Query 024323
Match_columns 269
No_of_seqs 150 out of 1672
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 06:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024323.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024323hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.7 89 0.0065 14.8 2.7 19 185-203 3-21 (27)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 8.7 1.3E+02 0.0092 14.5 3.0 17 117-133 13-29 (30)
3 d1l7va_ f.22.1.1 (A:) ABC tran 5.4 4.7E+02 0.034 20.1 5.6 25 141-165 64-88 (324)
4 d1x61a2 g.39.1.3 (A:35-66) Thy 5.3 28 0.002 17.6 -1.5 7 262-268 17-23 (32)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 4.9 2.5E+02 0.018 14.3 3.1 22 180-201 14-35 (37)
6 d2e74h1 f.23.27.1 (H:3-29) Pet 3.9 2.2E+02 0.016 13.2 1.4 15 250-264 5-19 (27)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 3.7 8.7E+02 0.063 18.9 16.3 126 81-235 198-330 (383)
8 d1gl4a1 d.22.1.2 (A:399-631) D 2.7 2.8E+02 0.02 20.7 1.6 36 98-134 43-78 (233)
9 d1v54m_ f.23.7.1 (M:) Mitochon 2.4 5.2E+02 0.038 13.7 2.3 15 140-154 14-28 (43)
10 d1jb0l_ f.31.1.1 (L:) Photosys 2.0 1E+03 0.073 16.0 5.0 54 182-235 75-134 (151)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.65 E-value=89 Score=14.75 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 024323 185 KGSFLTIASSITWSAMYIM 203 (269)
Q Consensus 185 ~G~~l~l~aa~~~a~~~v~ 203 (269)
.|.+..-++++.||.|--.
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5777777888888887654
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.67 E-value=1.3e+02 Score=14.47 Aligned_cols=17 Identities=6% Similarity=0.147 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhcccccc
Q 024323 117 AVTFVIAVVLRLETLDL 133 (269)
Q Consensus 117 ~~~~i~a~~~~~e~~~~ 133 (269)
++...+-.++++|++..
T Consensus 13 ~i~lfffaiffreppri 29 (30)
T d2axtt1 13 IIALFFFAIFFREPPRI 29 (30)
T ss_dssp HHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 34444445567776653
No 3
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=5.38 E-value=4.7e+02 Score=20.06 Aligned_cols=25 Identities=16% Similarity=0.533 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC
Q 024323 141 KVLGTLVSLAGVTIMTVYKGPAARN 165 (269)
Q Consensus 141 ~~~g~~l~~~Gv~ll~~~~~~~~~~ 165 (269)
-..|..+++.|+.+=...++|..++
T Consensus 64 ~l~Ga~La~sG~~lQ~~~rNpLA~P 88 (324)
T d1l7va_ 64 LLVGAALAISGAVMQALFENPLAEP 88 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 5678888999998865557766543
No 4
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.27 E-value=28 Score=17.57 Aligned_cols=7 Identities=29% Similarity=1.084 Sum_probs=2.9
Q ss_pred hhccccC
Q 024323 262 IRQDLYC 268 (269)
Q Consensus 262 ~~~~~~~ 268 (269)
++|+-||
T Consensus 17 vekkayC 23 (32)
T d1x61a2 17 VERRAYC 23 (32)
T ss_dssp SSSCEEE
T ss_pred eeccccc
Confidence 3444444
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.89 E-value=2.5e+02 Score=14.26 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=16.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 024323 180 QEQWLKGSFLTIASSITWSAMY 201 (269)
Q Consensus 180 ~~~~~~G~~l~l~aa~~~a~~~ 201 (269)
..+.-+|.++.+.-++.++.|.
T Consensus 14 rtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3455678888888888887764
No 6
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.91 E-value=2.2e+02 Score=13.18 Aligned_cols=15 Identities=13% Similarity=0.291 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHhhhc
Q 024323 250 DLWSTIYGVSWRIRQ 264 (269)
Q Consensus 250 ~~~~~~y~~~w~~~~ 264 (269)
+|.+++-..+|.+++
T Consensus 5 gwv~llvvftwsiam 19 (27)
T d2e74h1 5 GWVALLVVFTWSIAM 19 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHhHHHHHhhheeee
Confidence 355555455565543
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.74 E-value=8.7e+02 Score=18.91 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchhhh--hhhhhhHHHHHHHHH----HHhccccccccccchhHHHHHHHHHHHHHH
Q 024323 81 IFVLSLVGVTLTLNMYFASLRYTSPTFVA--SVVNTVAAVTFVIAV----VLRLETLDLRNARGMAKVLGTLVSLAGVTI 154 (269)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~--~l~~~~P~~~~i~a~----~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 154 (269)
...+|.+-...++..++-+-.......+. .........+..+++ .+.++|.+.. ...-. +++|.+-
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~------~~~nG--~LaGLVa 269 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLL------GACSG--AIAGLVG 269 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHH------HHHHH--HHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHH------HHHHH--hhhhhhh
Confidence 34456555566777777776655433322 223333333333333 3455666663 22222 3446555
Q ss_pred HHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHH-HHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHH
Q 024323 155 MTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIAS-SITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFT 233 (269)
Q Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a-a~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 233 (269)
++ .+.. --+.....+.+.++ .+++-.+..+.+|. +.+|+......+...|..-.+...
T Consensus 270 it--a~~~-----------------~v~p~~A~~iG~i~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~g 328 (383)
T d1u7ga_ 270 VT--PACG-----------------YIGVGGALIIGVVAGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTG 328 (383)
T ss_dssp HT--TTTT-----------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHH
T ss_pred cc--cCcc-----------------ccchhhHHHHHhhccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHH
Confidence 54 1211 11111233444443 34444444443332 345788888877776666655555
Q ss_pred HH
Q 024323 234 VI 235 (269)
Q Consensus 234 ~~ 235 (269)
++
T Consensus 329 lf 330 (383)
T d1u7ga_ 329 IF 330 (383)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 8
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.66 E-value=2.8e+02 Score=20.71 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=29.3
Q ss_pred HHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccc
Q 024323 98 ASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLR 134 (269)
Q Consensus 98 ~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~ 134 (269)
.++..+|+..+..+..+.|+.+. ++|+|-+|.....
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCcc
Confidence 35677888999999999997765 5799999988875
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.44 E-value=5.2e+02 Score=13.66 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHH
Q 024323 140 AKVLGTLVSLAGVTI 154 (269)
Q Consensus 140 ~~~~g~~l~~~Gv~l 154 (269)
-+.+|+...|++.+.
T Consensus 14 E~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 14 EQAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 367777776666554
No 10
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=2.04 E-value=1e+03 Score=16.01 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=28.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchh------HHHHHHHHHHHHHHHHHHH
Q 024323 182 QWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLS------LTTWMCFLGAAQSAVFTVI 235 (269)
Q Consensus 182 ~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~ 235 (269)
....+..+.++..+|.++|...+.+-...-++++. -.+-.+++|.+--..++++
T Consensus 75 Gllsaiglv~Ilt~~L~lYg~~sf~~~~~~~d~l~t~~gWs~F~~GF~~Gg~GGa~fAy~ 134 (151)
T d1jb0l_ 75 GLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGAMGSAFVAFF 134 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCCcccccCcccHHHhhchhhhccccHHHHHHH
Confidence 33445566667778888887775432111112222 3344455666665555544
Done!