Query 024323
Match_columns 269
No_of_seqs 150 out of 1672
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2.5E-26 5.4E-31 208.6 28.7 251 10-267 9-282 (358)
2 PRK11272 putative DMT superfam 99.9 3.3E-21 7.1E-26 171.1 26.0 191 15-237 9-200 (292)
3 PRK11453 O-acetylserine/cystei 99.9 7.3E-21 1.6E-25 169.5 24.1 219 15-266 5-240 (299)
4 PRK11689 aromatic amino acid e 99.9 3.9E-21 8.5E-26 170.9 21.4 226 12-267 2-241 (295)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 8.1E-21 1.8E-25 165.2 22.6 181 26-238 1-182 (260)
6 PRK15430 putative chlorampheni 99.9 5.2E-20 1.1E-24 163.7 22.8 169 8-209 2-173 (296)
7 TIGR00688 rarD rarD protein. T 99.9 7.7E-20 1.7E-24 159.2 23.4 163 14-209 2-170 (256)
8 PRK10532 threonine and homoser 99.8 5.4E-18 1.2E-22 150.6 23.1 219 11-267 9-235 (293)
9 TIGR00817 tpt Tpt phosphate/ph 99.8 4.4E-17 9.6E-22 145.2 24.0 179 31-238 19-199 (302)
10 TIGR03340 phn_DUF6 phosphonate 99.8 1E-16 2.2E-21 141.6 20.6 167 16-211 3-170 (281)
11 PTZ00343 triose or hexose phos 99.7 1.1E-15 2.3E-20 139.1 23.3 197 13-238 48-253 (350)
12 PF06027 DUF914: Eukaryotic pr 99.7 4.1E-15 8.8E-20 133.3 22.7 206 15-239 14-221 (334)
13 COG0697 RhaT Permeases of the 99.6 6.4E-14 1.4E-18 122.8 22.3 185 12-223 5-191 (292)
14 PF00892 EamA: EamA-like trans 99.6 2.1E-15 4.6E-20 116.0 10.7 125 24-156 1-125 (126)
15 COG2510 Predicted membrane pro 99.6 1.5E-14 3.2E-19 109.8 11.0 135 14-156 3-138 (140)
16 TIGR00776 RhaT RhaT L-rhamnose 99.5 3.1E-12 6.6E-17 113.6 18.6 189 15-231 2-198 (290)
17 COG2962 RarD Predicted permeas 99.5 2E-11 4.3E-16 105.5 22.3 193 11-239 4-199 (293)
18 KOG4510 Permease of the drug/m 99.4 5.3E-14 1.2E-18 119.4 4.3 232 14-264 38-276 (346)
19 TIGR00950 2A78 Carboxylate/Ami 99.4 4.5E-12 9.8E-17 110.2 16.6 132 12-152 126-259 (260)
20 COG5006 rhtA Threonine/homoser 99.4 5.9E-11 1.3E-15 100.4 18.2 188 15-238 13-200 (292)
21 PRK10532 threonine and homoser 99.3 9.1E-11 2E-15 104.3 17.7 135 13-157 147-281 (293)
22 PRK11272 putative DMT superfam 99.3 8.4E-11 1.8E-15 104.4 16.6 136 13-156 149-284 (292)
23 PF13536 EmrE: Multidrug resis 99.3 3E-11 6.6E-16 92.2 10.2 103 48-157 2-106 (113)
24 PLN00411 nodulin MtN21 family 99.2 6E-10 1.3E-14 101.6 17.9 134 15-157 190-328 (358)
25 PRK11689 aromatic amino acid e 99.2 5.8E-10 1.3E-14 99.2 15.7 132 13-156 155-286 (295)
26 PRK11453 O-acetylserine/cystei 99.2 2E-09 4.4E-14 95.9 17.5 137 13-156 142-286 (299)
27 KOG2765 Predicted membrane pro 99.1 3.8E-10 8.2E-15 100.3 11.0 135 84-237 165-302 (416)
28 PF08449 UAA: UAA transporter 99.1 4.1E-08 8.8E-13 87.7 22.1 185 31-235 17-205 (303)
29 TIGR03340 phn_DUF6 phosphonate 99.1 1.2E-09 2.6E-14 96.4 11.4 134 13-154 143-280 (281)
30 TIGR00817 tpt Tpt phosphate/ph 99.0 4.5E-09 9.8E-14 93.7 13.2 140 12-157 143-293 (302)
31 PF04142 Nuc_sug_transp: Nucle 99.0 6.4E-08 1.4E-12 83.8 17.9 154 74-237 13-167 (244)
32 PRK15430 putative chlorampheni 98.9 1.1E-07 2.4E-12 84.6 15.6 132 17-156 152-284 (296)
33 COG0697 RhaT Permeases of the 98.9 2.1E-07 4.6E-12 81.4 17.0 133 13-156 153-286 (292)
34 PTZ00343 triose or hexose phos 98.8 3.1E-07 6.6E-12 83.8 17.0 138 12-156 192-347 (350)
35 KOG2766 Predicted membrane pro 98.8 3.1E-10 6.6E-15 96.2 -2.5 171 40-235 44-215 (336)
36 TIGR00776 RhaT RhaT L-rhamnose 98.8 1.2E-07 2.5E-12 84.3 13.5 130 12-156 150-287 (290)
37 PF03151 TPT: Triose-phosphate 98.7 9.1E-07 2E-11 70.6 15.0 133 15-154 1-150 (153)
38 KOG2234 Predicted UDP-galactos 98.6 6E-05 1.3E-09 67.3 25.5 209 14-238 15-237 (345)
39 COG5006 rhtA Threonine/homoser 98.6 7.1E-07 1.5E-11 75.9 12.7 134 13-155 147-280 (292)
40 PRK15051 4-amino-4-deoxy-L-ara 98.6 5.3E-07 1.2E-11 68.6 10.1 69 82-156 40-108 (111)
41 KOG1443 Predicted integral mem 98.4 2E-05 4.3E-10 69.0 15.2 170 43-239 45-222 (349)
42 KOG1441 Glucose-6-phosphate/ph 98.4 2.1E-06 4.5E-11 76.6 9.2 180 33-239 36-221 (316)
43 PRK02971 4-amino-4-deoxy-L-ara 98.3 2E-05 4.2E-10 61.5 12.9 118 14-156 2-121 (129)
44 PF06027 DUF914: Eukaryotic pr 98.3 1.7E-05 3.8E-10 71.5 14.0 138 11-156 165-304 (334)
45 KOG3912 Predicted integral mem 98.3 4.9E-05 1.1E-09 65.8 15.7 194 17-228 6-220 (372)
46 PRK13499 rhamnose-proton sympo 98.1 0.00061 1.3E-08 61.7 18.3 176 12-201 5-190 (345)
47 PF06800 Sugar_transport: Suga 98.0 0.0011 2.4E-08 57.9 17.5 126 75-221 42-171 (269)
48 TIGR00688 rarD rarD protein. T 97.8 0.00043 9.3E-09 60.1 13.2 105 18-126 150-255 (256)
49 PF06800 Sugar_transport: Suga 97.8 0.00053 1.2E-08 59.8 13.1 132 11-153 135-267 (269)
50 KOG1444 Nucleotide-sugar trans 97.8 0.0038 8.2E-08 55.3 18.4 178 31-237 29-210 (314)
51 KOG4314 Predicted carbohydrate 97.8 6.1E-05 1.3E-09 62.1 5.9 97 90-210 64-160 (290)
52 COG2962 RarD Predicted permeas 97.7 0.0025 5.5E-08 55.7 15.4 128 19-156 153-282 (293)
53 PF08449 UAA: UAA transporter 97.6 0.0024 5.2E-08 57.0 14.7 135 15-156 155-296 (303)
54 PF04657 DUF606: Protein of un 97.4 0.0049 1.1E-07 48.7 12.6 128 18-154 5-138 (138)
55 PF10639 UPF0546: Uncharacteri 97.3 0.00068 1.5E-08 51.4 6.1 110 20-155 2-112 (113)
56 PRK10650 multidrug efflux syst 97.3 0.011 2.4E-07 44.6 12.4 64 86-155 42-106 (109)
57 PRK09541 emrE multidrug efflux 97.3 0.0025 5.5E-08 48.2 8.6 67 84-156 35-102 (110)
58 COG2076 EmrE Membrane transpor 97.2 0.0022 4.8E-08 47.9 7.8 66 85-156 36-102 (106)
59 PRK10452 multidrug efflux syst 97.2 0.0024 5.3E-08 49.0 8.3 67 84-156 35-102 (120)
60 KOG2765 Predicted membrane pro 97.2 0.0046 9.9E-08 55.9 10.9 139 12-156 245-389 (416)
61 PRK11431 multidrug efflux syst 97.1 0.0049 1.1E-07 46.2 8.6 65 86-156 36-101 (105)
62 PF05653 Mg_trans_NIPA: Magnes 97.0 0.0054 1.2E-07 54.8 9.7 117 12-156 5-121 (300)
63 KOG4510 Permease of the drug/m 97.0 0.00052 1.1E-08 59.3 2.6 134 14-156 191-324 (346)
64 KOG1441 Glucose-6-phosphate/ph 97.0 0.0033 7.2E-08 56.3 7.8 138 11-156 160-306 (316)
65 PF00893 Multi_Drug_Res: Small 96.8 0.005 1.1E-07 45.1 6.5 57 85-147 35-92 (93)
66 KOG1580 UDP-galactose transpor 96.7 0.023 5E-07 48.4 10.6 129 88-235 94-223 (337)
67 KOG1581 UDP-galactose transpor 96.7 0.33 7.2E-06 43.0 17.6 172 42-234 50-222 (327)
68 COG4975 GlcU Putative glucose 96.6 0.00032 6.9E-09 59.8 -1.1 167 15-207 3-174 (288)
69 PRK13499 rhamnose-proton sympo 96.6 0.19 4.1E-06 45.7 16.3 144 11-156 171-340 (345)
70 COG5070 VRG4 Nucleotide-sugar 96.3 0.018 3.9E-07 48.7 7.4 171 44-238 38-209 (309)
71 PF07857 DUF1632: CEO family ( 96.2 0.07 1.5E-06 46.4 11.0 186 15-211 1-209 (254)
72 TIGR00803 nst UDP-galactose tr 96.2 0.026 5.5E-07 47.9 8.1 59 89-153 162-220 (222)
73 KOG1442 GDP-fucose transporter 96.2 0.032 6.9E-07 48.6 8.4 171 42-236 60-237 (347)
74 PF06379 RhaT: L-rhamnose-prot 95.9 0.33 7.1E-06 43.8 14.0 179 12-203 5-191 (344)
75 COG3238 Uncharacterized protei 95.8 0.24 5.2E-06 39.5 11.3 107 42-155 33-144 (150)
76 KOG1583 UDP-N-acetylglucosamin 95.2 0.095 2.1E-06 45.8 7.7 149 71-230 60-210 (330)
77 KOG2922 Uncharacterized conser 95.1 0.0077 1.7E-07 53.4 0.8 122 12-162 19-140 (335)
78 KOG1580 UDP-galactose transpor 94.4 0.13 2.8E-06 44.0 6.4 129 14-156 172-312 (337)
79 KOG1581 UDP-galactose transpor 94.3 0.71 1.5E-05 41.0 10.7 138 11-156 169-312 (327)
80 PF03151 TPT: Triose-phosphate 93.4 0.31 6.8E-06 38.3 6.7 54 186-239 1-60 (153)
81 PF00892 EamA: EamA-like trans 92.0 0.26 5.6E-06 36.9 4.2 42 195-238 1-42 (126)
82 COG4975 GlcU Putative glucose 91.0 0.035 7.6E-07 47.6 -1.7 134 12-155 150-283 (288)
83 PF04142 Nuc_sug_transp: Nucle 89.6 13 0.00028 32.2 13.2 124 12-146 112-242 (244)
84 KOG4831 Unnamed protein [Funct 89.6 1 2.2E-05 33.6 5.2 116 16-155 5-123 (125)
85 KOG1582 UDP-galactose transpor 89.1 3.5 7.5E-05 36.3 8.9 206 12-245 40-251 (367)
86 KOG1444 Nucleotide-sugar trans 88.1 8 0.00017 34.6 10.7 136 14-156 157-299 (314)
87 TIGR00803 nst UDP-galactose tr 88.0 5.6 0.00012 33.5 9.6 95 107-211 6-111 (222)
88 KOG1582 UDP-galactose transpor 86.7 6.8 0.00015 34.5 9.2 137 14-157 190-332 (367)
89 PF04657 DUF606: Protein of un 86.2 7.3 0.00016 30.6 8.6 81 187-267 3-90 (138)
90 COG5070 VRG4 Nucleotide-sugar 80.6 13 0.00028 31.8 8.3 109 41-156 183-295 (309)
91 PRK02237 hypothetical protein; 77.7 3.9 8.5E-05 30.6 3.9 38 113-156 67-104 (109)
92 PF02694 UPF0060: Uncharacteri 76.6 3.5 7.6E-05 30.8 3.4 39 112-156 64-102 (107)
93 COG3238 Uncharacterized protei 72.9 25 0.00053 28.1 7.5 55 185-239 5-59 (150)
94 COG2510 Predicted membrane pro 72.9 32 0.00069 26.8 7.8 51 186-237 4-54 (140)
95 KOG1443 Predicted integral mem 72.5 73 0.0016 28.7 12.7 137 12-155 162-313 (349)
96 KOG3912 Predicted integral mem 57.3 1.4E+02 0.0031 26.6 11.4 140 10-155 172-332 (372)
97 KOG1583 UDP-N-acetylglucosamin 56.8 1.5E+02 0.0031 26.5 10.7 132 14-156 164-313 (330)
98 KOG1442 GDP-fucose transporter 55.7 23 0.00051 31.3 4.7 138 13-157 184-327 (347)
99 COG1742 Uncharacterized conser 55.1 9.2 0.0002 28.4 1.9 38 114-157 67-104 (109)
100 PF04342 DUF486: Protein of un 47.3 1.2E+02 0.0026 22.7 8.4 68 82-155 33-106 (108)
101 COG3086 RseC Positive regulato 45.0 45 0.00097 26.4 4.4 29 99-127 68-96 (150)
102 PF10754 DUF2569: Protein of u 43.0 1.6E+02 0.0036 23.1 8.5 31 181-211 117-147 (149)
103 KOG2234 Predicted UDP-galactos 39.9 3E+02 0.0065 25.2 14.1 136 10-156 179-321 (345)
104 PRK10862 SoxR reducing system 38.1 51 0.0011 26.4 3.9 27 101-127 70-96 (154)
105 KOG2766 Predicted membrane pro 36.0 61 0.0013 28.5 4.2 135 12-156 164-298 (336)
106 PF06123 CreD: Inner membrane 34.3 4.1E+02 0.0088 25.1 10.7 25 186-210 352-376 (430)
107 PF04246 RseC_MucC: Positive r 33.3 55 0.0012 25.2 3.4 25 103-127 65-89 (135)
108 PF05653 Mg_trans_NIPA: Magnes 32.9 1.6E+02 0.0035 26.2 6.7 68 89-156 223-291 (300)
109 PF03209 PUCC: PUCC protein; 32.1 4.3E+02 0.0094 24.7 9.8 33 124-156 31-68 (403)
110 PF11361 DUF3159: Protein of u 29.2 2.8E+02 0.006 23.0 7.0 76 103-203 24-99 (187)
111 PF15108 TMEM37: Voltage-depen 29.1 2.7E+02 0.0059 22.5 6.5 74 141-227 91-166 (184)
112 CHL00196 psbY photosystem II p 22.5 1.8E+02 0.0039 17.2 3.6 22 185-206 6-27 (36)
113 COG4858 Uncharacterized membra 20.6 5.1E+02 0.011 21.7 7.3 14 22-35 108-121 (226)
114 PF05297 Herpes_LMP1: Herpesvi 20.3 34 0.00074 30.3 0.0 11 182-192 104-114 (381)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=2.5e-26 Score=208.64 Aligned_cols=251 Identities=23% Similarity=0.417 Sum_probs=192.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcc-cCCcCCHHHHHHHHHHHHHH
Q 024323 10 YLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERK-IRPKLTLALFLEIFVLSLVG 88 (269)
Q Consensus 10 ~~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 88 (269)
.++.++++.+++.++.++...++.|.+.+.+++|..+.++|+.+|+++++++++.++++ ..++.+++++..+.+.|+++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999899999999999999999999988765542 23344678888899999998
Q ss_pred HHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHH------hccccccccccchhHHHHHHHHHHHHHHHHHhcCCC
Q 024323 89 VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVL------RLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPA 162 (269)
Q Consensus 89 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~ 162 (269)
++++.+++.|++++++++++++.++.|+++.++++++ +|||++++ +++|++++++|+.+++..+++.
T Consensus 89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~ 161 (358)
T PLN00411 89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPR 161 (358)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcc
Confidence 6788899999999999999999999999999999999 58888886 9999999999999987543321
Q ss_pred CCCCCCCC-----ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 024323 163 ARNPGHPP-----IHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVA 237 (269)
Q Consensus 163 ~~~~~~~~-----~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 237 (269)
.....+++ .....++.+..+...|+.+.+.|+++||+|++++|+..+++++....+++++.++.+.+.++....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~ 241 (358)
T PLN00411 162 VFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE 241 (358)
T ss_pred cccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 10000000 0000011122344679999999999999999999999998876567778888888887777777665
Q ss_pred C-CCCCeeeecCchhhHHHH----------HHHHhhhcccc
Q 024323 238 R-KPADWRIGLNIDLWSTIY----------GVSWRIRQDLY 267 (269)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~~y----------~~~w~~~~~~~ 267 (269)
+ +..+|.......+++++| +++|+++|.|-
T Consensus 242 ~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga 282 (358)
T PLN00411 242 KNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGP 282 (358)
T ss_pred cCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4 233343323323334444 78889999874
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=3.3e-21 Score=171.15 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN 94 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 94 (269)
-.+..+...++||.+++++|...+ ++||..++++|+..++++++++...++++ ..+++++......|.++...++.
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999988 79999999999999999988876543322 23567778888888887777888
Q ss_pred HHHHHh-hccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 024323 95 MYFASL-RYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHI 173 (269)
Q Consensus 95 ~~~~al-~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 173 (269)
+++.+. +++++++++++.++.|+++.+++++ +|||++++ +++|++++++|+.++.. ++.
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~-~~~------------ 144 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS-GGN------------ 144 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc-Ccc------------
Confidence 999999 9999999999999999999999985 69999997 99999999999998852 111
Q ss_pred cCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 024323 174 QRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVA 237 (269)
Q Consensus 174 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 237 (269)
. ++...|++++++++++||.|++..||..++ ++...+.+++.++++.+.+.....+
T Consensus 145 -----~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (292)
T PRK11272 145 -----L-SGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSG 200 (292)
T ss_pred -----c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 122479999999999999999999997653 3456778888888888887776543
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.89 E-value=7.3e-21 Score=169.45 Aligned_cols=219 Identities=15% Similarity=0.220 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN 94 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 94 (269)
..+..++++++||.++++.|...+ ++||..++++|+.++++.++++. +++ +.+++ .....|+......+.
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~~~----~~~~~---~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--ARP----KVPLN---LLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--cCC----CCchH---HHHHHHHHHHHHHHH
Confidence 345688999999999999999998 79999999999999887665543 111 12222 234445555556667
Q ss_pred HHHHHhhc-cCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 024323 95 MYFASLRY-TSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHI 173 (269)
Q Consensus 95 ~~~~al~~-~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 173 (269)
+++.++++ .++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++. +++..
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~--~~~~~---------- 136 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLI--EDSLN---------- 136 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhc--cccCC----------
Confidence 88889998 58899999999999999999999999999997 9999999999999986 22110
Q ss_pred cCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC--chhHHHHHHHHHHHHHHHHHHHhcCCCC---CeeeecC
Q 024323 174 QRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPA--QLSLTTWMCFLGAAQSAVFTVIVARKPA---DWRIGLN 248 (269)
Q Consensus 174 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~ 248 (269)
+......|+.++++++++|++|++++|+..++.++ ......+++..+.+...+.....+++.. .+.....
T Consensus 137 -----~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (299)
T PRK11453 137 -----GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDM 211 (299)
T ss_pred -----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCH
Confidence 11112469999999999999999999998765532 2233444555554444444443443211 1111112
Q ss_pred chhhHHHH-----------HHHHhhhccc
Q 024323 249 IDLWSTIY-----------GVSWRIRQDL 266 (269)
Q Consensus 249 ~~~~~~~y-----------~~~w~~~~~~ 266 (269)
..|..++| ++.++++|.+
T Consensus 212 ~~~~~l~~l~i~~t~~~~~l~~~~l~~~~ 240 (299)
T PRK11453 212 TTILSLMYLAFVATIVGYGIWGTLLGRYE 240 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555555 6677777654
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.88 E-value=3.9e-21 Score=170.90 Aligned_cols=226 Identities=13% Similarity=0.050 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL 91 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (269)
+.++.+.++++.++||.+++..|...+ +++|..+.++|+.+++++++++. . ++ +.++++ ++....+.++...
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~--~-~~---~~~~~~-~~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV--G-FP---RLRQFP-KRYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc--c-cc---cccccc-HHHHHHHhHHHHH
Confidence 457788899999999999999999998 79999999999999999887652 1 11 112222 2233445555667
Q ss_pred HHHHHHHHhhc----cCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323 92 TLNMYFASLRY----TSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG 167 (269)
Q Consensus 92 ~~~~~~~al~~----~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~ 167 (269)
++.+++.++++ +++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. .+...+..+
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~~~~ 146 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLSLAE 146 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccchhhh
Confidence 78888888765 57788999999999999999999999999997 99999999999999862 111000000
Q ss_pred CCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCeeeec
Q 024323 168 HPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGL 247 (269)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 247 (269)
. ++ +..+...|+.+++.|+++||.|+++.||..++. ++.... ...+.+.+.+.....+.+..+++.
T Consensus 147 -----~--~~-~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~-- 212 (295)
T PRK11689 147 -----L--IN-NIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAMVFSL-- 212 (295)
T ss_pred -----h--hh-ccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCccccCCH--
Confidence 0 00 111224699999999999999999999987665 454432 233334444433333222111111
Q ss_pred CchhhHHHH----------HHHHhhhcccc
Q 024323 248 NIDLWSTIY----------GVSWRIRQDLY 267 (269)
Q Consensus 248 ~~~~~~~~y----------~~~w~~~~~~~ 267 (269)
..+..++| ++++++||.+-
T Consensus 213 -~~~~~l~~~~~~t~~~~~l~~~al~~~~a 241 (295)
T PRK11689 213 -PAIIKLLLAAAAMGFGYAAWNVGILHGNM 241 (295)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 12323332 78888888763
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.88 E-value=8.1e-21 Score=165.23 Aligned_cols=181 Identities=16% Similarity=0.196 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 024323 26 YTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSP 105 (269)
Q Consensus 26 w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 105 (269)
||.+++..|...+++.|+....+.|+..+.+++.++...+ .+++++.+....|.++..+++.+++.|++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 8999999999887568999999999999988877754321 244566778888888888999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhh
Q 024323 106 TFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLK 185 (269)
Q Consensus 106 ~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (269)
++++++.++.|+++++++++++|||++++ +++|++++++|+.++. .++ +.++...
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~------------------~~~~~~~ 128 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDG------------------NLSINPA 128 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCC------------------cccccHH
Confidence 99999999999999999999999999997 9999999999999985 221 1123358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323 186 GSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVAR 238 (269)
Q Consensus 186 G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 238 (269)
|+.++++++++|+.+.+..|+..++.+ ++...+.+++.++.+.+.+.....++
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP 182 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999887663 23345556788888888888775543
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.87 E-value=5.2e-20 Score=163.74 Aligned_cols=169 Identities=9% Similarity=0.008 Sum_probs=135.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccC--C-cCCHHHHHHHHHH
Q 024323 8 NVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIR--P-KLTLALFLEIFVL 84 (269)
Q Consensus 8 ~~~~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 84 (269)
+|.++.|+.++++++.++||.+++..|.. + +++|.++.++|+.++.+++.++...+++... + ..+++++. ....
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAV 78 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHH
Confidence 35677889999999999999999999985 5 6999999999999999887776544322111 0 11344432 3346
Q ss_pred HHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 024323 85 SLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAAR 164 (269)
Q Consensus 85 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~ 164 (269)
+.++.+.++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. ..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~-~~---- 147 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLW-TF---- 147 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHH-Hc----
Confidence 66667889999999999999999999999999999999999999999997 99999999999999862 10
Q ss_pred CCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024323 165 NPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLK 209 (269)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~ 209 (269)
++ . ..++++++++||.|++..|+..+
T Consensus 148 --------------~~-~----~~~~l~aa~~~a~~~i~~r~~~~ 173 (296)
T PRK15430 148 --------------GS-L----PIIALGLAFSFAFYGLVRKKIAV 173 (296)
T ss_pred --------------CC-c----cHHHHHHHHHHHHHHHHHHhcCC
Confidence 11 1 14688899999999999888654
No 7
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.87 E-value=7.7e-20 Score=159.23 Aligned_cols=163 Identities=12% Similarity=0.169 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccc-----CCcCCHH-HHHHHHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKI-----RPKLTLA-LFLEIFVLSLV 87 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~-----~~~~~~~-~~~~~~~~g~~ 87 (269)
|+++++++++++||.++++.|. .+ ++||.+++++|..++++++.++...+++++ .++.+++ ++......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5788999999999999999998 45 699999999999999988777654433211 1112222 33445666666
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323 88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG 167 (269)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~ 167 (269)
...++.+++.+++++++++++++.++.|+++++++++++|||++++ +++|++++++|+.++... +
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~-~------- 144 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL-K------- 144 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH-c-------
Confidence 5689999999999999999999999999999999999999999997 999999999999988621 0
Q ss_pred CCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024323 168 HPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLK 209 (269)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~ 209 (269)
++ . ..++++++++|+.|.+..|+..+
T Consensus 145 -----------~~-~----~~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 145 -----------GS-L----PWEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred -----------CC-c----hHHHHHHHHHHHHHHHHHhhcCC
Confidence 01 1 14678999999999999998654
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.82 E-value=5.4e-18 Score=150.60 Aligned_cols=219 Identities=11% Similarity=0.102 Sum_probs=159.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHH
Q 024323 11 LRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVT 90 (269)
Q Consensus 11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (269)
++.+++.+++++.++|+.+..+.|...+ +.||..+.++|+.+++++++++... ++ ++.+++++......|++. .
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~-~~~~~~~~~~R~~~a~l~l~~~~~~-~~---~~~~~~~~~~~~~~g~~~-~ 82 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFP-LVGAPGVTALRLALGTLILIAIFKP-WR---LRFAKEQRLPLLFYGVSL-G 82 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHhH-Hh---ccCCHHHHHHHHHHHHHH-H
Confidence 3478899999999999999999999998 6999999999999999988776422 11 124567777777888774 5
Q ss_pred HHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 024323 91 LTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPP 170 (269)
Q Consensus 91 ~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 170 (269)
..+.++++++++++++.++++.++.|+++.+++ +|++. +..++.++++|+.++. ..+..
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~~-------- 141 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQD-------- 141 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCCC--------
Confidence 778889999999999999999999999999876 35543 3445678899998875 22211
Q ss_pred ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCeeee----
Q 024323 171 IHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIG---- 246 (269)
Q Consensus 171 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---- 246 (269)
.+.....|++++++++++||.|.+..|+..++. ++... .+...++++.+.|.....++. ..++..
T Consensus 142 --------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 210 (293)
T PRK10532 142 --------VSHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-ALWHWSILPL 210 (293)
T ss_pred --------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-ccCCHHHHHH
Confidence 111224799999999999999999999988776 45554 466677777777766654321 112111
Q ss_pred -cCchhhHHH--H-HHHHhhhcccc
Q 024323 247 -LNIDLWSTI--Y-GVSWRIRQDLY 267 (269)
Q Consensus 247 -~~~~~~~~~--y-~~~w~~~~~~~ 267 (269)
...+..+.+ | +++++++|.+-
T Consensus 211 ~l~lgv~~t~~~~~l~~~~~~~~~a 235 (293)
T PRK10532 211 GLAVAILSTALPYSLEMIALTRLPT 235 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 111222222 2 88999998763
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.79 E-value=4.4e-17 Score=145.24 Aligned_cols=179 Identities=13% Similarity=0.108 Sum_probs=147.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh
Q 024323 31 FITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVAS 110 (269)
Q Consensus 31 ~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~ 110 (269)
+.=|...++-..|...++.|+..+.+...+. +..+.+++++.+++++++....|++. ++++.+.+.++++++++++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence 4557777732569999999999988776554 21122233457888999999999996 688899999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHH
Q 024323 111 VVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLT 190 (269)
Q Consensus 111 l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 190 (269)
+.++.|+++++++++++|||++++ ++.|++++++|+.+.. .++ .+ ....|++++
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~-----------------~~-~~~~G~~~~ 150 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTE-----------------LS-FNWAGFLSA 150 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCc-----------------cc-ccHHHHHHH
Confidence 999999999999999999999997 9999999999998753 111 11 224699999
Q ss_pred HHHHHHHHHHHHHHHHHHh--hCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323 191 IASSITWSAMYIMQAITLK--RYPAQLSLTTWMCFLGAAQSAVFTVIVAR 238 (269)
Q Consensus 191 l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 238 (269)
++|+++|+.|++..||..+ +. ++.+.+.+++..+++.+.|.....|+
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~ 199 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEG 199 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999877 55 68899999999999999999876654
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.76 E-value=1e-16 Score=141.57 Aligned_cols=167 Identities=12% Similarity=0.134 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-cccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323 16 LLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLE-RKIRPKLTLALFLEIFVLSLVGVTLTLN 94 (269)
Q Consensus 16 ~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 94 (269)
.++.++++++|+......|...+ +.++ ...++...+.+++.|+...+. ++.+++.+++++ .....+.++...++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHAD-KEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFW-LLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC-chhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhH-HHHHHHHHHHHHHHH
Confidence 46788999999999999997766 3344 347777777777777665432 222333344444 444445555678999
Q ss_pred HHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 024323 95 MYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQ 174 (269)
Q Consensus 95 ~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 174 (269)
+++.++++.++++++.+.++.|+++.+++++++|||++++ +++|++++++|+.++.. ++ .
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~--~----------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SR--F----------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-cc--c-----------
Confidence 9999999999999999999999999999999999999996 99999999999998862 11 0
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 024323 175 RNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRY 211 (269)
Q Consensus 175 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~ 211 (269)
.. ....|+.++++++++|+.|++..|+..++.
T Consensus 139 ----~~-~~~~g~~~~l~aal~~a~~~i~~k~~~~~~ 170 (281)
T TIGR03340 139 ----AQ-HRRKAYAWALAAALGTAIYSLSDKAAALGV 170 (281)
T ss_pred ----cc-cchhHHHHHHHHHHHHHHhhhhccccccch
Confidence 11 113688899999999999999988765443
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.73 E-value=1.1e-15 Score=139.13 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcccCCcC--CHHHHHHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGMN-PHVYVTYRHIVAGIAMFPFAYFLERKIRPKL--TLALFLEIFVLSLVGV 89 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~-p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~ 89 (269)
.|...+.+..-.+-.......|..++ ..+ |..++.+|++++.++...+.. .+.++.++. .+++++.++..|+++.
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~-~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALN-MLPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34455555555555666777888888 699 999999999999887554432 222222223 3457788999999987
Q ss_pred HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 024323 90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHP 169 (269)
Q Consensus 90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 169 (269)
.. +...+.++++++++.+.++.++.|+++++++++++|||++++ ++++++++++|+.+.+. ++
T Consensus 126 ~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~-------- 188 (350)
T PTZ00343 126 FV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE-------- 188 (350)
T ss_pred HH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc--------
Confidence 55 555779999999999999999999999999999999999997 99999999999999862 11
Q ss_pred CccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC------CchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323 170 PIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP------AQLSLTTWMCFLGAAQSAVFTVIVAR 238 (269)
Q Consensus 170 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~ 238 (269)
.+. ...|++++++|+++|+.++++.|+..++.+ ++.....++..+|+++++|+....|.
T Consensus 189 ---------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~ 253 (350)
T PTZ00343 189 ---------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG 253 (350)
T ss_pred ---------chh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112 247999999999999999999999877541 34456666688999999998876654
No 12
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.71 E-value=4.1e-15 Score=133.29 Aligned_cols=206 Identities=18% Similarity=0.250 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhc-ccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNHGMN-PHVYVTYRHIVAGIAMFPFAYFLER-KIRPKLTLALFLEIFVLSLVGVTLT 92 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~-p~~~~~~r~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~ 92 (269)
.+++.=..+++-+.+........+++.+ |....++-+..-+++..+....+++ +.+.+..+++|+++++.+++.. .+
T Consensus 14 ~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv-~a 92 (334)
T PF06027_consen 14 VLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV-EA 92 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH-HH
Confidence 3333333445555556666655544555 7777777776666665555444332 2222334456778888899985 88
Q ss_pred HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 024323 93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIH 172 (269)
Q Consensus 93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 172 (269)
+.+...|++|++.+.+.++..+.-+++++++++++|||.++. |++|++++++|+.+++..+.. ..
T Consensus 93 N~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~--~~------- 157 (334)
T PF06027_consen 93 NYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVL--SG------- 157 (334)
T ss_pred HHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccc--cc-------
Confidence 899999999999999999999999999999999999999995 999999999999998743211 11
Q ss_pred ccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323 173 IQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK 239 (269)
Q Consensus 173 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 239 (269)
+++.++.+...||+++++|++.||+++++.++..++. +..+...+.-++|.++..+.....|.+
T Consensus 158 --~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~ 221 (334)
T PF06027_consen 158 --SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERS 221 (334)
T ss_pred --ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehh
Confidence 1112455678999999999999999999999999988 577888888899999999888887764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.64 E-value=6.4e-14 Score=122.79 Aligned_cols=185 Identities=21% Similarity=0.328 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL 91 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (269)
........++..+.|+.+....|...++..++......|...+.+...+.....+ ....+...+ +.+....+.++...
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~ 82 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEP-RGLRPALRP-WLLLLLLALLGLAL 82 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc-ccccccccc-hHHHHHHHHHHHHH
Confidence 4456778888889999999999998873366777777799999888443332211 111111111 34566667777789
Q ss_pred HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHH-HHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 024323 92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAV-VLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPP 170 (269)
Q Consensus 92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 170 (269)
++.+++.++++++++.++.+.++.|+++.++++ +++|||++++ ++.|..+++.|+.++.. .+. ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~-~~~-~~------ 148 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILL-GGG-GG------ 148 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheec-CCC-cc------
Confidence 999999999999999999999999999999997 7779999997 99999999999999962 111 00
Q ss_pred ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHH-HHHH
Q 024323 171 IHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTT-WMCF 223 (269)
Q Consensus 171 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~ 223 (269)
+.. ...|+.++++++++|+++.+..|+.. +. ++..... ++..
T Consensus 149 --------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~ 191 (292)
T COG0697 149 --------GIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL 191 (292)
T ss_pred --------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH
Confidence 011 46899999999999999999999887 44 4445444 4443
No 14
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.64 E-value=2.1e-15 Score=116.00 Aligned_cols=125 Identities=21% Similarity=0.419 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024323 24 LSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYT 103 (269)
Q Consensus 24 ~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 103 (269)
++||.+.+..|...+ +.||...+.+|+..+.+ ++++....+++..+..+.+++......|.++..+++.+++.+++++
T Consensus 1 ~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK-KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhc-cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 469999999999998 69999999999999998 6666555554433457777888888889887789999999999999
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 104 SPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 104 ~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
+++.++.+.+++|+++.+++++++||+++++ +++|++++++|+.+++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 9999999999999874
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.59 E-value=1.5e-14 Score=109.82 Aligned_cols=135 Identities=17% Similarity=0.285 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCC-cCCHHHHHHHHHHHHHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP-KLTLALFLEIFVLSLVGVTLT 92 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 92 (269)
+..++.++++++|+...++.|...+ ++||...++.|-.+...++..+....++.+.. ....|.|..+.+.|+.+ .+.
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence 4678899999999999999999998 79999999999999999888877766653332 24777788888888664 699
Q ss_pred HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
+.+||.+++...++.+.-+-.+.|+++.+++++++|||++.+ +++|+++..+|++++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999997 9999999999998764
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.49 E-value=3.1e-12 Score=113.60 Aligned_cols=189 Identities=13% Similarity=0.092 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN 94 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 94 (269)
++++.++++++||...+..|... +.++.++. |..++.+++..+....++++ ...++.+..-+..|.+ ...++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence 46788999999999999999864 57777775 77778877765554433211 1123333334444444 568889
Q ss_pred HHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhH----HHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 024323 95 MYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAK----VLGTLVSLAGVTIMTVYKGPAARNPGHP 169 (269)
Q Consensus 95 ~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 169 (269)
+++.++++++.+.+..+.+ ++|++..+++.+++|||.+++ + ++|++++++|+.++.. .+ ..+.
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~-~~-~~~~---- 142 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSR-SK-DKSA---- 142 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEe-cc-cccc----
Confidence 9999999999999999888 888999999999999999997 8 9999999999888752 11 1110
Q ss_pred CccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHH---HHHHHHHHHHHHH
Q 024323 170 PIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLT---TWMCFLGAAQSAV 231 (269)
Q Consensus 170 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~---~~~~~~g~~~~~~ 231 (269)
+++ ...+..+|..++++++++|+.|.+..|+. + + +|.+.+ .+.+++++....+
T Consensus 143 -----~~~-~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~-~~~~~~~~~~~g~~~~~~~~~~ 198 (290)
T TIGR00776 143 -----GIK-SEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V-DGLSVLLPQAIGMVIGGIIFNL 198 (290)
T ss_pred -----ccc-cccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C-CcceehhHHHHHHHHHHHHHHH
Confidence 000 00233579999999999999999998875 2 4 577774 3344444444333
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.48 E-value=2e-11 Score=105.49 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=147.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccC--C-cCCHHHHHHHHHHHHH
Q 024323 11 LRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIR--P-KLTLALFLEIFVLSLV 87 (269)
Q Consensus 11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~ 87 (269)
+.+||++..+.+.+.||..+...|... +.++.++...|...+..+++.+....++.+. . ..+++.+..+...+..
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 356899999999999999999999964 5999999999999999998766555443211 1 1244455556666666
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323 88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG 167 (269)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~ 167 (269)
.+.++..|.++.++-.+-++++=.+..|++..+++.+++|||+++ .|+++++++.+||...+.-.|
T Consensus 82 -i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g------- 147 (293)
T COG2962 82 -IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG------- 147 (293)
T ss_pred -HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC-------
Confidence 578999999999999999999999999999999999999999999 599999999999999874222
Q ss_pred CCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323 168 HPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK 239 (269)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 239 (269)
+.+ ..++.=+++|+.|...-|+. + . ++.+=.+..+..-.+..+...+..+.+
T Consensus 148 ------------~lp-----wval~la~sf~~Ygl~RK~~-~-v-~a~~g~~lE~l~l~p~al~yl~~l~~~ 199 (293)
T COG2962 148 ------------SLP-----WVALALALSFGLYGLLRKKL-K-V-DALTGLTLETLLLLPVALIYLLFLADS 199 (293)
T ss_pred ------------CCc-----HHHHHHHHHHHHHHHHHHhc-C-C-chHHhHHHHHHHHhHHHHHHHHHHhcC
Confidence 112 44566678999999984432 2 2 455555566666666666555555444
No 18
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.45 E-value=5.3e-14 Score=119.44 Aligned_cols=232 Identities=14% Similarity=0.193 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTL 93 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 93 (269)
++.++..++ ..+....++.+...+ .||....-.|++.-.++..|..+++....+.+...| .++++.|+.|. .+.
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~-tgv 111 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGF-TGV 111 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhh-hHH
Confidence 345555555 555555555555554 799999999966666655554443332221122222 45678888875 556
Q ss_pred HHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 024323 94 NMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHI 173 (269)
Q Consensus 94 ~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 173 (269)
...|++++|.+-+.+.++.+..|.++++++|.++|||.++ ...+|..+.+.||++++ +.+...+++....
T Consensus 112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIv--RPpFlFG~~t~g~-- 181 (346)
T KOG4510|consen 112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIV--RPPFLFGDTTEGE-- 181 (346)
T ss_pred HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEe--cCCcccCCCcccc--
Confidence 6778899999999999999999999999999999999999 59999999999999997 5655444322111
Q ss_pred cCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHh-----cCCCCCeeeecC
Q 024323 174 QRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIV-----ARKPADWRIGLN 248 (269)
Q Consensus 174 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~ 248 (269)
+++ .-...+.|.+-++.+++.-|..+++.|++.|+.. ......+..+++.+...+..... .+...||.+..+
T Consensus 182 -~~s-~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~ 258 (346)
T KOG4510|consen 182 -DSS-QVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVN 258 (346)
T ss_pred -ccc-cccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEE
Confidence 111 1234467899999999999999999999988763 33333344445544443333222 223346666556
Q ss_pred chhhHHHH--HHHHhhhc
Q 024323 249 IDLWSTIY--GVSWRIRQ 264 (269)
Q Consensus 249 ~~~~~~~y--~~~w~~~~ 264 (269)
.+..+.+. +.+.++++
T Consensus 259 lGvfgfigQIllTm~lQi 276 (346)
T KOG4510|consen 259 LGVFGFIGQILLTMGLQI 276 (346)
T ss_pred ehhhhhHHHHHHHHHhhh
Confidence 66666665 55555543
No 19
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.45 E-value=4.5e-12 Score=110.15 Aligned_cols=132 Identities=18% Similarity=0.319 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNP--HVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGV 89 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p--~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (269)
+.++.++.++++++|+...+..|...+ +.++ .....+++.++.+++.+.....++.. ..+.++|......++++.
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 202 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPNP--QALSLQWGALLYLGLIGT 202 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHHHH
Confidence 457899999999999999999999886 5664 45555789999998888776544322 346677777888999988
Q ss_pred HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHH
Q 024323 90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGV 152 (269)
Q Consensus 90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv 152 (269)
.+++.+++.++++.+++.++.+.+++|+++.+++++++||+++++ ++.|..+.+.|+
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999996 999999999886
No 20
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.38 E-value=5.9e-11 Score=100.36 Aligned_cols=188 Identities=11% Similarity=0.088 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN 94 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 94 (269)
+++.++.+.+.-=...-+.|..+. ..+|.-.+.+|..+++++++++.. +.+.++++++|..+...|..- ..-+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~R----Pwr~r~~~~~~~~~~~yGvsL-g~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFP-LVGAAGVTALRLAIAALILLALFR----PWRRRLSKPQRLALLAYGVSL-GGMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHcc-ccChhhHHHHHHHHHHHHHHHHhh----HHHhccChhhhHHHHHHHHHH-HHHHH
Confidence 467777777777777888899888 699999999999999999887642 222347888888888888774 46788
Q ss_pred HHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 024323 95 MYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQ 174 (269)
Q Consensus 95 ~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 174 (269)
+||.+++++|-+.+..+-++.|+..+.++- +|.. +...+.+++.|+.++. ..++..
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~~--------d~vwvaLAvlGi~lL~-p~~~~~----------- 142 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RRLR--------DFVWVALAVLGIWLLL-PLGQSV----------- 142 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhc----cchh--------hHHHHHHHHHHHHhhe-eccCCc-----------
Confidence 999999999999999999999998887642 2222 4556667888998885 222211
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323 175 RNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVAR 238 (269)
Q Consensus 175 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 238 (269)
..-...|..+++.++.||+.|.+..||..+.. +..+-+...+.+++++..|+.....+
T Consensus 143 -----~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag 200 (292)
T COG5006 143 -----WSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAG 200 (292)
T ss_pred -----CcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcc
Confidence 12224899999999999999999999988755 45677888899999999999975544
No 21
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.34 E-value=9.1e-11 Score=104.26 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLT 92 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 92 (269)
..+.++.++++++|+.+.+..|...+ +.++..... ...++++++.++...... ....+...+...+..|+++..++
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999876 578877654 445666666666554332 12245555556678999999999
Q ss_pred HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323 93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (269)
Q Consensus 93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 157 (269)
+.++++++++.+++.++.+.+++|+++.++++++++|+++.. +++|.++.++|+.....
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999995 99999999999999863
No 22
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.32 E-value=8.4e-11 Score=104.42 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLT 92 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 92 (269)
..+.++.++++++|+...+..|.... -++...+.++..++++.+.++....+.......+.+.|......++++..++
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999998653 3456677888888888887776544322111235677888899999998999
Q ss_pred HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
+.+|+.++++.++++++.+.+++|+++++++++++||+++.. +++|.++.+.|+.++.
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999995 9999999999999986
No 23
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.29 E-value=3e-11 Score=92.25 Aligned_cols=103 Identities=19% Similarity=0.313 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHH
Q 024323 48 TYRHIVAGIAMFPFAYFLERKI--RPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVV 125 (269)
Q Consensus 48 ~~r~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~ 125 (269)
.+|+..+.+++..+...+++.. .+..+.+.+.+....|+++...++.+++.|+++.+ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5899999999888777644321 12234455566777788877789999999999999 58889999999999999999
Q ss_pred HhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323 126 LRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (269)
Q Consensus 126 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 157 (269)
++|||++++ ++.|++++++|+.++..
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 999999997 99999999999999973
No 24
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.24 E-value=6e-10 Score=101.62 Aligned_cols=134 Identities=9% Similarity=0.166 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcccC----CcCCHHHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNHGMNP-HVYVTYRHIVAGIAMFPFAYFLERKIR----PKLTLALFLEIFVLSLVGV 89 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p-~~~~~~r~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~ 89 (269)
+.+++++++++|+...+..|...+ ++++ ...+++....+.+.+.+.....++... ...+.. ...++..+++ .
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-T 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-H
Confidence 678899999999999999999877 4655 456667766666666555444332111 112222 2335556665 4
Q ss_pred HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323 90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (269)
Q Consensus 90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 157 (269)
.+++.+|++++++.+|+.+++..+++|++++++++++++|+++.. +++|.++.+.|+.++..
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999995 99999999999999863
No 25
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.21 E-value=5.8e-10 Score=99.20 Aligned_cols=132 Identities=11% Similarity=0.121 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLT 92 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 92 (269)
..+.+++++++++|+.+.+..|...+ +.++..... ..+.+.+.+.....+ ......+.+.|......++ ...++
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~ 228 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFG 228 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHH
Confidence 34789999999999999999999765 578765432 233333333333322 1122356677777777775 56789
Q ss_pred HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
+.+|+.++++.+++.++.+.+++|+++.++++++++|+++.. +++|.++.+.|+.+..
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 999999999999999999999999999999999999999995 9999999999998875
No 26
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.17 E-value=2e-09 Score=95.89 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHhhccc-----CCcCCHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGMN---PHVYVTYRHIVAGIAMFPFAYFLERKI-----RPKLTLALFLEIFVL 84 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~---p~~~~~~r~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 84 (269)
..+.++.++++++|+...+..|...++ .+ ......+....+.+.+.......+... ....+.+.|..+++.
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 368899999999999999999997642 33 233344444444443333333222211 123567788889999
Q ss_pred HHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 85 SLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 85 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
|+++..+++.+|+.++++.++++++.+.+++|+++.++++++++|+++.. +++|.++.++|+.+..
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999995 9999999999998875
No 27
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.14 E-value=3.8e-10 Score=100.34 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 024323 84 LSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAA 163 (269)
Q Consensus 84 ~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~ 163 (269)
...+ -+++++.+..++++++++..+++.++.-+|+..++.++.+||++.. +++++.+.++|+++++. ++..
T Consensus 165 fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~--~~s~ 235 (416)
T KOG2765|consen 165 FCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTM--GDSK 235 (416)
T ss_pred HHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEe--cccc
Confidence 3444 4688999999999999999999999999999999999999999995 99999999999999973 2111
Q ss_pred CCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC---CchhHHHHHHHHHHHHHHHHHHHhc
Q 024323 164 RNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP---AQLSLTTWMCFLGAAQSAVFTVIVA 237 (269)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~ 237 (269)
+. + +..+.+...|+++++++|+.||+|+++.||-..+.+ +......+.-++..+++.|...+.+
T Consensus 236 ~~---------~-~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~ 302 (416)
T KOG2765|consen 236 QN---------S-DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD 302 (416)
T ss_pred cc---------c-cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11 1 113445579999999999999999999998877663 2222233333455566666666543
No 28
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.09 E-value=4.1e-08 Score=87.70 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=138.2
Q ss_pred HHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchh
Q 024323 31 FITEASFN-HGMN--PHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTF 107 (269)
Q Consensus 31 ~~~k~~~~-~~~~--p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 107 (269)
+..+.... +.-+ |..+++.++....+.-.+.....+++.. ++..+..+...+++. .++..+-+.+++|++...
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~ 92 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS---RKIPLKKYAILSFLF-FLASVLSNAALKYISYPT 92 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC---CcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHH
Confidence 44454443 2334 8899999998888876665444331222 222234556667664 578889999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHH
Q 024323 108 VASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGS 187 (269)
Q Consensus 108 a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 187 (269)
-.++-...|+.+++++.+++|+|.+++ ++.++++..+|+.+....+...... ++....+...|+
T Consensus 93 ~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~----------~~~~~~~~~~G~ 156 (303)
T PF08449_consen 93 QIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS----------SNSSSFSSALGI 156 (303)
T ss_pred HHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc----------cccccccchhHH
Confidence 999999999999999999999999996 9999999999999986422211110 000112223499
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHH
Q 024323 188 FLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVI 235 (269)
Q Consensus 188 ~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 235 (269)
.+.+++.++.|...+.+++..++++ ++.+.+++...++.+...+....
T Consensus 157 ~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 157 ILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876 77888999999999988877776
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.07 E-value=1.2e-09 Score=96.44 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPH----VYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVG 88 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~----~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (269)
.++..+.++++++|+.+.+..|...+ +.++. ....+.....++.+.+.....+.+... .....+......+.+.
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMF-PYARQILPSATLGGLM 220 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhccchh-hhHHHHHHHHHHHHHH
Confidence 45777889999999999998887643 34442 233333333322222222211221111 1222334556667676
Q ss_pred HHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHH
Q 024323 89 VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTI 154 (269)
Q Consensus 89 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 154 (269)
..+++.++++++++.+++.++.+.+++|+++.+++++++||+++.+ +++|.++.++|+.+
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 7889999999999999999999999999999999999999999996 99999999999976
No 30
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.02 E-value=4.5e-09 Score=93.65 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcC---------CH-HHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNH-GMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL---------TL-ALFLE 80 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~-~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~---------~~-~~~~~ 80 (269)
+..|.++.++++++|+...+..|...++ ++||...+.+....+++.+.|+....+....... .. ..+..
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 3458899999999999999999987641 4899999999999999998888765432111000 00 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323 81 IFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (269)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 157 (269)
.+..+.......+.+++.+++++++..+++..++.|++++++++++++|+++.+ +++|.+++++|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 222333223334457778999999999999999999999999999999999996 99999999999999863
No 31
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.97 E-value=6.4e-08 Score=83.76 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH
Q 024323 74 TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVT 153 (269)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 153 (269)
++++..++..=+++ ..+.+.+.+.++++.+|+.-.++..+..++|++++++++|+|++++ ||.++.+.++|+.
T Consensus 13 ~~~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence 45566677777777 4689999999999999999999999999999999999999999997 9999999999999
Q ss_pred HHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHH
Q 024323 154 IMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVF 232 (269)
Q Consensus 154 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 232 (269)
++-. ++... .+.++..+.+ .+....+...|.++.+.++++-+...++..|..|+.+ +...........|.++.++.
T Consensus 86 lv~~-~~~~~-~~~~~~~~~~-~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~ 162 (244)
T PF04142_consen 86 LVQL-SSSQS-SDNSSSSSVH-HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA 162 (244)
T ss_pred eeec-CCccc-cccccccccc-cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 9852 22111 0000000000 0112345578999999999999999999999999865 34444555566677776666
Q ss_pred HHHhc
Q 024323 233 TVIVA 237 (269)
Q Consensus 233 ~~~~~ 237 (269)
....+
T Consensus 163 ~~~~~ 167 (244)
T PF04142_consen 163 LLLSD 167 (244)
T ss_pred Hhccc
Confidence 54433
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.86 E-value=1.1e-07 Score=84.58 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHH
Q 024323 17 LLMVLAQLSYTFLYFITEASFNHG-MNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNM 95 (269)
Q Consensus 17 l~~l~a~~~w~~~~~~~k~~~~~~-~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 95 (269)
...++++++|+.+.+..|....++ .++.....+....+.....+.... ........+...+......|+. ..+++.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~ 229 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIV-TTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 356788999999999988864311 223333444444444332222110 0000111223333444555654 5689999
Q ss_pred HHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 96 YFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 96 ~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
++.++++.+++.++.+.+++|+++.++++++++|+++.+ +++|.++.++|+.++.
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 9999999999998876
No 33
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.85 E-value=2.1e-07 Score=81.36 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVT-YRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL 91 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~-~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (269)
..+..+.+.+++.|+.+.+..|... +.++..... +.+..+.....+.. ..... .+...+.+......|+++...
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999876 367766666 44442222222221 11111 345677788889999998878
Q ss_pred HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
++.+++.++++.+++.++.+.++.|++..++++++++|+++.+ +++|+++.+.|+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999996 9999999999999885
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.81 E-value=3.1e-07 Score=83.77 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcccCC--------cCCHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNH------GMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP--------KLTLAL 77 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~------~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~--------~~~~~~ 77 (269)
+..|.+++++++++|+...+..|...++ +.++.....+....++++++|+....+..... ..+...
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 4568999999999999999999998752 25677777777888998888887644321100 000101
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH
Q 024323 78 FLEIFVLSLVGVTLTLNMYF----ASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVT 153 (269)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~----~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 153 (269)
+...... ++...+.+.++. .+++++++...++..++.|+++.++++++++|+++.. +++|.++++.|+.
T Consensus 272 ~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~ 344 (350)
T PTZ00343 272 KGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGAL 344 (350)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHH
Confidence 1112222 222234444444 6999999999999999999999999999999999995 9999999999998
Q ss_pred HHH
Q 024323 154 IMT 156 (269)
Q Consensus 154 ll~ 156 (269)
+..
T Consensus 345 lYs 347 (350)
T PTZ00343 345 LYS 347 (350)
T ss_pred HHh
Confidence 864
No 35
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.80 E-value=3.1e-10 Score=96.20 Aligned_cols=171 Identities=19% Similarity=0.266 Sum_probs=136.1
Q ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHH
Q 024323 40 GMN-PHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAV 118 (269)
Q Consensus 40 ~~~-p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~ 118 (269)
++| |...++..+..-+++--++..++.+ . -+..|..+++++++.+ -++.+...|.||++.+.+.++-.-.-..
T Consensus 44 ~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~--~---~~~~~~hYilla~~DV-EaNy~vV~AyQyTsmtSi~lLDcwaip~ 117 (336)
T KOG2766|consen 44 GINAPTSQTFLNYVLLALVYGPIMLFRRK--Y---IKAKWRHYILLAFVDV-EANYFVVKAYQYTSMTSIMLLDCWAIPC 117 (336)
T ss_pred cCCCccHHHHHHHHHHHHHHhhHHHhhhH--H---HHHHHHHhhheeEEee-cccEEEeeehhhcchHHHHHHHHhhhHH
Confidence 455 7778888888888887777665432 1 1222345788888875 6677788999999999999998888888
Q ss_pred HHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHH
Q 024323 119 TFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWS 198 (269)
Q Consensus 119 ~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a 198 (269)
+.+++|+++|.|-+. .|+.|++++++|+..+++++-.. .+ ..++.+..+|+++.+++|.+||
T Consensus 118 v~~lsw~fLktrYrl------mki~gV~iCi~GvvmvV~sDV~a--gd----------~aggsnp~~GD~lvi~GATlYa 179 (336)
T KOG2766|consen 118 VLVLSWFFLKTRYRL------MKISGVVICIVGVVMVVFSDVHA--GD----------RAGGSNPVKGDFLVIAGATLYA 179 (336)
T ss_pred HHHHHHHHHHHHHhh------heeeeEEeEecceEEEEEeeecc--cc----------ccCCCCCccCcEEEEecceeee
Confidence 899999999999999 59999999999999998543221 11 1145666799999999999999
Q ss_pred HHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHH
Q 024323 199 AMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVI 235 (269)
Q Consensus 199 ~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 235 (269)
+.++....+.|+. +..+++....++|+++..+....
T Consensus 180 VSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i~ 215 (336)
T KOG2766|consen 180 VSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFIF 215 (336)
T ss_pred eccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999987 57888998999999999888443
No 36
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.79 E-value=1.2e-07 Score=84.31 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHI---VAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVG 88 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (269)
.+|+++..+++++.++.+....|.. +.||...++.... +++.++.+.. + + .++ .+.+..+.....|++
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~-~~~~~~~~~~~~Gi~- 220 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKP-LKKYAILLNILPGLM- 220 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-c-ccc-hHHHHHHHHHHHHHH-
Confidence 3679999999999999999999975 4788888555443 3444333322 1 1 112 223333344558888
Q ss_pred HHHHHHHHHHHhh-ccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHH----HHHHHHHHHHHHHH
Q 024323 89 VTLTLNMYFASLR-YTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKV----LGTLVSLAGVTIMT 156 (269)
Q Consensus 89 ~~~~~~~~~~al~-~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~ll~ 156 (269)
..+++.+|+.+.+ +.+++.++.+...+|+...+++++++||+.+++ ++ +|.++.+.|+.++.
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 5799999999999 999999999999999999999999999999997 88 99999999998875
No 37
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.71 E-value=9.1e-07 Score=70.58 Aligned_cols=133 Identities=17% Similarity=0.301 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcccCC----cC-------CHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNH------GMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP----KL-------TLAL 77 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~------~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~----~~-------~~~~ 77 (269)
|.++++.+.++-+...+..|...++ +.++.....+....+.+++++.....+..... .. ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 3567889999999999999987754 68999999999999999999987776543211 01 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHH
Q 024323 78 FLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTI 154 (269)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 154 (269)
+..+...|+++ ...+...+..+++++|...+++..+-.+++.++++++++|+++.+ +++|.+++++|+.+
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 45566667775 578889999999999999999999999999999999999999996 99999999999875
No 38
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.64 E-value=6e-05 Score=67.35 Aligned_cols=209 Identities=13% Similarity=0.107 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcc----cCCc------CCHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFNHG---MNPHVYVTYRHIVAGIAMFPFAYFLERK----IRPK------LTLALFLE 80 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~---~~p~~~~~~r~~~a~l~l~~~~~~~~~~----~~~~------~~~~~~~~ 80 (269)
.-.+.++...+.++......|..-..+ ..|...++.--.+-.++...+.+...++ ..+. ..+++..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 344566677888999999999876544 5677777777777777766665554321 1111 13334445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcC
Q 024323 81 IFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKG 160 (269)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~ 160 (269)
...=+++ .++.+.++|.++.+.+++.-.+...+--+.|+++..+++++|++++ ||.+.++..+|+.++-. ..
T Consensus 95 ~~vPa~i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~-~~ 166 (345)
T KOG2234|consen 95 VSVPALI-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQL-PS 166 (345)
T ss_pred HHHHHHH-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhc-cC
Confidence 5555556 4678889999999999999999999999999999999999999996 99999999999999841 11
Q ss_pred CCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323 161 PAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVAR 238 (269)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 238 (269)
+.... ..++ ....+...|....+.++.+-+...++..++.|+.. +.+..+.-..++|.++.....+..+.
T Consensus 167 ~~~~~-------a~~~-~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~ 237 (345)
T KOG2234|consen 167 LSPTG-------AKSE-SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG 237 (345)
T ss_pred CCCCC-------ccCC-CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 11111 0101 13456678999999999999999999999988754 33333444456676666666655443
No 39
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.64 E-value=7.1e-07 Score=75.91 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLT 92 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 92 (269)
-.+..+.+.+..+|+.+.+..|.+.+ ..+-..-+..-+.+++++.+|+-.-...... .+++-...-...|+++..+.
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l--~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPAL--FSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhh--cChHHHHHHHHHHHHhcccc
Confidence 36788999999999999999999875 4677788888999999999998764433222 45565566778899999999
Q ss_pred HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323 93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
|.+-..++++.|...-+++++++|.+.++.++++++|+++.. ||.++...+++..=.
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~ 280 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS 280 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999996 999999887776543
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.60 E-value=5.3e-07 Score=68.56 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 82 FVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 82 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
...++++..+.+.++..++++.|.+.+..+.++.|+++.+++++++|||++.+ +++|+.++++|+.++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 34455777889999999999999999999999999999999999999999997 9999999999999874
No 41
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.38 E-value=2e-05 Score=68.98 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccc---CCcCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHH
Q 024323 43 PHVYVTYRHIVAGIAMFPFAYFLERKI---RPKLTLALFL-EIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAV 118 (269)
Q Consensus 43 p~~~~~~r~~~a~l~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~ 118 (269)
|+..+.+..++=.++-...-...+++. +....|++.. +..-.|+. .++.-.+..++++|++.+.-++.=+..++|
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHH
Confidence 788888877665554433222222211 1245666544 34555665 468888999999999999999999999999
Q ss_pred HHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHH
Q 024323 119 TFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWS 198 (269)
Q Consensus 119 ~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a 198 (269)
+.+++.++.-||+++. -..-+++..+|+++++ +++ .+.+ ..|..+.+.|+++-+
T Consensus 124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~Ks------------------Tqf~-i~Gf~lv~~aS~~sG 177 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKS------------------TQFN-IEGFFLVLAASLLSG 177 (349)
T ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecc------------------ccee-ehhHHHHHHHHHhhh
Confidence 9999999999999994 6777777788888876 332 1222 479999999999999
Q ss_pred HHHHHHHHHHhhCC----CchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323 199 AMYIMQAITLKRYP----AQLSLTTWMCFLGAAQSAVFTVIVARK 239 (269)
Q Consensus 199 ~~~v~~k~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~ 239 (269)
+--...+.+.|+.| +|........-.-.+.++|..+.+|++
T Consensus 178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 88888888877754 566666655555666677888888874
No 42
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.36 E-value=2.1e-06 Score=76.60 Aligned_cols=180 Identities=15% Similarity=0.118 Sum_probs=137.6
Q ss_pred HHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh
Q 024323 33 TEASFN--HGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVAS 110 (269)
Q Consensus 33 ~k~~~~--~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~ 110 (269)
-|..++ ..--|..++..+...+.+.++..-..+..+..+..++..+..++..|++. +++..+-..++++.+++....
T Consensus 36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q~ 114 (316)
T KOG1441|consen 36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQT 114 (316)
T ss_pred eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHHHH
Confidence 355555 22348888888777777776655443322222222445567788888885 588889999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHH
Q 024323 111 VVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLT 190 (269)
Q Consensus 111 l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 190 (269)
+=.++|.++.++++++.+|+.+.+ .++.++....||.+.+. ++ .+.+ ..|...+
T Consensus 115 iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--~e-----------------~~fn-~~G~i~a 168 (316)
T KOG1441|consen 115 IKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--TE-----------------LSFN-LFGFISA 168 (316)
T ss_pred HHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee--cc-----------------cccc-HHHHHHH
Confidence 999999999999999999999996 78888888888888752 11 2234 4899999
Q ss_pred HHHHHHHHHHHHHHHHHHh--hCC-CchhHHHHHHHHHHHHHH-HHHHHhcCC
Q 024323 191 IASSITWSAMYIMQAITLK--RYP-AQLSLTTWMCFLGAAQSA-VFTVIVARK 239 (269)
Q Consensus 191 l~aa~~~a~~~v~~k~~~~--~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 239 (269)
+.+.+..+..++++|+..+ +.. +++....++.-++...++ |.....|++
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~ 221 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGN 221 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccc
Confidence 9999999999999999985 332 788888888888888888 777665554
No 43
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.33 E-value=2e-05 Score=61.54 Aligned_cols=118 Identities=20% Similarity=0.256 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTL 93 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 93 (269)
+++++++...++-+..-++.|...+ +.+........ ...+. . . . .+ ...+..|+++..+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~-~~g~~~~~~~~--~~~~~----~-~-----~--~p----~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMS-RLPLLSHAWDF--IAALL----A-F-----G--LA----LRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh-hCCCccchhHH--HHHHH----H-H-----h--cc----HHHHHHHHHHHHHHH
Confidence 3567777787888888899998876 34433322211 00000 0 0 0 01 124678888889999
Q ss_pred HHHHHHhhccCchhhhhhhhhhHHHHHHHHHH--HhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 94 NMYFASLRYTSPTFVASVVNTVAAVTFVIAVV--LRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 94 ~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
.+|..++++.+.+.+..+.+..+.++.+.++. ++||+++.+ +++|+++.++|+.++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888885 899999996 9999999999999985
No 44
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.31 E-value=1.7e-05 Score=71.46 Aligned_cols=138 Identities=14% Similarity=0.065 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCC--cCCHHHHHHHHHHHHHH
Q 024323 11 LRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP--KLTLALFLEIFVLSLVG 88 (269)
Q Consensus 11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~ 88 (269)
++.+|-++++.+++++|.+.+..+...+ +.|+.++..+--+.+.++..+.....+++... +++.+....++.. .++
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~-~~~ 242 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY-ALC 242 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH-HHH
Confidence 4568899999999999999999999887 58888888777777777766665555554333 3444443333333 334
Q ss_pred HHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 89 VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 89 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
.+..+.+.-..+++++|+...+=..+..+++.+++.+++|+++++. .++|.++..+|.++..
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYN 304 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEE
Confidence 4567777788899999998888888899999999999999999994 9999999999999875
No 45
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.30 E-value=4.9e-05 Score=65.85 Aligned_cols=194 Identities=15% Similarity=0.182 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---CCC----ChHHHHHHHHHHHHHHHHHHHHHhhcccCCc-------------CCHH
Q 024323 17 LLMVLAQLSYTFLYFITEASFN---HGM----NPHVYVTYRHIVAGIAMFPFAYFLERKIRPK-------------LTLA 76 (269)
Q Consensus 17 l~~l~a~~~w~~~~~~~k~~~~---~~~----~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~-------------~~~~ 76 (269)
++.++-...=+.+.+++|.+-+ ++- +|+..+..-++.=+++++.+..++.+...+. .+.+
T Consensus 6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~ 85 (372)
T KOG3912|consen 6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN 85 (372)
T ss_pred hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence 3344444555677788887521 122 4777777777777777777666655422210 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 77 LFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
. ...+.=+++.. .+..+.|.|+.+++++.-.++-...-+|+.+++.-+++++++.+ ||+|+.....|++++.
T Consensus 86 p-~lfl~Pal~Di-~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 86 P-VLFLPPALCDI-AGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVG 157 (372)
T ss_pred c-ceecChHHHHH-hhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheee
Confidence 1 11222455554 56678889999999999999999999999999999999999997 9999999999999884
Q ss_pred HhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHH
Q 024323 157 VYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQ 228 (269)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~ 228 (269)
..+-... .++ . ..-.+.+.|+.+.+.|=+.-|.-.++..|..++.. +|.....+.-++|.++
T Consensus 158 ~~d~~~~---~~p-~------~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~ 220 (372)
T KOG3912|consen 158 SLDVHLV---TDP-Y------TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVI 220 (372)
T ss_pred eeecccc---cCC-c------cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHH
Confidence 2111110 000 0 01245578999999999999999999999888865 8899999998888544
No 46
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.06 E-value=0.00061 Score=61.70 Aligned_cols=176 Identities=15% Similarity=0.149 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHHHHHHH--HHHhhcc---cCCcCCHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHI-VAGIAMFPF--AYFLERK---IRPKLTLALFLEIFVLS 85 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~-~a~l~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~g 85 (269)
..-+++.++++.++||..++-.|.. + ..|-..+ +.-.. ++.+ +.|+ .....+. .....+.+.+..-++.|
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k-~w~wE~~-W~v~gi~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-K-KWSWETM-WSVGGIFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-C-CCchhHH-HHHHHHHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 4568999999999999999999994 3 4553333 21111 1111 1111 1111111 11225666767777778
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhh-hhhHHHHHHHHHHHhcccc---ccccccchhHHHHHHHHHHHHHHHHHhcCC
Q 024323 86 LVGVTLTLNMYFASLRYTSPTFVASVV-NTVAAVTFVIAVVLRLETL---DLRNARGMAKVLGTLVSLAGVTIMTVYKGP 161 (269)
Q Consensus 86 ~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~P~~~~i~a~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~ 161 (269)
.+- .+++..++.++++.+.+.+.-+. .++-+++.++..++++|-. +.. ....-.+|+++.++|+.+... .+.
T Consensus 81 ~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~-Ag~ 156 (345)
T PRK13499 81 ALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGR-AGQ 156 (345)
T ss_pred HHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHH-hhh
Confidence 775 58999999999999999887774 4888999999999998754 221 123478899999999999863 111
Q ss_pred CCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHH
Q 024323 162 AARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMY 201 (269)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 201 (269)
..+. +.+.|.....+..+|...++++.+.+++|+
T Consensus 157 ~k~~------~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 157 LKER------KMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred hccc------ccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 1000 000000133566799999999999999999
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.96 E-value=0.0011 Score=57.88 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhH---HHHHHHHHH
Q 024323 75 LALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAK---VLGTLVSLA 150 (269)
Q Consensus 75 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~---~~g~~l~~~ 150 (269)
.+.+...++.|++- .+++...+.+.++.+.+.+.-+.. ++-+.+.++++++++|--+.+ .. .+++++.++
T Consensus 42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~-----~~~~G~~Al~liii 115 (269)
T PF06800_consen 42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTT-----QKIIGFLALVLIII 115 (269)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcc-----hHHHHHHHHHHHHH
Confidence 36667777888885 589999999999999999998875 666779999999999988875 22 236677777
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHH
Q 024323 151 GVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWM 221 (269)
Q Consensus 151 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~ 221 (269)
|+.+... +.+..+ +..+..+...|....+++.+.|..|.+..|.. + . ++.+...-+
T Consensus 116 Gv~lts~-~~~~~~-----------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-~-~-~~~~~~lPq 171 (269)
T PF06800_consen 116 GVILTSY-QDKKSD-----------KSSSKSNMKKGILALLISTIGYWIYSVIPKAF-H-V-SGWSAFLPQ 171 (269)
T ss_pred HHHHhcc-cccccc-----------ccccccchhhHHHHHHHHHHHHHHHHHHHHhc-C-C-ChhHhHHHH
Confidence 8877652 221111 00123455689999999999999999996652 2 2 555555444
No 48
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.85 E-value=0.00043 Score=60.09 Aligned_cols=105 Identities=9% Similarity=0.051 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCc-CCHHHHHHHHHHHHHHHHHHHHHH
Q 024323 18 LMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPK-LTLALFLEIFVLSLVGVTLTLNMY 96 (269)
Q Consensus 18 ~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 96 (269)
..+.++++|+.+.+..|...+ .++........ ....+..+............ ...++|...+..|++ ..+++.++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~ 225 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAF 225 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHH
Confidence 567889999999999988653 23322222111 11111111111111111111 233478888888887 56899999
Q ss_pred HHHhhccCchhhhhhhhhhHHHHHHHHHHH
Q 024323 97 FASLRYTSPTFVASVVNTVAAVTFVIAVVL 126 (269)
Q Consensus 97 ~~al~~~~~~~a~~l~~~~P~~~~i~a~~~ 126 (269)
+.++++.+++.++.+.+++|+++.++++++
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999764
No 49
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.82 E-value=0.00053 Score=59.85 Aligned_cols=132 Identities=11% Similarity=0.141 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHhhcccCCcCCHHHHHHHHHHHHHHH
Q 024323 11 LRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAM-FPFAYFLERKIRPKLTLALFLEIFVLSLVGV 89 (269)
Q Consensus 11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (269)
+.+|+++.++++.+.+..+..+.|.. +.|+.....=+. ++.++- ..+....++ +..+++. ++-.+.|++-
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~~~~~---~~~~k~~-~~nil~G~~w- 205 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQA-IGMLIGAFIFNLFSKK---PFFEKKS-WKNILTGLIW- 205 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHH-HHHHHHHHHHhhcccc---cccccch-HHhhHHHHHH-
Confidence 45678999999999999988888874 477766666442 222222 222222211 1123333 3335667664
Q ss_pred HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH
Q 024323 90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVT 153 (269)
Q Consensus 90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 153 (269)
..++.+++.+.+..+.+.+-.+.-+.+++..+.+.+++||+=++|| -...++|+++.++|..
T Consensus 206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke--~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE--MIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh--HHHHHHHHHHHHHhhh
Confidence 5788999999999999999999999999999999999999988862 1223445555555543
No 50
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0038 Score=55.28 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=128.6
Q ss_pred HHHHHHHhCCCC-hHHHH--HHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchh
Q 024323 31 FITEASFNHGMN-PHVYV--TYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTF 107 (269)
Q Consensus 31 ~~~k~~~~~~~~-p~~~~--~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 107 (269)
+.=|.++. .++ |..+. ..+.+.+.+.+...-..+. -+.++.+++..++.+-..++- .+....-..+++|.+...
T Consensus 29 vvNK~vls-~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~l-v~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnVpm 105 (314)
T KOG1444|consen 29 VVNKIVLS-SYNFPMGLLLMLLQSLASVLVVLVLKRLGL-VNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNVPM 105 (314)
T ss_pred HHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHHHhce-eecCCcChHHHHHHccHHHHH-HHHHHHccccccccCchH
Confidence 33455555 232 44444 4899988887766533222 234556676666666556553 344455567889999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHH
Q 024323 108 VASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGS 187 (269)
Q Consensus 108 a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 187 (269)
-+++=...|+++++...+++|.+++.+ .+.++....+|....... + .+.+ ..|.
T Consensus 106 ~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~--d-----------------~sf~-~~gY 159 (314)
T KOG1444|consen 106 FTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT--D-----------------LSFN-LRGY 159 (314)
T ss_pred HHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc--c-----------------ceec-chhH
Confidence 999999999999999999999999985 888888888887776521 1 1122 2589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhc
Q 024323 188 FLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVA 237 (269)
Q Consensus 188 ~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 237 (269)
.+++...++-+.+.+..|+..+... +......+..+...+......++.+
T Consensus 160 ~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~g 210 (314)
T KOG1444|consen 160 SWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITG 210 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhc
Confidence 9999999999999999999877644 5577888888888888777776654
No 51
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.75 E-value=6.1e-05 Score=62.12 Aligned_cols=97 Identities=13% Similarity=0.230 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 024323 90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHP 169 (269)
Q Consensus 90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 169 (269)
+++++.|..+++..+++.++.+......|+.+++++++|+|+.. .++++.++++.|++.+.. ...
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay-~DN-------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAY-ADN-------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEe-ccc--------
Confidence 46788999999999999999999999999999999999999999 499999999999998862 111
Q ss_pred CccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024323 170 PIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKR 210 (269)
Q Consensus 170 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~ 210 (269)
...+...|..++..++..-|+|-+..|+....
T Consensus 129 ---------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 129 ---------EHADEIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred ---------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23344689999999999999999999988654
No 52
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.70 E-value=0.0025 Score=55.71 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccc--CCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 024323 19 MVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKI--RPKLTLALFLEIFVLSLVGVTLTLNMY 96 (269)
Q Consensus 19 ~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~ 96 (269)
.+..++.|+.++..=|.. ++|+.+-...-...-.+..+...+...... ....+.+.+..+...|.+. ++...+|
T Consensus 153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf 228 (293)
T COG2962 153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLF 228 (293)
T ss_pred HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHH
Confidence 345567788877776664 477766655555544444444333333222 1123566778888899995 6999999
Q ss_pred HHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 97 FASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 97 ~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
..|-++.+-+...+++|.+|....+++.+++||+++.. +..+-+....|+++.+
T Consensus 229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999994 9999999999998876
No 53
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.62 E-value=0.0024 Score=56.97 Aligned_cols=135 Identities=16% Similarity=0.245 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHH--hhccc--CC--cCCHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFN-HGMNPHVYVTYRHIVAGIAMFPFAYF--LERKI--RP--KLTLALFLEIFVLSLV 87 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~-~~~~p~~~~~~r~~~a~l~l~~~~~~--~~~~~--~~--~~~~~~~~~~~~~g~~ 87 (269)
|+++++++.++-|......+...+ .+.++.+..++-...+.+..++.... .+... .+ ...++.+..++...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999998774 35788999999999988887776655 22111 00 1122233444555555
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
+ .+.+.+.+...++.++...+++..+--+++.+++.++++++++.. +|.|+++.+.|..+-.
T Consensus 235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS 296 (303)
T ss_pred H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence 4 467777788899999999999999999999999999999999995 9999999999999875
No 54
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.44 E-value=0.0049 Score=48.65 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 024323 18 LMVLAQLSYTFLYFITEASFNHGMN-PHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMY 96 (269)
Q Consensus 18 ~~l~a~~~w~~~~~~~k~~~~~~~~-p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 96 (269)
..+++...-+....+=....+ ..+ |...+++.+..+.+.+..+....+++..+..+... ++...-|+++. ..-.+.
T Consensus 5 la~~aG~~i~~q~~~N~~L~~-~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~-~~V~~~ 81 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGK-ALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGV-FFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHH-HHHHHH
Confidence 334444444444333333333 354 99999999999999988777766554332222222 33445677764 677788
Q ss_pred HHHhhccCchhhhhhhhhhHHH-HHHHHHH----HhccccccccccchhHHHHHHHHHHHHHH
Q 024323 97 FASLRYTSPTFVASVVNTVAAV-TFVIAVV----LRLETLDLRNARGMAKVLGTLVSLAGVTI 154 (269)
Q Consensus 97 ~~al~~~~~~~a~~l~~~~P~~-~~i~a~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 154 (269)
...+.+.+++.+..+....-++ ..++..+ .-|++++.+ +++|+++.++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 8899999999888877755555 5555554 467888885 99999999999864
No 55
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.32 E-value=0.00068 Score=51.39 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024323 20 VLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFAS 99 (269)
Q Consensus 20 l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 99 (269)
++..++||.+.++.|.... +.++..-.. |..-.... + . .+++. ...+.-.-.+...|+..
T Consensus 2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-L----l--------~n~~y-----~ipf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-L----L--------LNPKY-----IIPFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-H----H--------HhHHH-----HHHHHHHHHHHHHHHHH
Confidence 4567899999999999876 455433331 31111111 0 0 11111 12333344667789999
Q ss_pred hhccCchhhhhhh-hhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323 100 LRYTSPTFVASVV-NTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 100 l~~~~~~~a~~l~-~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
+.+.+.+.+.-+. ++.=++|++.++++.+|..+++ .++|+++.+.|+.+.
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 9999999999885 6888899999988888887876 899999999998764
No 56
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.29 E-value=0.011 Score=44.63 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhccCchhh-hhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323 86 LVGVTLTLNMYFASLRYTSPTFV-ASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 86 ~~~~~~~~~~~~~al~~~~~~~a-~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
+.+..+.+.+...++|+.|.+.+ ++.....-+.+.+.+.+++||+++.. +++|+.+.++|+..+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 44455788889999999998876 45566888999999999999999996 999999999999886
No 57
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.25 E-value=0.0025 Score=48.22 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhh-hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 84 LSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 84 ~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
..+.+..+.+.++..++++.|.+.+=.+ ..+.-+.+.+++++++||+++.. +++|+.+.++|+..+-
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3455566788889999999998877555 66888899999999999999995 9999999999999985
No 58
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0022 Score=47.89 Aligned_cols=66 Identities=27% Similarity=0.283 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhccCchhh-hhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 85 SLVGVTLTLNMYFASLRYTSPTFV-ASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 85 g~~~~~~~~~~~~~al~~~~~~~a-~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
.+++....+.+.-.++|+.|.+.+ ++.....-+.+.+.+++++||+++.. +++|+.+.++|+..+-
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 444456788899999999998866 56677899999999999999999995 9999999999999884
No 59
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.22 E-value=0.0024 Score=49.04 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhh-hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 84 LSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 84 ~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
..+.+..+.+.++..++++.|.+.+=.+ ....-+.+.+++.+++||+++.. +++|+.+.++|+..+-
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 3455566888999999999999877665 56888999999999999999996 9999999999998885
No 60
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.19 E-value=0.0046 Score=55.89 Aligned_cols=139 Identities=13% Similarity=0.227 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhc---ccCCcCCHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNH---GMNPHVYVTYRHIVAGIAMFPFAYFLER---KIRPKLTLALFLEIFVLS 85 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~---~~~p~~~~~~r~~~a~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~g 85 (269)
...|-++.+++++.+|.+.+..|.-.++ ++|...+-.+--+...++++|..+.... .+..-++..+...++..+
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 3568899999999999999999986542 3666666677777777777765554322 122223334445678889
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 86 LVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 86 ~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
+++..+..++|..|.-.+++-.+++=+.++--..++...++.+.++++ ..++|.+..++|-+++.
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~------~~iiGsi~Ifv~Fv~vn 389 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSA------LYIIGSIPIFVGFVIVN 389 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCH------HHHHHHHHHHHHHhhee
Confidence 999999999999999999999999988877778888888899999999 59999999999998886
No 61
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.08 E-value=0.0049 Score=46.24 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhccCchhh-hhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 86 LVGVTLTLNMYFASLRYTSPTFV-ASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 86 ~~~~~~~~~~~~~al~~~~~~~a-~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
+.+...++.+...++|+.|.+.+ ++.....-+.+.+++.+++||+++.. +++|+.+.++|+..+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 44456788899999999998866 45566888999999999999999995 9999999999999874
No 62
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.01 E-value=0.0054 Score=54.77 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL 91 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (269)
..-|....+.++++-+....+.|....+ .+. ...| .+++.++..+.+ ..+.|+....+
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~--------------~~~~~~~~l~~~----~W~~G~~~~~~ 62 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR--------------AGSGGRSYLRRP----LWWIGLLLMVL 62 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc--------------ccchhhHHHhhH----HHHHHHHHHhc
Confidence 3457888888888888888888887542 111 0000 000000001111 23344444557
Q ss_pred HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
+..+.+.++...|++..+-+..+.-++.++++..++|||++++ .+.|+++++.|..+++
T Consensus 63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIV 121 (300)
T ss_pred chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeE
Confidence 7788899999999999999999999999999999999999996 9999999999998876
No 63
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.96 E-value=0.00052 Score=59.25 Aligned_cols=134 Identities=11% Similarity=0.020 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTL 93 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 93 (269)
++....+.+++.-+..+++.|...+ +.+......+=..++.+.-+...........| ..++||+.+..+|+++ ++++
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfg-figQ 267 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFG-FIGQ 267 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhh-hHHH
Confidence 4567777788877888888888655 56655544444445444433333223333333 4667777888899997 5999
Q ss_pred HHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 94 NMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 94 ~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
.+...|+|.--++-++++.++.-+++.++-.++++|-+++ +.|.|+++.....+...
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~------ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTI------WSWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChH------HHhhceeeeehhHHHHH
Confidence 9999999999999999999999999999999999999999 59999988777666654
No 64
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.95 E-value=0.0033 Score=56.28 Aligned_cols=138 Identities=13% Similarity=0.230 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhcccC-----CcCCHHHHHHH
Q 024323 11 LRFKPLLLMVLAQLSYTFLYFITEASF---NHGMNPHVYVTYRHIVAGIAMF-PFAYFLERKIR-----PKLTLALFLEI 81 (269)
Q Consensus 11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~---~~~~~p~~~~~~r~~~a~l~l~-~~~~~~~~~~~-----~~~~~~~~~~~ 81 (269)
-+..|.+.+..+.+..+.-.++.|..+ +.++|+.....+..-.+...++ |+....+.... ..++...+. .
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-L 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-H
Confidence 456799999999999999999999987 3358999999999999999988 88776554332 133444333 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 82 FVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 82 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
.+..++ ....+...|..+.+++|-+-++....-=.++...++++++|++++. +.+|.++++.|+.+-.
T Consensus 239 ~~~sv~-~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 239 LLNSVL-AFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHH-HHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 333444 4577788999999999999999998888888999999999999995 9999999999999975
No 65
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.81 E-value=0.005 Score=45.13 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhccCchhh-hhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHH
Q 024323 85 SLVGVTLTLNMYFASLRYTSPTFV-ASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLV 147 (269)
Q Consensus 85 g~~~~~~~~~~~~~al~~~~~~~a-~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l 147 (269)
.+.+..+.+.++..++++.|.+.+ ++...+..+.+.+.+.+++||+++.+ |+.|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 344566788999999999999988 55677999999999999999999996 9998875
No 66
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.023 Score=48.44 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323 88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG 167 (269)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~ 167 (269)
...++......++++.|=-...+=-+.-|+=++++++++.+++-+++ +...++..++||.+.. ++...-.+
T Consensus 94 sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~g-- 164 (337)
T KOG1580|consen 94 SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVGG-- 164 (337)
T ss_pred HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccCC--
Confidence 34577788889999998887777788999999999999999999997 9999999999999986 44322111
Q ss_pred CCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHH
Q 024323 168 HPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVI 235 (269)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 235 (269)
..+.....|+++.+++-..=+.....+.++.+.+. ...+.+....+-+.+.+....++
T Consensus 165 ----------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lf 223 (337)
T KOG1580|consen 165 ----------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLF 223 (337)
T ss_pred ----------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhhee
Confidence 12345568999999998888888888888777654 44556666666666665544443
No 67
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.33 Score=42.97 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=120.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHH
Q 024323 42 NPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFV 121 (269)
Q Consensus 42 ~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i 121 (269)
++..+.+.+-+++.++-.... ...+... ..++.|..+...++-+ .+...|-|++++|.+=-...+-=..--+-+++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~~-~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAML--KWWKKEL-SGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--hcccccC-CCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 577888888888777654332 2222222 2333356667777776 47888999999999755555544444455778
Q ss_pred HHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHH
Q 024323 122 IAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMY 201 (269)
Q Consensus 122 ~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 201 (269)
++.++.|+|.+.+ +.+...+.-.|+.+..+.+... +.++....+...|..+....-+.=+..+
T Consensus 126 mg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-----------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn 188 (327)
T KOG1581|consen 126 MGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-----------SSSKSGRENSPIGILLLFGYLLFDGFTN 188 (327)
T ss_pred HHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-----------CccccCCCCchHhHHHHHHHHHHHhhHH
Confidence 8999999999997 7888888888988875322111 0111133455789999998888888999
Q ss_pred HHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHH
Q 024323 202 IMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTV 234 (269)
Q Consensus 202 v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~ 234 (269)
..+.++.+++. ++..++....+++++......+
T Consensus 189 ~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li 222 (327)
T KOG1581|consen 189 ATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI 222 (327)
T ss_pred hHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh
Confidence 99999988765 7788888888888888776643
No 68
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.00032 Score=59.80 Aligned_cols=167 Identities=14% Similarity=0.198 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN 94 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 94 (269)
.++.+++-++.||....+.... +-+|.+-+.---..|.++-+.+ ++.. .|..+.+.+..-+..|.+. ..++.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv-~~~~---~p~~T~~~~iv~~isG~~W-s~GQ~ 74 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIV-FLFV---SPELTLTIFIVGFISGAFW-SFGQA 74 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHH-heee---cCccchhhHHHHHHhhhHh-hhhhh
Confidence 4677888999999988877765 3466666555444444443333 3322 2346667666666777775 58899
Q ss_pred HHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhHH-H---HHHHHHHHHHHHHHhcCCCCCCCCCC
Q 024323 95 MYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAKV-L---GTLVSLAGVTIMTVYKGPAARNPGHP 169 (269)
Q Consensus 95 ~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~~-~---g~~l~~~Gv~ll~~~~~~~~~~~~~~ 169 (269)
..+.++++.+++.+.-+.. ++-+-+.+++++.++|-.+.. +. + ++++.++|+.+-+. +.+...
T Consensus 75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~------~~IlG~iAliliviG~~lTs~-~~~~nk----- 142 (288)
T COG4975 75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT------QIILGFIALILIVIGIYLTSK-QDRNNK----- 142 (288)
T ss_pred hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch------hHHHHHHHHHHHHHhheEeee-eccccc-----
Confidence 9999999999999998876 777789999999999998884 33 2 33444455544331 111000
Q ss_pred CccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024323 170 PIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAIT 207 (269)
Q Consensus 170 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~ 207 (269)
+..+..+.-.|....+.+.+.|-.|.+..+..
T Consensus 143 ------~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f 174 (288)
T COG4975 143 ------EEENPSNLKKGIVILLISTLGYVGYVVLFQLF 174 (288)
T ss_pred ------cccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence 01134455678888888999999998885543
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.59 E-value=0.19 Score=45.69 Aligned_cols=144 Identities=14% Similarity=0.073 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHH-HHHHHHh--hcccC-----Cc
Q 024323 11 LRFKPLLLMVLAQLSYTFLY-------FITEASFNHGMNPHVYVTYRHI---VAGIAM-FPFAYFL--ERKIR-----PK 72 (269)
Q Consensus 11 ~~~~~~l~~l~a~~~w~~~~-------~~~k~~~~~~~~p~~~~~~r~~---~a~l~l-~~~~~~~--~~~~~-----~~ 72 (269)
+.+|+++.++++.+..+... +..+.+.+.+.++.....-.+. ++.++. +.++.++ +++.. ++
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 34689999999999988888 5555544446788777666665 444443 2222321 21111 11
Q ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh---hh-hhhHHHHHHHHHHHhccccccccccchhHHHH
Q 024323 73 LT----LALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVAS---VV-NTVAAVTFVIAVVLRLETLDLRNARGMAKVLG 144 (269)
Q Consensus 73 ~~----~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~---l~-~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g 144 (269)
.+ .+......+.|++- ..++.+|..+-...+.+.+.. +. .+..++..+.+. ++||+=+..++.-|..++|
T Consensus 251 ~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 251 LAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 12 12222335556664 467778888888876665554 54 555577777777 5999988332334577899
Q ss_pred HHHHHHHHHHHH
Q 024323 145 TLVSLAGVTIMT 156 (269)
Q Consensus 145 ~~l~~~Gv~ll~ 156 (269)
+++.++|+.++.
T Consensus 329 ~vliI~g~~lig 340 (345)
T PRK13499 329 CVVIILAANIVG 340 (345)
T ss_pred HHHHHHHHHHHh
Confidence 999999998885
No 70
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.31 E-value=0.018 Score=48.70 Aligned_cols=171 Identities=11% Similarity=0.127 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHH
Q 024323 44 HVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIA 123 (269)
Q Consensus 44 ~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a 123 (269)
+...+.+.+++.+.+..+-..+....+ ..+.+.| +...++-+ +-.+.--.+++|.+...-+++-++.-+..+...
T Consensus 38 flll~vQSlvcvv~l~iLk~l~~~~fR-~t~aK~W---fpiSfLLv-~MIyt~SKsLqyL~vpiYTiFKNltII~iAygE 112 (309)
T COG5070 38 FLLLAVQSLVCVVGLLILKFLRLVEFR-LTKAKKW---FPISFLLV-VMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE 112 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhee-hhhhhhh---cCHHHHHH-HHHHhcccceeeeeeeHHHHhccceeehhHhhH
Confidence 566777777777665544322211111 1112222 11222211 122234478999999999999999999999999
Q ss_pred HHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 024323 124 VVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIM 203 (269)
Q Consensus 124 ~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~ 203 (269)
.+++|.|++.- ....-++.+..-+.-. +++.. .........+.|.+++...+++-+.+-..
T Consensus 113 vl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~q-----------~~~~~~~~lN~GY~Wm~~NclssaafVL~ 173 (309)
T COG5070 113 VLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQQ-----------ASAFKAQILNPGYLWMFTNCLSSAAFVLI 173 (309)
T ss_pred HHHhcCccchh------hHHHHHHHHHHHHHhc--cchhh-----------HHHHHhcccCCceEEEehhhHhHHHHHHH
Confidence 99999999994 7777666655554443 22211 11112235678999999999999999988
Q ss_pred HHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323 204 QAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVAR 238 (269)
Q Consensus 204 ~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 238 (269)
.|+..|-.. .....+++..+++.++++....+.|.
T Consensus 174 mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~ed 209 (309)
T COG5070 174 MRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFED 209 (309)
T ss_pred HHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhcc
Confidence 877655322 45788999999999999999988764
No 71
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.23 E-value=0.07 Score=46.40 Aligned_cols=186 Identities=6% Similarity=0.001 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323 15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN 94 (269)
Q Consensus 15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 94 (269)
+++.++.+.+.+|.+++-.|..-. -|++.+-++....-.+.-+.....++. ++. .++..+.|.+- ..++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~--gDg~~fQw~~~~~i~~~g~~v~~~~~~---p~f----~p~amlgG~lW-~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT--GDGFFFQWVMCSGIFLVGLVVNLILGF---PPF----YPWAMLGGALW-ATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC--CCcHHHHHHHHHHHHHHHHHHHHhcCC---Ccc----eeHHHhhhhhh-hcCce
Confidence 356788999999999999998643 577766666544433333333333221 111 23445555664 46778
Q ss_pred HHHHHhhccCchhhhhhhhh-hHHHHHHHHHH-HhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCC---CC-
Q 024323 95 MYFASLRYTSPTFVASVVNT-VAAVTFVIAVV-LRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNP---GH- 168 (269)
Q Consensus 95 ~~~~al~~~~~~~a~~l~~~-~P~~~~i~a~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~---~~- 168 (269)
+-.-.++..+-+.+-++=+. .-+..-..+.+ +++++.+.- .......+|++++++|..+..+-+.+..+.. ++
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~ 149 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET 149 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence 88889999998888877654 44555555544 454433321 1133678899999999988765443331110 00
Q ss_pred CCccc------cC-----CCcc-c-----cchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 024323 169 PPIHI------QR-----NNII-Q-----EQWLKGSFLTIASSITWSAMYIMQAITLKRY 211 (269)
Q Consensus 169 ~~~~~------~~-----~~~~-~-----~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~ 211 (269)
+...+ ++ ++.. + .+...|..+++++++.|+...+=...+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 00000 00 0001 1 1467899999999999999776666655543
No 72
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.19 E-value=0.026 Score=47.92 Aligned_cols=59 Identities=14% Similarity=0.004 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH
Q 024323 89 VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVT 153 (269)
Q Consensus 89 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 153 (269)
......+....+++.++..-+....+.++++.+++.++++|+++.. +++|+.+.+.|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 3456677889999999999999999999999999999999999995 9999999988764
No 73
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.032 Score=48.63 Aligned_cols=171 Identities=15% Similarity=0.130 Sum_probs=107.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhc----ccCCc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhh
Q 024323 42 NPHVYVTYRHIVAGIAMFPFAYFLER----KIRPK--LTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTV 115 (269)
Q Consensus 42 ~p~~~~~~r~~~a~l~l~~~~~~~~~----~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~ 115 (269)
.|..+++++-++...+.+.+.....+ ...++ .+.+..+.+.-+.++- .+...+-..+++|.+++.--+=-++.
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence 47888888877776665555443222 11222 2222222222222221 12223334678888887776667788
Q ss_pred HHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHH
Q 024323 116 AAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSI 195 (269)
Q Consensus 116 P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 195 (269)
-+|+.++.++++|+|-+.. -..++++.+.|-.+ |...+.. .+.-...|.+++.+|.+
T Consensus 139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-----GvdqE~~------------~~~ls~~GvifGVlaSl 195 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-----GVDQEGS------------TGTLSWIGVIFGVLASL 195 (347)
T ss_pred hhHHHHhHHhhcccccccc------cceeehhheehhee-----ccccccc------------cCccchhhhHHHHHHHH
Confidence 8999999999999999995 55555555444333 2111110 11222589999999999
Q ss_pred HHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHh
Q 024323 196 TWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIV 236 (269)
Q Consensus 196 ~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 236 (269)
+-|+..+..|+...... .-+.++.+..+.+.++.+|...+.
T Consensus 196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~ln 237 (347)
T KOG1442|consen 196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILN 237 (347)
T ss_pred HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHc
Confidence 99999999987665543 456777788888888888777654
No 74
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.94 E-value=0.33 Score=43.79 Aligned_cols=179 Identities=13% Similarity=0.118 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccC----CcCCHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIR----PKLTLALFLEIFVLSLV 87 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~ 87 (269)
-..++++..+..++=+..++-.|..- +.+-...=.....++-+++-.+.....-+.. ...+...+....+.|++
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkvk--~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l 82 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKVK--GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL 82 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhcC--CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence 34688888899999999999999864 4666555555566666555333222222111 13455566677778887
Q ss_pred HHHHHHHHHHHHhhccCchhhhh-hhhhhHHHHHHHHHHHhccc---cccccccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 024323 88 GVTLTLNMYFASLRYTSPTFVAS-VVNTVAAVTFVIAVVLRLET---LDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAA 163 (269)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~a~~-l~~~~P~~~~i~a~~~~~e~---~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~ 163 (269)
- .++...|-.+++|.+.+...- ...++-.+..++-.++.++- ++. .-.+..++|++++++|+.+.. ..|..-
T Consensus 83 W-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~--~~g~~vL~Gv~v~LiGIai~g-~AG~~K 158 (344)
T PF06379_consen 83 W-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLAT--PSGQIVLLGVAVCLIGIAICG-KAGSMK 158 (344)
T ss_pred H-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccC--CCchhhhhHHHHHHHHHHHHh-HHHHhh
Confidence 5 467788999999999886654 46688888888877665431 111 113468999999999999985 223211
Q ss_pred CCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 024323 164 RNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIM 203 (269)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~ 203 (269)
+ ++.+++....+.-+|.+.++++.+.-|+++.-
T Consensus 159 e-------~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 159 E-------KELGEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred h-------hhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1 11112223456778999999999888887765
No 75
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.24 Score=39.49 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh-hhhhhHHHHH
Q 024323 42 NPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVAS-VVNTVAAVTF 120 (269)
Q Consensus 42 ~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~-l~~~~P~~~~ 120 (269)
+|+...+..+.++.+.+..+.+.+.+........+.-++...-|++|. .+-..-.....+.+++.... +..-+-+...
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa-~~vt~s~~l~p~lGa~~t~~l~i~gQli~gl 111 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA-IFVTSSILLAPRLGAATTIALVIAGQLIMGL 111 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh-hhhhhhHHhccchhHHHHHHHHHHHHHHHHH
Confidence 599999999999999888777664332222212222234455566654 44444445555665554444 4445555566
Q ss_pred HHHHH-Hh---ccccccccccchhHHHHHHHHHHHHHHH
Q 024323 121 VIAVV-LR---LETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 121 i~a~~-~~---~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
++..+ ++ +++++. .+++|+++.++|++++
T Consensus 112 liD~fG~~g~~~~~~~~------~r~lgi~L~l~gil~~ 144 (150)
T COG3238 112 LIDHFGWFGVPKRPLNL------PRILGILLVLAGILLA 144 (150)
T ss_pred HHHhhcccCCCcCCCCH------HHHHHHHHHHHHHHHh
Confidence 66554 22 355666 5999999999995555
No 76
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.095 Score=45.77 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=99.6
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHH
Q 024323 71 PKLTLALFLEIFVLSLVGVTLTLNMYFASLRY-TSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSL 149 (269)
Q Consensus 71 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~ 149 (269)
++.+.+++...+ ..+ +..+.+-.+++++ ++...=.++-+-.++.+++.++++.|+|-+.+ |..++++.-
T Consensus 60 ~kiplk~Y~i~V--~mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iT 129 (330)
T KOG1583|consen 60 PKIPLKDYAITV--AMF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMIT 129 (330)
T ss_pred CCCchhhhheeh--hee--eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhh
Confidence 345666643322 222 2344455567766 46666667778889999999999999999997 999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHH
Q 024323 150 AGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQ 228 (269)
Q Consensus 150 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~ 228 (269)
+|+++.++.+.++... ..+..+.++.......+..|..+.-.|-+.-|...+.+...-|+++ ++-+.+++.-..+.+.
T Consensus 130 iGiiIcTl~s~~d~~~-~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~ 208 (330)
T KOG1583|consen 130 IGIIICTLFSSKDGRS-KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPL 208 (330)
T ss_pred hhheeEEeecCcchhh-hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccch
Confidence 9999987543332211 0111111111123345577888888888888888888888888876 7778888877776655
Q ss_pred HH
Q 024323 229 SA 230 (269)
Q Consensus 229 ~~ 230 (269)
.+
T Consensus 209 Fl 210 (330)
T KOG1583|consen 209 FL 210 (330)
T ss_pred HH
Confidence 43
No 77
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.0077 Score=53.41 Aligned_cols=122 Identities=12% Similarity=0.213 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL 91 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (269)
+..+.++.+.+.+.-|.++.+-|....+ ... ...| -+....+ .- ++ +..+.|++...+
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~r--------------a~~gg~~-yl-~~--~~Ww~G~ltm~v 76 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLR--------------AGEGGYG-YL-KE--PLWWAGMLTMIV 76 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hccc--------------ccCCCcc-hh-hh--HHHHHHHHHHHH
Confidence 4567788888888888888888887642 110 1111 0111111 11 22 234567777778
Q ss_pred HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCC
Q 024323 92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPA 162 (269)
Q Consensus 92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~ 162 (269)
+...-|.+..+.|++..+-+..+.-++.++++..+++||++.. ..+|++++++|-.+++ .+.|.
T Consensus 77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV-~haP~ 140 (335)
T KOG2922|consen 77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIV-IHAPK 140 (335)
T ss_pred HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEE-EecCc
Confidence 8888999999999999999999999999999999999999996 9999999999999987 34443
No 78
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.44 E-value=0.13 Score=44.00 Aligned_cols=129 Identities=20% Similarity=0.258 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHH------HHHHHHhhcccCCcCCHHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFNHGMNP------HVYVTYRHIVAGIAM------FPFAYFLERKIRPKLTLALFLEI 81 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p------~~~~~~r~~~a~l~l------~~~~~~~~~~~~~~~~~~~~~~~ 81 (269)
-+.++++++...=|.........-. +..+ .....|.-+.-...+ +-+..+..| ....|.-+
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira-~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~R------hP~~~~~l 244 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRA-SYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQR------HPYVFWDL 244 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHH-hhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHh------ccHHHHHH
Confidence 4667777777778887777665433 2221 233333322111111 111111111 12234456
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 82 FVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 82 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
.+.++.+ .+++.+.|.-+.+-+|-.-+++..+--+|+.+.++++++.+++.| ||+|..+.|.|...=.
T Consensus 245 ~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 245 TLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 6677775 689999999999999999999999999999999999999999997 9999999999987743
No 79
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.25 E-value=0.71 Score=40.95 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=103.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcccCC-----cCCHHHHHHHHHH
Q 024323 11 LRFKPLLLMVLAQLSYTFLYFITEASFNH-GMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP-----KLTLALFLEIFVL 84 (269)
Q Consensus 11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~-~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 84 (269)
+...|+.++..-.+.=|+.....+...++ .+++.++...-.+..++.-..-....+. ..+ +.+++.++-+++.
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~-~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGH-LLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCC-CchHHHHHHcChhHHHHHHHH
Confidence 34467788877777777777777766542 4677777777766666654433222221 111 2345555667788
Q ss_pred HHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 85 SLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 85 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
..++ ++++.+.|.-++.-++-.-+.++.+=-++..+++.+.++.+++.. ||+|+.+.|.|+.+=.
T Consensus 248 s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 248 STCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence 8886 589999999999999999999999999999999999999999996 9999999999998754
No 80
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=93.39 E-value=0.31 Score=38.28 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC-----C-CchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323 186 GSFLTIASSITWSAMYIMQAITLKRY-----P-AQLSLTTWMCFLGAAQSAVFTVIVARK 239 (269)
Q Consensus 186 G~~l~l~aa~~~a~~~v~~k~~~~~~-----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 239 (269)
|.++++.|.++.|++.++.|+..++. . ++.....+....+.+.+.|...+.|.+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~ 60 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP 60 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999988772 2 888999999999999999999887764
No 81
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=91.98 E-value=0.26 Score=36.85 Aligned_cols=42 Identities=21% Similarity=0.520 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323 195 ITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVAR 238 (269)
Q Consensus 195 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 238 (269)
++||.+.+..|+..++. ++...+.+++..+.+ ..+.....++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~ 42 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGR 42 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcc
Confidence 46899999999999987 689999999999998 6666665543
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.96 E-value=0.035 Score=47.61 Aligned_cols=134 Identities=9% Similarity=0.147 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL 91 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (269)
-+|++..++.+.+.+-.+.+..+...-++.+...--+.-+.++++.+-. . +..++.++..|. -..-|++- ..
T Consensus 150 ~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~---~---~~~~~~~K~t~~-nii~G~~W-a~ 221 (288)
T COG4975 150 LKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF---F---KMEKRFNKYTWL-NIIPGLIW-AI 221 (288)
T ss_pred hhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh---c---ccccchHHHHHH-HHhhHHHH-Hh
Confidence 3456666666666666655555554322556555555556666654321 1 112234455433 35567664 47
Q ss_pred HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323 92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
++.+++.+-+..+.+.+-.+.-+..++..+-+.+++|||-++||+ ++.++|+++.++|+.++
T Consensus 222 GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~l 283 (288)
T COG4975 222 GNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILL 283 (288)
T ss_pred hHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhh
Confidence 888899999988888888888888899999999999999999842 23456667777776665
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=89.61 E-value=13 Score=32.15 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHhhcccC------CcCCHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAM-FPFAYFLERKIR------PKLTLALFLEIFVL 84 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l-~~~~~~~~~~~~------~~~~~~~~~~~~~~ 84 (269)
...|+++.+.++++=|...+..+..++++-.++..--.++...++++ ++.......... ...+...|..++.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~- 190 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL- 190 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH-
Confidence 34678889999999999999998888644345555555544444433 333222221111 1122222222222
Q ss_pred HHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHH
Q 024323 85 SLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTL 146 (269)
Q Consensus 85 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~ 146 (269)
....-...-.-+||.+.-.=..-....-+++.+.+..+++.+++.. ..+|..
T Consensus 191 ----~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~ 242 (244)
T PF04142_consen 191 ----QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA 242 (244)
T ss_pred ----HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence 2333344556789998888888888999999999999999999994 666554
No 84
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=89.59 E-value=1 Score=33.55 Aligned_cols=116 Identities=18% Similarity=0.142 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHH
Q 024323 16 LLLMVLAQLSYTFLYFITEASFNHGMNPHVYV--TYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTL 93 (269)
Q Consensus 16 ~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~--~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 93 (269)
...++...++||...++.|+... +++...-. .+|-+ .++-+. ...+++.+. -+++-- .+.
T Consensus 5 ~~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~-----------lqe~~t-l~l~w~Y~i-PFllNq----cgS 66 (125)
T KOG4831|consen 5 MDKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIA-----------LQEMKT-LFLNWEYLI-PFLLNQ----CGS 66 (125)
T ss_pred HHHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHH-----------HHHHHH-HHHhHHHHH-HHHHHH----hhH
Confidence 34577889999999999999764 44322111 11110 011000 012333321 122222 345
Q ss_pred HHHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323 94 NMYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 94 ~~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
.+||.-+++++-+.+.-+.+ +.-.|+++.+..+..|-...+ .++|..+..+|+.+.
T Consensus 67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence 67888999999888877655 666788888876555555554 888888888888765
No 85
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.06 E-value=3.5 Score=36.26 Aligned_cols=206 Identities=12% Similarity=0.154 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHhC-CCCh--HHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQ-LSYTFLYFITEASFNH-GMNP--HVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLV 87 (269)
Q Consensus 12 ~~~~~l~~l~a~-~~w~~~~~~~k~~~~~-~~~p--~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 87 (269)
+.+..+.+..+. +.+=.+..+.++..+. +.+| ..++..++++=..+.+.-.... +..++..++|. +..++.+
T Consensus 40 kw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rt---Y~~la~~ 115 (367)
T KOG1582|consen 40 KWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRT---YVILAFL 115 (367)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhH---hhhhHhh
Confidence 344544444333 3355556666665431 4554 4556666554433222111111 11112234443 3334443
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323 88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG 167 (269)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~ 167 (269)
. ...+.+..-++.|.+=-...++=.+--+=+++.+.++-+.|-... ..++..+...|.++.++-+.+
T Consensus 116 t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~------ 182 (367)
T KOG1582|consen 116 T-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ------ 182 (367)
T ss_pred h-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc------
Confidence 2 234444444555554333333333333335566677777887774 899999999999998753221
Q ss_pred CCCccccCCCccccch-hhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 024323 168 HPPIHIQRNNIIQEQW-LKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVARKPADWRI 245 (269)
Q Consensus 168 ~~~~~~~~~~~~~~~~-~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 245 (269)
.++++ ..|..+.-.|-++=|.--.++.+..+..| +..+..+....+|.+.+..+.....+-.+.|..
T Consensus 183 -----------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~f 251 (367)
T KOG1582|consen 183 -----------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTF 251 (367)
T ss_pred -----------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHH
Confidence 12222 46877777777777776667777777776 667888888899999988887766544444443
No 86
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=8 Score=34.61 Aligned_cols=136 Identities=13% Similarity=0.161 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhccc-----CCc-CCHHHHHHHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFN-HGMNPHVYVTYRHIVAGIAMFPFAYFLERKI-----RPK-LTLALFLEIFVLSL 86 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~-~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~-----~~~-~~~~~~~~~~~~g~ 86 (269)
.++.++....+.=+...+..|...+ .+.+-..+..+.-+.+.+.+..+.+..+... .+. .....+-.+.+.++
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 4567777767777777777776543 2456677778888888777766655444211 111 22334455667777
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 87 VGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 87 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
++. +-.++.+.+.+..++..-+++....-..+.+...++.+++.++ ..++|+.+++.|-++-.
T Consensus 237 ~gf-~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 237 MGF-GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHH-HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence 775 5556778899999999999888666667777777788888888 59999999999988865
No 87
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=87.97 E-value=5.6 Score=33.47 Aligned_cols=95 Identities=7% Similarity=-0.034 Sum_probs=59.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCC-----------CCCCCCCCccccC
Q 024323 107 FVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPA-----------ARNPGHPPIHIQR 175 (269)
Q Consensus 107 ~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~-----------~~~~~~~~~~~~~ 175 (269)
.....-+..|+++++.++...+||... .++++.++...|++....++.+. ....++. .+
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~~------~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~----~~ 75 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVTQ------LKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS----SA 75 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeeeh------HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC----Cc
Confidence 344556678888888888888998885 48999988888887533211100 0000000 00
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 024323 176 NNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRY 211 (269)
Q Consensus 176 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~ 211 (269)
+.....+...|....+.+..+-+...+++++..|+.
T Consensus 76 ~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 76 KTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 001123556787778888888888888888876654
No 88
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.66 E-value=6.8 Score=34.49 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhccc--C---CcCCHHHHHHHHHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFN-HGMNPHVYVTYRHIVAGIAMFPFAYFLERKI--R---PKLTLALFLEIFVLSLV 87 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~-~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~~ 87 (269)
.++...-.+.+.=+...-+.+.+.. ..-+..+.+++.+.++.++++......+.-. + .+.+.+.....++.+..
T Consensus 190 ~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~ 269 (367)
T KOG1582|consen 190 IGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLA 269 (367)
T ss_pred eeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHH
Confidence 3455544555555555555555443 1345577888899999988877665544311 1 12344444455555555
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323 88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (269)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 157 (269)
+. ++..+...-++.-++..++.+...---.|.+++++++.++++.+ ..-+.++.+.|+.+=..
T Consensus 270 gy-lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 270 GY-LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY 332 (367)
T ss_pred hH-hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence 43 45555555666678888888888888999999999999999997 77777788899988653
No 89
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=86.19 E-value=7.3 Score=30.56 Aligned_cols=81 Identities=10% Similarity=-0.049 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC-CCCe----eeecCchhhHHHH--HHH
Q 024323 187 SFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK-PADW----RIGLNIDLWSTIY--GVS 259 (269)
Q Consensus 187 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~y--~~~ 259 (269)
.+++++++..-++...++.++.++..+|...+...+..|.+....+....+++ .+.. .+....+.++..| ..+
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~ 82 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence 47788899999999999999988876689999999999999988888776552 1111 1112245566665 777
Q ss_pred Hhhhcccc
Q 024323 260 WRIRQDLY 267 (269)
Q Consensus 260 w~~~~~~~ 267 (269)
+.++|-|.
T Consensus 83 ~~vp~lG~ 90 (138)
T PF04657_consen 83 ILVPRLGA 90 (138)
T ss_pred HHhhhhhH
Confidence 77777664
No 90
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=80.62 E-value=13 Score=31.81 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=84.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhcccCC----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhH
Q 024323 41 MNPHVYVTYRHIVAGIAMFPFAYFLERKIRP----KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVA 116 (269)
Q Consensus 41 ~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P 116 (269)
..-+...++.-+++..++..+....+.+... ..+...+.+.+..|++.. +-.++.-+.++-++++.-+++..+.-
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv-giSy~saWcvrVtSSTtySMvGALNK 261 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV-GISYCSAWCVRVTSSTTYSMVGALNK 261 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh-hhhhccceeEeehhhhHHHHHHHhhh
Confidence 3457778888899999888887776643221 233344456777788765 45567788999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 117 AVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 117 ~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
.-.++.+.++++|+.+.. .+.++++++....+-.
T Consensus 262 lp~alaGlvffdap~nf~------si~sillGflsg~iYa 295 (309)
T COG5070 262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA 295 (309)
T ss_pred ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999995 9999999987666543
No 91
>PRK02237 hypothetical protein; Provisional
Probab=77.69 E-value=3.9 Score=30.60 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 113 NTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 113 ~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
...-+...+..+.+.|+|+++ +.++|..++++|+.++.
T Consensus 67 GvyI~~Sl~W~w~vdg~~Pd~------~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 67 GVYVAGSLLWLWVVDGVRPDR------WDWIGAAICLVGMAVIM 104 (109)
T ss_pred hHHHHHHHHHHHHhcCcCCCh------hHHHhHHHHHHhHHHhe
Confidence 345556668889999999999 59999999999999885
No 92
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=76.59 E-value=3.5 Score=30.77 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 112 VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 112 ~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
-...-+...+..+.+-|+||++ +.++|..++++|+.++.
T Consensus 64 GGvfI~~Sl~W~w~vdg~~Pd~------~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 64 GGVFIVASLLWGWLVDGVRPDR------WDWIGAAICLVGVAIIL 102 (107)
T ss_pred hhhHHHHHHHHHhhhcCcCCCh------HHHHhHHHHHHhHHheE
Confidence 3355666778888999999999 59999999999999986
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.92 E-value=25 Score=28.10 Aligned_cols=55 Identities=7% Similarity=0.018 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323 185 KGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK 239 (269)
Q Consensus 185 ~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 239 (269)
...+..++++.+-....-++.++.|...+|.......+..|.+.+..+.++.++.
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~ 59 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH 59 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5678888999999999999999888877788999999999999988888876543
No 94
>COG2510 Predicted membrane protein [Function unknown]
Probab=72.90 E-value=32 Score=26.83 Aligned_cols=51 Identities=12% Similarity=-0.005 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 024323 186 GSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVA 237 (269)
Q Consensus 186 G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 237 (269)
-.++++++|+.+++..++.|--.++. +|...++...++..+++........
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g 54 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG 54 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC
Confidence 45889999999999999999888877 6778888888888888777776543
No 95
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=72.54 E-value=73 Score=28.67 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhcccC-------CcCCH----H
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHG----MNPHVYVTYRHIVAGIAMFPFAYFLERKIR-------PKLTL----A 76 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~----~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~-------~~~~~----~ 76 (269)
+..|..+...+.++=|.-+.+.+..++++ -+|......---.-.+.++|..+..++... ..... +
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 44677777778887777777777766421 134443333322233334444444333111 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323 77 LFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
....+.+.|.... +--.+-+.-+..++.-..++..-.-=+.+.+++....+|+++- ..|.|..++..|+..=
T Consensus 242 v~g~i~l~g~laF-~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~------lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 242 VIGLISLGGLLAF-LLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL------LNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHH-HHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh------hHHHHHHHHHHHHHHh
Confidence 1122222233321 2222333445666666666666677788999999999999997 5999999999999885
No 96
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=57.31 E-value=1.4e+02 Score=26.62 Aligned_cols=140 Identities=19% Similarity=0.307 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHH----HHhhccc---CCcCCHHHHHHH
Q 024323 10 YLRFKPLLLMVLAQLSYTFLYFITEASF-NHGMNPHVYVTYRHIVAGIAMFPFA----YFLERKI---RPKLTLALFLEI 81 (269)
Q Consensus 10 ~~~~~~~l~~l~a~~~w~~~~~~~k~~~-~~~~~p~~~~~~r~~~a~l~l~~~~----~~~~~~~---~~~~~~~~~~~~ 81 (269)
.+...+.++.+.+.++-+.-.++-+..+ ..+++|.+.+.+.-..+..++-.++ ++...+. .++-.+.||...
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 3445688999999999999998877655 3368999999999877755543332 2221111 112234444322
Q ss_pred H---------HHHHHHHHHHHHHHH-HHh---hccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHH
Q 024323 82 F---------VLSLVGVTLTLNMYF-ASL---RYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVS 148 (269)
Q Consensus 82 ~---------~~g~~~~~~~~~~~~-~al---~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~ 148 (269)
+ ..++.+..+...+|. .|+ ++.++++=.++=.+--.+.-+++..+..|+++. .|+.|-++-
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~l------lqilGFliL 325 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHL------LQILGFLIL 325 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHH------HHHHHHHHH
Confidence 1 222332222222222 222 445777777777777788888888899999999 599999999
Q ss_pred HHHHHHH
Q 024323 149 LAGVTIM 155 (269)
Q Consensus 149 ~~Gv~ll 155 (269)
..|+++-
T Consensus 326 i~Gi~lY 332 (372)
T KOG3912|consen 326 IMGIILY 332 (372)
T ss_pred HHHHHHH
Confidence 9999875
No 97
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=56.75 E-value=1.5e+02 Score=26.50 Aligned_cols=132 Identities=15% Similarity=0.184 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhh------ccc----CCc---CCHHHHH
Q 024323 14 KPLLLMVLAQLSYTFLYFITEASFNH-GMNPHVYVTYRHIVAGIAMFPFAYFLE------RKI----RPK---LTLALFL 79 (269)
Q Consensus 14 ~~~l~~l~a~~~w~~~~~~~k~~~~~-~~~p~~~~~~r~~~a~l~l~~~~~~~~------~~~----~~~---~~~~~~~ 79 (269)
-|+.++.++.+.=+.+....+...++ |=++-+..++-.+++...++...--.. .+. .+. .-+..|.
T Consensus 164 iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~ 243 (330)
T KOG1583|consen 164 IGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWV 243 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHH
Confidence 35666666666666666666655432 457889999999888776654311000 011 010 0112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323 80 EIFVLSLVGVTLTLNMYFASL----RYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~al----~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
.++.- .+.+..=..|. ..+++-+++++..+==.+..+++.+.++.++++. +|+|.++.|+|.++.
T Consensus 244 yLl~n-----~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~f 312 (330)
T KOG1583|consen 244 YLLFN-----VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLF 312 (330)
T ss_pred HHHHH-----HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHH
Confidence 22221 23333222232 3346667778888888999999999999999995 999999999999997
Q ss_pred H
Q 024323 156 T 156 (269)
Q Consensus 156 ~ 156 (269)
.
T Consensus 313 a 313 (330)
T KOG1583|consen 313 A 313 (330)
T ss_pred H
Confidence 5
No 98
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.70 E-value=23 Score=31.30 Aligned_cols=138 Identities=19% Similarity=0.140 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhcc----cCCcC-CHHHHHHHHHHHH
Q 024323 13 FKPLLLMVLAQLSYTFLYFITEASFNHGM-NPHVYVTYRHIVAGIAMFPFAYFLERK----IRPKL-TLALFLEIFVLSL 86 (269)
Q Consensus 13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~-~p~~~~~~r~~~a~l~l~~~~~~~~~~----~~~~~-~~~~~~~~~~~g~ 86 (269)
..|.++.+.+.+.-+.+.+..|.....-- .-..++++....+.++.+|+....+.. ..++. ..+.|..+.+.|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 36888999999999999999997654211 247788888899999999987764421 12233 5566667777788
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323 87 VGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (269)
Q Consensus 87 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 157 (269)
+|...++. -.+-++.++|-.=.+-..--..-=.+++..+.+|-.+.. .|-+-.+.++|-..-+.
T Consensus 264 fgF~mgyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 264 FGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHhhhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHH
Confidence 87554432 233455555543333333334445677888999998884 88888888888877654
No 99
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=55.08 E-value=9.2 Score=28.43 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323 114 TVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (269)
Q Consensus 114 ~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 157 (269)
.......+..+++-|.++++ +.++|..++++|+.++.+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr------~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDR------YDWIGAAICLAGVAVILF 104 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcH------HHhhhHHHHHhceeeeEe
Confidence 44555667777888889998 699999999999988863
No 100
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=47.28 E-value=1.2e+02 Score=22.72 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-----Cchhhhhhhhh-hHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323 82 FVLSLVGVTLTLNMYFASLRYT-----SPTFVASVVNT-VAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (269)
Q Consensus 82 ~~~g~~~~~~~~~~~~~al~~~-----~~~~a~~l~~~-~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 155 (269)
..+..-+.++.-+++..--++. ++++--+++=. .-.+-..++.+++||+++++ ++.|-++...++.++
T Consensus 33 ail~SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~fi 106 (108)
T PF04342_consen 33 AILISWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhee
Confidence 3334444445555554333333 33333333332 22334567788999999996 777777666665543
No 101
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=44.99 E-value=45 Score=26.45 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=22.1
Q ss_pred HhhccCchhhhhhhhhhHHHHHHHHHHHh
Q 024323 99 SLRYTSPTFVASVVNTVAAVTFVIAVVLR 127 (269)
Q Consensus 99 al~~~~~~~a~~l~~~~P~~~~i~a~~~~ 127 (269)
++.--+.-.++++.|+.|+++.+++.++.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566788999999999999887663
No 102
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=43.00 E-value=1.6e+02 Score=23.11 Aligned_cols=31 Identities=3% Similarity=0.265 Sum_probs=25.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 024323 181 EQWLKGSFLTIASSITWSAMYIMQAITLKRY 211 (269)
Q Consensus 181 ~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~ 211 (269)
++...+.+..+++++.|.-|...+||..+.+
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RVK~TF 147 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRVKNTF 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 3446788999999999999999999976654
No 103
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=39.87 E-value=3e+02 Score=25.19 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=85.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcc-------cCCcCCHHHHHHHH
Q 024323 10 YLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERK-------IRPKLTLALFLEIF 82 (269)
Q Consensus 10 ~~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~-------~~~~~~~~~~~~~~ 82 (269)
.+...|+.+.+.++++=|+..+..+..++..=.+..+--.|+-.-++++..+..+.... .....++-.|...+
T Consensus 179 ~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl 258 (345)
T KOG2234|consen 179 QNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVL 258 (345)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHH
Confidence 34456888888888888888888887775333455555555544444443333322211 11123333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 83 VLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 83 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
..++-| .+.-.-++|.+--.=.....+.-+++.+.++.+++.+++.. -.+|+.+.+..+.+-.
T Consensus 259 ~~a~gG-----Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~------F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 259 LNAVGG-----LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLY------FLLGALLVILSIFLYS 321 (345)
T ss_pred HHhccc-----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHH------HHHHHHHHHHHHHHhh
Confidence 333332 34445567776666666667788899999999999999994 8888888877777653
No 104
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=38.05 E-value=51 Score=26.35 Aligned_cols=27 Identities=19% Similarity=0.018 Sum_probs=19.7
Q ss_pred hccCchhhhhhhhhhHHHHHHHHHHHh
Q 024323 101 RYTSPTFVASVVNTVAAVTFVIAVVLR 127 (269)
Q Consensus 101 ~~~~~~~a~~l~~~~P~~~~i~a~~~~ 127 (269)
...+.-.++.+.|+.|++..+.+..+.
T Consensus 70 ~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 70 AEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455678889999999888776544
No 105
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=36.04 E-value=61 Score=28.50 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323 12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL 91 (269)
Q Consensus 12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (269)
..+|-+++++.+-+++.+.+.-..... ..|-.++...--+.++++-..= ....++......|..-....+...++.++
T Consensus 164 p~~GD~lvi~GATlYaVSNv~EEflvk-n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~MFl 241 (336)
T KOG2766|consen 164 PVKGDFLVIAGATLYAVSNVSEEFLVK-NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTMFL 241 (336)
T ss_pred CccCcEEEEecceeeeeccccHHHHHh-cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHHHH
Confidence 446677788888999999998888776 6888888777777776664433 23333333223332111222223343445
Q ss_pred HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
.+.+.=.-++..+++...+=.-+.-++..++ ..++-+.++- -.++-.....|.++-.
T Consensus 242 lYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 242 LYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIYS 298 (336)
T ss_pred HHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEee
Confidence 5555555566666665555444555555555 4566678884 7777777777776653
No 106
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=34.32 E-value=4.1e+02 Score=25.14 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024323 186 GSFLTIASSITWSAMYIMQAITLKR 210 (269)
Q Consensus 186 G~~l~l~aa~~~a~~~v~~k~~~~~ 210 (269)
+....+.|+.|-+.-..+.+...|.
T Consensus 352 ~~AYliAa~a~i~Li~~Y~~~vl~~ 376 (430)
T PF06123_consen 352 NLAYLIAALACIGLISLYLSSVLKS 376 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555555554554443
No 107
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=33.26 E-value=55 Score=25.22 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=19.0
Q ss_pred cCchhhhhhhhhhHHHHHHHHHHHh
Q 024323 103 TSPTFVASVVNTVAAVTFVIAVVLR 127 (269)
Q Consensus 103 ~~~~~a~~l~~~~P~~~~i~a~~~~ 127 (269)
.+...++++.|..|++..+++.++.
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688899999999888877543
No 108
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=32.93 E-value=1.6e+02 Score=26.19 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 89 VTLTLNMYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 89 ~~~~~~~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
......+...|+++-+++...-+.+ ..-..+.+-+.++++|--+..-..--.-..|..+.+.|+.++.
T Consensus 223 ~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~ 291 (300)
T PF05653_consen 223 AVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLS 291 (300)
T ss_pred HHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheee
Confidence 3345556667999999888777766 4445666666778887555421001124567777788888875
No 109
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=32.06 E-value=4.3e+02 Score=24.75 Aligned_cols=33 Identities=24% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHhcccccccc-----ccchhHHHHHHHHHHHHHHHH
Q 024323 124 VVLRLETLDLRN-----ARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 124 ~~~~~e~~~~~~-----~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
..+.+.+-+.+. +|+.+.|.|.++...|..+..
T Consensus 31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap 68 (403)
T PF03209_consen 31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAP 68 (403)
T ss_pred HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHH
Confidence 556677777766 788899999999888877653
No 110
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=29.20 E-value=2.8e+02 Score=22.99 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=44.5
Q ss_pred cCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccc
Q 024323 103 TSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQ 182 (269)
Q Consensus 103 ~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (269)
+..-..+++....--.....-.+..||+++. -+.|.+...+++.+... .|+ ..+-
T Consensus 24 ~~~L~~aliaA~~~a~~~~v~RL~r~~~~~~-------a~~gl~gV~i~a~~A~~-tG~-----------------A~~~ 78 (187)
T PF11361_consen 24 TFGLTPALIAALAVAVVIVVWRLVRRESVQP-------ALSGLFGVAISAAIAWR-TGS-----------------AKDF 78 (187)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhcCccHH-------HHHHHHHHHHHHHHHHH-HCC-----------------hhhh
Confidence 3444556666666666666777888898887 56666666666555432 231 2234
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 024323 183 WLKGSFLTIASSITWSAMYIM 203 (269)
Q Consensus 183 ~~~G~~l~l~aa~~~a~~~v~ 203 (269)
+..|...-...++.+....+.
T Consensus 79 Fl~gi~~n~~~~~~~l~S~lv 99 (187)
T PF11361_consen 79 FLPGIWTNAVYAVVFLVSVLV 99 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555544
No 111
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=29.07 E-value=2.7e+02 Score=22.48 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC--CchhHH
Q 024323 141 KVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP--AQLSLT 218 (269)
Q Consensus 141 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~--~~~~~~ 218 (269)
.-++++.++.|.=++..++-.+..- +...+..|..+.+++.+.-+.+..-.-.+.++.. -..+++
T Consensus 91 ~slAVV~AIFGLElLmvSQvcEd~~-------------SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~ 157 (184)
T PF15108_consen 91 GSLAVVVAIFGLELLMVSQVCEDAH-------------SRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLM 157 (184)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcch-------------hhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHH
Confidence 4567777888886654333222111 4567889999999887766665544444455432 345666
Q ss_pred HHHHHHHHH
Q 024323 219 TWMCFLGAA 227 (269)
Q Consensus 219 ~~~~~~g~~ 227 (269)
+|--+.+..
T Consensus 158 fWCeFtAsF 166 (184)
T PF15108_consen 158 FWCEFTASF 166 (184)
T ss_pred HHHHHHHHH
Confidence 665554443
No 112
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=22.48 E-value=1.8e+02 Score=17.22 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 024323 185 KGSFLTIASSITWSAMYIMQAI 206 (269)
Q Consensus 185 ~G~~l~l~aa~~~a~~~v~~k~ 206 (269)
.=.++-++.+.+|+.|++....
T Consensus 6 liVl~Pil~A~~Wa~fNIg~~A 27 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGRLA 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3456778899999999998443
No 113
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=20.57 E-value=5.1e+02 Score=21.65 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 024323 22 AQLSYTFLYFITEA 35 (269)
Q Consensus 22 a~~~w~~~~~~~k~ 35 (269)
.+++-|.+..+.+.
T Consensus 108 ~aLlsgitaff~~n 121 (226)
T COG4858 108 MALLSGITAFFQKN 121 (226)
T ss_pred HHHHHHHHHHHhcC
Confidence 34444444444444
No 114
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.34 E-value=34 Score=30.32 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=0.0
Q ss_pred chhhHHHHHHH
Q 024323 182 QWLKGSFLTIA 192 (269)
Q Consensus 182 ~~~~G~~l~l~ 192 (269)
....|.++.++
T Consensus 104 ~LF~Gi~~l~l 114 (381)
T PF05297_consen 104 TLFVGIVILFL 114 (381)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33456554433
Done!