Query 024323
Match_columns 269
No_of_seqs 150 out of 1672
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 06:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.8E-07 6.3E-12 72.6 7.3 69 83-157 34-103 (137)
2 3b5d_A Multidrug transporter E 98.5 7.1E-07 2.4E-11 66.7 9.1 68 83-156 34-102 (110)
3 3arc_T Photosystem II reaction 8.1 2.5E+02 0.0085 15.4 2.0 15 119-133 15-29 (32)
4 2hac_A T-cell surface glycopro 5.0 3.4E+02 0.012 14.9 1.5 16 118-133 15-30 (33)
5 3b9w_A Ammonium transporter fa 4.9 1.6E+03 0.053 19.8 15.0 50 185-234 261-313 (407)
6 1rh5_C Secbeta; protein transl 4.3 6.6E+02 0.023 15.3 2.6 21 130-156 27-47 (53)
7 2jp3_A FXYD domain-containing 3.7 6.7E+02 0.023 16.1 2.3 17 140-156 21-37 (67)
8 3m73_A Tellurite resistance pr 3.2 1.9E+03 0.064 18.0 8.2 44 141-200 12-55 (314)
9 1u7g_A Probable ammonium trans 3.2 2.1E+03 0.072 18.6 14.5 50 185-236 283-333 (385)
10 2lmz_A Conotoxin IM17A; novel, 3.1 2.9E+02 0.01 15.5 0.2 11 257-267 11-21 (42)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.54 E-value=1.8e-07 Score=72.58 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhh-hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323 83 VLSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (269)
Q Consensus 83 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 157 (269)
..++++..+++.++..++++.+++.+..+ .++.|++++++++++++|+++.+ +++|+++.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 56777788999999999999999999888 89999999999999999999996 99999999999999864
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.48 E-value=7.1e-07 Score=66.69 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhh-hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323 83 VLSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 83 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
..++++..+++.++..++++.|.+.+..+ ..+.|+++++++++++||+++.+ +++|+.+.++|+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 45666677899999999999999999887 79999999999999999999996 9999999999999986
No 3
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=8.07 E-value=2.5e+02 Score=15.36 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=10.2
Q ss_pred HHHHHHHHhcccccc
Q 024323 119 TFVIAVVLRLETLDL 133 (269)
Q Consensus 119 ~~i~a~~~~~e~~~~ 133 (269)
..++..++++|++..
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 444556678888875
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.04 E-value=3.4e+02 Score=14.93 Aligned_cols=16 Identities=0% Similarity=0.052 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcccccc
Q 024323 118 VTFVIAVVLRLETLDL 133 (269)
Q Consensus 118 ~~~i~a~~~~~e~~~~ 133 (269)
...++..++.+||+.+
T Consensus 15 Ygii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 15 YGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3445555667777665
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=4.94 E-value=1.6e+03 Score=19.75 Aligned_cols=50 Identities=4% Similarity=-0.032 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHh--hCCCchhHHHHHHHHHHHHHHHHHH
Q 024323 185 KGSFLTIASSITW-SAMYIMQAITLK--RYPAQLSLTTWMCFLGAAQSAVFTV 234 (269)
Q Consensus 185 ~G~~l~l~aa~~~-a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~ 234 (269)
...++++++++.. ..+..+.+++.+ +..|+..........|..-.+...+
T Consensus 261 ~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~gl 313 (407)
T 3b9w_A 261 GAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAIL 313 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHH
Confidence 3445555554433 333333333333 3447777776665555554444443
No 6
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=4.26 E-value=6.6e+02 Score=15.25 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHH
Q 024323 130 TLDLRNARGMAKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 130 ~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 156 (269)
|++++ .++++.++++...++.
T Consensus 27 Ki~P~------~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 27 RVKPE------HVIGVTVAFVIIEAIL 47 (53)
T ss_dssp CCCHH------HHHHHHHHHHHHHHHH
T ss_pred ccCCe------ehhhhHHHHHHHHHHH
Confidence 66675 7888887777776654
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.70 E-value=6.7e+02 Score=16.13 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 024323 140 AKVLGTLVSLAGVTIMT 156 (269)
Q Consensus 140 ~~~~g~~l~~~Gv~ll~ 156 (269)
.-+++.++.++|++++.
T Consensus 21 GLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 21 GLIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH
Confidence 45667777788888875
No 8
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=3.20 E-value=1.9e+03 Score=17.98 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHH
Q 024323 141 KVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAM 200 (269)
Q Consensus 141 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~ 200 (269)
.+.|+.++..|+..... +-+. . .+.....|..+..++.+.|.+.
T Consensus 12 ~~F~~~MGtg~la~~~~-~~~~-~--------------~~~~~~i~~~l~~l~~~l~~~l 55 (314)
T 3m73_A 12 GYFGIPLGLAALSLAWF-HLEN-L--------------FPAARMVSDVLGIVASAVWILF 55 (314)
T ss_dssp GGGHHHHHHHHHHHHHH-TTTT-T--------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHH-h--------------CCchHHHHHHHHHHHHHHHHHH
Confidence 78999999999988852 2111 1 1223357777877777666654
No 9
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=3.20 E-value=2.1e+03 Score=18.64 Aligned_cols=50 Identities=6% Similarity=0.043 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHh
Q 024323 185 KGSFLTIASSITWSAMY-IMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIV 236 (269)
Q Consensus 185 ~G~~l~l~aa~~~a~~~-v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (269)
...+.++++++..-... .+.+| . +.+|+......+...|..-.+...++.
T Consensus 283 ~A~iiG~iag~i~~~~~~~l~~~-l-~iDD~l~a~~vHgv~Gi~G~l~~glfa 333 (385)
T 1u7g_A 283 GALIIGVVAGLAGLWGVTMLKRL-L-RVDDPCDVFGVHGVCGIVGCIMTGIFA 333 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-H-CSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHh-C-CCCCCCCCEeecccccHHHHHHHHHhc
Confidence 34455555544433322 23333 2 355888888777766666555555443
No 10
>2lmz_A Conotoxin IM17A; novel, helix, hairpin; NMR {Conus imperialis}
Probab=3.12 E-value=2.9e+02 Score=15.53 Aligned_cols=11 Identities=55% Similarity=0.827 Sum_probs=7.8
Q ss_pred HHHHhhhcccc
Q 024323 257 GVSWRIRQDLY 267 (269)
Q Consensus 257 ~~~w~~~~~~~ 267 (269)
.|+|++++...
T Consensus 11 cyswc~~q~l~ 21 (42)
T 2lmz_A 11 CYSWCIKQDLS 21 (42)
T ss_dssp HHHHHHHTCSC
T ss_pred HHHHHHHHhhh
Confidence 57888887653
Done!