265 (269)
Q Consensus 192 ir~iGvS~~~~~~i~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~~ 265 (269)
||+||+|||+.++++++...+...+ ++|+++|++||+++++..+.+++++|+++||++++|+||++|+|+++|.
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~ 218 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYD 218 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCC
Confidence 9999999999999998877666655 5799999999999987544469999999999999999999999999874
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=5e-47 Score=347.46 Aligned_cols=210 Identities=28% Similarity=0.439 Sum_probs=183.8
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCC-------CCCCCCCc
Q 024322 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (269)
Q Consensus 36 m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~-------g~~~~~~~ 108 (269)
|+|++||+||++||+||||||.++.. .+++++.++|+.|++.|+|+||||+.||. |.+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998643 34688999999999999999999999983 555
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCC----------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-----
Q 024322 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----- 173 (269)
Q Consensus 109 se~~lG~al~~~~~~~~R~~l~I~tK~~~~~----------~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~----- 173 (269)
|+.+|++|+..+ +|++++|+||++... ..++++.+++++++||++||+||||+|++|||+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998643 289999999985311 1468999999999999999999999999999864
Q ss_pred -------------CChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCC-CEeEEcccCCccCCCcchhhHH
Q 024322 174 -------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 239 (269)
Q Consensus 174 -------------~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~l~ 239 (269)
.+.+++|++|++|+++|||++||+|||+.+++++++..+...++ .+.++|++||++++..+. +++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHH
Confidence 24579999999999999999999999999999988776655554 588999999999987644 599
Q ss_pred HHHHHcCCeEEEcccccCcccccccc
Q 024322 240 AACDELGITLIAYCPIAQGELLLFFL 265 (269)
Q Consensus 240 ~~~~~~gi~via~spl~~G~L~~~~~ 265 (269)
++|+++||++++|+||++|+|++++.
T Consensus 221 ~~~~~~gi~via~spL~~G~Ltg~~~ 246 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGTLTGKYL 246 (346)
T ss_pred HHHHHcCCeEEEeccccCeeccCCCC
Confidence 99999999999999999999999864
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.7e-46 Score=338.33 Aligned_cols=210 Identities=25% Similarity=0.329 Sum_probs=180.0
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHH
Q 024322 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al 117 (269)
||+||+||++||+||||||+++.. | +..+.+++.++|++|++.|||+||||+.||+|.+ |..+|++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~-----~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--F-----GPVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--C-----CCCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 689999999999999999998753 3 2356789999999999999999999999999887 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC----ChhHHHHHHHHHHHcCc
Q 024322 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGL 191 (269)
Q Consensus 118 ~~~~~~~~R~~l~I~tK~~~~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~----~~~~~~~~L~~L~~~G~ 191 (269)
++.+. +|++++|+||++... ..++++.+++++++||++||+||||+|++|+|+.. +.+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 87542 289999999997422 35789999999999999999999999999999742 34689999999999999
Q ss_pred ccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccccccc
Q 024322 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLFF 264 (269)
Q Consensus 192 ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~ 264 (269)
||+||+|||+.++++.+........+.+..+|+.||+.++..+ +++++|+++||++++|+||++|+|+++.
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCC
Confidence 9999999999999888776433222345567899998876433 6999999999999999999999999864
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=6.8e-45 Score=324.07 Aligned_cols=207 Identities=42% Similarity=0.669 Sum_probs=186.2
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHH
Q 024322 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al 117 (269)
+++||+||++||+||||||.++.. + .+.+++.++++.|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~-------~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG-------Y--VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC-------C--CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 578999999999999999988654 1 45689999999999999999999999999887 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--hhHHHHHHHHHHHcCcc
Q 024322 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAVEQGLV 192 (269)
Q Consensus 118 ~~~~~~~~R~~l~I~tK~~~~~---~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~--~~~~~~~L~~L~~~G~i 192 (269)
++.+ +|++++|+||++... ..++++.+++++++||++|++||||+|+||+|+... ..++|++|++||++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9875 389999999998632 236899999999999999999999999999998732 78999999999999999
Q ss_pred cEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccccccccC
Q 024322 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLFFLT 266 (269)
Q Consensus 193 r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~~~ 266 (269)
|+||||||+.+.++++++.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.|++++..
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~ 212 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLP 212 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCC
Confidence 99999999999999998764 36899999999999998765 599999999999999999999999877643
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1e-45 Score=324.83 Aligned_cols=191 Identities=29% Similarity=0.452 Sum_probs=172.8
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHH
Q 024322 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al 117 (269)
.++|++ |.+||.||||||+. +++++.+.++.|++.||||||||..|+| |+-+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 688887 99999999999972 3488999999999999999999999999 99999999
Q ss_pred HhccCC--CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-----------------ChhH
Q 024322 118 KERKQR--DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (269)
Q Consensus 118 ~~~~~~--~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~-----------------~~~~ 178 (269)
++...+ .+|+++||+||+|+ ..+.++.++.++++||++|++||+|||++|||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 976432 36999999999986 55899999999999999999999999999998653 2457
Q ss_pred HHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCc
Q 024322 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 179 ~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G 258 (269)
+|++|++++++|+||+||||||+..++++++..++ ++|.++|+++||+.++.. ++++|+++||.+.|||||+++
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~k---i~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAK---IKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCC---CCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 99999999999999999999999999999998763 899999999999888765 999999999999999999876
Q ss_pred cc
Q 024322 259 EL 260 (269)
Q Consensus 259 ~L 260 (269)
.=
T Consensus 214 ~~ 215 (300)
T KOG1577|consen 214 GR 215 (300)
T ss_pred CC
Confidence 53
No 10
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.2e-44 Score=302.43 Aligned_cols=205 Identities=22% Similarity=0.428 Sum_probs=187.8
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHH
Q 024322 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (269)
Q Consensus 36 m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~ 115 (269)
|++.+|++.|+++|++.+|+|++.. |+ .+.++....|..|+|.|+++||-|++||++.+ |+.+|.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7889999889999999999999865 44 34488899999999999999999999999998 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCC----------CCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHHH
Q 024322 116 FIKERKQRDPEVEVTVATKFAA----------LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (269)
Q Consensus 116 al~~~~~~~~R~~l~I~tK~~~----------~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~ 184 (269)
+|+-.+.. |+++.|+||++. ..++.+.++|.+++|+||++|+|||+|+++||+||+ .+.+|+-+++.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99988765 899999999995 247889999999999999999999999999999999 77999999999
Q ss_pred HHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccc
Q 024322 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGEL 260 (269)
Q Consensus 185 ~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L 260 (269)
.|+++||||++|||||++.+++-+.+... .++.+||+++|+++.....++.+++|+++.|.+++||||++|.+
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~ 216 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL 216 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc
Confidence 99999999999999999999998877633 46899999999999988888999999999999999999988844
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=7.7e-43 Score=309.08 Aligned_cols=183 Identities=29% Similarity=0.493 Sum_probs=162.1
Q ss_pred cccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 024322 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (269)
Q Consensus 46 ~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~ 125 (269)
.+||+||||||+++. +++.+++++|++.|+|+||||+.||+ |+.+|++|++.+. +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999997632 67889999999999999999999996 9999999986542 3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CChhHHHHHHHHHHHcCcccEEEecCccH
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~~ 202 (269)
|+++||+||++. ...+++.+++++++||++||+||||+|++|||++ .+.+++|++|++|+++||||+||||||+.
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999864 4578999999999999999999999999999975 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcccc
Q 024322 203 KRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELL 261 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~ 261 (269)
++++++++.+ +. +|+++|++||++++.. +++++|+++||++++|+||++|.+.
T Consensus 134 ~~l~~~~~~~---~~~~~~~~Q~~~~~~~~~~---~ll~~~~~~gi~v~a~spl~~G~~~ 187 (267)
T PRK11172 134 ALMKQAIAAV---GAENIATNQIELSPYLQNR---KVVAFAKEHGIHVTSYMTLAYGKVL 187 (267)
T ss_pred HHHHHHHHhc---CCCCCeEEeeecCCCCCcH---HHHHHHHHCCCEEEEECCCCCCccc
Confidence 9999987642 23 6899999999998752 5999999999999999999999764
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=4.8e-43 Score=314.01 Aligned_cols=198 Identities=21% Similarity=0.244 Sum_probs=167.7
Q ss_pred CcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCC
Q 024322 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (269)
Q Consensus 45 g~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~ 124 (269)
+++||+||||||.+|....|....++..+++++.++|+.|++.|||+||||+.||. ||+.+|++|++..
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--------SE~~lG~al~~~~--- 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--------AETVLGQLIPRPV--- 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--------HHHHHhhhhccCC---
Confidence 57899999999999753111111133567899999999999999999999999985 5999999997421
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCh-hHHHHHHHHHHHcCcccEEEecCcc
Q 024322 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 125 ~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~--~~~-~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (269)
+++++|+||. ...+++.+++++++||++||+||||+|++|+|+. .+. +++|++|++|+++||||+||||||+
T Consensus 71 -~~~~~i~tk~----~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 -PFRVTLSTVR----ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -ceEeeccccc----ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 4679999986 3467899999999999999999999999999975 223 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcccccc
Q 024322 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLF 263 (269)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~ 263 (269)
++++.++... .+|+++|++||++++..+..+++++|+++||++++|+||++|+|++.
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCC
Confidence 9998877542 58999999999999876433599999999999999999999999853
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.3e-42 Score=307.73 Aligned_cols=197 Identities=23% Similarity=0.352 Sum_probs=168.9
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHH
Q 024322 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al 117 (269)
+++|+ |++||+||||||++++...|+. ..+++++.++|+.|+++|||+||||+.||+|.+ |+.+|+++
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l 76 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREAL 76 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHH
Confidence 34555 8999999999999976533442 235688999999999999999999999999877 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCC-------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCC------CCChhHHHHHHH
Q 024322 118 KERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG------IWGNEGFIDGLG 184 (269)
Q Consensus 118 ~~~~~~~~R~~l~I~tK~~~~-------~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~------~~~~~~~~~~L~ 184 (269)
+.. |++++|+||++.. ....+++.+++++++||++|++||||+|++|+++ ..+.+++|++|+
T Consensus 77 ~~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~ 151 (290)
T PRK10376 77 HPY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLA 151 (290)
T ss_pred hcC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHH
Confidence 642 7999999998631 2357899999999999999999999999988742 234678999999
Q ss_pred HHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCc
Q 024322 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 185 ~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G 258 (269)
+|+++||||+||||||+.++++++.+. .+++++|++||++++..+ +++++|+++||++++|+||+++
T Consensus 152 ~l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 152 ELQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred HHHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCC
Confidence 999999999999999999999998765 478999999999987643 5999999999999999999854
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.5e-42 Score=307.28 Aligned_cols=196 Identities=35% Similarity=0.581 Sum_probs=166.2
Q ss_pred cceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 024322 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (269)
Q Consensus 50 ~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l 129 (269)
+||||||+++.. ..+++++.++|+.|++.|||+||||+.||+|.+ |+.+|++|++.+. +|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~~--~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSRV--PRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTSS--TGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------ccccccccccccc--ccccc
Confidence 689999998752 467899999999999999999999999988877 9999999999332 38999
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CC-hhHHHHHHHHHHHcCcccEEEecCccHHH
Q 024322 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (269)
Q Consensus 130 ~I~tK~~---~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~-~~~~~~~L~~L~~~G~ir~iGvS~~~~~~ 204 (269)
+|+||+. .....++++.+++++++||++|++||||+|++|+|+. .. ..++|++|++|+++|+||+||||||+.+.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999991 1236789999999999999999999999999999987 44 79999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccccccccC
Q 024322 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLFFLT 266 (269)
Q Consensus 205 i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~~~ 266 (269)
++++. +...++|+++|++||++++.... +++++|+++||++++|+|+++|.|++++..
T Consensus 144 l~~~~---~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~ 201 (283)
T PF00248_consen 144 LEAAL---KIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKS 201 (283)
T ss_dssp HHHHH---TCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTT
T ss_pred ccccc---ccccccccccccccccccccccc-cccccccccccccccccccccCcccccccc
Confidence 99982 23347899999999999555444 699999999999999999999999988754
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.5e-40 Score=295.56 Aligned_cols=186 Identities=26% Similarity=0.404 Sum_probs=163.9
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHH
Q 024322 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al 117 (269)
+++|. +|++||+||||||+++ .+++.++|++|++.|+|+||||+.||+ |+.+|++|
T Consensus 6 ~~~l~-~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al 61 (275)
T PRK11565 6 VIKLQ-DGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKAL 61 (275)
T ss_pred eEEcC-CCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHHH
Confidence 46674 5999999999999752 378999999999999999999999996 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--ChhHHHHHHHHHHHcCcccEE
Q 024322 118 KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAV 195 (269)
Q Consensus 118 ~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~--~~~~~~~~L~~L~~~G~ir~i 195 (269)
++.+. +|++++|+||++ ..+++.+++++++||++|++||||+|++|+|+.. +..++|++|++|+++|+||+|
T Consensus 62 ~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~i 135 (275)
T PRK11565 62 KEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSI 135 (275)
T ss_pred HHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEE
Confidence 97542 379999999984 3567899999999999999999999999999763 367999999999999999999
Q ss_pred EecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcc
Q 024322 196 GVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 196 GvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~ 259 (269)
|||||+.+++++++.. .+++|.++|++||++.+.. +++++|+++||++++|+||++|.
T Consensus 136 GvSn~~~~~l~~~~~~---~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 136 GVCNFQIHHLQRLIDE---TGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred eeccCCHHHHHHHHHh---CCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCC
Confidence 9999999999998643 3467999999999998753 59999999999999999999773
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=6e-38 Score=279.10 Aligned_cols=205 Identities=22% Similarity=0.286 Sum_probs=180.0
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHH
Q 024322 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (269)
Q Consensus 36 m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~ 115 (269)
|.||+++++|.++|.+|||+|++... |. ..++.+.+.++|++|++.|||+||||+.|..|.+ |..+|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 78999999999999999999998765 33 4567899999999999999999999999976666 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hhHHHHHHHHHHHcC
Q 024322 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLGDAVEQG 190 (269)
Q Consensus 116 al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-----~~~~~~~L~~L~~~G 190 (269)
||++.. |++|+++||+... .--+++.+++-++++|++|++||+|+|+||...... ..+++++++++|.+|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999887 8999999999641 245788999999999999999999999999876521 234799999999999
Q ss_pred cccEEEecCc-cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcch-hhHHHHHHHcCCeEEEcccccCccccc
Q 024322 191 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGELLL 262 (269)
Q Consensus 191 ~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~l~~~~~~~gi~via~spl~~G~L~~ 262 (269)
|||++|+|.| +.+.+.+++.. .+++++|++||.++.+... -+.+++|.++|++|+.++|+.+|-|+-
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~ 212 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLY 212 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCccc
Confidence 9999999999 67888888775 6799999999999976542 148999999999999999999998875
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.4e-37 Score=262.64 Aligned_cols=208 Identities=23% Similarity=0.303 Sum_probs=180.4
Q ss_pred cccceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHH
Q 024322 34 TAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLL 113 (269)
Q Consensus 34 ~~m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~l 113 (269)
+.|.||.||+||++||+|+||...++.. +++.+.|+....+..|++.|||+|||++.||.+++ |+.+
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~~l 86 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EEGL 86 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HHHH
Confidence 4699999999999999999999998876 55567788888888899999999999999999998 9999
Q ss_pred HHHHHhccCCCCCCcEEEEecCCCCC------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hhHHHHH
Q 024322 114 GRFIKERKQRDPEVEVTVATKFAALP------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDG 182 (269)
Q Consensus 114 G~al~~~~~~~~R~~l~I~tK~~~~~------~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-----~~~~~~~ 182 (269)
|.++++.| |+..||+||++.+. ++++.+.++++|++||+||++||+|++++|..+..+ ..|++.+
T Consensus 87 g~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~ 162 (342)
T KOG1576|consen 87 GLALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPA 162 (342)
T ss_pred HHHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHH
Confidence 99999987 99999999999632 678999999999999999999999999999988743 5689999
Q ss_pred HHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEc--ccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccc
Q 024322 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGEL 260 (269)
Q Consensus 183 L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q--~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L 260 (269)
|++||++||+|+||++.++.+.+.++++. .....+++- -+|++.+..-. ..+++.+.+|++|+.-++++.|+|
T Consensus 163 Le~lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgLL 237 (342)
T KOG1576|consen 163 LEELKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGLL 237 (342)
T ss_pred HHHHHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHHh
Confidence 99999999999999999999999999753 223566666 45555443322 467888899999999999999999
Q ss_pred ccc
Q 024322 261 LLF 263 (269)
Q Consensus 261 ~~~ 263 (269)
+.+
T Consensus 238 t~~ 240 (342)
T KOG1576|consen 238 TNQ 240 (342)
T ss_pred hcC
Confidence 964
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.48 E-value=2.9e-07 Score=78.64 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024322 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~s 253 (269)
..+.|+.||+|+.+|+|..||+|.|+..+++++++.++ +.|.++|++..-+..-+. +|.+||.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 35789999999999999999999999999999998875 899999999999887776 59999999999999886
No 19
>PRK08392 hypothetical protein; Provisional
Probab=93.79 E-value=3.8 Score=34.90 Aligned_cols=152 Identities=16% Similarity=0.264 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHH---hccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 76 ~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~---~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
...+.++.|.+.|++.|=.+++.--.. ..-+-..++ +..++. +-+|++..-+.. .++. ....+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~-------~~~~~~y~~~i~~l~~~~-~i~il~GiE~~~-----~~~~-~~~~~ 80 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFT-------PSKFNAYINEIRQWGEES-EIVVLAGIEANI-----TPNG-VDITD 80 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccc-------hhhHHHHHHHHHHHhhcc-CceEEEeEEeee-----cCCc-chhHH
Confidence 355689999999999997776642110 111222222 222110 223343343322 1111 23333
Q ss_pred HHHHHhCCCccceEEee-cCCCCChhHHHHHHHHHHHcCcccEEEecC-------c-cHHHHHHHHHHHHhcCCCEeEEc
Q 024322 153 DSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-------Y-SEKRLRNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH-~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~-------~-~~~~i~~~~~~~~~~~~~~~~~q 223 (269)
+.+++ .||+ +.-+| +++....++..+.+.++.+.+.+.-+|=-. + ..+.++++++.+.+.|..+.+|-
T Consensus 81 ~~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt 157 (215)
T PRK08392 81 DFAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS 157 (215)
T ss_pred HHHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC
Confidence 44443 4655 66778 443233457788888888899877776321 1 23677888888888887787774
Q ss_pred ccCCccCCCcchhhHHHHHHHcCCeEE
Q 024322 224 VNYSLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 224 ~~~n~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
.+. .+.. .+++.|++.|+.++
T Consensus 158 -~~~----~p~~-~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 -RYR----VPDL-EFIRECIKRGIKLT 178 (215)
T ss_pred -CCC----CCCH-HHHHHHHHcCCEEE
Confidence 221 2223 49999999998754
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.34 E-value=4.1 Score=36.73 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
++++..+.+..+++.|++.|+.-- |.... .+.-.=+++++.. . ++-|.-+.. ..++.+...+ +-
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~-----~d~~~v~~lr~~~----g-~~~l~vD~n---~~~~~~~A~~-~~ 197 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLE-----DDIERIRAIREAA----P-DARLRVDAN---QGWTPEEAVE-LL 197 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChh-----hHHHHHHHHHHhC----C-CCeEEEeCC---CCcCHHHHHH-HH
Confidence 347777888888999999998732 32100 0222223333322 1 445666652 2344443222 22
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCC
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (269)
+.|+.+ ++.++..|-. .+-++.+.+|++.-.|. ..|=+-++.+.++++++. .-.+++|+..+.+-.
T Consensus 198 ~~l~~~-----~l~~iEeP~~---~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GG 264 (316)
T cd03319 198 RELAEL-----GVELIEQPVP---AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGG 264 (316)
T ss_pred HHHHhc-----CCCEEECCCC---CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCC
Confidence 334444 4444454432 23367788888887666 445555688888888664 347888887665432
Q ss_pred CcchhhHHHHHHHcCCeEEEcccccCc
Q 024322 232 KPEENGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 232 ~~~~~~l~~~~~~~gi~via~spl~~G 258 (269)
-..-..+..+|+++|+.++..+-+..+
T Consensus 265 i~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 265 LTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 222225899999999999987655444
No 21
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=92.19 E-value=6 Score=34.66 Aligned_cols=158 Identities=12% Similarity=0.089 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
.++..+.++.+.+.|++.|-.-- |.. . ..+.-.=+++++.. ..++-|.-... ..++.+...+-+ +
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~~-~----~~d~~~v~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~-~ 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GRD-P----ARDVAVVAALREAV----GDDAELRVDAN---RGWTPKQAIRAL-R 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CCC-H----HHHHHHHHHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHH-H
Confidence 46677788888999999887532 110 0 00222223344322 13444444432 234554433333 2
Q ss_pred HHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCC
Q 024322 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (269)
.|+.++ +.++..|-. .+-++.+.+|++.-.+. ..|=+-++...++++++. ...+++|+..+..-.-
T Consensus 151 ~l~~~~-----i~~iEeP~~---~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 217 (265)
T cd03315 151 ALEDLG-----LDYVEQPLP---ADDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGL 217 (265)
T ss_pred HHHhcC-----CCEEECCCC---cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCH
Confidence 334444 445565543 23367777888775555 445555688888887664 3578888877665432
Q ss_pred cchhhHHHHHHHcCCeEEEcccccCcc
Q 024322 233 PEENGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~spl~~G~ 259 (269)
.+-..+.+.|+++|+.++..+.+..|+
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHHHHHcCCcEEecCccchHH
Confidence 222258999999999999887665443
No 22
>PRK07328 histidinol-phosphatase; Provisional
Probab=91.67 E-value=8.9 Score=33.79 Aligned_cols=167 Identities=16% Similarity=0.228 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHCCCCEEEcccccCCC------CCCCCCchHHHHHHHHHh---ccCCCCCCcEEEEecCCCCCCCCCHHH
Q 024322 76 AAKAAFDTSLDNGITFFDTAEVYGSR------ASFGAINSETLLGRFIKE---RKQRDPEVEVTVATKFAALPWRLGRQS 146 (269)
Q Consensus 76 ~~~~~l~~Al~~Gvn~~DtA~~Yg~g------~~~~~~~se~~lG~al~~---~~~~~~R~~l~I~tK~~~~~~~~~~~~ 146 (269)
...+.+++|++.|+..+=.+++.-.. ..........-+-+.++. ..+++++=+|++.--+... + .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-----~-~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-----P-G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-----C-C
Confidence 35568999999999987766553210 000000011122222222 2211112355555555321 2 2
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCC--------------ChhHH----HHHHHHHHHcCcccEEEecCc--------
Q 024322 147 VLAALKDSLFRLGLSSVELYQLHWAGIW--------------GNEGF----IDGLGDAVEQGLVKAVGVSNY-------- 200 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDll~lH~p~~~--------------~~~~~----~~~L~~L~~~G~ir~iGvS~~-------- 200 (269)
....+++.|++...||+ +..+|+.+.. +.+++ ++.+.++.+.|.+.-||=-+.
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCC
Confidence 34556667777777777 7788985421 11222 345777888888887773321
Q ss_pred ---cHHHHHHHHHHHHhcCCCEeEEcccC--CccCCCcchhhHHHHHHHcCCeEE
Q 024322 201 ---SEKRLRNAYEKLKKRGIPLASNQVNY--SLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 201 ---~~~~i~~~~~~~~~~~~~~~~~q~~~--n~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
-.+.++++++.+.+.+..+.+|-..+ ..-...+.. .+++.|++.|+.++
T Consensus 172 ~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~-~il~~~~~~g~~it 225 (269)
T PRK07328 172 REDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSP-ALLRACRERGIPVV 225 (269)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCH-HHHHHHHHcCCCEE
Confidence 12456788888888888787775432 111222222 59999999999854
No 23
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=91.54 E-value=9.4 Score=34.61 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=92.3
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
...+.++..++++.+.+.|++.+.-. | |+.. . ..-+-+.++.......-.++.|+|-... +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPl-l---~~~l~~li~~i~~~~~~~~i~itTNG~l---------l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLT---G-GEPL-L---RKDLEDIIAALAALPGIRDLALTTNGYL---------LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEE---C-CCCc-C---ccCHHHHHHHHHhcCCCceEEEEcCchh---------HHH
Confidence 44677999999999999999877643 3 2210 0 1112233332221100246777777521 122
Q ss_pred HHHHHHHHhCCCccceEEeecCCC---------CChhHHHHHHHHHHHcCc----ccEEEecCccHHHHHHHHHHHHhcC
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~---------~~~~~~~~~L~~L~~~G~----ir~iGvS~~~~~~i~~~~~~~~~~~ 216 (269)
.+ +.|+..|++.|- +-+|..+. ...++++++++.+++.|. |..+-+.+.+.+++.++++.++..+
T Consensus 110 ~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 RA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred HH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 22 334555655442 34444332 236889999999999885 2344455677789999999887766
Q ss_pred CCEeEEcccCCccCCCc--------chhhHHHHHHHcCCeEEEc
Q 024322 217 IPLASNQVNYSLIYRKP--------EENGVKAACDELGITLIAY 252 (269)
Q Consensus 217 ~~~~~~q~~~n~~~~~~--------~~~~l~~~~~~~gi~via~ 252 (269)
+.+ .-++|.++.... ...++++..+++++.+...
T Consensus 188 v~v--~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 229 (331)
T PRK00164 188 IQL--RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPR 229 (331)
T ss_pred CeE--EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccccc
Confidence 543 344455443221 1125788888876654443
No 24
>PRK13796 GTPase YqeH; Provisional
Probab=91.42 E-value=4.2 Score=37.74 Aligned_cols=144 Identities=19% Similarity=0.181 Sum_probs=92.1
Q ss_pred ccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCC---CCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 024322 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (269)
Q Consensus 49 ~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~G---vn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~ 125 (269)
..+|--|.++-. +++......+.++..++++..-+.- +-.+|..+.-+.- ...+.+.+. .
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~--~---- 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVG--N---- 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhC--C----
Confidence 456666665532 3443344566677777777776554 4467765543331 223333332 1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHH
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i 205 (269)
+.-++|.+|.-..+.....+.+++-++...+.+|....|++++-.......++.++.+.++.+.+.+-.+|.+|.....+
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 45788999985433334456666666776777787656888777655566888899998887788899999999965444
Q ss_pred -HHHH
Q 024322 206 -RNAY 209 (269)
Q Consensus 206 -~~~~ 209 (269)
..++
T Consensus 177 iN~L~ 181 (365)
T PRK13796 177 INRII 181 (365)
T ss_pred HHHHH
Confidence 4443
No 25
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=91.18 E-value=12 Score=34.14 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=82.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
...+.++..++++.+.+.|+..|--+ | |+.. . ..-+-+.++.........++.|+|-... +.+
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPl-l---r~dl~~li~~i~~~~~l~~i~itTNG~l---------l~~ 105 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLT---G-GEPL-V---RRGCDQLVARLGKLPGLEELSLTTNGSR---------LAR 105 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCC-c---cccHHHHHHHHHhCCCCceEEEEeChhH---------HHH
Confidence 34677999999999999999877643 3 2110 0 1112222222211100125677776521 222
Q ss_pred HHHHHHHHhCCCccceEEeecCCC---------CChhHHHHHHHHHHHcCc--c--cEEEecCccHHHHHHHHHHHHhcC
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~---------~~~~~~~~~L~~L~~~G~--i--r~iGvS~~~~~~i~~~~~~~~~~~ 216 (269)
.-+.|+..|++++- +-|+..++ ...+.+++.++.+++.|. | ..+-+...+.+++.++++.+.+.+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 33456666777664 35555432 226789999999999985 2 334455678899999999988877
Q ss_pred CCEeEEcccCCccC
Q 024322 217 IPLASNQVNYSLIY 230 (269)
Q Consensus 217 ~~~~~~q~~~n~~~ 230 (269)
+.+.+ ++|-++.
T Consensus 184 i~~~~--ie~mP~g 195 (329)
T PRK13361 184 LDIAF--IEEMPLG 195 (329)
T ss_pred CeEEE--EecccCC
Confidence 65433 3444433
No 26
>PRK08609 hypothetical protein; Provisional
Probab=91.16 E-value=10 Score=37.47 Aligned_cols=163 Identities=15% Similarity=0.151 Sum_probs=92.4
Q ss_pred HHHHHHHHHHCCCCEEEcccccCCCC-CCCCCchHHHHHHH---HHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 77 AKAAFDTSLDNGITFFDTAEVYGSRA-SFGAINSETLLGRF---IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 77 ~~~~l~~Al~~Gvn~~DtA~~Yg~g~-~~~~~~se~~lG~a---l~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
..++++.|.+.|+++|=.++++.... ..+ .+...+-.. +++....++.=+|++..-+.. .++....-.+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~--~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i-----~~~g~~d~~~ 423 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANG--LTEERLLEQAEEIKALNEKYPEIDILSGIEMDI-----LPDGSLDYDD 423 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCC--CCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEee-----cCCcchhhcH
Confidence 44489999999999999888863210 000 113333322 222222111124444444432 2222233333
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecC------c--cHHHHHHHHHHHHhcCCCEeEEcc
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~------~--~~~~i~~~~~~~~~~~~~~~~~q~ 224 (269)
..|+. .||+ +.-+|++...+.++.++.+.++.+.|.+.-||=-. + -...++++++.+.+.|..+.+|-.
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa~ 500 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNAN 500 (570)
T ss_pred HHHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcCC
Confidence 35554 5666 77789765455678889999999989888776332 1 135567777776766765555543
Q ss_pred cCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 225 NYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 225 ~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
.+ ..... ..+++.|.+.|+.+ +.++
T Consensus 501 ~~---r~~~~-~~~~~~~~e~Gv~i-~igS 525 (570)
T PRK08609 501 PN---RLDLS-AEHLKKAQEAGVKL-AINT 525 (570)
T ss_pred cc---ccCcc-HHHHHHHHHcCCEE-EEEC
Confidence 33 22222 25899999999975 4443
No 27
>PRK07945 hypothetical protein; Provisional
Probab=90.96 E-value=13 Score=34.17 Aligned_cols=162 Identities=11% Similarity=0.051 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHh---ccCCCCCC-cEEEEecCCCCCCCCCHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE---RKQRDPEV-EVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~---~~~~~~R~-~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
....+.+..|++.|+..+=.+++...... ....+...+-..+.. ..+++ ++ +|++.--+...+ +...+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~-~~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~~--- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTV-ANGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQE--- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcchh---
Confidence 34567899999999998887776432100 000112223222222 22222 12 333333332211 1222222
Q ss_pred HHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecC----------cc--HHHHHHHHHHHHhcCCC
Q 024322 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN----------YS--EKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~----------~~--~~~i~~~~~~~~~~~~~ 218 (269)
++.|+. .||+ +..+|+....+.++..+.|.++.+.+.+..||=-. .+ ...++++++.+.+.+..
T Consensus 185 -~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~ 260 (335)
T PRK07945 185 -PELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTA 260 (335)
T ss_pred -HHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCE
Confidence 333433 5666 66789865445566778888888888888888321 01 11246666777777877
Q ss_pred EeEEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 024322 219 LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
+.+|--... ..+.. .+++.|++.|+.++
T Consensus 261 lEINt~~~r---~~P~~-~il~~a~e~G~~vt 288 (335)
T PRK07945 261 VEINSRPER---RDPPT-RLLRLALDAGCLFS 288 (335)
T ss_pred EEEeCCCCC---CCChH-HHHHHHHHcCCeEE
Confidence 877754332 22332 59999999999864
No 28
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=90.81 E-value=2.1 Score=37.49 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHH-----------------HHHhccCCCCCCcEEEEec
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR-----------------FIKERKQRDPEVEVTVATK 134 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~-----------------al~~~~~~~~R~~l~I~tK 134 (269)
.+.++..++.++|-+.|+.||=|...... -..+-+ .|+.... ....++|+|=
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s---------~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG 121 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEES---------VDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTG 121 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHH---------HHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-T
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHH---------HHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECC
Confidence 56799999999999999999988644321 222211 1111111 1467888886
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC---hhHHHHHHHHHHHc-CcccEEEecCccHHHHHHHHH
Q 024322 135 FAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 135 ~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~---~~~~~~~L~~L~~~-G~ir~iGvS~~~~~~i~~~~~ 210 (269)
. .+.+.|+++++...++- .-|+.++|+...+| .+--+..|..|++. | -.||+|.|+.....-++.
T Consensus 122 ~------stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~--~~vG~SDHt~g~~~~~~A 190 (241)
T PF03102_consen 122 M------STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG--VPVGYSDHTDGIEAPIAA 190 (241)
T ss_dssp T--------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST--SEEEEEE-SSSSHHHHHH
T ss_pred C------CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC--CCEEeCCCCCCcHHHHHH
Confidence 6 56777777777764543 47899999987644 23346667777766 4 678999997654444444
Q ss_pred H
Q 024322 211 K 211 (269)
Q Consensus 211 ~ 211 (269)
.
T Consensus 191 v 191 (241)
T PF03102_consen 191 V 191 (241)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=90.39 E-value=9.9 Score=34.80 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHCCCCEEEccc--ccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAE--VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~--~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
+.++..+....+.+.|++.|-.-- .|..... ...-.+.+ +++++.. ..++.|..... ..++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~--~~~d~~~v-~~ir~~~----g~~~~l~vDaN---~~~~~~~a~~- 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGED--LREDLARV-RAVREAV----GPDVDLMVDAN---GRWDLAEAIR- 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHH--HHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHHH-
Confidence 357777788888999999887521 1210000 00002222 3333321 13555555552 2345444333
Q ss_pred HHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCcc
Q 024322 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (269)
.+++|. ..++.+++.|-. .+-++.+.+|++.-.+. ..+=+-++.+.++++++. ...+++|+.....
T Consensus 208 ---~~~~l~--~~~i~~iEqP~~---~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~ 274 (357)
T cd03316 208 ---LARALE--EYDLFWFEEPVP---PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKV 274 (357)
T ss_pred ---HHHHhC--ccCCCeEcCCCC---ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCcccc
Confidence 333332 234556666643 23467788888875555 444555688888888764 3478888877665
Q ss_pred CCCcchhhHHHHHHHcCCeEEEccc
Q 024322 230 YRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
-.-.....+.+.|+++|+.++..+.
T Consensus 275 GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 275 GGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred CCHHHHHHHHHHHHHcCCeEeccCC
Confidence 4222222589999999999887764
No 30
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.76 E-value=0.95 Score=41.14 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=85.6
Q ss_pred ccccccceeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCC--EEEcccccCCCCCCCCCc
Q 024322 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAIN 108 (269)
Q Consensus 31 ~~~~~m~~~~Lg~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn--~~DtA~~Yg~g~~~~~~~ 108 (269)
++..+|++..++ .|..|-.+|+|. +|.- .++.|-.+|.+ .||+++
T Consensus 169 TvYspLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~------------ 215 (360)
T KOG0023|consen 169 TVYSPLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSS------------ 215 (360)
T ss_pred EEeehhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCc------------
Confidence 444578888888 588899999987 5443 47778788877 667643
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHH
Q 024322 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (269)
Q Consensus 109 se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~ 188 (269)
+---++++..+ .|.||.+.- +++ ..+++..++. .+.|.+-.| .....-..+.-||.
T Consensus 216 --~kkeea~~~LG-----Ad~fv~~~~-------d~d-~~~~~~~~~d-g~~~~v~~~--------a~~~~~~~~~~lk~ 271 (360)
T KOG0023|consen 216 --KKKEEAIKSLG-----ADVFVDSTE-------DPD-IMKAIMKTTD-GGIDTVSNL--------AEHALEPLLGLLKV 271 (360)
T ss_pred --hhHHHHHHhcC-----cceeEEecC-------CHH-HHHHHHHhhc-Ccceeeeec--------cccchHHHHHHhhc
Confidence 22235677776 355554432 123 2333333332 222222222 22334556777899
Q ss_pred cCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024322 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 189 ~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (269)
.|++-.+|+-.. +..+...-- -+--..+-.|.+-...+.+++++||.+++|.
T Consensus 272 ~Gt~V~vg~p~~-~~~~~~~~l-------il~~~~I~GS~vG~~ket~E~Ldf~a~~~ik 323 (360)
T KOG0023|consen 272 NGTLVLVGLPEK-PLKLDTFPL-------ILGRKSIKGSIVGSRKETQEALDFVARGLIK 323 (360)
T ss_pred CCEEEEEeCcCC-cccccchhh-------hcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence 999999999874 222111110 1222333445555445555677777777653
No 31
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=86.98 E-value=23 Score=32.07 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
+++..+.+..+.+.|++.|=.-- +. .. +.-.=+++++.. +.-++.|=.- ..++.+..+
T Consensus 133 ~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~------d~~~v~~vr~~~---~~~~l~vDaN-----~~~~~~~a~----- 190 (324)
T TIGR01928 133 DEQMLKQIESLKATGYKRIKLKI--TP-QI------MHQLVKLRRLRF---PQIPLVIDAN-----ESYDLQDFP----- 190 (324)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEe--CC-ch------hHHHHHHHHHhC---CCCcEEEECC-----CCCCHHHHH-----
Confidence 36666777888899999874321 11 11 222333444332 1122332221 234554432
Q ss_pred HHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCC
Q 024322 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (269)
.+++|. ..++.++..|-. .+-++.+.+|+++-.+. ..|=|.++...+.++++. --.+++|+...-+-.-
T Consensus 191 ~~~~l~--~~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGi 260 (324)
T TIGR01928 191 RLKELD--RYQLLYIEEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGL 260 (324)
T ss_pred HHHHHh--hCCCcEEECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCH
Confidence 133332 245666666542 34467788888875554 677778888888888654 2478888776654322
Q ss_pred cchhhHHHHHHHcCCeEEEcccccCcc
Q 024322 233 PEENGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~spl~~G~ 259 (269)
.+-..+...|+++|+.++..+.+..|+
T Consensus 261 t~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 261 TEVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHHHHHHcCCeEEEcceEcccH
Confidence 222258999999999999876665553
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=86.41 E-value=3.5 Score=34.72 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=96.0
Q ss_pred HHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh
Q 024322 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (269)
Q Consensus 79 ~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L 158 (269)
++|..-++-|-+.+|-. .|. -.+-+.|++.. ++.. .| -+.+.+.+.+++.+-+.-.
T Consensus 5 ~~I~~~I~pgsrVLDLG----CGd--------G~LL~~L~~~k------~v~g---~G---vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLG----CGD--------GELLAYLKDEK------QVDG---YG---VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEecC----CCc--------hHHHHHHHHhc------CCeE---EE---EecCHHHHHHHHHcCCCEE
Confidence 35666778899999964 332 12445565422 1110 01 3566777777775554433
Q ss_pred -----------CCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCC
Q 024322 159 -----------GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 159 -----------~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (269)
.-+..|.+.+..--. ....-...|+++..-|+---|++.||.-+..+.-+-. .|-.|..-+.+|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ-~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~---~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQ-AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLL---RGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHH-hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHh---cCCCCCCCCCCCc
Confidence 333444443332100 0122234466677778877899999988777655432 2456888999999
Q ss_pred ccCCCcch----hhHHHHHHHcCCeEEEcccccCcc
Q 024322 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 228 ~~~~~~~~----~~l~~~~~~~gi~via~spl~~G~ 259 (269)
-++....+ .+..++|++.|+.|.-..++..+.
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 98876543 268999999999999999998876
No 33
>PLN02681 proline dehydrogenase
Probab=85.46 E-value=35 Score=32.75 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHCCCC-EEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn-~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
+...++.++|.+.|++ +||.=+.|-.... ..+.-+..++++....+.-|+++--.- -..+++.+...++.
T Consensus 220 ~rl~~i~~~A~~~gv~l~IDAE~s~~q~ai------d~l~~~l~~~yN~~~~~~~V~~T~QaY---Lk~t~~~l~~~l~~ 290 (455)
T PLN02681 220 ERLQKLCERAAQLGVPLLIDAEYTSLQPAI------DYITYDLAREFNKGKDRPIVYGTYQAY---LKDARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCcccchhHH------HHHHHHHHHHhccccCCCcEEEEEeCc---cccCHHHHHHHHHH
Confidence 4567788999999999 7786555443222 344444445554210024456555541 13456677777776
Q ss_pred HHHH---hCC-----CccceE-----EeecCCC--CC----hhHHHHHHHHHHH---cCcccEEEecCccHHHHHHHHHH
Q 024322 154 SLFR---LGL-----SSVELY-----QLHWAGI--WG----NEGFIDGLGDAVE---QGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 154 sL~~---L~~-----d~iDll-----~lH~p~~--~~----~~~~~~~L~~L~~---~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
+.+. +|+ -|+|-= ...||++ .. ....-..++.|.+ .+. -++.|.+||.+.+..+++.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHH
Confidence 6543 121 122211 1123322 11 2222334444444 244 4889999999999999998
Q ss_pred HHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024322 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~ 257 (269)
+.+.++++.-.+++|-.+..-.+ ++-....+.|..|.-|-|+|.
T Consensus 370 ~~~~gi~~~~~~veF~qL~GM~d--~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLGMSD--NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHcCCCCCCCCEEEeccCCCCH--HHHHHHHhcCCCEEEEeeccC
Confidence 88877754422333333333222 355566677988988888864
No 34
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=85.41 E-value=28 Score=31.53 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
...+.++..++++.+.+.|++.|.-+ | |+..--..-.+++.. +++... -.++.|+|-... +.+
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~lt---G-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~l---------l~~ 103 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLT---G-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGLL---------LAR 103 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---C-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCchh---------HHH
Confidence 34677999999999999999877642 3 211000001222222 332210 136888886521 112
Q ss_pred HHHHHHHHhCCCccceEEeecCCC----------CChhHHHHHHHHHHHcCcc--c--EEEecCccHHHHHHHHHHHHhc
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKR 215 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~----------~~~~~~~~~L~~L~~~G~i--r--~iGvS~~~~~~i~~~~~~~~~~ 215 (269)
.-+.|++.|++++- +-++..++ ...+.+++.++.+++.|.- + .+-+.+.+.+++.++++.+.+.
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 23445666665443 33443322 1368899999999999853 2 2334567888999999988887
Q ss_pred CCCEeE
Q 024322 216 GIPLAS 221 (269)
Q Consensus 216 ~~~~~~ 221 (269)
++.+.+
T Consensus 182 gv~~~~ 187 (334)
T TIGR02666 182 GVTLRF 187 (334)
T ss_pred CCeEEE
Confidence 765444
No 35
>PRK06740 histidinol-phosphatase; Validated
Probab=84.77 E-value=16 Score=33.48 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCC-----C-------------hhHHHHHHHHHHHcCcccEEEecC------cc---
Q 024322 149 AALKDSLFRLGLSSVELYQLHWAGIW-----G-------------NEGFIDGLGDAVEQGLVKAVGVSN------YS--- 201 (269)
Q Consensus 149 ~~v~~sL~~L~~d~iDll~lH~p~~~-----~-------------~~~~~~~L~~L~~~G~ir~iGvS~------~~--- 201 (269)
..+++.|+....||+ +.-+|+.+.. . ....++.+.++.+.|.+..||=-. +.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 445666767777877 7788975320 0 123567788888999988887221 11
Q ss_pred ---HHHHHHHHHHHHhcCCCEeEEcc-cCC--ccCCCcchhhHHHHHHHcCCeEEE
Q 024322 202 ---EKRLRNAYEKLKKRGIPLASNQV-NYS--LIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 202 ---~~~i~~~~~~~~~~~~~~~~~q~-~~n--~~~~~~~~~~l~~~~~~~gi~via 251 (269)
.+.++++++.+.+.+..+.+|-. .+. ....-+.. .+++.|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~-~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSP-LFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCH-HHHHHHHHCCCeEEE
Confidence 24777888888888888888764 221 11111222 489999999998653
No 36
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.74 E-value=6.7 Score=34.06 Aligned_cols=107 Identities=18% Similarity=0.065 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-hhHHHHHHHHHHHcC-cccEEEecCccHHHHHHHHHHHHhcCC
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-~~~~~~~L~~L~~~G-~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
+.++.+...+-++. |.++|+++|++-..-.+...+ ..+.++.++++++.+ .++...++.-..+.++.+.+.
T Consensus 14 ~~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~------ 86 (265)
T cd03174 14 ATFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA------ 86 (265)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC------
Confidence 34566655555554 678898888877665442212 356788888888887 566666665445555555442
Q ss_pred CEeEEcccCCccC--------CCcch-----hhHHHHHHHcCCeEEEcc
Q 024322 218 PLASNQVNYSLIY--------RKPEE-----NGVKAACDELGITLIAYC 253 (269)
Q Consensus 218 ~~~~~q~~~n~~~--------~~~~~-----~~l~~~~~~~gi~via~s 253 (269)
.++.+++.+..-+ +..+. ...++.++++|+.+...-
T Consensus 87 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 87 GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 2444444443321 11100 146778888887766554
No 37
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=82.88 E-value=6.4 Score=37.20 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=81.1
Q ss_pred HHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 024322 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (269)
Q Consensus 77 ~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~ 156 (269)
..+.+..++..+..-=|.- .|+...-++++.|.+.+.+.|...+ ++ +|-|.- ..-+..-+.+.+-....
T Consensus 59 Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~-----~d-IiFts~----ATEs~Nlvl~~v~~~~~ 127 (428)
T KOG1549|consen 59 VLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADP-----SD-IVFTSG----ATESNNLVLKGVARFFG 127 (428)
T ss_pred HHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCC-----Cc-EEEeCC----chHHHHHHHHHhhcccc
Confidence 3344444444444322221 3444322223344555666665443 34 444444 12233334444444444
Q ss_pred HhCCCccceEEeecCCCCChhHHHHHHHHHHHcCc-ccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcch
Q 024322 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE 235 (269)
Q Consensus 157 ~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~-ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~ 235 (269)
. +++. -++++|. ...-+....+.|+++|. |+++.+.+-....++.+.+..+...--+.+.-+...+....+.+
T Consensus 128 ~-~~~k-~iitl~~----eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~ 201 (428)
T KOG1549|consen 128 D-KTKK-HIITLQT----EHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVK 201 (428)
T ss_pred c-cccc-eEEEecc----cCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHH
Confidence 4 4432 3555553 22446677778888885 67777775433334444333222211122222333333333333
Q ss_pred hhHHHHHHHcCCeEEEcccccCccc
Q 024322 236 NGVKAACDELGITLIAYCPIAQGEL 260 (269)
Q Consensus 236 ~~l~~~~~~~gi~via~spl~~G~L 260 (269)
++...|++.||.+++=...+-|..
T Consensus 202 -EI~~icr~~~v~v~~DaAQavG~i 225 (428)
T KOG1549|consen 202 -EIVKICREEGVQVHVDAAQAVGKI 225 (428)
T ss_pred -HHHHHhCcCCcEEEeehhhhcCCc
Confidence 488899999998887766665543
No 38
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.14 E-value=7.5 Score=36.45 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~s 154 (269)
-....++++|++.|++++||+..+.. ...+....+ +..+.+..-+|.. ...+--...+.+++-
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~-------~Agit~v~~~G~d-PGi~nv~a~~a~~~~ 141 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAK-------KAGITAVLGCGFD-PGITNVLAAYAAKEL 141 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHH-------HcCeEEEcccCcC-cchHHHHHHHHHHHh
Confidence 45558999999999999999976654 333333333 3456666666531 233333444444444
Q ss_pred HHHhCCCccceEEeecCCC
Q 024322 155 LFRLGLSSVELYQLHWAGI 173 (269)
Q Consensus 155 L~~L~~d~iDll~lH~p~~ 173 (269)
.+ .+++||+|..+-|+.
T Consensus 142 ~~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 142 FD--EIESIDIYVGGLGEH 158 (389)
T ss_pred hc--cccEEEEEEecCCCC
Confidence 44 588999999998766
No 39
>PRK05588 histidinol-phosphatase; Provisional
Probab=82.07 E-value=33 Score=29.79 Aligned_cols=169 Identities=10% Similarity=0.103 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCc---hHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAIN---SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~---se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
....+.+++|.+.|+..+ .+++..-...+...+ -+..+ +.+++.. ..+|++.--++ +.++ ....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~-----~~~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELG-----MEKD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEec-----ccCC-CHHHH
Confidence 346678999999999988 776632110000000 01222 2233332 24555555553 2222 35566
Q ss_pred HHHHHHhCCCccceEEeecCCCC-----------Chh----HHHHHHHHHHH-cCcccEEE---ec----C---------
Q 024322 152 KDSLFRLGLSSVELYQLHWAGIW-----------GNE----GFIDGLGDAVE-QGLVKAVG---VS----N--------- 199 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~~-----------~~~----~~~~~L~~L~~-~G~ir~iG---vS----~--------- 199 (269)
++.|++...||+ +.-+|+.+.. +.+ ..++.+.++.+ .+++.-|| +- .
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~ 162 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYD 162 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHH
Confidence 778888887877 7888984321 222 34466777776 46555444 11 0
Q ss_pred ccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccccc
Q 024322 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~ 256 (269)
+-...++++++.+.+.+..+.+|--.+...........+++.|++.|+.+++.++-+
T Consensus 163 ~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDA 219 (255)
T PRK05588 163 EFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGSDA 219 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEECCC
Confidence 113566788888888888788876332211111111248999999999876665544
No 40
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=81.39 E-value=44 Score=30.67 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCC-CCC-chHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASF-GAI-NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~-~~~-~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.++..+.+..+.+.|++.|=.--....+..+ +.. ..+.-.=+++++.. ..++-|..=.. ..++.+. .
T Consensus 124 ~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~----g~~~~l~vDaN---~~~~~~~----A 192 (352)
T cd03325 124 PSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAV----GPDIDIGVDFH---GRVSKPM----A 192 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhh----CCCCEEEEECC---CCCCHHH----H
Confidence 3556667777889999987652211100000 000 00222333444322 12333322221 2244433 2
Q ss_pred HHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccC
Q 024322 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (269)
.+.++.|. .+++.++..|-. .+-++.+.+|+++.-+. +.|=|.++...+..+++. --++++|.....+-
T Consensus 193 ~~~~~~l~--~~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~G 262 (352)
T cd03325 193 KDLAKELE--PYRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAG 262 (352)
T ss_pred HHHHHhcc--ccCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccC
Confidence 33333442 345556665542 23478888888885554 666777788888888653 24788888765543
Q ss_pred CCcchhhHHHHHHHcCCeEEEcc
Q 024322 231 RKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~via~s 253 (269)
.-.....+.+.|+++|+.++.++
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 22222258999999999999776
No 41
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=81.18 E-value=36 Score=31.15 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEcccccCC----------------CCCCCCCchHHHHHHHHHhccCCCCCCcEEEEec
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATK 134 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~----------------g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK 134 (269)
.++.+...++.++|-+.|+-+|=|--.+.. |+. .-..++-. +.+. .+.++++|=
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~----~~~plik~-iA~~-----~kPiIlSTG 155 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEI----NDLPLIKY-IAKK-----GKPIILSTG 155 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccc----cChHHHHH-HHhc-----CCCEEEEcc
Confidence 456688888999999999998876433321 100 00122222 2222 358888887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--hhH-HHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 135 FAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEG-FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 135 ~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~--~~~-~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
+ .+-+.++++++...++=. .|+.++|+...+| .++ -+..|..|++.= ---||+|.|+...+.-+..+
T Consensus 156 m------a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 156 M------ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred c------ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 6 456677888776655533 3999999876544 222 355565555553 45699999988766665554
Q ss_pred H
Q 024322 212 L 212 (269)
Q Consensus 212 ~ 212 (269)
+
T Consensus 226 A 226 (347)
T COG2089 226 A 226 (347)
T ss_pred H
Confidence 3
No 42
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=80.52 E-value=28 Score=31.93 Aligned_cols=153 Identities=12% Similarity=0.019 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
.++..+.+..+++.|++.|=.--...+-. .+.-.=+++++.. ..++.|..-.. ..++.+...+.+++
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~------~d~~~v~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~~ 208 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTAD------EDLAVVRSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQA 208 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChH------hHHHHHHHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHHH
Confidence 35556666777788887553211000100 0222233444332 13444443331 33555543333322
Q ss_pred HHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcc-cEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCC
Q 024322 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (269)
|+.+ ++.++..|-. .+-++.+.+|++.--| -..|=+.++...++++++. -.++++|+..+.+-.-
T Consensus 209 -l~~~-----~i~~iEeP~~---~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGi 274 (355)
T cd03321 209 -LDQE-----GLTWIEEPTL---QHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGV 274 (355)
T ss_pred -HHcC-----CCCEEECCCC---CcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCH
Confidence 2333 4555665543 2336677777776433 3566666788888888764 3488888877665432
Q ss_pred cchhhHHHHHHHcCCeEEEcc
Q 024322 233 PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~s 253 (269)
.+-..+.+.|+++|+.++.+.
T Consensus 275 t~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 275 TGWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHHHHHcCCeecccc
Confidence 222258999999999987654
No 43
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=80.39 E-value=52 Score=30.91 Aligned_cols=167 Identities=17% Similarity=0.232 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERK-QRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~-~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
.++.+.+..|++.|- .+.|+.. -|...|.+.+.+.+.+.. ..-..++|||++-+ ..++|-
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps--~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC------------~qAIe~ 141 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPS--VGILPARRAVAEYLNRDLPNKLTADDVVLTSGC------------SQAIEL 141 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCc--cccHHHHHHHHHHhhcCCCCccCcCceEEeccc------------hHHHHH
Confidence 677778888888875 3456552 255677888888876543 22247899999877 444554
Q ss_pred HHHHhCCCccceEEeecCCC-------------------CCh---hHHHHHHHHHHHcCcccEEEec-------CccHHH
Q 024322 154 SLFRLGLSSVELYQLHWAGI-------------------WGN---EGFIDGLGDAVEQGLVKAVGVS-------NYSEKR 204 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~-------------------~~~---~~~~~~L~~L~~~G~ir~iGvS-------~~~~~~ 204 (269)
.+..|-.-.-.+| +-+|.. .+. +=-++.++.|.++.-+--+=+- -|+.++
T Consensus 142 ~i~~LA~p~aNIL-lPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~H 220 (447)
T KOG0259|consen 142 AISSLANPGANIL-LPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDH 220 (447)
T ss_pred HHHHhcCCCCcee-cCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHH
Confidence 4444432222222 222322 000 1125678888888654433322 256788
Q ss_pred HHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHH-HcCCeEEEcccccCccccccc
Q 024322 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD-ELGITLIAYCPIAQGELLLFF 264 (269)
Q Consensus 205 i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~-~~gi~via~spl~~G~L~~~~ 264 (269)
++++++.|++.++.+..-.+--+.+..+.. .++..+ .--++|++-+.+..|.+..-|
T Consensus 221 L~kiae~A~klgi~vIaDEVY~~~vfg~~p---fvpmg~fssiVPVitlggisKrW~VPGW 278 (447)
T KOG0259|consen 221 LKKIAETAKKLGIMVIADEVYGHTVFGDKP---FVPMGKFSSIVPVITLGGISKRWIVPGW 278 (447)
T ss_pred HHHHHHHHHHhCCeEEehhhcceeecCCCC---ccchhhccccCceEeecccccccccCCc
Confidence 888888888888877666665554444332 233322 235778887777777776544
No 44
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=80.20 E-value=7.1 Score=33.40 Aligned_cols=89 Identities=11% Similarity=0.008 Sum_probs=58.0
Q ss_pred cceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHH
Q 024322 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (269)
.++.++..|-+. +-++.+.+|++...+. ..+=|-++.+.+.++++. -.++++|+..+..-.-.+-..+.++
T Consensus 120 ~~i~~iEeP~~~---~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCAP---DDLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCCc---cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 566667666432 2366777788877665 444555567777666543 2478888877665332222258899
Q ss_pred HHHcCCeEEEcccccCcc
Q 024322 242 CDELGITLIAYCPIAQGE 259 (269)
Q Consensus 242 ~~~~gi~via~spl~~G~ 259 (269)
|+++|+.++..+.+..|.
T Consensus 192 a~~~gi~~~~~~~~~s~i 209 (229)
T cd00308 192 AEAFGIRVMVHGTLESSI 209 (229)
T ss_pred HHHcCCEEeecCCCCCHH
Confidence 999999999998766543
No 45
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=79.69 E-value=10 Score=31.94 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~Dt 94 (269)
.+.+++.++++.+++.|++..|.
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i 31 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIEL 31 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHH
Confidence 35689999999999999977664
No 46
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=79.35 E-value=37 Score=28.96 Aligned_cols=127 Identities=12% Similarity=0.123 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.+.++..++++.-.+.||..|+.....-... -.+.+.+..+..+ ..++...+. ...+.++..+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~~~~v~~~~~~~~----~~~~~~~~~-------~~~~~i~~~~ 73 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASED------DFEQVRRLREALP----NARLQALCR-------ANEEDIERAV 73 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHH------HHHHHHHHHHHHH----SSEEEEEEE-------SCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHH------HHHHhhhhhhhhc----ccccceeee-------ehHHHHHHHH
Confidence 5668888999998899999999982222211 1344555555444 223332222 3455566666
Q ss_pred HHHHHHhCCCccceEEeecCCC------CC----hhHHHHHHHHHHHcCcccEEEecC---ccHHHHHHHHHHHHhcC
Q 024322 152 KDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~------~~----~~~~~~~L~~L~~~G~ir~iGvS~---~~~~~i~~~~~~~~~~~ 216 (269)
+.. ...+.|.+.++.--++.. .+ .+.+.+.++.+++.|.-..+++-. ++++.+.++.+.+...|
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g 150 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG 150 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC
Confidence 543 467777776554322200 11 344555666777788777777643 45666666666555544
No 47
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.34 E-value=43 Score=29.49 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=59.9
Q ss_pred HHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCC-------CCCHHHHHHHH
Q 024322 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-------RLGRQSVLAAL 151 (269)
Q Consensus 79 ~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~-------~~~~~~v~~~v 151 (269)
++++.|++.|...+..-..... ...+-..++++. -.+++...-+.... .--.+.+.+.+
T Consensus 87 ~v~e~al~~G~~iINdisg~~~---------~~~~~~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~ 152 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSD---------DPAMLEVAAEYG-----APLVLMHMRGTPKTMQENPYYEDVVDEVLSFL 152 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCC---------ChHHHHHHHHcC-----CCEEEECCCCCCcccccCCCcccHHHHHHHHH
Confidence 3678888889888875433221 134456666654 56777654332110 00123344444
Q ss_pred HHH---HHHhCCC----ccceEEeecCCC-CChhHHHHHHHHHHHcCcccEEEecCcc
Q 024322 152 KDS---LFRLGLS----SVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 152 ~~s---L~~L~~d----~iDll~lH~p~~-~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (269)
++. +++.|++ ++|-..- .... ....++++.+..+++.|.=-.+|+||-+
T Consensus 153 ~~~i~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 153 EARLEAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 433 4455776 4554221 1000 1145678888888988887799999854
No 48
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=79.12 E-value=30 Score=31.92 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=88.6
Q ss_pred ccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCC---CCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 024322 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (269)
Q Consensus 49 ~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~G---vn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~ 125 (269)
..+|--|.++-. +|.......+.++..+++....+.- +-.+|..+..+.. ...+-+.+. .
T Consensus 28 ~~~C~RC~~l~h---y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--------~~~l~~~~~--~---- 90 (360)
T TIGR03597 28 EVYCQRCFRLKH---YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--------IPELKRFVG--G---- 90 (360)
T ss_pred Ceeecchhhhhc---cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--------cHHHHHHhC--C----
Confidence 456666665532 3433334456678888777665432 2366765444331 122222222 1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHH-
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR- 204 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~- 204 (269)
..-++|.+|+-..+...+.+.+.+-+.+.++.++....|++.+-.-.....++.++.|.++.+.+.|-.+|.+|..-..
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 3578999999654444456667776767777777654566666554446688889999888777789999999985544
Q ss_pred HHHHHH
Q 024322 205 LRNAYE 210 (269)
Q Consensus 205 i~~~~~ 210 (269)
+..++.
T Consensus 171 iN~l~~ 176 (360)
T TIGR03597 171 INKLLK 176 (360)
T ss_pred HHHHHh
Confidence 444443
No 49
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=75.60 E-value=27 Score=32.92 Aligned_cols=110 Identities=13% Similarity=-0.008 Sum_probs=59.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCCCCC-----hhHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~-~d~iDll~lH~p~~~~-----~~~~~~~L 183 (269)
|+.+-+++++...+.+.+-++|.|=+. ...--+.++..+++.-++.. --.+.++.++.|+... .+.++++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~---~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al 142 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCL---TETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAI 142 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcc---hhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHH
Confidence 888888888776543344566666664 23333344444444433321 0136688888887632 33344444
Q ss_pred HH-H------HHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEE
Q 024322 184 GD-A------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 184 ~~-L------~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (269)
.+ + ++.++|--||-++.+...++++.+..+..|+++.++
T Consensus 143 ~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 143 IEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred HHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 32 2 234567778766653333444444455667665543
No 50
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=74.89 E-value=13 Score=31.95 Aligned_cols=120 Identities=7% Similarity=-0.028 Sum_probs=62.6
Q ss_pred CchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC-CCCCCHHHH
Q 024322 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGRQSV 147 (269)
Q Consensus 69 ~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~-~~~~~~~~v 147 (269)
.++.+.|+..++++.|.++||+.+=..++|-+|. ...+.+.+.+.+.+.+..- ++.-+--|+-+- .-..+.+.+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~---y~n~~~~v~~~~~~ln~~~--~~~aidl~v~pGQEIrIt~~vl 88 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGR---YENPIEKVKEKANQLNEIL--KKEAIDLKVLPGQEIRITGDVL 88 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCc---cCChHHHHHHHHHHHHHHH--HhhcCCceeccCceEEEchHHH
Confidence 4556789999999999999999777666666543 2234555555554433110 111111111110 011222223
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEE
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~i 195 (269)
..-.+..+--++ | =+.+++..|-......+-+.+-+|+-.|-+--|
T Consensus 89 ~~l~~g~I~tin-d-skYlLIEF~~~~v~~ya~~lf~elq~kGi~PII 134 (254)
T COG4464 89 DDLDKGIILTIN-D-SKYLLIEFPMNHVPRYADQLFFELQSKGIIPII 134 (254)
T ss_pred HHHhcCcccccc-c-cceEEEEccCCcchhhHHHHHHHHHHCCceeee
Confidence 333333333333 1 255666666544456666777777777765544
No 51
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=74.82 E-value=20 Score=33.88 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=68.7
Q ss_pred cccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCC
Q 024322 48 VTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEV 127 (269)
Q Consensus 48 v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~ 127 (269)
|-+|.+|...|.... -+.-....+.+++.+.+..+.+.|+.-+-.-=.||-
T Consensus 148 vNRiSlGVQsf~~~~--lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl--------------------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEV--LKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL--------------------------- 198 (416)
T ss_pred CCEEEeccccCCHHH--HHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC---------------------------
Confidence 447888877663220 000001123466777777777777765554455664
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEe-ecCCC-----------CC-hh---HHHHHH-HHHHHcC
Q 024322 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI-----------WG-NE---GFIDGL-GDAVEQG 190 (269)
Q Consensus 128 ~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~l-H~p~~-----------~~-~~---~~~~~L-~~L~~~G 190 (269)
...+.+.+.+.+++.+ .|+.|+|.+|.+ |-|.. .+ .+ +.++.. +.|.+.|
T Consensus 199 ------------P~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~G 265 (416)
T COG0635 199 ------------PGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAG 265 (416)
T ss_pred ------------CCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCC
Confidence 4567777888887766 467999999977 44432 11 12 344444 5566667
Q ss_pred cccEEEecCccH
Q 024322 191 LVKAVGVSNYSE 202 (269)
Q Consensus 191 ~ir~iGvS~~~~ 202 (269)
. +.+|+|||..
T Consensus 266 y-~~yeisnfa~ 276 (416)
T COG0635 266 Y-RQYEISNFAK 276 (416)
T ss_pred C-cEEeechhcC
Confidence 7 9999999965
No 52
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=73.35 E-value=64 Score=30.76 Aligned_cols=29 Identities=28% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEee
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH 169 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH 169 (269)
...+.+.+++.++..++ |+.++|+++.+.
T Consensus 225 PgqT~e~~~~~l~~~~~-l~~~~is~y~L~ 253 (449)
T PRK09058 225 PGQTPEIWQQDLAIVRD-LGLDGVDLYALN 253 (449)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 45688888888887664 899999999875
No 53
>PRK07534 methionine synthase I; Validated
Probab=73.14 E-value=76 Score=29.12 Aligned_cols=153 Identities=14% Similarity=0.038 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCC----chHHHHHHHHH---hccCCCCCCcEEEEecCCCCCC-----
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI----NSETLLGRFIK---ERKQRDPEVEVTVATKFAALPW----- 140 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~----~se~~lG~al~---~~~~~~~R~~l~I~tK~~~~~~----- 140 (269)
.++..+++=+.++++|-+.+-|.....+...-..+ ..+++.-.+.+ +..... ..+++|+.-++++..
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~-~~~~~VaGsIGP~g~~l~~~ 121 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKA-GRKVIVAGSVGPTGEIMEPM 121 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEecCCCccccCCC
Confidence 35788888888899999999875543330000000 01222222222 111100 236888888987422
Q ss_pred -CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCc------cHHHHHHHHHHHH
Q 024322 141 -RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY------SEKRLRNAYEKLK 213 (269)
Q Consensus 141 -~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~------~~~~i~~~~~~~~ 213 (269)
..+.+.........++.|--.-+|++++--. ....|+..+++.+++.++--.+.++-. +...++++++..+
T Consensus 122 ~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~ 199 (336)
T PRK07534 122 GALTHALAVEAFHEQAEGLKAGGADVLWVETI--SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVE 199 (336)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHH
Confidence 2456778888888888884456999999853 235666666666666665444555421 1233444444443
Q ss_pred hcCCCEeEEcccCCc
Q 024322 214 KRGIPLASNQVNYSL 228 (269)
Q Consensus 214 ~~~~~~~~~q~~~n~ 228 (269)
..+..++++-+++..
T Consensus 200 ~~~~~~~avGvNC~~ 214 (336)
T PRK07534 200 KLGEPPLAFGANCGV 214 (336)
T ss_pred hcCCCceEEEecCCC
Confidence 333346777777763
No 54
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=72.77 E-value=16 Score=33.71 Aligned_cols=85 Identities=11% Similarity=-0.053 Sum_probs=60.0
Q ss_pred cceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHH
Q 024322 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (269)
+++.++..|-. .+-++.+.+|++...+. ..|=|-++...++.+++. .-++++|+.....-.-.+-..+.+.
T Consensus 189 ~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit~~~~ia~~ 260 (361)
T cd03322 189 YRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGITPARKIADL 260 (361)
T ss_pred cCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 46667776643 23477788888887665 777777888888888764 3488888887654322222258999
Q ss_pred HHHcCCeEEEcccc
Q 024322 242 CDELGITLIAYCPI 255 (269)
Q Consensus 242 ~~~~gi~via~spl 255 (269)
|+++|+.+..++..
T Consensus 261 A~~~gi~~~~h~~~ 274 (361)
T cd03322 261 ASLYGVRTGWHGPT 274 (361)
T ss_pred HHHcCCeeeccCCC
Confidence 99999999877543
No 55
>PRK07329 hypothetical protein; Provisional
Probab=72.64 E-value=64 Score=27.99 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC----------CChhH----HHHHHHHHHHcC-cccEEEecC----------cc-
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGI----------WGNEG----FIDGLGDAVEQG-LVKAVGVSN----------YS- 201 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~----------~~~~~----~~~~L~~L~~~G-~ir~iGvS~----------~~- 201 (269)
+..+++.|.+...||+ +.-+|+.+. .+.++ .++.+.++.+.+ .+..+|=-. .+
T Consensus 82 ~~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~ 160 (246)
T PRK07329 82 EDDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEEL 160 (246)
T ss_pred HHHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcCh
Confidence 4556666777778888 888898532 12233 347788888876 666555111 11
Q ss_pred ---HHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccccc
Q 024322 202 ---EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 202 ---~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~ 256 (269)
.+.++++++.+.+.+..+.+|-..+.-.........+++.|++.|+..++.+.-+
T Consensus 161 ~~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDA 218 (246)
T PRK07329 161 KAFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDA 218 (246)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCC
Confidence 3556777788888888788876544211111111248999999998766655443
No 56
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=72.55 E-value=43 Score=31.91 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------hhHHHHH
Q 024322 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R-~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~------~~~~~~~ 182 (269)
++.+-++|.+..+++++ +-++|.+=+. ...--+.++..+++.-++++ +.++.+|.|+... ...+.++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~---~~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCP---TGLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCCh---HHHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 88889999877665544 5567776664 23334455555555545554 7899999987632 2222333
Q ss_pred -HHHHH--------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 183 -L~~L~--------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
++.+. +.++|--||-.++ ...++++.+..+..|+++..
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~~ 222 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVVA 222 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEEE
Confidence 33443 2466778885554 23344444445566766543
No 57
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=72.55 E-value=70 Score=29.36 Aligned_cols=92 Identities=9% Similarity=-0.020 Sum_probs=52.4
Q ss_pred CcEEEEecCCCCCC---CCCHHHHHHHHHHHHHHhCCCccceE-Eeec-CCC-----CChhHHHHHHHHHHHcCcccEEE
Q 024322 127 VEVTVATKFAALPW---RLGRQSVLAALKDSLFRLGLSSVELY-QLHW-AGI-----WGNEGFIDGLGDAVEQGLVKAVG 196 (269)
Q Consensus 127 ~~l~I~tK~~~~~~---~~~~~~v~~~v~~sL~~L~~d~iDll-~lH~-p~~-----~~~~~~~~~L~~L~~~G~ir~iG 196 (269)
.++.|..|++..+. ..+.+...+ +-+.|+.+|+|+|++- ..|. +.. .+.........++++.=.+.-++
T Consensus 203 ~d~~v~iRi~~~D~~~~g~~~~e~~~-i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 203 EDFIIIYRLSMLDLVEGGSTWEEVVA-LAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred CCceEEEEecccccCCCCCCHHHHHH-HHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE
Confidence 57788888875322 245544433 3345678888888872 2232 111 11112344556777776677777
Q ss_pred ecCc-cHHHHHHHHHHHHhcCCCEeEEcc
Q 024322 197 VSNY-SEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 197 vS~~-~~~~i~~~~~~~~~~~~~~~~~q~ 224 (269)
.-++ +++.++++++. ...+++++
T Consensus 282 ~G~i~~~~~a~~~i~~-----g~~D~V~~ 305 (353)
T cd02930 282 SNRINTPEVAERLLAD-----GDADMVSM 305 (353)
T ss_pred cCCCCCHHHHHHHHHC-----CCCChhHh
Confidence 7664 77888888764 23555544
No 58
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=72.51 E-value=23 Score=30.20 Aligned_cols=82 Identities=18% Similarity=0.102 Sum_probs=52.5
Q ss_pred HHHhCCCccceEEee-cCCCCChhHHHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEeEEcccCCccCCC
Q 024322 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 155 L~~L~~d~iDll~lH-~p~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (269)
...+|.||+=+++.- .|...+.+.+-+....+.+ ++.+||. |.+.+.+.++++. ..++++|++-.
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~----- 84 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---VKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD----- 84 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---CCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC-----
Confidence 356788998877765 5655555544444333333 8899988 5588888888776 67999998764
Q ss_pred cchhhHHHHHHHcC-CeEE
Q 024322 233 PEENGVKAACDELG-ITLI 250 (269)
Q Consensus 233 ~~~~~l~~~~~~~g-i~vi 250 (269)
+..+.++..++.. +.|+
T Consensus 85 -e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 -EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred -CCHHHHHHHHhhcCCceE
Confidence 1113555555543 4444
No 59
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=72.47 E-value=77 Score=29.68 Aligned_cols=82 Identities=11% Similarity=-0.030 Sum_probs=57.5
Q ss_pred ceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHH
Q 024322 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (269)
Q Consensus 164 Dll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~ 242 (269)
|+.++..|-. -++.|.+|++...+. +.|-|-++.++++++++. .-.+++|......-.-.+-..+.+.|
T Consensus 239 ~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~GGit~~~kia~~A 308 (395)
T cd03323 239 VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWGGMRGSVRVAQVC 308 (395)
T ss_pred CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccccccCHHHHHHHHHHH
Confidence 6667776643 477888888886655 666666777787777653 24888888776543222222589999
Q ss_pred HHcCCeEEEcccc
Q 024322 243 DELGITLIAYCPI 255 (269)
Q Consensus 243 ~~~gi~via~spl 255 (269)
+++||.+..++..
T Consensus 309 ~~~gi~~~~h~~~ 321 (395)
T cd03323 309 ETWGLGWGMHSNN 321 (395)
T ss_pred HHcCCeEEEecCc
Confidence 9999999988765
No 60
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.25 E-value=12 Score=31.89 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=44.8
Q ss_pred HHHHhCCCccceEEee-cCCCCChhHHHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEeEEcccC
Q 024322 154 SLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 154 sL~~L~~d~iDll~lH-~p~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (269)
....+|.|++=+++.. .|...+.+.+-+....+ .+.++.+||. |-+++.+.++.+. ..++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 3456999999987543 34434455443333333 2568899996 6788888888765 5789999875
No 61
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=72.14 E-value=67 Score=29.22 Aligned_cols=90 Identities=19% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHH
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i 205 (269)
++.+.++.|... +.-...+.+.+++..+++|. ++.+ ..|...+.+...+.++.+..+| +..|-++..+.+.+
T Consensus 23 ~~~i~~v~k~~~---~pf~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 23 AERIAFIPKLVG---VGFFTSGGNGAKEAGKELGV---DVTY-DGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred CcEEEEEECCCC---CHHHHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 578888888743 23355688899999999984 4443 3444344566678899999876 88899988887777
Q ss_pred HHHHHHHHhcCCCEeEEc
Q 024322 206 RNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 206 ~~~~~~~~~~~~~~~~~q 223 (269)
...++.+...++++..+-
T Consensus 95 ~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 95 CPALKRAMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHHCCCeEEEeC
Confidence 777777777777655543
No 62
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=72.08 E-value=10 Score=33.70 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=60.2
Q ss_pred HHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecC---ccHHHHHHHHHHHHhcCCCEeEEcccCCccCC
Q 024322 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 155 L~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~---~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (269)
+++...+..|++.+..|--.. ..++ ..++..-. .|=|+. +....++++++..+..+++..++-+.||+.+.
T Consensus 156 ~kk~a~E~~~~~IIDsaaG~g-CpVi---~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s 229 (284)
T COG1149 156 LKKHAKELADLLIIDSAAGTG-CPVI---ASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS 229 (284)
T ss_pred HHHhhhhhcceeEEecCCCCC-ChHH---HhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch
Confidence 333333348888888764311 1222 22333333 333432 34566777777788888999999999976554
Q ss_pred CcchhhHHHHHHHcCCeEEEcccccC
Q 024322 232 KPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 232 ~~~~~~l~~~~~~~gi~via~spl~~ 257 (269)
++.++|++.|+.+++.-|+..
T Consensus 230 -----~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 230 -----EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred -----HHHHHHHHcCCCeeEECCcch
Confidence 388999999999999888753
No 63
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=71.62 E-value=53 Score=30.67 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=62.4
Q ss_pred EEeecCCC------------CChhHHHHHHHHHHHc-Cc---ccEEEec--CccHHHHHHHHHHHHhcC----CCEeEEc
Q 024322 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRG----IPLASNQ 223 (269)
Q Consensus 166 l~lH~p~~------------~~~~~~~~~L~~L~~~-G~---ir~iGvS--~~~~~~i~~~~~~~~~~~----~~~~~~q 223 (269)
+.||.|+. ++.+++++++.+..++ |+ +.++=+. |-+.++.+++.+.++... ++..+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 57898865 4578899998887654 42 1222233 447888888888765320 1679999
Q ss_pred ccCCccCCCcc----h---hhHHHHHHHcCCeEEEcccccC
Q 024322 224 VNYSLIYRKPE----E---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 224 ~~~n~~~~~~~----~---~~l~~~~~~~gi~via~spl~~ 257 (269)
++||+...... . ....+..+++||.+......+.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 99999654221 1 1467778899999999987754
No 64
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.18 E-value=95 Score=29.36 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
+++..+....+++.|++.|=.-- |.... ...-.=+++++.. -.++.|.-=.. ..++++...+
T Consensus 197 ~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~-----~d~~~v~avRe~v----G~~~~L~vDaN---~~w~~~~A~~---- 258 (415)
T cd03324 197 DEKLRRLCKEALAQGFTHFKLKV--GADLE-----DDIRRCRLAREVI----GPDNKLMIDAN---QRWDVPEAIE---- 258 (415)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC--CCCHH-----HHHHHHHHHHHhc----CCCCeEEEECC---CCCCHHHHHH----
Confidence 45566677777889999775321 11000 0112223333321 12333322221 2345544333
Q ss_pred HHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC----cccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCcc
Q 024322 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G----~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (269)
.+++| +-+++.++..|-. .+-++.+.+|++.- .--+.|=+-++...++++++. ...+++|....-.
T Consensus 259 ~~~~L--~~~~l~~iEEP~~---~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~ 328 (415)
T cd03324 259 WVKQL--AEFKPWWIEEPTS---PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRL 328 (415)
T ss_pred HHHHh--hccCCCEEECCCC---CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCcccc
Confidence 23333 2345666776643 23456666676653 333556666788888888654 3588888877664
Q ss_pred CCCcchhhHHHHHHHcCCeEEEcc
Q 024322 230 YRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~via~s 253 (269)
-.-.+-..+.+.|+++|+.+..++
T Consensus 329 GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 329 GGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEcC
Confidence 422222258999999999998874
No 65
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=70.53 E-value=14 Score=34.05 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccccc
Q 024322 179 FIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 179 ~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~ 256 (269)
-++.+.+|+++..+. ++|=+-++...+.++++. --++++|+.....-.-..-..+..+|+++|+.++..+...
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~ 300 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLE 300 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcch
Confidence 467777887775555 666666778888888664 2367777765554322222258999999999998654333
No 66
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=70.37 E-value=23 Score=29.17 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCc----cceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 147 VLAALKDSLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~----iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
.+..++..++++|++. ++.+.-.+.......++.+.|+.|++.| ++-.-+||.+.+.++..++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3556666777777652 1112111112234568889999999988 55566888777777766543
No 67
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=69.71 E-value=43 Score=31.71 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred cccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC-ccceEEeecCC
Q 024322 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-SVELYQLHWAG 172 (269)
Q Consensus 94 tA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d-~iDll~lH~p~ 172 (269)
..-.||. ++.+-++|.+..++.+.+=++|.|=+- ...--+.++..+++.-++.... .+.++.++.|+
T Consensus 63 ~d~V~Gg---------~~~L~~ai~~~~~~~~p~~I~v~ttC~---~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 130 (435)
T cd01974 63 DAAVFGG---------QNNLIDGLKNAYAVYKPDMIAVSTTCM---AEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPS 130 (435)
T ss_pred CceEECc---------HHHHHHHHHHHHHhcCCCEEEEeCCch---HhhhhccHHHHHHHHHHhccCCCCCeEEEecCCC
Confidence 3456887 888999998776554345567766663 2333444555555444443211 47899999887
Q ss_pred CCC-----hhHHHHHHH-HHHH-------cCcccEEEecCccHHHHHHHHHHHHhcCCCEe
Q 024322 173 IWG-----NEGFIDGLG-DAVE-------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 173 ~~~-----~~~~~~~L~-~L~~-------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (269)
... .+.++++|. .+.+ .+.|--||-.+...+.++++.+..+..|+++.
T Consensus 131 f~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 131 FVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred CccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 632 334444443 2322 23354554222111224444444556677664
No 68
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=69.42 E-value=76 Score=27.60 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=49.4
Q ss_pred HHHHhCCCccceEEeecCCCCC--hhHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEeEEcccCCccC
Q 024322 154 SLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~~~--~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (269)
-|.++| +|.+.+|..+... ..--++.+.++++.-.+.-|...+. +.+.+.+++.. -..+.+.+---+..
T Consensus 163 ~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~-----g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 163 EVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK-----GKADAALAASVFHY 234 (254)
T ss_pred HHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc-----CCcceeeEhHHHhC
Confidence 345555 5666667644311 1223566677776666777766655 67788887654 12333333222222
Q ss_pred CCcchhhHHHHHHHcCCeE
Q 024322 231 RKPEENGVKAACDELGITL 249 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v 249 (269)
....-.++.+.|+++||.+
T Consensus 235 ~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 235 REITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 2222336899999999864
No 69
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=69.41 E-value=73 Score=27.36 Aligned_cols=145 Identities=9% Similarity=0.044 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~s 154 (269)
....+++..|.+.|+..+=.+++...... .......+++ =+|+...-+ ....++.+.+.++
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~------~~~~~~~~~~-------i~Il~GiEi----~~~~~~~~~~~~~-- 76 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE------SKPELEDLLG-------FEIFRGVEI----VASNPSKLRGLVG-- 76 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc------hhHHHHHhcC-------CcEEeeEEE----ecCCHHHHHHHHH--
Confidence 56778999999999998877766432100 1111112211 123333222 1233444333333
Q ss_pred HHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEeEEcccCCccCC
Q 024322 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 155 L~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (269)
+. .+.+|++.+| |. .+++ ...+.+.+.|.-||--.. ....-+.+++.+.+.++-+.+ +++.+..
T Consensus 77 --~~-~~~~d~v~v~-~~---~~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEI---n~s~~~~ 143 (237)
T PRK00912 77 --KF-RKKVDVLAVH-GG---DEKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEF---NLRDILK 143 (237)
T ss_pred --hc-cCcccEEEEe-CC---CHHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEE---EchHhhh
Confidence 32 1257888888 22 1222 235788888888886532 111223444555555655554 4443321
Q ss_pred Cc--------ch-hhHHHHHHHcCCeEEE
Q 024322 232 KP--------EE-NGVKAACDELGITLIA 251 (269)
Q Consensus 232 ~~--------~~-~~l~~~~~~~gi~via 251 (269)
.. .. ..++..|++.|+.++.
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 11 00 1589999999988874
No 70
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=69.03 E-value=78 Score=27.75 Aligned_cols=108 Identities=12% Similarity=0.028 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHH-HHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEe
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGL-GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L-~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (269)
.+++.+.+..++.++ -|.|+||+=. .|...+.++.+..+ ..+++.-. .-|.|-+++++.++++++.+. | ..-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G-~~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--G-KCV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--C-CcE
Confidence 556677777777765 4999999754 23333333333333 33332212 238888999999999987532 2 233
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCc
Q 024322 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 221 ~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G 258 (269)
+|=+.. ...+.....+++.++++|..++.+..-..|
T Consensus 96 INsIs~--~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 96 VNSINL--EDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EEeCCC--CCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 333332 211111124789999999999887654333
No 71
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=69.01 E-value=92 Score=28.38 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=56.7
Q ss_pred cceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHH
Q 024322 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (269)
+|+.++..|-. .+-++.+.+|+++..|. +.|=+.++...++++++. ...+++|+..+..-.-.+-..+.+.
T Consensus 197 ~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GGit~~~~i~~~ 268 (341)
T cd03327 197 YELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGGITELKKIAAL 268 (341)
T ss_pred cCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 45566665543 33467777888886665 667677788888888664 3488888877665332222258999
Q ss_pred HHHcCCeEEEcc
Q 024322 242 CDELGITLIAYC 253 (269)
Q Consensus 242 ~~~~gi~via~s 253 (269)
|+++|+.++.++
T Consensus 269 A~~~g~~~~~h~ 280 (341)
T cd03327 269 AEAYGVPVVPHA 280 (341)
T ss_pred HHHcCCeecccc
Confidence 999999988764
No 72
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=68.83 E-value=20 Score=33.64 Aligned_cols=85 Identities=9% Similarity=-0.079 Sum_probs=59.1
Q ss_pred cceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHH
Q 024322 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (269)
.++.+|..|-. .+-++.+.+|++.-.|. +.|=|-++...++++++. .-++++|+...-.-.-.....+.++
T Consensus 232 ~~l~~iEeP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~l 303 (404)
T PRK15072 232 YRLFWLEDPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADF 303 (404)
T ss_pred cCCcEEECCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHH
Confidence 56777776643 23367788888886555 677777888888888764 3488888877654322222258999
Q ss_pred HHHcCCeEEEcccc
Q 024322 242 CDELGITLIAYCPI 255 (269)
Q Consensus 242 ~~~~gi~via~spl 255 (269)
|+.+|+.++.++..
T Consensus 304 A~~~gi~~~~h~~~ 317 (404)
T PRK15072 304 AALYQVRTGSHGPT 317 (404)
T ss_pred HHHcCCceeeccCc
Confidence 99999999987553
No 73
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=68.67 E-value=49 Score=27.74 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHCCCCEEEc
Q 024322 73 KMKAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~Dt 94 (269)
+.+.+.++++.+++.|+...|.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i 30 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI 30 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH
Confidence 4588889999999999765443
No 74
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=68.24 E-value=24 Score=30.80 Aligned_cols=168 Identities=10% Similarity=-0.016 Sum_probs=84.3
Q ss_pred ccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHC-CCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCC
Q 024322 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEV 127 (269)
Q Consensus 49 ~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~-Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~ 127 (269)
|+|-+||..+... +++..|+++ |-..+-.|----+.. ...-++-|-+.. +++
T Consensus 9 SRL~lGTgky~s~-----------------~~m~~ai~aSg~evvTvalRR~~~~-------~~~~~~~~~~~i---~~~ 61 (247)
T PF05690_consen 9 SRLILGTGKYPSP-----------------EVMREAIEASGAEVVTVALRRVNLG-------SKPGGDNILDYI---DRS 61 (247)
T ss_dssp -SEEEE-STSSSH-----------------HHHHHHHHHTT-SEEEEECCGSTTT-------S-TTCHHCCCCT---TCC
T ss_pred cceEEecCCCCCH-----------------HHHHHHHHHhCCcEEEEEEecccCC-------CCCCCccHHHHh---ccc
Confidence 7899999876443 356666644 666665542221100 000011121111 135
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChhHHHHHHHHHHHcCcccEEEecCccHHHH
Q 024322 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 128 ~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i 205 (269)
++.+.-... ..++.+.-.+..+-+.+-++++.|-|=.+..+.. .++.+++++-+.|+++|-+-.= -++-++-..
T Consensus 62 ~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-Y~~~D~v~a 137 (247)
T PF05690_consen 62 GYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-YCTDDPVLA 137 (247)
T ss_dssp TSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-EE-S-HHHH
T ss_pred CCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-cCCCCHHHH
Confidence 555444442 3577777777778888888999888777766655 4588999999999999965422 222244444
Q ss_pred HHHHHHHHhcCCCEeEEcccCCccCCCcc---hhhHHHHHHHcCCeEEEcc
Q 024322 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPE---ENGVKAACDELGITLIAYC 253 (269)
Q Consensus 206 ~~~~~~~~~~~~~~~~~q~~~n~~~~~~~---~~~l~~~~~~~gi~via~s 253 (269)
+++.+. --..++--=+|+-.... ..-+-..+++.+|+||.-.
T Consensus 138 krL~d~------GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 138 KRLEDA------GCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp HHHHHT------T-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred HHHHHC------CCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 444332 23333333333332111 0125555667788888644
No 75
>PRK05985 cytosine deaminase; Provisional
Probab=68.15 E-value=1e+02 Score=28.50 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHCCCCEE
Q 024322 75 KAAKAAFDTSLDNGITFF 92 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~ 92 (269)
..+...+..+++.|++++
T Consensus 98 ~~a~~~~~~~l~~G~t~v 115 (391)
T PRK05985 98 ERALALARAAAAAGTTAM 115 (391)
T ss_pred HHHHHHHHHHHhcCcceE
Confidence 557777999999999986
No 76
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=68.11 E-value=88 Score=27.78 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASF-GAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~-~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
..+.++..++++.+.+.|+..+.- .| |+.. +.+. .+++ +.+++.+ -.++.|+|.... + .
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l-~~iv-~~l~~~g----~~~v~i~TNG~l---------l-~ 98 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDL-IEII-RRIKDYG----IKDVSMTTNGIL---------L-E 98 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCH-HHHH-HHHHhCC----CceEEEEcCchH---------H-H
Confidence 456788899999999999987764 23 3211 1000 1222 2233322 136777776521 1 2
Q ss_pred HHHHHHHHhCCCccceEEeecCCC---------CChhHHHHHHHHHHHcCc----ccEEEecCccHHHHHHHHHHHHhcC
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~---------~~~~~~~~~L~~L~~~G~----ir~iGvS~~~~~~i~~~~~~~~~~~ 216 (269)
..-..|.+.|++.|- +-++.+++ ...+.+++.++.+++.|. |..+.+.+.+.+++.++++.+...+
T Consensus 99 ~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g 177 (302)
T TIGR02668 99 KLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGG 177 (302)
T ss_pred HHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 223345666665443 33444332 236789999999999984 2344555578889999999888776
Q ss_pred CCEeEEcccCCcc
Q 024322 217 IPLASNQVNYSLI 229 (269)
Q Consensus 217 ~~~~~~q~~~n~~ 229 (269)
+.+ .-++|.+.
T Consensus 178 ~~~--~~ie~~p~ 188 (302)
T TIGR02668 178 AIL--QLIELMPP 188 (302)
T ss_pred CEE--EEEEEeEC
Confidence 543 33444443
No 77
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=67.45 E-value=86 Score=29.60 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=67.4
Q ss_pred cccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCCCC
Q 024322 96 EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIW 174 (269)
Q Consensus 96 ~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~-~d~iDll~lH~p~~~ 174 (269)
-.||. |+.+-++|++...+++.+=++|.|=+. ...--+.+...+++.-++.. ...+.++.+|.|+..
T Consensus 61 ~VfGg---------~~~L~~~i~~~~~~~~p~~I~V~ttc~---~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~ 128 (417)
T cd01966 61 TILGG---------GENLEEALDTLAERAKPKVIGLLSTGL---TETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFE 128 (417)
T ss_pred EEECC---------HHHHHHHHHHHHHhcCCCEEEEECCCc---ccccccCHHHHHHHHHhhccccCCCeEEEecCCCCC
Confidence 36887 888888888776544355677777664 23334445555555444421 014778899999874
Q ss_pred C-----hhHHHHHHH-HH--------HHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 175 G-----NEGFIDGLG-DA--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 175 ~-----~~~~~~~L~-~L--------~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
. .+.++++|. .+ ++.++|--||-++.++..++++.+..+..|+++.+
T Consensus 129 g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 129 GSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 2 333333332 22 12455778875555566667776667777776644
No 78
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=66.88 E-value=20 Score=32.14 Aligned_cols=104 Identities=17% Similarity=0.075 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEe
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (269)
++.+. +..+-+.|.++|+++|++-.++.|...+ ..+.++.+..+.+...++...+. .+...++.+++. +....
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 44443 4456666999999999998776665432 33446677777655556666665 477777777653 33221
Q ss_pred EEcccCCcc------CCCcch-----hhHHHHHHHcCCeEEE
Q 024322 221 SNQVNYSLI------YRKPEE-----NGVKAACDELGITLIA 251 (269)
Q Consensus 221 ~~q~~~n~~------~~~~~~-----~~l~~~~~~~gi~via 251 (269)
.+-+..|.. ....++ ...+++++++|+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 111222211 111111 1489999999998863
No 79
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=66.72 E-value=87 Score=28.27 Aligned_cols=164 Identities=15% Similarity=0.249 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHCCCC-EEEcccccCCCCCCCCCchHHHHHHHHH---hccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn-~~DtA~~Yg~g~~~~~~~se~~lG~al~---~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
+...++...|.+.|+. .||.=+.+-. +..+--+.+ ..... +..++++--.- -.-+++.+.+.
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~~~~~~~~~~~~~~--~~~vg~tlQaY---L~~t~~~l~~l 157 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAILDLFLELMRKYNKG--WPNVGITLQAY---LKRTPDDLERL 157 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHHHHHHHHCCHHGTT----SEEEEEETT---BTTHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHHHHHHHHhhHhhCC--CCeEEEEEech---hhchHHHHHHH
Confidence 5677888999999998 6776544443 333222222 23322 45666666651 12345666666
Q ss_pred HHHHHHHhCCCccceEEee---------------cCCC--CC----hhHHHHHHHHHHHcCc-c--cEEEecCccHHHHH
Q 024322 151 LKDSLFRLGLSSVELYQLH---------------WAGI--WG----NEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRLR 206 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH---------------~p~~--~~----~~~~~~~L~~L~~~G~-i--r~iGvS~~~~~~i~ 206 (269)
++.+-++ |. .+-+=++- ++++ .+ .+.....+..+..++. - -+++|.+||...+.
T Consensus 158 ~~~a~~~-g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~ 235 (313)
T PF01619_consen 158 LELARRR-GF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIA 235 (313)
T ss_dssp HHHHHHT-TS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHH
T ss_pred HHHHHHc-CC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHH
Confidence 6655542 21 12222221 1111 11 3344666666655544 3 68999999999999
Q ss_pred HHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccccc
Q 024322 207 NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 207 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~ 256 (269)
.+.+.+++.++++.--+++|-.+..-.+ ++-....+.|..+.-|.|++
T Consensus 236 ~a~~l~~~~~~~~~~~~~efq~L~Gm~d--~l~~~L~~~g~~v~~YvP~G 283 (313)
T PF01619_consen 236 LALELAEELGIPPNDDRVEFQQLYGMAD--DLSRALAQAGYRVRKYVPYG 283 (313)
T ss_dssp HHHHHHHCTT-GG--GGEEEEEETTSSH--HHHHHHHHHTSEEEEEEEES
T ss_pred HHHHHHHHcCCCcccccEEeehhccCCH--HHHHHHHhCCCCEEEEEecC
Confidence 9999988888665223344443333223 47778888999999999986
No 80
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=66.54 E-value=1e+02 Score=27.96 Aligned_cols=137 Identities=18% Similarity=0.071 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHC-CCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~-Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
.+.++..++++..-+. |++.+--+ | |+. +-.+...+.+.++......-...+-|.|+.. -..+..+...
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilS---G-GDP--l~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~----v~~p~rit~e 188 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILT---G-GDP--LVLSPRRLGDIMARLAAIDHVKIVRFHTRVP----VADPARVTPA 188 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEe---C-CCc--ccCCHHHHHHHHHHHHhCCCccEEEEeCCCc----ccChhhcCHH
Confidence 4557777888776544 88744211 1 211 0011233444443332110023467788762 2334444445
Q ss_pred HHHHHHHhCCCccceEEeecCCC-CChhHHHHHHHHHHHcCcccEE------EecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 151 LKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAV------GVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~L~~~G~ir~i------GvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
+-+.|++.|.. ..+.+|.... .-.++++++++.|++.|..-.+ |+ |.+.+.+.++.+.+.+.|+.+-+
T Consensus 189 ll~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~pyy 263 (321)
T TIGR03822 189 LIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIKPYY 263 (321)
T ss_pred HHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCeeEE
Confidence 55566666742 3577787433 1257899999999999952211 32 56788899988887777765433
No 81
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=66.38 E-value=16 Score=35.24 Aligned_cols=91 Identities=9% Similarity=0.005 Sum_probs=61.5
Q ss_pred CCcEEEEecCCCCCCCCC-HHHH--------HHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEE
Q 024322 126 EVEVTVATKFAALPWRLG-RQSV--------LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG 196 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~-~~~v--------~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iG 196 (269)
+.++|+++=+|....... .-.+ +=.-.+.-+|+.+.|+|.+. .+.+++++..++.+++|+..+||
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~ldeal~~~~~a~~~~~~~SIg 230 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT------DSLDEALARAEEAKAEGKPISIG 230 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc------CCHHHHHHHHHHHHHcCCceEEE
Confidence 688999998875210000 0000 01113444788888998542 45799999999999999999999
Q ss_pred ecCccHHHHHHHHHHHHhcCCCEeEE--cccC
Q 024322 197 VSNYSEKRLRNAYEKLKKRGIPLASN--QVNY 226 (269)
Q Consensus 197 vS~~~~~~i~~~~~~~~~~~~~~~~~--q~~~ 226 (269)
+-..-.+.++++++. ++.|+++ |...
T Consensus 231 ~~GNaadv~~~l~~r----~i~pDlvtDQTSa 258 (545)
T TIGR01228 231 LLGNAAEVLPELLKR----GVVPDVVTDQTSA 258 (545)
T ss_pred eeccHHHHHHHHHHc----CCCCCCcCCCCcc
Confidence 999888888888653 5655554 6544
No 82
>PRK05414 urocanate hydratase; Provisional
Probab=66.23 E-value=17 Score=35.19 Aligned_cols=91 Identities=10% Similarity=-0.017 Sum_probs=61.6
Q ss_pred CCcEEEEecCCCCCCCC-CHHHH--------HHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEE
Q 024322 126 EVEVTVATKFAALPWRL-GRQSV--------LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG 196 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~-~~~~v--------~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iG 196 (269)
+.++|+++=+|...... ..-.+ +=.-.+.-+|+.+.|+|.+. .+.+++++..++.+++|+..+||
T Consensus 166 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~Ldeal~~~~~a~~~~~~~SIg 239 (556)
T PRK05414 166 AGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA------DDLDEALALAEEAKAAGEPLSIG 239 (556)
T ss_pred ceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc------CCHHHHHHHHHHHHHcCCceEEE
Confidence 68899999887521000 00000 11113445788889998542 45799999999999999999999
Q ss_pred ecCccHHHHHHHHHHHHhcCCCEeEE--cccC
Q 024322 197 VSNYSEKRLRNAYEKLKKRGIPLASN--QVNY 226 (269)
Q Consensus 197 vS~~~~~~i~~~~~~~~~~~~~~~~~--q~~~ 226 (269)
+-..-.+.++++++. ++.|+++ |...
T Consensus 240 ~~GNaadv~~~l~~~----~i~pDlvtDQTSa 267 (556)
T PRK05414 240 LLGNAADVLPELVRR----GIRPDLVTDQTSA 267 (556)
T ss_pred EeccHHHHHHHHHHc----CCCCCccCcCccc
Confidence 999888888888653 5655554 6544
No 83
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=65.91 E-value=8.8 Score=33.44 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=48.9
Q ss_pred CCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHH----HCCCCEEEcccc---cCCCCCCCCCchHHHHHH
Q 024322 43 GSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSL----DNGITFFDTAEV---YGSRASFGAINSETLLGR 115 (269)
Q Consensus 43 ~tg~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al----~~Gvn~~DtA~~---Yg~g~~~~~~~se~~lG~ 115 (269)
.||+.+|.+||...+-... + .-++...+++.+++..|+ +.|||.|--|-. |.... ++...+
T Consensus 65 etgv~ipSmClSaHRRfPf---G--S~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d-------~eT~~r 132 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPF---G--SKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD-------EETRQR 132 (287)
T ss_pred HhCCCccchhhhhhccCCC---C--CCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC-------HHHHHH
Confidence 5799999999999863221 1 024555677777776665 779999987743 44322 555555
Q ss_pred HHHhccC---CCCCCcEEEEecC
Q 024322 116 FIKERKQ---RDPEVEVTVATKF 135 (269)
Q Consensus 116 al~~~~~---~~~R~~l~I~tK~ 135 (269)
++..... ...+-.|.++--+
T Consensus 133 Fi~g~~~a~~lA~~aqV~lAvEi 155 (287)
T COG3623 133 FIEGLKWAVELAARAQVMLAVEI 155 (287)
T ss_pred HHHHHHHHHHHHHhhccEEEeee
Confidence 5543221 1124566666555
No 84
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=65.85 E-value=18 Score=33.42 Aligned_cols=75 Identities=11% Similarity=-0.060 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024322 179 FIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 179 ~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~ 257 (269)
-++.+.+|++...+. ..|=+-++...+.++++. .-.+++|+.....-.-..-..+...|+.+|+.++..+.+.+
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s 300 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEG 300 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhh
Confidence 366777787776555 667777788888887654 24777777666543212222589999999999987654443
Q ss_pred c
Q 024322 258 G 258 (269)
Q Consensus 258 G 258 (269)
+
T Consensus 301 ~ 301 (368)
T TIGR02534 301 P 301 (368)
T ss_pred H
Confidence 3
No 85
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=65.23 E-value=27 Score=32.36 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hhHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-----~~~~~~~L~ 184 (269)
|+-+-+++++...+++.+-++|.|=+- ...--+.+...+++.-++.+. .++.+|.+.... .+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~---~~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCV---PEIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HH---HHHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCC---HHHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 888888887665433246677777663 223333455555555556654 888899877622 455666655
Q ss_pred HHH-H------cCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcc--------------cCCccCCCcchhhHHHHHH
Q 024322 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYRKPEENGVKAACD 243 (269)
Q Consensus 185 ~L~-~------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~--------------~~n~~~~~~~~~~l~~~~~ 243 (269)
+.. + .+.|--||.++.....+.++.+..+..|+++...-. .+|+.........+.++.+
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~ 212 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLE 212 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHH
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHH
Confidence 444 2 367778899987655666666666666654333211 2444333322112455555
Q ss_pred H-cCCeEEE-cccc
Q 024322 244 E-LGITLIA-YCPI 255 (269)
Q Consensus 244 ~-~gi~via-~spl 255 (269)
+ .|++.+. -.|+
T Consensus 213 e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 213 ERFGIPYLYFPSPY 226 (398)
T ss_dssp HHHT-EEEEEC-SB
T ss_pred HHhCCCeeeccccc
Confidence 5 4999988 4444
No 86
>PLN02591 tryptophan synthase
Probab=64.99 E-value=97 Score=27.18 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.+.+...++++...+.|++.++-.-.|.+..+|+-- =++.--++|+ ...+.+.+.+.+
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpv-Iq~a~~rAL~---------------------~G~~~~~~~~~~ 70 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPV-IQAAATRALE---------------------KGTTLDSVISML 70 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHH-HHHHHHHHHH---------------------cCCCHHHHHHHH
Confidence 356889999999999999999977666654332111 1122223332 346667777777
Q ss_pred HHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
++..++.. +.++++-.....-....-+.++++++.| |.-+=+-....++.+++.+.++++|+.+..
T Consensus 71 ~~~r~~~~---~p~ilm~Y~N~i~~~G~~~F~~~~~~aG-v~GviipDLP~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 71 KEVAPQLS---CPIVLFTYYNPILKRGIDKFMATIKEAG-VHGLVVPDLPLEETEALRAEAAKNGIELVL 136 (250)
T ss_pred HHHhcCCC---CCEEEEecccHHHHhHHHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 77665543 3444444322211234456678888887 444445566788888888888888875544
No 87
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=64.96 E-value=74 Score=30.46 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=64.5
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC----ccceEEee
Q 024322 95 AEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQLH 169 (269)
Q Consensus 95 A~~Yg~g~~~~~~~se~~lG~al~~~~~~~~-R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d----~iDll~lH 169 (269)
.-.||. |+.+-++|++...++| .+=++|.|=+. ...--|.+...+++.-++++-+ .+.++.+|
T Consensus 65 d~VfGG---------~~~L~~~I~~~~~~~~~p~~I~V~tTC~---~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 65 SAVFGG---------AKRVEEGVLVLARRYPDLRVIPIITTCS---TEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred ceEECc---------HHHHHHHHHHHHHhcCCCCEEEEECCch---HhhhccCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 456887 8888899988765542 24467777664 2333444555555443333212 37888999
Q ss_pred cCCCCC--hhHHHHHHHHHHH--------cCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 170 WAGIWG--NEGFIDGLGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 170 ~p~~~~--~~~~~~~L~~L~~--------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
.|+... ......+++.+.+ +++|--||-.+ ++..++++.+..+..|+++.+
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 988743 2233333333332 35677776432 344555555556666665543
No 88
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=64.74 E-value=94 Score=26.90 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=86.1
Q ss_pred HHHHHHHHHCCCCEEEcccccCC---CCCCCCCchHHHHHHHHH---hccCCCCCC-cEEEEecCCCCCCCCCHHHHHHH
Q 024322 78 KAAFDTSLDNGITFFDTAEVYGS---RASFGAINSETLLGRFIK---ERKQRDPEV-EVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 78 ~~~l~~Al~~Gvn~~DtA~~Yg~---g~~~~~~~se~~lG~al~---~~~~~~~R~-~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
.+.+.+|.+.|+..|-+.++... +.. ++.+-...+ ...+. .+ ++++..-+... +......
T Consensus 19 ~e~~~~A~~~g~~~~~iTdH~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~i~i~~G~E~~~~-----~~~~~d~ 85 (237)
T COG1387 19 EEMVEAAIELGLEYIAITDHAPFLRVGLD------AELLKYFIEEIRELKKE--YDIKILIGIEVDIL-----PDGSLDF 85 (237)
T ss_pred HHHHHHHHHcCCeEEEEeccccccccCCC------HHHHHHHHHHHHHHHHh--cCceEEEeEEEEec-----CCCCccc
Confidence 34589999999998888777554 333 444444333 22222 12 23333322211 1111222
Q ss_pred HHHHHHHhCCCccceEEeecC--CCCChhHHHHHHHHHHHcCcccEEEecCc----------cHHHHHHHHHHHHhcCCC
Q 024322 151 LKDSLFRLGLSSVELYQLHWA--GIWGNEGFIDGLGDAVEQGLVKAVGVSNY----------SEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH~p--~~~~~~~~~~~L~~L~~~G~ir~iGvS~~----------~~~~i~~~~~~~~~~~~~ 218 (269)
.+..+..| | .=+..+|.+ .........+.+..+...+.|..||=-+. ....+++.++.+.+.|.-
T Consensus 86 ~~~~~~~l--D-~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a 162 (237)
T COG1387 86 LDEILKEL--D-YVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNGKA 162 (237)
T ss_pred chhhHhhc--C-EEEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhCcE
Confidence 23333332 2 224567886 33456777888889999999888874443 234667777777777765
Q ss_pred EeEEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 024322 219 LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
+.++-- +-...+.. .++..|++.|+.+.
T Consensus 163 leins~---~~~~~~~~-~~~~~~~e~G~~~~ 190 (237)
T COG1387 163 LEINSR---PGRLDPNS-EILRLARELGVKLA 190 (237)
T ss_pred EeecCC---cCccCchH-HHHHHHHHhCCeEE
Confidence 555433 11111122 58999999987765
No 89
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=64.44 E-value=93 Score=27.12 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=83.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CChhHHHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDA 186 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~---~~~~~~~~~L~~L 186 (269)
+.++.++++..........+.++..+.+ .......+...+.+.+++.+++.- -+.+--.+. ...+.+...+.+|
T Consensus 69 ~~v~~~a~~~~~~~~~~~~~~l~iNis~--~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~~L 145 (256)
T COG2200 69 RWVLEEACRQLRTWPRAGPLRLAVNLSP--VQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTALALLRQL 145 (256)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEcCH--HHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHHHHHHHH
Confidence 6677777766553210113777777754 233345566677788888876543 333332222 2344688899999
Q ss_pred HHcCcccEEEecCcc--HHHHHHHHHHHHhcCCCEeEEcccCCccCCCcch-------hhHHHHHHHcCCeEEEccc
Q 024322 187 VEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCP 254 (269)
Q Consensus 187 ~~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~l~~~~~~~gi~via~sp 254 (269)
++.| -.|.+..|. -..+..+.+ .+|+++-+.-+++..-... ..++..|++.|+.++|-+.
T Consensus 146 ~~~G--~~ialDDFGtG~ssl~~L~~------l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV 214 (256)
T COG2200 146 RELG--VRIALDDFGTGYSSLSYLKR------LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV 214 (256)
T ss_pred HHCC--CeEEEECCCCCHHHHHHHhh------CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec
Confidence 9999 347777773 344555543 4788888877665532211 2589999999999998653
No 90
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=64.30 E-value=43 Score=30.95 Aligned_cols=96 Identities=17% Similarity=0.041 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCC----hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEE
Q 024322 147 VLAALKDSLFRLGLSSVELYQLHWAGIWG----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDll~lH~p~~~~----~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (269)
-+-.+-+.|.++|+++|++-.+-.|...+ .+++++.+ ++...++...+. .+.+.++.+++. +.....+
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~----g~~~v~i 140 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAA----GAKEVAV 140 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHc----CcCEEEE
Confidence 35556677999999999987665654322 33445554 343335555564 478888888763 2222111
Q ss_pred cccCCcc------CCCcch-----hhHHHHHHHcCCeEE
Q 024322 223 QVNYSLI------YRKPEE-----NGVKAACDELGITLI 250 (269)
Q Consensus 223 q~~~n~~------~~~~~~-----~~l~~~~~~~gi~vi 250 (269)
-+.-|.. ....++ .+++++++++|+.+.
T Consensus 141 ~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 141 FASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 1111111 111111 158899999999885
No 91
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=64.14 E-value=1e+02 Score=28.06 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=33.6
Q ss_pred eEEcccCCccC---CCcchhhHHHHHHHcCCeEEEcccccCccccccccC
Q 024322 220 ASNQVNYSLIY---RKPEENGVKAACDELGITLIAYCPIAQGELLLFFLT 266 (269)
Q Consensus 220 ~~~q~~~n~~~---~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~~~ 266 (269)
+++|++.+..- .++. .+++.+++.|..|+.|.|.-+|-++.-+.+
T Consensus 237 ~~~~vP~~~~~~~~~w~~--~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~ 284 (309)
T cd08613 237 TTLLIPLNYAPWLWGWPN--RFLARMEAAGTRVILVGPYTGGEFSEGFDT 284 (309)
T ss_pred CeEecCccccceEEeCCH--HHHHHHHHcCCeEEEEecccCCcccCCCCC
Confidence 56788776533 2233 599999999999999999888777765544
No 92
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=64.02 E-value=77 Score=30.87 Aligned_cols=140 Identities=11% Similarity=0.129 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CccceEEeecCCCCC--hhHHHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG--NEGFIDGLGDA 186 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~-d~iDll~lH~p~~~~--~~~~~~~L~~L 186 (269)
++.+-++|.+..++.+.+=++|.|=+. ++-+-..++...++++. .-++++.+|.|.... ....-.+++.+
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~-------~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCT-------SSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCc-------hhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 777777777665444345556655553 23333333333333321 136899999997632 11222223322
Q ss_pred H------------------HcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEeEEcc--------------cCCccCC
Q 024322 187 V------------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYR 231 (269)
Q Consensus 187 ~------------------~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~--------------~~n~~~~ 231 (269)
+ ..++|--||.++. +...++++.+..+..|+++.++-- .+|+...
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~ 222 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPY 222 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEec
Confidence 2 2356888887742 334455555555566665543211 2333221
Q ss_pred CcchhhHHHHHH-HcCCeEEEccccc
Q 024322 232 KPEENGVKAACD-ELGITLIAYCPIA 256 (269)
Q Consensus 232 ~~~~~~l~~~~~-~~gi~via~spl~ 256 (269)
...-..+-++.+ +.|++.+...|++
T Consensus 223 ~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 223 REVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred hhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 111112444444 4589888777764
No 93
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=64.01 E-value=1.2e+02 Score=27.91 Aligned_cols=154 Identities=8% Similarity=-0.068 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~-~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
+.++..+.+..+.+.|++.|=.- .++. .. ... ..-.=+++++ .+ .++-|.-=.. ..++.+...+-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~-~~--~~~-di~~i~~vR~~~G-----~~~~l~vDan---~~~~~~~A~~~~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGP-GV--VRR-DLKACLAVREAVG-----PDMRLMHDGA---HWYSRADALRLG 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCc-hh--HHH-HHHHHHHHHHHhC-----CCCeEEEECC---CCcCHHHHHHHH
Confidence 45777788888999999988542 1211 00 000 1112233333 22 2333332221 234444322221
Q ss_pred HHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCcc-HHHHHHHHHHHHhcCCCEeEEcccCCcc
Q 024322 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~-~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (269)
+.|+. +++.++..|- +.+ -++.+.+|+++-.|. ..|=+-++ ...++++++. -..+++|+..+.+
T Consensus 210 -~~l~~-----~~l~~iEeP~--~~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~ 275 (368)
T cd03329 210 -RALEE-----LGFFWYEDPL--REA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLV 275 (368)
T ss_pred -HHhhh-----cCCCeEeCCC--Cch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCcccc
Confidence 22333 3455555553 222 357788888875544 33444456 7777777664 2588888877765
Q ss_pred CCCcchhhHHHHHHHcCCeEEEcc
Q 024322 230 YRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~via~s 253 (269)
-.-.+-..+...|+++|+.+..++
T Consensus 276 GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 276 GGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEC
Confidence 332222258999999999997654
No 94
>PRK08123 histidinol-phosphatase; Reviewed
Probab=63.84 E-value=1e+02 Score=27.05 Aligned_cols=72 Identities=18% Similarity=0.335 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCc-------ccEEEe-----cCcc-------HHHHHHHHHHHHhcCCCEeEEcccCCc--c-CCCcch
Q 024322 178 GFIDGLGDAVEQGL-------VKAVGV-----SNYS-------EKRLRNAYEKLKKRGIPLASNQVNYSL--I-YRKPEE 235 (269)
Q Consensus 178 ~~~~~L~~L~~~G~-------ir~iGv-----S~~~-------~~~i~~~~~~~~~~~~~~~~~q~~~n~--~-~~~~~~ 235 (269)
..++.+.++.+.|. +.|+.+ ..+. .+.++++++.+.+.+..+.+|--.+.- . ..-+..
T Consensus 153 ~Y~~~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEINtsgl~~~~~~~~yP~~ 232 (270)
T PRK08123 153 AYYETVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRGYELDFNTAGLRKPYCGEPYPPG 232 (270)
T ss_pred HHHHHHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCcH
Confidence 34556667777663 555542 1111 246788888888888777777543321 1 122222
Q ss_pred hhHHHHHHHcCCeEE
Q 024322 236 NGVKAACDELGITLI 250 (269)
Q Consensus 236 ~~l~~~~~~~gi~vi 250 (269)
.+++.|++.|+.++
T Consensus 233 -~il~~~~e~g~~it 246 (270)
T PRK08123 233 -EIITLAKKLGIPLV 246 (270)
T ss_pred -HHHHHHHHcCCCEE
Confidence 59999999999865
No 95
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=63.75 E-value=96 Score=28.04 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCcc--cEEEecCccHHHHH-------------HHHHHHHhcCCC
Q 024322 180 IDGLGDAVEQGLV--KAVGVSNYSEKRLR-------------NAYEKLKKRGIP 218 (269)
Q Consensus 180 ~~~L~~L~~~G~i--r~iGvS~~~~~~i~-------------~~~~~~~~~~~~ 218 (269)
-+.|+.|++.|.- -+||+=+++.+.++ ++++.++..|+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~ 170 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAG 170 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc
Confidence 3455666777762 56777766655543 455555555654
No 96
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=63.57 E-value=45 Score=28.47 Aligned_cols=23 Identities=0% Similarity=-0.106 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~Dt 94 (269)
.+.+.+.++++.|++.|+...|+
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 35688899999999998765554
No 97
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=63.48 E-value=77 Score=29.90 Aligned_cols=106 Identities=10% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--hhHHHHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~--~~~~~~~L~~L~ 187 (269)
++.+-++|.+...+++.+-++|.|=+- ...--+.++..+++.-++++ +.++.+|.|.... ....-.+|+.+.
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~---~~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~g~~~al~~l~ 143 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCT---SSILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNELQAADETFEQLV 143 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcc---HHHHhhCHHHHHHHhhhccC---CCeEEecCCCccchHHHHHHHHHHHHH
Confidence 456666666554433244556666543 23333444444444433433 6788899887632 222222332222
Q ss_pred -----------------HcCcccEEEecCcc---HHHHHHHHHHHHhcCCCEeE
Q 024322 188 -----------------EQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 188 -----------------~~G~ir~iGvS~~~---~~~i~~~~~~~~~~~~~~~~ 221 (269)
++..|--||.++.+ ...++++.+..+..|+++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~ 197 (430)
T cd01981 144 RFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNV 197 (430)
T ss_pred HHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 12457788877532 45555555556666766544
No 98
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.32 E-value=46 Score=29.34 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-------CChhHHHHHHHHHHHcCcccEEEecC
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSN 199 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-------~~~~~~~~~L~~L~~~G~ir~iGvS~ 199 (269)
+.++.+... .+-+.|.++|+|+|++-+...... ....+.++.+.++.+ +..+..+++.
T Consensus 15 ~~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~ 79 (266)
T cd07944 15 WDFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVD 79 (266)
T ss_pred ccCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEEC
Confidence 456666544 455558888988888876544221 113455555555543 2345555543
No 99
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=63.22 E-value=69 Score=28.32 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 024322 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (269)
Q Consensus 78 ~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~ 157 (269)
.+.++.|++.|=-.|=.+.+||| -++.+.++.... ..+.+..+- .....+.+-+.+..++
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 35678888888777778889998 778889998765 355555443 2234566667777777
Q ss_pred hCCCccc
Q 024322 158 LGLSSVE 164 (269)
Q Consensus 158 L~~d~iD 164 (269)
.|.+.++
T Consensus 170 ~g~~~i~ 176 (295)
T PF03279_consen 170 FGIELIP 176 (295)
T ss_pred cCCeEec
Confidence 7765443
No 100
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=62.75 E-value=21 Score=30.32 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHhCCCccceEEee-cCCCCChhHHHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEeEEcccC
Q 024322 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 155 L~~L~~d~iDll~lH-~p~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (269)
+.++|.|++=+++.. .|...+.+.+-+....+ .+.++.+||. +-+++.+.++++. ..++++|++-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVET-----VPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECC
Confidence 346899999987433 34334444443333333 3568999987 5588888888765 5789999964
No 101
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=61.98 E-value=2e+02 Score=29.79 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc--CcccEEEecCccHHHHHHHHHHHHhcCCCE
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (269)
.+.+.+++.++...........-+|+|+..+... .+.+.+|.+..++ ..+++|-++|.....+..+.+.|
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC------- 170 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC------- 170 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe-------
Confidence 4456666666655433322345688888776544 3457777777777 58999999997655555554442
Q ss_pred eEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024322 220 ASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (269)
.+++|..+.......-|...|++.||.
T Consensus 171 --q~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 171 --LQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred --EEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 344444444322221234455555554
No 102
>PLN02428 lipoic acid synthase
Probab=61.84 E-value=1.4e+02 Score=27.74 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcc-c---ccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTA-E---VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA-~---~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v 147 (269)
.+.++..++...+.+.|++++=-. . .|-++. -..+.+.++...... ..+.|..-... ...+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-------a~~~~elir~Ir~~~--P~i~Ie~L~pd--f~~d---- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-------SGHFAETVRRLKQLK--PEILVEALVPD--FRGD---- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-------HHHHHHHHHHHHHhC--CCcEEEEeCcc--ccCC----
Confidence 345666678888888999865422 1 232221 345555555544221 13333332210 1112
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC------------CChhHHHHHHHHHHHc--Cccc----EEEecCccHHHHHHHH
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLVK----AVGVSNYSEKRLRNAY 209 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~------------~~~~~~~~~L~~L~~~--G~ir----~iGvS~~~~~~i~~~~ 209 (269)
++.|+.|.-.-+|. +-|+++. ...++.++.|+.+++. |..- -+|+ +-+.+++.+.+
T Consensus 195 ----~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 195 ----LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred ----HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 33333332223555 3366654 1257889999999998 7643 3566 45778888888
Q ss_pred HHHHhcCCCEeEE-cc--------cCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024322 210 EKLKKRGIPLASN-QV--------NYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 210 ~~~~~~~~~~~~~-q~--------~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~ 257 (269)
..+++.++.+..+ |. +.+.+....+-+.+-+++.+.|...++.+||-+
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 8877766543222 22 222222222223578889999999999999864
No 103
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=61.75 E-value=1.4e+02 Score=27.80 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
..+.++..++++.+.+.|++.|-- .| |+. -. ..-+-+.++.......-..+.|+|-.. - +.+.
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~---tG-GEP-ll---r~dl~eli~~l~~~~gi~~i~itTNG~----l-----L~~~ 151 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRL---TG-GEP-TL---RKDIEDICLQLSSLKGLKTLAMTTNGI----T-----LSRK 151 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE---EC-CCC-cc---hhhHHHHHHHHHhcCCCceEEEeeCcc----h-----HHHH
Confidence 367789999999999999987753 34 211 00 111223333221100012466776542 1 1122
Q ss_pred HHHHHHHhCCCccceEEeecCCC---------CChhHHHHHHHHHHHcCc--cc--EEEecCccHHHHHHHHHHHHhcCC
Q 024322 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--VK--AVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH~p~~---------~~~~~~~~~L~~L~~~G~--ir--~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
+ ..|+..|++.+- +-|+..++ ...+.+++.++.+++.|+ |+ .+-+.+++.+++..+++.++..++
T Consensus 152 ~-~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi 229 (373)
T PLN02951 152 L-PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI 229 (373)
T ss_pred H-HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC
Confidence 2 234445554432 22333322 225789999999999985 22 233446788899999998877654
Q ss_pred CEeEEcccCCccCCCcc-------hhhHHHHHHHc
Q 024322 218 PLASNQVNYSLIYRKPE-------ENGVKAACDEL 245 (269)
Q Consensus 218 ~~~~~q~~~n~~~~~~~-------~~~l~~~~~~~ 245 (269)
.+.-++|.++..... ..++++..+++
T Consensus 230 --~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~ 262 (373)
T PLN02951 230 --NVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQR 262 (373)
T ss_pred --eEEEEEcccCCCCccccccCCCHHHHHHHHHHh
Confidence 444445555443211 12466666654
No 104
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.70 E-value=1.9e+02 Score=29.39 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc--CcccEEEecCccHHHHHHHHHHHH
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~i~~~~~~~~ 213 (269)
.+.+.+++-++.....-....--+++|+..+... .+.+.+|.+..|+ +.+++|.+++.....+..+.+.|.
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 4456677766665544333456688888776543 4566777777777 889999999977666667766654
No 105
>TIGR03586 PseI pseudaminic acid synthase.
Probab=61.36 E-value=1.3e+02 Score=27.50 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHH-----------------HHHhccCCCCCCcEEEEec
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR-----------------FIKERKQRDPEVEVTVATK 134 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~-----------------al~~~~~~~~R~~l~I~tK 134 (269)
.+.++..++.+++-+.|+.|+=|...-.. -..+-+ .|+.... ....|+|+|=
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~s---------vd~l~~~~v~~~KI~S~~~~n~~LL~~va~--~gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETA---------VDFLESLDVPAYKIASFEITDLPLIRYVAK--TGKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHH---------HHHHHHcCCCEEEECCccccCHHHHHHHHh--cCCcEEEECC
Confidence 45678888999999999999877433211 111111 1111111 1245555554
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC---hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 135 FAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 135 ~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~---~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
. .+.+.++.+++...+. |. -|+.++|+...++ .+--+.++..|++.=. .-||+|.|+.....-++..
T Consensus 143 ~------~t~~Ei~~Av~~i~~~-g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAv 212 (327)
T TIGR03586 143 I------ATLEEIQEAVEACREA-GC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAV 212 (327)
T ss_pred C------CCHHHHHHHHHHHHHC-CC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHH
Confidence 3 4788888888887643 32 4799999865433 2223566666666543 4699999976554444443
Q ss_pred HHhcCCCEeEEcccCCcc
Q 024322 212 LKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~ 229 (269)
+ .| -.++.-++++-
T Consensus 213 a--~G--A~iIEkH~tld 226 (327)
T TIGR03586 213 A--LG--ACVIEKHFTLD 226 (327)
T ss_pred H--cC--CCEEEeCCChh
Confidence 3 22 23555555553
No 106
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=60.94 E-value=87 Score=28.40 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=62.5
Q ss_pred HHHhCCCccceEEeecCCC------CChhHHHHHHHHHHHcCcc-cEEEecCc---cHHHHHHHHHHHHhcCCCEeEEcc
Q 024322 155 LFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLV-KAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 155 L~~L~~d~iDll~lH~p~~------~~~~~~~~~L~~L~~~G~i-r~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~ 224 (269)
-++.| .|++-+|-... .+..|+.+.|+++.+.=+| --||=|+. +++.++++.+.++.. +.-..-.
T Consensus 160 Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGe--RclLaSa 234 (403)
T COG2069 160 VKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGE--RCLLASA 234 (403)
T ss_pred HHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCc--eEEeecc
Confidence 34556 67888885432 4578899999988877554 46787765 678899998886533 2222222
Q ss_pred cCCccCCCcchhhHHHHHHHcCCeEEEccccc
Q 024322 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 225 ~~n~~~~~~~~~~l~~~~~~~gi~via~spl~ 256 (269)
+.++ +-+ .+.+.+.++|=.|++|+++.
T Consensus 235 nldl---Dy~--~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 235 NLDL---DYE--RIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cccc---CHH--HHHHHHHhcCceEEEeeccC
Confidence 2222 112 48999999999999999874
No 107
>PTZ00413 lipoate synthase; Provisional
Probab=60.62 E-value=1.5e+02 Score=27.90 Aligned_cols=171 Identities=14% Similarity=0.167 Sum_probs=95.3
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
...++++-.++-+.+.+.|++|+=.+...++-..| .--..+.++++..... ..++.|..-++. ...+.+.+++
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D---~ga~~~a~~I~~Ir~~--~p~~~IevligD--f~g~~e~l~~ 247 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPD---GGASHVARCVELIKES--NPELLLEALVGD--FHGDLKSVEK 247 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCCh---hhHHHHHHHHHHHHcc--CCCCeEEEcCCc--cccCHHHHHH
Confidence 44577888888888899999977544444321110 0035566666665422 135777777642 1113333322
Q ss_pred HHHHHHHHhCCCccceEEeecCCC------------CChhHHHHHHHHHHHc---Cc-ccE---EEecCccHHHHHHHHH
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ---GL-VKA---VGVSNYSEKRLRNAYE 210 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~------------~~~~~~~~~L~~L~~~---G~-ir~---iGvS~~~~~~i~~~~~ 210 (269)
|..-| +|.| -|+.+. ...++.|+.|+..++. |. +++ +|+.. +.+++.+++.
T Consensus 248 -----L~eAG---~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m~ 317 (398)
T PTZ00413 248 -----LANSP---LSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTLR 317 (398)
T ss_pred -----HHhcC---CCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHHH
Confidence 22333 3332 244322 2367889999988874 32 332 45444 5566777777
Q ss_pred HHHhcCCCEeEE-cc-----cCCccCCC--cc-hhhHHHHHHHcCCeEEEcccccC
Q 024322 211 KLKKRGIPLASN-QV-----NYSLIYRK--PE-ENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 211 ~~~~~~~~~~~~-q~-----~~n~~~~~--~~-~~~l~~~~~~~gi~via~spl~~ 257 (269)
.+...++.+..+ |. ...++.+. ++ -+.+-+.+.+.|...++.+||-+
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 677777654333 42 01111111 11 12477888999999999999864
No 108
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.50 E-value=46 Score=31.60 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhc---CCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 181 ~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
+-...+-+.|-+.++|..+.+++++++.+..++.. +-+|-+|-+ .++-++.. +.++++.|.++||.++..+.
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~-e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPEL-EEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchh-HHHHHHHHHHcCCCEEEecc
Confidence 34455677899999999999999999998888763 345666554 33332222 23589999999998776653
No 109
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=60.25 E-value=1.1e+02 Score=29.61 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=61.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--hhHHHHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~--~~~~~~~L~~L~ 187 (269)
++.+-++|.+...+++.+-++|.+=+ .++-+-..++...++++.+.++++.++.|+... ....-.+|+.++
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 88888888877644433445555544 344454555555666665568899999887632 222223333322
Q ss_pred --------------HcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEeEE
Q 024322 188 --------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 188 --------------~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~ 222 (269)
+.+.|--||.++. +...+.++.+..+..|+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 2345888888753 3455555555566667665443
No 110
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=60.05 E-value=39 Score=28.64 Aligned_cols=77 Identities=29% Similarity=0.363 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEc
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q 223 (269)
...+.+.+++.++.+|.+ ++++ .+...+.+...+.++.+.++| +..|=++..+...+...++.+...|+|+..+-
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~---~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV---FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE---EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe---CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEEe
Confidence 456888999999999864 3333 223345678889999999888 88888887776666666666777777665543
Q ss_pred cc
Q 024322 224 VN 225 (269)
Q Consensus 224 ~~ 225 (269)
..
T Consensus 88 ~~ 89 (257)
T PF13407_consen 88 SD 89 (257)
T ss_dssp ST
T ss_pred cc
Confidence 33
No 111
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.05 E-value=61 Score=27.63 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCE
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (269)
.++.+...+ +-+.|.++|+++|++- .|.. ....+.++.+.+.... .+..+++....+.++.+++.+...+...
T Consensus 10 ~~~~~~k~~-i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEKLE-IAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHHHH-HHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHHHH-HHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 345554444 4456888998888877 2221 1123344444444444 4445556566677777666555555544
Q ss_pred eEEcccCCccCCC------cc-----hhhHHHHHHHcCCeE
Q 024322 220 ASNQVNYSLIYRK------PE-----ENGVKAACDELGITL 249 (269)
Q Consensus 220 ~~~q~~~n~~~~~------~~-----~~~l~~~~~~~gi~v 249 (269)
.-+-...|..+.. .+ -.+.++++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 3333344431110 00 014677888888777
No 112
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=60.04 E-value=98 Score=28.77 Aligned_cols=105 Identities=22% Similarity=0.197 Sum_probs=60.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------hhHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~------~~~~~~~L 183 (269)
|+.+-+++++...+++.+=++|.|=+- ...--+.++..+++.-++.+ +.++.+|.|+... .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~---~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCP---TGLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCc---hhhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 888888888766544344566666664 23334445555555444544 7899999886522 44455555
Q ss_pred HHHH---------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 184 ~~L~---------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
.+.. +.+.|--||..++. ..+.++.+..+..|+++..
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gi~~~~ 191 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIG-GDAWVIKPLLEELGIRVNA 191 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccc-hhHHHHHHHHHHcCCEEEE
Confidence 4432 23557788877652 2344444445556665443
No 113
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=59.80 E-value=1.2e+02 Score=26.69 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.+...++++...+.|+.+++-.-.|.+...||- .=++.--++|+ ...+.+.+.+.++
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGp-vIq~A~~rAL~---------------------~G~~~~~~~~~~~ 79 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGP-VIQKASQRALK---------------------NGFTLEKIFELVK 79 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSH-HHHHHHHHHHH---------------------TT--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCH-HHHHHHHHHHH---------------------CCCCHHHHHHHHH
Confidence 5688999999999999999996655554322110 01122222232 2345555666555
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCC
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (269)
+..++- ..+.++++-.....-..+.-+.++++++.| |..+=+-....++-+++.+.++++|+.
T Consensus 80 ~ir~~~--~~~pivlm~Y~N~i~~~G~e~F~~~~~~aG-vdGlIipDLP~ee~~~~~~~~~~~gl~ 142 (259)
T PF00290_consen 80 EIRKKE--PDIPIVLMTYYNPIFQYGIERFFKEAKEAG-VDGLIIPDLPPEESEELREAAKKHGLD 142 (259)
T ss_dssp HHHHHC--TSSEEEEEE-HHHHHHH-HHHHHHHHHHHT-EEEEEETTSBGGGHHHHHHHHHHTT-E
T ss_pred HHhccC--CCCCEEEEeeccHHhccchHHHHHHHHHcC-CCEEEEcCCChHHHHHHHHHHHHcCCe
Confidence 555221 124455544321100112223455555555 344444455555555665556655554
No 114
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=59.66 E-value=1.2e+02 Score=26.47 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA 95 (269)
.+.++..++++.-.+.||..++.+
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 456888899999999999999987
No 115
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=59.61 E-value=1.2e+02 Score=26.55 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceE-EeecCCC--CChh-H---HHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHh
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELY-QLHWAGI--WGNE-G---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll-~lH~p~~--~~~~-~---~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~ 214 (269)
.+++.+.+.+++.+ +-|.|+||+= .--+|+. .+.+ | +...++.+++.-.+ -|.+-+++++.++++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~--- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEA--- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc---
Confidence 45666666665554 4588999983 1123433 2223 2 44555666665223 388889999999999874
Q ss_pred cCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
|. .-+|-+.. .. .+ ++++.++++|..++.+--
T Consensus 95 -G~-~iINsis~--~~--~~--~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 95 -GA-DIINDVSG--GQ--DP--AMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred -CC-CEEEECCC--CC--Cc--hhHHHHHHcCCcEEEEeC
Confidence 32 33433322 21 12 489999999999999643
No 116
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=59.60 E-value=1.2e+02 Score=29.21 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=61.7
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC
Q 024322 95 AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW 174 (269)
Q Consensus 95 A~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~ 174 (269)
.-.||. |+.|-++|.+...+++.+=++|.|=+- ...--+.+...+++.-++++ +.++.++.++..
T Consensus 98 dvVfGg---------~~kL~~~I~ei~~~~~P~~I~V~tTC~---~~lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~ 162 (475)
T PRK14478 98 DVVFGG---------EKKLFKAIDEIIEKYAPPAVFVYQTCV---VALIGDDIDAVCKRAAEKFG---IPVIPVNSPGFV 162 (475)
T ss_pred ceeeCC---------HHHHHHHHHHHHHhcCCCEEEEeCCCh---HHHhccCHHHHHHHHHHhhC---CCEEEEECCCcc
Confidence 346786 888888888776544345566666663 23333344444444444554 678888888763
Q ss_pred C-----hhHHHHHHH-HHH--------HcCcccEEEecCcc--HHHHHHHHHHHHhcCCCEe
Q 024322 175 G-----NEGFIDGLG-DAV--------EQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 175 ~-----~~~~~~~L~-~L~--------~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~~~ 220 (269)
. .+.++++|. +|. +.+.|--||-.++. .+.|+++ .+..|+++.
T Consensus 163 g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~l---L~~~Gl~v~ 221 (475)
T PRK14478 163 GNKNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPL---LDRLGIRVV 221 (475)
T ss_pred cchhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHH---HHHcCCeEE
Confidence 2 333444443 243 23567788866653 3455555 445566554
No 117
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=59.57 E-value=1.2e+02 Score=26.51 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=72.8
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEecCCC----------
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINS--ETLLGRFIKERKQRDPEVEVTVATKFAA---------- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~s--e~~lG~al~~~~~~~~R~~l~I~tK~~~---------- 137 (269)
+.+|.+..++.++..++.|++-+-..-.-|-+.+ +... ++++..+.+.... |-.+++.+-...
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~--ls~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~ 87 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPT--LTDEERKEVIEAVVEAVAG---RVPVIAGVGANSTREAIELARH 87 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccccc--CCHHHHHHHHHHHHHHhCC---CCeEEEecCCccHHHHHHHHHH
Confidence 4578899999999999999997765444343222 1112 2344444444331 334444433211
Q ss_pred ------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHH
Q 024322 138 ------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 138 ------------~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 203 (269)
.| +..+.+.+.+-+++..+.. + +.+++.|.|......=..+.+.+|.+...|..|=.|..+..
T Consensus 88 a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~--~-~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~ 164 (281)
T cd00408 88 AEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS--D-LPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLD 164 (281)
T ss_pred HHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC--C-CCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHH
Confidence 01 2235566666666666652 2 66777777765332223445555555555555555555666
Q ss_pred HHHHHHH
Q 024322 204 RLRNAYE 210 (269)
Q Consensus 204 ~i~~~~~ 210 (269)
++.++.+
T Consensus 165 ~~~~~~~ 171 (281)
T cd00408 165 RLTRLIA 171 (281)
T ss_pred HHHHHHH
Confidence 6666644
No 118
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=59.50 E-value=1.4e+02 Score=27.28 Aligned_cols=81 Identities=10% Similarity=0.025 Sum_probs=43.6
Q ss_pred CcEEEEecCCCCCC---CCCHHHHHHHHHHHHHHhC-CCccceEEeecCC--------------CCChhHHHHHHHHHHH
Q 024322 127 VEVTVATKFAALPW---RLGRQSVLAALKDSLFRLG-LSSVELYQLHWAG--------------IWGNEGFIDGLGDAVE 188 (269)
Q Consensus 127 ~~l~I~tK~~~~~~---~~~~~~v~~~v~~sL~~L~-~d~iDll~lH~p~--------------~~~~~~~~~~L~~L~~ 188 (269)
.++.|..|++.... ..+.+... .+-+.|++.| +|+|+ +|... ..+..-.|+....+++
T Consensus 207 ~~~~v~iRl~~~~~~~~G~~~~e~~-~~~~~l~~~G~vd~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~ 282 (343)
T cd04734 207 PDFIVGIRISGDEDTEGGLSPDEAL-EIAARLAAEGLIDYVN---VSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQ 282 (343)
T ss_pred CCCeEEEEeehhhccCCCCCHHHHH-HHHHHHHhcCCCCEEE---eCCCCCCcccccccccCCCCCCcchhHHHHHHHHH
Confidence 56788888875321 13444333 3334445555 45554 43211 0111223566666666
Q ss_pred cCcccEEEecCc-cHHHHHHHHHH
Q 024322 189 QGLVKAVGVSNY-SEKRLRNAYEK 211 (269)
Q Consensus 189 ~G~ir~iGvS~~-~~~~i~~~~~~ 211 (269)
.=++.-|++.++ +++.++++++.
T Consensus 283 ~~~ipvi~~G~i~~~~~~~~~l~~ 306 (343)
T cd04734 283 AVDLPVFHAGRIRDPAEAEQALAA 306 (343)
T ss_pred HcCCCEEeeCCCCCHHHHHHHHHc
Confidence 656777777765 77888888653
No 119
>PRK14017 galactonate dehydratase; Provisional
Probab=59.26 E-value=36 Score=31.65 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=57.3
Q ss_pred cceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHH
Q 024322 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (269)
+++.++..|-. .+-++.+.+|+++..+. ..|=|-++...++.+++. --++++|+..+.+-.-.....+.+.
T Consensus 203 ~~~~~iEeP~~---~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~~~GGit~~~~ia~~ 274 (382)
T PRK14017 203 YRPMFIEEPVL---PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLSHAGGITECRKIAAM 274 (382)
T ss_pred cCCCeEECCCC---cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCccccCCHHHHHHHHHH
Confidence 45556665532 22357788888886655 666777788888888664 2478888877655321222258999
Q ss_pred HHHcCCeEEEccc
Q 024322 242 CDELGITLIAYCP 254 (269)
Q Consensus 242 ~~~~gi~via~sp 254 (269)
|+++||.++.++.
T Consensus 275 A~~~gi~~~~h~~ 287 (382)
T PRK14017 275 AEAYDVALAPHCP 287 (382)
T ss_pred HHHcCCeEeecCC
Confidence 9999999998864
No 120
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=59.23 E-value=78 Score=29.26 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=59.2
Q ss_pred EEeecCCC------------CChhHHHHHHHHHHH-cCc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEeEEcccCC
Q 024322 166 YQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 166 l~lH~p~~------------~~~~~~~~~L~~L~~-~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (269)
+-||.++. .+.+++++++.++.+ .|+ |+++=+.++ +.+.++++.+.++. +++.++-++||
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn 296 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPWN 296 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEecc
Confidence 66898764 235788888876544 442 334444444 56888888877653 34677778999
Q ss_pred ccCCCc----chh---hHHHHHHHcCCeEEEcccccCc
Q 024322 228 LIYRKP----EEN---GVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 228 ~~~~~~----~~~---~l~~~~~~~gi~via~spl~~G 258 (269)
++.... ... .+.++.+++|+.++.....+.-
T Consensus 297 p~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 297 PFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDD 334 (355)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcc
Confidence 865322 111 3566777889999998877543
No 121
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=59.21 E-value=92 Score=24.99 Aligned_cols=156 Identities=14% Similarity=0.084 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccC-CCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYG-SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg-~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+|.....++.|++.|.+.|++--..- +|.---.|- -..+-++|+.... +-.++|=.|... . .+.+.+.+-
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd-i~tL~e~l~~~~~---~~~i~leiK~~~----~-~~~~~~~l~ 82 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD-IPTLEEVLELVKG---GVGLNIELKEPT----R-YPGLEAKVA 82 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC-CCCHHHHHHhccc---CcEEEEEECCCC----C-chhHHHHHH
Confidence 38888999999999999887532211 110000000 1223344444331 124555556521 1 334455555
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCC
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (269)
+.+++.+. .+-+++...+ .+.+..+.++..+ + .+|+...+..........+.. ..++.+..++..+.
T Consensus 83 ~~i~~~~~--~~~v~i~s~~----~~~l~~~~~~~p~--~-~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-- 149 (189)
T cd08556 83 ELLREYGL--EERVVVSSFD----HEALRALKELDPE--V-PTGLLVDKPPLDPLLAELARA--LGADAVNPHYKLLT-- 149 (189)
T ss_pred HHHHHcCC--cCCEEEEeCC----HHHHHHHHHhCCC--C-cEEEEeecCcccchhhhHHHh--cCCeEEccChhhCC--
Confidence 55666552 3444444432 2333333322222 1 133332211111110000111 23555555555432
Q ss_pred cchhhHHHHHHHcCCeEEEccc
Q 024322 233 PEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~sp 254 (269)
..+++.|+++|+.+++|..
T Consensus 150 ---~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 ---PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred ---HHHHHHHHHcCCEEEEEcC
Confidence 2589999999999999975
No 122
>PLN02363 phosphoribosylanthranilate isomerase
Probab=59.20 E-value=31 Score=30.43 Aligned_cols=80 Identities=15% Similarity=0.034 Sum_probs=49.2
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEee-cCCCCChhHHHHHHHHHHHcCcccEEEec-CccHHHHHHHHH
Q 024322 133 TKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYE 210 (269)
Q Consensus 133 tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH-~p~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~i~~~~~ 210 (269)
.|++. -.+.+.++.+. ++|.|+|=+++.. .|...+.+.+-+....+ ....++.+||. +-+.+.+.++++
T Consensus 49 VKICG---it~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l-~~~~~~~VgVfv~~~~~~I~~~~~ 119 (256)
T PLN02363 49 VKMCG---ITSARDAAMAV-----EAGADFIGMILWPKSKRSISLSVAKEISQVA-REGGAKPVGVFVDDDANTILRAAD 119 (256)
T ss_pred EEECC---CCcHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHHHHHHHhc-cccCccEEEEEeCCCHHHHHHHHH
Confidence 45543 34455454443 5899999987543 33334444444444433 22246789986 668888888876
Q ss_pred HHHhcCCCEeEEcccC
Q 024322 211 KLKKRGIPLASNQVNY 226 (269)
Q Consensus 211 ~~~~~~~~~~~~q~~~ 226 (269)
. ..++++|++-
T Consensus 120 ~-----~~ld~VQLHG 130 (256)
T PLN02363 120 S-----SDLELVQLHG 130 (256)
T ss_pred h-----cCCCEEEECC
Confidence 5 5789999964
No 123
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=59.18 E-value=1.5e+02 Score=27.26 Aligned_cols=135 Identities=15% Similarity=0.075 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHH-----------------HHHhccCCCCCCcEEEEec
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR-----------------FIKERKQRDPEVEVTVATK 134 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~-----------------al~~~~~~~~R~~l~I~tK 134 (269)
.+.+....+.+.|-+.|+.+|=|...-.. -..+-+ .|+.... ....++|+|=
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~s---------vd~l~~~~v~~~KIaS~~~~n~pLL~~~A~--~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLES---------ADFLEDLGVPRFKIPSGEITNAPLLKKIAR--FGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHH---------HHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCcEEEECC
Confidence 56688999999999999999877433211 111111 1111111 1246666665
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC---hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 135 FAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 135 ~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~---~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
. .+.+.++.+++...+. |.+.-|+.++|+...+| .+--+.++..|++.=. .-||+|.|+.....-+..+
T Consensus 142 m------atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAv 213 (329)
T TIGR03569 142 M------ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAV 213 (329)
T ss_pred C------CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHH
Confidence 4 4788899999888644 43222689999865433 2223556666665532 4699999976554444444
Q ss_pred HHhcCCCEeEEcccCCcc
Q 024322 212 LKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~ 229 (269)
+ .| -+++.-++.+-
T Consensus 214 a--lG--A~iIEkH~tld 227 (329)
T TIGR03569 214 A--LG--ATVIEKHFTLD 227 (329)
T ss_pred H--cC--CCEEEeCCChh
Confidence 3 22 33555555543
No 124
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=59.16 E-value=1.3e+02 Score=28.09 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=64.2
Q ss_pred eEEeecCCC------------CChhHHHHHHHHHHH-cCc---ccEEEecCc--cHHHHHHHHHHHHhcC-CCEeEEccc
Q 024322 165 LYQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVSNY--SEKRLRNAYEKLKKRG-IPLASNQVN 225 (269)
Q Consensus 165 ll~lH~p~~------------~~~~~~~~~L~~L~~-~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~-~~~~~~q~~ 225 (269)
.+-||.++. ++.+++++++.+..+ .|+ |.++=+.++ +.+.++++.+.++... .+..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 467888765 336888999877764 454 445555544 6677777777765431 257889999
Q ss_pred CCccCCCcc----h---hhHHHHHHHcCCeEEEcccccCcc
Q 024322 226 YSLIYRKPE----E---NGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 226 ~n~~~~~~~----~---~~l~~~~~~~gi~via~spl~~G~ 259 (269)
||++..... . ....+..+++||.+......+.-+
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI 361 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEI 361 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCH
Confidence 999654221 1 146777889999999988876533
No 125
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=59.08 E-value=1.2e+02 Score=26.29 Aligned_cols=168 Identities=16% Similarity=0.183 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCC--CCCCCC---CchHHHHHHHHHhc---cCCCC-CCcEEEEecCCCCCCCCCHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGS--RASFGA---INSETLLGRFIKER---KQRDP-EVEVTVATKFAALPWRLGRQ 145 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~--g~~~~~---~~se~~lG~al~~~---~~~~~-R~~l~I~tK~~~~~~~~~~~ 145 (269)
+...+.+++|++.|+..+=-+++.-. .....- ..+..-+-+.++.. ..+++ +=+|.+.--+. +-+
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~GiE~~-----~~~- 88 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILIGLEVD-----YIP- 88 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEEEEEec-----ccc-
Confidence 45667899999999998766655220 000000 00122233333222 11110 12344444442 222
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCC----C--------------Chh----HHHHHHHHHHHcC----cccEEEec-
Q 024322 146 SVLAALKDSLFRLGLSSVELYQLHWAGI----W--------------GNE----GFIDGLGDAVEQG----LVKAVGVS- 198 (269)
Q Consensus 146 ~v~~~v~~sL~~L~~d~iDll~lH~p~~----~--------------~~~----~~~~~L~~L~~~G----~ir~iGvS- 198 (269)
.....++..|++.+.||+ +..+|+... . +.+ +.++.+.++.+.. .+.|+.+-
T Consensus 89 ~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~i~~~~~~dvlgH~Dli~ 167 (253)
T TIGR01856 89 GFEDFTKDFLDEYGLDFV-IGSVHFLGGIPIDFDAEEFNEGLVSFYGNLEQAQRDYFESVYDSIQALFKPLVIGHIDLVQ 167 (253)
T ss_pred chHHHHHHHHHHCCCCeE-EEEEEeecCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCcccHhHHH
Confidence 234557778888888888 888897641 1 112 2233445555542 22333221
Q ss_pred ---C--------cc--HHHHHHHHHHHHhcCCCEeEEcccCC--ccCCCcchhhHHHHHHHcCCeEE
Q 024322 199 ---N--------YS--EKRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 199 ---~--------~~--~~~i~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
. +. .+.++++++.+.+.|..+.+|-..+. ....-+.. .+++.|++.|+.|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~~-~il~~~~~~g~~it 233 (253)
T TIGR01856 168 KFGPLFTDVSSFSDEVYELLQRILKLVASQGKALEFNTSGLRKPLEEAYPSK-ELLNLAKELGIPLV 233 (253)
T ss_pred HhCccccccccccHHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCCCCCCCH-HHHHHHHHcCCCEE
Confidence 1 00 13477888888888877777754332 22222223 49999999999854
No 126
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=58.98 E-value=30 Score=33.55 Aligned_cols=86 Identities=9% Similarity=0.036 Sum_probs=52.9
Q ss_pred CCCcEEEEecCCCCC----------------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHH
Q 024322 125 PEVEVTVATKFAALP----------------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (269)
Q Consensus 125 ~R~~l~I~tK~~~~~----------------~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~ 188 (269)
-+.++|+++=+|... -+.++ ++.-+|+.+.|+|.+. .+.+++++..++.++
T Consensus 155 L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~-------~ri~kR~~~g~ld~~~------~~ldea~~~~~ea~~ 221 (546)
T PF01175_consen 155 LAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDP-------SRIEKRLEQGYLDEVT------DDLDEALARAKEARA 221 (546)
T ss_dssp -TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-H-------HHHHHHHHTTSSSEEE------SSHHHHHHHHHHHHH
T ss_pred CcceEEEEecccccccchHHHHHhcCceEEEEEECH-------HHHHHHHhCCCeeEEc------CCHHHHHHHHHHhhc
Confidence 368899999887511 12233 3445777788998543 458999999999999
Q ss_pred cCcccEEEecCccHHHHHHHHHHHHhcCCCEe--EEcccCC
Q 024322 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA--SNQVNYS 227 (269)
Q Consensus 189 ~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~--~~q~~~n 227 (269)
+|+..+||+-..-.+.++++++. ++.|+ .-|...|
T Consensus 222 ~~~~~SIg~~GN~ad~~~~l~~~----~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 222 KKEPLSIGLLGNAADLWEELVER----GIIPDLVTDQTSAH 258 (546)
T ss_dssp TT--EEEEEES-HHHHHHHHHHT----T---SEE---SSTT
T ss_pred cCCeeEEEEeccHHHHHHHHHHc----CCCCCcccCCCccc
Confidence 99999999999778888888653 55544 4566553
No 127
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=58.95 E-value=62 Score=29.65 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccce---------EEeecCCCCChhHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHH
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAY 209 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDl---------l~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~ 209 (269)
+.++.+.+.+-++. |.+.|+|+|++ -+-+.+...+..+.++.+.+..+.-++..+-+.+. +.+.++.+.
T Consensus 19 ~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~ 97 (333)
T TIGR03217 19 HQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAY 97 (333)
T ss_pred CcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHH
Q ss_pred HHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024322 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
+. .++.+.+-.+.-+-+.... .+++++++|+.+...
T Consensus 98 ~~------gvd~iri~~~~~e~d~~~~-~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 98 DA------GARTVRVATHCTEADVSEQ-HIGMARELGMDTVGF 133 (333)
T ss_pred HC------CCCEEEEEeccchHHHHHH-HHHHHHHcCCeEEEE
No 128
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=58.73 E-value=1.1e+02 Score=28.55 Aligned_cols=112 Identities=22% Similarity=0.194 Sum_probs=63.1
Q ss_pred cccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC
Q 024322 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (269)
Q Consensus 94 tA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~ 173 (269)
..-.||. |+.+-++|++..++++.+-++|.|=+. ...--+.++..+++.-++. .+.++.+|.|..
T Consensus 64 ~d~VfGg---------~~~L~~~i~~~~~~~~P~~i~v~~tC~---~~~iGdDi~~v~~~~~~~~---~~~vi~v~t~gf 128 (410)
T cd01968 64 KDVIFGG---------EKKLYKAILEIIERYHPKAVFVYSTCV---VALIGDDIDAVCKTASEKF---GIPVIPVHSPGF 128 (410)
T ss_pred cceeecc---------HHHHHHHHHHHHHhCCCCEEEEECCCc---hhhhccCHHHHHHHHHHhh---CCCEEEEECCCc
Confidence 3446787 888888888776554355667777664 2333444555555544444 367889998876
Q ss_pred CC-----hhHHHHHHHHHH-H--------cCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 174 WG-----NEGFIDGLGDAV-E--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 174 ~~-----~~~~~~~L~~L~-~--------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
.. .+.++++|.+.. + .+.|--||-.++. ..+.++.+..+..|+++.+
T Consensus 129 ~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 129 VGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred ccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 32 334454544332 1 3567777744442 2234444445556666544
No 129
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=58.46 E-value=62 Score=29.69 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=5.9
Q ss_pred HHHhCCCccce
Q 024322 155 LFRLGLSSVEL 165 (269)
Q Consensus 155 L~~L~~d~iDl 165 (269)
|.+.|+++|.+
T Consensus 34 L~~aGv~~IEv 44 (337)
T PRK08195 34 LDAAGVPVIEV 44 (337)
T ss_pred HHHcCCCEEEe
Confidence 55555555555
No 130
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.40 E-value=1.3e+02 Score=29.15 Aligned_cols=68 Identities=9% Similarity=0.113 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHHcCcccE----EEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCC
Q 024322 175 GNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (269)
Q Consensus 175 ~~~~~~~~L~~L~~~G~ir~----iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 247 (269)
..++..++++.+++.|.... +|+-+-+.+.+++.++.+...+ ++. +.++.+.+.+.. .+.+.+++.+.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~--~~~--~~~~~~tP~PGT-~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWD--PDQ--ANWLMYTPWPFT-SLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcC--CCc--eEEEEecCCCCc-HHHHHHHhhcc
Confidence 46788899999999986433 5566778888888877766543 333 334555555555 47777777653
No 131
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=58.35 E-value=53 Score=27.43 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=26.3
Q ss_pred ccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHH
Q 024322 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 162 ~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i 205 (269)
.+|.++||..+. .+..+.+.+......++.||++++....+
T Consensus 73 ~~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 378889998652 23344444433346899999998765443
No 132
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=58.02 E-value=1.1e+02 Score=26.17 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHC-----CCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 024322 72 RKMKAAKAAFDTSLDN-----GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~-----Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~ 146 (269)
.++++.++.++.+++. |+|---.+..-.+ +..+...++.... |.-+||=++..+
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~---------~~~m~~vl~~l~~---~gl~FvDS~T~~--------- 129 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSD---------REAMRWVLEVLKE---RGLFFVDSRTTP--------- 129 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----------HHHHHHHHHHHHH---TT-EEEE-S--T---------
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCC---------HHHHHHHHHHHHH---cCCEEEeCCCCc---------
Confidence 4678999999999976 5554444444444 7777777776653 567777566532
Q ss_pred HHHHHHHHHHHhCCCc--cceEEeecCCCCChhHHHHH-HHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCC
Q 024322 147 VLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDG-LGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~--iDll~lH~p~~~~~~~~~~~-L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~ 217 (269)
.....+.-+++|+.+ .|+|+=|.++.......++. ....+++|.+-.||=..- +.+.+++.+...+..|+
T Consensus 130 -~s~a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 130 -RSVAPQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGI 203 (213)
T ss_dssp -T-SHHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTE
T ss_pred -ccHHHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCE
Confidence 222445556666542 34443333322222233333 333456787777774432 44556666555555554
No 133
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=57.95 E-value=1.2e+02 Score=25.82 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEe
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~ 220 (269)
.+++...+ +-+.|-+-|+..+.+=+ ...+.++.+++++++..=-.||.-+. +.++++.+++. |-.|.
T Consensus 17 ~~~e~a~~-~~~al~~~Gi~~iEit~-------~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fi 84 (204)
T TIGR01182 17 DDVDDALP-LAKALIEGGLRVLEVTL-------RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFI 84 (204)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEE
Confidence 34554444 34455566765555333 23556777888877644356998887 88898888764 44454
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 221 SNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 221 ~~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
+ +|.. .. +++++|+++||.++.
T Consensus 85 v-----sP~~---~~-~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 V-----SPGL---TP-ELAKHAQDHGIPIIP 106 (204)
T ss_pred E-----CCCC---CH-HHHHHHHHcCCcEEC
Confidence 3 3322 22 599999999998876
No 134
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=57.93 E-value=76 Score=27.70 Aligned_cols=98 Identities=11% Similarity=0.185 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHHHH-HHHcCcccEEEecCc-----cHHHHHHHHHHHHhcCCCEeE
Q 024322 149 AALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGD-AVEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 149 ~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~-L~~~G~ir~iGvS~~-----~~~~i~~~~~~~~~~~~~~~~ 221 (269)
+.++..|+-.| +|||.+=+-|-.. .-++++++..-+ +++.|.--+.| -++ ....+++.++.|+..| |++
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lG--f~~ 87 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELG--FEA 87 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcC--CCE
Confidence 44566666666 6888888877543 222334444333 34445555555 211 1234444445555444 444
Q ss_pred EcccCCccCCCcch-hhHHHHHHHcCCeEE
Q 024322 222 NQVNYSLIYRKPEE-NGVKAACDELGITLI 250 (269)
Q Consensus 222 ~q~~~n~~~~~~~~-~~l~~~~~~~gi~vi 250 (269)
+.+.=..+.-..+. ..+++.++++|+.+.
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 44433333322221 136666666666554
No 135
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=57.81 E-value=72 Score=26.02 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=61.7
Q ss_pred EEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcc----hhhHHHH
Q 024322 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE----ENGVKAA 241 (269)
Q Consensus 166 l~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~~~l~~~ 241 (269)
+++..|.....+++++.-.+--++.-|++|=|.+-+.....++++..+.+ ..++-+.|+.....+. +.++.+.
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~---lkvVvVthh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD---LKVVVVTHHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC---ceEEEEEeecccccCCceecCHHHHHH
Confidence 45667776667778887777777788999999888888888887775432 3344445555443332 2368899
Q ss_pred HHHcCCeEEEcccccCc
Q 024322 242 CDELGITLIAYCPIAQG 258 (269)
Q Consensus 242 ~~~~gi~via~spl~~G 258 (269)
.+++|..|++-|-.-.|
T Consensus 79 L~erGa~v~~~sHalSg 95 (186)
T COG1751 79 LKERGAKVLTQSHALSG 95 (186)
T ss_pred HHHcCceeeeehhhhhc
Confidence 99999999876654433
No 136
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=57.81 E-value=1.4e+02 Score=29.18 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hhHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-----~~~~~~~L~ 184 (269)
++.+-+++.+...+++.+-++|.+=+ .++-+-..++...++++.+ ++++.++.|.... .+.++..|.
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC-------~seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSC-------TAELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCc-------HHHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHH
Confidence 77888888776544323445655554 3444555555555666653 6799999887622 223333322
Q ss_pred -HHHH-----------cCcccEEEecC--c-cHHHHHHHHHHHHhcCCCEeEE
Q 024322 185 -DAVE-----------QGLVKAVGVSN--Y-SEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 185 -~L~~-----------~G~ir~iGvS~--~-~~~~i~~~~~~~~~~~~~~~~~ 222 (269)
.+.+ .+.|--||.++ | +...+.++.+..+..|+++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v 194 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV 194 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 2221 24577888764 2 4455566655566667665443
No 137
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=57.59 E-value=1.3e+02 Score=26.29 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHHcCcccEEEecCc----cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcch-hhHHHHHHHcCCeE
Q 024322 175 GNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITL 249 (269)
Q Consensus 175 ~~~~~~~~L~~L~~~G~ir~iGvS~~----~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~l~~~~~~~gi~v 249 (269)
+.+.+.+..+++.+.| +..|.++.- +++++.++++..++.-..+ -+.+.+|.-+..--- .-.+. +-+.|+.+
T Consensus 141 ~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~-~i~l~~H~Hn~~GlA~An~la-Ai~aG~~~ 217 (268)
T cd07940 141 DLDFLIEVVEAAIEAG-ATTINIPDTVGYLTPEEFGELIKKLKENVPNI-KVPISVHCHNDLGLAVANSLA-AVEAGARQ 217 (268)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEECCCCCCCCHHHHHHHHHHHHHhCCCC-ceeEEEEecCCcchHHHHHHH-HHHhCCCE
Confidence 4556666667777766 667777753 6777777766554321111 123444443322110 01233 33568888
Q ss_pred EEcccccCcccccc
Q 024322 250 IAYCPIAQGELLLF 263 (269)
Q Consensus 250 ia~spl~~G~L~~~ 263 (269)
+--+-.+-|.-+|.
T Consensus 218 iD~s~~GlG~~aGN 231 (268)
T cd07940 218 VECTINGIGERAGN 231 (268)
T ss_pred EEEEeecccccccc
Confidence 87766666655443
No 138
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=57.45 E-value=1.5e+02 Score=26.72 Aligned_cols=115 Identities=12% Similarity=0.017 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCC---CCC--CchHHHHHHHHH---hccCCCCCCcEEEEecCCCCC-----
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRAS---FGA--INSETLLGRFIK---ERKQRDPEVEVTVATKFAALP----- 139 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~---~~~--~~se~~lG~al~---~~~~~~~R~~l~I~tK~~~~~----- 139 (269)
.+|..+++-+..+++|-+.+.|.....+... .+. ...+++...+++ +......+.+++|+.-+++..
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~ 123 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLAD 123 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCC
Confidence 4577788888889999999988765443100 000 011333333332 111100122588888888732
Q ss_pred -------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc
Q 024322 140 -------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 140 -------~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~ 189 (269)
+..+.+.+++...+..+.|--.-+|++++--.. ...|+..+++.+++.
T Consensus 124 ~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~--~~~E~~~~~~~~~~~ 178 (304)
T PRK09485 124 GSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIP--NLDEAEALVELLKEE 178 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccC--CHHHHHHHHHHHHHh
Confidence 124678888888888888855569999997431 234444444444433
No 139
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=57.21 E-value=1.5e+02 Score=26.88 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=45.3
Q ss_pred CcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCccceEEeecCC-------CCChhHHHHHHHHHHHcCcccEEE
Q 024322 127 VEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG-------IWGNEGFIDGLGDAVEQGLVKAVG 196 (269)
Q Consensus 127 ~~l~I~tK~~~~~---~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~-------~~~~~~~~~~L~~L~~~G~ir~iG 196 (269)
+++.|..|+.+.. ...+.+...+ +-+.|+..|+|+|+ +|... +......++.+.++++.=.|.-++
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~~-ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 295 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSVE-LAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA 295 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHHH-HHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE
Confidence 4677888876421 2234443332 23345666765555 34211 111222346667777776677777
Q ss_pred ecCc-cHHHHHHHHHH
Q 024322 197 VSNY-SEKRLRNAYEK 211 (269)
Q Consensus 197 vS~~-~~~~i~~~~~~ 211 (269)
..+. +++.++++++.
T Consensus 296 ~G~i~t~~~a~~~l~~ 311 (336)
T cd02932 296 VGLITDPEQAEAILES 311 (336)
T ss_pred eCCCCCHHHHHHHHHc
Confidence 7776 77778877653
No 140
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=57.15 E-value=1.8e+02 Score=27.74 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHHHHC-CCCEEEcccccCCCCCCCCCchHHHHHHHHH-hccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIK-ERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~-Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~-~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~ 148 (269)
..+.+...+.+...++. +...+ -.|+.... ...=-..+.+.+. ..+.....++|+|++=. .
T Consensus 103 ~fp~~~~~~~~~~~~~~~~~~~~---~~y~~~~G--~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~------------q 165 (459)
T COG1167 103 LFPLEALRRALARVLRNYGASLA---LQYGPTAG--LPELREAIAAYLLARRGISCEPEQIVITSGA------------Q 165 (459)
T ss_pred cCCHHHHHHHHHHHHhhcchhhh---hcCCCCCC--cHHHHHHHHHHHHHhcCCccCcCeEEEeCCH------------H
Confidence 34567777788777753 33321 12333111 0000234444554 33333334577777654 6
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEec----CccHHHHHHHHHHHHhcCCCEeEE--
Q 024322 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS----NYSEKRLRNAYEKLKKRGIPLASN-- 222 (269)
Q Consensus 149 ~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS----~~~~~~i~~~~~~~~~~~~~~~~~-- 222 (269)
.+++-.++-| ++.=|.+.+.+|.. ..++.-++..| ++.++|. +.+++.+++.++. ..+++.++
T Consensus 166 ~al~l~~~~l-~~pGd~v~vE~PtY------~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~~---~~~k~~y~~P 234 (459)
T COG1167 166 QALDLLLRLL-LDPGDTVLVEDPTY------PGALQALEALG-ARVIPVPVDEDGIDPEALEEALAQ---WKPKAVYVTP 234 (459)
T ss_pred HHHHHHHHHh-CCCCCEEEEcCCCc------HHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHhh---cCCcEEEECC
Confidence 6777555555 34568888888764 23333333333 5667765 3466777777543 23444443
Q ss_pred --cccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024322 223 --QVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 223 --q~~~n~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
|++.........+..|+++|+++++-||-=
T Consensus 235 ~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIED 266 (459)
T COG1167 235 TFQNPTGVTMSLERRKALLALAEKYDVLIIED 266 (459)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCeEEee
Confidence 444433333333346899999999988853
No 141
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=57.15 E-value=77 Score=27.70 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=7.2
Q ss_pred HHHhCCCccceEE
Q 024322 155 LFRLGLSSVELYQ 167 (269)
Q Consensus 155 L~~L~~d~iDll~ 167 (269)
|.++|+++|++-+
T Consensus 31 L~~~Gv~~iEvg~ 43 (263)
T cd07943 31 LDAAGVPLIEVGH 43 (263)
T ss_pred HHHcCCCEEEeec
Confidence 5555655555543
No 142
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=56.89 E-value=51 Score=31.04 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHH-HhccCC---CCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI-KERKQR---DPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al-~~~~~~---~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
.+.=.+-++.|++.|-..+-==+..|+ -..+.+.+ +..+.- +|=-+.++-.. ....+.+.+.+.+
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLStGgd---------l~~iR~~il~~s~vpvGTVPiYqa~~~~~--~~~~~mt~d~~~~ 144 (423)
T TIGR00190 76 IEEEVEKALIAIKYGADTVMDLSTGGD---------LDEIRKAILDAVPVPVGTVPIYQAAEKVH--GAVEDMDEDDMFR 144 (423)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccCCCC---------HHHHHHHHHHcCCCCccCccHHHHHHHhc--CChhhCCHHHHHH
Confidence 344445689999999875443334555 44444444 333211 00001100000 0125688999999
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCcc-----------------HHHHHHHHHHH
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS-----------------EKRLRNAYEKL 212 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~-----------------~~~i~~~~~~~ 212 (269)
.+++..+. -+|.+-+|.-- ..+.++.|+++|++- |+-+-. -++++++++++
T Consensus 145 ~ie~qa~d----GVDfmTiH~Gi------~~~~~~~~~~~~R~~--giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~ 212 (423)
T TIGR00190 145 AIEKQAKD----GVDFMTIHAGV------LLEYVERLKRSGRIT--GIVSRGGAILAAWMLHHHKENPLYKNFDYILEIA 212 (423)
T ss_pred HHHHHHHh----CCCEEEEccch------hHHHHHHHHhCCCcc--CeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHH
Confidence 99888874 58899999742 477889999988544 443221 26667777777
Q ss_pred HhcCCCEeEEcccCCccCC--------Ccch---------hhHHHHHHHcCCeEEEccc
Q 024322 213 KKRGIPLASNQVNYSLIYR--------KPEE---------NGVKAACDELGITLIAYCP 254 (269)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~--------~~~~---------~~l~~~~~~~gi~via~sp 254 (269)
++..+ -+|+.+. ..++ .+|.+.|+++||+++.=+|
T Consensus 213 ~~yDV-------tlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGP 264 (423)
T TIGR00190 213 KEYDV-------TLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGP 264 (423)
T ss_pred HHhCe-------eeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 65443 1222221 0011 2578888999999998877
No 143
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=56.82 E-value=1.1e+02 Score=25.25 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCC--CCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC---CCCCCCHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS--FGAINSETLLGRFIKERKQRDPEVEVTVATKFAA---LPWRLGRQSVL 148 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~--~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~---~~~~~~~~~v~ 148 (269)
-+++..+|-.++..|-..+-+ |||.| |..|.+++++|++-++++.- --+-++|-... ...++.+|.|
T Consensus 27 I~~aa~~i~~~l~~G~Kvl~c----GNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v- 98 (176)
T COG0279 27 IERAAQLLVQSLLNGNKVLAC----GNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV- 98 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEE----CCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH-
Confidence 366778888999999998865 66654 35667888889888876532 34555544432 1246777765
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHH
Q 024322 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 149 ~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~ 210 (269)
+.+..+.+|. -=|+|+==.+. .....++++++..|+.|. .-||+++-+...+..+++
T Consensus 99 --FsRqveA~g~-~GDvLigISTS-GNS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~~~~D 155 (176)
T COG0279 99 --FSRQVEALGQ-PGDVLIGISTS-GNSKNVLKAIEAAKEKGM-TVIALTGKDGGKLAGLLD 155 (176)
T ss_pred --HHHHHHhcCC-CCCEEEEEeCC-CCCHHHHHHHHHHHHcCC-EEEEEecCCCcccccccc
Confidence 4455556664 24655544432 246789999999999985 679999888777777753
No 144
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=56.40 E-value=1.2e+02 Score=27.79 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.+++.+.++.+.+.|+..+..--.||- ...+.+.+++.++
T Consensus 132 ~~~~~~~ai~~lr~~g~~~v~iDli~Gl---------------------------------------Pgqt~~~~~~~l~ 172 (350)
T PRK08446 132 SQKQIIKAIENAKKAGFENISIDLIYDT---------------------------------------PLDNKKLLKEELK 172 (350)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEe-ecCCC---------CChhHHHHHHHHHHHcCcccEEEecCcc
Q 024322 153 DSLFRLGLSSVELYQL-HWAGI---------WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 153 ~sL~~L~~d~iDll~l-H~p~~---------~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (269)
..++ |+.+++.++.+ +.|+. .+.++.+....+..++-=-..+++|||.
T Consensus 173 ~~~~-l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa 230 (350)
T PRK08446 173 LAKE-LPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFG 230 (350)
T ss_pred HHHh-cCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhh
No 145
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=56.20 E-value=72 Score=30.52 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=61.9
Q ss_pred cccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCCCC
Q 024322 96 EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIW 174 (269)
Q Consensus 96 ~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~-~d~iDll~lH~p~~~ 174 (269)
-.||. ++.+-++|++...+++.+=++|.|=+- ...--+.+...+++.-++.. ...+.++.++.|+..
T Consensus 72 ~VfGg---------~~~L~~aI~~~~~~~~P~~I~V~ttC~---~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~ 139 (455)
T PRK14476 72 TILGG---------DENVEEAILNICKKAKPKIIGLCTTGL---TETRGDDVAGALKEIRARHPELADTPIVYVSTPDFK 139 (455)
T ss_pred eEeCC---------HHHHHHHHHHHHHhhCCCEEEEeCcch---HhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCC
Confidence 46787 888888888775444345566665552 22223334444444333321 113678889998873
Q ss_pred C-----hhHHHHHHHH-HH--------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEe
Q 024322 175 G-----NEGFIDGLGD-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 175 ~-----~~~~~~~L~~-L~--------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (269)
. .+.++.+|.+ +. +.++|--||-+++.+..++++.+..+..|+++.
T Consensus 140 g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 140 GALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPI 199 (455)
T ss_pred CcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceE
Confidence 2 2334434322 22 235577887555544455555555666676653
No 146
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=56.07 E-value=4.2 Score=37.70 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=36.0
Q ss_pred cCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024322 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 189 ~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (269)
-|+||++||--++.+++.++.+.-+ .-+..+.+..++....+. .+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP~DP-~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDPHDP-AVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCCCCH-HHHHHHHHcCCc
Confidence 4999999999999999999876422 122233333333222222 488888888875
No 147
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=55.99 E-value=2.2e+02 Score=28.38 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCC---C-CCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCC-----CCC
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASF---G-AINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-----RLG 143 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~---~-~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~-----~~~ 143 (269)
.++..+++=+.++++|-+.+.|.....+.... + .+..+++...+.+-...-. ..+++|+.-+|++.. ..+
T Consensus 41 ~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~-~~~~~VagsiGP~g~~~~~~~~~ 119 (612)
T PRK08645 41 HPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAA-GDDVYVAGTIGPIGGRGPLGDIS 119 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHh-cCCCeEEEeCCCCCCCCCCCCCC
Confidence 34888888888899999999987665541100 0 0113444444444221111 135788888887432 256
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G 190 (269)
.+.+++...+..+.|.-.-+|++++--.. ...|+..+++.+++.+
T Consensus 120 ~~~~~~~~~~~~~~l~~~gvD~l~~ET~~--~~~Ea~a~~~a~~~~~ 164 (612)
T PRK08645 120 LEEIRREFREQIDALLEEGVDGLLLETFY--DLEELLLALEAAREKT 164 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEccC--CHHHHHHHHHHHHHhC
Confidence 78888888888888855669999998532 2344444444444443
No 148
>PLN00191 enolase
Probab=55.89 E-value=67 Score=30.88 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEE-ec-CccHHHHHHHHHHHHhcCCCE
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG-VS-NYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iG-vS-~~~~~~i~~~~~~~~~~~~~~ 219 (269)
.+++.+.+-+...+++ .++.+|-.|-. ++-|+.+.+|.++.++.-+| =+ ..+++.++++++. --.
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~---~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aa 361 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFD---QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KAC 361 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCC---cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCC
Confidence 3555555555554433 45677777643 34477777888888887777 11 2467888888765 236
Q ss_pred eEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024322 220 ASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
+++++..|-+-.-.+..++++.|+++|+.++.-
T Consensus 362 d~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 362 NALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred CEEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 666766665443333336899999999999764
No 149
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.68 E-value=1.7e+02 Score=26.97 Aligned_cols=138 Identities=13% Similarity=0.113 Sum_probs=81.0
Q ss_pred HHHHHHHHhccCC--CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCCC------------CC
Q 024322 111 TLLGRFIKERKQR--DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGI------------WG 175 (269)
Q Consensus 111 ~~lG~al~~~~~~--~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~-~d~iDll~lH~p~~------------~~ 175 (269)
..+-++++..... .....+.|+| +|. .+.+++-.+.-+++|+ .+....+-||.++. ++
T Consensus 165 ~~v~~~i~~l~~~~~i~~r~itvST-~G~------~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~ 237 (345)
T PRK14457 165 DEVLAAIRCLNQDLGIGQRRITVST-VGV------PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYP 237 (345)
T ss_pred HHHHHHHHHHhcccCCccCceEEEC-CCc------hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCC
Confidence 4455666554210 0123566666 321 1223333333333332 34557788998765 23
Q ss_pred hhHHHHHHHH-HHHcCc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCc----chh---hHHHHH
Q 024322 176 NEGFIDGLGD-AVEQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EEN---GVKAAC 242 (269)
Q Consensus 176 ~~~~~~~L~~-L~~~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~~---~l~~~~ 242 (269)
.+++++++.+ +.+.|+ |+++=+.++ +.+.++++.+.++. ++..++-++||++.... ..+ .+.+..
T Consensus 238 l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~--l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 315 (345)
T PRK14457 238 IENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRG--FQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVL 315 (345)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhc--CCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 5677777755 455563 455555544 67888888887654 34578889999875422 221 356677
Q ss_pred HHcCCeEEEcccccC
Q 024322 243 DELGITLIAYCPIAQ 257 (269)
Q Consensus 243 ~~~gi~via~spl~~ 257 (269)
+++|+.+......+.
T Consensus 316 ~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 316 EQRGVAVSVRASRGL 330 (345)
T ss_pred HHCCCeEEEeCCCCC
Confidence 788999998887754
No 150
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=55.30 E-value=59 Score=25.89 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=44.0
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC-CChhHHHHHHHHHHHc
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~--~d~iDll~lH~p~~-~~~~~~~~~L~~L~~~ 189 (269)
|--+.|+-|++ ....+..+++.+.++++.+. +...|++++..+.. .+..+....|..+.++
T Consensus 47 RlG~sVSKKvg---~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFG---KAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEecccc---cchhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 66788888886 46788899999999998773 45789999998764 3445555555444433
No 151
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.90 E-value=1.7e+02 Score=26.67 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~s 154 (269)
++..+.+..+.+.|++.|=.-- +.... .+.+ +++++.. + ++-|.-=.. ..++.+..+ .
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~---g--~~~l~lDaN---~~~~~~~a~-----~ 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF---P--DIPLMADAN---SAYTLADIP-----L 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC---C--CCeEEEECC---CCCCHHHHH-----H
Confidence 5667778888899998774311 11110 2333 3333322 1 222222211 234444432 2
Q ss_pred HHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCc-ccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCc
Q 024322 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (269)
Q Consensus 155 L~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~-ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (269)
+++| +..++.++..|-. .+-++.+.+|+++-. =-+.|=|-++...+..+++. --.+++|+..+.+-.-.
T Consensus 197 ~~~l--~~~~i~~iEeP~~---~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit 266 (354)
T cd03317 197 LKRL--DEYGLLMIEQPLA---ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLT 266 (354)
T ss_pred HHHh--hcCCccEEECCCC---hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHH
Confidence 3444 2346667776643 333667777776633 34667777888888888654 24778888766543322
Q ss_pred chhhHHHHHHHcCCeEEEcccccC
Q 024322 234 EENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 234 ~~~~l~~~~~~~gi~via~spl~~ 257 (269)
+-..+..+|+.+|+.++..+....
T Consensus 267 ~~~~i~~~A~~~gi~~~~g~~~es 290 (354)
T cd03317 267 EALKIHDLCQEHGIPVWCGGMLES 290 (354)
T ss_pred HHHHHHHHHHHcCCcEEecCcccc
Confidence 222589999999999987655433
No 152
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=54.52 E-value=1.6e+02 Score=26.17 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=44.9
Q ss_pred hCCCccceEEeecCC---------CCChhHHHHHHHH----HHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcc
Q 024322 158 LGLSSVELYQLHWAG---------IWGNEGFIDGLGD----AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 158 L~~d~iDll~lH~p~---------~~~~~~~~~~L~~----L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~ 224 (269)
+.++.||.+++---| .....++.+++++ .++.|| .+|+...+.+..++.++ .|+++.++..
T Consensus 165 ~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~----~G~~~v~~g~ 238 (267)
T PRK10128 165 LDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLA----WGANFVAVGV 238 (267)
T ss_pred hCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHH----cCCcEEEECh
Confidence 356889999886322 2334556555544 577787 46876667877777754 3678888777
Q ss_pred cCCccCC
Q 024322 225 NYSLIYR 231 (269)
Q Consensus 225 ~~n~~~~ 231 (269)
...++.+
T Consensus 239 D~~~l~~ 245 (267)
T PRK10128 239 DTMLYTD 245 (267)
T ss_pred HHHHHHH
Confidence 7766644
No 153
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=54.44 E-value=63 Score=30.55 Aligned_cols=84 Identities=7% Similarity=-0.060 Sum_probs=56.6
Q ss_pred EeecCCCCC-hhHHHHHHHHHHHc------CcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHH
Q 024322 167 QLHWAGIWG-NEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVK 239 (269)
Q Consensus 167 ~lH~p~~~~-~~~~~~~L~~L~~~------G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~ 239 (269)
+|..|-... .++-++.|.+|+++ ..--..+-+-++.+.+.++++. --.+++|+..+-+-.-.+...+.
T Consensus 267 ~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~kia 341 (408)
T TIGR01502 267 RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIARAI 341 (408)
T ss_pred EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHHHHH
Confidence 666665322 23557777777765 3344556666788888888764 34788888776644322223589
Q ss_pred HHHHHcCCeEEEcccc
Q 024322 240 AACDELGITLIAYCPI 255 (269)
Q Consensus 240 ~~~~~~gi~via~spl 255 (269)
++|+++||.++..+..
T Consensus 342 ~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 342 MYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHcCCEEEEeCCC
Confidence 9999999999997765
No 154
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=54.29 E-value=1.6e+02 Score=26.37 Aligned_cols=186 Identities=12% Similarity=0.101 Sum_probs=91.6
Q ss_pred cceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHH-CCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCc
Q 024322 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVE 128 (269)
Q Consensus 50 ~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~-~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~ 128 (269)
.|.+|.|.-.. +. ....+.++..+.+...++ .|++.+|--..|+.-.. . .+-..+-++|+...... ..
T Consensus 71 iiS~GG~~g~~---~~---~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d-~--~~~~~~~~al~~Lq~~~--p~ 139 (294)
T cd06543 71 IVSFGGASGTP---LA---TSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTD-T--AAIDRRAQALALLQKEY--PD 139 (294)
T ss_pred EEEecCCCCCc---cc---cCcccHHHHHHHHHHHHHHhCCCeEEEeccCCcccc-c--hhHHHHHHHHHHHHHHC--CC
Confidence 45677775322 11 123445666666666664 49999998777654211 0 11366777887765433 24
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC---CC-hhHHHHHHHHHHHcCcccEEEecCccH
Q 024322 129 VTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI---WG-NEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 129 l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~--~d~iDll~lH~p~~---~~-~~~~~~~L~~L~~~G~ir~iGvS~~~~ 202 (269)
+.|+.-+...+..++++.+ .+-+..+..| +|+|.++-+..-.. .+ -..+..+.+.++.+=+--+=+ ++.
T Consensus 140 l~vs~Tlp~~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~ 214 (294)
T cd06543 140 LKISFTLPVLPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSD 214 (294)
T ss_pred cEEEEecCCCCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCH
Confidence 5454444333344554432 2333344444 45666666654332 12 345566666665551111111 222
Q ss_pred HHHHHHHHHHHhcCCCEeEEcccCC--ccCCCcchhhHHHHHHHcCCeEEEcccccCc
Q 024322 203 KRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~l~~~~~~~gi~via~spl~~G 258 (269)
.++-.. .|+-|.+=++... .+..... ..+.+|++++||+.+.+=.+.+-
T Consensus 215 ~~~~~~------ig~TpMiG~nD~~~e~ft~~da-~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 215 AELWAM------IGVTPMIGVNDVGSEVFTLADA-QTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHHHHH------ccccccccccCCCCceeeHHHH-HHHHHHHHhCCCCeEeeeeccCC
Confidence 222222 1233333332221 1111111 25888899999988887666543
No 155
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=54.07 E-value=1.1e+02 Score=27.23 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHcCc-ccEEEecCccH---HHHHHHHHHHHhcCCC-EeEEcccCCccCCCcc-hhhHHHHHHHcCCeEE
Q 024322 177 EGFIDGLGDAVEQGL-VKAVGVSNYSE---KRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPE-ENGVKAACDELGITLI 250 (269)
Q Consensus 177 ~~~~~~L~~L~~~G~-ir~iGvS~~~~---~~i~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~-~~~l~~~~~~~gi~vi 250 (269)
+.+++.+++.++++. |-.+=++-+|+ .-++++++.+++.|+. +-+ -+...+ .+++.+.|+++||..|
T Consensus 79 ~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv-------pDLP~ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 79 EDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV-------PDLPPEESDELLKAAEKHGIDPI 151 (265)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe-------CCCChHHHHHHHHHHHHcCCcEE
Confidence 456666777776643 33333333343 3345555555555543 221 111122 2358999999999888
Q ss_pred Ecccc
Q 024322 251 AYCPI 255 (269)
Q Consensus 251 a~spl 255 (269)
-..+-
T Consensus 152 ~lvaP 156 (265)
T COG0159 152 FLVAP 156 (265)
T ss_pred EEeCC
Confidence 66543
No 156
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=53.73 E-value=1.3e+02 Score=27.04 Aligned_cols=174 Identities=13% Similarity=0.054 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCC-------CCCCcEEEEecCCCC--------
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQR-------DPEVEVTVATKFAAL-------- 138 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~-------~~R~~l~I~tK~~~~-------- 138 (269)
+|..+++-..++++|-+.++|+..=-....+....+++-+.+.++...+. .-++...|..-+|++
T Consensus 42 peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~Ey 121 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADEY 121 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChhh
Confidence 58888899999999999999864322211100011233333333322110 013444566666652
Q ss_pred --CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHHHHHHHcCcccEEEecCc------cHHHHHHHH
Q 024322 139 --PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNY------SEKRLRNAY 209 (269)
Q Consensus 139 --~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~L~~~G~ir~iGvS~~------~~~~i~~~~ 209 (269)
.+..+.+.+.+=.+.-++.|.-.-+|++.+.-... ...+.+.+.+++. +|=-.|+++-. +...+.++.
T Consensus 122 ~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~eaa 198 (300)
T COG2040 122 RGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEAA 198 (300)
T ss_pred cCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHHH
Confidence 13344554544455566666666699998876322 2233344444444 88788888854 235566676
Q ss_pred HHHHhcCCCEeEEcccCCccCCCcchhhHHHHH--HHcCCeEEEccc
Q 024322 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC--DELGITLIAYCP 254 (269)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~--~~~gi~via~sp 254 (269)
...+.. -.+..+.+++.-.++ .. .+++.. ..-++++++|--
T Consensus 199 ~~~~~~-~~iaa~gvNC~~p~~--~~-a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 199 AILAGL-PNIAALGVNCCHPDH--IP-AAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHhcC-cchhheeeccCChhh--hH-HHHHHHHhcCCCCceEEcCC
Confidence 664422 124555555544333 22 366766 334888888854
No 157
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=53.70 E-value=24 Score=32.20 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCcccEEEecCcc-------HHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHH
Q 024322 179 FIDGLGDAVEQGLVKAVGVSNYS-------EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 244 (269)
Q Consensus 179 ~~~~L~~L~~~G~ir~iGvS~~~-------~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~ 244 (269)
+-+++++++++|.-|.+-+|-+. ...+..+....++++...++ .++++++|+.+.+++....+
T Consensus 142 TEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~---~wsiIdrW~t~~glIkafA~ 211 (395)
T KOG1321|consen 142 TEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDI---KWSIIDRWPTREGLIKAFAE 211 (395)
T ss_pred cHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccCC---ceEeeccccccchHHHHHHH
Confidence 45788999999999999988542 34566666666666655544 78899999888766655444
No 158
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.57 E-value=1.3e+02 Score=27.77 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=59.3
Q ss_pred EEeecCCC------------CChhHHHHHHHHHHHcC--c--ccEEEec--CccHHHHHHHHHHHHhcCCCEeEEcccCC
Q 024322 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 166 l~lH~p~~------------~~~~~~~~~L~~L~~~G--~--ir~iGvS--~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (269)
+-+|.++. .+.+++++++.+..+.+ + ++++=+. |-+.+.++++.+.++.. +..++-++||
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnlIPyn 288 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNLIPFN 288 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEEEecC
Confidence 56787754 22467777777766653 2 2344444 44668899988887643 4567779999
Q ss_pred ccCCC----cchh---hHHHHHHHcCCeEEEcccccC
Q 024322 228 LIYRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 228 ~~~~~----~~~~---~l~~~~~~~gi~via~spl~~ 257 (269)
++... +..+ .+.+..+++||.+....+.+.
T Consensus 289 ~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 289 EHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 87532 1111 356778889999999987754
No 159
>COG0218 Predicted GTPase [General function prediction only]
Probab=53.53 E-value=1.4e+02 Score=25.35 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHC------CCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 024322 73 KMKAAKAAFDTSLDN------GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~------Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~ 146 (269)
-.++..+.+...++. .+-.+|.-..-- ..+..+=++|.... ..-+++.||. ...+...
T Consensus 89 ~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--------~~D~em~~~l~~~~----i~~~vv~tK~----DKi~~~~ 152 (200)
T COG0218 89 VKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--------DLDREMIEFLLELG----IPVIVVLTKA----DKLKKSE 152 (200)
T ss_pred HHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--------HHHHHHHHHHHHcC----CCeEEEEEcc----ccCChhH
Confidence 457777888877755 344677532222 13778889998887 4688999999 6788888
Q ss_pred HHHHHHHHHHHhCCCccce--EEeec-CCCCChhHHHHHHHHHHHc
Q 024322 147 VLAALKDSLFRLGLSSVEL--YQLHW-AGIWGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDl--l~lH~-p~~~~~~~~~~~L~~L~~~ 189 (269)
..+.+....++|+.+..|- +++.. ....+.++.+..+.+...+
T Consensus 153 ~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 153 RNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 8899999999998887775 33333 2225577777777666543
No 160
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.44 E-value=73 Score=27.01 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEeE
Q 024322 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 143 ~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~ 221 (269)
+++...+.+ +.|-+-|+..+.+=+ ...+..+.+++++++..=-.||.-+. +.++++++++. |-.|.+
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~-------~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv 81 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITL-------RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV 81 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE
Confidence 444444433 344455655444322 23456777777776643356888886 88888888664 444544
Q ss_pred EcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 222 ~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
+|. ... +++++|++++|.++.
T Consensus 82 -----SP~---~~~-~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 -----SPG---TTQ-ELLAAANDSDVPLLP 102 (201)
T ss_pred -----CCC---CCH-HHHHHHHHcCCCEeC
Confidence 332 222 599999999998874
No 161
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=53.26 E-value=2e+02 Score=27.04 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=58.3
Q ss_pred ccceEEeecCCC------CChhHHHHHHHHHHHc-CcccEEEec---CccHHHHHHHHHHHHhcCCCEeEEcccCCccCC
Q 024322 162 SVELYQLHWAGI------WGNEGFIDGLGDAVEQ-GLVKAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 162 ~iDll~lH~p~~------~~~~~~~~~L~~L~~~-G~ir~iGvS---~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (269)
.+|++.||.-.. .+.+++.+.+++..+. +.---|+=| ..+++.++.+++.+. |-++-++-.....
T Consensus 153 ~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~--G~kpLL~SAt~e~--- 227 (389)
T TIGR00381 153 GADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAE--GERCLLASANLDL--- 227 (389)
T ss_pred CCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhC--CCCcEEEecCchh---
Confidence 378888886432 2245677777776443 433344433 458899999988754 2245544333321
Q ss_pred CcchhhHHHHHHHcCCeEEEcccccCccc
Q 024322 232 KPEENGVKAACDELGITLIAYCPIAQGEL 260 (269)
Q Consensus 232 ~~~~~~l~~~~~~~gi~via~spl~~G~L 260 (269)
... .+.+.|+++|..+++++|..-+.+
T Consensus 228 -Ny~-~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 228 -DYE-KIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred -hHH-HHHHHHHHhCCeEEEEcCCcHHHH
Confidence 112 589999999999999998876554
No 162
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=53.25 E-value=45 Score=31.90 Aligned_cols=102 Identities=10% Similarity=-0.011 Sum_probs=64.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCC-HHHHH------HHH--HHHHHHhCCCccceEEeecCCCCChhHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLG-RQSVL------AAL--KDSLFRLGLSSVELYQLHWAGIWGNEGFI 180 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~-~~~v~------~~v--~~sL~~L~~d~iDll~lH~p~~~~~~~~~ 180 (269)
|.++.-+-+.+... -+.+++++.-++..-.... .-.+- -.| .+.-+||.+.|+|.. ..+.+|++
T Consensus 151 eT~~~~~r~h~~gd-L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~------a~~ldeAl 223 (561)
T COG2987 151 ETFAEAGRQHFGGD-LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI------AETLDEAL 223 (561)
T ss_pred HHHHHHHHHhcCCC-ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh------cCCHHHHH
Confidence 34444333433322 2688999988875211000 00010 011 233378888999832 14578999
Q ss_pred HHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEE
Q 024322 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 181 ~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (269)
...++..++|+-.+||+-..-.+.+.++++. +++|+++
T Consensus 224 ~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r----~~~pD~v 261 (561)
T COG2987 224 ALAEEATAAGEPISIGLLGNAAEILPELLRR----GIRPDLV 261 (561)
T ss_pred HHHHHHHhcCCceEEEEeccHHHHHHHHHHc----CCCCcee
Confidence 9999999999999999999878888888654 6777776
No 163
>PRK05660 HemN family oxidoreductase; Provisional
Probab=53.10 E-value=1.9e+02 Score=26.78 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHcCcc-----cEEEecCccHHHHHHHHHHHHhcC
Q 024322 176 NEGFIDGLGDAVEQGLV-----KAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~i-----r~iGvS~~~~~~i~~~~~~~~~~~ 216 (269)
.++++++++.+++.|.- --+|+...+.+.+++-++.+...+
T Consensus 142 ~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~ 187 (378)
T PRK05660 142 PDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALN 187 (378)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcC
Confidence 45555566666655531 123444445555555554444333
No 164
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=53.01 E-value=30 Score=33.92 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024322 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~ 257 (269)
..+++.++.+++.++++.+.-+.|.. +.+.+...+.++|+++|+.++....++.
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~ 412 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAK 412 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 55777888888888887776666643 3333333589999999999984444443
No 165
>PRK00077 eno enolase; Provisional
Probab=52.85 E-value=92 Score=29.54 Aligned_cols=96 Identities=18% Similarity=0.089 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC--cccEEEecC--ccHHHHHHHHHHHHhcCCC
Q 024322 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN--YSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 143 ~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G--~ir~iGvS~--~~~~~i~~~~~~~~~~~~~ 218 (269)
+++...+.+.+.+++ .++.+|-.|-. .+-|+.+.+|.++- ++.-+|=-. .+.+.++++++. --
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~---~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a 328 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLD---ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GA 328 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCC---CccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CC
Confidence 555555555555554 45677777653 22366666666663 555444332 368888888764 24
Q ss_pred EeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
.+++|+..+-+-.-.+..++..+|+++|+.++.
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 677777776554322333589999999997654
No 166
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=52.79 E-value=99 Score=29.31 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC--cccEEEecCc--cHHHHHHHHHHHHhcCCC
Q 024322 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSNY--SEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 143 ~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G--~ir~iGvS~~--~~~~i~~~~~~~~~~~~~ 218 (269)
+++...+-+++.+++ .++.+|-.|-. .+-|+.+.+|.+.- .+.-+|=-.+ +.+.++++++. --
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~---~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a 329 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLS---EEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GV 329 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCC---cccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CC
Confidence 344444444444433 46677777654 23366666666653 5554442222 58888888764 24
Q ss_pred EeEEcccCCccCCCcchhhHHHHHHHcCCeEE-Ecc
Q 024322 219 LASNQVNYSLIYRKPEENGVKAACDELGITLI-AYC 253 (269)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~vi-a~s 253 (269)
.+++|+..+-+-.-.+..++.+.|+++|+.++ .+.
T Consensus 330 ~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~ 365 (425)
T TIGR01060 330 ANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHR 365 (425)
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 67777777655432233358999999999855 444
No 167
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=52.69 E-value=1.4e+02 Score=28.41 Aligned_cols=103 Identities=22% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hhHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-----~~~~~~~L~ 184 (269)
|+.+-++|.+...+++.+-++|.|=+- ...--+.++..+++.-++.+ +.++.++.|+... .+.++++|.
T Consensus 106 ~~kL~~~I~e~~~~~~P~~I~V~ttC~---~~lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 179 (456)
T TIGR01283 106 EKKLFHAIREIVERYHPPAVFVYSTCV---PGLIGDDLEAVCKAAAEKTG---IPVIPVDSEGFYGSKNLGNKLACDALL 179 (456)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCh---HHHhcCCHHHHHHHHHHHhC---CCEEEEECCCCccchhHHHHHHHHHHH
Confidence 888888888776554456677777664 23334445555555544544 6788999887622 334455544
Q ss_pred HHH-H------------cCcccEEEecCc--cHHHHHHHHHHHHhcCCCEeE
Q 024322 185 DAV-E------------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 185 ~L~-~------------~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~ 221 (269)
+.. + .+.|--||-.+. +.+.|+++ .+..|+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~l---L~~~Gl~v~~ 228 (456)
T TIGR01283 180 KHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPL---LEKLGIRVLA 228 (456)
T ss_pred HHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHH---HHHcCCeEEE
Confidence 332 1 356777885443 33455555 4455665543
No 168
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=52.65 E-value=2e+02 Score=26.91 Aligned_cols=16 Identities=31% Similarity=0.225 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhcCCCE
Q 024322 204 RLRNAYEKLKKRGIPL 219 (269)
Q Consensus 204 ~i~~~~~~~~~~~~~~ 219 (269)
.++++.+.+++.++.+
T Consensus 163 dl~~I~~la~~~gi~v 178 (405)
T PRK08776 163 DLRFVIEAAHKVGALT 178 (405)
T ss_pred CHHHHHHHHHHcCCEE
Confidence 3444444444444433
No 169
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=52.61 E-value=1.6e+02 Score=25.81 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEE-eecCCC--CChhHHHH----HHHHHHHcCcccEEEecCccHHHHHHHHHHHHh
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNEGFID----GLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~-lH~p~~--~~~~~~~~----~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~ 214 (269)
.+.+.+.+..++.+ +-|-|+||+=. --+|+. .+.++-++ .++.+++.-.+. |.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 45555555555544 44889999753 334544 23333333 456666653443 88999999999999875
Q ss_pred cCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
| ..-+|=+ +....+ ..+++.++++|..++.+-.
T Consensus 96 -G-~~iINdi--sg~~~~---~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 96 -G-ADIINDV--SGGSDD---PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred -C-CCEEEeC--CCCCCC---hHHHHHHHHcCCCEEEECC
Confidence 3 2333322 222211 2589999999999999643
No 170
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=52.56 E-value=1.9e+02 Score=26.64 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=62.5
Q ss_pred CccceEE-eecCCC------------CChhHHHHHHHHHHH-cCc---ccEEEec--CccHHHHHHHHHHHHhc---CCC
Q 024322 161 SSVELYQ-LHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKR---GIP 218 (269)
Q Consensus 161 d~iDll~-lH~p~~------------~~~~~~~~~L~~L~~-~G~---ir~iGvS--~~~~~~i~~~~~~~~~~---~~~ 218 (269)
.++||.+ ||.++. .+.+++++++.+..+ .|. |+++=+. |-+.+.++++.+.++.. +..
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 3577754 677643 235566666655544 343 3344444 44678899998887754 224
Q ss_pred EeEEcccCCccCCCc------ch---hhHHHHHHHcCCeEEEcccccCc
Q 024322 219 LASNQVNYSLIYRKP------EE---NGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 219 ~~~~q~~~n~~~~~~------~~---~~l~~~~~~~gi~via~spl~~G 258 (269)
..++-++||++.... .. ..+.+..+++|+.+......+.-
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 331 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSD 331 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 678889999875321 11 14677888889999988887543
No 171
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=52.56 E-value=90 Score=29.92 Aligned_cols=115 Identities=10% Similarity=0.064 Sum_probs=65.2
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC----ccceEEee
Q 024322 95 AEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQLH 169 (269)
Q Consensus 95 A~~Yg~g~~~~~~~se~~lG~al~~~~~~~~-R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d----~iDll~lH 169 (269)
.-.||. |+-+-++|++...+++ .+=++|.|=+. ...--|.+...+++.-+++.-+ .+.++.+|
T Consensus 68 dvVfGG---------~~kL~~aI~~~~~~~~~p~~I~V~ttC~---~eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~ 135 (457)
T TIGR02932 68 SAVFGG---------AKRIEEGVLTLARRYPNLRVIPIITTCS---TETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVH 135 (457)
T ss_pred ceEECc---------HHHHHHHHHHHHHhCCCCCEEEEECCch---HHhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEee
Confidence 356887 8899999988765542 24466666653 2334444555555543333222 37889999
Q ss_pred cCCCCC-----hhHHHHHHH-HHHH-----cCcccEEEecCccHHHHHHHHHHHHhcCCCEeEE
Q 024322 170 WAGIWG-----NEGFIDGLG-DAVE-----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 170 ~p~~~~-----~~~~~~~L~-~L~~-----~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (269)
.|+... .+.++++|. .+.+ +++|--||-.+ ++..++++.+..+..|+++.++
T Consensus 136 tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 136 TPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred CCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEEE
Confidence 998743 344454443 3322 35576775432 3444555555566667665543
No 172
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=52.56 E-value=67 Score=30.39 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHH-HhccCC---CCCCcEEEEe--cCCCCCCCCCHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI-KERKQR---DPEVEVTVAT--KFAALPWRLGRQSV 147 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al-~~~~~~---~~R~~l~I~t--K~~~~~~~~~~~~v 147 (269)
.+.=.+-++.|++.|-..+-==+..|+ -..+.+.+ +..+.- +|=-+.++-. |-+ ...+.+.+.+
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLStggd---------l~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~-~~~~mt~d~~ 145 (431)
T PRK13352 76 IEEELEKAKVAVKYGADTIMDLSTGGD---------LDEIRRAIIEASPVPVGTVPIYQAAVEAARKYG-SVVDMTEDDL 145 (431)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccCCCC---------HHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCC-ChhhCCHHHH
Confidence 344445689999999875443334455 44444444 333211 0000001000 101 1257889999
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCcc-----------------HHHHHHHHH
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS-----------------EKRLRNAYE 210 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~-----------------~~~i~~~~~ 210 (269)
.+.+++..+. =+|.+-+|.-- ..+.++.++++|++ .|+-+-. -++++++++
T Consensus 146 ~~~ie~qa~~----GVDfmTiHcGi------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLe 213 (431)
T PRK13352 146 FDVIEKQAKD----GVDFMTIHCGV------TRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLE 213 (431)
T ss_pred HHHHHHHHHh----CCCEEEEccch------hHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcCCcCchHHHHHHHHH
Confidence 9999988874 58999999742 47788899998854 4443321 256666777
Q ss_pred HHHhcCCCEeEEcccCCc---cCCCcc--------hhhHHHHHHHcCCeEEEccc
Q 024322 211 KLKKRGIPLASNQVNYSL---IYRKPE--------ENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 211 ~~~~~~~~~~~~q~~~n~---~~~~~~--------~~~l~~~~~~~gi~via~sp 254 (269)
++++..+-++. ---+.| .+.... ..+|.+.|+++||+++.=+|
T Consensus 214 I~~~yDVtlSL-GDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEGP 267 (431)
T PRK13352 214 ILKEYDVTLSL-GDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEGP 267 (431)
T ss_pred HHHHhCeeeec-cCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 66654431111 000111 110000 02577788888888887665
No 173
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=52.40 E-value=1.9e+02 Score=26.58 Aligned_cols=129 Identities=9% Similarity=0.016 Sum_probs=74.3
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
...+.++..++++.+.+.|+..|... | |+.. + ..-+-+.++..... .-.+.|+|-. .-.+.+.+
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~~~---G-GEPl-l---~~~~~~il~~~~~~--g~~~~i~TNG----~ll~~~~~-- 107 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLHFS---G-GEPL-L---RKDLEELVAHAREL--GLYTNLITSG----VGLTEARL-- 107 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEE---C-CccC-C---chhHHHHHHHHHHc--CCcEEEECCC----ccCCHHHH--
Confidence 34677899999999999999887642 3 2110 0 01122333322211 1245667765 33444433
Q ss_pred HHHHHHHHhCCCccceEEeecCCC---------C-ChhHHHHHHHHHHHcCccc--EEEecCccHHHHHHHHHHHHhcCC
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGI---------W-GNEGFIDGLGDAVEQGLVK--AVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~---------~-~~~~~~~~L~~L~~~G~ir--~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
+.|++.|+++|- +-|+.++. . ..+.+++.++.|++.|.-- .+-++..+.+++.++++.+.+.|+
T Consensus 108 ---~~L~~~g~~~v~-iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv 183 (378)
T PRK05301 108 ---AALKDAGLDHIQ-LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGA 183 (378)
T ss_pred ---HHHHHcCCCEEE-EEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCC
Confidence 235555655432 23333321 1 2567888999999988421 223456688999999999888886
Q ss_pred C
Q 024322 218 P 218 (269)
Q Consensus 218 ~ 218 (269)
+
T Consensus 184 ~ 184 (378)
T PRK05301 184 D 184 (378)
T ss_pred C
Confidence 5
No 174
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=52.36 E-value=1.6e+02 Score=25.81 Aligned_cols=107 Identities=9% Similarity=-0.113 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCC
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
..++.+.-.+-.+-..+-+++++|-|=.+..+.. .+..+++++-++|+++|.+- +=+++-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4577777777777778888999888888877765 55889999999999999754 33455566676666553
Q ss_pred CEeEEcccCCccCCCcc--hhhHHHHHHH-cCCeEEEcc
Q 024322 218 PLASNQVNYSLIYRKPE--ENGVKAACDE-LGITLIAYC 253 (269)
Q Consensus 218 ~~~~~q~~~n~~~~~~~--~~~l~~~~~~-~gi~via~s 253 (269)
.+++++--=+++..+.. ..++++..++ .++.||+-.
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~eg 182 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDA 182 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeC
Confidence 34444331222222111 1135555555 478887643
No 175
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=52.31 E-value=77 Score=27.53 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHH
Q 024322 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~ 213 (269)
..++.+.|+.|+++|..-.| +||.+...+...++...
T Consensus 103 ~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~ 139 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAA 139 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHh
Confidence 45678889999999864444 56666666666665443
No 176
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=52.24 E-value=2.1e+02 Score=27.00 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=58.0
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------hhHHHHH
Q 024322 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R-~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~------~~~~~~~ 182 (269)
++.+.++|++...++++ +-++|.|=+. ...--+.+..-+++.-++++ ++++.+|.|.... ...+.++
T Consensus 83 ~~kL~~~I~~~~~~~~p~~~I~V~tTC~---~~iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~~G~~~a~~a 156 (421)
T cd01976 83 DKKLAKAIDEAYELFPLNKGISVQSECP---VGLIGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQSLGHHIANDA 156 (421)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEECCCh---HHHhccCHHHHHHHHHHhhC---CCEEEEeCCCccCCcccHHHHHHHHH
Confidence 88889999887765534 5577777663 23333445555555555554 6788999887633 2222223
Q ss_pred H-HHHHH--------cCcccEEEecCc--cHHHHHHHHHHHHhcCCCEe
Q 024322 183 L-GDAVE--------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 183 L-~~L~~--------~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~ 220 (269)
+ +.+.. .+.|--||-.++ +.+.++++ .+..|+++.
T Consensus 157 i~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~l---L~~~Gi~v~ 202 (421)
T cd01976 157 IRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRIL---LEEMGLRVV 202 (421)
T ss_pred HHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHH---HHHcCCeEE
Confidence 2 22321 356778885554 33445555 445566554
No 177
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=52.21 E-value=1.4e+02 Score=27.07 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 024322 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (269)
Q Consensus 76 ~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL 155 (269)
+..+.+..+++.|-.+|=.+.++|+ -++.+.++.+.. ..+...-| ..+...+...+.+..
T Consensus 110 ~g~e~l~e~l~~~~gvIl~~~H~gn---------~E~~~~~l~~~~-----~~~~~~yr------p~~np~ld~~i~~~R 169 (308)
T COG1560 110 EGLEHLEEALANGRGVILVTPHFGN---------WELGGRALAQQG-----PKVTAMYR------PPKNPLLDWLITRGR 169 (308)
T ss_pred cCHHHHHHHHHcCCCEEEEecCcch---------HHHHHHHHHHhC-----CCeeEEec------CCCCHHHHHHHHHHH
Confidence 4456789999999999999999998 999999998765 23333322 355667888889999
Q ss_pred HHhCCCccc
Q 024322 156 FRLGLSSVE 164 (269)
Q Consensus 156 ~~L~~d~iD 164 (269)
++.|...++
T Consensus 170 ~r~~~~~~~ 178 (308)
T COG1560 170 ERFGGRLLP 178 (308)
T ss_pred HhcCCcccC
Confidence 999987666
No 178
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=52.16 E-value=76 Score=27.23 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHH
Q 024322 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~ 213 (269)
..++.+.|+.|++.|.--.| +||.+.+.++..++...
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~g 137 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAA 137 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHH
Confidence 46788889999999854445 67777777777766543
No 179
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=51.95 E-value=1.6e+02 Score=25.84 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChhHHHHHHHHHHHcCccc
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~--~~~~~~~~~L~~L~~~G~ir 193 (269)
..++.+.-.+..+-+.+.+++|+|-+=.+-+++. .+..+++++-|.|+++|-+-
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE
Confidence 3567777777777888889999998888877665 45789999999999999654
No 180
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=51.75 E-value=1.1e+02 Score=32.22 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh-CCCccceEEeecCCCCC-----hhHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIWG-----NEGFIDGL 183 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L-~~d~iDll~lH~p~~~~-----~~~~~~~L 183 (269)
++.+-++|++...+++.+-++|.|=+. ...--|.+...+++.-++. ...-+.++.++.|+... .+.++++|
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~---~eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a~~ai 632 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGL---TETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAAVEAI 632 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCch---HhhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHHHHHH
Confidence 888888888765444345677777663 2333344444444433331 11237899999998743 23333333
Q ss_pred -HHHH-----HcCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 184 -GDAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 184 -~~L~-----~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
+.+. ..++|--||-++.++..++++.+..+..|+++.+
T Consensus 633 v~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 633 VATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 2332 2466778876665566667777767777776644
No 181
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=51.13 E-value=1.1e+02 Score=25.49 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCC---CChhHHHHHHHHHHHcCcccEEEecCcc--HHHHHHHHHHHHhcCCC
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~ 218 (269)
.+.+...+...++..+... +.+.+--++. .....+.+.+..|++.|- .+++.+|. ...++.+.. ++
T Consensus 97 ~~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~------~~ 167 (240)
T cd01948 97 DPDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR------LP 167 (240)
T ss_pred CcHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh------CC
Confidence 3445677778888887764 3333333222 334568899999999995 47777663 344444433 46
Q ss_pred EeEEcccCCccCCCcc-------hhhHHHHHHHcCCeEEEccc
Q 024322 219 LASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 219 ~~~~q~~~n~~~~~~~-------~~~l~~~~~~~gi~via~sp 254 (269)
|+++-+..+.+..-.. -..++..|+..|+.+++-+.
T Consensus 168 ~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 168 VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 8887777665543221 12588999999999998653
No 182
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=50.83 E-value=74 Score=26.87 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 178 GFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 178 ~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
+.++.++.++++-.=-.||..+. +.++++.+++. |-.|.+ +| .... +++++|++++|.++.
T Consensus 45 ~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~Fiv-----SP---~~~~-~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 45 NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFIV-----SP---GFDP-EVIEYAREYGIPYIP 106 (196)
T ss_dssp THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEEE-----ES---S--H-HHHHHHHHHTSEEEE
T ss_pred cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEEE-----CC---CCCH-HHHHHHHHcCCcccC
Confidence 45566665655522256898887 88898888775 445554 22 2122 599999999999885
No 183
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=50.51 E-value=2e+02 Score=26.13 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH---
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL--- 148 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~--- 148 (269)
.+.++..+.++.+.+.|++.|-.......... ...+-+.++...... -++ ++ +..++..+.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~~~--~~i----~~----~~~s~~ei~~~~ 135 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKARF--PHI----HI----HSFSPVEIVYIA 135 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHHHC--CCc----CC----CCCCHHHHHHHh
Confidence 56788899999999999987765321111011 233333333322100 011 11 112333221
Q ss_pred -------HHHHHHHHHhCCCccceE--E-e-----e--cCCCCChhHHHHHHHHHHHcCc-ccE---EEecCccHHHHHH
Q 024322 149 -------AALKDSLFRLGLSSVELY--Q-L-----H--WAGIWGNEGFIDGLGDAVEQGL-VKA---VGVSNYSEKRLRN 207 (269)
Q Consensus 149 -------~~v~~sL~~L~~d~iDll--~-l-----H--~p~~~~~~~~~~~L~~L~~~G~-ir~---iGvS~~~~~~i~~ 207 (269)
+..-+.|++.|++.++.. . + + .|...+.++.+++++.+++.|. +.. +|+ +.+.+++.+
T Consensus 136 ~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 136 KKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred ccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 344455677788877631 1 1 1 1222356788999999999985 332 344 456667666
Q ss_pred HHHHHHhcC
Q 024322 208 AYEKLKKRG 216 (269)
Q Consensus 208 ~~~~~~~~~ 216 (269)
.+...++.+
T Consensus 215 ~l~~l~~l~ 223 (340)
T TIGR03699 215 HLERIRELQ 223 (340)
T ss_pred HHHHHHHhc
Confidence 666666554
No 184
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=50.45 E-value=1.7e+02 Score=25.49 Aligned_cols=172 Identities=11% Similarity=0.037 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC--CCCCCCHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA--LPWRLGRQSVLAAL 151 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~--~~~~~~~~~v~~~v 151 (269)
.++..+.+..+.+.|..+++.=-.|-.... ....+...++......+.-.++++-+... -.+..+.+.-.+.+
T Consensus 27 ~~e~~~~~~~~~~~~aD~vElRlD~l~~~~-----~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 101 (253)
T PRK02412 27 LEEVLAEALAISKYDADIIEWRADFLEKIS-----DVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI 101 (253)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEechhhccC-----CHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence 366556666667778887765333332100 12333333332211000236666666532 11233433333334
Q ss_pred HHHHHHhC-CCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCcc------HHHHHHHHHHHHhcCCCEeEEcc
Q 024322 152 KDSLFRLG-LSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 152 ~~sL~~L~-~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~------~~~i~~~~~~~~~~~~~~~~~q~ 224 (269)
+. +-+++ .||||+=+-. ..+.++.+.+..+++.++-|+ |-|+ .+.+.+.++.+...| .+++-+
T Consensus 102 ~~-~~~~~~~d~vDiEl~~------~~~~~~~l~~~~~~~~~kvI~-S~H~f~~tP~~~~l~~~~~~~~~~g--aDivKi 171 (253)
T PRK02412 102 KA-VIKSGLPDYIDVELFS------GKDVVKEMVAFAHEHGVKVVL-SYHDFEKTPPKEEIVERLRKMESLG--ADIVKI 171 (253)
T ss_pred HH-HHhcCCCCEEEEeccC------ChHHHHHHHHHHHHcCCEEEE-eeCCCCCCcCHHHHHHHHHHHHHhC--CCEEEE
Confidence 43 44667 8999973321 234455555555566777776 6552 255555555554433 444444
Q ss_pred cCCccCCCcchhhHHHHHHH-----cCCeEEEcccccCcccc
Q 024322 225 NYSLIYRKPEENGVKAACDE-----LGITLIAYCPIAQGELL 261 (269)
Q Consensus 225 ~~n~~~~~~~~~~l~~~~~~-----~gi~via~spl~~G~L~ 261 (269)
-..+-+..... .++.+.++ .++++++++-=-.|.+|
T Consensus 172 a~~a~~~~D~~-~ll~~~~~~~~~~~~~P~i~~~MG~~G~~S 212 (253)
T PRK02412 172 AVMPQSEQDVL-TLLNATREMKELYADQPLITMSMGKLGRIS 212 (253)
T ss_pred EecCCCHHHHH-HHHHHHHHHHhcCCCCCEEEEeCCCCchHH
Confidence 44443322111 35555533 35677666544445444
No 185
>TIGR00930 2a30 K-Cl cotransporter.
Probab=50.41 E-value=1.1e+02 Score=32.30 Aligned_cols=90 Identities=8% Similarity=0.054 Sum_probs=64.1
Q ss_pred CCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEE
Q 024322 88 GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQ 167 (269)
Q Consensus 88 Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~ 167 (269)
+-.+||.-+.|.+|.- --++..-|+.....+ +.++.|-+... .+.+.+..++.+++.|+++.+|+-|+..
T Consensus 759 ~~~~IDvwW~~~dggL------~lll~~ll~~~~~W~-~~kiRvf~~~~---~~~~~~~~~~~~~~lL~~~RI~a~~~~v 828 (953)
T TIGR00930 759 GKGTIDVWWLVDDGGL------TLLLPYLLTTKKVWK-KCKIRIFVGAQ---KDDRSEQEKKDMATLLYKFRIDAEVIVV 828 (953)
T ss_pred CCceEEEEEecCCCcH------HHHHHHHHhcCcccc-CceEEEEEEec---CCchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4458999999988765 777888887766542 56776666652 3466888999999999999999988877
Q ss_pred eecCCCCChhHHHHHHHHHH
Q 024322 168 LHWAGIWGNEGFIDGLGDAV 187 (269)
Q Consensus 168 lH~p~~~~~~~~~~~L~~L~ 187 (269)
.-.....+..+.++..+++.
T Consensus 829 ~~di~~~p~~~~~~~~~~~~ 848 (953)
T TIGR00930 829 LMDINAKPQTESMEAFEEMI 848 (953)
T ss_pred eccCCCCcchhHHHHHHHHH
Confidence 75443344455555554443
No 186
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=50.32 E-value=43 Score=31.45 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCc--cc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024322 179 FIDGLGDAVEQGL--VK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 179 ~~~~L~~L~~~G~--ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
-++.+.+|++.-. |. .-|-+.++...++.+++. --.+++|....-+-.-.+-..+.+.|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~-----~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM-----GCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc-----CCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 4667777777644 22 336677788888888764 348888888766543222235899999999998876
No 187
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=50.21 E-value=1.9e+02 Score=25.79 Aligned_cols=134 Identities=9% Similarity=0.053 Sum_probs=71.9
Q ss_pred chhhHHHHHHHHHHHHHCC-CCEEEcccccCCCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEecCCC---------
Q 024322 70 DDRKMKAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINS--ETLLGRFIKERKQRDPEVEVTVATKFAA--------- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~G-vn~~DtA~~Yg~g~~~~~~~s--e~~lG~al~~~~~~~~R~~l~I~tK~~~--------- 137 (269)
+.++.+...+.++..++.| +.-+=..-..|.+.+ +... ++++-.+.+.... |-.|++.+-...
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~--Lt~eEr~~~~~~~~~~~~~---~~pvi~gv~~~~t~~~i~la~ 90 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFM--LSTEEKKEIFRIAKDEAKD---QIALIAQVGSVNLKEAVELGK 90 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEECCccccccc--CCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHH
Confidence 4577888999999999999 886654433332111 1111 2333334443321 334454443211
Q ss_pred -------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccH
Q 024322 138 -------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 138 -------------~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~ 202 (269)
.| ...+.+.+.+-+++..+. ++.+.+++.|.|......=..+.+.+|.+...|..|=-|+.+.
T Consensus 91 ~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~--~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~d~ 168 (290)
T TIGR00683 91 YATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAE--TGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDF 168 (290)
T ss_pred HHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhh--CCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCCCH
Confidence 11 223456666666666554 3357888888886544333345555666556555554555566
Q ss_pred HHHHHHHH
Q 024322 203 KRLRNAYE 210 (269)
Q Consensus 203 ~~i~~~~~ 210 (269)
.++.++..
T Consensus 169 ~~~~~~~~ 176 (290)
T TIGR00683 169 YLLERLKK 176 (290)
T ss_pred HHHHHHHH
Confidence 66666543
No 188
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=49.96 E-value=2e+02 Score=26.05 Aligned_cols=130 Identities=10% Similarity=0.068 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHCCCCEEEc---cc-----ccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDT---AE-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGR 144 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~Dt---A~-----~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~ 144 (269)
++++..+....+.+.|+..+|- ++ .||.|.+ ...--+.+.+.++...... ..++-|+-|+... ++ +.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~--Ll~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g-~~-~~ 147 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGAT--LLKDPELIYQGAKAMREAV-PAHLPVTVKVRLG-WD-SG 147 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchH--hhcCHHHHHHHHHHHHHhc-CCCcceEEEEECC-CC-Cc
Confidence 3467777777888899999992 22 2444311 0011344555554433211 1246788886431 22 11
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC---CCh-hHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHH
Q 024322 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---WGN-EGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (269)
Q Consensus 145 ~~v~~~v~~sL~~L~~d~iDll~lH~p~~---~~~-~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~ 211 (269)
+.. ..+-+.++..| +|.+.+|.-.. +.. .--|+...++++.=.|.-||..+. +++.++++++.
T Consensus 148 ~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 148 ERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred hHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 222 34455566666 56777885322 111 113788888888877888998876 78888888753
No 189
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=49.91 E-value=2.2e+02 Score=26.65 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~-~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
....+.|+.+++.|+ ....|++..- .+.+-.|.++..... +.+.++++.- |...+..
T Consensus 41 p~i~~Al~~rvdhGv----fGY~~~~~~~------~~ai~~w~~~r~~~~i~~e~i~~~p~------------VVpgi~~ 98 (388)
T COG1168 41 PEIIEALRERVDHGV----FGYPYGSDEL------YAAIAHWFKQRHQWEIKPEWIVFVPG------------VVPGISL 98 (388)
T ss_pred HHHHHHHHHHHhcCC----CCCCCCCHHH------HHHHHHHHHHhcCCCCCcceEEEcCc------------chHhHHH
Confidence 566778999999987 2333444111 234445555433221 2233333332 3555555
Q ss_pred HHHHhCCCccceEEeecCCCCC--------------------hhH---HHHHHHHHHHcCcccEEEecC--------ccH
Q 024322 154 SLFRLGLSSVELYQLHWAGIWG--------------------NEG---FIDGLGDAVEQGLVKAVGVSN--------YSE 202 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~~~--------------------~~~---~~~~L~~L~~~G~ir~iGvS~--------~~~ 202 (269)
.++.|- +-=|-+.++.|-..+ +.. =++.||+...++.++.+=+|| |+.
T Consensus 99 ~I~~~T-~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~ 177 (388)
T COG1168 99 AIRALT-KPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTK 177 (388)
T ss_pred HHHHhC-cCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccH
Confidence 555553 345666666664422 111 277888888888888887876 566
Q ss_pred HHHHHHHHHHHhcCCCEeEEcccCCccCC
Q 024322 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (269)
+.++++.+.|.++++.+.+-.+.--+...
T Consensus 178 eeL~~i~elc~kh~v~VISDEIHaDlv~~ 206 (388)
T COG1168 178 EELRKIAELCLRHGVRVISDEIHADLVLG 206 (388)
T ss_pred HHHHHHHHHHHHcCCEEEeeccccccccc
Confidence 88888888888888877777666555443
No 190
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=49.47 E-value=2.4e+02 Score=26.89 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHHHcCcccE----EEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024322 175 GNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 175 ~~~~~~~~L~~L~~~G~ir~----iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (269)
..+++.++++.+++.|.--. +|+-+.+.+.+++.++.+.+.+ ++.+ .++++.+-+.. .+.+.++++|.-
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~--~~~~--~~~~l~P~PGT-~l~~~~~~~g~~ 393 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELN--PHTI--QVSLAAPYPGT-ELYDQAKQNGWI 393 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCce--eeeecccCCCc-HHHHHHHHCCCc
Confidence 35678889999999986433 3666778888888888776544 3333 34445544444 488888888753
No 191
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=49.31 E-value=7.3 Score=36.12 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.++..+.|+.|.+.|++.+-|+=+....... .--..+.+.++... ...+.|..=+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~---~~~~~~~~l~~~a~----~~~~~v~~Disp--------------- 69 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPE---DYLERLKELLKLAK----ELGMEVIADISP--------------- 69 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------HHHHHHHHHHHHH----HCT-EEEEEE-C---------------
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHH---HHHHHHHHHHHHHH----HCCCEEEEECCH---------------
Confidence 56888999999999999999998776542210 00122222222222 234555544432
Q ss_pred HHHHHhCCCccceEEeecCCC----CChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCc
Q 024322 153 DSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~----~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~ 228 (269)
++|+.||.++-|+-.++.... .+..=..+.+.+|-+.|.--.+=.|+.+.+.++++++.-... -.+.. +|-
T Consensus 70 ~~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~-~~i~a----~HN 144 (357)
T PF05913_consen 70 KVLKKLGISYDDLSFFKELGIDGLRLDYGFSGEEIAKLSKNGIKIELNASTITEEELDELIKYGANF-SNIIA----CHN 144 (357)
T ss_dssp CHHHTTT-BTTBTHHHHHHT-SEEEESSS-SCHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--G-GGEEE----E--
T ss_pred HHHHHcCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCH-HHeEE----Eec
Confidence 123333333333222222110 011111234444544466666677787777888775531000 01233 344
Q ss_pred cCCCcchh-------hHHHHHHHcCCeEEEcccccC
Q 024322 229 IYRKPEEN-------GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 229 ~~~~~~~~-------~l~~~~~~~gi~via~spl~~ 257 (269)
+.+.++.. +.=.+.+++|+.+.|+-|-..
T Consensus 145 fYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~ 180 (357)
T PF05913_consen 145 FYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDE 180 (357)
T ss_dssp -B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SS
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 44544431 245667888999999988763
No 192
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.31 E-value=1.4e+02 Score=27.55 Aligned_cols=90 Identities=10% Similarity=0.073 Sum_probs=60.7
Q ss_pred EEeecCCC------------CChhHHHHHHHHHHHcCc----ccEEEec--CccHHHHHHHHHHHHhcCCCEeEEcccCC
Q 024322 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 166 l~lH~p~~------------~~~~~~~~~L~~L~~~G~----ir~iGvS--~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (269)
+-||.++. .+.++++++++++.+++. |+++=+. |-+.+.++++.+.++.. +..++-++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l--~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGI--KCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC--CCcEEEEecC
Confidence 56777654 235889999998877532 3344444 34668888888876543 4677888999
Q ss_pred ccCCCc----chh---hHHHHHHHcCCeEEEcccccC
Q 024322 228 LIYRKP----EEN---GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 228 ~~~~~~----~~~---~l~~~~~~~gi~via~spl~~ 257 (269)
++...+ ... .+.+.++++|+.+......+.
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 876421 111 466778999999998887654
No 193
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=48.89 E-value=1.6e+02 Score=24.63 Aligned_cols=159 Identities=12% Similarity=0.039 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.++..++++.+.+.|+.-+-..+.+- +...+.+++ ..+.+.+=++.+......+.....++
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p~~v-----------~~~~~~l~~-------~~~~v~~~~~fp~g~~~~~~k~~eve 76 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNPCFV-----------PLAREALKG-------SGVKVCTVIGFPLGATTTEVKVAEAR 76 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcHHHH-----------HHHHHHcCC-------CCcEEEEEEecCCCCCcHHHHHHHHH
Confidence 568999999999998887776543322 223333332 24555555543334455666777788
Q ss_pred HHHHHhCCCccceEEeecCC-CCChhHHHHHHHHHHHc--Cccc--EEEecCccHHHHHHHHHHHHhcCCCEeEEccc--
Q 024322 153 DSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQ--GLVK--AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN-- 225 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~-~~~~~~~~~~L~~L~~~--G~ir--~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~-- 225 (269)
++++ +|.|-+|+++-=..- ....+++++.|.++++. |+.- -+...-.+.+++..+.+.+.+.| .+++.+.
T Consensus 77 ~A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~G--aD~IKTsTG 153 (203)
T cd00959 77 EAIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAG--ADFIKTSTG 153 (203)
T ss_pred HHHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEcCCC
Confidence 8887 599999987654321 12346677778777776 4422 23444456788888888887766 4555555
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEEc
Q 024322 226 YSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
|..-.-..+.-.++...-+..++|.+.
T Consensus 154 ~~~~~at~~~v~~~~~~~~~~v~ik~a 180 (203)
T cd00959 154 FGPGGATVEDVKLMKEAVGGRVGVKAA 180 (203)
T ss_pred CCCCCCCHHHHHHHHHHhCCCceEEEe
Confidence 754333333212332222245666554
No 194
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.32 E-value=1.1e+02 Score=28.15 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=54.9
Q ss_pred CChhHHHHHHHHHHHc-Cc---ccEEEec--CccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcc----hh---hHHH
Q 024322 174 WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE----EN---GVKA 240 (269)
Q Consensus 174 ~~~~~~~~~L~~L~~~-G~---ir~iGvS--~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~~---~l~~ 240 (269)
++.+++.+++.+..+. |+ +.++=+. |-+.+.++++.+..+ +.+..++-++||+...... .+ .+.+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 4578888888777554 42 1233233 447888888877654 3567888999998654221 11 4677
Q ss_pred HHHHcCCeEEEcccccC
Q 024322 241 ACDELGITLIAYCPIAQ 257 (269)
Q Consensus 241 ~~~~~gi~via~spl~~ 257 (269)
..+++||.+......+.
T Consensus 301 ~L~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHHHCCceEEEECCCCC
Confidence 77889999999888754
No 195
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.25 E-value=1.4e+02 Score=23.90 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=70.0
Q ss_pred HHHHHHHHHHH-HCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 75 e~~~~~l~~Al-~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
+...+++.+++ +.|+..+.+.-.=-. |+.+-.|+.+-. +++..+-. +.....+-..+-+
T Consensus 26 d~gakvia~~l~d~GfeVi~~g~~~tp---------~e~v~aA~~~dv------~vIgvSsl-----~g~h~~l~~~lve 85 (143)
T COG2185 26 DRGAKVIARALADAGFEVINLGLFQTP---------EEAVRAAVEEDV------DVIGVSSL-----DGGHLTLVPGLVE 85 (143)
T ss_pred ccchHHHHHHHHhCCceEEecCCcCCH---------HHHHHHHHhcCC------CEEEEEec-----cchHHHHHHHHHH
Confidence 44556788888 678888877554444 899999987643 55554444 2345567788888
Q ss_pred HHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHH
Q 024322 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~ 210 (269)
.|+..|.+.|= .+-... .+.++ +.+|++.|.-+.++-.+--.+.+..++.
T Consensus 86 ~lre~G~~~i~--v~~GGv-ip~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 86 ALREAGVEDIL--VVVGGV-IPPGD----YQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred HHHHhCCcceE--EeecCc-cCchh----HHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 89999987544 333221 12222 7788889988888886643344444443
No 196
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=48.22 E-value=97 Score=24.28 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=44.9
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC----CccceEEeecCCC--CChhHHHHHHHHHHH
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~----d~iDll~lH~p~~--~~~~~~~~~L~~L~~ 188 (269)
|=-+.|+-|++ ....+..+++.+.++++.+.. ...|++++..+.. .+..++.+.|+.+.+
T Consensus 48 RvG~~VSKKvG---~AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNG---NAVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccC---cchHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 56778888886 467888999999999987743 5589999998865 445666666665554
No 197
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=48.07 E-value=2.5e+02 Score=26.58 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHcCcc-----cEEEecCccHHHHHHHHHHHHhcC
Q 024322 176 NEGFIDGLGDAVEQGLV-----KAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~i-----r~iGvS~~~~~~i~~~~~~~~~~~ 216 (269)
.+++.++++.+++.|.- --+|+-+.+.+.+++.++.+.+.+
T Consensus 176 ~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~ 221 (430)
T PRK08208 176 RADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYR 221 (430)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCC
Confidence 45666666666666631 124555666666666666555444
No 198
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=47.98 E-value=1.2e+02 Score=23.11 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccccccccC
Q 024322 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLFFLT 266 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~~~ 266 (269)
+.++++.+.+...++.+...-+.- .++.+ .+++++++.++.+|.++.-+.+.|...+..
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~g----~~~~~-~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~g 123 (146)
T cd01989 65 ELLLPYRCFCSRKGVQCEDVVLED----DDVAK-AIVEYVADHGITKLVMGASSDNHFSMKFKK 123 (146)
T ss_pred HHHHHHHHHHhhcCCeEEEEEEeC----CcHHH-HHHHHHHHcCCCEEEEeccCCCceeecccC
Confidence 455555555444444443322211 12233 599999999999999999999888766553
No 199
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=47.69 E-value=2e+02 Score=26.60 Aligned_cols=26 Identities=4% Similarity=-0.028 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEV 97 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~ 97 (269)
.+.++..++++.--+.||..++....
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p 44 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFP 44 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45588888899888999999997543
No 200
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=47.66 E-value=88 Score=28.03 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=59.5
Q ss_pred HHHhCCCccceEEeec-CCCCChhHH-----HHHHHHHHHcCcccEEEecCccHHH----HHHHHHHHHhcCCCEeEEcc
Q 024322 155 LFRLGLSSVELYQLHW-AGIWGNEGF-----IDGLGDAVEQGLVKAVGVSNYSEKR----LRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 155 L~~L~~d~iDll~lH~-p~~~~~~~~-----~~~L~~L~~~G~ir~iGvS~~~~~~----i~~~~~~~~~~~~~~~~~q~ 224 (269)
++-++-.++|++.+.. .......+. -+.+.+...+--=|++|+.+.++.. .+++-+..++. .|.-+|+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~--gf~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVREL--GFVGVKL 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhc--CceEEEe
Confidence 7778888999999884 221112222 2567777777777899999886542 22333322222 2444443
Q ss_pred cCCccC--CCcch-hhHHHHHHHcCCeEEEcccccCc
Q 024322 225 NYSLIY--RKPEE-NGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 225 ~~n~~~--~~~~~-~~l~~~~~~~gi~via~spl~~G 258 (269)
.-.... .+..+ ..++++|+++|+.|+-+.....+
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 221111 11111 25999999999999987666444
No 201
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=47.62 E-value=1.7e+02 Score=24.69 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.+.+++.++++.+++.|++.|.-...-.+ +++.+...-++++ .++.|..=. -.+.+.++.++
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~--------~~~~i~~l~~~~~-----~~~~iGaGT-----V~~~~~~~~a~ 80 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPD--------PFDSIAALVKALG-----DRALIGAGT-----VLSPEQVDRLA 80 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc--------HHHHHHHHHHHcC-----CCcEEeEEe-----cCCHHHHHHHH
Confidence 35699999999999999999997532222 3666655555543 344443322 34555554444
Q ss_pred HHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHH
Q 024322 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~ 210 (269)
..|.| ++|.|.. .. +.++..+..|..-..| .++++++.++.+
T Consensus 81 -----~aGA~-----fivsp~~--~~---~v~~~~~~~~~~~~~G--~~t~~E~~~A~~ 122 (206)
T PRK09140 81 -----DAGGR-----LIVTPNT--DP---EVIRRAVALGMVVMPG--VATPTEAFAALR 122 (206)
T ss_pred -----HcCCC-----EEECCCC--CH---HHHHHHHHCCCcEEcc--cCCHHHHHHHHH
Confidence 34443 4455532 22 2334445666655555 556677777654
No 202
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=47.30 E-value=1.9e+02 Score=26.46 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=51.8
Q ss_pred HHHHHhCCCccceEEee-cCCC--CChhHHHHHHHHHHHcCccc-EEEecCc---cHHHHHHHHHHHHhcCCCEeEEccc
Q 024322 153 DSLFRLGLSSVELYQLH-WAGI--WGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH-~p~~--~~~~~~~~~L~~L~~~G~ir-~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (269)
+.-+.+|.|+||+=+.- .|+. ...++....++...+.=.+- .|..|.. +++.++.+++.++. -++-++-+.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g--~~pLInSat 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEG--ERCLLGSAE 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCC--CCCEEEECC
Confidence 34457787777765432 2322 12334444444444432222 2655533 77888888776542 234443333
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEEcccc
Q 024322 226 YSLIYRKPEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi~via~spl 255 (269)
.. ..+ .+.+.|+++|..+++.+|.
T Consensus 161 ~e-----n~~-~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 ED-----NYK-KIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HH-----HHH-HHHHHHHHhCCeEEEEcHH
Confidence 21 112 4888888888888888764
No 203
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=47.22 E-value=2e+02 Score=25.38 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEc---ccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDT---AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~Dt---A~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
.++..+..+.+.+.|+..||. ++.+..+ .+....+.+.+-+.++.... .-++-|..|+.+ +. +.+. .
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~---~~~~Pv~vKl~~---~~--~~~~-~ 170 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKK---ATDVPVIVKLTP---NV--TDIV-E 170 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHh---ccCCCEEEEeCC---Cc--hhHH-H
Confidence 478888888888999998885 2222110 00111235666677766542 126778888853 11 1222 2
Q ss_pred HHHHHHHhCCCccceEE------eecCCC----------C-C---hhHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHH
Q 024322 151 LKDSLFRLGLSSVELYQ------LHWAGI----------W-G---NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAY 209 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~------lH~p~~----------~-~---~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~ 209 (269)
+-+.+...|.|.|+++- +|.... . + ..-.++.+.++++.=.+.-||..+. +.+.+.+++
T Consensus 171 ~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l 250 (296)
T cd04740 171 IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFL 250 (296)
T ss_pred HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH
Confidence 33456778888776641 121000 0 0 1235677788877656889999987 788888887
Q ss_pred HHHHhcCCCEeEEcccCCccC----CCcchhhHHHHHHHcCC
Q 024322 210 EKLKKRGIPLASNQVNYSLIY----RKPEENGVKAACDELGI 247 (269)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~----~~~~~~~l~~~~~~~gi 247 (269)
.. | -+.+|+-=.++. ......++-++.+++|.
T Consensus 251 ~~----G--Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 251 MA----G--ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred Hc----C--CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 53 2 466665333222 11112356677777764
No 204
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=47.12 E-value=55 Score=28.57 Aligned_cols=87 Identities=9% Similarity=-0.052 Sum_probs=54.0
Q ss_pred cceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHH
Q 024322 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (269)
Q Consensus 163 iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~ 242 (269)
.++.++..|-. .+-++.+.+|. .+.--..|=|-++...+.++++. ...+++|+.....-.-.+-..+.+.|
T Consensus 153 ~~i~~iEqP~~---~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a 223 (263)
T cd03320 153 GRIEYIEQPLP---PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEA 223 (263)
T ss_pred cCCceEECCCC---hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHH
Confidence 45666666643 33466666666 44444666666666677776553 34777777766543222222589999
Q ss_pred HHcCCeEEEcccccCc
Q 024322 243 DELGITLIAYCPIAQG 258 (269)
Q Consensus 243 ~~~gi~via~spl~~G 258 (269)
+++|+.++..+-+..+
T Consensus 224 ~~~gi~~~~~~~~es~ 239 (263)
T cd03320 224 RARGIPAVVSSALESS 239 (263)
T ss_pred HHcCCCEEEEcchhhH
Confidence 9999999887555444
No 205
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=46.85 E-value=2e+02 Score=27.27 Aligned_cols=61 Identities=7% Similarity=0.061 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccccc
Q 024322 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLL 262 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~ 262 (269)
+.+.++.+.+..++ +.+..+...+-||+..-++-..+.+.|+++|+-++.=..++++.+..
T Consensus 148 d~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~ 208 (409)
T KOG0053|consen 148 DVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQD 208 (409)
T ss_pred chhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccC
Confidence 44555555554433 35677888888888776666578999999999999988888875543
No 206
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=46.81 E-value=2.3e+02 Score=25.92 Aligned_cols=153 Identities=12% Similarity=0.014 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
++++..+....+.+.|++.|=.-- |.. . ....-.=+++++.-. +++-|.-=.. ..++.+.-.+-+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~-~----~~d~~~v~~vRe~~G----~~~~l~vDaN---~~~~~~~A~~~~- 202 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRD-P----RRDPDRVAAARRAIG----PDAELFVDAN---GAYSRKQALALA- 202 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCC-H----HHHHHHHHHHHHHcC----CCCeEEEECC---CCCCHHHHHHHH-
Confidence 346666667777889999764311 210 0 001222233433221 2332222111 234544333222
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc--Cc-ccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCcc
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~-ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (269)
+.|+. +++.++..|-. .+-++.+.+|+++ -. --+.|=+-++...+.++++. --.+++|....-+
T Consensus 203 ~~l~~-----~~~~~~EeP~~---~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~ 269 (352)
T cd03328 203 RAFAD-----EGVTWFEEPVS---SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRC 269 (352)
T ss_pred HHHHH-----hCcchhhCCCC---hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCcccc
Confidence 22333 45555555532 3347778888877 32 23567777788888888764 3488888887765
Q ss_pred CCCcchhhHHHHHHHcCCeEEEcc
Q 024322 230 YRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~via~s 253 (269)
-.-.+-..+.++|+.+|+.++.+.
T Consensus 270 GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 270 GGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CCHHHHHHHHHHHHHcCCeeccCc
Confidence 322222258999999999999874
No 207
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=46.74 E-value=2e+02 Score=27.24 Aligned_cols=114 Identities=8% Similarity=0.043 Sum_probs=64.7
Q ss_pred cccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh-CCCccceEEeecCCCC
Q 024322 96 EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIW 174 (269)
Q Consensus 96 ~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L-~~d~iDll~lH~p~~~ 174 (269)
-.||. ++.+-++|++..++++.+=++|.|=+-. ..--+.+..-+++.-++. ...-+.++.++.|+..
T Consensus 71 ~VfGg---------~~~L~~~I~~~~~~~~P~~I~V~ttC~~---eiIGDDi~~v~~~~~~e~p~~~~~pvi~v~tpgf~ 138 (432)
T TIGR01285 71 TILGG---------DEHIEEAIDTLCQRNKPKAIGLLSTGLT---ETRGEDIARVVRQFREKHPQHKGTAVVTVNTPDFK 138 (432)
T ss_pred eEECc---------HHHHHHHHHHHHHhcCCCEEEEeCCCcc---cccccCHHHHHHHHHhhcccccCCeEEEecCCCcC
Confidence 46786 8888888887765543556777766642 333334444444433331 1113678889988873
Q ss_pred C-----hhHHHHHHH-HHHH--------cCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 175 G-----NEGFIDGLG-DAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 175 ~-----~~~~~~~L~-~L~~--------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
. .+.++++|. .+.. .++|--||-++.+...++++.+..+..|+++.+
T Consensus 139 g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~~ 199 (432)
T TIGR01285 139 GSLEDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPII 199 (432)
T ss_pred CchHHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceEE
Confidence 2 334444442 2321 345777777666555556665556666776643
No 208
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=46.64 E-value=1.9e+02 Score=24.81 Aligned_cols=24 Identities=4% Similarity=0.034 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA 95 (269)
.+.++..++++...+.|+..++..
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg 39 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVG 39 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec
Confidence 466999999999999999999975
No 209
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=46.16 E-value=83 Score=28.05 Aligned_cols=57 Identities=7% Similarity=0.014 Sum_probs=37.2
Q ss_pred CccHHHHHHHHHHHHhcCCCEeEEcccCCc---------cC--CCcchhhHHHHHHHcCCeEEEcccc
Q 024322 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSL---------IY--RKPEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~---------~~--~~~~~~~l~~~~~~~gi~via~spl 255 (269)
+.+.+..++.++.|.+.|+.-..+--.+.- .. .+..-.+|+++++++||+|+.|.--
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 347788999999999999876665444431 01 1112237999999999999988654
No 210
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.91 E-value=2e+02 Score=26.61 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=60.7
Q ss_pred ccceE-EeecCCC------------CChhHHHHHHHHHH-HcCc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEeEE
Q 024322 162 SVELY-QLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 162 ~iDll-~lH~p~~------------~~~~~~~~~L~~L~-~~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~ 222 (269)
++||. -||.++. .+.+++.+++.+.. +.|+ |+++=+.++ +.+.++++.+.++.......++
T Consensus 208 ~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~Vn 287 (348)
T PRK14467 208 EVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVN 287 (348)
T ss_pred CeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEE
Confidence 44554 5687765 12455666666554 3343 455555554 5788888888765432235677
Q ss_pred cccCCccCCC----cchh---hHHHHHHHcCCeEEEcccccCccc
Q 024322 223 QVNYSLIYRK----PEEN---GVKAACDELGITLIAYCPIAQGEL 260 (269)
Q Consensus 223 q~~~n~~~~~----~~~~---~l~~~~~~~gi~via~spl~~G~L 260 (269)
-++||++... +..+ .+.+..+++|+.+....+.+.-+.
T Consensus 288 LIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~ 332 (348)
T PRK14467 288 LIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDIF 332 (348)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchh
Confidence 7899986532 1211 356677788999999988765443
No 211
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=45.43 E-value=93 Score=29.89 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHhCCCccceEEe-ecCCCCChhHHHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEeEEcccCC
Q 024322 156 FRLGLSSVELYQL-HWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 156 ~~L~~d~iDll~l-H~p~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (269)
..+|.|++=+.+. ..|...+.+.+-+....+. ++.+||- |-+++.+.++++. ..++++|++-+
T Consensus 274 ~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~ 338 (454)
T PRK09427 274 YDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGD 338 (454)
T ss_pred HhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCC
Confidence 4578888888643 3454455554444444333 8899987 6688888888765 57999999764
No 212
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=45.10 E-value=1.2e+02 Score=23.27 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=43.5
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChhHHHHHHHHHHHc
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~--~d~iDll~lH~p~~--~~~~~~~~~L~~L~~~ 189 (269)
|--+.|+-|++. ....+..+++.+.++++... +.-.|++++..+.. .+..++.+.|..|.+.
T Consensus 45 R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 566777777543 35778889999999987654 33579999998865 4456666666665443
No 213
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=44.78 E-value=2.3e+02 Score=25.35 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCc-c-cEEEecCccH------------HH
Q 024322 139 PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-V-KAVGVSNYSE------------KR 204 (269)
Q Consensus 139 ~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~-i-r~iGvS~~~~------------~~ 204 (269)
+...+.+.+++-++...+ +. +-+.+-.--+|+.. .++.++.|.+|++.|. + -++|+=+++. +.
T Consensus 88 ~t~l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~ 164 (302)
T TIGR01212 88 NTYAPVEVLKEMYEQALS-YD-DVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFAC 164 (302)
T ss_pred cCCCCHHHHHHHHHHHhC-CC-CEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHH
Confidence 345667777776666665 21 11222111234432 4556777777777776 4 4677665543 44
Q ss_pred HHHHHHHHHhcCCCEeEEcccCCccCCCcch-hhHHHHHHHcCCe---EEEcccccC
Q 024322 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGIT---LIAYCPIAQ 257 (269)
Q Consensus 205 i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~l~~~~~~~gi~---via~spl~~ 257 (269)
+.++++.+++.|+++ ...+.+.+-....+. .+.++++.+.++. +....|+-+
T Consensus 165 ~~~ai~~l~~~gi~v-~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pg 220 (302)
T TIGR01212 165 YVDAVKRARKRGIKV-CSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKG 220 (302)
T ss_pred HHHHHHHHHHcCCEE-EEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCC
Confidence 445555555556542 223334332222211 1345566655543 444444443
No 214
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=44.57 E-value=1.3e+02 Score=26.19 Aligned_cols=109 Identities=10% Similarity=0.120 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCC----CChhHHHHHHHHHHHcCc-ccEEEecCc------cHHHHHHHHHHH
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKL 212 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~~----~~~~~~~~~L~~L~~~G~-ir~iGvS~~------~~~~i~~~~~~~ 212 (269)
++.+..+++.+.+. .- ..-| +++.-.. ......++.+++|++.|. |..||+=.| +.+.+...++..
T Consensus 102 ~~~i~~af~~ar~~-~P-~a~l-~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~ 178 (254)
T smart00633 102 EDYIEKAFRYAREA-DP-DAKL-FYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRF 178 (254)
T ss_pred hHHHHHHHHHHHHh-CC-CCEE-EEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHH
Confidence 46677777666443 22 1222 3342111 123467888999999998 999998654 467788888877
Q ss_pred HhcCCCEeEEcccCCccCCCc----chhhHHHHHHHcC--CeEEEcccc
Q 024322 213 KKRGIPLASNQVNYSLIYRKP----EENGVKAACDELG--ITLIAYCPI 255 (269)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~----~~~~l~~~~~~~g--i~via~spl 255 (269)
...|.++.+-.+.+....... .-..+++.|.++. .+|+-|+-.
T Consensus 179 ~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~ 227 (254)
T smart00633 179 ASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVT 227 (254)
T ss_pred HHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCc
Confidence 777777777666655432100 0125888888875 777777644
No 215
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=44.56 E-value=1.3e+02 Score=28.45 Aligned_cols=106 Identities=21% Similarity=0.126 Sum_probs=59.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hhHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-----~~~~~~~L~ 184 (269)
|+.+-++|++..++++.+-++|.|=+. ...--+.++..+++. ++++ ++++.++.|+... .+.++++|-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~---~~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCI---AEIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCc---HHHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccccHHHHHHHHHH
Confidence 888888888765544345667766663 233334455555554 4443 6899999987732 333444443
Q ss_pred H-HHH------cCcccEEEecC-cc---HHHHHHHHHHHHhcCCCEeEE
Q 024322 185 D-AVE------QGLVKAVGVSN-YS---EKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 185 ~-L~~------~G~ir~iGvS~-~~---~~~i~~~~~~~~~~~~~~~~~ 222 (269)
+ +.+ .+.|--||..+ .+ ...++++.+..+..|+++.++
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 2 322 24577888643 12 233444444455667666554
No 216
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.39 E-value=2.2e+02 Score=25.04 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC--------c-ccEEE
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--------L-VKAVG 196 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G--------~-ir~iG 196 (269)
|+.-.=.++....+.....+.+.+-++.+++.|.-+ +-...+|++|+..- | |+.+|
T Consensus 25 rG~~~k~~dt~iD~~~v~~~~fq~klensr~kle~S---------------~Fl~~~lEqLq~~l~~~~~piek~~vclg 89 (281)
T KOG3131|consen 25 RGRHKKESDTLIDCPDVNVEKFQPKLENSRTKLEQS---------------DFLLVALEQLQQQLEGIRKPIEKIIVCLG 89 (281)
T ss_pred cCCCccccccccCcccccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhHHHhhhccchhheEEEEe
Confidence 444444666655456677888999999999998532 22344555555443 4 48899
Q ss_pred ecCccH-----HHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024322 197 VSNYSE-----KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 197 vS~~~~-----~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~ 257 (269)
+.+|.. -|+.-++++-+...+.. .+.+++++--. ..=.++.+..|-.++.--+.+.
T Consensus 90 lG~f~~~~~a~~Qlal~iei~r~fk~~~----~~~s~fDPvf~-k~E~eyLeslG~cvLs~~e~~~ 150 (281)
T KOG3131|consen 90 LGPFSRTYHALHQLALVIEIHRHFKIRD----VEASYFDPVFR-KSEKEYLESLGGCVLSKDEAGK 150 (281)
T ss_pred eccccccccHHHHHHHHHHHHHHhcccc----ceeeeeCcchh-hhHHHHHHhcCCeEeccCcccc
Confidence 988743 34444444433333322 33444443211 1246788888888776665543
No 217
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=44.36 E-value=1e+02 Score=25.14 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+++..+-.+++|-+.|+.+|=.|+.||. +-..+-+.+... =++++.|.-..+ ..-+-..+.+.++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--------tA~k~lemveg~------lkvVvVthh~Gf-~e~g~~e~~~E~~ 76 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--------TALKALEMVEGD------LKVVVVTHHAGF-EEKGTQEMDEEVR 76 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--------HHHHHHHhcccC------ceEEEEEeeccc-ccCCceecCHHHH
Confidence 4567777888999999999999999995 122222222211 235555544221 2233445777788
Q ss_pred HHHHHhCCC
Q 024322 153 DSLFRLGLS 161 (269)
Q Consensus 153 ~sL~~L~~d 161 (269)
+-|+..|.+
T Consensus 77 ~~L~erGa~ 85 (186)
T COG1751 77 KELKERGAK 85 (186)
T ss_pred HHHHHcCce
Confidence 899998864
No 218
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.99 E-value=2.6e+02 Score=25.89 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=61.0
Q ss_pred eEEeecCCC------------CChhHHHHHHHHHHHc--Ccc--cEEEec--CccHHHHHHHHHHHHhcCCCEeEEcccC
Q 024322 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLV--KAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 165 ll~lH~p~~------------~~~~~~~~~L~~L~~~--G~i--r~iGvS--~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (269)
.+-||.|+. ++.+++++++.+..+. ++| -++=+. |-+.+++.++.+.++ +.+..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 477897764 3467888888886544 222 233343 457788888888765 35678888999
Q ss_pred CccCCC----cch---hhHHHHHHHcCCeEEEcccccC
Q 024322 227 SLIYRK----PEE---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 227 n~~~~~----~~~---~~l~~~~~~~gi~via~spl~~ 257 (269)
|+.... +.. ....+..+++||.+......+.
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 975432 111 1456777889999999887754
No 219
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=43.90 E-value=1.1e+02 Score=27.81 Aligned_cols=64 Identities=23% Similarity=0.204 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCC--CCChhHHHHHHHHHHHcCcccEEEec--CccHHHHHHH
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVS--NYSEKRLRNA 208 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~--~~~~~~~~~~L~~L~~~G~ir~iGvS--~~~~~~i~~~ 208 (269)
.+.+++.++..-++|+.....+-+--..+ .+--..+-+.|++|.++| ++.|=|. +|-.+.++.+
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl 273 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETL 273 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHH
Confidence 45688888888899987764444442222 233456788999999999 5555443 3444455544
No 220
>PTZ00081 enolase; Provisional
Probab=43.89 E-value=1.7e+02 Score=28.00 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC--cccEEEe--cCccHHHHHHHHHHHHhcCC
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGV--SNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G--~ir~iGv--S~~~~~~i~~~~~~~~~~~~ 217 (269)
.+++.+.+-+.+.++.++ +++|-.|-. ++-|+.+.+|.++= .+.-+|= +..+++.++++++. -
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~---~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-----~ 347 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFD---QDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-----K 347 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCC---cccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh-----C
Confidence 567777766666666654 566776654 33355666665552 5555553 23468888888765 2
Q ss_pred CEeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
-.+++|+..|-+-.-.+..++++.|+++|+.++.
T Consensus 348 aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 348 ACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 4666666666544322223588899999988776
No 221
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=43.79 E-value=1.3e+02 Score=27.00 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=53.7
Q ss_pred cceEEeecCCCCChhHHHHHHHHHHHcC-cccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHH
Q 024322 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDll~lH~p~~~~~~~~~~~L~~L~~~G-~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (269)
+++.++..|-. .. +.+..|.++- .--+.|=|-++.+.+.++++. .-.+++|+.....-.-..-..+.+.
T Consensus 183 ~~i~~iEqP~~--~~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~ 252 (307)
T TIGR01927 183 GRIAFLEEPLP--DA---DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQK 252 (307)
T ss_pred CCceEEeCCCC--CH---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHH
Confidence 45566665542 12 5566665553 333556666677777777653 2366777766554322222258999
Q ss_pred HHHcCCeEEEcccccCcc
Q 024322 242 CDELGITLIAYCPIAQGE 259 (269)
Q Consensus 242 ~~~~gi~via~spl~~G~ 259 (269)
|+.+||.++..+.+..|+
T Consensus 253 a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 253 AHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHcCCCEEEECccchHH
Confidence 999999999887776665
No 222
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=43.77 E-value=55 Score=28.67 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHH-HHHHHcCcccEEEecCc----cHHHHHHHHHHHHhcCCCEeE
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL-GDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L-~~L~~~G~ir~iGvS~~----~~~~i~~~~~~~~~~~~~~~~ 221 (269)
.+.++..|+-.+ +|||.+-+-|-.. ..+.++++.. +-+++.|.--+.|=+-| ....+++.++.++..| |++
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG--f~~ 100 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG--FDA 100 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT---SE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC--CCE
Confidence 456677777777 7999999998654 2234444444 43444455545552221 1234556666666554 455
Q ss_pred EcccCCccCCCcch-hhHHHHHHHcCCeEEE
Q 024322 222 NQVNYSLIYRKPEE-NGVKAACDELGITLIA 251 (269)
Q Consensus 222 ~q~~~n~~~~~~~~-~~l~~~~~~~gi~via 251 (269)
+.+.=..+.-..++ ..+++.+++.|..+++
T Consensus 101 IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 101 IEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 44443333332221 2477777777776664
No 223
>PRK00208 thiG thiazole synthase; Reviewed
Probab=43.58 E-value=2.3e+02 Score=24.95 Aligned_cols=107 Identities=10% Similarity=-0.108 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCC
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
..++.+.-.+-.+-..+-++++.|=|=.+.++.. .+..+++++.++|.++|.+- +=+++-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4577777777777778888999888877777665 45889999999999999754 33455566676666553
Q ss_pred CEeEEcccCCccCCCcc--hhhHHHHHHH-cCCeEEEcc
Q 024322 218 PLASNQVNYSLIYRKPE--ENGVKAACDE-LGITLIAYC 253 (269)
Q Consensus 218 ~~~~~q~~~n~~~~~~~--~~~l~~~~~~-~gi~via~s 253 (269)
.+++++--=.++-.... ..++++...+ .++.||+-.
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIvea 182 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDA 182 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeC
Confidence 34454321122222110 1135666666 478887753
No 224
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=43.41 E-value=2.6e+02 Score=25.54 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=12.5
Q ss_pred HHHHHHHHHHCCCCEEEc
Q 024322 77 AKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 77 ~~~~l~~Al~~Gvn~~Dt 94 (269)
..+.-..|.++|+..++-
T Consensus 154 f~~aA~~a~~aGfDgVei 171 (338)
T cd02933 154 FRQAARNAIEAGFDGVEI 171 (338)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 334445677889998875
No 225
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=43.35 E-value=2.3e+02 Score=24.87 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=69.9
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEecCCC----------
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE--TLLGRFIKERKQRDPEVEVTVATKFAA---------- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se--~~lG~al~~~~~~~~R~~l~I~tK~~~---------- 137 (269)
+.++.+...+.++..++.|++-+-..-..|-+.. +-..| +++-.+.+... .|-.+++..-...
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~--lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~~~~~~~~~~a~~ 90 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPT--LSDEEHEAVIEAVVEAVN---GRVPVIAGTGSNNTAEAIELTKR 90 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhh--CCHHHHHHHHHHHHHHhC---CCCcEEeccCCccHHHHHHHHHH
Confidence 4578899999999999999987654433332111 11112 22333333322 1233333332211
Q ss_pred ------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHH
Q 024322 138 ------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 138 ------------~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 203 (269)
.| +..+.+.+.+-+++..+..+ +.+++.|.|......=..+.+++|.+...|..|=-|..+..
T Consensus 91 a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~---~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~~~~~ 167 (284)
T cd00950 91 AEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATD---LPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDLD 167 (284)
T ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCC---CCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECCCCHH
Confidence 11 22355667777777776532 67777777754333333455666665566555555555555
Q ss_pred HHHHHH
Q 024322 204 RLRNAY 209 (269)
Q Consensus 204 ~i~~~~ 209 (269)
.+.++.
T Consensus 168 ~~~~~~ 173 (284)
T cd00950 168 RVSELI 173 (284)
T ss_pred HHHHHH
Confidence 555554
No 226
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=43.25 E-value=2.3e+02 Score=24.84 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=56.8
Q ss_pred HHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCC-------CCCHHHHHHHHH
Q 024322 80 AFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-------RLGRQSVLAALK 152 (269)
Q Consensus 80 ~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~-------~~~~~~v~~~v~ 152 (269)
+++.|++.|...|........ ++.+ ..++++. -.+++...-+.... .-..+.+.+.++
T Consensus 87 vi~~al~~G~~iINsis~~~~---------~~~~-~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~ 151 (257)
T TIGR01496 87 VARAALEAGADIINDVSGGQD---------PAML-EVAAEYG-----VPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLE 151 (257)
T ss_pred HHHHHHHcCCCEEEECCCCCC---------chhH-HHHHHcC-----CcEEEEeCCCCCcccccCCCcccHHHHHHHHHH
Confidence 577788888888875433211 3333 3455543 46666654432111 011233334444
Q ss_pred HH---HHHhCCCccceEEeecCCCC----ChhHHHHHHHHHHHcCcccEEEecCcc
Q 024322 153 DS---LFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 153 ~s---L~~L~~d~iDll~lH~p~~~----~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (269)
+. +++.|++.-|+++=-..... ..-++++.++.+++-|.=-.+|+||-+
T Consensus 152 ~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 152 ARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 43 45568874444331111111 144667778888887877789999864
No 227
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=42.84 E-value=2.6e+02 Score=25.43 Aligned_cols=135 Identities=16% Similarity=0.087 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHH-CCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~e~~~~~l~~Al~-~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
.++..++++...+ .|++-+-- .| |+. +-.....+.+.++.......-..+-|.|+.. ..-+..+...+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~l---sG-GDP--Ll~~d~~L~~ll~~L~~i~~~~~IRi~tr~~----~~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILI---SG-GDP--LMAKDHELEWLLKRLEEIPHLVRLRIGTRLP----VVIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEE---EC-Ccc--ccCCHHHHHHHHHHHHhcCCccEEEeecCCC----ccCchhcCHHHH
Confidence 4777777777654 37775442 22 211 1112333444444332110124567788762 233455555666
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEec-----CccHHHHHHHHHHHHhcCCCE
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-----NYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS-----~~~~~~i~~~~~~~~~~~~~~ 219 (269)
+.|++.+...+.+..+-.|. .-.+++.++++.|++.|..-.+=.. |.+.+.+.++.+.+...|+.+
T Consensus 214 ~~L~~~~~~~~~vsh~nh~~-Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~p 284 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHCN-EITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGIIP 284 (331)
T ss_pred HHHHhcCCcEEEEccCCChH-hCCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCeec
Confidence 67777776544333221221 2357899999999999963222111 335677777777766666543
No 228
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.69 E-value=2.2e+02 Score=24.58 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCC-----CCChhHHHHHHHHHHHcCc-ccEEEecCc--------c-------HHHH
Q 024322 147 VLAALKDSLFRLGLSSVELYQLHWAG-----IWGNEGFIDGLGDAVEQGL-VKAVGVSNY--------S-------EKRL 205 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDll~lH~p~-----~~~~~~~~~~L~~L~~~G~-ir~iGvS~~--------~-------~~~i 205 (269)
+.+.++. .+++|.|+|++..-.... ..+..+.-+..+.+.+.|. |-+++++.+ + .+.+
T Consensus 18 ~~e~~~~-~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~ 96 (284)
T PRK13210 18 WEERLVF-AKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIM 96 (284)
T ss_pred HHHHHHH-HHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHH
Confidence 3444433 458899999985322111 0122333333445666674 445544431 1 2456
Q ss_pred HHHHHHHHhcCCCEeEEcccCCcc-CCCcch---------hhHHHHHHHcCCeEEEcccc
Q 024322 206 RNAYEKLKKRGIPLASNQVNYSLI-YRKPEE---------NGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 206 ~~~~~~~~~~~~~~~~~q~~~n~~-~~~~~~---------~~l~~~~~~~gi~via~spl 255 (269)
+++++.+...|.+...+. .+... ....+. ..+.+.++++||.+. +.+.
T Consensus 97 ~~~i~~a~~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~-lE~~ 154 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA-VEIM 154 (284)
T ss_pred HHHHHHHHHhCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE-EEec
Confidence 778888888777654432 11111 111110 247888889998554 4443
No 229
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.58 E-value=2.4e+02 Score=24.91 Aligned_cols=26 Identities=8% Similarity=0.017 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEccc
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAE 96 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~ 96 (269)
..+.++-.++++.-.+.||+.|+...
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 35668888899999999999999874
No 230
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=42.48 E-value=20 Score=26.71 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=25.9
Q ss_pred CccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
.++...++++++. --++++|+....+-.-.+-..+.++|+++|+.+...+.
T Consensus 4 ~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 4 LFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp SSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 3455555555542 23556555543332111112467777777777777765
No 231
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=42.42 E-value=1.8e+02 Score=28.84 Aligned_cols=118 Identities=12% Similarity=-0.030 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHHhCC--------CccceEEeecCCC------------------------CChhHHHHHHHHHHH
Q 024322 141 RLGRQSVLAALKDSLFRLGL--------SSVELYQLHWAGI------------------------WGNEGFIDGLGDAVE 188 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~--------d~iDll~lH~p~~------------------------~~~~~~~~~L~~L~~ 188 (269)
+++++-+.+.+++.-..|.. =|+|=|+..|--. ...+++.+.+++|-.
T Consensus 69 q~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~ 148 (717)
T COG4981 69 QVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGD 148 (717)
T ss_pred ccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhh
Confidence 57888888888887766621 2344443333111 125677777888888
Q ss_pred cCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCcc--CCCcch-h-hHHH---HHHH-cCCeEEEcccccCcc
Q 024322 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI--YRKPEE-N-GVKA---ACDE-LGITLIAYCPIAQGE 259 (269)
Q Consensus 189 ~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~--~~~~~~-~-~l~~---~~~~-~gi~via~spl~~G~ 259 (269)
.| +.++++--=+.++|+..+++++.+--.|.+.|++=.-. ++..+. + -++. ..+. .||.++.-+-++.-.
T Consensus 149 ~G-~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~ 226 (717)
T COG4981 149 DG-FPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPD 226 (717)
T ss_pred cC-ceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChh
Confidence 77 68999999999999999999887666788889863321 111111 1 1222 2222 378888776665543
No 232
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=42.39 E-value=2.7e+02 Score=25.50 Aligned_cols=20 Identities=0% Similarity=0.243 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHCCCCEEEc
Q 024322 75 KAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~Dt 94 (269)
.-+.+++..+.+.||.|++.
T Consensus 70 ~~~~~~~~d~~~dgV~Y~Ei 89 (345)
T cd01321 70 DYYRRLLEELYEDNVQYVEL 89 (345)
T ss_pred HHHHHHHHHHHHcCCEEEEE
Confidence 34556677777888888874
No 233
>PRK05660 HemN family oxidoreductase; Provisional
Probab=42.34 E-value=1.6e+02 Score=27.25 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEee-cCCC--------CC-hhHHHH----HHHHHHHcCcccEEEecCccH
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI--------WG-NEGFID----GLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH-~p~~--------~~-~~~~~~----~L~~L~~~G~ir~iGvS~~~~ 202 (269)
...+.+.+++.++..++ |+.|+|.++.+- .|+. .+ .++.++ +.+.|.+.|. ..+++|||..
T Consensus 169 pgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 169 PDQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 45788888888887665 889999988764 3331 11 222222 3355677776 5578998854
No 234
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=42.11 E-value=1.5e+02 Score=28.25 Aligned_cols=113 Identities=9% Similarity=0.095 Sum_probs=65.2
Q ss_pred HHHHHHHHHCCCCEEEcccc---------cCCCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEecCCCCCCCCCHHHH
Q 024322 78 KAAFDTSLDNGITFFDTAEV---------YGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSV 147 (269)
Q Consensus 78 ~~~l~~Al~~Gvn~~DtA~~---------Yg~g~~~~~~~se~~lG~al~~~~~~~-~R~~l~I~tK~~~~~~~~~~~~v 147 (269)
.+.++...+.|+|.+.-+-- .+.+.+ .+.+-++++...... +.-.+-+..=+ ...+.+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~------~~~~~~ai~~lr~~G~~~v~~dli~Gl----Pgqt~e~~ 221 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQP------EEMVARAVELLRAAGFESINFDLIYGL----PHQTVESF 221 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCC------HHHHHHHHHHHHhcCCCcEEEeEEEeC----CCCCHHHH
Confidence 34566677789998864321 232222 444445554432110 01122233333 45788999
Q ss_pred HHHHHHHHHHhCCCccceEEe-ecCCC-----------CC-hhHH----HHHHHHHHHcCcccEEEecCccH
Q 024322 148 LAALKDSLFRLGLSSVELYQL-HWAGI-----------WG-NEGF----IDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~l-H~p~~-----------~~-~~~~----~~~L~~L~~~G~ir~iGvS~~~~ 202 (269)
.+.++..+ +|+.++|.++.+ |.|.. .+ .++. ..+.+.|.+.|. ..+++++|..
T Consensus 222 ~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 222 RETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred HHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 99888876 699999999876 43321 11 2222 234577888887 5599999954
No 235
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=41.91 E-value=1.2e+02 Score=23.44 Aligned_cols=61 Identities=8% Similarity=0.017 Sum_probs=45.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC---ccceEEeecCCC--CChhHHHHHHHHHHHc
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d---~iDll~lH~p~~--~~~~~~~~~L~~L~~~ 189 (269)
|=-+.|+-|+| ....+..+++-+.++.+.+..+ -.|++++-.+.. .+..++.+.|+.|.+.
T Consensus 49 R~G~~VsKKvG---~AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 49 RFGLVVSKAVG---NAVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred EEEEEEeeecc---chhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 66788888987 4677888999999999887643 479999988765 4466777777666544
No 236
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=41.75 E-value=1.2e+02 Score=22.93 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=45.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CChhHHHHHHHHHHHc
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~---d~iDll~lH~p~~--~~~~~~~~~L~~L~~~ 189 (269)
|--+.|+-|++ ....+..+++.+.+.++.+.- ...|++++-.+.. .+..++.+.|..|.+.
T Consensus 39 R~GisVsKKvg---kAV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVG---NAVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccC---chhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 66778888876 467788899999999987642 3579999988765 4466777777766554
No 237
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=41.62 E-value=1.7e+02 Score=28.44 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc
Q 024322 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 145 ~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir 193 (269)
+...+.+++.+++||++ .|.+.. .-+..-...+.+.+++|+++|.|-
T Consensus 68 ~~~~~~~~~~l~~LgI~-~D~~~~-t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 68 DKYHEEFKDDWKWLNIS-FDRFIR-TTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCcc-CCCHHHHHHHHHHHHHHHHCCCEE
Confidence 45678889999999997 575321 111112456788899999999974
No 238
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=41.55 E-value=2.5e+02 Score=24.73 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=56.2
Q ss_pred HHHHHHHC--CCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH----HHHHHHH
Q 024322 80 AFDTSLDN--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS----VLAALKD 153 (269)
Q Consensus 80 ~l~~Al~~--Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~----v~~~v~~ 153 (269)
+++.|++. |...+.....-. .. ...+-..++++. ..+++.+--.. ....+.+. +++.++.
T Consensus 81 v~eaaL~~~~G~~iINsIs~~~-~~-------~~~~~~l~~~~g-----~~vv~m~~~~~-g~P~t~~~~~~~l~~~v~~ 146 (261)
T PRK07535 81 AIEAGLKVAKGPPLINSVSAEG-EK-------LEVVLPLVKKYN-----APVVALTMDDT-GIPKDAEDRLAVAKELVEK 146 (261)
T ss_pred HHHHHHHhCCCCCEEEeCCCCC-cc-------CHHHHHHHHHhC-----CCEEEEecCCC-CCCCCHHHHHHHHHHHHHH
Confidence 56667766 777776543321 01 223445666654 46666553100 01223333 3333333
Q ss_pred HHHHhCCC----ccceEEeec-CCCCChhHHHHHHHHHHHc--CcccEEEecCcc
Q 024322 154 SLFRLGLS----SVELYQLHW-AGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYS 201 (269)
Q Consensus 154 sL~~L~~d----~iDll~lH~-p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~ 201 (269)
+.+.|++ .+|-.+.-. .+.....++++.++.+++. |.=-.+|+||-+
T Consensus 147 -a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 147 -ADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred -HHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 3466775 333332211 0111255778888999988 888899999864
No 239
>PRK10551 phage resistance protein; Provisional
Probab=41.52 E-value=2e+02 Score=27.99 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=69.2
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCC--CCChhHHHHHHHHHHHcCcccEEEecCcc--HH
Q 024322 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNYS--EK 203 (269)
Q Consensus 128 ~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~--~~~~~~~~~~L~~L~~~G~ir~iGvS~~~--~~ 203 (269)
.+.|+-.+.. .....+.+...+.+.++.++.+..- +.+.-.+ .....+..+.++.|++.|- .|.+.+|. ..
T Consensus 349 ~~~lsINis~--~~l~~~~f~~~l~~~l~~~~~~~~~-LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~s 423 (518)
T PRK10551 349 GAKLGINISP--AHLHSDSFKADVQRLLASLPADHFQ-IVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHS 423 (518)
T ss_pred CcEEEEEeCH--HHHCCchHHHHHHHHHHhCCCCcce-EEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCch
Confidence 4445445543 3344455777888888888876432 3333222 2233556788899999995 56666663 23
Q ss_pred HHHHHHHHHHhcCCCEeEEcccCCccCCCcch-------hhHHHHHHHcCCeEEEccc
Q 024322 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCP 254 (269)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~l~~~~~~~gi~via~sp 254 (269)
.+..+.. .+++++-+.-+.+..-... ..+++.|++.|+.+++-+.
T Consensus 424 sl~~L~~------l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGV 475 (518)
T PRK10551 424 ALIYLER------FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGV 475 (518)
T ss_pred hHHHHHh------CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3343322 4677777765544321111 2489999999999998653
No 240
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=41.42 E-value=2.2e+02 Score=24.21 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.+.++..++.+.|.+.|+.-+-..+.|-. ...+.|+. .++-|+|=++.+....+.+.-...+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~v~-----------~a~~~l~~-------~~v~v~tVigFP~G~~~~~~K~~E~ 76 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSYVP-----------LAKELLKG-------TEVRICTVVGFPLGASTTDVKLYET 76 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHHHH-----------HHHHHcCC-------CCCeEEEEeCCCCCCCcHHHHHHHH
Confidence 46699999999999999988876555432 33444432 3677777776533344455455555
Q ss_pred HHHHHHhCCCccceEEeecC-CCCChhHHHHHHHHHHHc--Cc-ccEE-EecCccHHHHHHHHHHHHhcCCCEeEEccc-
Q 024322 152 KDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQ--GL-VKAV-GVSNYSEKRLRNAYEKLKKRGIPLASNQVN- 225 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p-~~~~~~~~~~~L~~L~~~--G~-ir~i-GvS~~~~~~i~~~~~~~~~~~~~~~~~q~~- 225 (269)
++.++ +|.|-||+++--.. .....+.+.+.|.++++. |+ ++-| -.+-.+.+++..+.+.+...| .+++++.
T Consensus 77 ~~Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaG--ADfvKTsT 153 (211)
T TIGR00126 77 KEAIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAG--ADFVKTST 153 (211)
T ss_pred HHHHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEeCC
Confidence 65554 69999999876542 223456777778777765 54 3332 222346678888888776665 5555555
Q ss_pred -CCccCCCcchhhHHHHHHHcCCeEEEc
Q 024322 226 -YSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 226 -~n~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
|..-.-..+.-.++...-...++|-+.
T Consensus 154 Gf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 154 GFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred CCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 765433333212333322335666554
No 241
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=41.41 E-value=45 Score=30.35 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHCCCC-EEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024322 76 AAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 76 ~~~~~l~~Al~~Gvn-~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~s 154 (269)
...+.|.++...||. |||. -| -.++=..|..... +..+.++.-++.+.. -.++.+...-+-.
T Consensus 211 ~~~~aL~r~~P~GIDiYfeN---VG----------G~~lDavl~nM~~---~gri~~CG~ISqYN~-~~~~~~~~l~~ii 273 (343)
T KOG1196|consen 211 DLSAALKRCFPEGIDIYFEN---VG----------GKMLDAVLLNMNL---HGRIAVCGMISQYNL-ENPEGLHNLSTII 273 (343)
T ss_pred CHHHHHHHhCCCcceEEEec---cC----------cHHHHHHHHhhhh---ccceEeeeeehhccc-cCCccccchhhhe
Confidence 455567777788887 6663 22 2334444444442 689999988864211 2235555555566
Q ss_pred HHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEE
Q 024322 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (269)
Q Consensus 155 L~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~i 195 (269)
-+|+.+.. .+....-| ...+.++.|..+.++|||+++
T Consensus 274 ~Kr~~iqg--flv~d~~d--~~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 274 YKRIRIQG--FLVSDYLD--KYPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred eeeEEeee--EEeechhh--hhHHHHHHHHHHHhcCceEEe
Confidence 67776543 22222222 247889999999999999976
No 242
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=41.40 E-value=1.7e+02 Score=28.63 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=66.9
Q ss_pred cccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CccceEEeecCC
Q 024322 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAG 172 (269)
Q Consensus 94 tA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~-d~iDll~lH~p~ 172 (269)
.+-.||. ++.+-++|++....++.+=++|.|=+- ...--|.+..-+++.-+...+ +-+++..+|.|+
T Consensus 120 ~~aVfGG---------~~~L~e~I~~~~~~y~P~~I~V~tTC~---~evIGDDi~a~i~~~~~~~~~p~~~pVi~v~Tpg 187 (515)
T TIGR01286 120 DAAVFGG---------LKNMVDGLQNCYALYKPKMIAVSTTCM---AEVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPS 187 (515)
T ss_pred CceeeCc---------HHHHHHHHHHHHHhcCCCEEEEeCCcH---HHHhhccHHHHHHHHHHhcCCCCCCceEEeeCCC
Confidence 3456787 888889998776655456677777663 233344455555555555443 246899999998
Q ss_pred CCC-----hhHHHHHHH-HHHH----------cCcccEEE-ecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 173 IWG-----NEGFIDGLG-DAVE----------QGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 173 ~~~-----~~~~~~~L~-~L~~----------~G~ir~iG-vS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
... .+.+++++. .+.+ .++|--|| +..+ +..++++.+..+..|+++.+
T Consensus 188 F~Gs~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 188 FVGSHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred CcccHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 733 333444433 3322 25566664 4333 44555555556666766554
No 243
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=41.36 E-value=29 Score=34.64 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=33.5
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir 193 (269)
-.|+.||++ |++-+|+.|+.+.+....+|+.|...|-+.
T Consensus 413 L~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 413 LQLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred HHHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCccc
Confidence 348899998 999999999988899999999998877665
No 244
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.14 E-value=1.5e+02 Score=25.34 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCc---ccEEEecCc-cHHHHHHHHHHHHhcCC
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL---VKAVGVSNY-SEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~---ir~iGvS~~-~~~~i~~~~~~~~~~~~ 217 (269)
.+.+...+.+ +.|-+-|+..+.+=+ ......+.+++|+++-. =-.||..+. +.++++.+.+. |-
T Consensus 22 ~~~~~a~~~~-~al~~~Gi~~iEit~-------~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----GA 89 (213)
T PRK06552 22 ESKEEALKIS-LAVIKGGIKAIEVTY-------TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----GA 89 (213)
T ss_pred CCHHHHHHHH-HHHHHCCCCEEEEEC-------CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----CC
Confidence 3455444433 445555655555333 23456777777776531 145888876 78888888664 44
Q ss_pred CEeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
.|.+ +|. ... +++++|+++||.++.
T Consensus 90 ~Fiv-----sP~---~~~-~v~~~~~~~~i~~iP 114 (213)
T PRK06552 90 QFIV-----SPS---FNR-ETAKICNLYQIPYLP 114 (213)
T ss_pred CEEE-----CCC---CCH-HHHHHHHHcCCCEEC
Confidence 4544 332 222 589999999988775
No 245
>PRK10508 hypothetical protein; Provisional
Probab=41.10 E-value=38 Score=30.97 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHH
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~ 188 (269)
.+++.|.+.+++..+++|+|.+ +++.+. .+.++.++.++-|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~-~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI-FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC-CCHHHHHHHHHHHHH
Confidence 6789999999999999998877 333332 355666666655543
No 246
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=40.72 E-value=1.3e+02 Score=23.16 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=46.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CChhHHHHHHHHHHHc
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~---d~iDll~lH~p~~--~~~~~~~~~L~~L~~~ 189 (269)
|--+.|+-|++. ....+..+++.+.+.++.+.- ...|++++-.+.. .+..+..+.|..|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 556677777653 467788899999999987742 3589999998865 4577888888777655
No 247
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=40.55 E-value=1.4e+02 Score=25.84 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhcCCC
Q 024322 203 KRLRNAYEKLKKRGIP 218 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~~ 218 (269)
+++..+++.+.+.|++
T Consensus 46 ~Hl~al~~~a~~~gv~ 61 (223)
T PF06415_consen 46 DHLFALIKLAKKQGVK 61 (223)
T ss_dssp HHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4444444444444443
No 248
>PLN02389 biotin synthase
Probab=40.30 E-value=3.1e+02 Score=25.57 Aligned_cols=127 Identities=14% Similarity=0.153 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEccccc-CCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAEVY-GSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~~Y-g~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
..+.|+..+.++.+.+.|++.|--...+ +.... +..-+.+-+.++.... ..+.|+...+ ..+.+
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e---~~~~e~i~eiir~ik~----~~l~i~~s~G----~l~~E---- 179 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGR---KTNFNQILEYVKEIRG----MGMEVCCTLG----MLEKE---- 179 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCC---hhHHHHHHHHHHHHhc----CCcEEEECCC----CCCHH----
Confidence 4678999999999999999987532111 11100 0013455566665531 2344554443 23333
Q ss_pred HHHHHHHHhCCCccceEEeec-C----C---CCChhHHHHHHHHHHHcCccc----EEEecCccHHHHHHHHHHHHhc
Q 024322 150 ALKDSLFRLGLSSVELYQLHW-A----G---IWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKR 215 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~-p----~---~~~~~~~~~~L~~L~~~G~ir----~iGvS~~~~~~i~~~~~~~~~~ 215 (269)
.-+.|+..|+|.+-.- +.. + . ....++.++.++.+++.|.-- -+|+ +.+.+.+...+...+..
T Consensus 180 -~l~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~l~~Lr~L 254 (379)
T PLN02389 180 -QAAQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGLLHTLATL 254 (379)
T ss_pred -HHHHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHHHHHHHhc
Confidence 2334555577654331 111 1 0 023678899999999998521 2344 33454444444444443
No 249
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=40.29 E-value=3.2e+02 Score=25.74 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 024322 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (269)
Q Consensus 77 ~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~ 156 (269)
+.+-=-+|+|.|+--+-+|. | ...+--++-..-.. -++++-++++ +..+. ..+..+|+
T Consensus 66 vlE~RiAaLEGG~aa~a~aS----G--------~AA~~~ai~~la~a--GD~iVss~~L----YGGT~----~lf~~tl~ 123 (426)
T COG2873 66 VLEERIAALEGGVAALAVAS----G--------QAAITYAILNLAGA--GDNIVSSSKL----YGGTY----NLFSHTLK 123 (426)
T ss_pred HHHHHHHHhhcchhhhhhcc----c--------hHHHHHHHHHhccC--CCeeEeeccc----cCchH----HHHHHHHH
Confidence 33444578999998887763 2 22333333333221 2777777777 44444 44566789
Q ss_pred HhCCC
Q 024322 157 RLGLS 161 (269)
Q Consensus 157 ~L~~d 161 (269)
++|++
T Consensus 124 ~~Gi~ 128 (426)
T COG2873 124 RLGIE 128 (426)
T ss_pred hcCcE
Confidence 99954
No 250
>PRK10658 putative alpha-glucosidase; Provisional
Probab=40.23 E-value=1.6e+02 Score=29.84 Aligned_cols=90 Identities=14% Similarity=0.287 Sum_probs=57.8
Q ss_pred CccceEEeecCCCCChhHHHHHHHHHHHc---------CcccEEEec-CccHHHHHHHHHHHHhcCCCEeEEcccCCccC
Q 024322 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQ---------GLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 161 d~iDll~lH~p~~~~~~~~~~~L~~L~~~---------G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (269)
..||.+++..|+ ..++++...+|--. |...+-+.. +.+.+.+.++++..++.++|++++.+.+--..
T Consensus 234 ~~ldyy~~~G~t---p~~v~~~Yt~LTGrp~lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~ 310 (665)
T PRK10658 234 EYLEYFVIDGPT---PKEVLDRYTALTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMK 310 (665)
T ss_pred CcEEEEEEeCCC---HHHHHHHHHHHhCCCCCCchhhhheeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhc
Confidence 579999999875 35666665554322 221111111 34567788888888899999998877642111
Q ss_pred C------------CcchhhHHHHHHHcCCeEEEcc
Q 024322 231 R------------KPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 231 ~------------~~~~~~l~~~~~~~gi~via~s 253 (269)
. -++..++++..+++|+.++.|-
T Consensus 311 ~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i 345 (665)
T PRK10658 311 EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWI 345 (665)
T ss_pred CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEec
Confidence 1 1122369999999999999873
No 251
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=40.22 E-value=2.1e+02 Score=23.53 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHhCCCccceE
Q 024322 143 GRQSVLAALKDSLFRLGLSSVELY 166 (269)
Q Consensus 143 ~~~~v~~~v~~sL~~L~~d~iDll 166 (269)
+++.+.+.++. +.+.|.|+|-+-
T Consensus 9 ~~~~~~~~~~~-~~~~g~d~i~~~ 31 (210)
T TIGR01163 9 DFARLGEEVKA-VEEAGADWIHVD 31 (210)
T ss_pred CHHHHHHHHHH-HHHcCCCEEEEc
Confidence 34444444443 234555555554
No 252
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=40.19 E-value=1.9e+02 Score=30.00 Aligned_cols=98 Identities=12% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc--CcccEEEecCccHHHHHHHHHHHHhcCCCE
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (269)
...+.+++..+++...--...--+|+|+..+... .+..++|.+..++ ..+.+|-+++.....+..+.+.
T Consensus 100 ~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR-------- 170 (824)
T PRK07764 100 GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR-------- 170 (824)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh--------
Confidence 3566676655544433333456788888876544 4678888888888 8899999886443333333222
Q ss_pred eEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 024322 220 ASNQVNYSLIYRKPEENGVKAACDELGITL 249 (269)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v 249 (269)
+..++|..+.......-|.+.|++.||.+
T Consensus 171 -c~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 171 -THHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred -eeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 22334444433222222556666677653
No 253
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=40.13 E-value=94 Score=29.35 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHCCCCEE-EcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEe--------cCCCCCCCCC
Q 024322 73 KMKAAKAAFDTSLDNGITFF-DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--------KFAALPWRLG 143 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~-DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~t--------K~~~~~~~~~ 143 (269)
+.+.=.+-+..|.+.|-..+ |-+ ..|+ -..+.+.+-+. .++=|.| +......+.+
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLS-tggd---------l~~iR~~il~~------~~vpvGTVPiYqa~~~~~~~~~~~t 137 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLS-TGGD---------LDEIRRAILEN------SPVPVGTVPIYQAAIRKGGSIVDMT 137 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE----STT---------HHHHHHHHHHT-------SS-EEE-HHHHHHHHTTT-GGG--
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcC-CCCC---------HHHHHHHHHHh------CCCccccchHHHHHHHhCCChhhCC
Confidence 33444567889999998754 433 3344 44444444322 2333333 1111225788
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEec----------------CccHHHHHH
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS----------------NYSEKRLRN 207 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS----------------~~~~~~i~~ 207 (269)
.+.+.+.+++..+. =+|.+-+|.-- ..+.++.|++++++--| || |.=-+++++
T Consensus 138 ~d~~~~~ie~qa~~----GVDfmtiH~gi------t~~~~~~~~~~~R~~gi-VSRGGs~l~~WM~~n~~ENPly~~fD~ 206 (420)
T PF01964_consen 138 EDDFFDVIEKQAKD----GVDFMTIHCGI------TRETLERLKKSGRIMGI-VSRGGSILAAWMLHNGKENPLYEHFDR 206 (420)
T ss_dssp HHHHHHHHHHHHHH----T--EEEE-TT--------GGGGGGGT--TSSS-----HHHHHHHHHHHHHTS--HHHHTHHH
T ss_pred HHHHHHHHHHHHHc----CCCEEEEccch------hHHHHHHHhhhccccCc-cccchHHHHHHHHhcCCcCcHHHhHHH
Confidence 99999999998876 48999999742 24556667777665433 11 111256777
Q ss_pred HHHHHHhcCCCEeEEcccCCc---cCCCcc--------hhhHHHHHHHcCCeEEEccc
Q 024322 208 AYEKLKKRGIPLASNQVNYSL---IYRKPE--------ENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 208 ~~~~~~~~~~~~~~~q~~~n~---~~~~~~--------~~~l~~~~~~~gi~via~sp 254 (269)
+++++++..+-++. ---+.+ .+.... ..+|.+.|+++||+++.=+|
T Consensus 207 lLeI~k~yDVtLSL-GDglRPG~i~Da~D~aQi~EL~~lgeL~~rA~e~gVQvMVEGP 263 (420)
T PF01964_consen 207 LLEIAKEYDVTLSL-GDGLRPGCIADATDRAQIQELIILGELVKRAREAGVQVMVEGP 263 (420)
T ss_dssp HHHHHTTTT-EEEE---TT--SSGGGTT-HHHHHHHHHHHHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHhCeeEec-ccccCCCCcCCCCcHHHHHHHHHHHHHHHHHHHCCCeEEeeCC
Confidence 77777655432221 001111 111100 02578889999999998776
No 254
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=40.03 E-value=3.4e+02 Score=25.93 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC---hhHH---HHH
Q 024322 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGF---IDG 182 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R-~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~---~~~~---~~~ 182 (269)
|+.|-++|.+..+..|+ +-++|.+=+. ...--+.++..+++.-++.+ .+.++.+|.|+... .... ..+
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~---~~lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~a 183 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCT---TALIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQSKGHHVANIT 183 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCh---HHhhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCcccchHHHHHHHH
Confidence 88888988877644432 3366666653 23334445555555444432 26799999988733 1222 222
Q ss_pred -HHHHH--------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEe
Q 024322 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 183 -L~~L~--------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (269)
++++. ..+.|--||-.++ ...++++.+..+..|+.+.
T Consensus 184 l~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v~ 229 (457)
T TIGR01284 184 WINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQVL 229 (457)
T ss_pred HHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeEE
Confidence 23333 1356778885554 3344555555666676654
No 255
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=39.99 E-value=2e+02 Score=27.65 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------hhHHHHH
Q 024322 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R-~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~------~~~~~~~ 182 (269)
|+.|-++|.+...+++. +-++|.|=+. ...--|.+..-+++.-++++ ++++.+|.|.... .+.+.++
T Consensus 116 e~kL~~aI~e~~~~~~P~~~I~V~tTC~---~~lIGDDi~av~~~~~~~~~---~pVi~v~t~gf~G~s~~~G~~~a~~a 189 (466)
T TIGR01282 116 DKKLKKAIDEIEELFPLNKGISIQSECP---VGLIGDDIEAVAKKASKELG---KPVVPVRCEGFRGVSQSLGHHIANDA 189 (466)
T ss_pred HHHHHHHHHHHHHhCCcccEEEEeCCCh---HHHhccCHHHHHHHHhhhcC---CcEEEEeCCCcCCchhhHHHHHHHHH
Confidence 88889999887765534 5577777663 22333344555555444543 6889999988632 1223333
Q ss_pred HHH-HHH----------cCcccEEEecCc--cHHHHHHHHHHHHhcCCCEe
Q 024322 183 LGD-AVE----------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 183 L~~-L~~----------~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~ 220 (269)
+.+ |.. .++|--||-.++ +.+.|+++ .+..|+++.
T Consensus 190 i~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~l---L~~~Gi~v~ 237 (466)
T TIGR01282 190 VRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRIL---LEEIGLRVV 237 (466)
T ss_pred HHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHH---HHHcCCeEE
Confidence 322 321 256778885554 34455555 445566544
No 256
>TIGR00035 asp_race aspartate racemase.
Probab=39.92 E-value=2e+02 Score=24.44 Aligned_cols=63 Identities=6% Similarity=-0.102 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-------------hhHHHHHHHHHHHcCcccEEEecCccHHH
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-------------NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-------------~~~~~~~L~~L~~~G~ir~iGvS~~~~~~ 204 (269)
.-+.+.+++-++..-.+.+-++++++.+++|+..+ ...+.+.++.|.+.| +..|-++.++...
T Consensus 13 ~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 13 LATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 34556677777777788888999999999986511 224555666776655 7999998876544
No 257
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=39.90 E-value=1.7e+02 Score=24.97 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCC-CCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS-RASFGAINSE-TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~-g~~~~~~~se-~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
++++.....+.+.+.|..|+=|+.-|+. |.+ ... +.+.+.++ ++ +..|... .-.+.+...+.
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat----~~dv~~m~~~v~--------~~--v~IKaaG--Girt~~~a~~~ 193 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGAT----VEDVRLMRNTVG--------DT--IGVKASG--GVRTAEDAIAM 193 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC----HHHHHHHHHHhc--------cC--CeEEEeC--CCCCHHHHHHH
Confidence 3467778999999999999999988863 332 001 23333332 22 2233322 22478888888
Q ss_pred HHHHHHHhCCCcc
Q 024322 151 LKDSLFRLGLSSV 163 (269)
Q Consensus 151 v~~sL~~L~~d~i 163 (269)
++.--.|+|++..
T Consensus 194 i~aGa~riGts~~ 206 (211)
T TIGR00126 194 IEAGASRIGASAG 206 (211)
T ss_pred HHHhhHHhCcchH
Confidence 8888899998753
No 258
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=39.81 E-value=2.7e+02 Score=24.60 Aligned_cols=131 Identities=8% Similarity=0.013 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccC-------CCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC-CCCCC
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYG-------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLG 143 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg-------~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~-~~~~~ 143 (269)
.+.++..++.....+.|+..||....-- .+.. -++.+..+-+..+ +.++......-.. .+..-
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~-----~~e~i~~~~~~~~----~~~l~~~~r~~~~~~~~~~ 88 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNED-----PWERLRELRKAMP----NTPLQMLLRGQNLVGYRHY 88 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCC-----HHHHHHHHHHhCC----CCceehhcccccccCccCC
Confidence 4557778888888899999999864210 1111 1344433333322 3344433332100 01112
Q ss_pred HHH-HHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEe-----cCccHHHHHHHHHHHHhcC
Q 024322 144 RQS-VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV-----SNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 144 ~~~-v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGv-----S~~~~~~i~~~~~~~~~~~ 216 (269)
|.. .+..++.+. +.++|.|-++. |- .+.+...+.++..|+.|+.-.+.+ +.++.+.+.++.+.+...|
T Consensus 89 p~~~~~~di~~~~-~~g~~~iri~~---~~-~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 89 PDDVVELFVEKAA-KNGIDIFRIFD---AL-NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred CcHHHHHHHHHHH-HcCCCEEEEee---cC-ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 222 233333333 33544433322 11 124556667777777775433333 3455666666655555444
No 259
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=39.78 E-value=2.2e+02 Score=23.71 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=59.5
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCC--ChhHHHHHHHHHHHcCcccEEEecC-ccHHHHHHHHHHHHhcCCCEeEEccc
Q 024322 149 AALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 149 ~~v~~sL~~L~~d~iDll~lH~p~~~--~~~~~~~~L~~L~~~G~ir~iGvS~-~~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (269)
+.++...+.||+.+ +.+.-+... -.++..+.|.+++++| +..+-.-. ++..+-.+.-+.|.+.|+.+
T Consensus 48 e~~~~~A~~lgipl---~~i~~~~~~e~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~~~~~~gl~~------ 117 (194)
T cd01994 48 ELLELQAEAMGIPL---IRIEISGEEEDEVEDLKELLRKLKEEG-VDAVVFGAILSEYQRTRVERVCERLGLEP------ 117 (194)
T ss_pred HHHHHHHHHcCCcE---EEEeCCCCchHHHHHHHHHHHHHHHcC-CCEEEECccccHHHHHHHHHHHHHcCCEE------
Confidence 45566778888653 333322211 1356667777777774 66554443 34555555555676666543
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEEcccccCc
Q 024322 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G 258 (269)
+.|+.+...+ ++++..-+.|+.++--+.-+.|
T Consensus 118 ~~PLW~~~~~-~ll~e~~~~g~~~~iv~v~~~~ 149 (194)
T cd01994 118 LAPLWGRDQE-ELLREMIEAGFKAIIIKVAAEG 149 (194)
T ss_pred EecccCCCHH-HHHHHHHHcCCeEEEEEeccCC
Confidence 3466666555 5888888999887766655554
No 260
>PF13289 SIR2_2: SIR2-like domain
Probab=39.78 E-value=1e+02 Score=23.53 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCC--EeEEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 024322 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~--~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
...+++.|.++.....+-.||.|--+. .++.++..+....-. ....-+ .+........++.++.||.+|
T Consensus 73 ~~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 73 NPWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKSRPRHYIV-----IPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCCCccEEEE-----EcCCchHHHHHHHHHcCCEEC
Confidence 356778888888888999999995554 555555444332211 111111 111111246788999999875
No 261
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=39.18 E-value=2.4e+02 Score=26.60 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC--cccEEE-e-cCccHHHHHHHHHHHHhcCC
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVG-V-SNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G--~ir~iG-v-S~~~~~~i~~~~~~~~~~~~ 217 (269)
++++...+-+.+.++. .++.+|-.|-.... |+.+.+|.++- .+.-+| = ..++++.++++++. -
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D---~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~-----~ 327 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD---WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEK-----K 327 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC---HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHh-----C
Confidence 4455555555555444 45777777754223 56666666662 444333 2 12478888888764 2
Q ss_pred CEeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
-.+++|+..+-+-.-.+-.++...|+++|+.++.
T Consensus 328 a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 328 AANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 4677777666544322223588999999999864
No 262
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=39.17 E-value=2.1e+02 Score=26.34 Aligned_cols=89 Identities=18% Similarity=0.074 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.+++.+.++.+.+.|+..+-+--.||- ...+.+.+++.++
T Consensus 142 s~~~~~~a~~~l~~~g~~~v~~dli~Gl---------------------------------------Pgqt~~~~~~tl~ 182 (375)
T PRK05628 142 TPGRAVAAAREARAAGFEHVNLDLIYGT---------------------------------------PGESDDDWRASLD 182 (375)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEee-----------------cCCCCChhHHHHHHHHHHHcCcccEEEecCcc
Q 024322 153 DSLFRLGLSSVELYQLH-----------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH-----------------~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (269)
..++ |+.+++.++.+. .|+.....+.+..+.+.-++.--..+++|||.
T Consensus 183 ~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye~s~fa 247 (375)
T PRK05628 183 AALE-AGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYEVSNWA 247 (375)
T ss_pred HHHh-cCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeeeecccc
No 263
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=39.10 E-value=3.5e+02 Score=25.93 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=66.2
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC---CC--ccceEEe
Q 024322 95 AEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG---LS--SVELYQL 168 (269)
Q Consensus 95 A~~Yg~g~~~~~~~se~~lG~al~~~~~~~~-R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~---~d--~iDll~l 168 (269)
.-.||. |+.+-++|++...+.+ .+=++|.|=+. ...--|.++..+++.-++++ .. .+.++.+
T Consensus 71 d~VfGg---------~~~L~~ai~~~~~~~~~p~~i~v~ttc~---~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v 138 (461)
T TIGR02931 71 GAVFGA---------LDRVEEAVDVLLTRYPDVKVVPIITTCS---TEIIGDDVDGLISKLNEELLKEKFPDREVHLIPI 138 (461)
T ss_pred ceEECc---------HHHHHHHHHHHHHhcCCCCEEEEECCch---HHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEe
Confidence 346786 8888899987765442 34455666553 34445556666666655552 11 3678999
Q ss_pred ecCCCCC-----hhHHHHHHH-HHHH----cCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 169 HWAGIWG-----NEGFIDGLG-DAVE----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 169 H~p~~~~-----~~~~~~~L~-~L~~----~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
|.|+... .+.++++|. .+.+ .++|--||-.. ++..++++.+..+..|+++.+
T Consensus 139 ~tpgF~gs~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~-~~~D~~elk~lL~~~Gl~v~~ 200 (461)
T TIGR02931 139 HTPSFVGSMITGYDVAVHDFVKHFAKKDKPNDKINLITGWV-NPGDVKELKHLLEEMDIEANV 200 (461)
T ss_pred eCCCCCCcHHHHHHHHHHHHHHHHccCCCCCCcEEEECCCC-ChhhHHHHHHHHHHcCCceEE
Confidence 9988733 333443333 2222 35677777542 445556666656666766553
No 264
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=38.81 E-value=2e+02 Score=24.40 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=47.0
Q ss_pred HHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 024322 81 FDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL 160 (269)
Q Consensus 81 l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~ 160 (269)
+..|.++|++++=.- .+.+ +++ .++.+...+..+..+. +-+.+..+. +.+++.+.+. ++.++
T Consensus 16 a~~~~~~Gad~iGfI-~~~~--S~R-~V~~~~a~~i~~~~~~---~i~~VgVf~------~~~~~~i~~~----~~~~~- 77 (210)
T PRK01222 16 AEAAAELGADAIGFV-FYPK--SPR-YVSPEQAAELAAALPP---FVKVVGVFV------NASDEEIDEI----VETVP- 77 (210)
T ss_pred HHHHHHcCCCEEEEc-cCCC--CCC-cCCHHHHHHHHHhCCC---CCCEEEEEe------CCCHHHHHHH----HHhcC-
Confidence 456667888765432 1111 100 1235555555554431 122222222 2344444443 34444
Q ss_pred CccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCc
Q 024322 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 161 d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~ 200 (269)
+|++|||.... .+.++.|.+...-..++.+.+.+.
T Consensus 78 --~d~vQLHg~e~---~~~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 78 --LDLLQLHGDET---PEFCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred --CCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCCH
Confidence 78999998642 333344433222357888888753
No 265
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=38.79 E-value=3e+02 Score=24.94 Aligned_cols=136 Identities=16% Similarity=0.096 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHC-CCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~-Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
+.++..+++...-+. |++.+--+- |.. +-..+..+-+.+.......-=+.+-|.||. ....+..+...+
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltG--GEP----L~~~d~~L~~ll~~l~~i~~~~~iri~tr~----~~~~p~rit~el 195 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSG--GDP----LMAKDHRLDWLLNLLEQIPHLKRLRIHTRL----PVVIPDRITSGL 195 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeC--ccc----ccCCchHHHHHHHHHHhCCCCcEEEEecCc----ceeeHHHhhHHH
Confidence 446666666655433 787554221 221 111233444444332211001467778877 345555666666
Q ss_pred HHHHHHhCCCccceEEeecCCC-CChhHHHHHHHHHHHcCcccEEE-ec----CccHHHHHHHHHHHHhcCCCEe
Q 024322 152 KDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVG-VS----NYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~L~~~G~ir~iG-vS----~~~~~~i~~~~~~~~~~~~~~~ 220 (269)
-+.|++.+.+.+ +.+|-..+ .-.+++.++++.|++.|..-.+= +- |-+.+.+.++.+.+...|+.+-
T Consensus 196 ~~~L~~~~~~~~--~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~py 268 (321)
T TIGR03821 196 CDLLANSRLQTV--LVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPY 268 (321)
T ss_pred HHHHHhcCCcEE--EEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeC
Confidence 667777665433 23464221 23577999999999999632111 11 2367889998888877776443
No 266
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=38.31 E-value=1.7e+02 Score=25.92 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCCEEEcccccCCC-CCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024322 76 AAKAAFDTSLDNGITFFDTAEVYGSR-ASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 76 ~~~~~l~~Al~~Gvn~~DtA~~Yg~g-~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~s 154 (269)
+...+.+.|++.|..|+=|+.-|+.+ .+ ...-+++-+++++... .++ +.-|... .-.+.+....-++..
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gAt---~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~ag 217 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNAT---LEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLALA 217 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCCC---HHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHHH
Confidence 47788999999999999999998743 32 0112344444443210 122 3445533 347788899999999
Q ss_pred HHHhCCCccc
Q 024322 155 LFRLGLSSVE 164 (269)
Q Consensus 155 L~~L~~d~iD 164 (269)
-+.||.++++
T Consensus 218 ~~~lg~~~~~ 227 (257)
T PRK05283 218 DEILGADWAD 227 (257)
T ss_pred HHHhChhhcC
Confidence 9999999887
No 267
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=38.13 E-value=2.4e+02 Score=25.00 Aligned_cols=53 Identities=9% Similarity=-0.117 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHh------CCCccceEEeecCCC--CChhHHHHHHHHHHHcCccc
Q 024322 141 RLGRQSVLAALKDSLFRL------GLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L------~~d~iDll~lH~p~~--~~~~~~~~~L~~L~~~G~ir 193 (269)
.++.+.-.+-.+-+.+-+ +++.|-|=.+..+.. .++.|++++-+.|+++|-+-
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V 140 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV 140 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE
Confidence 455554444444444444 566666555555544 45789999999999999644
No 268
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=38.05 E-value=2.5e+02 Score=26.73 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=68.9
Q ss_pred HHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh
Q 024322 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (269)
Q Consensus 79 ~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L 158 (269)
..|+++++.|-- -+.-.||+..+ -...+++.|.+.. ..++.-.+-+ ..+-..+++.++++.+.+
T Consensus 37 ~~lrr~v~~~~l--~SmIl~GPPG~-----GKTTlA~liA~~~----~~~f~~~sAv-----~~gvkdlr~i~e~a~~~~ 100 (436)
T COG2256 37 KPLRRAVEAGHL--HSMILWGPPGT-----GKTTLARLIAGTT----NAAFEALSAV-----TSGVKDLREIIEEARKNR 100 (436)
T ss_pred chHHHHHhcCCC--ceeEEECCCCC-----CHHHHHHHHHHhh----CCceEEeccc-----cccHHHHHHHHHHHHHHH
Confidence 368889988642 22335775322 2788999998765 2344333332 456778999999998777
Q ss_pred CCCccceEEe---ecCCCCChhHHHHHHHHHHHcCcccEEEecCccH
Q 024322 159 GLSSVELYQL---HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 159 ~~d~iDll~l---H~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~ 202 (269)
+...==++++ |+.+ ...-++|.-.++.|.|-.||-++-|+
T Consensus 101 ~~gr~tiLflDEIHRfn----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 101 LLGRRTILFLDEIHRFN----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred hcCCceEEEEehhhhcC----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 6433334444 5543 45567788889999999999886543
No 269
>PRK15108 biotin synthase; Provisional
Probab=38.03 E-value=2.8e+02 Score=25.42 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee--cCCCCChhHHHHHHHHHHHcCcccEEEecC--ccHHHHHHHHH
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLH--WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYE 210 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH--~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~--~~~~~i~~~~~ 210 (269)
.+++.+.+.++. ..++|+..+ .+... .|.....+.+.+.+..+++.|. .+.+|+ .+.+.++++.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~Lke 144 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLAN 144 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHH
Confidence 567777776664 456788777 23333 3322334566666777776653 233444 46666666644
No 270
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=37.44 E-value=2.8e+02 Score=24.15 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEE-eecCCC--CCh----hHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHh
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGN----EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~-lH~p~~--~~~----~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~ 214 (269)
.+.+.+.+..++.+ +-|.|.||+=. --+|+. .+. +.+...++.+++.-.+ -|.+.+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~--- 95 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKA--- 95 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHh---
Confidence 45666666666554 55889999763 334543 112 2345566666665333 389999999999999876
Q ss_pred cCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024322 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~ 257 (269)
..+-+|=+ +....+ .++++.++++|..++.+-.-..
T Consensus 96 --g~~iINdi--s~~~~~---~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 96 --GADIINDV--SGGRGD---PEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred --CCCEEEeC--CCCCCC---hHHHHHHHHcCCCEEEECcCCC
Confidence 23333322 222111 2589999999999998865443
No 271
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=37.38 E-value=1.8e+02 Score=29.09 Aligned_cols=66 Identities=15% Similarity=-0.033 Sum_probs=44.7
Q ss_pred HHhCCCccceEEee-cCCCCChhH-HHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEeEEcccCC
Q 024322 156 FRLGLSSVELYQLH-WAGIWGNEG-FIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 156 ~~L~~d~iDll~lH-~p~~~~~~~-~~~~L~~L~~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (269)
..+|.|+|=+++.. .|...+.+. +.+....+. ...|+.|||- |-+++.+.++.+. ..++++|++-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~-~~~v~~VgVfv~~~~~~i~~~~~~-----~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIR-KAGGRPVGVFVNESAKAMLKFSKK-----NGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCC-CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 55899999987554 354455565 333333332 2357889986 6788888888765 57999999753
No 272
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=37.38 E-value=3.5e+02 Score=25.24 Aligned_cols=151 Identities=15% Similarity=0.016 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~-~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
.++..+.+..+++.|++.|=.-- |.... ....+.+ +++++ .+ .++-|..=.. ..++.+.-.+
T Consensus 161 ~~~~~~~a~~~~~~Gf~~~Kikv--g~~~~---~~di~~v-~avRe~~G-----~~~~l~vDaN---~~w~~~~A~~--- 223 (385)
T cd03326 161 LGRLRDEMRRYLDRGYTVVKIKI--GGAPL---DEDLRRI-EAALDVLG-----DGARLAVDAN---GRFDLETAIA--- 223 (385)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC--CCCCH---HHHHHHH-HHHHHhcC-----CCCeEEEECC---CCCCHHHHHH---
Confidence 45666777788899999775311 11000 0001222 33333 22 2332222221 2344443222
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCC
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (269)
.++.|. .+++.++..|-+ .+-++.+.+|+++..|- +.|=|-++...+.++++.-.. .--++++|+...-.-.
T Consensus 224 -~~~~l~--~~~~~~iEeP~~---~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~-~~~~div~~d~~~~GG 296 (385)
T cd03326 224 -YAKALA--PYGLRWYEEPGD---PLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGM-RPDRDVLQFDPGLSYG 296 (385)
T ss_pred -HHHHhh--CcCCCEEECCCC---ccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCc-cccCCEEEeCchhhCC
Confidence 333332 356777776643 23467777787775544 667777788888888764100 0014788887765432
Q ss_pred CcchhhHHHHHHHcCCe
Q 024322 232 KPEENGVKAACDELGIT 248 (269)
Q Consensus 232 ~~~~~~l~~~~~~~gi~ 248 (269)
-.+-..+.+.|+.+|+.
T Consensus 297 it~~~kia~lA~a~gi~ 313 (385)
T cd03326 297 LPEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 22222589999999997
No 273
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=37.17 E-value=4.5e+02 Score=26.54 Aligned_cols=97 Identities=9% Similarity=0.048 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc--CcccEEEecCccHHHHHHHHHHHHhcCCCE
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (269)
.+.+.+++-++....+-....--+|+|+..+... .+...+|.+..++ +.+++|.+++.....+..+...
T Consensus 99 ~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR-------- 169 (647)
T PRK07994 99 TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-------- 169 (647)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-HHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh--------
Confidence 3455666555554433222345688888776433 4678888888888 8899999988654444444332
Q ss_pred eEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024322 220 ASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (269)
|.++.+..+........|...|++.||.
T Consensus 170 -C~~~~f~~Ls~~ei~~~L~~il~~e~i~ 197 (647)
T PRK07994 170 -CLQFHLKALDVEQIRQQLEHILQAEQIP 197 (647)
T ss_pred -heEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4556666665432222234444555543
No 274
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.15 E-value=3.1e+02 Score=24.53 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=42.7
Q ss_pred CcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-----------ChhHHHHHHHHHHHcCcc
Q 024322 127 VEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------GNEGFIDGLGDAVEQGLV 192 (269)
Q Consensus 127 ~~l~I~tK~~~~~---~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~-----------~~~~~~~~L~~L~~~G~i 192 (269)
.++.|..|+.... ...+.+...+- -+.|+.+|+|+|+ +|..... .....++.+..+++.=.+
T Consensus 207 ~d~~i~vris~~~~~~~g~~~~e~~~l-a~~l~~~G~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i 282 (327)
T cd02803 207 PDFPVGVRLSADDFVPGGLTLEEAIEI-AKALEEAGVDALH---VSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKI 282 (327)
T ss_pred CCceEEEEechhccCCCCCCHHHHHHH-HHHHHHcCCCEEE---eCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCC
Confidence 4678888886421 11344443333 3345666765554 3332110 113345556666666556
Q ss_pred cEEEecCc-cHHHHHHHHH
Q 024322 193 KAVGVSNY-SEKRLRNAYE 210 (269)
Q Consensus 193 r~iGvS~~-~~~~i~~~~~ 210 (269)
.-++..++ +.+.++++++
T Consensus 283 PVi~~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 283 PVIAVGGIRDPEVAEEILA 301 (327)
T ss_pred CEEEeCCCCCHHHHHHHHH
Confidence 66777766 4777777755
No 275
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.14 E-value=3.4e+02 Score=25.03 Aligned_cols=92 Identities=8% Similarity=0.090 Sum_probs=60.3
Q ss_pred EEeecCCC------------CChhHHHHHHHHHHHc-Cc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEeEEcccCC
Q 024322 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 166 l~lH~p~~------------~~~~~~~~~L~~L~~~-G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (269)
+.||.|+. ++.+++++++.++.++ |+ ++++=+.++ +.+.++++.+.++..+ ..++-++||
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~--~kVnLIPyN 293 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLD--CKINVIPLN 293 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCC--CcEEEEccC
Confidence 56787764 3468899999877654 32 234445444 6788888888876544 567778888
Q ss_pred ccCC---Ccch---hhHHHHHHHcCCeEEEcccccCcc
Q 024322 228 LIYR---KPEE---NGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 228 ~~~~---~~~~---~~l~~~~~~~gi~via~spl~~G~ 259 (269)
+... .+.. ....+..+++||.+......+.-+
T Consensus 294 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~di 331 (342)
T PRK14465 294 TEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKDI 331 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcCh
Confidence 7431 1111 136677788899999998876543
No 276
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=37.14 E-value=2.1e+02 Score=28.61 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEE
Q 024322 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (269)
Q Consensus 145 ~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~i 195 (269)
+...+.+++.+++||++ .|.+.- --+......+.+.+..|.+.|.|-.-
T Consensus 73 d~~~~~fk~~l~~lgI~-~D~f~r-Tt~~~h~~~v~~~~~~L~~kG~IY~~ 121 (648)
T PRK12267 73 DEISAGFKELWKKLDIS-YDKFIR-TTDERHKKVVQKIFEKLYEQGDIYKG 121 (648)
T ss_pred HHHHHHHHHHHHHcCCC-CCCCee-CCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 45788889999999996 474322 11112245678888999999998743
No 277
>PRK09061 D-glutamate deacylase; Validated
Probab=37.01 E-value=4e+02 Score=25.83 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=6.8
Q ss_pred HHHHHHHcCCeEE
Q 024322 238 VKAACDELGITLI 250 (269)
Q Consensus 238 l~~~~~~~gi~vi 250 (269)
+++.+++.|+.|.
T Consensus 267 ~I~~Ar~~Gi~Vt 279 (509)
T PRK09061 267 LVEKAQAQGLDVT 279 (509)
T ss_pred HHHHHHHcCCcEE
Confidence 4555555555553
No 278
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=36.95 E-value=1.8e+02 Score=23.35 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=45.0
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChhHHHHHHHHHHHc
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~--~d~iDll~lH~p~~--~~~~~~~~~L~~L~~~ 189 (269)
|--+.|+-|++. ....+..+++.+.++++.+. +...|++++-.+.. .+..++.+.|..|.+.
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 566777778743 46778889999999998653 34559999987764 4567777777777665
No 279
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=36.70 E-value=2.3e+02 Score=27.41 Aligned_cols=109 Identities=7% Similarity=0.024 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHHHHHHHcC-cccEEEecCc-c-HHHHHHHHHHHHhcCC
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQG-LVKAVGVSNY-S-EKRLRNAYEKLKKRGI 217 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~L~~~G-~ir~iGvS~~-~-~~~i~~~~~~~~~~~~ 217 (269)
.+++.|.+.++...++.|+.+ +.+..... .+.+.+.+.++.|++.| .-..+++.+- + ...-+++++..++.|.
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 467888888888888887654 33443332 23455667778888887 3334554431 1 1000223333334453
Q ss_pred CEeEEcccC--------CccCCCcc---hhhHHHHHHHcCCeEEEcccc
Q 024322 218 PLASNQVNY--------SLIYRKPE---ENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 218 ~~~~~q~~~--------n~~~~~~~---~~~l~~~~~~~gi~via~spl 255 (269)
. .+++.. ..+..... ..+.++.|+++||.+.+.--+
T Consensus 299 ~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 299 V--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred c--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 2 222211 11211111 115789999999987654444
No 280
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=36.67 E-value=3.3e+02 Score=24.74 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
..+.++..++++.+.+.|+..+.- .| |+.. + ..-+-+.++..... .-.+.|+|-. ...+.+.+
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~---~G-GEPl-l---~~~~~~ii~~~~~~--g~~~~l~TNG----~ll~~e~~--- 98 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHF---SG-GEPL-A---RPDLVELVAHARRL--GLYTNLITSG----VGLTEARL--- 98 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEE---eC-cccc-c---cccHHHHHHHHHHc--CCeEEEEeCC----ccCCHHHH---
Confidence 456788999999999999887753 23 3211 1 11122333322211 1246677765 33444433
Q ss_pred HHHHHHHhCCCccceEEeecCCC----------CChhHHHHHHHHHHHcCccc--EEEecCccHHHHHHHHHHHHhcCCC
Q 024322 151 LKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLVK--AVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH~p~~----------~~~~~~~~~L~~L~~~G~ir--~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (269)
+.|...+++.|. +-|+.++. ...+.+++.++.|++.|.-- .+-++..+.+++.++++.+.+.|++
T Consensus 99 --~~L~~~g~~~v~-iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 99 --DALADAGLDHVQ-LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGAD 175 (358)
T ss_pred --HHHHhCCCCEEE-EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCC
Confidence 234445555433 23343322 11456788888898887421 2344667889999999998888764
No 281
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=36.55 E-value=1.7e+02 Score=21.29 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC-------CChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHH
Q 024322 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (269)
Q Consensus 145 ~~v~~~v~~sL~~L~~d~iDll~lH~p~~-------~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~ 209 (269)
..-.+++++.++++|..-.++|+.-.+.. .+.+.+......+...|-++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 34567788899999999888887754422 335667778888899999998777778888887764
No 282
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=36.52 E-value=3.4e+02 Score=24.87 Aligned_cols=124 Identities=20% Similarity=0.229 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHh----ccCCCCCCcEEEEecCCCCCCCCCHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE----RKQRDPEVEVTVATKFAALPWRLGRQS 146 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~----~~~~~~R~~l~I~tK~~~~~~~~~~~~ 146 (269)
-.+.|+...+++.+.+.|++=+=- =|. |..+-+-|.. .... .-.++-++|-.-
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRl---TGG---------EPllR~dl~eIi~~l~~~-~~~~islTTNG~---------- 98 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRL---TGG---------EPLLRKDLDEIIARLARL-GIRDLSLTTNGV---------- 98 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEE---eCC---------CchhhcCHHHHHHHHhhc-ccceEEEecchh----------
Confidence 456899999999999999986642 233 4444433332 2210 136788887762
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCC---------CChhHHHHHHHHHHHcCcc----cEEEecCccHHHHHHHHHHHH
Q 024322 147 VLAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDll~lH~p~~---------~~~~~~~~~L~~L~~~G~i----r~iGvS~~~~~~i~~~~~~~~ 213 (269)
+......-|+.-|++.|. +.||..++ ...+.+++.+++.+++|.- -.+=+.+.+-++|..+++.+.
T Consensus 99 ~L~~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~ 177 (322)
T COG2896 99 LLARRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAK 177 (322)
T ss_pred hHHHHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHh
Confidence 345556667777766554 34444443 1267899999999999863 366667788899999999888
Q ss_pred hcCCC
Q 024322 214 KRGIP 218 (269)
Q Consensus 214 ~~~~~ 218 (269)
..+..
T Consensus 178 ~~~~~ 182 (322)
T COG2896 178 ERGAQ 182 (322)
T ss_pred hcCCc
Confidence 76654
No 283
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=36.18 E-value=1.7e+02 Score=27.86 Aligned_cols=89 Identities=9% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.++..+.++.+.+.|+..+-..-.||- ...+.+.+++.++
T Consensus 185 ~~~~~~~ai~~l~~~G~~~v~~dli~Gl---------------------------------------Pgqt~e~~~~tl~ 225 (455)
T TIGR00538 185 PEEMIFELMNHAREAGFTSINIDLIYGL---------------------------------------PKQTKESFAKTLE 225 (455)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEeeC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEe----------------ecCCCCChhHHHHHHHHHHHcCcccEEEecCcc
Q 024322 153 DSLFRLGLSSVELYQL----------------HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 153 ~sL~~L~~d~iDll~l----------------H~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (269)
..++ |+.++|.++.+ -.|+.....+.++.+.+..++.--..+++++|.
T Consensus 226 ~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~~fa 289 (455)
T TIGR00538 226 KVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFIGMDHFA 289 (455)
T ss_pred HHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEEecccee
No 284
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=35.97 E-value=77 Score=27.96 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=34.9
Q ss_pred CccceEEeecCCC----CChhHHHHHHHHHHHcCcccEEEecCccHHHHHHH
Q 024322 161 SSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (269)
Q Consensus 161 d~iDll~lH~p~~----~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~ 208 (269)
..-|+++|..|.. ....++++.|.+|+++|+ .|=+.+|+...+...
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 4578889988754 236788999999999975 566778887776665
No 285
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=35.91 E-value=1.9e+02 Score=21.92 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChhHHHHHHHHHHH
Q 024322 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (269)
Q Consensus 126 R~~l~I~tK-~~~~~~~~~~~~v~~~v~~sL~~L~--~d~iDll~lH~p~~--~~~~~~~~~L~~L~~ 188 (269)
|--+.|+-| ++ ....+..+++.+.++++.+. +...|++++-.+.. .+..++.+.|..|.+
T Consensus 46 R~G~~VsKK~~g---~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~ 110 (114)
T PRK01732 46 RLGLTVAKKNVK---RAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWR 110 (114)
T ss_pred EEEEEEEcccCc---chhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 555666676 43 45778888888888888653 34579999988765 456777777777654
No 286
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=35.91 E-value=3.3e+02 Score=25.69 Aligned_cols=113 Identities=8% Similarity=0.037 Sum_probs=63.3
Q ss_pred HHHHHHHHCCCCEEEccc---------ccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 79 AAFDTSLDNGITFFDTAE---------VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 79 ~~l~~Al~~Gvn~~DtA~---------~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
+.++...+.|+|.+.-.- ..+-+.+ .+.+-++++...... -..+-+.-=.+. ...+.+.+++
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~------~~~~~~ai~~l~~~g-~~~i~~dlI~Gl--P~qt~e~~~~ 212 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFHDSELHALHRPQK------RADVHQALEWIRAAG-FPILNIDLIYGI--PGQTHASWME 212 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCC------HHHHHHHHHHHHHcC-CCeEEEEeecCC--CCCCHHHHHH
Confidence 456666677888775332 1233333 344445554433110 012212222332 4678899999
Q ss_pred HHHHHHHHhCCCccceEEeec-CCC------CC-hh---HHH-HHHHHHHHcCcccEEEecCccH
Q 024322 150 ALKDSLFRLGLSSVELYQLHW-AGI------WG-NE---GFI-DGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~-p~~------~~-~~---~~~-~~L~~L~~~G~ir~iGvS~~~~ 202 (269)
.++..+ +|+.++|.++.+.- |.. .+ .+ +.+ .+.+.|.+.|. +.+++++|..
T Consensus 213 ~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 213 SLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred HHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 998887 58999999998753 221 11 11 122 34566777785 5699999864
No 287
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=35.88 E-value=1.8e+02 Score=21.66 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=42.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChhHHHHHHHHH
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDA 186 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~--~d~iDll~lH~p~~--~~~~~~~~~L~~L 186 (269)
|=-+.|+-|++ ....+..+++.+.++++... ....|++++-.+.. .+..++.+.|+.|
T Consensus 42 RlGi~vsKK~g---~AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l 103 (105)
T TIGR00188 42 RVGLSVSKKVK---NAVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQL 103 (105)
T ss_pred EEEEEEecccC---chhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHH
Confidence 56677788875 46778889999988887653 34689999988765 4466777777665
No 288
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=35.85 E-value=2.5e+02 Score=23.10 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.+++.++++.+++.|++.+.....-.+ ..+.+...-+.++ ++.|..= .-.+++.+..+++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~--------~~~~i~~l~~~~~------~~~iGag-----~v~~~~~~~~a~~ 74 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPG--------ALEAIRALRKEFP------EALIGAG-----TVLTPEQADAAIA 74 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChh--------HHHHHHHHHHHCC------CCEEEEE-----eCCCHHHHHHHHH
Confidence 4688999999999999999987654333 2555554444432 3433321 1234554444333
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcc
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~ 224 (269)
+|.|++ |.|.. ..+ .++..++.|.-.-+|++ +.+++.++.+. ..+++++
T Consensus 75 -----~Ga~~i-----~~p~~--~~~---~~~~~~~~~~~~i~gv~--t~~e~~~A~~~------Gad~i~~ 123 (190)
T cd00452 75 -----AGAQFI-----VSPGL--DPE---VVKAANRAGIPLLPGVA--TPTEIMQALEL------GADIVKL 123 (190)
T ss_pred -----cCCCEE-----EcCCC--CHH---HHHHHHHcCCcEECCcC--CHHHHHHHHHC------CCCEEEE
Confidence 676655 65543 223 33334444555567888 45667666542 4556554
No 289
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=35.66 E-value=3.2e+02 Score=24.39 Aligned_cols=113 Identities=13% Similarity=0.002 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHHh---CCCccceEEeecCC---CCChhHHH----HHHHHHHHcCcccE---EEecC-ccHHHHH
Q 024322 141 RLGRQSVLAALKDSLFRL---GLSSVELYQLHWAG---IWGNEGFI----DGLGDAVEQGLVKA---VGVSN-YSEKRLR 206 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L---~~d~iDll~lH~p~---~~~~~~~~----~~L~~L~~~G~ir~---iGvS~-~~~~~i~ 206 (269)
..+++.++......++++ |+-|+|+.+--... ..+.++++ +++.+.+++-.|+. +++.. .+.+.++
T Consensus 64 ~~t~e~l~~~~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~~~~~~~ 143 (324)
T TIGR01430 64 LRTEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHKQPEAAE 143 (324)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHH
Confidence 367788888888887666 88899976332111 12344444 45666655533442 22222 2456666
Q ss_pred HHHHHHHhcCCCEeEEcccCCc--cCCCcc-hhhHHHHHHHcCCeEEEccc
Q 024322 207 NAYEKLKKRGIPLASNQVNYSL--IYRKPE-ENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 207 ~~~~~~~~~~~~~~~~q~~~n~--~~~~~~-~~~l~~~~~~~gi~via~sp 254 (269)
+.++.+...+-. .++.+.+.. .....+ -..+++.|+++|+.+..+.-
T Consensus 144 ~~~~~~~~~~~~-~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~ 193 (324)
T TIGR01430 144 ETLELAKPYKEQ-TIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAG 193 (324)
T ss_pred HHHHHHHhhccC-cEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecC
Confidence 666655432211 122222221 111111 12578899999988887765
No 290
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=35.57 E-value=2.6e+02 Score=25.84 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEee-cCCC------------CChhH----H-HHHHHHHHHcCcccEEEecCcc
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI------------WGNEG----F-IDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH-~p~~------------~~~~~----~-~~~L~~L~~~G~ir~iGvS~~~ 201 (269)
...+.+.+++.++..++ |+.++|.++.+. .|.. .+.++ . ..+.+.|.+.|. .++++|||.
T Consensus 165 Pgqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 165 PTQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred CCCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 45688889998888764 899999999875 3331 11111 1 224466777786 558888885
Q ss_pred H
Q 024322 202 E 202 (269)
Q Consensus 202 ~ 202 (269)
.
T Consensus 243 ~ 243 (370)
T PRK06294 243 K 243 (370)
T ss_pred C
Confidence 3
No 291
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=35.54 E-value=38 Score=28.53 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCC
Q 024322 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (269)
Q Consensus 179 ~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 247 (269)
.++.|+...-+|+|+.+ ++..++.+++.....+..-.+-|+-+++--..-+-+.++..|+++++
T Consensus 4 Fle~Lep~Il~~~i~~l-----pp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~L 67 (196)
T PF12816_consen 4 FLECLEPFILSGKIKSL-----PPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGL 67 (196)
T ss_pred HHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCC
Confidence 56778888888888854 55666666665544432222222223222222222357888888874
No 292
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=35.53 E-value=2.1e+02 Score=25.85 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=42.6
Q ss_pred HHHHHHHcCcccEEEec--Ccc-------------HHHHHHHHHHHHhcCCC-EeEEcccCCccCCCcchhhHHHHHHHc
Q 024322 182 GLGDAVEQGLVKAVGVS--NYS-------------EKRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDEL 245 (269)
Q Consensus 182 ~L~~L~~~G~ir~iGvS--~~~-------------~~~i~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~l~~~~~~~ 245 (269)
.++.|++.|. ..|.|| +.+ .+.+.+.++.+.+.|++ +.++-+-..-.+. .+-.+++++++++
T Consensus 104 ~~~~L~~~gl-~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~-~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 HAKDLKEAGL-KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVND-DEIVDLAEFAKER 181 (334)
T ss_pred HHHHHHHcCC-CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCH-HHHHHHHHHHHhc
Confidence 5677888884 455555 222 24555566666666765 3332211110111 1122689999999
Q ss_pred CCe--EEEcccccCc
Q 024322 246 GIT--LIAYCPIAQG 258 (269)
Q Consensus 246 gi~--via~spl~~G 258 (269)
|+. ++-+.|++.+
T Consensus 182 gv~~~~ie~mp~~~~ 196 (334)
T TIGR02666 182 GVTLRFIELMPLGEG 196 (334)
T ss_pred CCeEEEEeccCCCCC
Confidence 865 5667888766
No 293
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=35.31 E-value=2.5e+02 Score=25.68 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCCCEeEEcc
Q 024322 202 EKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~q~ 224 (269)
...++++.+.+++.+..+.+-..
T Consensus 152 ~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 152 ETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred HHHHHHHHHHHHHcCCEEEEECC
Confidence 46677777777776655444433
No 294
>PRK10060 RNase II stability modulator; Provisional
Probab=35.17 E-value=3.5e+02 Score=27.05 Aligned_cols=115 Identities=18% Similarity=0.268 Sum_probs=73.8
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CChhHHHHHHHHHHHcCcccEEEecCcc--H
Q 024322 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--E 202 (269)
Q Consensus 128 ~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~--~ 202 (269)
++.|+-.+.. .....+.+...+.+.|++.+++ ...+.|--.+. ...+.+.+.+..|++.|- .|.+.+|. .
T Consensus 492 ~~~i~vNls~--~~l~~~~~~~~l~~~l~~~~~~-~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ 566 (663)
T PRK10060 492 NLRVAVNVSA--RQLADQTIFTALKQALQELNFE-YCPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGY 566 (663)
T ss_pred CeEEEEEcCH--HHhCCCcHHHHHHHHHHHHCcC-cceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCch
Confidence 4445555543 2333445777888888888864 34444444433 346678889999999995 56777763 3
Q ss_pred HHHHHHHHHHHhcCCCEeEEcccCCccCC---Ccch----hhHHHHHHHcCCeEEEcc
Q 024322 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYR---KPEE----NGVKAACDELGITLIAYC 253 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~---~~~~----~~l~~~~~~~gi~via~s 253 (269)
..+..+.. ++++.+.+.-+++.. ++.. ..++..|++.|+.++|-+
T Consensus 567 ssl~~L~~------l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG 618 (663)
T PRK10060 567 SSLSQLAR------FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG 618 (663)
T ss_pred hhHHHHHh------CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec
Confidence 45555543 478888877655432 1111 247999999999999864
No 295
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=35.14 E-value=3.1e+02 Score=24.05 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCc-ccEEEecCccHHHHHHHHHHHHhcCCCE
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~-ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (269)
.++.+.-.+ +-+.|.++|++.|++-. |. ...+.++..+.+.+.++ .+-.++...+.+.++.+.+. |++.
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~--~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~----g~~~ 87 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PA--ASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET----GVDG 87 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CC--CCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc----CcCE
Confidence 345554444 44458888988887763 43 23444555555555443 33344555567777777553 3332
Q ss_pred eEEcccCCc------cCCCcch-----hhHHHHHHHcCCeEEEcc
Q 024322 220 ASNQVNYSL------IYRKPEE-----NGVKAACDELGITLIAYC 253 (269)
Q Consensus 220 ~~~q~~~n~------~~~~~~~-----~~l~~~~~~~gi~via~s 253 (269)
.-+-+..|. +....++ .+++++++++|+.+...-
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 211111111 1111111 136688888887765543
No 296
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=35.08 E-value=4e+02 Score=25.45 Aligned_cols=68 Identities=9% Similarity=-0.004 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CC-hhHHHHHHHHHHHcCcccEEEecCcc---HHHHHHHHH
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYE 210 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-~~-~~~~~~~L~~L~~~G~ir~iGvS~~~---~~~i~~~~~ 210 (269)
..+++.+.+.+++..+.+. .++.+-|-.|.. .- .+.+++.|..++++..=..+.+++.. ++.++++.+
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~ 131 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVD 131 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHH
Confidence 4678888888888776652 356677776543 22 35678888888888211256766542 566666654
No 297
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=35.06 E-value=3.7e+02 Score=24.85 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=40.4
Q ss_pred EEEecCCCCC------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHH
Q 024322 130 TVATKFAALP------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 130 ~I~tK~~~~~------~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 203 (269)
+|..|+.+.. ...+.+.....+-+-|+..|+|+|++-.-++....+.. ...-+.+++.=.+.-+++..++++
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~--~~~~~~ik~~~~~pv~~~G~~~~~ 304 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYS--DAFREKVRARFHGVIIGAGAYTAE 304 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCcccc--HHHHHHHHHHCCCCEEEeCCCCHH
Confidence 5888987531 12444442234445567778888887543222111111 111233333322334455567888
Q ss_pred HHHHHHHH
Q 024322 204 RLRNAYEK 211 (269)
Q Consensus 204 ~i~~~~~~ 211 (269)
.++++++.
T Consensus 305 ~ae~~i~~ 312 (362)
T PRK10605 305 KAETLIGK 312 (362)
T ss_pred HHHHHHHc
Confidence 88877654
No 298
>PRK11059 regulatory protein CsrD; Provisional
Probab=35.01 E-value=2e+02 Score=28.52 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHHh-CCCccceEEeecCCC---CChhHHHHHHHHHHHcCcccEEEecCcc--HHHHHHHHHHHHhc
Q 024322 142 LGRQSVLAALKDSLFRL-GLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKR 215 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L-~~d~iDll~lH~p~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~--~~~i~~~~~~~~~~ 215 (269)
..-..+.+.+...|... +.. -+-+.+--++. ...+.+...+..|++.|- .|++.+|. ...+..+.+
T Consensus 495 l~~~~f~~~l~~~l~~~~~~~-~~~l~~Ei~E~~~~~~~~~~~~~l~~L~~~G~--~iaiddfG~g~~s~~~L~~----- 566 (640)
T PRK11059 495 LLSRAFQRWLRDTLLQCPRSQ-RKRLIFELAEADVCQHISRLRPVLRMLRGLGC--RLAVDQAGLTVVSTSYIKE----- 566 (640)
T ss_pred hCChhHHHHHHHHHHhcCCCC-cceEEEEEechhhhcCHHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHHh-----
Confidence 33344666677777766 443 46666666554 346788899999999996 45555552 223333322
Q ss_pred CCCEeEEcccCCccCC---Ccch----hhHHHHHHHcCCeEEEccc
Q 024322 216 GIPLASNQVNYSLIYR---KPEE----NGVKAACDELGITLIAYCP 254 (269)
Q Consensus 216 ~~~~~~~q~~~n~~~~---~~~~----~~l~~~~~~~gi~via~sp 254 (269)
++|+++-+.-+++.. +.+. ..+++.|+..|+.|||-+.
T Consensus 567 -l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAegV 611 (640)
T PRK11059 567 -LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATGV 611 (640)
T ss_pred -CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEEe
Confidence 478888877665432 2211 2489999999999998653
No 299
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.00 E-value=26 Score=37.22 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHcCcccEE-EecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 176 NEGFIDGLGDAVEQGLVKAV-GVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~i-GvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
..+++++|.++++.|+|.-| |==+ +...|..-++.| +.-.+-++.|.+.+........+.||++++++..++-+
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLG-DLg~Id~kYDvA----IsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~ 673 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLG-DLGAIDEKYDVA----ISTACARLDYIVVDTIETAQECINFLKKNNLGRATFII 673 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccc-cccccchHHHHH----HHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEe
Confidence 45789999999999988732 2111 111222222221 11234455666666544444699999999999999988
Q ss_pred cc
Q 024322 255 IA 256 (269)
Q Consensus 255 l~ 256 (269)
|.
T Consensus 674 LD 675 (1293)
T KOG0996|consen 674 LD 675 (1293)
T ss_pred hH
Confidence 85
No 300
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.99 E-value=2e+02 Score=27.57 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceE---EeecCCCCChhHHHHHHHHHHHc-CcccE---------EEecCccHHHHHHHHHHHHh
Q 024322 148 LAALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQ-GLVKA---------VGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll---~lH~p~~~~~~~~~~~L~~L~~~-G~ir~---------iGvS~~~~~~i~~~~~~~~~ 214 (269)
+-.+-+.|.++|++.|++. -++.--..-.++-|+.|+.+++. ..++. +|.+++.-+.+++.++.+..
T Consensus 28 kl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~ 107 (448)
T PRK12331 28 MLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVE 107 (448)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHH
Q ss_pred cCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
.|+...-+-...|-...-.+ .+++++++|+.+.+
T Consensus 108 ~Gvd~irif~~lnd~~n~~~---~v~~ak~~G~~v~~ 141 (448)
T PRK12331 108 NGIDIIRIFDALNDVRNLET---AVKATKKAGGHAQV 141 (448)
T ss_pred CCCCEEEEEEecCcHHHHHH---HHHHHHHcCCeEEE
No 301
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=34.93 E-value=1.8e+02 Score=22.75 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChhHHHHHHHHHHH
Q 024322 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (269)
Q Consensus 126 R~~l~I~tK-~~~~~~~~~~~~v~~~v~~sL~~L~--~d~iDll~lH~p~~--~~~~~~~~~L~~L~~ 188 (269)
|=-+.|+-| ++ ....+..+++.+.++.+... +.-.|++++..+.. .+..++.+.|..|.+
T Consensus 47 RiG~~VsKK~~g---~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~ 111 (130)
T PRK00396 47 RLGLVIGKKSVK---LAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWK 111 (130)
T ss_pred cEEEEEecccCc---cHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 555666667 44 46778889999999987653 34689999998765 445666666665543
No 302
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=34.93 E-value=3.2e+02 Score=24.08 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=71.3
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEecCCC----------
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE--TLLGRFIKERKQRDPEVEVTVATKFAA---------- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se--~~lG~al~~~~~~~~R~~l~I~tK~~~---------- 137 (269)
+.+|.+...+.++..++.|++-+=..-..|-+.+ +...| +++-.+.+.... |-.+++.+-...
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~--Ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~ 88 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPT--LSHEEHKKVIEFVVDLVNG---RVPVIAGTGSNATEEAISLTKF 88 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCccccc--CCHHHHHHHHHHHHHHhCC---CCeEEEeCCCccHHHHHHHHHH
Confidence 4577888999999999999985544333332111 11112 333333333321 334554433211
Q ss_pred ------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHH
Q 024322 138 ------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 138 ------------~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 203 (269)
.| ...+.+.+.+-+++..+..+ +++++.+.|......=..+.+++|.+...|..|=-|+.+..
T Consensus 89 a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~---~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~ 165 (285)
T TIGR00674 89 AEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVD---LPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLE 165 (285)
T ss_pred HHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCC---CCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHH
Confidence 11 22456777777777777643 67787788764333323555666665554433333555666
Q ss_pred HHHHHHH
Q 024322 204 RLRNAYE 210 (269)
Q Consensus 204 ~i~~~~~ 210 (269)
.+.++..
T Consensus 166 ~~~~l~~ 172 (285)
T TIGR00674 166 RISEIKA 172 (285)
T ss_pred HHHHHHH
Confidence 6666644
No 303
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.72 E-value=3e+02 Score=25.57 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=54.7
Q ss_pred ChhHHHHHHHH-HHHcC---cccEEEecC--ccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcch-------hhHHHH
Q 024322 175 GNEGFIDGLGD-AVEQG---LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAA 241 (269)
Q Consensus 175 ~~~~~~~~L~~-L~~~G---~ir~iGvS~--~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~l~~~ 241 (269)
+.+++++++.+ +++.| +|+++=+.+ .+.+.++++.+.++.. ...++-++||++...+.. ..+.+.
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~--~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~ 337 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF--FCKINLIDYNSIVNIKFEPVCSSTRERFRDR 337 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC--CCeeEEeeeccCCCCCCCCCCHHHHHHHHHH
Confidence 35788888875 45556 244444444 4667788888877543 457777899987654332 146777
Q ss_pred HHHcCCeEEEcccccC
Q 024322 242 CDELGITLIAYCPIAQ 257 (269)
Q Consensus 242 ~~~~gi~via~spl~~ 257 (269)
.+++|+.+......+.
T Consensus 338 L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 338 LLDAGLQVTVRKSYGT 353 (368)
T ss_pred HHHCCCcEEeeCCCCc
Confidence 8899999999888754
No 304
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=34.57 E-value=97 Score=29.04 Aligned_cols=52 Identities=12% Similarity=0.234 Sum_probs=31.4
Q ss_pred CccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchh----hHHHHHHHcCCeEE
Q 024322 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN----GVKAACDELGITLI 250 (269)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~----~l~~~~~~~gi~vi 250 (269)
|++.+.++++++..-.++++..+.-+..|....++... ++.++|++++|+++
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv 223 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVV 223 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEE
Confidence 45566666665544444466666666666665554431 46777777777765
No 305
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=34.56 E-value=2.2e+02 Score=28.77 Aligned_cols=99 Identities=14% Similarity=-0.009 Sum_probs=53.6
Q ss_pred EEEcccccCCCCCCCCC-chHHHHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCCH----HHHHHHHHHHHH
Q 024322 91 FFDTAEVYGSRASFGAI-NSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAALKDSLF 156 (269)
Q Consensus 91 ~~DtA~~Yg~g~~~~~~-~se~~lG~al~~~~~~~~R~~l~I~tK~~~~---------~~~~~~----~~v~~~v~~sL~ 156 (269)
++.|+..|.||.. |.+ ....++.+.+.++-+.. -.+++..+=.-.+ ....++ +...+.+.+.++
T Consensus 5 ~itt~~py~ng~~-HiGH~~~~l~aDv~aR~~r~~-G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 5 LVTCALPYANGPI-HLGHLVEYIQADIWVRYQRMR-GHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred EEeCCCCCCCCcc-cccchHHHHHHHHHHHHHHhc-CCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6778887877643 222 22234444444332110 1345444433110 012233 356778889999
Q ss_pred HhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc
Q 024322 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 157 ~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir 193 (269)
+||++ .|.+.-. -++.-.+.+.+.+.+|.++|.|-
T Consensus 83 ~l~i~-~d~f~rt-t~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 83 GFGIS-FDNYGST-HSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred HhCCC-CCCCccC-CcHHHHHHHHHHHHHHHHCCCEE
Confidence 99997 4743211 11122567888899999999874
No 306
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=34.51 E-value=2.8e+02 Score=23.37 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 024322 146 SVLAALKDSLFRL 158 (269)
Q Consensus 146 ~v~~~v~~sL~~L 158 (269)
.+.+.+++.++++
T Consensus 16 ~~~~~i~~~~~~~ 28 (272)
T cd06300 16 QMLDEFKAQAKEL 28 (272)
T ss_pred HHHHHHHHHHHhh
Confidence 3444455555544
No 307
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.48 E-value=64 Score=23.69 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=23.4
Q ss_pred hHHHHHHHcCCeEEEcccccCcccccc
Q 024322 237 GVKAACDELGITLIAYCPIAQGELLLF 263 (269)
Q Consensus 237 ~l~~~~~~~gi~via~spl~~G~L~~~ 263 (269)
++-+.+.+.|+++....|...|.+.|+
T Consensus 66 ~i~~~~~~~~ipv~~I~~~~Y~~mdg~ 92 (95)
T TIGR00853 66 DLKKETDKKGIPVEVINGAQYGKLTGA 92 (95)
T ss_pred HHHHHhhhcCCCEEEeChhhcccCCcc
Confidence 477788899999999999999988864
No 308
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=34.45 E-value=3.6e+02 Score=24.62 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=36.3
Q ss_pred HHHHHHhCCCccceEEeecCCC--------CChhHHHHHHHHHHHcCc--cc---EEEecCccHHHHHHHHHHHHhcC
Q 024322 152 KDSLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGL--VK---AVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~--------~~~~~~~~~L~~L~~~G~--ir---~iGvS~~~~~~i~~~~~~~~~~~ 216 (269)
=+.|+++|+++|.+=+=...+. .+.++++++++.+++.|. |. -+|+.+.+.+.+.+.++.+.+.+
T Consensus 103 l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~ 180 (360)
T TIGR00539 103 CKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELP 180 (360)
T ss_pred HHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccC
Confidence 3456666665554332211111 235677778888887774 32 24555667777777666655444
No 309
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=34.41 E-value=1.3e+02 Score=25.11 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=26.3
Q ss_pred ChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 175 ~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
...++.+.|+.|+++|.--.| +||.....++..++.
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 357888999999999865555 777676777766553
No 310
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=34.22 E-value=2.9e+02 Score=23.43 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEeEEcccCC
Q 024322 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 149 ~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (269)
+.++...+.||+.+. .+-+.+......+....+|.+++++| +..|-.... +..+-...-..+...++++. .
T Consensus 46 ~~~~~~A~~lgip~~-~i~~~~~~~~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~------~ 117 (218)
T TIGR03679 46 ELTRLQAEALGIPLV-KIETSGEKEKEVEDLKGALKELKREG-VEGIVTGAIASRYQKSRIERICEELGLKVF------A 117 (218)
T ss_pred HHHHHHHHHhCCCEE-EEECCCCChHHHHHHHHHHHHHHHcC-CCEEEECCcccHhHHHHHHHHHHhCCCeEE------e
Confidence 455666788887532 22222211122445778888888884 666655443 33333334344555554433 3
Q ss_pred ccCCCcchhhHHHHHHHcCCeEEEcccccCc
Q 024322 228 LIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~via~spl~~G 258 (269)
|+.....+ ++++.+.+.|+..+--+.-+.|
T Consensus 118 PLw~~~~~-el~~~~~~~G~~~~i~~v~~~~ 147 (218)
T TIGR03679 118 PLWGRDQE-EYLRELVERGFRFIIVSVSAYG 147 (218)
T ss_pred ehhcCCHH-HHHHHHHHCCCEEEEEEEecCC
Confidence 55554444 5999999999888776665554
No 311
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=34.19 E-value=1.9e+02 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHHhcCC
Q 024322 201 SEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~ 217 (269)
+.+.+..+++.++..|.
T Consensus 116 ~~~~~~~~i~~ak~~G~ 132 (275)
T cd07937 116 DVRNLEVAIKAVKKAGK 132 (275)
T ss_pred hHHHHHHHHHHHHHCCC
Confidence 44555556565555553
No 312
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=34.07 E-value=34 Score=26.90 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.0
Q ss_pred hHHHHHHHcCCeEEEccccc
Q 024322 237 GVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 237 ~l~~~~~~~gi~via~spl~ 256 (269)
++++.|++.||.+++|-.+.
T Consensus 48 e~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHCCCEEEEEEeee
Confidence 69999999999999997764
No 313
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.04 E-value=2.6e+02 Score=26.17 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.+++.+.++.+.+.|+..+-.-=.||- ...+.+.+++.++
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~Gl---------------------------------------Pgqt~e~~~~tl~ 189 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGL---------------------------------------PHQTLEDWQASLE 189 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEee-----------------cCCCCChhHHHHHHHHHHHcCcccEEEecCc
Q 024322 153 DSLFRLGLSSVELYQLH-----------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH-----------------~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~ 200 (269)
..++ |+.++|-++.+. .|+.....+.++...+.-++.--.++++|||
T Consensus 190 ~~~~-l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnf 253 (400)
T PRK07379 190 AAIA-LNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYEISNY 253 (400)
T ss_pred HHHc-CCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCceeeeehe
No 314
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=33.95 E-value=3.4e+02 Score=28.59 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=63.2
Q ss_pred cccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC
Q 024322 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (269)
Q Consensus 94 tA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~ 173 (269)
..-.||. ++.|-++|++...+++.+-++|.|=+. ...--+.+...+++.-++++ +.++.++.|+.
T Consensus 90 ~diVfGG---------~~kL~~aI~~~~~~~~P~~I~V~tTC~---~elIGDDi~~v~~~~~~~~~---~pvi~v~tpGF 154 (917)
T PRK14477 90 NDVIFGG---------EKKLYRAILELAERYQPKAVFVYATCV---TALTGDDVEAVCKAAAEKVG---IPVIPVNTPGF 154 (917)
T ss_pred CceeeCc---------HHHHHHHHHHHHHhcCCCEEEEECCch---HHHhccCHHHHHHHHHHhhC---CcEEEEECCCc
Confidence 3456886 888889998776554355677776663 23333445555555444443 57889999877
Q ss_pred CC-----hhHHHHH-HHHHHH--------cCcccEEEecCccHHHHHHHHHHHHhcCCCE
Q 024322 174 WG-----NEGFIDG-LGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 174 ~~-----~~~~~~~-L~~L~~--------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (269)
.. .+...++ ++.+.. .+.|--||-.++. ..+.++....+..|+++
T Consensus 155 ~gs~~~G~~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~~-gd~~elk~lL~~~Gi~v 213 (917)
T PRK14477 155 IGDKNIGNRLAGEALLKHVIGTAEPEVTTPYDINLIGEYNIA-GDLWGMLPLFDRLGIRV 213 (917)
T ss_pred cCchhhHHHHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCCc-chHHHHHHHHHHcCCeE
Confidence 32 2222333 234432 3567788866653 23444444455667664
No 315
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=33.94 E-value=1.7e+02 Score=28.14 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC-cccEEEecCc-cHHHHHHHHHHHHhcCCC--E
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNY-SEKRLRNAYEKLKKRGIP--L 219 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G-~ir~iGvS~~-~~~~i~~~~~~~~~~~~~--~ 219 (269)
++...-+++++.+-||+..--+.+.......+.+.+.+.+++....| .|-..|...+ +.+.|+++.+.+++.++. +
T Consensus 163 s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHV 242 (460)
T COG0076 163 SETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHV 242 (460)
T ss_pred cCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEE
Confidence 34468889999999998754444443322245667777777766666 5556666666 448888888888888854 4
Q ss_pred eEEcccCCc
Q 024322 220 ASNQVNYSL 228 (269)
Q Consensus 220 ~~~q~~~n~ 228 (269)
|..---+.+
T Consensus 243 DAA~GG~~~ 251 (460)
T COG0076 243 DAAFGGFLL 251 (460)
T ss_pred Eccccceee
Confidence 554444444
No 316
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=33.77 E-value=3.2e+02 Score=23.83 Aligned_cols=122 Identities=16% Similarity=0.014 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCC--CCCcEEEEecCCCCCC---CCCHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD--PEVEVTVATKFAALPW---RLGRQSVLA 149 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~--~R~~l~I~tK~~~~~~---~~~~~~v~~ 149 (269)
+++.+.+-.+++.|-+.| .+|.|.| -.+--.-..+.+.+. +++.+....-.+.... ....+.-..
T Consensus 36 ~~av~~~~~~l~~ggrl~----~~GaGtS------g~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~ 105 (257)
T cd05007 36 ARAVDAAAERLRAGGRLI----YVGAGTS------GRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEE 105 (257)
T ss_pred HHHHHHHHHHHHcCCEEE----EEcCcHH------HHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHH
Confidence 556666777788898877 4677765 332211112222111 1333322222221000 001111122
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHH
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~ 208 (269)
.-.+.+...+...=|+++.-... -...+++++++.+++.| ++-|++++.....+.+.
T Consensus 106 ~~~~~l~a~~l~~~DvvI~IS~S-G~T~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~ 162 (257)
T cd05007 106 AGAADLQAINLTERDVVIGIAAS-GRTPYVLGALRYARARG-ALTIGIACNPGSPLLQL 162 (257)
T ss_pred HHHHHHHHcCCCCCCEEEEEeCC-CCCHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 23344555666678888776543 23567999999999998 78999998866666554
No 317
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=33.58 E-value=3.4e+02 Score=25.15 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHH-HHHHHcCcccEEEecCccHHHHHHHHHHHHhcCC--
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGL-GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-- 217 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L-~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~-- 217 (269)
..+++.+++-+++.|++.|++ ++.-+++ +.|+.. -..|+.+|..-++...++..+.-++
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~---------------ee~A~~vA~~lv~a---d~~G~~SHGv~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVP---------------EEDARAVADVLVAA---DLRGVDSHGVGRLPGYVRRLKAGKINP 66 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHH---HhcCCcccchHHHHHHHHHHHcCCcCC
Confidence 467899999999999999985 2222222 222222 2357888888888888776655443
Q ss_pred --CEeEEcccCCccCCCcc-----------hhhHHHHHHHcCCeEEEc
Q 024322 218 --PLASNQVNYSLIYRKPE-----------ENGVKAACDELGITLIAY 252 (269)
Q Consensus 218 --~~~~~q~~~n~~~~~~~-----------~~~l~~~~~~~gi~via~ 252 (269)
.|.+++.-=....-+.. ...+++.|+++||++++-
T Consensus 67 ~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 67 DAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred CCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 24444332221111111 014799999999999874
No 318
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.56 E-value=1.6e+02 Score=24.40 Aligned_cols=57 Identities=28% Similarity=0.306 Sum_probs=42.9
Q ss_pred HHHHhCCC----ccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 154 SLFRLGLS----SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 154 sL~~L~~d----~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
.|++.|+. -+|-=++-|.++...+++.+.++++++.|. +-+=+||.+..++..+.+.
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~ 82 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEK 82 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhh
Confidence 45555543 156667777777778999999999999984 5666899899998888553
No 319
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.56 E-value=3.8e+02 Score=25.28 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=60.4
Q ss_pred cccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC
Q 024322 96 EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG 175 (269)
Q Consensus 96 ~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~ 175 (269)
-.||. ++.+-+++++..++.+.+=++|.|=+. ...--+.++..+++.-++.....+.++.++.|+...
T Consensus 64 vVfGg---------~~kL~~aI~~~~~~~~P~~I~V~ttc~---~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g 131 (429)
T cd03466 64 TVYGG---------EKNLKKGLKNVIEQYNPEVIGIATTCL---SETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGG 131 (429)
T ss_pred eEECc---------HHHHHHHHHHHHHhcCCCEEEEeCCch---HHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcc
Confidence 35787 889999998776554344556665553 223333344444443333111246788888887732
Q ss_pred -----hhHHHHHHH-HHHH----cCcccEEEecCccHHHHHHHHHHHHhcCCCE
Q 024322 176 -----NEGFIDGLG-DAVE----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 176 -----~~~~~~~L~-~L~~----~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (269)
.+.++++|. ++.+ .++|--||-.+ ++..++++.+..+..|+++
T Consensus 132 ~~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~-~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 132 THVEGYDTAVRSIVKNIAVDPDKIEKINVIAGMM-SPADIREIKEILREFGIEY 184 (429)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCC-ChhHHHHHHHHHHHcCCCe
Confidence 233343432 2222 35577776443 3445555555566667765
No 320
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=33.30 E-value=3.3e+02 Score=25.06 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCCEeEEcc
Q 024322 204 RLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~q~ 224 (269)
.++++.+.+++.++.+.+--.
T Consensus 149 dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 149 DIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred cHHHHHHHHHHcCCEEEEECC
Confidence 466666667766655444433
No 321
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=33.19 E-value=2.5e+02 Score=22.43 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=28.7
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcC
Q 024322 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (269)
Q Consensus 128 ~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G 190 (269)
-+++.+|+. ..+.....+..+...+.++....+++.+-.-+....+++++.|.++.++|
T Consensus 138 ~iiv~nK~D----l~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (196)
T PRK00454 138 VLIVLTKAD----KLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAEA 196 (196)
T ss_pred EEEEEECcc----cCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 467778873 33333333333333333332223444333333345667777777766654
No 322
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.08 E-value=4.1e+02 Score=24.79 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=56.2
Q ss_pred EeecCCC------------CChhHHHHHHHHHHH-cC------cccEEEecCc--cHHHHHHHHHHHHhcCCCEeEEccc
Q 024322 167 QLHWAGI------------WGNEGFIDGLGDAVE-QG------LVKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 167 ~lH~p~~------------~~~~~~~~~L~~L~~-~G------~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (269)
.||.++. ++.++.++++.+..+ .| .|+++=+.++ +.+.++++.+.++.. +..++-++
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l--~~~VnLIP 298 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDT--PCKINLIP 298 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcC--CceEEEec
Confidence 3898765 124566666554443 32 2555556654 778888888876543 46888899
Q ss_pred CCccCCC----cchh---hHHHHHHHcCCeEEEcccccC
Q 024322 226 YSLIYRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 226 ~n~~~~~----~~~~---~l~~~~~~~gi~via~spl~~ 257 (269)
||++... +... .+.+..+++|+.+......+.
T Consensus 299 YN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 337 (372)
T PRK11194 299 WNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGD 337 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 9986532 2211 356677888999988655543
No 323
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=32.98 E-value=28 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.4
Q ss_pred cceeecCCCCcccccceecccc
Q 024322 36 EDKVKLGGSDLKVTKLGVGAWS 57 (269)
Q Consensus 36 m~~~~Lg~tg~~v~~lglG~~~ 57 (269)
...+.|+++|+.||.+-+|+..
T Consensus 15 s~~~~l~dtglrvpv~KmGtgw 36 (61)
T PF15221_consen 15 SLGRALRDTGLRVPVIKMGTGW 36 (61)
T ss_pred cccccccccccCCceeeecchH
Confidence 4577899999999999999873
No 324
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.87 E-value=3.2e+02 Score=23.48 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCC-ccceEEeecCCCCChhHHHHHHHHHHHcCc-ccEEEec---------------------CccHHHH
Q 024322 149 AALKDSLFRLGLS-SVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVS---------------------NYSEKRL 205 (269)
Q Consensus 149 ~~v~~sL~~L~~d-~iDll~lH~p~~~~~~~~~~~L~~L~~~G~-ir~iGvS---------------------~~~~~~i 205 (269)
.++.+.+.+++-+ ..-|+-+--....+..++...|.-|..-|. |-.+|+- +.+.+.+
T Consensus 3 eql~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i 82 (268)
T KOG4175|consen 3 EQLSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSI 82 (268)
T ss_pred hHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHH
Q ss_pred HHHHHHHHhcCCC-EeEEcccCCccCCCcch------------------------hhHHHHHHHcCCeEEE
Q 024322 206 RNAYEKLKKRGIP-LASNQVNYSLIYRKPEE------------------------NGVKAACDELGITLIA 251 (269)
Q Consensus 206 ~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~------------------------~~l~~~~~~~gi~via 251 (269)
-++...++..|+. |.+.+.-||++.+.-++ ..+.++|+++||.++.
T Consensus 83 ~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvp 153 (268)
T KOG4175|consen 83 IEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVP 153 (268)
T ss_pred HHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEE
No 325
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=32.87 E-value=2.6e+02 Score=25.46 Aligned_cols=71 Identities=7% Similarity=0.027 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCcc-cEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCc
Q 024322 180 IDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 180 ~~~L~~L~~~G~i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G 258 (269)
++.|.+|+++-.| -+.|=|-++...+.++++. ...+++|+..+.+-.-. ++++.|+++||.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-----~a~dvi~ik~~~~GGit---~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARA-----GAADVAVLKVAPLGGVR---AALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEEeCcchhCCHH---HHHHHHHHcCCcEEEeCCcccH
Confidence 4555555554222 2444444555655555442 24677777666543321 4788999999999988776555
No 326
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=32.65 E-value=3.7e+02 Score=24.84 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHH---HHHHHHhccCCCCCCcEEEEecCCCC---CCCCCHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL---LGRFIKERKQRDPEVEVTVATKFAAL---PWRLGRQS 146 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~---lG~al~~~~~~~~R~~l~I~tK~~~~---~~~~~~~~ 146 (269)
+.+...+.|+.+.+.|+..+-|+-.++++.. +.. +-+.++... +..+.+..-+.+. +-+.+.+.
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~------~~~~~~~~ell~~An----klg~~vivDvnPsil~~l~~S~~~ 83 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPEEDA------ELYFHRFKELLKEAN----KLGLRVIVDVNPSILKELNISLDN 83 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccCCchH------HHHHHHHHHHHHHHH----hcCcEEEEEcCHHHHhhcCCChHH
Confidence 4477788999999999999999999998643 322 223333333 2344444333220 01112221
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcc-c
Q 024322 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV-N 225 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~-~ 225 (269)
+ ..+..+|++-|- .+..-.-++..++-+++.--.+-.|+-+. .+..+++. .....++ -
T Consensus 84 l-----~~f~e~G~~glR---------lD~gfS~eei~~ms~~~lkieLN~S~it~-~l~~l~~~------~an~~nl~~ 142 (360)
T COG3589 84 L-----SRFQELGVDGLR---------LDYGFSGEEIAEMSKNPLKIELNASTITE-LLDSLLAY------KANLENLEG 142 (360)
T ss_pred H-----HHHHHhhhhhee---------ecccCCHHHHHHHhcCCeEEEEchhhhHH-HHHHHHHh------ccchhhhhh
Confidence 1 223333332110 11111233445555565433455555443 55555443 2333333 3
Q ss_pred CCccCCCcchh-------hHHHHHHHcCCeEEEcccccCc
Q 024322 226 YSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 226 ~n~~~~~~~~~-------~l~~~~~~~gi~via~spl~~G 258 (269)
+|-+.+.++.. .-=++.+++++.+.|+.+-.+.
T Consensus 143 cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~t~AFis~~~~ 182 (360)
T COG3589 143 CHNYYPRPYTGLSREHFKRKNEIFKEYNIKTAAFISSDGA 182 (360)
T ss_pred cccccCCcccCccHHHHHHHHHHHHhcCCceEEEEecCCc
Confidence 45555544431 2356778889999988776544
No 327
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=32.62 E-value=1.4e+02 Score=26.68 Aligned_cols=54 Identities=15% Similarity=0.376 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHHHhcCCCEeEEcccCCccCC--------C----cchhhHHHHHHHcCCeEEEcc
Q 024322 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR--------K----PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~--------~----~~~~~l~~~~~~~gi~via~s 253 (269)
.+.+.++++++..++.++|++++++...-... + ++..++++..+++|+.++.+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~ 86 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWI 86 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEe
Confidence 46677888888788888888887665322211 1 112368999999999998863
No 328
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=32.43 E-value=4.7e+02 Score=25.29 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~ 150 (269)
+.+++-.+..++.|.+.|+..|=..+.-.+ +.+.+..+ ++.++.+.. -.+.|+--.. ..++.+++.+.
T Consensus 101 ~ypddvv~~fv~~a~~~Gidi~Rifd~lnd-----~~n~~~ai-~~ak~~G~~---~~~~i~yt~s---p~~t~~y~~~~ 168 (468)
T PRK12581 101 HYADDIVDKFISLSAQNGIDVFRIFDALND-----PRNIQQAL-RAVKKTGKE---AQLCIAYTTS---PVHTLNYYLSL 168 (468)
T ss_pred CCcchHHHHHHHHHHHCCCCEEEEcccCCC-----HHHHHHHH-HHHHHcCCE---EEEEEEEEeC---CcCcHHHHHHH
Confidence 345577778899999999987766655444 11223333 233443321 2344444443 35677778887
Q ss_pred HHHHHHHhCCCccceEEeecC-CCCChhHHHHHHHHHHHcCcccEEEecCccHHHHH--HHHHHHHhcCCC-EeEEcccC
Q 024322 151 LKDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR--NAYEKLKKRGIP-LASNQVNY 226 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH~p-~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~--~~~~~~~~~~~~-~~~~q~~~ 226 (269)
+++. ..+|. |.+.|-+. ....+.++.+.+..+++... .-||+=.|+..-+- ..+. +-+.|.. +++.-..+
T Consensus 169 a~~l-~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~GlA~An~la-AieAGad~vD~ai~g~ 242 (468)
T PRK12581 169 VKEL-VEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHATSGISQMTYLA-AVEAGADRIDTALSPF 242 (468)
T ss_pred HHHH-HHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCCCCccHHHHHHH-HHHcCCCEEEeecccc
Confidence 7764 46775 45555432 22456777777777777554 35888877542221 1111 1233432 44444444
Q ss_pred CccCCCcchhhHHHHHHHcCC
Q 024322 227 SLIYRKPEENGVKAACDELGI 247 (269)
Q Consensus 227 n~~~~~~~~~~l~~~~~~~gi 247 (269)
..-..++..+.++..++..|.
T Consensus 243 g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 243 SEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred CCCcCChhHHHHHHHHHhcCC
Confidence 333333333346666665543
No 329
>PTZ00124 adenosine deaminase; Provisional
Probab=32.28 E-value=4.1e+02 Score=24.60 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHHh---CCCccceEEeecCC------CCChhHHHHHHHH----HHHc---C-cccEEE--ecCccH
Q 024322 142 LGRQSVLAALKDSLFRL---GLSSVELYQLHWAG------IWGNEGFIDGLGD----AVEQ---G-LVKAVG--VSNYSE 202 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L---~~d~iDll~lH~p~------~~~~~~~~~~L~~----L~~~---G-~ir~iG--vS~~~~ 202 (269)
.+++.+++...+.++++ |+-|+.+.+ .|. ..+.+++++++.+ .+++ | .++-|- .-.++.
T Consensus 99 ~t~~dl~r~a~e~~~d~~~dgV~Y~Eir~--~P~~~~~~~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~~~ 176 (362)
T PTZ00124 99 NDYEVIEDLAKHAVFNKYKEGVVLMEFRY--SPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGHDA 176 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEc--CchhhhcCCCCCHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCCCH
Confidence 45666777777776655 666777665 331 1334555555544 3331 2 222221 123456
Q ss_pred HHHHHHHHHHHhcCCC---EeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 203 KRLRNAYEKLKKRGIP---LASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~~---~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
+...+.++.+...... ++..-.+.. .... .++++.|++.|+.+.++.-
T Consensus 177 e~a~e~~~~a~~~~~~vvGiDLaG~E~~---~~~f-~~~f~~Ar~~Gl~~t~HaG 227 (362)
T PTZ00124 177 APIKESADFCLKHKADFVGFDHAGHEVD---LKPF-KDIFDYVREAGVNLTVHAG 227 (362)
T ss_pred HHHHHHHHHHHhccCCeEEEeccCCCCC---cHHH-HHHHHHHHHCCCCEEEEeC
Confidence 6666666655442211 222111211 1111 2578888888888877764
No 330
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=32.16 E-value=2.3e+02 Score=21.69 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=43.8
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC----C--ccceEEeecCCC--CChhHHHHHHHHHH
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----S--SVELYQLHWAGI--WGNEGFIDGLGDAV 187 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~----d--~iDll~lH~p~~--~~~~~~~~~L~~L~ 187 (269)
|--+.|+-|++. ....+..+++.+.++++.... . -.|++++-.+.. .+..+..+.|+.|.
T Consensus 47 RlG~sVSKKv~~--kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNK--KAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCC--chhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 567888888653 467788999999999988754 2 579999998765 34556666665553
No 331
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=32.10 E-value=3.6e+02 Score=23.82 Aligned_cols=134 Identities=11% Similarity=0.086 Sum_probs=73.7
Q ss_pred chhhHHHHHHHHHHHHHC-CCCEEEcccccCCCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEecCCC---------
Q 024322 70 DDRKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSE--TLLGRFIKERKQRDPEVEVTVATKFAA--------- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~-Gvn~~DtA~~Yg~g~~~~~~~se--~~lG~al~~~~~~~~R~~l~I~tK~~~--------- 137 (269)
+.+|.+...+.++..++. |++-+=..-.-|-+.+ +...| +++-.+.+.... |-.+++.+-...
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~--Lt~~Er~~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~ 90 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFL--LSVEERKQIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAK 90 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCccc--CCHHHHHHHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHH
Confidence 457778888899999988 8886654433332211 11112 233333333221 334444332211
Q ss_pred -------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccH
Q 024322 138 -------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 138 -------------~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~ 202 (269)
.| +..+.+.+.+-+++..+... -+.+++.+.|......=..+.+.+|.+...|..|=-|+.+.
T Consensus 91 ~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~--~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~~d~ 168 (288)
T cd00954 91 HAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAA--SLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTATDL 168 (288)
T ss_pred HHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCCCH
Confidence 11 22456778888888877651 27788888886544333345555666556666555566666
Q ss_pred HHHHHHHH
Q 024322 203 KRLRNAYE 210 (269)
Q Consensus 203 ~~i~~~~~ 210 (269)
..+.++..
T Consensus 169 ~~~~~~~~ 176 (288)
T cd00954 169 YDLERIRA 176 (288)
T ss_pred HHHHHHHH
Confidence 66666543
No 332
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=32.01 E-value=4.1e+02 Score=24.43 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHcCc--cc---EEEecCccHHHHHHHHHHHHhc
Q 024322 176 NEGFIDGLGDAVEQGL--VK---AVGVSNYSEKRLRNAYEKLKKR 215 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~--ir---~iGvS~~~~~~i~~~~~~~~~~ 215 (269)
.++++++++.+++.|. |. -+|+.+.+.+.+++.++.+.+.
T Consensus 135 ~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l 179 (377)
T PRK08599 135 EEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALAL 179 (377)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHcc
Confidence 5677777777777763 22 1355566666766666665443
No 333
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.00 E-value=3.7e+02 Score=23.92 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.+...++++...+.|...|+-.-.|-+...|+-- =+..-=+||+ ...+.+.+.+.++
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~-Iq~A~~rAL~---------------------~g~t~~~~lel~~ 86 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPT-IQAAHLRALA---------------------AGVTLEDTLELVE 86 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHH-HHHHHHHHHH---------------------CCCCHHHHHHHHH
Confidence 45899999999999999999977666653331110 0111122232 3466677777777
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCC
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (269)
+..+. +.+ +-+.++-.-.+.-..++-+.++++++.| |..+=+-....++-..+...++++|+.+.. +.-+.
T Consensus 87 ~~r~~-~~~-~Pivlm~Y~Npi~~~Gie~F~~~~~~~G-vdGlivpDLP~ee~~~~~~~~~~~gi~~I~------lvaPt 157 (265)
T COG0159 87 EIRAK-GVK-VPIVLMTYYNPIFNYGIEKFLRRAKEAG-VDGLLVPDLPPEESDELLKAAEKHGIDPIF------LVAPT 157 (265)
T ss_pred HHHhc-CCC-CCEEEEEeccHHHHhhHHHHHHHHHHcC-CCEEEeCCCChHHHHHHHHHHHHcCCcEEE------EeCCC
Confidence 66533 122 2233333322222345555777888887 455667778889989898888888876655 22333
Q ss_pred cchhhHHHHHHHcCCeEE
Q 024322 233 PEENGVKAACDELGITLI 250 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~vi 250 (269)
... +.++.-.++.=+++
T Consensus 158 t~~-~rl~~i~~~a~GFi 174 (265)
T COG0159 158 TPD-ERLKKIAEAASGFI 174 (265)
T ss_pred CCH-HHHHHHHHhCCCcE
Confidence 322 35555555544443
No 334
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=32.00 E-value=3.6e+02 Score=23.82 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh
Q 024322 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (269)
Q Consensus 79 ~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L 158 (269)
+.+..|++.|--.|=.+.|+|| =+..+.++.... .++.+..|- .....+.+-+.+...+.
T Consensus 103 e~l~~a~~~g~gvI~~t~H~Gn---------wE~~~~~l~~~~-----~~~~~v~~~------~~n~~~~~~~~~~R~~~ 162 (298)
T PRK08419 103 ENLLDALKKKRPIIVTTAHYGY---------WELFSLALAAYY-----GAVSIVGRL------LKSAPINEMISKRREQF 162 (298)
T ss_pred HHHHHHHHcCCCEEEEeeCccH---------HHHHHHHHHhcC-----CCeEEEEeC------CCChHHHHHHHHHHHHc
Confidence 4677888888788888889998 777888877543 266666654 22245666777777777
Q ss_pred CCCcc
Q 024322 159 GLSSV 163 (269)
Q Consensus 159 ~~d~i 163 (269)
|+..+
T Consensus 163 g~~~i 167 (298)
T PRK08419 163 GIELI 167 (298)
T ss_pred CCeeE
Confidence 76533
No 335
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=31.97 E-value=2.2e+02 Score=23.67 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=45.2
Q ss_pred HHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCc--
Q 024322 85 LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSS-- 162 (269)
Q Consensus 85 l~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~-- 162 (269)
-..|+.++.-+ .-|++.- |..+.+.|.+.+ .++++.-=. .+.+++.+++.+...++.+.-.+
T Consensus 30 R~l~~~~iNLG-fsG~~~l------e~~~a~~ia~~~-----a~~~~ld~~----~N~~~~~~~~~~~~fv~~iR~~hP~ 93 (178)
T PF14606_consen 30 RRLGLDVINLG-FSGNGKL------EPEVADLIAEID-----ADLIVLDCG----PNMSPEEFRERLDGFVKTIREAHPD 93 (178)
T ss_dssp HHHT-EEEEEE--TCCCS--------HHHHHHHHHS-------SEEEEEES----HHCCTTTHHHHHHHHHHHHHTT-SS
T ss_pred HHcCCCeEeee-ecCcccc------CHHHHHHHhcCC-----CCEEEEEee----cCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34577777654 2366666 999999999986 466665554 45889999999999999997666
Q ss_pred cceEEee
Q 024322 163 VELYQLH 169 (269)
Q Consensus 163 iDll~lH 169 (269)
.-++++-
T Consensus 94 tPIllv~ 100 (178)
T PF14606_consen 94 TPILLVS 100 (178)
T ss_dssp S-EEEEE
T ss_pred CCEEEEe
Confidence 3455553
No 336
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=31.88 E-value=3.1e+02 Score=23.08 Aligned_cols=119 Identities=11% Similarity=0.046 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.++++..+++..+++.|+.++|.--... .+.+........ .+.+++++..-.. ...+.+.+...+
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~----------~~~~~~~~~~~~---~~~~iI~S~H~f~--~tp~~~~l~~~~ 136 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLF----------PDDLKSRLAARK---GGTKIILSYHDFE--KTPSWEELIELL 136 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCC----------HHHHHHHHHHHH---TTSEEEEEEEESS-----THHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccc----------hhHHHHHHHHhh---CCCeEEEEeccCC--CCCCHHHHHHHH
Confidence 5668999999999999999999744422 232222222221 1468888777421 233444466655
Q ss_pred HHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc--CcccEEEecCccHHHHHHHH
Q 024322 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAY 209 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~i~~~~ 209 (269)
++.. .+|.|.+=+.....- ..+....++.+.++++. ..+-.+++.... .+-+++
T Consensus 137 ~~~~-~~gadivKia~~~~~-~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G--~~SRi~ 192 (224)
T PF01487_consen 137 EEMQ-ELGADIVKIAVMANS-PEDVLRLLRFTKEFREEPDIPVIAISMGELG--RISRIL 192 (224)
T ss_dssp HHHH-HTT-SEEEEEEE-SS-HHHHHHHHHHHHHHHHHTSSEEEEEEETGGG--HHHHHC
T ss_pred HHHH-hcCCCeEEEEeccCC-HHHHHHHHHHHHHHhhccCCcEEEEEcCCCc--hhHHHH
Confidence 5554 666554443333211 12344556666666654 344445554443 444443
No 337
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.78 E-value=4.2e+02 Score=24.54 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=41.3
Q ss_pred CcEEEEecCCCC---CC----CCCHHHHHHHHHHHHHHhCCCccceEEe--ecCCCCChhHHHHHHHHHHHcCcccEEEe
Q 024322 127 VEVTVATKFAAL---PW----RLGRQSVLAALKDSLFRLGLSSVELYQL--HWAGIWGNEGFIDGLGDAVEQGLVKAVGV 197 (269)
Q Consensus 127 ~~l~I~tK~~~~---~~----~~~~~~v~~~v~~sL~~L~~d~iDll~l--H~p~~~~~~~~~~~L~~L~~~G~ir~iGv 197 (269)
+++.|..|+... ++ ..+++...+-++ .|.+.|+|+|++-.- +.|.... ..+.....+|+.-++.-+++
T Consensus 210 ~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~-~l~~~gvd~i~vs~g~~~~~~~~~--~~~~~~~~~k~~~~~pv~~~ 286 (361)
T cd04747 210 PDFPIILRFSQWKQQDYTARLADTPDELEALLA-PLVDAGVDIFHCSTRRFWEPEFEG--SELNLAGWTKKLTGLPTITV 286 (361)
T ss_pred CCCeEEEEECcccccccccCCCCCHHHHHHHHH-HHHHcCCCEEEecCCCccCCCcCc--cchhHHHHHHHHcCCCEEEE
Confidence 467777788742 11 244554433333 356778887765321 1121111 11233344455445555665
Q ss_pred cCc-------------------cHHHHHHHHHH
Q 024322 198 SNY-------------------SEKRLRNAYEK 211 (269)
Q Consensus 198 S~~-------------------~~~~i~~~~~~ 211 (269)
.++ +++.++++++.
T Consensus 287 G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 319 (361)
T cd04747 287 GSVGLDGDFIGAFAGDEGASPASLDRLLERLER 319 (361)
T ss_pred CCcccccccccccccccccccCCHHHHHHHHHC
Confidence 553 66777777653
No 338
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=31.69 E-value=5.8e+02 Score=26.14 Aligned_cols=109 Identities=8% Similarity=0.085 Sum_probs=56.7
Q ss_pred CcEEEEecCCCCCC---CCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-------CChhHHHHHHHHHHHcCcccEEE
Q 024322 127 VEVTVATKFAALPW---RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVG 196 (269)
Q Consensus 127 ~~l~I~tK~~~~~~---~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~-------~~~~~~~~~L~~L~~~G~ir~iG 196 (269)
.++.|..|+....+ ..+.+... .+-+.|+..|+|+||+ |.... ....-......++|+.=+|.-|+
T Consensus 617 ~~~~v~~ri~~~~~~~~g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 692 (765)
T PRK08255 617 AEKPMSVRISAHDWVEGGNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIA 692 (765)
T ss_pred CCCeeEEEEccccccCCCCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEE
Confidence 57888899976322 23444433 3444567778766664 42211 00001122335566655566777
Q ss_pred ecCc-cHHHHHHHHHHHHhcCCCEeEEcccC-CccCCCcchhhHHHHHHHcCCe
Q 024322 197 VSNY-SEKRLRNAYEKLKKRGIPLASNQVNY-SLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 197 vS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~-n~~~~~~~~~~l~~~~~~~gi~ 248 (269)
+.+. +++.++++++. ...|.+.+-= -+.+++ =+...+++.++.
T Consensus 693 ~G~i~~~~~a~~~l~~-----g~~D~v~~gR~~l~dP~----~~~~~~~~~~~~ 737 (765)
T PRK08255 693 VGAISEADHVNSIIAA-----GRADLCALARPHLADPA----WTLHEAAEIGYR 737 (765)
T ss_pred eCCCCCHHHHHHHHHc-----CCcceeeEcHHHHhCcc----HHHHHHHHcCCC
Confidence 7776 67778888654 2344443321 122221 145666666665
No 339
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.59 E-value=3.6e+02 Score=23.76 Aligned_cols=102 Identities=22% Similarity=0.105 Sum_probs=55.1
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChh----HHHHH---HHHHHHcCcccEEEe
Q 024322 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNE----GFIDG---LGDAVEQGLVKAVGV 197 (269)
Q Consensus 127 ~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~--~~~~----~~~~~---L~~L~~~G~ir~iGv 197 (269)
.=+||.||-. -.+.|.+.-++.|.-|+. |++-. ..+- ..++- |+.+.++| +
T Consensus 66 ~ILfVgTK~~----------a~~~V~~~A~r~g~~yV~----~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~------~ 125 (252)
T COG0052 66 KILFVGTKKQ----------AQEPVKEFAERTGAYYVN----GRWLGGMLTNFKTIRKSIKRLKELEKMEEDG------F 125 (252)
T ss_pred EEEEEechHH----------HHHHHHHHHHHhCCceec----CcccCccccCchhHHHHHHHHHHHHHHhhcc------c
Confidence 4579999963 577888888999887766 43221 2231 22333 34444555 2
Q ss_pred cCccHHHHHHHHHH----HHhc-CCC-----EeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024322 198 SNYSEKRLRNAYEK----LKKR-GIP-----LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 198 S~~~~~~i~~~~~~----~~~~-~~~-----~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~s 253 (269)
+..+.++.-.+-.. -+.. |++ |+++- +.++..+. ..+..|++.||+|+|.-
T Consensus 126 ~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~----ViDp~~e~-iAv~EA~klgIPVvAlv 186 (252)
T COG0052 126 DGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLF----VIDPRKEK-IAVKEANKLGIPVVALV 186 (252)
T ss_pred ccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEE----EeCCcHhH-HHHHHHHHcCCCEEEEe
Confidence 23332221111111 0111 233 55532 34555554 37889999999999863
No 340
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=31.55 E-value=4.2e+02 Score=24.47 Aligned_cols=140 Identities=6% Similarity=0.040 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCC-----------------CCCcEEEEe
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-----------------PEVEVTVAT 133 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~-----------------~R~~l~I~t 133 (269)
..+.|+-.++++.-.+.|++.|+....-.+...+.+.-+++.+ +.+++..... .-+.+.|..
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~-~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~ 142 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVM-AAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFA 142 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHH-HHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEE
Confidence 3566888899999999999999987543221011111113333 3333321100 001111111
Q ss_pred cCCC----CCCCCCHHHHHHHHHHHHH---HhCCCccceEE---eecCCC--CChhHHHHHHHHHHHcCcccEEEecCc-
Q 024322 134 KFAA----LPWRLGRQSVLAALKDSLF---RLGLSSVELYQ---LHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY- 200 (269)
Q Consensus 134 K~~~----~~~~~~~~~v~~~v~~sL~---~L~~d~iDll~---lH~p~~--~~~~~~~~~L~~L~~~G~ir~iGvS~~- 200 (269)
..+. ...+.+++.+.+.+.+..+ ..|. ++..++ +-.|+. .+.+.+++..+++.+.| +..|.++.-
T Consensus 143 s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl-~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G-ad~I~l~DT~ 220 (347)
T PLN02746 143 SASESFSKSNINCSIEESLVRYREVALAAKKHSI-PVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG-CYEISLGDTI 220 (347)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC-CCEEEecCCc
Confidence 1110 0023445555554444443 2343 233223 233443 45677777777787777 456777643
Q ss_pred ---cHHHHHHHHHHHH
Q 024322 201 ---SEKRLRNAYEKLK 213 (269)
Q Consensus 201 ---~~~~i~~~~~~~~ 213 (269)
++.++.++++..+
T Consensus 221 G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 221 GVGTPGTVVPMLEAVM 236 (347)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 5677766666543
No 341
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=31.55 E-value=1.1e+02 Score=23.79 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEE-EecCC-CCCCCCCHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTV-ATKFA-ALPWRLGRQSVLAA 150 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I-~tK~~-~~~~~~~~~~v~~~ 150 (269)
.-+++.+++..+++.|-+.| .+|+|.| +-.++....++.......+++...+. .+... ....+...+ .--
T Consensus 20 ~i~~aa~~i~~~~~~gg~i~----~~G~G~S--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~ 91 (138)
T PF13580_consen 20 AIEKAADLIAEALRNGGRIF----VCGNGHS--AAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYD--EGF 91 (138)
T ss_dssp HHHHHHHHHHHHHHTT--EE----EEESTHH--HHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGG--GTH
T ss_pred HHHHHHHHHHHHHHCCCEEE----EEcCchh--hhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchh--hHH
Confidence 45788899999999999988 4677765 11345566666655443211221111 11000 000001111 111
Q ss_pred HHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEec
Q 024322 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (269)
Q Consensus 151 v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS 198 (269)
.+..++.+...-=|++++-... -....++++++..|+.|. +-||++
T Consensus 92 ~~~~~~~~~~~~gDvli~iS~S-G~s~~vi~a~~~Ak~~G~-~vIalT 137 (138)
T PF13580_consen 92 ARQLLALYDIRPGDVLIVISNS-GNSPNVIEAAEEAKERGM-KVIALT 137 (138)
T ss_dssp HHHHHHHTT--TT-EEEEEESS-S-SHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEECCC-CCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 2223333345566777776643 234567777777777764 334443
No 342
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.46 E-value=77 Score=25.43 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=33.2
Q ss_pred EEEecCcc--HHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcccc
Q 024322 194 AVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELL 261 (269)
Q Consensus 194 ~iGvS~~~--~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~ 261 (269)
.+|+..|+ .+.+.++++. .-|++ .|....+.++ +++..+.++++.++..|.+.++.++
T Consensus 19 k~GlDgHd~gakvia~~l~d-----~GfeV---i~~g~~~tp~--e~v~aA~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 19 KLGLDGHDRGAKVIARALAD-----AGFEV---INLGLFQTPE--EAVRAAVEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred ccCccccccchHHHHHHHHh-----CCceE---EecCCcCCHH--HHHHHHHhcCCCEEEEEeccchHHH
Confidence 45666663 3556666543 23444 3334444444 4677777777777777777766554
No 343
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=31.44 E-value=2.5e+02 Score=28.54 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=51.1
Q ss_pred EeecCCCCChhHHHHHHHHHHHcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHH
Q 024322 167 QLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD 243 (269)
Q Consensus 167 ~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~ 243 (269)
+||.|. .+.+.+++.+.+....-.|.+|=++-+ +-..|.+++..|.+.|..+ .+.++...-..+.....+.+.++
T Consensus 333 LLh~PY-~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V-~v~veLkArfde~~ni~wa~~le 410 (672)
T TIGR03705 333 LLHHPY-ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEV-TVVVELKARFDEEANIRWARRLE 410 (672)
T ss_pred EEECCc-cCHHHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEE-EEEEEehhhccchhhHHHHHHHH
Confidence 455553 234567788999999999999999877 2234445555566777544 33455444333322224677778
Q ss_pred HcCCeEE
Q 024322 244 ELGITLI 250 (269)
Q Consensus 244 ~~gi~vi 250 (269)
+.|+.|+
T Consensus 411 ~aG~~vi 417 (672)
T TIGR03705 411 EAGVHVV 417 (672)
T ss_pred HcCCEEE
Confidence 8888765
No 344
>PRK09061 D-glutamate deacylase; Validated
Probab=31.41 E-value=4.9e+02 Score=25.20 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
-++..++++.|++.|...|=+...|-.+.+ ...+-+.++... +.+..|......... .+......++++
T Consensus 168 l~~m~~ll~~al~~Ga~gis~~~~y~p~~~------~~eL~~l~~~A~----~~g~~v~~H~e~~~~-~~~~~e~~av~~ 236 (509)
T PRK09061 168 LAEILELLEQGLDEGALGIGIGAGYAPGTG------HKEYLELARLAA----RAGVPTYTHVRYLSN-VDPRSSVDAYQE 236 (509)
T ss_pred HHHHHHHHHHHHHCCCCEEecCCccCCCCC------HHHHHHHHHHHH----HcCCEEEEEecCccc-CCchhHHHHHHH
Confidence 345778899999999999977666654444 666666666554 346666666632100 122223334444
Q ss_pred HHHHhCCCccceEEeecCC--CCChhHHHHHHHHHHHcCcccEEEecCc
Q 024322 154 SLFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~--~~~~~~~~~~L~~L~~~G~ir~iGvS~~ 200 (269)
.++....--.-+.+.|--. .....+.++.+++++++|.--..-++-|
T Consensus 237 ~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 237 LIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred HHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 4433221113356666432 2345778888999999985444445443
No 345
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.41 E-value=1.3e+02 Score=22.72 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
+.+.++++.+...|.+-.++|-. ..+.+++++|+++|+.++.=..
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g-------~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG-------AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT-------S--HHHHHHHHHTT-EEEESS-
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc-------hHHHHHHHHHHHcCCEEEeCCc
Confidence 33333333333344555555544 2223699999999999885433
No 346
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=31.10 E-value=3.5e+02 Score=23.41 Aligned_cols=74 Identities=24% Similarity=0.236 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeE
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (269)
...+.+.+++.++++| |.++++. .+...+.....+.++.+..++ +..|-++..+.+.+...++.+...++|+..
T Consensus 13 ~~~~~~gi~~~a~~~g--~~~~i~~-~~~~~d~~~q~~~i~~l~~~~-vdgiIi~~~~~~~~~~~l~~~~~~giPvV~ 86 (302)
T TIGR02637 13 FEAANKGAEEAAKELG--SVYIIYT-GPTGTTAEGQIEVVNSLIAQK-VDAIAISANDPDALVPALKKAMKRGIKVVT 86 (302)
T ss_pred HHHHHHHHHHHHHHhC--CeeEEEE-CCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCChHHHHHHHHHHHHCCCEEEE
Confidence 4567788888888887 3333332 221233455567777777654 677777766655555555555555665443
No 347
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=31.10 E-value=3.9e+02 Score=23.96 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=76.3
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC------------
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA------------ 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~------------ 137 (269)
+.+|.+...+.++..++.|++-+=..-..|-..+--.+.=++++-.+.+.... |-.|++.+-...
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG---RVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHHH
Confidence 46788999999999999999866544333332110000112344445544431 345555554321
Q ss_pred ----------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHH
Q 024322 138 ----------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 138 ----------~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i 205 (269)
.| +..+.+.+.+-+++..+.. +.+.+++.|.|......=..+.+.+|.+-..|..|=-|+ +..++
T Consensus 101 ~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~--~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnivgiKdss-d~~~~ 177 (309)
T cd00952 101 DLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV--PEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKYLG-DIGAL 177 (309)
T ss_pred HhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhC--CCCcEEEEcCchhcCCCCCHHHHHHHhcCCCEEEEEecC-ChHHH
Confidence 12 2345577777777777753 248888888886643222244555665555565555566 66665
Q ss_pred HHHHH
Q 024322 206 RNAYE 210 (269)
Q Consensus 206 ~~~~~ 210 (269)
.++++
T Consensus 178 ~~~i~ 182 (309)
T cd00952 178 LSDLA 182 (309)
T ss_pred HHHHH
Confidence 55543
No 348
>PRK05826 pyruvate kinase; Provisional
Probab=30.76 E-value=5e+02 Score=25.06 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=57.0
Q ss_pred HHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 024322 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (269)
Q Consensus 77 ~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~ 156 (269)
-...+..+++.|+.++-.+-....- . -+.+.+.+.+.+ .+++.|..|+. +++.+ +.+++.++
T Consensus 175 D~~~i~~ald~g~d~I~~sfV~sae-d------v~~l~~~l~~~~----~~~~~iiakIE------t~eav-~nldeI~~ 236 (465)
T PRK05826 175 DKADIKFAAEQGVDYIAVSFVRSAE-D------VEEARRLLREAG----CPHAKIIAKIE------RAEAV-DNIDEIIE 236 (465)
T ss_pred hHHHHHHHHHCCCCEEEECCCCCHH-H------HHHHHHHHHHcC----CcCceEEEEEc------CHHHH-HhHHHHHH
Confidence 3445788999999998765443320 0 123356666554 23799999993 45545 46677666
Q ss_pred HhCCCccceEEeecCCC---CChhHHHHH----HHHHHHcCcc
Q 024322 157 RLGLSSVELYQLHWAGI---WGNEGFIDG----LGDAVEQGLV 192 (269)
Q Consensus 157 ~L~~d~iDll~lH~p~~---~~~~~~~~~----L~~L~~~G~i 192 (269)
. +|-+++-.-|- .+.+++..+ ++..++.||.
T Consensus 237 ~-----~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKp 274 (465)
T PRK05826 237 A-----SDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKP 274 (465)
T ss_pred H-----cCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCC
Confidence 5 89999887553 333333333 4556777874
No 349
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=30.74 E-value=4.3e+02 Score=24.33 Aligned_cols=156 Identities=14% Similarity=0.126 Sum_probs=86.1
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCC-------CCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-----
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASF-------GAINSETLLGRFIKERKQRDPEVEVTVATKFAA----- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~-------~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~----- 137 (269)
+..+.+.+-++.+.|-+.|..+=-..=...+...+ ....-.+.+-+.|+....++ |+. .++.=+-.
T Consensus 77 G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~~e~~~~~~~~~~e~hI~tV~~rY-kg~-~~sWDVVNE~vdd 154 (345)
T COG3693 77 GRFNFEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFGDELSKEALAKMVEEHIKTVVGRY-KGS-VASWDVVNEAVDD 154 (345)
T ss_pred CccCccchHHHHHHHHHcCCeeccceeeecccCCchhhccccChHHHHHHHHHHHHHHHHhc-cCc-eeEEEecccccCC
Confidence 34446777888999988887521111011110000 00012444555555444444 333 22222211
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC----CChhHHHHHHHHHHHcCc-ccEEEecCc---
Q 024322 138 ---------LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY--- 200 (269)
Q Consensus 138 ---------~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~----~~~~~~~~~L~~L~~~G~-ir~iGvS~~--- 200 (269)
+.....+|.|+.+++...+. |-=-.|++..-+. .....++.-+++|+++|. |-.||+-.|
T Consensus 155 ~g~~R~s~w~~~~~gpd~I~~aF~~Area---dP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~ 231 (345)
T COG3693 155 QGSLRRSAWYDGGTGPDYIKLAFHIAREA---DPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSG 231 (345)
T ss_pred CchhhhhhhhccCCccHHHHHHHHHHHhh---CCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecC
Confidence 01134577788888777762 3222333332211 124567888999999999 999998754
Q ss_pred ---cHHHHHHHHHHHHhcCCCEeEEcccCCccC
Q 024322 201 ---SEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 201 ---~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (269)
+.+....++....+.|+++.+-.+..+...
T Consensus 232 ~~~~~~~~~~a~~~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 232 DGPSIEKMRAALLKFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred CCCCHHHHHHHHHHHhhcCCCceEEEeeeeccC
Confidence 456666666655566888888888777754
No 350
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.69 E-value=3.8e+02 Score=23.66 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecC-CC---CChhHHHHHHHHHHH--cCcc-cEEEecCccHHHHHHHHHHH
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWA-GI---WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p-~~---~~~~~~~~~L~~L~~--~G~i-r~iGvS~~~~~~i~~~~~~~ 212 (269)
...+.+.+++.++..++.+|++- +++-.- .. .+.+|-.+.++..++ .|++ -..|++..+.+...+..+.+
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~g---i~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDG---LYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCE---EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHH
Confidence 35778889999998888767654 444322 21 345555555555544 3554 45699888888877777778
Q ss_pred HhcCCCEeEEcccCCccCCCcchhhHHHH----HHHc-CCeEEEccc
Q 024322 213 KKRGIPLASNQVNYSLIYRKPEENGVKAA----CDEL-GITLIAYCP 254 (269)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~----~~~~-gi~via~sp 254 (269)
++.|..-..+.-+|..- . .+++++++ |+.- +++|+.|..
T Consensus 93 ~~~Gad~v~~~~P~y~~-~--~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 93 EELGYDAISAITPFYYK-F--SFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HHcCCCEEEEeCCCCCC-C--CHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 88776554444454322 1 12245554 5556 789999853
No 351
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=30.64 E-value=4.2e+02 Score=24.21 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA 95 (269)
.+.++..++++...++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 456899999999999999999985
No 352
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=30.48 E-value=2.5e+02 Score=26.73 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCccc-----EEEecCccH------HHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024322 180 IDGLGDAVEQGLVK-----AVGVSNYSE------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 180 ~~~L~~L~~~G~ir-----~iGvS~~~~------~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (269)
++.|.+|.++|+|. ++++.+... ..-.++...++.+++.-.+.--.+-.++|.-. -+....++.||+
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga--~m~keiE~~GIP 366 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGA--TMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHH--HHHHHHHHcCCC
Confidence 78899999999996 555554422 22335555566667655554445666665443 267777888998
Q ss_pred EEEcccc
Q 024322 249 LIAYCPI 255 (269)
Q Consensus 249 via~spl 255 (269)
++-+..+
T Consensus 367 vV~i~~~ 373 (431)
T TIGR01917 367 VVHICTV 373 (431)
T ss_pred EEEEeec
Confidence 8876543
No 353
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.46 E-value=3.8e+02 Score=23.62 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCC--------------------hhHHHHHHHHHHHcCcccEEEecCccH---HH
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGIWG--------------------NEGFIDGLGDAVEQGLVKAVGVSNYSE---KR 204 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~~~--------------------~~~~~~~L~~L~~~G~ir~iGvS~~~~---~~ 204 (269)
.+...+.++.|.-.-.|++-|--|-..| .+.+++.+.+++++-.+.-+=++-+|+ --
T Consensus 28 ~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 28 IVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhC
Q ss_pred HHHHHHHHHhcCCC-EeEEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 024322 205 LRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 205 i~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
++++++.+.+.|+. +.+ +..+..+.+++++.|+++|+..+
T Consensus 108 ~e~F~~~~~~aGvdgvii------pDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 108 INKFIKKISQAGVKGLII------PDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred HHHHHHHHHHcCCeEEEe------cCCCHHHHHHHHHHHHHcCCCEE
No 354
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=30.43 E-value=3.9e+02 Score=23.76 Aligned_cols=112 Identities=14% Similarity=0.008 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHHh---CCCccceEEeecCCC---CChhH----HHHHHHHHHHcCcccE-EEec---CccHHHHHH
Q 024322 142 LGRQSVLAALKDSLFRL---GLSSVELYQLHWAGI---WGNEG----FIDGLGDAVEQGLVKA-VGVS---NYSEKRLRN 207 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L---~~d~iDll~lH~p~~---~~~~~----~~~~L~~L~~~G~ir~-iGvS---~~~~~~i~~ 207 (269)
.+++.++......++++ |+-|+|+.+--.... .+.++ +.+++++.+++-.|+. +.++ +.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Confidence 56777777777776655 787888663321111 22333 3556666666533331 2222 235566666
Q ss_pred HHHHHHhcCCCEeEEcccCCccC--CCc-chhhHHHHHHHcCCeEEEccc
Q 024322 208 AYEKLKKRGIPLASNQVNYSLIY--RKP-EENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 208 ~~~~~~~~~~~~~~~q~~~n~~~--~~~-~~~~l~~~~~~~gi~via~sp 254 (269)
.++.+.+..-. .++.+.+..-. ... .-..+++.|+++|+.+..+..
T Consensus 146 ~~~~~~~~~~~-~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~ 194 (325)
T cd01320 146 TLELALKYRDK-GVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAG 194 (325)
T ss_pred HHHHHHhccCC-CEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCC
Confidence 66654432211 12333322111 111 112588899999988887753
No 355
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=30.39 E-value=2.5e+02 Score=26.95 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=49.1
Q ss_pred HHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcC--CC-EeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024322 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG--IP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 181 ~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~--~~-~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~s 253 (269)
+-...+-+.|-+.++|....+++++++.+...+..- .+ |-+|-+ .++-+...+ ..+++.|.+++|.++..+
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e-~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALE-WGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccH-HHHHHHHHHcCCCEEEec
Confidence 344556788999999999999999999888776522 24 555543 232222222 258999999999987665
No 356
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=30.28 E-value=1.2e+02 Score=27.87 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=23.4
Q ss_pred eEEcccCCccCCCcchh---hHHHHHHHcCCeEEEccccc
Q 024322 220 ASNQVNYSLIYRKPEEN---GVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 220 ~~~q~~~n~~~~~~~~~---~l~~~~~~~gi~via~spl~ 256 (269)
+.....||..+....++ ++.+.|+++||.+-.|-...
T Consensus 122 ~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 122 PSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp --TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 33445666665443332 68999999999999887765
No 357
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.25 E-value=4.8e+02 Score=24.77 Aligned_cols=18 Identities=6% Similarity=-0.092 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHHHhC
Q 024322 142 LGRQSVLAALKDSLFRLG 159 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~ 159 (269)
.+++.+++-++...++++
T Consensus 117 l~~~~l~~ll~~i~~~~~ 134 (453)
T PRK13347 117 LNPDQFERLMAALRDAFD 134 (453)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 444555555544444443
No 358
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=30.12 E-value=2.2e+02 Score=26.81 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=44.3
Q ss_pred ccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHH
Q 024322 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 162 ~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (269)
.+|++.+|.-...+.+++.+..++..+.=.+ -+=+.+.+++.++++++.+... +|-+.-..- .+.+ .+.+.
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~--kpLL~aAt~----eNyk--~m~~l 139 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGK--KPLLYAATE----ENYK--AMAAL 139 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS----EEEEEBT----TTHH--HHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcC--CcEEeEcCH----HHHH--HHHHH
Confidence 5677777764432246666666666654332 2333344788888887765422 232211111 1112 47788
Q ss_pred HHHcCCeEEEccccc
Q 024322 242 CDELGITLIAYCPIA 256 (269)
Q Consensus 242 ~~~~gi~via~spl~ 256 (269)
|+++|..+++++|..
T Consensus 140 A~~y~~pl~v~sp~D 154 (386)
T PF03599_consen 140 AKEYGHPLIVSSPID 154 (386)
T ss_dssp HHHCT-EEEEE-SSC
T ss_pred HHHcCCeEEEEeccc
Confidence 888888888887653
No 359
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=30.01 E-value=2.7e+02 Score=25.10 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHH-cCcccEEEecCc---cHHHHHHHHHHHHhcCCC-EeE
Q 024322 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE-QGLVKAVGVSNY---SEKRLRNAYEKLKKRGIP-LAS 221 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~-~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~-~~~ 221 (269)
....+++.|+.-.=.-+|.+.+.-|.- ..++.+...+.++. .| +|=|++= .....++-+..+++.+++ +-+
T Consensus 141 k~~~I~qflk~vdwg~lDyLviDtPPG-tsDehls~~~~~~~~~g---AviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGv 216 (300)
T KOG3022|consen 141 KNSMIKQFLKDVDWGELDYLVIDTPPG-TSDEHLSLVQFLRESDG---AVIVTTPQEVALQDVRKEIDFCRKAGIPILGV 216 (300)
T ss_pred HHHHHHHHHhcCCCCCcCEEEEeCCCC-CChhhhheeecccccCc---eEEEeCchhhhhHHHHhhhhhhhhcCCceEEE
Confidence 455667777765444599999998753 34566777777777 44 4445542 334556677788888877 444
Q ss_pred EcccCCccCCCcch-------hhHHHHHHHcCCeEEEccccc
Q 024322 222 NQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 222 ~q~~~n~~~~~~~~-------~~l~~~~~~~gi~via~spl~ 256 (269)
+++.-....+...+ .+--++|++.|+.++..-|+.
T Consensus 217 VENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld 258 (300)
T KOG3022|consen 217 VENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLD 258 (300)
T ss_pred EeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCC
Confidence 44443333332211 145789999999999998875
No 360
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.96 E-value=4.5e+02 Score=24.34 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=60.4
Q ss_pred EeecCCC------------CChhHHHHHHHHHH-HcCc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEeEEcccCCc
Q 024322 167 QLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (269)
Q Consensus 167 ~lH~p~~------------~~~~~~~~~L~~L~-~~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~n~ 228 (269)
-||.++. ++.+++++++.++. +.|+ |+++=+.++ +.+.++++.+.++. .+..++-++||+
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn~ 302 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILFNP 302 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeCCC
Confidence 3888765 23467888887554 4454 556656655 67888888887664 356888899998
Q ss_pred cCCC----cchh---hHHHHHHHcCCeEEEcccccCc
Q 024322 229 IYRK----PEEN---GVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 229 ~~~~----~~~~---~l~~~~~~~gi~via~spl~~G 258 (269)
+... +..+ .+.+..+++|+.+......+.-
T Consensus 303 ~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~d 339 (356)
T PRK14462 303 HEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLD 339 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 7632 2211 2455677789999998877543
No 361
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=29.88 E-value=3.9e+02 Score=23.61 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=73.2
Q ss_pred chhhHHHHHHHHHHHHH-CCCCEEEcccccCCCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEecCCC---------
Q 024322 70 DDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSE--TLLGRFIKERKQRDPEVEVTVATKFAA--------- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~-~Gvn~~DtA~~Yg~g~~~~~~~se--~~lG~al~~~~~~~~R~~l~I~tK~~~--------- 137 (269)
+.++.+..++.++..++ .|++-|=..-..|.+.+ +-..| +++-.+.+.... |-.|+..+-...
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~--Ls~eEr~~~~~~~~~~~~~---~~~viagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFL--LSTEEKKQVLEIVAEEAKG---KVKLIAQVGSVNTAEAQELAK 93 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCcccccc--CCHHHHHHHHHHHHHHhCC---CCCEEecCCCCCHHHHHHHHH
Confidence 45788999999999999 99986654443332211 11112 233334443331 334454442211
Q ss_pred -------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccH
Q 024322 138 -------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 138 -------------~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~ 202 (269)
.| ...+.+.+.+-+++..+..+ +.+++.+.|......=..+.+.+|.+...|..|=-|+.+.
T Consensus 94 ~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~---lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~~d~ 170 (293)
T PRK04147 94 YATELGYDAISAVTPFYYPFSFEEICDYYREIIDSAD---NPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGDL 170 (293)
T ss_pred HHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC---CCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCCCCH
Confidence 11 23355677777777776643 6788888776533222344555555556666555566666
Q ss_pred HHHHHHHH
Q 024322 203 KRLRNAYE 210 (269)
Q Consensus 203 ~~i~~~~~ 210 (269)
.++.++..
T Consensus 171 ~~~~~~~~ 178 (293)
T PRK04147 171 YQLERIRK 178 (293)
T ss_pred HHHHHHHH
Confidence 66666543
No 362
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.82 E-value=1.6e+02 Score=27.47 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=55.6
Q ss_pred eEEeecCCCCCh-hHHHHHHHHHHHc------CcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhh
Q 024322 165 LYQLHWAGIWGN-EGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (269)
Q Consensus 165 ll~lH~p~~~~~-~~~~~~L~~L~~~------G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 237 (269)
++++..|-+... ++-++.+.+|.++ +.--..|-+.++.+.++++++. --.+++|+..+-.-.-.+-..
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~k 303 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTID 303 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHH
Confidence 346666643211 1346777777766 4444666667788888888664 347788877766443222335
Q ss_pred HHHHHHHcCCeEEEccc
Q 024322 238 VKAACDELGITLIAYCP 254 (269)
Q Consensus 238 l~~~~~~~gi~via~sp 254 (269)
+.++|+.+||.++..+.
T Consensus 304 ia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 304 AVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHcCCcEEEeCC
Confidence 89999999999998754
No 363
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=29.73 E-value=5.4e+02 Score=25.15 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=64.8
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC
Q 024322 95 AEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (269)
Q Consensus 95 A~~Yg~g~~~~~~~se~~lG~al~~~~~~~~-R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~ 173 (269)
.-.||. |+.|-++|.+....++ .+-++|.|=+. ...--|.|...+++.-++.. -++++.+|.|+.
T Consensus 106 diVfGG---------e~kL~~~I~ea~~~~~~p~~I~V~tTC~---t~lIGDDi~av~k~~~~~~~--~~pVi~v~tpGF 171 (513)
T TIGR01861 106 HVVFGA---------EKLLKQNIIEAFKAFPHIKRMTIYQTCA---TALIGDDIAAIAKEVMEEMP--DVDIFVCNSPGF 171 (513)
T ss_pred ceEeCc---------HHHHHHHHHHHHHhCCCCCeEEEEccCc---hhhccCCHHHHHHHHHHhcC--CCcEEEEeCCCc
Confidence 346786 8877776666554432 45678877774 34556667777776665541 278999999987
Q ss_pred CC------hhHHHHH-HHHHHH--------cCcccEEEecCc--cHHHHHHHHHHHHhcCCCEeE
Q 024322 174 WG------NEGFIDG-LGDAVE--------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 174 ~~------~~~~~~~-L~~L~~--------~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~ 221 (269)
.. ...+.++ +++++. .+.|--||-.|+ +.+.++++ .+..|+++.+
T Consensus 172 ~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~l---Le~~Gl~v~~ 233 (513)
T TIGR01861 172 AGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDY---FQRMGIQVLS 233 (513)
T ss_pred cCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHH---HHHCCCeEEE
Confidence 33 2222322 334432 245777886565 44555555 4556666553
No 364
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.66 E-value=4.4e+02 Score=24.15 Aligned_cols=101 Identities=8% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHhCCCccc---eEEeecCCC------------CChhHHHHHHHHHHHcC----cccEEEecCc--cHHHHHHHHHHHH
Q 024322 155 LFRLGLSSVE---LYQLHWAGI------------WGNEGFIDGLGDAVEQG----LVKAVGVSNY--SEKRLRNAYEKLK 213 (269)
Q Consensus 155 L~~L~~d~iD---ll~lH~p~~------------~~~~~~~~~L~~L~~~G----~ir~iGvS~~--~~~~i~~~~~~~~ 213 (269)
+++|--+-++ .+-||.++. .+.+++++++.+..++. +|+++=+.++ +.++++++.+.++
T Consensus 193 i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~ 272 (343)
T PRK14468 193 IRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLR 272 (343)
T ss_pred HHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHh
Q ss_pred hcCCCEeEEcccCCccCCCcch-------hhHHHHHHHcCCeEEEcccccC
Q 024322 214 KRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~-------~~l~~~~~~~gi~via~spl~~ 257 (269)
.. ...++-++||+....... ..+.+..+++|+.+......+.
T Consensus 273 ~~--~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 273 GL--VSHVNLIPFNPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGR 321 (343)
T ss_pred cC--CcEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
No 365
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=29.66 E-value=4.4e+02 Score=24.08 Aligned_cols=183 Identities=16% Similarity=0.058 Sum_probs=94.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCC--CCCCcE-----EEEecCC
Q 024322 64 WNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQR--DPEVEV-----TVATKFA 136 (269)
Q Consensus 64 ~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~--~~R~~l-----~I~tK~~ 136 (269)
|+...... .++..+++-+.+|++|.+.+-|...+.+-..+.--.+++..-+..+.+... ..|+.+ +|+.-+|
T Consensus 43 Ws~~~~~s-~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiG 121 (317)
T KOG1579|consen 43 WSAEALAS-NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIG 121 (317)
T ss_pred CCchhhcc-ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecc
Confidence 55443332 358888999999999999999976654411100001122222222221100 012222 5555565
Q ss_pred CC--------------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc--CcccEEEecCc
Q 024322 137 AL--------------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNY 200 (269)
Q Consensus 137 ~~--------------~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~ 200 (269)
++ ....+.+.+.+-.++.|+.+.-.-+|++.+..... ..|.--+++-|++. .+=-.|+++-.
T Consensus 122 p~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~--~~EA~a~l~~l~~~~~~~p~~is~t~~ 199 (317)
T KOG1579|consen 122 PYGATLADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPN--VAEAKAALELLQELGPSKPFWISFTIK 199 (317)
T ss_pred cccceecCCcccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCC--HHHHHHHHHHHHhcCCCCcEEEEEEec
Confidence 41 12345667777788888887656699999986422 23333333333332 22235555532
Q ss_pred ------cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHH-HHcCCeEEEc
Q 024322 201 ------SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC-DELGITLIAY 252 (269)
Q Consensus 201 ------~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~-~~~gi~via~ 252 (269)
+.+.+++++... +++.++..+=+++........ -+.++. +--++.+++|
T Consensus 200 d~g~l~~G~t~e~~~~~~-~~~~~~~~IGvNC~~~~~~~~--~~~~L~~~~~~~~llvY 255 (317)
T KOG1579|consen 200 DEGRLRSGETGEEAAQLL-KDGINLLGIGVNCVSPNFVEP--LLKELMAKLTKIPLLVY 255 (317)
T ss_pred CCCcccCCCcHHHHHHHh-ccCCceEEEEeccCCchhccH--HHHHHhhccCCCeEEEe
Confidence 335566665532 333346666666654443222 234444 4457888877
No 366
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=29.65 E-value=3e+02 Score=23.54 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
...++++..++.+.+++.|..|+=|+.-|+.+.. +.+.+....+..+. +-.+..+--+ .+.+...+
T Consensus 131 ~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~ga-----t~~~v~~m~~~~~~---~~~IKasGGI------rt~~~a~~ 196 (221)
T PRK00507 131 CLLTDEEKVKACEIAKEAGADFVKTSTGFSTGGA-----TVEDVKLMRETVGP---RVGVKASGGI------RTLEDALA 196 (221)
T ss_pred CcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC-----CHHHHHHHHHHhCC---CceEEeeCCc------CCHHHHHH
Q ss_pred HHHHHHHHhCCCc
Q 024322 150 ALKDSLFRLGLSS 162 (269)
Q Consensus 150 ~v~~sL~~L~~d~ 162 (269)
-++.--.|+|+++
T Consensus 197 ~i~aGA~riGtS~ 209 (221)
T PRK00507 197 MIEAGATRLGTSA 209 (221)
T ss_pred HHHcCcceEccCc
No 367
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=29.63 E-value=4.2e+02 Score=23.88 Aligned_cols=168 Identities=16% Similarity=0.148 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcc----cccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTA----EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA----~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~ 148 (269)
+.++..+.++.+.+.|++.+=-. +.|.++. ...+.+.++...... .++.|-.-... ...+.+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g-------~~~l~~li~~I~~~~--p~i~Ievl~~d--~~g~~e--- 157 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGG-------ASHLAECIEAIREKL--PNIKIETLVPD--FRGNIA--- 157 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCccccc-------HHHHHHHHHHHHhcC--CCCEEEEeCCc--ccCCHH---
Confidence 56788899999999999866422 2243211 345666666654221 12222221110 011222
Q ss_pred HHHHHHHHHhCCCcc-------ceEEeecCCCCChhHHHHHHHHHHHc--C-ccc---EEEecCccHHHHHHHHHHHHhc
Q 024322 149 AALKDSLFRLGLSSV-------ELYQLHWAGIWGNEGFIDGLGDAVEQ--G-LVK---AVGVSNYSEKRLRNAYEKLKKR 215 (269)
Q Consensus 149 ~~v~~sL~~L~~d~i-------Dll~lH~p~~~~~~~~~~~L~~L~~~--G-~ir---~iGvS~~~~~~i~~~~~~~~~~ 215 (269)
.++.. ..-|.|.+ +-++=+--.....++.++.|+.+++. | .++ -+|+ +=+.+++.+.+...+..
T Consensus 158 -~l~~l-~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~etl~~Lrel 234 (302)
T TIGR00510 158 -ALDIL-LDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIKQTLKDLRDH 234 (302)
T ss_pred -HHHHH-HHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHHHHHHHHHhc
Confidence 22222 12222211 11111100124577889999999997 3 233 4677 55888888888888877
Q ss_pred CCC-EeEEccc-----CCccCCC--cch-hhHHHHHHHcCCeEEEcccccC
Q 024322 216 GIP-LASNQVN-----YSLIYRK--PEE-NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 216 ~~~-~~~~q~~-----~n~~~~~--~~~-~~l~~~~~~~gi~via~spl~~ 257 (269)
++. ..+.|.- ..++... +++ +.+-+.+.+.|...++.+||-+
T Consensus 235 g~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vr 285 (302)
T TIGR00510 235 GVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVR 285 (302)
T ss_pred CCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccch
Confidence 754 4444431 1111111 111 2467788888999999999854
No 368
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=29.28 E-value=1.4e+02 Score=27.57 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=13.6
Q ss_pred hhHHHHHHHcCCeEEEc
Q 024322 236 NGVKAACDELGITLIAY 252 (269)
Q Consensus 236 ~~l~~~~~~~gi~via~ 252 (269)
..+.+.|+++||.+-.+
T Consensus 213 ~~i~~~c~~rgI~lASH 229 (377)
T COG3454 213 QAIAALCRERGIALASH 229 (377)
T ss_pred HHHHHHHHHcCCceecC
Confidence 36899999999987543
No 369
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=29.25 E-value=4.8e+02 Score=24.41 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=63.9
Q ss_pred cccccCCCCCCCCCchHHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCC
Q 024322 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (269)
Q Consensus 94 tA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R-~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~ 172 (269)
..-.||. ++.+-++|.+...++|+ +=++|.|=+. ...--+.++..+++.-++.+ -++++.+|.|+
T Consensus 65 ~d~VfGg---------~~~L~~aI~~~~~~~p~p~~i~V~~tc~---~~liGdDi~~v~~~~~~~~~--~~~vi~v~tpg 130 (415)
T cd01977 65 SHVVFGG---------EKKLKKNIIEAFKEFPDIKRMTVYTTCT---TALIGDDIKAVAKEVMEELP--DVDIFVCNAPG 130 (415)
T ss_pred cceeecc---------HHHHHHHHHHHHHhCCCCcEEEEECCCc---hhhhcCCHHHHHHHHHHhcC--CCeEEEEeCCC
Confidence 3456787 88888888876654433 3367777664 33445556666666555543 26899999988
Q ss_pred CCCh------hHHHHH-HHHHH--------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEe
Q 024322 173 IWGN------EGFIDG-LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 173 ~~~~------~~~~~~-L~~L~--------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (269)
.... ..+..+ ++++. +.+.|--||-.++ ...++++.+..+..|+++.
T Consensus 131 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~-~~d~~ei~~lL~~~Gl~v~ 192 (415)
T cd01977 131 FAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNI-QGDTEVLQKYFERMGIQVL 192 (415)
T ss_pred cCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCC-cccHHHHHHHHHHcCCeEE
Confidence 7431 111222 33343 1366888885443 2334444444556676653
No 370
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=29.19 E-value=4.5e+02 Score=24.05 Aligned_cols=137 Identities=23% Similarity=0.257 Sum_probs=65.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hhHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~-----~~~~~~~L~ 184 (269)
|+.+-...+...... .+-++|.+=+. ...-.+.+...+++.-++. -+.++.+|.+.... .+.++.+|.
T Consensus 66 e~l~~~i~~~~~~~~-p~~i~v~~tc~---~~liGdDi~~v~~~~~~~~---~~~vv~~~~~gf~~~~~~G~~~a~~~~~ 138 (399)
T cd00316 66 EKLLEAIINELKRYK-PKVIFVYTTCT---TELIGDDIEAVAKEASKEI---GIPVVPASTPGFRGSQSAGYDAAVKAII 138 (399)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEecCch---hhhhccCHHHHHHHHHHhh---CCceEEeeCCCCcccHHHHHHHHHHHHH
Confidence 444444444333221 34556665553 2233333444444433343 37788888876632 333444443
Q ss_pred HH-H--------HcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEeEEcc--------------cCCccCCCcchhhH
Q 024322 185 DA-V--------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYRKPEENGV 238 (269)
Q Consensus 185 ~L-~--------~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~--------------~~n~~~~~~~~~~l 238 (269)
+. . +++.|--||.+.. +.+.|+++ .+..|+++..+-- .+|+......-..+
T Consensus 139 ~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~l---l~~~G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~~~~g~~~ 215 (399)
T cd00316 139 DHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRL---LEEMGIRVNALFDGGTTVEELRELGNAKLNLVLCRESGLYL 215 (399)
T ss_pred HHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHH---HHHcCCcEEEEcCCCCCHHHHHhhccCcEEEEecHhHHHHH
Confidence 32 2 2345777887765 34555555 4455655544321 12222211011124
Q ss_pred HHHHHHc-CCeEEEccccc
Q 024322 239 KAACDEL-GITLIAYCPIA 256 (269)
Q Consensus 239 ~~~~~~~-gi~via~spl~ 256 (269)
.++.+++ |++.+...|++
T Consensus 216 a~~l~~~~g~p~~~~~p~G 234 (399)
T cd00316 216 ARYLEEKYGIPYILINPIG 234 (399)
T ss_pred HHHHHHHhCCCeEEeCCcC
Confidence 4555544 88888777664
No 371
>PRK10200 putative racemase; Provisional
Probab=29.14 E-value=3.7e+02 Score=23.02 Aligned_cols=64 Identities=9% Similarity=-0.006 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-------------ChhHHHHHHHHHHHcCcccEEEecCccHHHH
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-------------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~-------------~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i 205 (269)
.-+.+..++-++..-.+.+-|++|.+.+|.++.. +.+...+.++.|.+.| ++.|-+...+....
T Consensus 13 ~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 13 ESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 3456677887888888899999999999987641 1344566677787777 78999887655443
No 372
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=29.05 E-value=3.9e+02 Score=23.34 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHCCCCEEE--cccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFD--TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~D--tA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
.+.++..+.++.+.+.|++.|- ++..+.... ..++.+-...+... +-.+.+....+ ..+.+
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~-----~~~~~~~~i~~~~~----~~~i~~~~~~g----~~~~e---- 124 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDR-----EFMEYVEAMVQIVE----EMGLKTCATLG----LLDPE---- 124 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChH-----HHHHHHHHHHHHHH----hCCCeEEecCC----CCCHH----
Confidence 3456667777777789997532 222222210 01233433332211 12333333222 23333
Q ss_pred HHHHHHHHhCCCccceEEeecCC-------CCChhHHHHHHHHHHHcCccc----EEEecCccHHHHHHHHHHHHhcCC
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAG-------IWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~-------~~~~~~~~~~L~~L~~~G~ir----~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
.-+.|++.|++.+-+-+=..++ ....++.+++++.+++.|.-- -+|+ +.+.+.+.+.+..+...+.
T Consensus 125 -~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~~l~~l~~ 201 (296)
T TIGR00433 125 -QAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLALALANLPP 201 (296)
T ss_pred -HHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHHHHHhCCC
Confidence 3345677787764332111111 124678899999999998522 3677 6677788777777666553
No 373
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=29.05 E-value=4.7e+02 Score=24.25 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=59.6
Q ss_pred EEeecCCC------------CChhHHHHHHHHHHHcCcccEEEec-------CccHHHHHHHHHHHHhcCCCEeEEcccC
Q 024322 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 166 l~lH~p~~------------~~~~~~~~~L~~L~~~G~ir~iGvS-------~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (269)
+.||.|+. ++.++.+++.+.-.+... +.|-+- |-+.++.+++.+..+ +++-.++-++|
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP~ 292 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIPY 292 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEeec
Confidence 56898764 346778888877766544 444432 445677777776643 35559999999
Q ss_pred CccCCCcch----h---hHHHHHHHcCCeEEEcccccCcc
Q 024322 227 SLIYRKPEE----N---GVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 227 n~~~~~~~~----~---~l~~~~~~~gi~via~spl~~G~ 259 (269)
|+......+ . ...+...++||.+....+-+..+
T Consensus 293 Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 293 NPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
Confidence 998754421 1 35566667789998888765443
No 374
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=28.96 E-value=2.3e+02 Score=27.19 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
...+.+...+.+.+.|+.||++ .|-++.-. ...+..-+.+++|+++|++ +...|+ .++++..-+.
T Consensus 46 ~~Rs~~~~~~~I~e~L~wLGI~-~De~y~QS---er~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~~~r~~ 110 (445)
T PRK12558 46 LERSKQEYADAIAEDLKWLGIN-WDRTFRQS---DRFDRYDEAAEKLKAAGRL-YPCYET--PEELELKRKI 110 (445)
T ss_pred cccchHHHHHHHHHHHHHcCCC-CCccccHH---HHHHHHHHHHHHHHHCCCE-EEecCc--hHHHHHHHHH
Confidence 3455678899999999999997 46431111 1234567888999999985 555554 5666655443
No 375
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=28.90 E-value=4.2e+02 Score=23.74 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC---ChhHHHHHHHHHHHc--CcccEEEec----CccHHHHHHHHHH
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW---GNEGFIDGLGDAVEQ--GLVKAVGVS----NYSEKRLRNAYEK 211 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~---~~~~~~~~L~~L~~~--G~ir~iGvS----~~~~~~i~~~~~~ 211 (269)
..+++.+.+++.+.+++.++|.||+=+=+ +... ..+...++|..|+++ ++.-.+-+. ..+.+- ..+++.
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~-~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl~~~g-~~~l~~ 163 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEG-GALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPDG-LNVLEA 163 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccC-CccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCCChhH-HHHHHH
Confidence 35788999999999999999999974443 2221 246678888888887 333333222 122222 134444
Q ss_pred HHhcCCCEeEEcc
Q 024322 212 LKKRGIPLASNQV 224 (269)
Q Consensus 212 ~~~~~~~~~~~q~ 224 (269)
++..|+.++++.+
T Consensus 164 a~~~Gv~~d~VNi 176 (294)
T cd06543 164 AAANGVDLDTVNI 176 (294)
T ss_pred HHHcCCCcceeee
Confidence 5666766655443
No 376
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=28.88 E-value=4.3e+02 Score=23.79 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=42.1
Q ss_pred HHHHHHHHcCcccEEEec--CccH------------HHHHHHHHHHHhcCC-CEeEEcccCCccCCCcchhhHHHHHHHc
Q 024322 181 DGLGDAVEQGLVKAVGVS--NYSE------------KRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDEL 245 (269)
Q Consensus 181 ~~L~~L~~~G~ir~iGvS--~~~~------------~~i~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~l~~~~~~~ 245 (269)
+.+++|++.|. ..|.|| +.++ +.+.+.++.+.+.|+ ++.++-+-..-.+. .+-.++++++++.
T Consensus 105 ~~~~~L~~aGl-~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~-~ei~~~~~~~~~~ 182 (329)
T PRK13361 105 RFAAELADAGL-KRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQND-DEVLDLVEFCRER 182 (329)
T ss_pred HHHHHHHHcCC-CeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCH-HHHHHHHHHHHhc
Confidence 45678888884 445554 3332 445555556666666 44443332111111 1122589999999
Q ss_pred CCeE--EEcccccCc
Q 024322 246 GITL--IAYCPIAQG 258 (269)
Q Consensus 246 gi~v--ia~spl~~G 258 (269)
|+.+ +-+-|++.+
T Consensus 183 gi~~~~ie~mP~g~~ 197 (329)
T PRK13361 183 GLDIAFIEEMPLGEI 197 (329)
T ss_pred CCeEEEEecccCCCc
Confidence 8765 556777654
No 377
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=28.83 E-value=5.4e+02 Score=24.83 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=9.5
Q ss_pred hHHHHHHHcCCeEEEc
Q 024322 237 GVKAACDELGITLIAY 252 (269)
Q Consensus 237 ~l~~~~~~~gi~via~ 252 (269)
.++++|+++++.||.=
T Consensus 223 ~L~~~a~~~~i~lI~D 238 (496)
T PLN02376 223 NLVRFVTRKNIHLVVD 238 (496)
T ss_pred HHHHHHHHcCCEEEEE
Confidence 4566666666666543
No 378
>PRK05406 LamB/YcsF family protein; Provisional
Probab=28.82 E-value=2.8e+02 Score=24.38 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=52.6
Q ss_pred eecccccCCCCCCCCCCCchhhHHHHHHHHHHHH-HCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 024322 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (269)
Q Consensus 52 glG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al-~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~ 130 (269)
+||.|.++.+ ++.-++|..|- ..|+ +.|+ ...+-++++-.. ...|-
T Consensus 13 ~fG~w~~g~D-------------~~lmp~IssANIACG~-------HAGD---------p~~M~~tv~lA~----~~gV~ 59 (246)
T PRK05406 13 SFGAWKMGDD-------------EALLPLVTSANIACGF-------HAGD---------PAVMRRTVRLAK----ENGVA 59 (246)
T ss_pred CCCCCCCCCH-------------HHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCe
Confidence 6788887654 78778887773 4555 6777 777777777654 45777
Q ss_pred EEecCCCC--------CCCCCHHHHHHHHHHHHHHh
Q 024322 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRL 158 (269)
Q Consensus 131 I~tK~~~~--------~~~~~~~~v~~~v~~sL~~L 158 (269)
|...-+.+ ..+.+++.++..+...+..|
T Consensus 60 IGAHPgypD~~gFGRR~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 60 IGAHPGYPDLEGFGRRNMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred EccCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 77776642 34678888888887777666
No 379
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=28.80 E-value=4.7e+02 Score=24.16 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhcCC
Q 024322 204 RLRNAYEKLKKRGI 217 (269)
Q Consensus 204 ~i~~~~~~~~~~~~ 217 (269)
.++++.+.+++.++
T Consensus 164 dl~~I~~la~~~gi 177 (388)
T PRK07811 164 DIAALAELAHDAGA 177 (388)
T ss_pred CHHHHHHHHHHcCC
Confidence 34444444444443
No 380
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=28.78 E-value=1.8e+02 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCCEEEc
Q 024322 75 KAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~Dt 94 (269)
|.....++.|++.|...+++
T Consensus 14 ENTl~af~~A~~~Gad~iE~ 33 (226)
T cd08568 14 ENTLEAFKKAIEYGADGVEL 33 (226)
T ss_pred cchHHHHHHHHHcCcCEEEE
Confidence 78888999999999998774
No 381
>PRK15063 isocitrate lyase; Provisional
Probab=28.75 E-value=3.1e+02 Score=26.15 Aligned_cols=74 Identities=14% Similarity=-0.006 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHH--cCcccEEEec-------CccHHHHHHHHHHHHhcC
Q 024322 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE--QGLVKAVGVS-------NYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 146 ~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~--~G~ir~iGvS-------~~~~~~i~~~~~~~~~~~ 216 (269)
.+..+|++.+.=. ++-|+++++... .+.+++-+..+.+.+ =+++-..|.| +++.++|+.+.+.+.+.|
T Consensus 263 Gld~AI~Ra~AYa--~GAD~iw~Et~~-~d~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~~G 339 (428)
T PRK15063 263 GIEQAIARGLAYA--PYADLIWCETST-PDLEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMG 339 (428)
T ss_pred CHHHHHHHHHHHh--cCCCEEEeCCCC-CCHHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHHHHcC
Confidence 4667777776444 399999998521 123444444444443 3556666755 235677887777666677
Q ss_pred CCEeEE
Q 024322 217 IPLASN 222 (269)
Q Consensus 217 ~~~~~~ 222 (269)
+++.++
T Consensus 340 y~~~~~ 345 (428)
T PRK15063 340 YKFQFI 345 (428)
T ss_pred ceEEEe
Confidence 665553
No 382
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.68 E-value=69 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCC
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~ 100 (269)
+.+...+....+++.|++.||.+..|.-
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 3477888899999999999999999864
No 383
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=28.63 E-value=1.5e+02 Score=26.84 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHhcCCCEeEEcccCCccCC--------C----cchhhHHHHHHHcCCeEEEcc
Q 024322 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR--------K----PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~--------~----~~~~~l~~~~~~~gi~via~s 253 (269)
+.++++++++..++.++|++++.+.+.-... + +...++++.++++|+.++.+.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 6677777777777788888777776321110 1 112369999999999988764
No 384
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=28.61 E-value=3.7e+02 Score=22.87 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCcc--------------------HHHHH
Q 024322 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS--------------------EKRLR 206 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~--------------------~~~i~ 206 (269)
+.+.++..- ++|.|.|++.. +....++.+.++.++=-++-.+++... .+.++
T Consensus 16 l~e~~~~~~-e~G~~~vEl~~-------~~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T TIGR03234 16 FLERFAAAA-QAGFTGVEYLF-------PYDWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVA 87 (254)
T ss_pred HHHHHHHHH-HcCCCEEEecC-------CccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHH
Q ss_pred HHHHHHHhcCCCEeEEcccCCccCCCcchh---------hHHHHHHHcCCeEE
Q 024322 207 NAYEKLKKRGIPLASNQVNYSLIYRKPEEN---------GVKAACDELGITLI 250 (269)
Q Consensus 207 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~---------~l~~~~~~~gi~vi 250 (269)
++++.+...|.+...+.....+.....++. ++.++|++.||.+.
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~ 140 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLL 140 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE
No 385
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.60 E-value=3.6e+02 Score=23.18 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~ 120 (269)
.+.+++.++.+..++.|++.++.+..-.+ +.+.+.+..+..
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~--------a~~~i~~l~~~~ 64 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDF--------AHEVFAELVKYA 64 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCc--------HHHHHHHHHHHH
Confidence 35699999999999999999997653332 366665544433
No 386
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=28.58 E-value=4.7e+02 Score=24.03 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHcCc--cc---EEEecCccHHHHHHHHHHHHhcC
Q 024322 176 NEGFIDGLGDAVEQGL--VK---AVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~--ir---~iGvS~~~~~~i~~~~~~~~~~~ 216 (269)
.+++.++++.+++.|- |. -+|+-+.+.+.+++.++.+...+
T Consensus 138 ~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~ 183 (353)
T PRK05904 138 IQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHK 183 (353)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcC
Confidence 5566777777777663 21 24455556666666665554433
No 387
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=28.40 E-value=4.1e+02 Score=23.38 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=70.4
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHH--HHHHHHHhccCCCCCCcEEEEecCCC----------
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSET--LLGRFIKERKQRDPEVEVTVATKFAA---------- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~--~lG~al~~~~~~~~R~~l~I~tK~~~---------- 137 (269)
+.++.+...+.++..++.|++-+=..-..|.+. .+-..|+ ++-.+.+... .|-.+++.+-...
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~--~ls~~Er~~~~~~~~~~~~---~~~~vi~gv~~~~~~~~i~~a~~ 91 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESP--TLTHEEHEELIRAVVEAVN---GRVPVIAGTGSNSTAEAIELTKF 91 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccc--cCCHHHHHHHHHHHHHHhC---CCCcEEeecCCchHHHHHHHHHH
Confidence 457889999999999999998665433333211 1112232 2222333322 1334444333211
Q ss_pred ------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHH
Q 024322 138 ------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 138 ------------~~--~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 203 (269)
.| ...+.+.+.+-+++..+.. + +.+++.|.|......=..+.+.+|.+-+.|..|=-|+.+..
T Consensus 92 a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~--~-~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~~d~~ 168 (292)
T PRK03170 92 AEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT--D-LPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEATGDLE 168 (292)
T ss_pred HHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC--C-CCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECCCCHH
Confidence 11 2235567777777777654 2 67777787765332222445555544455544444555566
Q ss_pred HHHHHHH
Q 024322 204 RLRNAYE 210 (269)
Q Consensus 204 ~i~~~~~ 210 (269)
.+.++.+
T Consensus 169 ~~~~~~~ 175 (292)
T PRK03170 169 RVSELIE 175 (292)
T ss_pred HHHHHHH
Confidence 6666543
No 388
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.33 E-value=4.2e+02 Score=23.47 Aligned_cols=116 Identities=12% Similarity=0.057 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHH---HhCCCccceEEeecC--CCCChhHHHHHHHHHHHcCcccEEEecCc----cHHHHHHHHHHH
Q 024322 142 LGRQSVLAALKDSLF---RLGLSSVELYQLHWA--GIWGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKL 212 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~---~L~~d~iDll~lH~p--~~~~~~~~~~~L~~L~~~G~ir~iGvS~~----~~~~i~~~~~~~ 212 (269)
.+++.+.+.+.+..+ ..|. .+.+.+-+.. ...+.+.+.+..+.+.+.| +..|.++.- ++.++.++....
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHH
Confidence 455555544444443 3343 4555555522 1345677777778888887 677887753 677777776654
Q ss_pred HhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccccc
Q 024322 213 KKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLL 262 (269)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~ 262 (269)
++. . ++ +.+.+|.-+..----.=.-.+-+.|+..+--+-.+-|.-+|
T Consensus 186 ~~~-~-~~-~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aG 232 (280)
T cd07945 186 VKR-Y-PN-LHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAG 232 (280)
T ss_pred Hhh-C-CC-CeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccccccc
Confidence 431 1 11 12333333321110011233456677777666665554444
No 389
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.33 E-value=3.7e+02 Score=22.73 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhCCCc--cceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEe
Q 024322 144 RQSVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~--iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (269)
...+.+.+++.+++++..+ +++++.... .+.+...+.++.|..++ +..|=+...+...+...++.+.+.++|+.
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~-vDgiii~~~~~~~~~~~i~~~~~~gIpvV 89 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTAS--NDTEQQNAQQDLLINRK-IDALVILPFESAPLTQPVAKAKKAGIFVV 89 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcC-CCEEEEeCCCchhhHHHHHHHHHCCCeEE
Confidence 3456666777777665333 343333221 12333334444454443 45555554444333333333444455433
No 390
>PRK12569 hypothetical protein; Provisional
Probab=28.21 E-value=3e+02 Score=24.14 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=53.3
Q ss_pred eecccccCCCCCCCCCCCchhhHHHHHHHHHHHH-HCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 024322 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (269)
Q Consensus 52 glG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al-~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~ 130 (269)
+||.|.++.. .+++.-++|..|- ..|+ +.|+ ...+-++++-.. ...|-
T Consensus 14 sfG~~~~g~~-----------~D~~lmp~ItsaNIACG~-------HAGD---------p~~M~~tv~lA~----~~~V~ 62 (245)
T PRK12569 14 GFGPWRIGDG-----------VDEALMPLISSANIATGF-------HAGD---------PNIMRRTVELAK----AHGVG 62 (245)
T ss_pred CCCCcCCCCc-----------cHHHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCE
Confidence 6788887651 1278888888873 5555 7777 777888887654 46777
Q ss_pred EEecCCCC--------CCCCCHHHHHHHHHHHHHHh
Q 024322 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRL 158 (269)
Q Consensus 131 I~tK~~~~--------~~~~~~~~v~~~v~~sL~~L 158 (269)
|...-+.+ ....+++.++..+...+..|
T Consensus 63 IGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 63 IGAHPGFRDLVGFGRRHINASPQELVNDVLYQLGAL 98 (245)
T ss_pred eccCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 77776642 24678888888887777666
No 391
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=28.19 E-value=2.5e+02 Score=22.48 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=26.4
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 024322 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL 160 (269)
Q Consensus 127 ~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~ 160 (269)
.+++|..|-+. ...+.+.+++++...|+++++
T Consensus 86 ~DiVviar~~~--~~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 86 GDYVVVARSAA--AKASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CCEEEEEeCCc--ccCCHHHHHHHHHHHHHHhCc
Confidence 47777777764 678899999999999999875
No 392
>PRK09776 putative diguanylate cyclase; Provisional
Probab=28.16 E-value=2e+02 Score=30.19 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CChhHHHHHHHHHHHcCcccEEEecCcc--HHHHHHHHHHHHhc
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKR 215 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~--~~~i~~~~~~~~~~ 215 (269)
....+.+...+.+.|++.++. -+.+.|.-.+. ...+.+.+.++.|++.|- .|.+.+|. ...+..+.+
T Consensus 936 ~l~~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~--~~~lddfg~g~~~~~~l~~----- 1007 (1092)
T PRK09776 936 GLSSPTLLPFLLEQLENSPLP-PRLLHLEITETALLNHAESASRLVQKLRLAGC--RVVLSDFGRGLSSFNYLKA----- 1007 (1092)
T ss_pred HhCCchHHHHHHHHHHhcCCC-HHHeEEEEecHHhhcCHHHHHHHHHHHHHCCc--EEEEcCCCCCchHHHHHHh-----
Confidence 344445667777777777654 34455544333 346778889999999995 56666652 234444433
Q ss_pred CCCEeEEcccCCccCC---Ccch----hhHHHHHHHcCCeEEEcc
Q 024322 216 GIPLASNQVNYSLIYR---KPEE----NGVKAACDELGITLIAYC 253 (269)
Q Consensus 216 ~~~~~~~q~~~n~~~~---~~~~----~~l~~~~~~~gi~via~s 253 (269)
.+++++-+.-+++.. +... ..++..|++.|+.+++-+
T Consensus 1008 -~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaeg 1051 (1092)
T PRK09776 1008 -FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGP 1051 (1092)
T ss_pred -CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEecc
Confidence 367777777555433 1111 247889999999999854
No 393
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=28.15 E-value=3.7e+02 Score=22.76 Aligned_cols=97 Identities=14% Similarity=-0.008 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHCCCC-----EEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 75 KAAKAAFDTSLDNGIT-----FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn-----~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
-.+.-+..+|+-.|++ |+=.++.|| |...-+.+.... +..+-.-+++.+... .+.+....++
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~G----------E~~~~~~~~~~v-~~~~~~~g~tw~~~~--~~~d~~aa~~ 109 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYG----------EEAALEKFGLGV-EFHGMGEGFTWETQD--READIAAAKA 109 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchh----------HHHHHHhhccce-eEEecCCceeCCCcC--cHHHHHHHHH
Confidence 4566677778888876 566676777 444444431100 000111233333211 1123456788
Q ss_pred HHHHHHHHhCCCccceEEeecCCC------CChhHHHHHHH
Q 024322 150 ALKDSLFRLGLSSVELYQLHWAGI------WGNEGFIDGLG 184 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~p~~------~~~~~~~~~L~ 184 (269)
..+.+.+.|.-+..|+++|..... .+.+++...|.
T Consensus 110 ~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 110 GWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 899999999999999999986432 45677666665
No 394
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=28.12 E-value=1.2e+02 Score=25.06 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC-CChhHHHHHHHHHHHcCcccEEEecCc
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~-~~~~~~~~~L~~L~~~G~ir~iGvS~~ 200 (269)
+.+++++|... .-+|++++..-. ...++.++.|+.|..+|++|++-+--|
T Consensus 66 e~~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~ 116 (173)
T PF10171_consen 66 EQSFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLF 116 (173)
T ss_pred HHHHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeE
Confidence 44555555554 356777764433 236788999999999999998765433
No 395
>PRK09248 putative hydrolase; Validated
Probab=28.06 E-value=3.8e+02 Score=22.90 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHCCCCEEEcccccCC--CCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024322 76 AAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 76 ~~~~~l~~Al~~Gvn~~DtA~~Yg~--g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~ 153 (269)
...++++.|.+.|+..+=-++++.. +.. .. +....+-+..++.. .-++++..-+...+.....+.. +.
T Consensus 20 ~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~-~~-~~~~~~~~~~~~~~----~i~il~GiE~~~~~~~~~~~~~----~~ 89 (246)
T PRK09248 20 TLHENAAEAKQKGLKLFAITDHGPDMPGAP-HY-WHFGNLRVLPRKVD----GVGILRGIEANIKNYDGEIDLP----GD 89 (246)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCcCCCC-CH-HHHHHHHHHHHhhc----CCeEEEEEEeccccCCCcccCC----Hh
Confidence 4667899999999998877766421 100 00 00111111111111 3455555555322111112222 22
Q ss_pred HHHHhCCCccceEEeecCCC--CChhHHHHHHHHHHHcCcccEEEecC---ccHHHHHHHHHHHHhcCCCEeEEcccCCc
Q 024322 154 SLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~--~~~~~~~~~L~~L~~~G~ir~iGvS~---~~~~~i~~~~~~~~~~~~~~~~~q~~~n~ 228 (269)
.++ ..||+ ++.+|+... .......+.+.++.+.|.+--++=-. +.. ...++++.+...|. .+|++.+.
T Consensus 90 ~~~--~~D~v-i~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~~~~~-~~~~~~~~~~~~g~---~lEvN~~~ 162 (246)
T PRK09248 90 MLK--KLDIV-IAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNPKYPI-DIEAVVKAAKEHNV---ALEINNSS 162 (246)
T ss_pred Hhh--hCCEE-EEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCCCCcc-cHHHHHHHHHHhCC---EEEEECCC
Confidence 333 23555 556676532 12233445555555778776555221 111 12333333444444 44444333
Q ss_pred cC----CCc-chhhHHHHHHHcCCeEEE
Q 024322 229 IY----RKP-EENGVKAACDELGITLIA 251 (269)
Q Consensus 229 ~~----~~~-~~~~l~~~~~~~gi~via 251 (269)
+. .+. ....+++.|.++|+.++.
T Consensus 163 l~~~~~g~~~~~~~~~~~~~~~g~~~~~ 190 (246)
T PRK09248 163 FGHSRKGSEDNCRAIAALCKKAGVWVAL 190 (246)
T ss_pred CccCCCCCcChHHHHHHHHHHcCCeEEE
Confidence 21 110 112588999999987654
No 396
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=28.04 E-value=1.9e+02 Score=23.29 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=8.4
Q ss_pred hHHHHHHHcCCeEE
Q 024322 237 GVKAACDELGITLI 250 (269)
Q Consensus 237 ~l~~~~~~~gi~vi 250 (269)
.+.+.|+++||.+.
T Consensus 116 ~l~~~a~~~gv~i~ 129 (213)
T PF01261_consen 116 ELAEIAEEYGVRIA 129 (213)
T ss_dssp HHHHHHHHHTSEEE
T ss_pred HHHhhhhhhcceEE
Confidence 36666666676543
No 397
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=27.91 E-value=4e+02 Score=23.01 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-CCCCCCHHHHHHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~-~~~~~~~~~v~~~v~ 152 (269)
..+....+...+..++.+...+-.-| .+ .+-+ +.+.-.. ++-.+.|+... ..-..+.+.++..+.
T Consensus 12 R~Dv~p~l~~~l~~~v~i~e~G~LDg--ls------~~eI-~~~aP~~-----ge~vLvTrL~DG~~V~ls~~~v~~~lq 77 (221)
T PF07302_consen 12 RTDVTPELTEILGEGVEIVEAGALDG--LS------REEI-AALAPEP-----GEYVLVTRLRDGTQVVLSKKKVEPRLQ 77 (221)
T ss_pred CchhHHHHHHHcCCCceEEEeccCCC--CC------HHHH-HHhCCCC-----CCceeEEEeCCCCEEEEEHHHHHHHHH
Confidence 35666778888888888776543323 23 4444 5554332 56677777742 223467899999999
Q ss_pred HHHHHhCCCccceEEeecCCCCC----------hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEE
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWG----------NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~----------~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (269)
+...+|.-+-.|++++-+-...+ ++.++.-+....-.| +.+||-.=..+++....+.+...+.++.+
T Consensus 78 ~~i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~- 154 (221)
T PF07302_consen 78 ACIAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVVV- 154 (221)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeEE-
Confidence 99999987778888886533311 345555555555555 78999888889999777776655433332
Q ss_pred cccCCccCCCcchhhHHHHHH---HcCCeEEEccccc
Q 024322 223 QVNYSLIYRKPEENGVKAACD---ELGITLIAYCPIA 256 (269)
Q Consensus 223 q~~~n~~~~~~~~~~l~~~~~---~~gi~via~spl~ 256 (269)
.-.||+..+.+ ++.+.++ ++|..+|..-.++
T Consensus 155 -a~asPy~~~~~--~l~~Aa~~L~~~gadlIvLDCmG 188 (221)
T PF07302_consen 155 -AAASPYEGDEE--ELAAAARELAEQGADLIVLDCMG 188 (221)
T ss_pred -EEeCCCCCCHH--HHHHHHHHHHhcCCCEEEEECCC
Confidence 34555543333 3555444 4467777665554
No 398
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.90 E-value=3.9e+02 Score=22.95 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHhCCCccceEE--eecCCCCChhHHHHHHHHHHHcCcccEEEecCc------------------cHHHHHHHHHHH
Q 024322 153 DSLFRLGLSSVELYQ--LHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY------------------SEKRLRNAYEKL 212 (269)
Q Consensus 153 ~sL~~L~~d~iDll~--lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~------------------~~~~i~~~~~~~ 212 (269)
+.++++|.++|++.. .|.....-..+-++.|.++.++--++-+++... ..+.+++.++.+
T Consensus 20 ~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 99 (275)
T PRK09856 20 RDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMA 99 (275)
T ss_pred HHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HhcCCCEeEEcccCCccCCCcchh---------hHHHHHHHcCCeEE
Q 024322 213 KKRGIPLASNQVNYSLIYRKPEEN---------GVKAACDELGITLI 250 (269)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~---------~l~~~~~~~gi~vi 250 (269)
...|.+..++-.-........++. .+.++|+++||.+.
T Consensus 100 ~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 146 (275)
T PRK09856 100 KEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLI 146 (275)
T ss_pred HHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
No 399
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=27.87 E-value=4.2e+02 Score=23.27 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=65.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEecCCC----------
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE--TLLGRFIKERKQRDPEVEVTVATKFAA---------- 137 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se--~~lG~al~~~~~~~~R~~l~I~tK~~~---------- 137 (269)
+.++.+..++.++..++.|++-|=.+-.-|.+.+ +-.+| +++-.+.+..+ .|-.+++.+-...
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~--Lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~~st~~~i~~a~~ 91 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYS--LTDEERKELLEIVVEAAA---GRVPVIAGVGANSTEEAIELARH 91 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGG--S-HHHHHHHHHHHHHHHT---TSSEEEEEEESSSHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCccccc--CCHHHHHHHHHHHHHHcc---CceEEEecCcchhHHHHHHHHHH
Confidence 4578899999999999999986655433332111 11122 22333333332 1445555544321
Q ss_pred --------------CCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHH
Q 024322 138 --------------LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 138 --------------~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 203 (269)
.-...+.+.+.+-++...+..+ +.+++.+.|......=..+.+.+|.+-..|..|=.|+.+..
T Consensus 92 a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~---~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~~~~~ 168 (289)
T PF00701_consen 92 AQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATD---LPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSSGDLE 168 (289)
T ss_dssp HHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS---SEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESSSBHH
T ss_pred HhhcCceEEEEeccccccchhhHHHHHHHHHHhhcC---CCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCchhHH
Confidence 0122344444444444443322 44444444432222333445566666655655555555555
Q ss_pred HHHHHHH
Q 024322 204 RLRNAYE 210 (269)
Q Consensus 204 ~i~~~~~ 210 (269)
.+.++..
T Consensus 169 ~~~~~~~ 175 (289)
T PF00701_consen 169 RLIQLLR 175 (289)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5555443
No 400
>PRK15005 universal stress protein F; Provisional
Probab=27.79 E-value=2.5e+02 Score=21.17 Aligned_cols=34 Identities=9% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCCcchhhHHHHHHHcCCeEEEcccccCcccccccc
Q 024322 230 YRKPEENGVKAACDELGITLIAYCPIAQGELLLFFL 265 (269)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~~ 265 (269)
...+.+ .++++++++++.+|..+.-. +.+.+.+.
T Consensus 92 ~G~p~~-~I~~~a~~~~~DLIV~Gs~~-~~~~~~ll 125 (144)
T PRK15005 92 EGSPKD-RILELAKKIPADMIIIASHR-PDITTYLL 125 (144)
T ss_pred CCCHHH-HHHHHHHHcCCCEEEEeCCC-CCchheee
Confidence 333433 59999999999999998764 33554443
No 401
>PRK13561 putative diguanylate cyclase; Provisional
Probab=27.76 E-value=1.3e+02 Score=29.79 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHcCcccEEEecCccH--HHHHHHHHHHHhcCCCEeEEcccCCccCCCcch----hhHHHHHHHcCCeE
Q 024322 176 NEGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE----NGVKAACDELGITL 249 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~--~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~----~~l~~~~~~~gi~v 249 (269)
.+.+...++.|++.|- .|++.+|.. ..+..+... ...+++++.+.-+++..-... ..++..|+..|+.+
T Consensus 533 ~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l---~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~v 607 (651)
T PRK13561 533 PHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHM---KSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQV 607 (651)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhc---CCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcE
Confidence 3567778888888885 566666632 333333221 014677777765554332111 24799999999999
Q ss_pred EEccc
Q 024322 250 IAYCP 254 (269)
Q Consensus 250 ia~sp 254 (269)
+|-+.
T Consensus 608 iAegV 612 (651)
T PRK13561 608 IAEGV 612 (651)
T ss_pred EEecC
Confidence 98653
No 402
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=27.74 E-value=2.1e+02 Score=24.65 Aligned_cols=19 Identities=26% Similarity=0.634 Sum_probs=14.4
Q ss_pred HHHHHHHCCCCEEEccccc
Q 024322 80 AFDTSLDNGITFFDTAEVY 98 (269)
Q Consensus 80 ~l~~Al~~Gvn~~DtA~~Y 98 (269)
-|...|+.|||+||-=..+
T Consensus 42 ~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CHHHHHhcCceEEEEEeee
Confidence 4678899999999964333
No 403
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=27.73 E-value=6.7e+02 Score=26.35 Aligned_cols=149 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~s 154 (269)
|.+.+++++|.|.|+..+- +|.. |.-+.----+.. +.+.|..-.++....++.+.|.+..+++
T Consensus 17 EIAIRvFRAa~ELgi~TVA---Iys~---------ED~~S~HR~KAD-----EsY~iG~~~~Pi~aYL~IdeII~iAk~~ 79 (1149)
T COG1038 17 EIAIRVFRAANELGIKTVA---IYSE---------EDRLSLHRFKAD-----ESYLIGEGKGPVEAYLSIDEIIRIAKRS 79 (1149)
T ss_pred hhhHHHHHHHHhcCceEEE---Eeec---------cccchhhhcccc-----ceeeecCCCCchHHhccHHHHHHHHHHc
Q ss_pred HHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHH---HHHHHHHhcCCCEeEEcccCCccCC
Q 024322 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR---NAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 155 L~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~---~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (269)
|.|-|. |..-=.-|-.+.-+++.++| |.+||=+....+.+- .+...+.+.++ |++ +...
T Consensus 80 ----gaDaIh------PGYGfLSEn~efA~~c~eaG-I~FIGP~~e~ld~~GdKv~Ar~~A~~agv-Pvi------pgt~ 141 (1149)
T COG1038 80 ----GADAIH------PGYGFLSENPEFARACAEAG-ITFIGPKPEVLDMLGDKVKARNAAIKAGV-PVI------PGTD 141 (1149)
T ss_pred ----CCCeec------CCcccccCCHHHHHHHHHcC-CEEeCCCHHHHHHhccHHHHHHHHHHcCC-Ccc------CCCC
Q ss_pred Ccchh--hHHHHHHHcCCeEEEcccccCc
Q 024322 232 KPEEN--GVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 232 ~~~~~--~l~~~~~~~gi~via~spl~~G 258 (269)
.+.+. ++.+++++.|-+++.-..+++|
T Consensus 142 ~~~~~~ee~~~fa~~~gyPvmiKA~~GGG 170 (1149)
T COG1038 142 GPIETIEEALEFAEEYGYPVMIKAAAGGG 170 (1149)
T ss_pred CCcccHHHHHHHHHhcCCcEEEEEccCCC
No 404
>PRK09389 (R)-citramalate synthase; Provisional
Probab=27.55 E-value=5.2e+02 Score=25.03 Aligned_cols=26 Identities=4% Similarity=-0.005 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEV 97 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~ 97 (269)
.+.++-.++.+.-.+.||..|+....
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p 46 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSA 46 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45688888999988999999998644
No 405
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=27.42 E-value=4.3e+02 Score=23.28 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=32.5
Q ss_pred CccHHHHHHHHHHHH-hcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcc
Q 024322 199 NYSEKRLRNAYEKLK-KRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 199 ~~~~~~i~~~~~~~~-~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~ 259 (269)
+.+.+.+++++.... .....+.++...+|+--...+..++.++|+++|+-++.=...+-|.
T Consensus 114 ~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~ 175 (349)
T cd06454 114 HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGV 175 (349)
T ss_pred CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccc
Confidence 446667777655321 0112344444444442222223358888888888888665554343
No 406
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=27.26 E-value=3.9e+02 Score=24.52 Aligned_cols=88 Identities=9% Similarity=0.070 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+.+++.+.++.+.+.|+..+-.--.||- ...+.+.+++.++
T Consensus 133 ~~~~~~~ai~~l~~~g~~~v~~dli~Gl---------------------------------------Pgqt~e~~~~~l~ 173 (374)
T PRK05799 133 TFEEFLENYKLARKLGFNNINVDLMFGL---------------------------------------PNQTLEDWKETLE 173 (374)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEE-----------------eecCCCCChhHHHHHHHHHHHcCcccEEEecCc
Q 024322 153 DSLFRLGLSSVELYQ-----------------LHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 153 ~sL~~L~~d~iDll~-----------------lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~ 200 (269)
...+ ++.+++.++. +..|+.....+.+....+.-.+.=-..+++|||
T Consensus 174 ~~~~-l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~f 237 (374)
T PRK05799 174 KVVE-LNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNF 237 (374)
T ss_pred HHHh-cCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeee
No 407
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=27.10 E-value=70 Score=30.28 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=28.7
Q ss_pred CcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCC--EEEcccc
Q 024322 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEV 97 (269)
Q Consensus 45 g~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn--~~DtA~~ 97 (269)
|+...+|.||.-.+|.. .|...+ .+.-.+.+++++...+++|++ |+||+-.
T Consensus 79 g~~~~~iiLGGDHLGP~-~w~~lp-aeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ 131 (424)
T PF08013_consen 79 GFPRDRIILGGDHLGPN-PWQHLP-AEEAMAKAKELIRAYVEAGFTKIHLDCSMD 131 (424)
T ss_dssp T--GGGEEEEEEEESSC-CCTTSB-HHHHHHHHHHHHHHHHCTT--EEEE---C-
T ss_pred CCchhhEEecCCCCCcc-cccCCC-HHHHHHHHHHHHHHHHHcCCceEeecCCCC
Confidence 45566789998877664 343221 112245678899999999999 8898643
No 408
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=27.04 E-value=83 Score=26.28 Aligned_cols=67 Identities=18% Similarity=0.026 Sum_probs=38.9
Q ss_pred HHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecC-ccHHHHHHHHHHHHhcCCCEeEEcccCCc
Q 024322 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (269)
Q Consensus 154 sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~-~~~~~i~~~~~~~~~~~~~~~~~q~~~n~ 228 (269)
.+..++.||+=+.+ +|... ..=..+...+|.+.-..+.+||.- -+.+.+.+.++. ..++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~-R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-----~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSP-RYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-----LGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCT-TB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-----CTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCC-CccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-----cCCCEEEECCCC
Confidence 45678888888753 34321 112233444555444445899874 477777777665 679999987654
No 409
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.04 E-value=3.8e+02 Score=25.27 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=24.1
Q ss_pred CCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcccc
Q 024322 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELL 261 (269)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~ 261 (269)
.+..++..+=||...-.+-..+.+.|+++|+-++.=..++.+.+-
T Consensus 150 tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q 194 (396)
T COG0626 150 TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ 194 (396)
T ss_pred ceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc
Confidence 345555555555554444334556666666555555555555544
No 410
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.97 E-value=5.3e+02 Score=24.77 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=67.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH---HHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA---ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDA 186 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~---~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L 186 (269)
.+-+.+.|.+...++ .+.+-|+--- ..+++..+.. .+-..|++||+..-|-.+++-|. ..+++..+-.|
T Consensus 27 d~~l~d~L~~~A~~~-pdriAv~d~~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN---~~ef~~~~FAL 98 (542)
T COG1021 27 DRTLTDILTDHAARY-PDRIAVIDGE----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPN---VAEFYITFFAL 98 (542)
T ss_pred CCcHHHHHHHHHhhc-CCceEEecCc----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCc---hHHHHHHHHHH
Confidence 556777776654332 2555554432 3356555544 45567899999999999999875 47888899999
Q ss_pred HHcCcccEEEecCccHHHHHHHHHHH
Q 024322 187 VEQGLVKAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 187 ~~~G~ir~iGvS~~~~~~i~~~~~~~ 212 (269)
.+.|.+--+-+-.|...+|..+.+.+
T Consensus 99 lrlGv~PVlALpsHr~~Ei~~f~~~~ 124 (542)
T COG1021 99 LRLGVAPVLALPSHRASELGAFASQI 124 (542)
T ss_pred HHcCcchhhccchhhHHHHHHHHHhh
Confidence 99999888888888777777776653
No 411
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=26.95 E-value=88 Score=26.72 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=23.5
Q ss_pred ccceEEeecCCCCChhHHHHHHHHHHHc---CcccEEEecCc
Q 024322 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQ---GLVKAVGVSNY 200 (269)
Q Consensus 162 ~iDll~lH~p~~~~~~~~~~~L~~L~~~---G~ir~iGvS~~ 200 (269)
.+|++|||.+.. .+.+++|+++ ..+|.|.++.-
T Consensus 75 ~ld~VQlHG~e~------~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 75 GLDAVQLHGDED------PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred CCCEEEECCCCC------HHHHHHHHhhcCCceEEEEEeCCc
Confidence 489999998743 4444555554 58999999874
No 412
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=26.95 E-value=2.6e+02 Score=27.92 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceE---EeecCCCCChhHHHHHHHHHHHc-Cccc---------EEEecCccHHHHHHHHHHHHh
Q 024322 148 LAALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQ-GLVK---------AVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll---~lH~p~~~~~~~~~~~L~~L~~~-G~ir---------~iGvS~~~~~~i~~~~~~~~~ 214 (269)
+-.+-..|.+.|++.|++. .++..-..-.++-|+.|..+++. ..++ .+|.+++.-+.++...+.+..
T Consensus 28 ~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~ 107 (592)
T PRK09282 28 MLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAE 107 (592)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHH
Q ss_pred cCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024322 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
.|+...-+-...|-...-.. .+++++++|..+.+.
T Consensus 108 ~Gvd~irif~~lnd~~n~~~---~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 108 NGIDIFRIFDALNDVRNMEV---AIKAAKKAGAHVQGT 142 (592)
T ss_pred CCCCEEEEEEecChHHHHHH---HHHHHHHcCCEEEEE
No 413
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=26.88 E-value=5.8e+02 Score=24.55 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHH----HHHhC-CCccceEEeecCCCCChhHHHHHHHHHHHc-CcccEEEecCccHHHHHHHHHHHHh
Q 024322 141 RLGRQSVLAALKDS----LFRLG-LSSVELYQLHWAGIWGNEGFIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 141 ~~~~~~v~~~v~~s----L~~L~-~d~iDll~lH~p~~~~~~~~~~~L~~L~~~-G~ir~iGvS~~~~~~i~~~~~~~~~ 214 (269)
..+.+.+++.++.. ..+.| .=..|++-|+.... ..+.+...++.+++. +. -+.+.+++++.++++++...
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~-dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleaga- 176 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG-DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVA- 176 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC-CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcC-
Confidence 35556666666555 12333 22477777877543 455667777777764 43 37778899999999987532
Q ss_pred cCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024322 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~sp 254 (269)
+.++.++-... +..+ .+.+.|+++|..++...+
T Consensus 177 -d~~plI~Sat~-----dN~~-~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 177 -DRKPLLYAATK-----ENYE-EMAELAKEYNCPLVVKAP 209 (450)
T ss_pred -CCCceEEecCc-----chHH-HHHHHHHHcCCcEEEEch
Confidence 12344433221 1111 478888888888888664
No 414
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.87 E-value=5e+02 Score=23.81 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=53.1
Q ss_pred ChhHHHHHHHHHHHcCc---ccEEEec--CccHHHHHHHHHHHHhcCCCEeEEcccCCccCCC---cchh---hHHHHH-
Q 024322 175 GNEGFIDGLGDAVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK---PEEN---GVKAAC- 242 (269)
Q Consensus 175 ~~~~~~~~L~~L~~~G~---ir~iGvS--~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~---~~~~---~l~~~~- 242 (269)
+.+++++++.++.+.++ ++++=+. |-+.+.++++.+.++ +.+..++-++||+...+ +... ...+..
T Consensus 229 ~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk--~l~~~vnlI~~N~~~~~~~~p~~~~i~~f~~~l~ 306 (336)
T PRK14470 229 PLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA--GIPVRLNPIAVNDATGRYRPPDEDEWNAFRDALA 306 (336)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHh--cCCCeEEEeccCCCCCCccCCCHHHHHHHHHHHH
Confidence 46788899988887754 2333333 346788888888765 34568888999985431 1111 244555
Q ss_pred -HHcCCeEEEcccccCcc
Q 024322 243 -DELGITLIAYCPIAQGE 259 (269)
Q Consensus 243 -~~~gi~via~spl~~G~ 259 (269)
+++|+.+......+.-+
T Consensus 307 ~~~~g~~~~~R~~~G~di 324 (336)
T PRK14470 307 RELPGTPVVRRYSGGQDE 324 (336)
T ss_pred HccCCeEEEEECCCCCCh
Confidence 35689988887765443
No 415
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.73 E-value=3.7e+02 Score=22.31 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHH
Q 024322 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (269)
Q Consensus 109 se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~ 188 (269)
.|+..-.+|++..+ .-|++|.--+|+ ..+....+++.+++.|+. +..=+..+|.-... ..++++++
T Consensus 86 le~i~~~al~rA~~---~aDvIIIDEIGp--MElks~~f~~~ve~vl~~---~kpliatlHrrsr~------P~v~~ik~ 151 (179)
T COG1618 86 LEEIAIPALRRALE---EADVIIIDEIGP--MELKSKKFREAVEEVLKS---GKPLIATLHRRSRH------PLVQRIKK 151 (179)
T ss_pred HHHHhHHHHHHHhh---cCCEEEEecccc--hhhccHHHHHHHHHHhcC---CCcEEEEEecccCC------hHHHHhhh
Confidence 36677777776652 249999999997 788888899999988866 44556778865432 24667888
Q ss_pred cCcccE-EEecCccHHHHHHHHH
Q 024322 189 QGLVKA-VGVSNYSEKRLRNAYE 210 (269)
Q Consensus 189 ~G~ir~-iGvS~~~~~~i~~~~~ 210 (269)
.|.+.- +-..|.+ ..+.++++
T Consensus 152 ~~~v~v~lt~~NR~-~i~~~Il~ 173 (179)
T COG1618 152 LGGVYVFLTPENRN-RILNEILS 173 (179)
T ss_pred cCCEEEEEccchhh-HHHHHHHH
Confidence 888877 4444544 33444443
No 416
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=26.64 E-value=4.8e+02 Score=23.57 Aligned_cols=130 Identities=13% Similarity=0.190 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEc---ccc---cCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHH
Q 024322 74 MKAAKAAFDTSLDNGITFFDT---AEV---YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (269)
Q Consensus 74 ~e~~~~~l~~Al~~Gvn~~Dt---A~~---Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v 147 (269)
+++..+..+.+.+.|+..||. ++. ...|.-..+..--+.+.+.++..... -++-|+.|+.. .++.+.+..
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a---~d~pv~vKiR~-G~~~~~~~~ 151 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA---VDVPVTLKIRT-GWAPEHRNC 151 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh---cCCceEEEEEc-cccCCcchH
Confidence 466666777777899999994 121 01110000111133444444433211 13345566531 022221112
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC---CChhHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHH
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~ 211 (269)
. .+-+.+++.|. |.+.+|.-.. .....-|+.+.++++.=.|.-||..+. +.+.++++++.
T Consensus 152 ~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 152 V-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred H-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhc
Confidence 2 22234566674 6667886432 112234788888888777888888876 77888888754
No 417
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.59 E-value=4.8e+02 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=12.1
Q ss_pred HHHHHHHcCCeEEEcccccCc
Q 024322 238 VKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 238 l~~~~~~~gi~via~spl~~G 258 (269)
.++.+++.||.+...+++..|
T Consensus 219 ai~~L~~~Gi~v~~q~vLl~g 239 (321)
T TIGR03822 219 ACARLIDAGIPMVSQSVLLRG 239 (321)
T ss_pred HHHHHHHcCCEEEEEeeEeCC
Confidence 455555566666665555554
No 418
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.43 E-value=1.7e+02 Score=26.45 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHhcCCCEeEEcccCCccC------------CC----cchhhHHHHHHHcCCeEEEcc
Q 024322 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIY------------RK----PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~------------~~----~~~~~l~~~~~~~gi~via~s 253 (269)
+.+++.++++..++.++|++++.+...-.. -+ ++..++++..+++|+.++.+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v 90 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVIT 90 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEE
Confidence 567778887777888888888776532211 01 111369999999999998864
No 419
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=26.36 E-value=2.8e+02 Score=20.71 Aligned_cols=74 Identities=15% Similarity=0.011 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHHCCCCE-EEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~-~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
+.+.++..+-|+..+..|.+. ++.|+.-.. |...+-..|.... ...+++.+..
T Consensus 10 ~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~~-------------------------r~~~W~mW~~p~~-~~~~~~~Vl~ 63 (99)
T PF00101_consen 10 PLTDEEIAKQVRYLLSQGWIIGIEHADPRRF-------------------------RTSYWQMWKLPMF-GCTDPAQVLA 63 (99)
T ss_dssp ---HHHHHHHHHHHHHTT-EEEEEEESCGGS-------------------------TSSS-EEESSEBT-TBSSHHHHHH
T ss_pred CCCHHHHHHHHHhhhhcCceeeEEecCCCCC-------------------------CCCEeecCCCCCc-CCCCHHHHHH
Confidence 356789999999999999984 654433221 4555655565431 3567889999
Q ss_pred HHHHHHHHhCCCccceEEeec
Q 024322 150 ALKDSLFRLGLSSVELYQLHW 170 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~ 170 (269)
.|++.++.-.-+||=|+=+..
T Consensus 64 el~~c~~~~p~~yVRlig~D~ 84 (99)
T PF00101_consen 64 ELEACLAEHPGEYVRLIGFDN 84 (99)
T ss_dssp HHHHHHHHSTTSEEEEEEEET
T ss_pred HHHHHHHhCCCceEEEEEEcC
Confidence 999999998888887765553
No 420
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=26.34 E-value=5.2e+02 Score=23.86 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=6.3
Q ss_pred HHHHHHHHHhcCCC
Q 024322 205 LRNAYEKLKKRGIP 218 (269)
Q Consensus 205 i~~~~~~~~~~~~~ 218 (269)
++++.+.+++.+..
T Consensus 155 l~~I~~la~~~g~~ 168 (382)
T TIGR02080 155 IAKICHLAKAVGAV 168 (382)
T ss_pred HHHHHHHHHHcCCE
Confidence 34444445555543
No 421
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=26.34 E-value=2.9e+02 Score=24.93 Aligned_cols=86 Identities=7% Similarity=-0.038 Sum_probs=55.5
Q ss_pred cceEEeecCCCCChhHHHHHHHHHHHcC-cccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHH
Q 024322 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDll~lH~p~~~~~~~~~~~L~~L~~~G-~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (269)
.++.++..|-. .+-++.+.+|++.- .--+.|=|-++...+..+++. .-.+++|+..+..-.- . .+++.
T Consensus 192 ~~i~~iEqP~~---~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~-----~a~d~v~ik~~k~GGi-~--~~~~~ 260 (320)
T PRK02714 192 GKIEFIEQPLP---PDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQ-----GWRGIFVIKPAIAGSP-S--RLRQF 260 (320)
T ss_pred CCccEEECCCC---cccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHc-----CCCCEEEEcchhcCCH-H--HHHHH
Confidence 46666666643 22356677776653 334666777787887777653 2466677766654321 1 47899
Q ss_pred HHHcCCeEEEcccccCcc
Q 024322 242 CDELGITLIAYCPIAQGE 259 (269)
Q Consensus 242 ~~~~gi~via~spl~~G~ 259 (269)
|+.+||.++..+.+..|+
T Consensus 261 a~~~gi~~~~~~~~es~i 278 (320)
T PRK02714 261 CQQHPLDAVFSSVFETAI 278 (320)
T ss_pred HHHhCCCEEEEechhhHH
Confidence 999999999876655443
No 422
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=26.34 E-value=5.2e+02 Score=23.91 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCCCEeEEcc
Q 024322 205 LRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 205 i~~~~~~~~~~~~~~~~~q~ 224 (269)
++++.+.+++.+..+.+-..
T Consensus 156 i~~I~~ia~~~g~~vivDea 175 (386)
T PRK08045 156 IAKICHLAREAGAVSVVDNT 175 (386)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 44455555555554444443
No 423
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=26.30 E-value=4e+02 Score=23.49 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 024322 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (269)
Q Consensus 78 ~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~ 157 (269)
.+.++.|++.|=..|=.+.+||| =++.|.++... .++.+..|- .....+.+-+++..++
T Consensus 90 ~e~l~~a~~~gkgvIllt~H~Gn---------wE~~~~~~~~~------~~~~~v~r~------~~n~~~~~~~~~~R~~ 148 (289)
T PRK08905 90 WEHVEAALAEGRGILFLTPHLGC---------FEVTARYIAQR------FPLTAMFRP------PRKAALRPLMEAGRAR 148 (289)
T ss_pred HHHHHHHHhcCCCEEEEecccch---------HHHHHHHHHhc------CCceEEEEC------CCCHHHHHHHHHHhcc
Confidence 35677888888888888889998 77778887753 244555443 2333455555666666
Q ss_pred hCCCc
Q 024322 158 LGLSS 162 (269)
Q Consensus 158 L~~d~ 162 (269)
.|...
T Consensus 149 ~g~~~ 153 (289)
T PRK08905 149 GNMRT 153 (289)
T ss_pred cCCce
Confidence 65443
No 424
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.19 E-value=5.3e+02 Score=23.91 Aligned_cols=25 Identities=8% Similarity=-0.082 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEccc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~ 96 (269)
.+.++..++++.-.+.||..++.+.
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G~ 47 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGF 47 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 4457888888888899999999763
No 425
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=26.15 E-value=1.4e+02 Score=22.61 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCC--hhHHHHHHHHHHHcC
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAVEQG 190 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~~~--~~~~~~~L~~L~~~G 190 (269)
+..+++.|+.+.....|.+++..++... ..+....++.|.+.|
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 3444555555544556666666665522 334555555555543
No 426
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=26.13 E-value=4.1e+02 Score=24.39 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEee-cCCC------------CC-hh----HHHHHHHHHHHcCcccEEEecCcc
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI------------WG-NE----GFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH-~p~~------------~~-~~----~~~~~L~~L~~~G~ir~iGvS~~~ 201 (269)
...+.+.+++.++.. .+|+.+++.++.+. .|+. .+ .+ ..-.+++.|.+.|. ..+++++|.
T Consensus 162 Pgqt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 162 PGQTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCCCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 456788888888765 66899998887553 2321 01 11 12235677777786 568999885
Q ss_pred H
Q 024322 202 E 202 (269)
Q Consensus 202 ~ 202 (269)
.
T Consensus 240 ~ 240 (377)
T PRK08599 240 K 240 (377)
T ss_pred C
Confidence 3
No 427
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=26.09 E-value=5.1e+02 Score=23.64 Aligned_cols=137 Identities=11% Similarity=0.072 Sum_probs=69.8
Q ss_pred HHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 024322 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (269)
Q Consensus 78 ~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~ 157 (269)
.+.+..+++.|. .||.|.. .+.+-++|++... .+.+++++ . -..++.-++..
T Consensus 14 ~~~~~~~l~~~~-------~~g~~~~------~~~~e~~la~~~g---~~~~v~~~-s-----------gt~al~~~l~~ 65 (375)
T PRK11706 14 LDYIQQAMSSGK-------LCGDGGF------TRRCQQWLEQRFG---SAKVLLTP-S-----------CTAALEMAALL 65 (375)
T ss_pred HHHHHHHHHcCC-------ccCCCHH------HHHHHHHHHHHhC---CCeEEEEC-C-----------HHHHHHHHHHH
Confidence 556777788774 3554432 4556666665532 23444433 3 25556666666
Q ss_pred hCCCccceEEeecCCCCChhHHHHHHHHHHHc-CcccEEEec----CccHHHHHHHHHHHHhcCCCEeEEcccCCccCCC
Q 024322 158 LGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ-GLVKAVGVS----NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 158 L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~-G~ir~iGvS----~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (269)
+++..=|-+++-.+... .+..++ ... .++..+-+. +.+.+.+++++.. ..+..+. .|+.-..
T Consensus 66 ~~~~~Gd~Viv~~~t~~---~~~~~~---~~~G~~~v~~d~d~~~~~~d~~~le~~i~~----~tk~i~~---~~~~G~~ 132 (375)
T PRK11706 66 LDIQPGDEVIMPSYTFV---STANAF---VLRGAKIVFVDIRPDTMNIDETLIEAAITP----KTRAIVP---VHYAGVA 132 (375)
T ss_pred hCCCCCCEEEECCCCcH---HHHHHH---HHcCCEEEEEecCCCcCCcCHHHHHHhcCC----CCeEEEE---eCCCCCc
Confidence 66555566666655432 222222 222 345555543 2356666665421 1222221 1222222
Q ss_pred cchhhHHHHHHHcCCeEEEcccc
Q 024322 233 PEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~spl 255 (269)
.+..++.++|+++|+.||-=.+.
T Consensus 133 ~~~~~i~~la~~~~i~vIeD~a~ 155 (375)
T PRK11706 133 CEMDTIMALAKKHNLFVVEDAAQ 155 (375)
T ss_pred cCHHHHHHHHHHcCCEEEEECcc
Confidence 22336889999999888754443
No 428
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=26.05 E-value=6.1e+02 Score=24.55 Aligned_cols=120 Identities=10% Similarity=0.092 Sum_probs=65.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHh-CCCccceEEee--cCCCCChhHHHHHHHHHHHcCccc-EEEecCc------------c
Q 024322 138 LPWRLGRQSVLAALKDSLFRL-GLSSVELYQLH--WAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNY------------S 201 (269)
Q Consensus 138 ~~~~~~~~~v~~~v~~sL~~L-~~d~iDll~lH--~p~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~------------~ 201 (269)
.|...+++.+.+-++...+.+ +++.+--+.+- +|+..+ -+.|+.|++.|.-+ +||+=++ +
T Consensus 228 TPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it----~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht 303 (488)
T PRK08207 228 TPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTIT----EEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHT 303 (488)
T ss_pred CccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCC----HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCC
Confidence 345567888888787776665 55555444443 465432 24466677777543 4555443 4
Q ss_pred HHHHHHHHHHHHhcCCCEeEEcccCCccCCCcch-hhHHHHHHHcCCe---EEEcccccCcccc
Q 024322 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGIT---LIAYCPIAQGELL 261 (269)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~l~~~~~~~gi~---via~spl~~G~L~ 261 (269)
.+++.++++.+++.|++.....+.+.+-.+..+. ...++++.+.++. +...++.-+-.|.
T Consensus 304 ~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~ 367 (488)
T PRK08207 304 VEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLT 367 (488)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHH
Confidence 5666677777777776433344455543332221 1356666666654 4444444443333
No 429
>PRK08084 DNA replication initiation factor; Provisional
Probab=26.04 E-value=4.1e+02 Score=22.60 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=32.7
Q ss_pred cceEEeecCCCCC-----hhHHHHHHHHHHHcCcccEEEecCccHHHH
Q 024322 163 VELYQLHWAGIWG-----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 163 iDll~lH~p~~~~-----~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i 205 (269)
.|++.|...+... .++.++.+..+.+.|+++-|..|+..+..+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 5889887765532 345678888999999999999998777664
No 430
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=26.01 E-value=3.4e+02 Score=21.57 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHcCc--cc---EEEecCccHHHHHHHHHHHHhcCC
Q 024322 176 NEGFIDGLGDAVEQGL--VK---AVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~--ir---~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
.+.++++++.+++.|. +. -+|+.+.+.+.+.+.++.+.+.++
T Consensus 135 ~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 181 (216)
T smart00729 135 VEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGP 181 (216)
T ss_pred HHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 5778888888888882 22 233444567777777776665544
No 431
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=25.93 E-value=5.7e+02 Score=24.20 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=8.2
Q ss_pred hHHHHHHHcCCeEEE
Q 024322 237 GVKAACDELGITLIA 251 (269)
Q Consensus 237 ~l~~~~~~~gi~via 251 (269)
+++++|+++++.+|.
T Consensus 224 ~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 224 DILDFVVRKNIHLVS 238 (447)
T ss_pred HHHHHHHHCCCEEEE
Confidence 355555555555554
No 432
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.78 E-value=2e+02 Score=25.57 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHHHhcCCCEeEEcccCC--c-------------cCCC----cchhhHHHHHHHcCCeEEEcc
Q 024322 200 YSEKRLRNAYEKLKKRGIPLASNQVNYS--L-------------IYRK----PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~q~~~n--~-------------~~~~----~~~~~l~~~~~~~gi~via~s 253 (269)
.+.++++++++..++.++|.+++-+... - +.-+ ++-.++++..+++|+.++.+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 4678888888888888999888866422 1 1111 122369999999999998865
No 433
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.69 E-value=4.5e+02 Score=22.85 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=58.0
Q ss_pred HHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC-------CCCCCHHHHHHHH
Q 024322 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAAL 151 (269)
Q Consensus 79 ~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~-------~~~~~~~~v~~~v 151 (269)
++++.|++.|...+........ ...+.+.++++. ..+++..--+.. .+....+.+.+.+
T Consensus 87 ~v~~aaL~~g~~iINdis~~~~---------~~~~~~l~~~~~-----~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T cd00423 87 EVAEAALKAGADIINDVSGGRG---------DPEMAPLAAEYG-----APVVLMHMDGTPQTMQNNPYYADVVDEVVEFL 152 (258)
T ss_pred HHHHHHHHhCCCEEEeCCCCCC---------ChHHHHHHHHcC-----CCEEEECcCCCCcccccCCCcchHHHHHHHHH
Confidence 3678888888777765433221 134456666654 466666533210 0122333344444
Q ss_pred HHHHH---HhCCCccceEEeecCCC--C----ChhHHHHHHHHHHHc-CcccEEEecCcc
Q 024322 152 KDSLF---RLGLSSVELYQLHWAGI--W----GNEGFIDGLGDAVEQ-GLVKAVGVSNYS 201 (269)
Q Consensus 152 ~~sL~---~L~~d~iDll~lH~p~~--~----~~~~~~~~L~~L~~~-G~ir~iGvS~~~ 201 (269)
++.++ +.|++.=|++ +. |.. . ...++++.++.+++- |.=-.+|+||.+
T Consensus 153 ~~~i~~~~~~Gi~~~~Ii-lD-Pg~g~~k~~~~~~~~l~~i~~~~~~~g~Pil~G~Snks 210 (258)
T cd00423 153 EERVEAATEAGIPPEDII-LD-PGIGFGKTEEHNLELLRRLDAFRELPGLPLLLGVSRKS 210 (258)
T ss_pred HHHHHHHHHcCCCHHHEE-Ee-CCCCccCCHHHHHHHHHHHHHHHhcCCCcEEEEeccch
Confidence 44443 4465432322 21 211 1 134678888888887 888899999864
No 434
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.65 E-value=4.3e+02 Score=22.68 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEc
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q 223 (269)
...+.+.+++.++++|.+ ++++ ...........+.++.+...+ +..|=+...+.+.....++.+...++|+..+.
T Consensus 14 ~~~~~~gi~~~a~~~g~~---~~~~-~~~~~~~~~~~~~l~~~~~~~-~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 88 (294)
T cd06316 14 SNAQVRGAKDEFAKLGIE---VVAT-TDAQFDPAKQVADIETTISQK-PDIIISIPVDPVSTAAAYKKVAEAGIKLVFMD 88 (294)
T ss_pred HHHHHHHHHHHHHHcCCE---EEEe-cCCCCCHHHHHHHHHHHHHhC-CCEEEEcCCCchhhhHHHHHHHHcCCcEEEec
Confidence 456788888888888843 3322 222233455667777777654 67666655443333444444555667665543
No 435
>PRK09082 methionine aminotransferase; Validated
Probab=25.65 E-value=5.2e+02 Score=23.58 Aligned_cols=150 Identities=10% Similarity=0.013 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhc-cCCCCCC-cEEEEecCCCCCCCCCHHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER-KQRDPEV-EVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~-~~~~~R~-~l~I~tK~~~~~~~~~~~~v~~~v~ 152 (269)
+...+.+..+++.+.+ .|..... ...-++.+.+.+.+. ......+ ++++++ . ...++.
T Consensus 46 ~~~~~~~~~~~~~~~~------~Y~~~~G--~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~-G-----------~~~al~ 105 (386)
T PRK09082 46 PYLVEALAYAMAAGHN------QYPPMTG--VAALREAIAAKTARLYGRQYDADSEITVTA-G-----------ATEALF 105 (386)
T ss_pred HHHHHHHHHHHHcCCC------CCCCCCC--cHHHHHHHHHHHHHHhCCCCCCCCcEEEeC-C-----------HHHHHH
Confidence 4566778888775532 3543211 111245556665543 2211122 455433 2 133444
Q ss_pred HHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEec--Cc--cHHHHHHHHHHHHhcCCCEeEEcccCCc
Q 024322 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS--NY--SEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (269)
Q Consensus 153 ~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS--~~--~~~~i~~~~~~~~~~~~~~~~~q~~~n~ 228 (269)
..+..+ ++-=|-+++..|.... ....++. ...++..+-+. ++ +.+.+++.+. .+.+..++..+.|+
T Consensus 106 ~~~~~~-~~~gd~Vli~~p~y~~---~~~~~~~--~g~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NP 175 (386)
T PRK09082 106 AAILAL-VRPGDEVIVFDPSYDS---YAPAIEL--AGGRAVRVALQPPDFRVDWQRFAAAIS----PRTRLIILNTPHNP 175 (386)
T ss_pred HHHHHH-cCCCCEEEEeCCCchh---hHHHHHH--cCCEEEEEecCcccccCCHHHHHHhcC----ccceEEEEeCCCCC
Confidence 444443 2334667776664422 2222222 13556666554 22 4455555432 12344444445555
Q ss_pred cCCC---cchhhHHHHHHHcCCeEEEccc
Q 024322 229 IYRK---PEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 229 ~~~~---~~~~~l~~~~~~~gi~via~sp 254 (269)
.-.. .+..+++++|+++++-++.=..
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li~De~ 204 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVLSDEV 204 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEEEehh
Confidence 3321 1223578889998888885443
No 436
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.58 E-value=5.4e+02 Score=23.75 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=90.7
Q ss_pred hhHHHHHHHH---HHHHH-C--CCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCC----CCCcEEEEecCCCCCCC
Q 024322 72 RKMKAAKAAF---DTSLD-N--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD----PEVEVTVATKFAALPWR 141 (269)
Q Consensus 72 ~~~e~~~~~l---~~Al~-~--Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~----~R~~l~I~tK~~~~~~~ 141 (269)
.+.++..+.+ ...++ . |++.++.--.-|.|+.- . ....+-++++...... ....+.|+|-. .
T Consensus 130 lt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPL--l-n~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G----~- 201 (354)
T PRK14460 130 MTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPL--L-NLDEVMRSLRTLNNEKGLNFSPRRITVSTCG----I- 201 (354)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCccc--C-CHHHHHHHHHHHhhhhccCCCCCeEEEECCC----C-
Confidence 3445555555 33342 2 43434444445545330 0 1344556666543110 11357777754 1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC------------CChhHHHHHHHHHHHc-Cc---ccEEEec--CccHH
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEK 203 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~------------~~~~~~~~~L~~L~~~-G~---ir~iGvS--~~~~~ 203 (269)
.+ .++ -|...+...+++ -||.++. .+.+++++++.+..++ |+ |+++=+. |-+.+
T Consensus 202 --~~----~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~e 273 (354)
T PRK14460 202 --EK----GLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLE 273 (354)
T ss_pred --hH----HHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHH
Confidence 22 233 344555544443 5777654 2356778877765443 22 3333333 44667
Q ss_pred HHHHHHHHHHhcCCCEeEEcccCCccCCCc----chh---hHHHHHHHcCCeEEEcccccC
Q 024322 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EEN---GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~~---~l~~~~~~~gi~via~spl~~ 257 (269)
.++++.+.++.. +..++-++||+....+ ... .+.+..+++|+.+......+.
T Consensus 274 d~~~l~~~l~~~--~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 274 HARELVRLLSRT--KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred HHHHHHHHHhcC--CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 888888876643 4567888999865322 111 356777888999998887754
No 437
>PRK07094 biotin synthase; Provisional
Probab=25.55 E-value=4.8e+02 Score=23.23 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.+.++..+.++.+.+.|++.|--. .|..+. ...+.+-+.++.... +.++.+..-.+ ..+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~----gG~~~~--~~~~~l~~l~~~i~~---~~~l~i~~~~g----~~~~e~l---- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQ----SGEDPY--YTDEKIADIIKEIKK---ELDVAITLSLG----ERSYEEY---- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe----cCCCCC--CCHHHHHHHHHHHHc---cCCceEEEecC----CCCHHHH----
Confidence 367888888999999999876432 110000 013445555554431 12343332222 2233322
Q ss_pred HHHHHHhCCCccceEEeecCC---------CCChhHHHHHHHHHHHcCccc----EEEecCccHHHHHHHHHHHHhcCC
Q 024322 152 KDSLFRLGLSSVELYQLHWAG---------IWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~---------~~~~~~~~~~L~~L~~~G~ir----~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
+.|++.|++.+-+ -+...+ ....++.+++++.+++.|.-- -+|+.+.+.+.+.+.+..+++.+.
T Consensus 133 -~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 133 -KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDL 209 (323)
T ss_pred -HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 3456667654431 111110 134678999999999999622 356667788888888888776654
No 438
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=25.51 E-value=4.1e+02 Score=22.33 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=54.3
Q ss_pred HHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC-CCCCCH-------HHHHHHH
Q 024322 80 AFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGR-------QSVLAAL 151 (269)
Q Consensus 80 ~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~-~~~~~~-------~~v~~~v 151 (269)
+++.|++.|.+.+--....-. ...+.+.++++. ..+++..--+.. ....+. +.+.+-+
T Consensus 84 v~~~aL~~g~~~ind~~~~~~---------~~~~~~l~a~~~-----~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (210)
T PF00809_consen 84 VAEAALKAGADIINDISGFED---------DPEMLPLAAEYG-----APVVLMHSDGNPKGMPETADYRLDIAEEIIEFL 149 (210)
T ss_dssp HHHHHHHHTSSEEEETTTTSS---------STTHHHHHHHHT-----SEEEEESESSETTTTTSSHHHSHSHHHHHHHHH
T ss_pred HHHHHHHcCcceEEecccccc---------cchhhhhhhcCC-----CEEEEEecccccccccccchhhhhHHHHHHHHH
Confidence 566777778886553333221 233455566654 456665555211 011112 2233333
Q ss_pred HH---HHHHhCCCccceEEeecCCC-C---ChhHHHHHHHHHHHc-CcccEEEecC
Q 024322 152 KD---SLFRLGLSSVELYQLHWAGI-W---GNEGFIDGLGDAVEQ-GLVKAVGVSN 199 (269)
Q Consensus 152 ~~---sL~~L~~d~iDll~lH~p~~-~---~~~~~~~~L~~L~~~-G~ir~iGvS~ 199 (269)
++ .|.+.|++.=|+++==-..+ . ...++++.++.+++. |....+|.|.
T Consensus 150 ~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~~~~~~p~l~~~sr 205 (210)
T PF00809_consen 150 EERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELKELFGYPILVGGSR 205 (210)
T ss_dssp HHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHTTSSSEBEEEETT
T ss_pred HHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 32 23337886544433111111 1 145778888888889 9999999886
No 439
>PRK08508 biotin synthase; Provisional
Probab=25.47 E-value=4.7e+02 Score=23.03 Aligned_cols=116 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec-CCCCChhHHHHHHHHHHHcC-cccEEEecCc-cHHHHHHHHHH-HHhcCC
Q 024322 142 LGRQSVLAALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQG-LVKAVGVSNY-SEKRLRNAYEK-LKKRGI 217 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d~iDll~lH~-p~~~~~~~~~~~L~~L~~~G-~ir~iGvS~~-~~~~i~~~~~~-~~~~~~ 217 (269)
.+++.|.+.+++..++ |...+-++.--. +.....+-+.+.++.+++++ .+.-....+. +.+.++++.+. +....+
T Consensus 40 ~s~eeI~~~a~~a~~~-g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKAN-GALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcc
Q ss_pred CEeEEcccCCccCCCcchhh---HHHHHHHcCCeEEEcccccCc
Q 024322 218 PLASNQVNYSLIYRKPEENG---VKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~---l~~~~~~~gi~via~spl~~G 258 (269)
.+....-.|.-......-.+ .++.+++.|+.+.+-..++-|
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlG 162 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLG 162 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecC
No 440
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=25.40 E-value=1.4e+02 Score=22.36 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=49.2
Q ss_pred CCHHH---HHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 142 LGRQS---VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 142 ~~~~~---v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
.+++. +-...+..+...++-++|+=.+-+.|.....-..+.++..|++|+ ++-+++ -++++..+.+.
T Consensus 20 L~r~tl~~lw~~r~~~~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~--~~~L~~-~p~~L~tLa~L 89 (99)
T COG3113 20 LDRDTLLPLWSQREAQLKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN--AVTLTG-VPEQLRTLAEL 89 (99)
T ss_pred ccHHHHHHHHHHHHHHccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCC--eeEEec-CcHHHHHHHHH
Confidence 44444 445556666777788999988888887777888899999999998 555655 45677777654
No 441
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=25.39 E-value=88 Score=20.81 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
.++++++.+.+.|.....+ .+.+-+..- ..+.+.|++.||.++.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i-TDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI-TDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE-eeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 3445555566666543332 222211111 1367788888877764
No 442
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=25.33 E-value=6.5e+02 Score=24.60 Aligned_cols=164 Identities=12% Similarity=0.072 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCC-CCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC--CCCCCCHHHHHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSR-ASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA--LPWRLGRQSVLAAL 151 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g-~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~--~~~~~~~~~v~~~v 151 (269)
++...-+..+...|..+++-=-.|-.. .. +..+.+.++.. +..++++-+... -.+..+.+.-.+-+
T Consensus 35 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~------~~~~~~~~~~~-----~~plI~T~R~~~eGG~~~~~~~~~~~ll 103 (529)
T PLN02520 35 DKMLIEMAKAKELGADLVEIRLDFLKNFNP------REDLKTLIKQS-----PLPTLVTYRPKWEGGQYEGDENKRQDAL 103 (529)
T ss_pred HHHHHHHHHhhhcCCCEEEEEeccccccCC------HHHHHHHHhcC-----CCcEEEEeccHHHCCCCCCCHHHHHHHH
Confidence 555555666666788877643333221 11 34444444422 245666655421 11233433322333
Q ss_pred HHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCcc------HHHHHHHHHHHHhcCCCEeEEccc
Q 024322 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~------~~~i~~~~~~~~~~~~~~~~~q~~ 225 (269)
+. .-+++.||||+=+- + .+...+.+..++ .+.++-|. |.|+ .+++.+.++.+...| .+++-+-
T Consensus 104 ~~-~~~~~~d~iDiEl~-~-----~~~~~~~~~~~~-~~~~~vI~-S~H~f~~tP~~~el~~~~~~~~~~g--aDi~Kia 172 (529)
T PLN02520 104 RL-AMELGADYVDVELK-V-----AHEFINSISGKK-PEKCKVIV-SSHNYENTPSVEELGNLVARIQATG--ADIVKIA 172 (529)
T ss_pred HH-HHHhCCCEEEEEcC-C-----chhHHHHHHhhh-hcCCEEEE-EecCCCCCCCHHHHHHHHHHHHHhC--CCEEEEe
Confidence 33 33567999997321 1 123344444443 45666665 5442 355555555444433 3444443
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEEcccccCcccc
Q 024322 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGELL 261 (269)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~ 261 (269)
..+-+..... .++....+.+..+|+++-=..|.+|
T Consensus 173 ~~~~~~~D~~-~ll~~~~~~~~p~i~~~MG~~G~~s 207 (529)
T PLN02520 173 TTALDITDVA-RMFQITVHSQVPTIGLVMGERGLIS 207 (529)
T ss_pred cCCCCHHHHH-HHHHHHhhcCCCEEEEecCCCCchh
Confidence 3333221111 3566656667777754443334433
No 443
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=25.32 E-value=2e+02 Score=23.86 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCC------CCCHHHHHHHHHHHHH
Q 024322 83 TSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW------RLGRQSVLAALKDSLF 156 (269)
Q Consensus 83 ~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~------~~~~~~v~~~v~~sL~ 156 (269)
.-++.-+-.+|+......-.- ++.+-.+++.....-|.-.|++++-+..... ....+..++.+++..+
T Consensus 56 a~~~a~~~~ld~~~N~~~~~~------~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~ 129 (178)
T PF14606_consen 56 AEIDADLIVLDCGPNMSPEEF------RERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVE 129 (178)
T ss_dssp HHS--SEEEEEESHHCCTTTH------HHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEeecCCCHHHH------HHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHH
Confidence 344777778888777433221 4555555655544335678999987765322 2344667777777777
Q ss_pred HhC-CCccceEEeecCC
Q 024322 157 RLG-LSSVELYQLHWAG 172 (269)
Q Consensus 157 ~L~-~d~iDll~lH~p~ 172 (269)
+|. -..=+|++++..+
T Consensus 130 ~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 130 QLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp HHHHTT-TTEEEE-HHH
T ss_pred HHHHcCCCcEEEeCchh
Confidence 772 2346778887654
No 444
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.29 E-value=5.6e+02 Score=26.02 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=62.4
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEEcc--cccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEe--cCCCCCCCCC--
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFDTA--EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--KFAALPWRLG-- 143 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~DtA--~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~t--K~~~~~~~~~-- 143 (269)
.+.|.++.++.+....+.|+.-|-.+ ..|.|... |..+++.+++.. .++-|++ ++++....+.
T Consensus 134 ~~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~H------E~~v~eiire~~-----~~i~V~~shev~p~~~~~eR~ 202 (674)
T COG0145 134 KPLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEH------ELRVAEIIREIG-----PDIPVSLSHEVSPEIGEYERA 202 (674)
T ss_pred CcCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHH------HHHHHHHHHHhc-----CCceEEechhcchhcCcccch
Confidence 45788999999999999999966543 45667665 999999999876 3565665 7775211111
Q ss_pred ------------HHHHHHHHHHHHHHhCCCccceEEeecCC
Q 024322 144 ------------RQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (269)
Q Consensus 144 ------------~~~v~~~v~~sL~~L~~d~iDll~lH~p~ 172 (269)
.....++++..|+.-|.+ .+++++-+..
T Consensus 203 ~TavlnA~L~pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdG 242 (674)
T COG0145 203 NTAVLNAYLSPILRRYLEAVKDALKERGIK-ARLMVMQSDG 242 (674)
T ss_pred hhheeeeeehHHHHHHHHHHHHHHHhcCCC-ceeEEEecCC
Confidence 124556666677777765 5677776644
No 445
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=25.28 E-value=1.7e+02 Score=26.71 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHhcCCCEeEEcccCCcc------------CCCcchhhHHHHHHHcCCeEEEcc
Q 024322 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLI------------YRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~------------~~~~~~~~l~~~~~~~gi~via~s 253 (269)
+.+.++++++..++.++|++++.+...-. .+++...++++..++.|+.++.+.
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 55667777777777777777766542211 123311368888889898887764
No 446
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=25.23 E-value=4.2e+02 Score=22.34 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=9.8
Q ss_pred hHHHHHHHc-CCeEEE
Q 024322 237 GVKAACDEL-GITLIA 251 (269)
Q Consensus 237 ~l~~~~~~~-gi~via 251 (269)
++.+.|+++ |+.+..
T Consensus 143 g~~~~~~~~~~~~~~~ 158 (275)
T cd06320 143 GFTEAIKKASGIEVVA 158 (275)
T ss_pred HHHHHHhhCCCcEEEE
Confidence 466777777 766543
No 447
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.21 E-value=1.8e+02 Score=21.99 Aligned_cols=70 Identities=23% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCC-CC---------------
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA-AL--------------- 138 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~-~~--------------- 138 (269)
......---++++|.-|+-|-..|--|+ |-++---|-+.+ +++++.+|+. ..
T Consensus 20 a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~p-----ekl~vagkVaWitP~gt~sr~~GiGv~f 87 (117)
T COG3215 20 ALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDFP-----EKLPVAGKVAWITPVGTQSRPAGIGVQF 87 (117)
T ss_pred HHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCch-----hhccccceEEEEccCCCCCCCCceeeec
Confidence 4444455556799999999999997653 555555555544 6788888873 11
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 024322 139 PWRLGRQSVLAALKDSLF 156 (269)
Q Consensus 139 ~~~~~~~~v~~~v~~sL~ 156 (269)
...-.-..+++++|.-|-
T Consensus 88 ~d~e~g~~vr~~IE~~Lg 105 (117)
T COG3215 88 TDGENGLKVRNQIETLLG 105 (117)
T ss_pred cCCCchhhHHHHHHHHHH
Confidence 112233478889988874
No 448
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=25.18 E-value=4.1e+02 Score=22.29 Aligned_cols=89 Identities=10% Similarity=0.127 Sum_probs=53.6
Q ss_pred HhCCCccceEEee-cCCC--CChhHH----HHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEeEEcccCCcc
Q 024322 157 RLGLSSVELYQLH-WAGI--WGNEGF----IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 157 ~L~~d~iDll~lH-~p~~--~~~~~~----~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (269)
.-|.|+||+=.-- +|.. .+.++- ...++.+++..-=--|.+-+++++.++++++. |.++..+...+..
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~----g~~~ind~~~~~~- 104 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA----GADIINDISGFED- 104 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH----TSSEEEETTTTSS-
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc----CcceEEecccccc-
Confidence 3477888864221 2332 122333 33444445411113577889999999999764 5666555555433
Q ss_pred CCCcchhhHHHHHHHcCCeEEEcccc
Q 024322 230 YRKPEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~via~spl 255 (269)
. + ++++.+++++..++++-..
T Consensus 105 --~-~--~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --D-P--EMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --S-T--THHHHHHHHTSEEEEESES
T ss_pred --c-c--hhhhhhhcCCCEEEEEecc
Confidence 1 1 5999999999999988765
No 449
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.13 E-value=2.7e+02 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCCEEEc
Q 024322 75 KAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~Dt 94 (269)
|.....++.|++.|++.+++
T Consensus 13 ENT~~af~~A~~~g~d~vE~ 32 (249)
T cd08561 13 ENTLLAFEDAVELGADVLET 32 (249)
T ss_pred ccHHHHHHHHHHhCCCEEEE
Confidence 78888999999999997774
No 450
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=25.12 E-value=4.4e+02 Score=26.53 Aligned_cols=70 Identities=13% Similarity=0.239 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHcCcccEEEecCcc--HHHHHHHHHHHHhcCCCEeEEcccCCccCCC---cc----hhhHHHHHHHcCC
Q 024322 177 EGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRK---PE----ENGVKAACDELGI 247 (269)
Q Consensus 177 ~~~~~~L~~L~~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~---~~----~~~l~~~~~~~gi 247 (269)
..+...|..|++.|- .|++.+|. ...+..+.. ++|+++.+.-+++..- .. -..++.+|++.||
T Consensus 678 ~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l~~------l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 749 (799)
T PRK11359 678 TEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRLVS------LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNL 749 (799)
T ss_pred HHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHhh------CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCC
Confidence 455667777777774 56666652 234444433 3677776665543321 11 1258999999999
Q ss_pred eEEEccc
Q 024322 248 TLIAYCP 254 (269)
Q Consensus 248 ~via~sp 254 (269)
.+|+-+.
T Consensus 750 ~via~gV 756 (799)
T PRK11359 750 TVVAEGV 756 (799)
T ss_pred eEEEEcC
Confidence 9998653
No 451
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=25.06 E-value=4e+02 Score=23.34 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=33.7
Q ss_pred ccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCC
Q 024322 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 162 ~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (269)
.+|++..-. ++....+.++.+.+.|+=--+|...++.++.+++.+.+++.+++
T Consensus 68 ~~DvVIdfT----~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~ 120 (266)
T TIGR00036 68 DPDVLIDFT----TPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIA 120 (266)
T ss_pred CCCEEEECC----ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCcc
Confidence 366655443 34566666777777777666677777777777776666655543
No 452
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.92 E-value=2.1e+02 Score=26.11 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHhcCCCEeEEccc---------------C-----------CccC-----CCcchhhHHHHHHHcCCeE
Q 024322 201 SEKRLRNAYEKLKKRGIPLASNQVN---------------Y-----------SLIY-----RKPEENGVKAACDELGITL 249 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~---------------~-----------n~~~-----~~~~~~~l~~~~~~~gi~v 249 (269)
+.+.++++++..++.++|++++.+. | .... +-++-.++++..++.|+.+
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 5677777777778888888887553 1 1110 0012236999999999999
Q ss_pred EEc
Q 024322 250 IAY 252 (269)
Q Consensus 250 ia~ 252 (269)
+.|
T Consensus 102 ~l~ 104 (340)
T cd06597 102 LLW 104 (340)
T ss_pred EEE
Confidence 754
No 453
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=24.87 E-value=2.2e+02 Score=27.10 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=42.0
Q ss_pred CcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCC
Q 024322 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (269)
Q Consensus 45 g~~v~~lglG~~~~~~~~~~~~~~~~~~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~ 124 (269)
|+ ||..|+.-...|.. .-.+...+-|+..-+.|-.+-=..-.||.| ..++-+++.+..
T Consensus 16 Gv-VP~~Gl~~~~VGr~----------~e~~~l~~~l~~v~~G~s~~kfi~G~YGsG--------KTf~l~~i~~~A--- 73 (416)
T PF10923_consen 16 GV-VPRIGLDHIAVGRE----------REIEALDRDLDRVADGGSSFKFIRGEYGSG--------KTFFLRLIRERA--- 73 (416)
T ss_pred CC-CCcccCcceeechH----------HHHHHHHHHHHHHhCCCCeEEEEEeCCCCc--------HHHHHHHHHHHH---
Confidence 65 99999998887764 122344444554434444444455679998 557788887765
Q ss_pred CCCcEEEEecC
Q 024322 125 PEVEVTVATKF 135 (269)
Q Consensus 125 ~R~~l~I~tK~ 135 (269)
+++=|+++.+
T Consensus 74 -~~~~fvvs~v 83 (416)
T PF10923_consen 74 -LEKGFVVSEV 83 (416)
T ss_pred -HHcCCEEEEE
Confidence 3455555554
No 454
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=24.77 E-value=3.8e+02 Score=26.10 Aligned_cols=125 Identities=13% Similarity=0.213 Sum_probs=68.0
Q ss_pred HHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCC--CCChhHHHHHHHHHHH
Q 024322 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVE 188 (269)
Q Consensus 111 ~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~--~~~~~~~~~~L~~L~~ 188 (269)
+-+|.+|+.. .+++|+-.+.. .+.....+..-+.+.+++-++. -.-+-|.--+ ..+.......+..+++
T Consensus 342 ~dlG~~L~~~------~~l~VsINl~a--~Dl~s~rli~~~~~~l~~~~v~-pqQI~lElTER~f~D~~~~~~iI~r~Re 412 (524)
T COG4943 342 RDLGDLLRQH------RDLHVSINLSA--SDLASPRLIDRLNRKLAQYQVR-PQQIALELTERTFADPKKMTPIILRLRE 412 (524)
T ss_pred HHhHHHHHhC------cceEEEEeeee--hhhcCchHHHHHHHHHHhcCcC-hHHheeehhhhhhcCchhhhHHHHHHHh
Confidence 4466666653 47777777754 4555666777777777776653 2222222111 1334566677888888
Q ss_pred cCcccEEEecCccH--HHHHHHHHHHHhcCCCEeEEcccCCccCC--------CcchhhHHHHHHHcCCeEEEcc
Q 024322 189 QGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPLASNQVNYSLIYR--------KPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 189 ~G~ir~iGvS~~~~--~~i~~~~~~~~~~~~~~~~~q~~~n~~~~--------~~~~~~l~~~~~~~gi~via~s 253 (269)
.|- .|=+-.|.. ..+..+.+ .++|+.-+.=++.+. -... .+++.+++.++.+++=+
T Consensus 413 aG~--~IyIDDFGTGYSnL~YLq~------L~VDaLKIDKsFvdtlg~~~a~~~I~~-hII~MAk~L~L~iVaEG 478 (524)
T COG4943 413 AGH--EIYIDDFGTGYSNLHYLQS------LPVDALKIDKSFVDTLGTDSASHLIAP-HIIEMAKSLGLKIVAEG 478 (524)
T ss_pred cCC--eEEEccCcCcchhHHHHhh------CCccceeccHHHHHhhccCcccchhHH-HHHHHHHHcCCcEEeec
Confidence 885 344444421 23333322 245555554443332 1112 37888888888887753
No 455
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.76 E-value=3.8e+02 Score=24.06 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeec-CCC---CChhHHHHHHHHHHH--cCcc-cEEEecCccHHHHHHHHHHHH
Q 024322 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI---WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 141 ~~~~~~v~~~v~~sL~~L~~d~iDll~lH~-p~~---~~~~~~~~~L~~L~~--~G~i-r~iGvS~~~~~~i~~~~~~~~ 213 (269)
..+.+.+++.++..+. .| +|=+++-. -.. ...+|-.+.++..++ .|++ -.+|++..+.++..++.+.++
T Consensus 25 ~iD~~~l~~lv~~li~-~G---v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 25 TVDLDETARLVERLIA-AG---VDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHH
Confidence 4566777777776665 34 44444432 222 334444444444433 2443 468998888888888888888
Q ss_pred hcCCCEeEEcccC-CccCCCcchhhHHHH----HHHc-CCeEEEcc
Q 024322 214 KRGIPLASNQVNY-SLIYRKPEENGVKAA----CDEL-GITLIAYC 253 (269)
Q Consensus 214 ~~~~~~~~~q~~~-n~~~~~~~~~~l~~~----~~~~-gi~via~s 253 (269)
..|..-..+..+| .... .++++++ |+.- +++|+.|.
T Consensus 101 ~~Gad~vlv~~P~y~~~~----~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 101 DLGADGTMLGRPMWLPLD----VDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred HhCCCEEEECCCcCCCCC----HHHHHHHHHHHHHhCCCCcEEEEc
Confidence 8776544444443 2222 1245554 4555 58999884
No 456
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=24.72 E-value=1.1e+02 Score=28.42 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=25.6
Q ss_pred EEecCc----cHHHHHHHHHHHHhcCCC--EeEEcccCCccCCC-cchhhHHHHHHHcCCeEEE
Q 024322 195 VGVSNY----SEKRLRNAYEKLKKRGIP--LASNQVNYSLIYRK-PEENGVKAACDELGITLIA 251 (269)
Q Consensus 195 iGvS~~----~~~~i~~~~~~~~~~~~~--~~~~q~~~n~~~~~-~~~~~l~~~~~~~gi~via 251 (269)
+|+|-| +.+...+.++.+.+.|+. |++.+++-.-.... ..-.+++++|+++|+.+++
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~ 65 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIA 65 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEE
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 566633 245555666666666643 55544433110000 0011477888888887776
No 457
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=24.62 E-value=5.1e+02 Score=23.19 Aligned_cols=120 Identities=13% Similarity=0.018 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHH-HHHHH---HhccCCCCCCcEEEEecCCCCCC---CCCHHHH
Q 024322 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL-LGRFI---KERKQRDPEVEVTVATKFAALPW---RLGRQSV 147 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~-lG~al---~~~~~~~~R~~l~I~tK~~~~~~---~~~~~~v 147 (269)
+++.+.+-.+++.|-+.| .+|+|.| -.. .-.+. ..... +++.+....-.+.... ....+.-
T Consensus 45 ~~a~~~~~~~l~~ggrl~----~~GaG~S------g~la~~dA~e~~~tf~~--~~~~~~~~iagg~~a~~~a~~~~ed~ 112 (296)
T PRK12570 45 AQAVDKIVAAFKKGGRLI----YMGAGTS------GRLGVLDASECPPTFSV--SPEMVIGLIAGGPEAMFTAVEGAEDD 112 (296)
T ss_pred HHHHHHHHHHHHcCCeEE----EECCchh------HHHHHHHHHhCcchhcC--CcccceeeeecCchHhhhcccccCCc
Confidence 455566777888898876 4678766 322 11111 11221 1333322222221000 0001111
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCcccEEEecCccHHHHHHH
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~ 208 (269)
.....+.+...+...=|+++.-...- ...+++++++.+++.| ++-|++++.....+.+.
T Consensus 113 ~~~~~~~l~a~~l~~~DvvI~IS~SG-~T~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~ 171 (296)
T PRK12570 113 PELGAQDLKAIGLTADDVVVGIAASG-RTPYVIGALEYAKQIG-ATTIALSCNPDSPIAKI 171 (296)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEeCCC-CCHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 33334455556666669888876432 3567999999999998 78899998765555443
No 458
>PRK04132 replication factor C small subunit; Provisional
Probab=24.61 E-value=3.1e+02 Score=28.68 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHHhCCC--ccceEEeecCCCCChhHHHHHHHHHHHc--CcccEEEecCccHHHHHHHHHHHHhcCC
Q 024322 142 LGRQSVLAALKDSLFRLGLS--SVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 142 ~~~~~v~~~v~~sL~~L~~d--~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (269)
.+.+.|++.+++....-... ..=+++|...|... .+...+|.+..++ +.++.|.++|.....+..+.+.
T Consensus 608 rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt-~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR------ 680 (846)
T PRK04132 608 RGINVIREKVKEFARTKPIGGASFKIIFLDEADALT-QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR------ 680 (846)
T ss_pred ccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC-HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh------
Confidence 45677887777665433222 12378888777644 4678889999996 8999999999765555444333
Q ss_pred CEeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024322 218 PLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (269)
|..+++.++.......-+...|++.|+.
T Consensus 681 ---C~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 681 ---CAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred ---ceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3344554444322211244455555653
No 459
>PRK15456 universal stress protein UspG; Provisional
Probab=24.57 E-value=88 Score=24.02 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=29.0
Q ss_pred ccCCccCCCcchhhHHHHHHHcCCeEEEcccccCccccccccC
Q 024322 224 VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGELLLFFLT 266 (269)
Q Consensus 224 ~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~L~~~~~~ 266 (269)
++..+....+.+ .++++++++++.+|.++.-+.| +...+.+
T Consensus 84 v~~~v~~G~~~~-~I~~~a~~~~~DLIVmG~~g~~-~~~~llG 124 (142)
T PRK15456 84 IKQHVRFGSVRD-EVNELAEELGADVVVIGSRNPS-ISTHLLG 124 (142)
T ss_pred eEEEEcCCChHH-HHHHHHhhcCCCEEEEcCCCCC-ccceecC
Confidence 344444444443 5999999999999999999877 5554443
No 460
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.52 E-value=4.3e+02 Score=22.32 Aligned_cols=41 Identities=7% Similarity=-0.003 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~ 120 (269)
.+.+++.++.+..++.|++.++-...-.+ +.+.+.+.-+++
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~--------a~~~I~~l~~~~ 53 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPA--------ALDAIRAVAAEV 53 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc--------HHHHHHHHHHHC
Confidence 35699999999999999999997654222 366665544443
No 461
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=24.52 E-value=2e+02 Score=22.38 Aligned_cols=41 Identities=2% Similarity=-0.093 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCC--hhHHHHHHHHHHHc
Q 024322 149 AALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAVEQ 189 (269)
Q Consensus 149 ~~v~~sL~~L~~d~iDll~lH~p~~~~--~~~~~~~L~~L~~~ 189 (269)
..+.+.|+.+....+|.++++..+... ..++...++.|.+.
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 344444444444556666666655522 34445555555554
No 462
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=24.52 E-value=5.2e+02 Score=23.24 Aligned_cols=48 Identities=8% Similarity=0.201 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHcCcccEEEe---cCccHHHHHHHHHHHHhcCCCEeEEc
Q 024322 176 NEGFIDGLGDAVEQGLVKAVGV---SNYSEKRLRNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGv---S~~~~~~i~~~~~~~~~~~~~~~~~q 223 (269)
.+.++++++.|++.|.--.+-+ .+.+.+++.++++.+.+.|+....++
T Consensus 148 f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~ 198 (318)
T TIGR03470 148 FDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTIS 198 (318)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 5688999999999986333322 34688999999999888887543333
No 463
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=24.45 E-value=4.2e+02 Score=22.41 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCc
Q 024322 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL 191 (269)
Q Consensus 149 ~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ 191 (269)
..+++.++++. -=+++++|.......+..=+.+..|+++|.
T Consensus 175 ~~~~~v~~~~~--~g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy 215 (224)
T TIGR02884 175 YAYKQIMKKIH--PGAILLLHAVSKDNAEALDKIIKDLKEQGY 215 (224)
T ss_pred HHHHHHHhcCC--CCcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 34455555543 347999997432223333444566667664
No 464
>PLN02224 methionine-tRNA ligase
Probab=24.39 E-value=4.5e+02 Score=26.38 Aligned_cols=104 Identities=8% Similarity=-0.059 Sum_probs=57.1
Q ss_pred HCCCCEEEcccccCCCCCCCCC-chHHHHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCCHH----HHHHHH
Q 024322 86 DNGITFFDTAEVYGSRASFGAI-NSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGRQ----SVLAAL 151 (269)
Q Consensus 86 ~~Gvn~~DtA~~Yg~g~~~~~~-~se~~lG~al~~~~~~~~R~~l~I~tK~~~~---------~~~~~~~----~v~~~v 151 (269)
+...-+|+|+..|-||.. |.+ ....++++.+.++..-. -.+++..+=+-.. ....++. .+...+
T Consensus 67 ~~~~~~ittp~pY~NG~~-HiGHa~~~~~aDviaR~~r~~-G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~ 144 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPP-HMGSAYTTIAADSIARFQRLL-GKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSY 144 (616)
T ss_pred CCCeEEEeCCCCCCCCCC-chhccHHHHHHHHHHHHHHhc-CCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHH
Confidence 344458999999998753 222 22345555555443110 1355555544210 0112222 234566
Q ss_pred HHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc
Q 024322 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir 193 (269)
.+.+++|++++ |.+.-. -++.-.+.+.+.+.+|.++|.|-
T Consensus 145 ~~~~~~l~I~~-D~f~rT-t~~~h~~~vq~~f~~L~~~G~Iy 184 (616)
T PLN02224 145 RTLWKDLDIAY-DKFIRT-TDPKHEAIVKEFYARVFANGDIY 184 (616)
T ss_pred HHHHHHcCCCC-CcCeeC-CCHHHHHHHHHHHHHHHHCCCEE
Confidence 78889999864 644321 11122466788899999999873
No 465
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.38 E-value=4e+02 Score=21.92 Aligned_cols=101 Identities=14% Similarity=0.230 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC---CChhHHHHHHHHHHHcCcccEEEecCccH--HHHHHHHHHHHhcCCCE
Q 024322 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 145 ~~v~~~v~~sL~~L~~d~iDll~lH~p~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~~--~~i~~~~~~~~~~~~~~ 219 (269)
+.+...+.+.+++.+... +-+.+--.+. .........+..|++.|- .+.+.+|.. ..+..+.. .+|
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~------l~~ 169 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR------LPV 169 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh------CCC
Confidence 345566777777766542 3344433322 223445588999999994 466776633 33344432 467
Q ss_pred eEEcccCCccCCCcc-------hhhHHHHHHHcCCeEEEccc
Q 024322 220 ASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 220 ~~~q~~~n~~~~~~~-------~~~l~~~~~~~gi~via~sp 254 (269)
+++-+..+.+..-.. -..++..|+..|+.+++-+.
T Consensus 170 d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 211 (241)
T smart00052 170 DLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV 211 (241)
T ss_pred CeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 877777655433211 12478999999999997643
No 466
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=24.28 E-value=1.8e+02 Score=26.47 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHhcCCCEeEEcccCCccC----------CCcchhhHHHHHHHcCCeEEEc
Q 024322 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIY----------RKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~----------~~~~~~~l~~~~~~~gi~via~ 252 (269)
+.+.++++++..++.++|++++.+...-.. +-++..++++..+++|+.++.+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEE
Confidence 445555555555555566555555421110 0011125777777777777755
No 467
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=24.25 E-value=1.8e+02 Score=26.25 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHhcCCCEeEEccc-CC-------------cc--CCC--cchhhHHHHHHHcCCeEEEcc
Q 024322 201 SEKRLRNAYEKLKKRGIPLASNQVN-YS-------------LI--YRK--PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~-~n-------------~~--~~~--~~~~~l~~~~~~~gi~via~s 253 (269)
+.+.++++++..++.++|++++.+. ++ -+ ++. ++-.++++..+++|+.++.+-
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYI 91 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 6777888888888888888887664 10 01 110 112368999999999888653
No 468
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=24.24 E-value=2.3e+02 Score=25.59 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeec-CCCC-C--hhHHHHHHHHHHHcCc-ccEEEecCc-----cHHHHHHHHHHHH
Q 024322 144 RQSVLAALKDSLFRLGLSSVELYQLHW-AGIW-G--NEGFIDGLGDAVEQGL-VKAVGVSNY-----SEKRLRNAYEKLK 213 (269)
Q Consensus 144 ~~~v~~~v~~sL~~L~~d~iDll~lH~-p~~~-~--~~~~~~~L~~L~~~G~-ir~iGvS~~-----~~~~i~~~~~~~~ 213 (269)
++.+..+++.+-+.-- +.-++=+ -... + .+.+++-++.|+++|. |-.||+=.| ..+.+...++...
T Consensus 155 ~~yi~~aF~~A~~~~P----~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~~~~i~~~l~~~~ 230 (320)
T PF00331_consen 155 PDYIADAFRAAREADP----NAKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYPPEQIWNALDRFA 230 (320)
T ss_dssp TCHHHHHHHHHHHHHT----TSEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhCC----CcEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCCHHHHHHHHHHHH
Confidence 4456666666655543 2222222 1111 1 3568888999999999 999998654 4578888888888
Q ss_pred hcCCCEeEEcccCCccCCCc----ch------hhHHHHHHHcC----CeEEEccccc
Q 024322 214 KRGIPLASNQVNYSLIYRKP----EE------NGVKAACDELG----ITLIAYCPIA 256 (269)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~----~~------~~l~~~~~~~g----i~via~spl~ 256 (269)
..|.++.+-.+..+...... +. .++++.|.++. -+|+.|+...
T Consensus 231 ~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D 287 (320)
T PF00331_consen 231 SLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTD 287 (320)
T ss_dssp TTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBT
T ss_pred HcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCC
Confidence 88877777666665544331 10 25888998888 4566665544
No 469
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.19 E-value=1.3e+02 Score=24.56 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCC--------C-------CChhHHHHHHHHHHHcC-cccEEEecCcc--HHHHHHH
Q 024322 147 VLAALKDSLFRLGLSSVELYQLHWAG--------I-------WGNEGFIDGLGDAVEQG-LVKAVGVSNYS--EKRLRNA 208 (269)
Q Consensus 147 v~~~v~~sL~~L~~d~iDll~lH~p~--------~-------~~~~~~~~~L~~L~~~G-~ir~iGvS~~~--~~~i~~~ 208 (269)
+.+.++...+.+-.+-.|++.-.... . .+..+++++|..+++.+ +|-.+|..+.. ...+.++
T Consensus 19 ~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~l 98 (176)
T PF06506_consen 19 LEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEEL 98 (176)
T ss_dssp HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHH
Confidence 56666666665444667777665321 0 23568888888888765 56666666552 3445444
Q ss_pred HHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024322 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 209 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~s 253 (269)
+ ...+.+..|+- ..+-...+..+++.|+.++.=+
T Consensus 99 l--------~~~i~~~~~~~---~~e~~~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 99 L--------GVDIKIYPYDS---EEEIEAAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp H--------T-EEEEEEESS---HHHHHHHHHHHHHTT--EEEES
T ss_pred h--------CCceEEEEECC---HHHHHHHHHHHHHcCCcEEECC
Confidence 3 23444444432 1111246777777777776543
No 470
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=24.14 E-value=3e+02 Score=21.04 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=41.7
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CChhHHHHHHHHHHHc
Q 024322 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~---d~iDll~lH~p~~--~~~~~~~~~L~~L~~~ 189 (269)
|--+.|+-|+| ....+..+++.+.++.+.+.- ..-|++++..+.. .+..+..+.|+.|.+.
T Consensus 44 R~G~~VsKKvG---~AV~RNRiKR~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~~ 109 (118)
T PRK00588 44 RVGLIIAKSVG---SAVERHRVARRLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLRR 109 (118)
T ss_pred EEEEEEeeecC---chhHHHHHHHHHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 67788888887 467788899999998887642 2345566577654 4456666666666443
No 471
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=24.05 E-value=5.2e+02 Score=23.04 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCcccEEEec---------------CccHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHH
Q 024322 180 IDGLGDAVEQGLVKAVGVS---------------NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 244 (269)
Q Consensus 180 ~~~L~~L~~~G~ir~iGvS---------------~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~ 244 (269)
-+.|+.|++.|.-+..|++ ..+.++..++++.+.+.|+++.+- +-+.+.....+..+.+.++++
T Consensus 107 ~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~-~iiG~~Et~ed~~~~l~~lr~ 185 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTAT-MMFGHVENPEHRVEHLLRIRK 185 (309)
T ss_pred HHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceee-EEecCCCCHHHHHHHHHHHHh
Confidence 4668888888875553321 124455556667777777654432 222222222222245566666
Q ss_pred cCC
Q 024322 245 LGI 247 (269)
Q Consensus 245 ~gi 247 (269)
.+.
T Consensus 186 l~~ 188 (309)
T TIGR00423 186 IQE 188 (309)
T ss_pred hch
Confidence 553
No 472
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=24.04 E-value=4.2e+02 Score=23.68 Aligned_cols=104 Identities=17% Similarity=0.106 Sum_probs=50.1
Q ss_pred HHHHHHCCCCEEEcccccCCC----------------CCCCCC--chHHHHHHHHHhccCCCCCCcEEEEecCCCCC-CC
Q 024322 81 FDTSLDNGITFFDTAEVYGSR----------------ASFGAI--NSETLLGRFIKERKQRDPEVEVTVATKFAALP-WR 141 (269)
Q Consensus 81 l~~Al~~Gvn~~DtA~~Yg~g----------------~~~~~~--~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~-~~ 141 (269)
+..=|+.|+||||-=..|..+ ..++.. .-..-+-++|.+.+ .|-|++.-|..+.. ..
T Consensus 36 i~~QL~~GiRyfDlRv~~~~~~~~~~~~~~~~~~~Hg~~~~~~l~~~L~~i~~FL~~~p----~EvVil~~~~~~~~~d~ 111 (281)
T cd08620 36 VSTQLALGARYFDFRPGYLWPQTRVLVLLNDLYHQHNMIPGQGFDTFLQDVVTFLKANP----TEIVVVHITWDGFDNDC 111 (281)
T ss_pred HHHHHhcCcEEEEEEeeeccCccccccccCcEEEEeeccCCCcHHHHHHHHHHHHHHCC----CcEEEEEEEcCCccccc
Confidence 556689999999974333211 000000 11233445666654 45566666643211 11
Q ss_pred CCHH--HHHHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCc--ccEEE
Q 024322 142 LGRQ--SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL--VKAVG 196 (269)
Q Consensus 142 ~~~~--~v~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~--ir~iG 196 (269)
++++ .+.+.+.+.+...+.... .+ ......+..|++|...|| |-.+.
T Consensus 112 ~~p~~~~l~~~l~~~f~~~~~~~~----~~----~~~~~~~~TL~~L~~~gkrvIv~y~ 162 (281)
T cd08620 112 ARPSAQEVVEALAQALASAKVGYV----TS----GTVSDLAASYAQLRQTGKRLIVLFG 162 (281)
T ss_pred cChhHHHHHHHHHHHhhccCcccc----CC----CccccccCcHHHHHhCCCEEEEEEc
Confidence 3444 344445555443333210 01 112334668888888766 44444
No 473
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=24.03 E-value=5.2e+02 Score=23.03 Aligned_cols=63 Identities=14% Similarity=0.014 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh
Q 024322 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (269)
Q Consensus 79 ~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L 158 (269)
+.++.|++.|=..|=.+.+||| =++++.++.... .++.+..|- .+...+.+-+.+..++.
T Consensus 123 e~l~~a~a~gkgvIllt~H~Gn---------WE~~~~~l~~~~-----~~~~~vyr~------~~n~~~d~~i~~~R~~~ 182 (308)
T PRK06553 123 EIFERLRDDGKPALIFTAHLGN---------WELLAIAAAAFG-----LDVTVLFRP------PNNPYAARKVLEARRTT 182 (308)
T ss_pred HHHHHHHhcCCCEEEEeeCchH---------HHHHHHHHHHcC-----CceEEEEec------CCChHHHHHHHHHHHHc
Confidence 5688888888888888899998 777888887543 255555443 23334555566666666
Q ss_pred CCC
Q 024322 159 GLS 161 (269)
Q Consensus 159 ~~d 161 (269)
|..
T Consensus 183 g~~ 185 (308)
T PRK06553 183 MGG 185 (308)
T ss_pred CCC
Confidence 643
No 474
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=24.01 E-value=2.3e+02 Score=21.73 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHCCCCEEE
Q 024322 75 KAAKAAFDTSLDNGITFFD 93 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn~~D 93 (269)
.|...+-..|.+.|+...+
T Consensus 19 ~Q~~~~~~~a~~~g~~i~~ 37 (148)
T smart00857 19 RQLEALRAYAKANGWEVVR 37 (148)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 5666667777788887554
No 475
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=23.98 E-value=4.5e+02 Score=22.28 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhcc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERK 121 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~ 121 (269)
.+.+++.++.+..++.|++.++....-.+ +.+.+.+.-++++
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~--------a~~~i~~l~~~~~ 58 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPV--------ALDAIRLLRKEVP 58 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCcc--------HHHHHHHHHHHCC
Confidence 35699999999999999999997653222 3666666655543
No 476
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=23.90 E-value=2.8e+02 Score=27.08 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=54.4
Q ss_pred EEEcccccCCCCCCCCC-chHH-HHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCCH----HHHHHHHHHHH
Q 024322 91 FFDTAEVYGSRASFGAI-NSET-LLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAALKDSL 155 (269)
Q Consensus 91 ~~DtA~~Yg~g~~~~~~-~se~-~lG~al~~~~~~~~R~~l~I~tK~~~~---------~~~~~~----~~v~~~v~~sL 155 (269)
+++|+..|-+|.. |.+ .... ++.+.+.++.+.. -.+++..+=+-.. ....++ +...+.+.+.+
T Consensus 6 ~i~~~~py~ng~~-HiGH~~~~~~~~D~~~R~~r~~-G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 6 LITSAWPYANGPL-HLGHLAGSGLPADVFARYQRLK-GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEecCCCCCCCCc-cccccccchhHHHHHHHHHHhc-CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6788888876543 332 2223 3444444332110 1455554443210 012233 34577888999
Q ss_pred HHhCCCccceEEeecCCCCChhHHHHHHHHHHHcCccc
Q 024322 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 156 ~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~G~ir 193 (269)
++||++ .|.+.-. -++.-.+.+.+.+.+|.+.|.|-
T Consensus 84 ~~l~i~-~d~~~~t-~~~~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 84 KKLGIS-YDLFTRT-TSPNHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred HHcCCc-CCCCcCC-CCHHHHHHHHHHHHHHHHCCCeE
Confidence 999997 4743211 11122567888899999999864
No 477
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=23.79 E-value=3.2e+02 Score=20.45 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHHCCCC-EEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn-~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
+.++++..+-|+..+.+|.+ -++.++. .. .|...+-+.|+... ...+++.|..
T Consensus 11 ~lt~~~i~~QI~yll~qG~~~~lE~ad~---------------------~~----~~~~yW~mwklP~f-~~~d~~~Vl~ 64 (99)
T cd03527 11 PLTDEQIAKQIDYIISNGWAPCLEFTEP---------------------EH----YDNRYWTMWKLPMF-GCTDPAQVLR 64 (99)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcccC---------------------CC----CCCCEEeeccCCCC-CCCCHHHHHH
Confidence 35679999999999999987 4443322 00 26778887787431 2467889999
Q ss_pred HHHHHHHHhCCCccceEEee
Q 024322 150 ALKDSLFRLGLSSVELYQLH 169 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH 169 (269)
.|++.++.-.-+||=|+=+.
T Consensus 65 ei~~C~~~~p~~YVRliG~D 84 (99)
T cd03527 65 EIEACRKAYPDHYVRVVGFD 84 (99)
T ss_pred HHHHHHHHCCCCeEEEEEEe
Confidence 99999998877777665544
No 478
>PRK06256 biotin synthase; Validated
Probab=23.72 E-value=5.4e+02 Score=23.11 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCEEE-cccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024322 71 DRKMKAAKAAFDTSLDNGITFFD-TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 71 ~~~~e~~~~~l~~Al~~Gvn~~D-tA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~ 149 (269)
..+.++..+.++.+.+.|++.|- .+..++.... -.+.+-+.++.... +-.+-+.+-.+ ..+.+.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~-----~~~~~~e~i~~i~~---~~~i~~~~~~g----~l~~e~l-- 155 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGK-----EVDQVVEAVKAIKE---ETDLEICACLG----LLTEEQA-- 155 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCch-----HHHHHHHHHHHHHh---cCCCcEEecCC----cCCHHHH--
Confidence 35779999999999999986332 2222222100 01244455554431 12333333332 2344333
Q ss_pred HHHHHHHHhCCCccceEEeec-CC-------CCChhHHHHHHHHHHHcCccc----EEEecCccHHHHHHHHHHHHhcC
Q 024322 150 ALKDSLFRLGLSSVELYQLHW-AG-------IWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 150 ~v~~sL~~L~~d~iDll~lH~-p~-------~~~~~~~~~~L~~L~~~G~ir----~iGvS~~~~~~i~~~~~~~~~~~ 216 (269)
+.|++.|++.+-+- +.. +. ....++.+++++.+++.|.-- -+|+ +.+.+.+.+.+..+++.+
T Consensus 156 ---~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~ 229 (336)
T PRK06256 156 ---ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELD 229 (336)
T ss_pred ---HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCC
Confidence 34777787654321 111 00 023578899999999999622 2344 557777777777766554
No 479
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.54 E-value=3.8e+02 Score=25.18 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------hhHHHHHH
Q 024322 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (269)
Q Consensus 110 e~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~p~~~~------~~~~~~~L 183 (269)
|+-|-++|.+...+++.+=++|.|=+. ...--+.+..-+++.-++++ +.++.+|.|.... .+.++++|
T Consensus 74 ~~kL~~aI~~~~~~~~P~~I~V~ttC~---~~iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~al 147 (426)
T cd01972 74 EKKLEDTIKEAYSRYKPKAIFVATSCA---TGIIGDDVESVVEELEDEIG---IPVVALHCEGFKGKHWRSGFDAAFHGI 147 (426)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCh---HHHhccCHHHHHHHHHHhhC---CCEEEEeCCccCCccHhHHHHHHHHHH
Confidence 888888888765444345567776663 22223334444444444443 6789999887632 23344444
Q ss_pred HHHH--------HcCcccEEEecCc-c---HHHHHHHHHHHHhcCCCEeEE
Q 024322 184 GDAV--------EQGLVKAVGVSNY-S---EKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 184 ~~L~--------~~G~ir~iGvS~~-~---~~~i~~~~~~~~~~~~~~~~~ 222 (269)
.+.. +++.|--||..+. + ...+.++.+..+..|+++..+
T Consensus 148 ~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~ 198 (426)
T cd01972 148 LRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAI 198 (426)
T ss_pred HHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEE
Confidence 3322 2345778887653 1 233344444455566655443
No 480
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=23.52 E-value=2.7e+02 Score=22.80 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHHcCcccEEEecCc----cHHHHHHHHHHHHhcC
Q 024322 172 GIWGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKRG 216 (269)
Q Consensus 172 ~~~~~~~~~~~L~~L~~~G~ir~iGvS~~----~~~~i~~~~~~~~~~~ 216 (269)
.+.+.+++.+.+++++++| |++|.||.. ++++=+++.+.+++.|
T Consensus 129 ~~ld~~~v~~~~~~l~~~g-v~avAV~~~fS~~np~hE~~v~eii~e~g 176 (176)
T PF05378_consen 129 EPLDEDEVREALRELKDKG-VEAVAVSLLFSYRNPEHEQRVAEIIREEG 176 (176)
T ss_pred cCCCHHHHHHHHHHHHhCC-CCEEEEECccCCCCHHHHHHHHHHHHhcC
No 481
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=23.50 E-value=5.1e+02 Score=22.72 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEccc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~ 96 (269)
.+.++..++++.-.+.||..++...
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4558888899999999999999864
No 482
>PRK15108 biotin synthase; Provisional
Probab=23.47 E-value=5.7e+02 Score=23.36 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.+.|+..+..+.+.+.|++.|-......+... ..-+.+-+.++...+ ..+.++.-.+ ..+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~----~~~e~i~~~i~~ik~----~~i~v~~s~G----~ls~e~l---- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHE----RDMPYLEQMVQGVKA----MGLETCMTLG----TLSESQA---- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCc----chHHHHHHHHHHHHh----CCCEEEEeCC----cCCHHHH----
Confidence 57789888888888999998843222111100 113566666665431 1232322242 2333333
Q ss_pred HHHHHHhCCCccceEEeecCCC-------CChhHHHHHHHHHHHcCcccE----EEecCccHHHHHHHHHHHHhc
Q 024322 152 KDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRNAYEKLKKR 215 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~-------~~~~~~~~~L~~L~~~G~ir~----iGvS~~~~~~i~~~~~~~~~~ 215 (269)
+-|+..|+|.+.+-+==.|.. ...++.++.++.+++.|.--. +|+.. +.+.+.+.+..++..
T Consensus 140 -~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE-t~ed~v~~~~~l~~l 212 (345)
T PRK15108 140 -QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE-TVKDRAGLLLQLANL 212 (345)
T ss_pred -HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC-CHHHHHHHHHHHHhc
Confidence 335666777543211011111 236789999999999996333 44433 344433333333433
No 483
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=23.45 E-value=1.3e+02 Score=22.91 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhcc
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERK 121 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~ 121 (269)
.+.+.-..++..+++.|.+.-+.|..||- +...+..|.+++.
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gI--------s~~tl~~W~r~y~ 54 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGV--------AASQLFLWRKQYQ 54 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCc--------CHHHHHHHHHHHh
Confidence 45577788999999999999999999996 5999999999875
No 484
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=23.43 E-value=5e+02 Score=22.59 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeec-CCC---CChhHHHHHHHHHHHc--Ccc-cEEEecCccHHHHHHHHHHH
Q 024322 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI---WGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 140 ~~~~~~~v~~~v~~sL~~L~~d~iDll~lH~-p~~---~~~~~~~~~L~~L~~~--G~i-r~iGvS~~~~~~i~~~~~~~ 212 (269)
...+.+.+++.++..++. |++- +++-. -.. ...+|-.+.++..++. |++ -..|++..+.+...+..+.+
T Consensus 13 g~iD~~~~~~~i~~l~~~-Gv~g---i~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a 88 (281)
T cd00408 13 GEVDLDALRRLVEFLIEA-GVDG---LVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHA 88 (281)
T ss_pred CCcCHHHHHHHHHHHHHc-CCCE---EEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHH
Confidence 356778888888887775 6544 44332 221 3355555555555543 333 36888888877777777777
Q ss_pred HhcCCCEeEEcccCCccCCCcchhhHHHHH----HHcCCeEEEccc
Q 024322 213 KKRGIPLASNQVNYSLIYRKPEENGVKAAC----DELGITLIAYCP 254 (269)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~----~~~gi~via~sp 254 (269)
+..|..-..+.-+|... .. .++++++. +.-+++++-|..
T Consensus 89 ~~~Gad~v~v~pP~y~~-~~--~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 89 EEAGADGVLVVPPYYNK-PS--QEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred HHcCCCEEEECCCcCCC-CC--HHHHHHHHHHHHhcCCCCEEEEEC
Confidence 77776655555554332 11 22455544 345888888754
No 485
>PRK09875 putative hydrolase; Provisional
Probab=23.41 E-value=5.4e+02 Score=23.04 Aligned_cols=40 Identities=5% Similarity=0.100 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHCCCC-EEEcccccCCCCCCCCCchHHHHHHHHHh
Q 024322 73 KMKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKE 119 (269)
Q Consensus 73 ~~e~~~~~l~~Al~~Gvn-~~DtA~~Yg~g~~~~~~~se~~lG~al~~ 119 (269)
+.+.+.+-+..+.+.|++ .+|.. .+|-|+. -..+.+.-++
T Consensus 32 ~~~~~~~el~~~~~~Gg~tiVd~T-~~g~GRd------~~~l~~is~~ 72 (292)
T PRK09875 32 QYAFICQEMNDLMTRGVRNVIEMT-NRYMGRN------AQFMLDVMRE 72 (292)
T ss_pred cHHHHHHHHHHHHHhCCCeEEecC-CCccCcC------HHHHHHHHHH
Confidence 346666667777778776 66755 4455555 5555555444
No 486
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=23.40 E-value=1.7e+02 Score=25.67 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=16.3
Q ss_pred hHHHHHHHcCCeEEEccc
Q 024322 237 GVKAACDELGITLIAYCP 254 (269)
Q Consensus 237 ~l~~~~~~~gi~via~sp 254 (269)
++++.|+++|+.+.+|..
T Consensus 241 ~~v~~~~~~Gl~v~vWTv 258 (282)
T cd08605 241 TAVSLVKASGLELGTYGK 258 (282)
T ss_pred HHHHHHHHcCcEEEEeCC
Confidence 589999999999999975
No 487
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.38 E-value=96 Score=17.87 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHCCCC
Q 024322 75 KAAKAAFDTSLDNGIT 90 (269)
Q Consensus 75 e~~~~~l~~Al~~Gvn 90 (269)
++...+|..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6788899999999984
No 488
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=23.37 E-value=3.1e+02 Score=23.58 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.1
Q ss_pred hHHHHHHHcCCeEEEcccccCc
Q 024322 237 GVKAACDELGITLIAYCPIAQG 258 (269)
Q Consensus 237 ~l~~~~~~~gi~via~spl~~G 258 (269)
.|-.+|++++|.|++-+.|.+.
T Consensus 161 ~Lk~lA~~~~i~vi~~sQlnr~ 182 (259)
T PF03796_consen 161 ELKALAKELNIPVIALSQLNRE 182 (259)
T ss_dssp HHHHHHHHHTSEEEEEEEBSGG
T ss_pred HHHHHHHHcCCeEEEccccChh
Confidence 4778888899999998888765
No 489
>PRK05443 polyphosphate kinase; Provisional
Probab=23.31 E-value=3.3e+02 Score=27.72 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=51.5
Q ss_pred EeecCCCCChhHHHHHHHHHHHcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHH
Q 024322 167 QLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD 243 (269)
Q Consensus 167 ~lH~p~~~~~~~~~~~L~~L~~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~ 243 (269)
+||.|. .+.+-+++.+++....-.|.+|=++-| +...|.+++..|.+.|..+.+ .++...-.............+
T Consensus 342 LLh~PY-~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~v-lve~karfde~~n~~~~~~L~ 419 (691)
T PRK05443 342 LLHHPY-ESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTV-LVELKARFDEEANIRWARRLE 419 (691)
T ss_pred EEECCc-cCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEE-EEccCccccHHHHHHHHHHHH
Confidence 445553 234667888999999999999999877 234555555557777765444 444443111111114677778
Q ss_pred HcCCeEE
Q 024322 244 ELGITLI 250 (269)
Q Consensus 244 ~~gi~vi 250 (269)
+.|+.|+
T Consensus 420 ~aGv~V~ 426 (691)
T PRK05443 420 EAGVHVV 426 (691)
T ss_pred HcCCEEE
Confidence 8899984
No 490
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.22 E-value=4.9e+02 Score=22.48 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhcCCCEe
Q 024322 204 RLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 204 ~i~~~~~~~~~~~~~~~ 220 (269)
.++++++.+...|.+..
T Consensus 86 ~~~~~i~~A~~lG~~~v 102 (279)
T cd00019 86 RLKDEIERCEELGIRLL 102 (279)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 34455555555555433
No 491
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=23.05 E-value=5.6e+02 Score=23.04 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 024322 176 NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v 249 (269)
..|+++.+ .++..||-+|=+--| +.+.+..+++.+.+.+++.=+ ++++.... ..++.|.+.+|..
T Consensus 135 IKE~vR~~--I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYi------LLD~~~~~-~Fl~Mc~~~~v~~ 200 (284)
T PF07894_consen 135 IKEVVRRM--IQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYI------LLDEQNLP-HFLEMCEKLGVNL 200 (284)
T ss_pred HHHHHHHH--HHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEE------EechhcCh-HHHHHHHHCCCCh
Confidence 45555443 356688988888888 789999999987677774333 33333333 3788888887653
No 492
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=22.99 E-value=5.6e+02 Score=23.02 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCcc
Q 024322 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGE 259 (269)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl~~G~ 259 (269)
++.+|.++.+.+++.+++..+++-.++.- .+-..+++-|+.++...|++.+.
T Consensus 237 s~~~l~~l~~~ik~~~v~~If~e~~~~~~-------~~~~la~e~g~~v~~ldpl~~~~ 288 (311)
T PRK09545 237 GAQRLHEIRTQLVEQKATCVFAEPQFRPA-------VIESVAKGTSVRMGTLDPLGTNI 288 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCChH-------HHHHHHHhcCCeEEEeccccccc
Confidence 66888888888888888877776665441 24566777888888877887554
No 493
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.91 E-value=2.9e+02 Score=22.76 Aligned_cols=93 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCChhHHHHHHHHHHHc--CcccEEEecCccHH--HHHHHHHHHHhcCCCEeEEc
Q 024322 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEK--RLRNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 148 ~~~v~~sL~~L~~d~iDll~lH~p~~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~--~i~~~~~~~~~~~~~~~~~q 223 (269)
.+...+..+.| -+.+|.+-+-++ .....-.+.++++++. ++.-.+++--.++. +++++.+. ..+++-
T Consensus 11 ~~~a~~~~~~l-~~~v~~iev~~~--l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~------Gad~i~ 81 (206)
T TIGR03128 11 IEEALELAEKV-ADYVDIIEIGTP--LIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAA------GADIVT 81 (206)
T ss_pred HHHHHHHHHHc-ccCeeEEEeCCH--HHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHc------CCCEEE
Q ss_pred ccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024322 224 VNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 224 ~~~n~~~~~~~~~~l~~~~~~~gi~via 251 (269)
+++-.-..... +++++|+++|+.++.
T Consensus 82 vh~~~~~~~~~--~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 82 VLGVADDATIK--GAVKAAKKHGKEVQV 107 (206)
T ss_pred EeccCCHHHHH--HHHHHHHHcCCEEEE
No 494
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=22.89 E-value=2.2e+02 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=16.3
Q ss_pred hHHHHHHHcCCeEEEccc
Q 024322 237 GVKAACDELGITLIAYCP 254 (269)
Q Consensus 237 ~l~~~~~~~gi~via~sp 254 (269)
.+++.++++|+.+.+|..
T Consensus 219 ~~v~~~~~~G~~v~vWTV 236 (258)
T cd08573 219 AYVRYWRARGIRVIAWTV 236 (258)
T ss_pred HHHHHHHHCCCEEEEEec
Confidence 589999999999999976
No 495
>PRK07360 FO synthase subunit 2; Reviewed
Probab=22.88 E-value=6.1e+02 Score=23.41 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024322 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~e~~~~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~~v~~~v 151 (269)
.+.|+..+..+.+.+.|+ .++.|+ .|..+.....+++.+.+
T Consensus 91 ls~eeI~~~a~~a~~~G~-------------------------------------~~i~l~--~G~~p~~~~~e~~~~~i 131 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGA-------------------------------------TEVCIQ--GGLHPAADSLEFYLEIL 131 (371)
T ss_pred CCHHHHHHHHHHHHhCCC-------------------------------------CEEEEc--cCCCCCCCcHHHHHHHH
Q ss_pred HHHHHHhCCCccceEEeecCCC--------CChhHHHHHHHHHHHcCcccEEEec---------------CccHHHHHHH
Q 024322 152 KDSLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLVKAVGVS---------------NYSEKRLRNA 208 (269)
Q Consensus 152 ~~sL~~L~~d~iDll~lH~p~~--------~~~~~~~~~L~~L~~~G~ir~iGvS---------------~~~~~~i~~~ 208 (269)
+...+ ...-+.+|.... ..-.-..+.++.|++.|.-+..|.+ ..+.+...+.
T Consensus 132 ~~ik~-----~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~ 206 (371)
T PRK07360 132 EAIKE-----EFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEI 206 (371)
T ss_pred HHHHH-----hCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHH
Q ss_pred HHHHHhcCCCEeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccc
Q 024322 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 209 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~via~spl 255 (269)
++.+.+.|++. +.-+-|.+.....+.-+.+.+.++.+.....++++
T Consensus 207 i~~a~~~Gl~~-~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~f 252 (371)
T PRK07360 207 VKTAHKLGLPT-TSTMMYGHVETPEHRIDHLLILREIQQETGGITEF 252 (371)
T ss_pred HHHHHHcCCCc-eeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEE
No 496
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.85 E-value=6.6e+02 Score=23.86 Aligned_cols=133 Identities=9% Similarity=0.128 Sum_probs=72.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCEEE----cccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHH
Q 024322 70 DDRKMKAAKAAFDTSLDNGITFFD----TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (269)
Q Consensus 70 ~~~~~e~~~~~l~~Al~~Gvn~~D----tA~~Yg~g~~~~~~~se~~lG~al~~~~~~~~R~~l~I~tK~~~~~~~~~~~ 145 (269)
...+.++..+-++...+.|++.|- ....|++... ..-+.+.|+......+..++.+.+. .+.
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~------~~~l~~Ll~~l~~~~~~~rir~~~~--------~p~ 241 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA------GADFAGLLDAVSRAAPEMRIRFTTS--------HPK 241 (445)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC------CchHHHHHHHHhhcCCCcEEEEccC--------Chh
Confidence 445667888888888899998662 1223543110 1113344443321100123433331 233
Q ss_pred HHHHHHHHHHHHh--CCCccceEEeecCCC--------CChhHHHHHHHHHHHc--Cccc----EEEecCccHHHHHHHH
Q 024322 146 SVLAALKDSLFRL--GLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQ--GLVK----AVGVSNYSEKRLRNAY 209 (269)
Q Consensus 146 ~v~~~v~~sL~~L--~~d~iDll~lH~p~~--------~~~~~~~~~L~~L~~~--G~ir----~iGvS~~~~~~i~~~~ 209 (269)
.+...+-+.+++. +..++++=+=|.-+. ...+++.++++.+++. |..- -+|+-+-+.+.+++.+
T Consensus 242 ~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl 321 (445)
T PRK14340 242 DISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATL 321 (445)
T ss_pred hcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHH
Confidence 3333333444443 455665544443222 3467888888888887 6522 3677777888888888
Q ss_pred HHHHhcC
Q 024322 210 EKLKKRG 216 (269)
Q Consensus 210 ~~~~~~~ 216 (269)
+.+++.+
T Consensus 322 ~~~~~~~ 328 (445)
T PRK14340 322 SLMEEVR 328 (445)
T ss_pred HHHHhcC
Confidence 8877654
No 497
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=22.83 E-value=6.4e+02 Score=23.70 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCC-CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC--ccceEEeecCCCCC-----hhHHHH
Q 024322 110 ETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS--SVELYQLHWAGIWG-----NEGFID 181 (269)
Q Consensus 110 e~~lG~al~~~~~~~-~R~~l~I~tK~~~~~~~~~~~~v~~~v~~sL~~L~~d--~iDll~lH~p~~~~-----~~~~~~ 181 (269)
|+.+-+++.+...+. +.+=++|.|=+- .+.+-..++...+++.-+ -++++.+|.|.... .+.+++
T Consensus 81 ~~~L~~ai~ei~~~~~~P~~I~V~tTC~-------~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~ 153 (427)
T PRK02842 81 NEELDRVVEELIKRRPNISVLFLVGSCP-------SEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLA 153 (427)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCCh-------HHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHH
Confidence 888888888733222 234566666553 333333344444444433 36788888887633 334444
Q ss_pred HHHHHH-----HcCcccEEEecCccHHHHHHHHHHHHhcCCCE
Q 024322 182 GLGDAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 182 ~L~~L~-----~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (269)
+|.+.. +.+.|--+|..+- ....++.+..+..|+++
T Consensus 154 alv~~~~~~~~~~~~VniiG~~~~--~d~~el~~lL~~~Gi~v 194 (427)
T PRK02842 154 ALVPFCPEAPADHPSLVLVGSLAD--VVEDQLTLEFKKLGIGV 194 (427)
T ss_pred HHhhhcccccCCCCcEEEEEeCCc--chHHHHHHHHHHcCCee
Confidence 443332 2356777887542 33344444455666655
No 498
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=22.83 E-value=5.4e+02 Score=22.97 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCCEEEcccccCCCCCCCCCchHHHHHHHHHhc
Q 024322 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (269)
Q Consensus 79 ~~l~~Al~~Gvn~~DtA~~Yg~g~~~~~~~se~~lG~al~~~ 120 (269)
+.++.|++.|=..+=.+.++|+ =++++.++...
T Consensus 121 e~l~~a~~~gkgvI~~t~H~gn---------wE~~~~~~~~~ 153 (314)
T PRK08943 121 EILEEARANGENVIFLVPHGWA---------IDIPAMLLASQ 153 (314)
T ss_pred HHHHHHHhCCCCEEEEEechhH---------HHHHHHHHHhc
Confidence 3456666665555555555665 44556666543
No 499
>PLN02231 alanine transaminase
Probab=22.82 E-value=7.2e+02 Score=24.26 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHcC-cccEEEecC--------ccHHHHHHHHHHHHhcCCCEeEEcccCCccC-CCcchhhHHHHHHH--
Q 024322 177 EGFIDGLGDAVEQG-LVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY-RKPEENGVKAACDE-- 244 (269)
Q Consensus 177 ~~~~~~L~~L~~~G-~ir~iGvS~--------~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~~~-- 244 (269)
++..+.+++.+.+| ++|.|=+.| ++.++++++++.|++.++.+..-.+-..+.. .......+.+.+.+
T Consensus 256 ~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g 335 (534)
T PLN02231 256 SELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMG 335 (534)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhc
Confidence 33333344444444 567666665 3457888888888777754443333222221 11111124444432
Q ss_pred ---cCCeEEEcccccCcc
Q 024322 245 ---LGITLIAYCPIAQGE 259 (269)
Q Consensus 245 ---~gi~via~spl~~G~ 259 (269)
.++.++....+..++
T Consensus 336 ~~~~~~~vi~l~S~SK~~ 353 (534)
T PLN02231 336 YGEKDISLVSFQSVSKGY 353 (534)
T ss_pred cccCCceEEEEeccCccc
Confidence 345566666666554
No 500
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=22.76 E-value=3.2e+02 Score=20.88 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 024322 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~i~~~~~~ 211 (269)
..++.+.|++|++.| ++-+=+||.+...++..++.
T Consensus 79 ~~~~~~~L~~l~~~~-~~~~i~Sn~~~~~~~~~l~~ 113 (176)
T PF13419_consen 79 YPGVRELLERLKAKG-IPLVIVSNGSRERIERVLER 113 (176)
T ss_dssp STTHHHHHHHHHHTT-SEEEEEESSEHHHHHHHHHH
T ss_pred hhhhhhhhhhccccc-ceeEEeecCCcccccccccc
Confidence 567899999998775 66667788888888877654
Done!