Query 024324
Match_columns 269
No_of_seqs 252 out of 885
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1E-65 2.2E-70 492.7 22.1 245 20-265 14-285 (408)
2 KOG2288 Galactosyltransferases 100.0 1.7E-47 3.7E-52 347.0 13.3 149 116-265 8-157 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 4.6E-36 9.9E-41 301.8 15.7 144 116-266 382-526 (636)
4 KOG2287 Galactosyltransferases 100.0 1.1E-33 2.4E-38 268.2 15.1 142 118-265 94-238 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 1E-32 2.2E-37 239.2 10.2 128 133-265 1-132 (195)
6 PTZ00210 UDP-GlcNAc-dependent 99.9 8.1E-27 1.8E-31 222.3 11.3 145 115-261 76-244 (382)
7 PF13334 DUF4094: Domain of un 99.9 4.4E-23 9.6E-28 163.7 5.6 79 23-101 1-95 (95)
8 PF02434 Fringe: Fringe-like; 98.9 1.3E-08 2.8E-13 93.0 9.7 114 121-253 8-123 (252)
9 KOG2246 Galactosyltransferases 98.8 1.9E-08 4.1E-13 96.9 8.5 112 116-251 88-203 (364)
10 PLN03153 hypothetical protein; 97.5 0.00045 9.7E-09 69.6 9.8 38 214-251 208-245 (537)
11 KOG3708 Uncharacterized conser 80.1 2.2 4.8E-05 43.7 4.2 59 193-251 71-132 (681)
12 PF09258 Glyco_transf_64: Glyc 76.1 3 6.5E-05 38.2 3.6 53 216-268 75-127 (247)
13 cd06434 GT2_HAS Hyaluronan syn 59.9 79 0.0017 26.8 8.9 75 157-242 29-103 (235)
14 cd04192 GT_2_like_e Subfamily 58.0 1E+02 0.0022 25.7 9.2 78 157-241 29-107 (229)
15 PF00535 Glycos_transf_2: Glyc 57.5 68 0.0015 24.7 7.5 42 210-251 72-114 (169)
16 cd06423 CESA_like CESA_like is 48.0 1.2E+02 0.0027 23.1 9.1 36 207-242 69-104 (180)
17 cd02525 Succinoglycan_BP_ExoA 47.4 1.1E+02 0.0023 25.9 7.7 77 156-242 31-107 (249)
18 cd04185 GT_2_like_b Subfamily 43.1 1.8E+02 0.004 24.0 8.4 63 175-241 42-104 (202)
19 PF13641 Glyco_tranf_2_3: Glyc 41.3 55 0.0012 27.7 4.9 77 157-241 31-111 (228)
20 PF13506 Glyco_transf_21: Glyc 41.3 67 0.0015 27.5 5.5 47 197-243 12-58 (175)
21 TIGR03472 HpnI hopanoid biosyn 41.0 3.2E+02 0.007 25.9 11.8 81 156-242 70-152 (373)
22 PRK11204 N-glycosyltransferase 38.2 3.6E+02 0.0078 25.6 12.0 67 174-246 98-164 (420)
23 cd04187 DPM1_like_bac Bacteria 37.1 2.3E+02 0.0049 23.0 9.4 88 156-252 29-116 (181)
24 PF03452 Anp1: Anp1; InterPro 35.7 2.6E+02 0.0055 26.5 8.7 98 154-253 54-182 (269)
25 TIGR03469 HonB hopene-associat 35.6 1.9E+02 0.004 27.7 8.1 25 217-241 134-158 (384)
26 cd04188 DPG_synthase DPG_synth 35.5 2.7E+02 0.0058 23.4 9.2 88 156-251 30-118 (211)
27 cd04186 GT_2_like_c Subfamily 35.0 2.1E+02 0.0046 22.1 7.8 38 200-241 62-99 (166)
28 cd06421 CESA_CelA_like CESA_Ce 34.4 63 0.0014 27.3 4.2 39 208-246 76-114 (234)
29 cd06442 DPM1_like DPM1_like re 34.3 2.7E+02 0.0059 23.2 9.7 38 214-251 76-114 (224)
30 smart00786 SHR3_chaperone ER m 32.5 53 0.0012 29.7 3.5 32 23-54 6-43 (196)
31 PF06072 Herpes_US9: Alphaherp 30.0 51 0.0011 24.5 2.4 16 27-42 42-57 (60)
32 PRK14583 hmsR N-glycosyltransf 29.7 4.5E+02 0.0098 25.6 9.8 93 156-259 104-196 (444)
33 cd04179 DPM_DPG-synthase_like 27.7 3.2E+02 0.007 21.9 9.2 86 157-251 29-115 (185)
34 cd06437 CESA_CaSu_A2 Cellulose 27.2 3.9E+02 0.0085 22.7 8.7 32 208-239 79-110 (232)
35 PF03742 PetN: PetN ; InterPr 26.4 85 0.0018 20.1 2.6 22 23-44 5-26 (29)
36 PF04508 Pox_A_type_inc: Viral 26.3 45 0.00099 20.2 1.4 19 81-99 3-21 (23)
37 PF04786 Baculo_DNA_bind: ssDN 25.8 47 0.001 30.8 2.0 48 183-234 94-142 (248)
38 cd02514 GT13_GLCNAC-TI GT13_GL 25.7 1.1E+02 0.0023 29.7 4.6 45 205-249 86-133 (334)
39 cd02520 Glucosylceramide_synth 25.5 4E+02 0.0086 22.2 9.9 79 156-240 30-110 (196)
40 cd06913 beta3GnTL1_like Beta 1 24.5 1.3E+02 0.0027 25.5 4.4 43 209-251 77-119 (219)
41 PF08229 SHR3_chaperone: ER me 23.7 56 0.0012 29.5 2.1 30 25-54 8-43 (196)
42 PF09964 DUF2198: Uncharacteri 23.5 65 0.0014 24.9 2.1 25 21-45 43-67 (74)
43 cd04195 GT2_AmsE_like GT2_AmsE 23.1 1.2E+02 0.0026 25.0 3.9 45 208-252 72-118 (201)
44 TIGR01556 rhamnosyltran L-rham 22.1 1.1E+02 0.0023 27.4 3.6 35 206-241 64-98 (281)
45 cd06420 GT2_Chondriotin_Pol_N 21.6 1.8E+02 0.0039 23.4 4.6 34 208-241 71-104 (182)
46 COG4092 Predicted glycosyltran 21.6 3.4E+02 0.0075 26.3 6.9 80 154-239 36-117 (346)
47 cd02526 GT2_RfbF_like RfbF is 21.5 2E+02 0.0042 24.4 5.0 34 204-238 64-97 (237)
48 cd06438 EpsO_like EpsO protein 21.4 4.6E+02 0.0099 21.5 9.4 48 205-252 69-117 (183)
49 cd04184 GT2_RfbC_Mx_like Myxoc 20.6 4.7E+02 0.01 21.3 9.1 34 208-241 75-108 (202)
50 PRK10714 undecaprenyl phosphat 20.1 7.1E+02 0.015 23.3 8.9 87 156-251 38-125 (325)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1e-65 Score=492.69 Aligned_cols=245 Identities=38% Similarity=0.623 Sum_probs=209.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccccccccchHHHH------hhhhh-hccCCCcc-------cCccchh-hhh----h
Q 024324 20 QIHTSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLS------NFLKK-SMEQRPKV-------LTVEDKL-MLL----G 80 (269)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~~~~~------~~~~~-~~~~~~~~-------~~~~~~~-~~~----~ 80 (269)
+.+|++|+++||++|||+|++||+|||..||+.+..+ ++++. +++|+++. ....|+| +|. |
T Consensus 14 ~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~t~~~ 93 (408)
T PLN03193 14 SVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSKTHNA 93 (408)
T ss_pred ccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccchhHHHHHHhhHHHH
Confidence 5689999999999999999999999999998777654 23333 33455443 1345788 776 9
Q ss_pred hhhhhhhHHHhhhchhhhhhcCc--ccccccc-----CCCCCCcceEEEEEEecCCCChhhhhhhhhccCCCcccccccc
Q 024324 81 CKDLERRIVEAEMDLTLAKSQGY--LKNQLLQ-----SGSSSGKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLE 153 (269)
Q Consensus 81 ~~~~~~~~~~le~ela~ar~~~~--~~~~~~~-----~~~~~~~k~flvIgI~Sap~n~~RRdaIR~TW~~~~~~l~~le 153 (269)
||+|||+|++||||||+||++++ ..+.+.. .....+++++|||||+|+|+|++||++||+|||+++..+.+++
T Consensus 94 ~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle 173 (408)
T PLN03193 94 IQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLE 173 (408)
T ss_pred HHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccc
Confidence 99999999999999999999776 3332221 1224456699999999999999999999999999887777777
Q ss_pred -cCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehh
Q 024324 154 -ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLE 232 (269)
Q Consensus 154 -~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~ 232 (269)
+++|++|||||++.+++..++++|++|+++|||||++| |+|+|+|||+||+++|+||.++|+|+||+|+|||+|||++
T Consensus 174 ~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lD-fvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~ 252 (408)
T PLN03193 174 EEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLD-HVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIA 252 (408)
T ss_pred cCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEe-cccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHH
Confidence 78999999999998777788999999999999999997 9999999999999999999999999999999999999999
Q ss_pred hHHHHHhccCCCCceEEEEeeccceeccCCccc
Q 024324 233 GLIGLLDRSRGQESAYIGCMKSGDVVTEEYIIL 265 (269)
Q Consensus 233 ~L~~~L~~~~~~~rlYiG~mksg~V~r~~~~K~ 265 (269)
+|+.+|++++.++++|+|||++|||++++..||
T Consensus 253 ~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky 285 (408)
T PLN03193 253 TLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRY 285 (408)
T ss_pred HHHHHHHhcCCCCCEEEEecccCccccCCCCcC
Confidence 999999988888899999999999876666554
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=346.96 Aligned_cols=149 Identities=54% Similarity=0.856 Sum_probs=144.6
Q ss_pred CcceEEEEEEecCCCChhhhhhhhhccCCCcccccccc-cCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCc
Q 024324 116 GKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLE-ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE 194 (269)
Q Consensus 116 ~~k~flvIgI~Sap~n~~RRdaIR~TW~~~~~~l~~le-~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fv 194 (269)
.+++|+||||+|+|++.+||+++|+||||++++++++| ++||++|||||+ ++.+++++++|++|+++|||||+||+|+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 56899999999999999999999999999999999999 999999999999 5567789999999999999999998899
Q ss_pred cccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhccCCCCceEEEEeeccceeccCCccc
Q 024324 195 EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEYIIL 265 (269)
Q Consensus 195 DsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~mksg~V~r~~~~K~ 265 (269)
|+|+|||.||+.||.+|+.+|+|+||+|+|||+|||++.|+..|++++.+|++||||||+|||+.+|+.||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw 157 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKW 157 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.6e-36 Score=301.81 Aligned_cols=144 Identities=18% Similarity=0.262 Sum_probs=129.1
Q ss_pred CcceEEEEEEecCCCChhhhhhhhhccCCCcccccccccCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCcc
Q 024324 116 GKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEE 195 (269)
Q Consensus 116 ~~k~flvIgI~Sap~n~~RRdaIR~TW~~~~~~l~~le~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvD 195 (269)
.++++|||+|+|+|+|++||+|||+|||+... ..+.++.++|+||.+.+ +.+++.|++|+++||||||+| |+|
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~d-F~D 454 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLMP-FVD 454 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhccccc----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEEe-eec
Confidence 45699999999999999999999999998532 11356899999999875 367899999999999999997 999
Q ss_pred ccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhccCCCCceEEEEeec-cceeccCCcccc
Q 024324 196 AQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKS-GDVVTEEYIILS 266 (269)
Q Consensus 196 sY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~mks-g~V~r~~~~K~~ 266 (269)
+|+|||+||++++.|+..|++|+||||+|||+|||+++|+.+|+.....+++|+|++.. ..++|+|.+||-
T Consensus 455 sY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWY 526 (636)
T PLN03133 455 YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWY 526 (636)
T ss_pred hhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999999998776677899999876 468999999994
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=268.18 Aligned_cols=142 Identities=20% Similarity=0.294 Sum_probs=129.7
Q ss_pred ceEEEEEEecCCCChhhhhhhhhccCCCcccccccccCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCcccc
Q 024324 118 KLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQ 197 (269)
Q Consensus 118 k~flvIgI~Sap~n~~RRdaIR~TW~~~~~~l~~le~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY 197 (269)
.++++|+|.|+++|++||++||+|||++.. ..+..++++|++|.+++.. .+++.+.+|++.|||||+.| |.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~d-f~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVD-FEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEe-cccch
Confidence 589999999999999999999999998764 1146699999999998765 66889999999999999997 99999
Q ss_pred CCccHHHHHHHHHhhh-cCCceEEEEeCCceeeehhhHHHHHhcc-CCCCceEEEEeec-cceeccCCccc
Q 024324 198 EELPKKAKFFFSTAVQ-IWDAEFYVKVDDNIDLDLEGLIGLLDRS-RGQESAYIGCMKS-GDVVTEEYIIL 265 (269)
Q Consensus 198 ~NLt~Kt~~~f~wa~~-~~~a~F~lKvDDDvfVNl~~L~~~L~~~-~~~~rlYiG~mks-g~V~r~~~~K~ 265 (269)
.|||+|+++++.|+.+ |++|+|++|+|||||||+++|+.+|..+ .+.+++|+|.+.. .+++|++++||
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~Kw 238 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKW 238 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCC
Confidence 9999999999999987 6789999999999999999999999998 7888999999755 58999999998
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.98 E-value=1e-32 Score=239.22 Aligned_cols=128 Identities=23% Similarity=0.347 Sum_probs=113.2
Q ss_pred hhhhhhhhccCCCcccccccccCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhh
Q 024324 133 LNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAV 212 (269)
Q Consensus 133 ~RRdaIR~TW~~~~~~l~~le~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~ 212 (269)
+||++||+||++.... ...++.++||+|.+++.+..+++.|.+|+++||||||+| |.|+|+|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~~----~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d-~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF----KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGD-FVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhccccc----CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeee-cccccchhhHHHHHHHHHHH
Confidence 5999999999986531 146899999999998666678889999999999999996 99999999999999999998
Q ss_pred hcCC-ceEEEEeCCceeeehhhHHHHHhcc---CCCCceEEEEeeccceeccCCccc
Q 024324 213 QIWD-AEFYVKVDDNIDLDLEGLIGLLDRS---RGQESAYIGCMKSGDVVTEEYIIL 265 (269)
Q Consensus 213 ~~~~-a~F~lKvDDDvfVNl~~L~~~L~~~---~~~~rlYiG~mksg~V~r~~~~K~ 265 (269)
++|+ ++||+|+|||+|||+++|..+|... .....+|.||++.+++++++.+||
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw 132 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKW 132 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCc
Confidence 7765 9999999999999999999999987 334556777888999999999998
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.94 E-value=8.1e-27 Score=222.31 Aligned_cols=145 Identities=17% Similarity=0.284 Sum_probs=123.7
Q ss_pred CCcceEEEEEEecCCCC--hhhhhhhhhccCCC-cccccccc-cCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEe
Q 024324 115 SGKKLLAVIGVYTGFGS--HLNRNVYRGSWMPK-GDALKKLE-ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLIL 190 (269)
Q Consensus 115 ~~~k~flvIgI~Sap~n--~~RRdaIR~TW~~~-~~~l~~le-~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~l 190 (269)
..+.+++|+||.|..++ +.||++.|+||+.- +.+.+.++ ...+.++|++|++++.+..++.++++|+++|||||++
T Consensus 76 ~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil 155 (382)
T PTZ00210 76 KAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL 155 (382)
T ss_pred ccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE
Confidence 35679999999999988 99999999998764 33555555 4457899999999999888999999999999999999
Q ss_pred CCC------------------ccccCCccHHHHHHHHHhhhcC-CceEEEEeCCceeeehhhHHHHHhccCCCCceEEEE
Q 024324 191 EGH------------------EEAQEELPKKAKFFFSTAVQIW-DAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGC 251 (269)
Q Consensus 191 d~f------------------vDsY~NLt~Kt~~~f~wa~~~~-~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~ 251 (269)
| | .|+|.|||.||+++|+||...| +++|++|+|||+|||++.++.+|+.. +...+|+|.
T Consensus 156 p-f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 156 P-TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred e-cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 7 9 7888999999999999998876 89999999999999999999999654 455699998
Q ss_pred eecc-ceeccC
Q 024324 252 MKSG-DVVTEE 261 (269)
Q Consensus 252 mksg-~V~r~~ 261 (269)
+... .+.+++
T Consensus 234 v~~~~~p~Rd~ 244 (382)
T PTZ00210 234 YNYYNRIWRRN 244 (382)
T ss_pred eCCCCccccCC
Confidence 6543 456555
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.88 E-value=4.4e-23 Score=163.74 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=62.4
Q ss_pred CChhHHHHHHHHHHHHHHHhccccccccchHHHH-------hhhhhh-ccCCCcc---cCccchh-hhh----hhhhhhh
Q 024324 23 TSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLS-------NFLKKS-MEQRPKV---LTVEDKL-MLL----GCKDLER 86 (269)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~~~~~-------~~~~~~-~~~~~~~---~~~~~~~-~~~----~~~~~~~ 86 (269)
|++|+++|||+|||+|+|||||||..||+.+... +++... ++|+++. ....|++ +|. +||+|||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq~LdK 80 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQSLDK 80 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998766553 222222 4565544 2455667 665 9999999
Q ss_pred hHHHhhhchhhhhhc
Q 024324 87 RIVEAEMDLTLAKSQ 101 (269)
Q Consensus 87 ~~~~le~ela~ar~~ 101 (269)
+|++||||||+||++
T Consensus 81 tIS~LEMELAaARa~ 95 (95)
T PF13334_consen 81 TISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999974
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=98.85 E-value=1.3e-08 Score=92.98 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=62.7
Q ss_pred EEEEEecCCCC-hhhhhhhhhccCCCcccccccccCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCC
Q 024324 121 AVIGVYTGFGS-HLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEE 199 (269)
Q Consensus 121 lvIgI~Sap~n-~~RRdaIR~TW~~~~~~l~~le~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~N 199 (269)
++|+|+|++.+ ..|=.+|.+||++... .+ .|+.-... +..+..+ .-.+++.-+ ...++-.
T Consensus 8 I~i~V~T~~k~h~tR~~~I~~TW~~~~~--------~~--~~ifsd~~------d~~l~~~--~~~~l~~~~-~~~~~~~ 68 (252)
T PF02434_consen 8 IFIAVKTTKKFHKTRAPAIKQTWAKRCN--------KQ--TFIFSDAE------DPSLPTV--TGVHLVNPN-CDAGHCR 68 (252)
T ss_dssp EEEEEE--GGGTTTTHHHHHHTGGGGSG--------GG--EEEEESS--------HHHHHH--HGGGEEE----------
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHhhcC--------Cc--eEEecCcc------ccccccc--cccccccCC-CcchhhH
Confidence 56899999974 5677899999997543 11 35332111 2334444 233444442 4444444
Q ss_pred ccHHHHHHHHHhh-hcCCceEEEEeCCceeeehhhHHHHHhccCCCCceEEEEee
Q 024324 200 LPKKAKFFFSTAV-QIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMK 253 (269)
Q Consensus 200 Lt~Kt~~~f~wa~-~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~mk 253 (269)
-+++.++.+.+.. ...++++++++|||+||++++|..+|..+.+...+|+|+-.
T Consensus 69 ~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~ 123 (252)
T PF02434_consen 69 KTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPS 123 (252)
T ss_dssp ----HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeec
Confidence 4455555444422 23578999999999999999999999999999999999853
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.78 E-value=1.9e-08 Score=96.89 Aligned_cols=112 Identities=19% Similarity=0.313 Sum_probs=86.4
Q ss_pred CcceEEEEEEecCCCChhhhh-hhhhccCCCcccccccccCCeEEEEEec-ccCCCCchhHHHHHHHHhhCCCEEEeCCC
Q 024324 116 GKKLLAVIGVYTGFGSHLNRN-VYRGSWMPKGDALKKLEERGVVIRFVIG-RSANRGDSLDRKIDAENRETKDFLILEGH 193 (269)
Q Consensus 116 ~~k~flvIgI~Sap~n~~RRd-aIR~TW~~~~~~l~~le~~~I~vrFvIG-~s~~~~~~l~~~I~~E~~~ygDIL~ld~f 193 (269)
.++..+++-|.|++.+..-|- ++=+||++..+ ++ .|+-= .+. +...+.= |..+ .
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~-------~~---~f~s~~~s~------------~~~~f~~-v~~~-~ 143 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD-------KG---IFFSPTLSK------------DDSRFPT-VYYN-L 143 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC-------cc---eecCccCCC------------CCCcCce-eecc-C
Confidence 356778888999998777665 89999997654 22 34331 111 1111222 2564 8
Q ss_pred ccccCCccHHHHHHHHHhhhc--CCceEEEEeCCceeeehhhHHHHHhccCCCCceEEEE
Q 024324 194 EEAQEELPKKAKFFFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGC 251 (269)
Q Consensus 194 vDsY~NLt~Kt~~~f~wa~~~--~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~ 251 (269)
.|+|+++-.||...|++.... -++++++|+|||+|+.++||..+|..+.+.+.+|+|+
T Consensus 144 ~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~ 203 (364)
T KOG2246|consen 144 PDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGY 203 (364)
T ss_pred CcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecc
Confidence 999999999999999998644 4899999999999999999999999999999999999
No 10
>PLN03153 hypothetical protein; Provisional
Probab=97.55 E-value=0.00045 Score=69.60 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=36.1
Q ss_pred cCCceEEEEeCCceeeehhhHHHHHhccCCCCceEEEE
Q 024324 214 IWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGC 251 (269)
Q Consensus 214 ~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~ 251 (269)
.+++++|+.+|||+|+.+++|+.+|+.+.+.+..|+|.
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs 245 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGG 245 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecc
Confidence 58999999999999999999999999999999999995
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.07 E-value=2.2 Score=43.72 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=43.1
Q ss_pred CccccCCccHHHH-HHHHHhhhcC--CceEEEEeCCceeeehhhHHHHHhccCCCCceEEEE
Q 024324 193 HEEAQEELPKKAK-FFFSTAVQIW--DAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGC 251 (269)
Q Consensus 193 fvDsY~NLt~Kt~-~~f~wa~~~~--~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~ 251 (269)
.+--|..-..|+. +.+.+...++ +.||++-+-||+|||...|+..+....-...+|+|-
T Consensus 71 ~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGE 132 (681)
T KOG3708|consen 71 NVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGE 132 (681)
T ss_pred ccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccch
Confidence 3333444455553 3445544443 678999999999999999999998877788999994
No 12
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=76.06 E-value=3 Score=38.25 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=37.9
Q ss_pred CceEEEEeCCceeeehhhHHHHHhccCCCCceEEEEeeccceeccCCcccccC
Q 024324 216 DAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEYIILSYL 268 (269)
Q Consensus 216 ~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~mksg~V~r~~~~K~~~~ 268 (269)
.-+-|+-+|||+.++.+.|-.-...++..|.--+|+.-..-....++.+|.|.
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~ 127 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYT 127 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccc
Confidence 46789999999999999998888888777766788764333344467778774
No 13
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=59.88 E-value=79 Score=26.80 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=45.3
Q ss_pred eEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHH
Q 024324 157 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 236 (269)
Q Consensus 157 I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~ 236 (269)
..+.+|...+.+. ....+ ++...+..+.... .+ | ..|.. .+..+....+.+|++-+|||+.+..+.|..
T Consensus 29 ~eiivvdd~s~d~---~~~~l-~~~~~~~~~~v~~--~~---~-~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 29 LEIIVVTDGDDEP---YLSIL-SQTVKYGGIFVIT--VP---H-PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CEEEEEeCCCChH---HHHHH-HhhccCCcEEEEe--cC---C-CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 4455666554432 12223 3455666666553 22 2 22433 223344445789999999999999999888
Q ss_pred HHhccC
Q 024324 237 LLDRSR 242 (269)
Q Consensus 237 ~L~~~~ 242 (269)
.++...
T Consensus 98 l~~~~~ 103 (235)
T cd06434 98 MLKPFE 103 (235)
T ss_pred HHHhcc
Confidence 887665
No 14
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.96 E-value=1e+02 Score=25.68 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=45.0
Q ss_pred eEEEEEecccCCCCchhHHHHH-HHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHH
Q 024324 157 VVIRFVIGRSANRGDSLDRKID-AENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (269)
Q Consensus 157 I~vrFvIG~s~~~~~~l~~~I~-~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~ 235 (269)
+.+..|-+.+.+. ....++ .....+..+..++ ..+ -.|. .|.. .+.++......+|++-+|+|..+..+.|.
T Consensus 29 ~eiivvdd~s~d~---t~~~~~~~~~~~~~~v~~~~-~~~-~~~~-g~~~-a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHSTDG---TVQILEFAAAKPNFQLKILN-NSR-VSIS-GKKN-ALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCCcC---hHHHHHHHHhCCCcceEEee-ccC-cccc-hhHH-HHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 5566666555432 223344 2222234455553 332 2232 3332 34566666789999999999999988887
Q ss_pred HHHhcc
Q 024324 236 GLLDRS 241 (269)
Q Consensus 236 ~~L~~~ 241 (269)
..+...
T Consensus 102 ~l~~~~ 107 (229)
T cd04192 102 TFVAFI 107 (229)
T ss_pred HHHHHh
Confidence 777644
No 15
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=57.48 E-value=68 Score=24.72 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=26.4
Q ss_pred HhhhcCCceEEEEeCCceeeehhhHHHHHhccCC-CCceEEEE
Q 024324 210 TAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG-QESAYIGC 251 (269)
Q Consensus 210 wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~-~~rlYiG~ 251 (269)
.+......+|++-+|||.++..+.|-..++.... .+.+.+|.
T Consensus 72 ~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 72 RGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 3444456679999999999998876666665433 34455554
No 16
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=47.97 E-value=1.2e+02 Score=23.10 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHhhhcCCceEEEEeCCceeeehhhHHHHHhccC
Q 024324 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR 242 (269)
Q Consensus 207 ~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~ 242 (269)
...++.+..+.+|++-+|+|..+....|...+....
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~ 104 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFF 104 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhc
Confidence 344555556899999999999998877777745443
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=47.36 E-value=1.1e+02 Score=25.94 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=44.3
Q ss_pred CeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHH
Q 024324 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (269)
Q Consensus 156 ~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~ 235 (269)
.+.+..+-+.+.+. ....++...+++..+.... .+ +.. +. ..+..+.+....+|++-+|||..+..+.|.
T Consensus 31 ~~evivvd~~s~d~---~~~~~~~~~~~~~~v~~i~--~~---~~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 31 LIEIIVVDGGSTDG---TREIVQEYAAKDPRIRLID--NP---KRI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred ccEEEEEeCCCCcc---HHHHHHHHHhcCCeEEEEe--CC---CCC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 34556665555443 2344555444444444442 11 211 11 235555555578999999999999988777
Q ss_pred HHHhccC
Q 024324 236 GLLDRSR 242 (269)
Q Consensus 236 ~~L~~~~ 242 (269)
..++...
T Consensus 101 ~~~~~~~ 107 (249)
T cd02525 101 ELVEALK 107 (249)
T ss_pred HHHHHHh
Confidence 7776543
No 18
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.05 E-value=1.8e+02 Score=23.98 Aligned_cols=63 Identities=13% Similarity=-0.038 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhcc
Q 024324 175 RKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (269)
Q Consensus 175 ~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~ 241 (269)
..+++....++ +..+ +.+.......-.-..+.+|. ..+.+|++-.|||..+..+.|-..++..
T Consensus 42 ~~~~~~~~~~~-i~~~--~~~~n~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 42 EWLTSLGDLDN-IVYL--RLPENLGGAGGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred HHHHHhcCCCc-eEEE--ECccccchhhHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHH
Confidence 44444444444 3333 22223333333445566665 5578999999999999977766655543
No 19
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=41.29 E-value=55 Score=27.72 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=39.9
Q ss_pred eEEEEEecccCCCCchhHHHHHHHHhhCCCE-EE-eCCCccccCCcc--HHHHHHHHHhhhcCCceEEEEeCCceeeehh
Q 024324 157 VVIRFVIGRSANRGDSLDRKIDAENRETKDF-LI-LEGHEEAQEELP--KKAKFFFSTAVQIWDAEFYVKVDDNIDLDLE 232 (269)
Q Consensus 157 I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDI-L~-ld~fvDsY~NLt--~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~ 232 (269)
+.+.++...+..+ ....+++-.+.|... +. +. . ..|.. .|.. .+.++......+|++-+|||+.+..+
T Consensus 31 ~~v~vvd~~~~~~---~~~~~~~~~~~~~~~~v~vi~--~--~~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~ 102 (228)
T PF13641_consen 31 LEVVVVDDGSDDE---TAEILRALAARYPRVRVRVIR--R--PRNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPD 102 (228)
T ss_dssp EEEEEEEE-SSS----GCTTHHHHHHTTGG-GEEEEE--------HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CH
T ss_pred eEEEEEECCCChH---HHHHHHHHHHHcCCCceEEee--c--CCCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHH
Confidence 4455555333332 223455556667653 22 21 1 12332 2333 34666666779999999999999998
Q ss_pred hHHHHHhcc
Q 024324 233 GLIGLLDRS 241 (269)
Q Consensus 233 ~L~~~L~~~ 241 (269)
.|...++..
T Consensus 103 ~l~~~~~~~ 111 (228)
T PF13641_consen 103 WLERLLAAF 111 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
No 20
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=41.26 E-value=67 Score=27.52 Aligned_cols=47 Identities=13% Similarity=0.021 Sum_probs=33.5
Q ss_pred cCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhccCC
Q 024324 197 QEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG 243 (269)
Q Consensus 197 Y~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~ 243 (269)
......|+-............++++-.|+|+.|+.+-|...+.....
T Consensus 12 ~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~ 58 (175)
T PF13506_consen 12 PRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLAD 58 (175)
T ss_pred CCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhC
Confidence 34556787655443222367899999999999999988888876543
No 21
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=41.04 E-value=3.2e+02 Score=25.91 Aligned_cols=81 Identities=10% Similarity=0.108 Sum_probs=48.1
Q ss_pred CeEEEEEecccCCCCchhHHHHHHHHhhCCC--EEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhh
Q 024324 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKD--FLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 233 (269)
Q Consensus 156 ~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygD--IL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~ 233 (269)
.+.+.|+...+.++. ...+++=.++|.+ +..+. ...-..-..|.-.... +......++++-+|+|+.+..+.
T Consensus 70 ~~EIivvdd~s~D~t---~~iv~~~~~~~p~~~i~~v~--~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~ 143 (373)
T TIGR03472 70 GFQMLFGVQDPDDPA---LAVVRRLRADFPDADIDLVI--DARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDY 143 (373)
T ss_pred CeEEEEEeCCCCCcH---HHHHHHHHHhCCCCceEEEE--CCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhH
Confidence 366777776665432 1233333456776 32221 1112233456654333 44556789999999999999998
Q ss_pred HHHHHhccC
Q 024324 234 LIGLLDRSR 242 (269)
Q Consensus 234 L~~~L~~~~ 242 (269)
|...++...
T Consensus 144 L~~lv~~~~ 152 (373)
T TIGR03472 144 LRQVVAPLA 152 (373)
T ss_pred HHHHHHHhc
Confidence 888776653
No 22
>PRK11204 N-glycosyltransferase; Provisional
Probab=38.15 E-value=3.6e+02 Score=25.64 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhccCCCCc
Q 024324 174 DRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES 246 (269)
Q Consensus 174 ~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~r 246 (269)
.+.+++..++|..+...+ . ..|.. |.. .+..+.+..+.+|++-.|+|..+..+.|...++.....|+
T Consensus 98 ~~~l~~~~~~~~~v~~i~-~---~~n~G-ka~-aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~ 164 (420)
T PRK11204 98 GEILDRLAAQIPRLRVIH-L---AENQG-KAN-ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPR 164 (420)
T ss_pred HHHHHHHHHhCCcEEEEE-c---CCCCC-HHH-HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence 345555666677665553 2 23433 543 3466666678899999999999999988888776533333
No 23
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=37.11 E-value=2.3e+02 Score=23.03 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=50.5
Q ss_pred CeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHH
Q 024324 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (269)
Q Consensus 156 ~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~ 235 (269)
.+.+..+-+.|.+.. ...+++..+++..+..+. +.. |. .|. ..+..+......+|++-+|+|.-...+.|.
T Consensus 29 ~~eiivvdd~s~d~t---~~~~~~~~~~~~~i~~i~-~~~---n~-G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTDRT---LEILRELAARDPRVKVIR-LSR---NF-GQQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCccH---HHHHHHHHhhCCCEEEEE-ecC---CC-CcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 345555655555432 234455555666665553 322 32 122 233444444467999999999999887777
Q ss_pred HHHhccCCCCceEEEEe
Q 024324 236 GLLDRSRGQESAYIGCM 252 (269)
Q Consensus 236 ~~L~~~~~~~rlYiG~m 252 (269)
..+........+..|+.
T Consensus 100 ~l~~~~~~~~~~v~g~~ 116 (181)
T cd04187 100 EMLAKWEEGYDVVYGVR 116 (181)
T ss_pred HHHHHHhCCCcEEEEEe
Confidence 77765444455555653
No 24
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=35.70 E-value=2.6e+02 Score=26.48 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=59.4
Q ss_pred cCCeEEEEEecccCCCCchhHHHHHHHH----------hhCCCEEEeC-CCccccCCccHHHHHHHH-------------
Q 024324 154 ERGVVIRFVIGRSANRGDSLDRKIDAEN----------RETKDFLILE-GHEEAQEELPKKAKFFFS------------- 209 (269)
Q Consensus 154 ~~~I~vrFvIG~s~~~~~~l~~~I~~E~----------~~ygDIL~ld-~fvDsY~NLt~Kt~~~f~------------- 209 (269)
..-|.+-|++|.+..-+ ...+.++++. ..|+-|.++. +|.+.- .++.+-...+.
T Consensus 54 ~~lIsLgfLv~d~~e~d-~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~-~~~~~~RH~~~~Q~~RR~~mAraR 131 (269)
T PF03452_consen 54 HELISLGFLVSDSSEFD-NTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQL-SQDRSERHAFEVQRPRRRAMARAR 131 (269)
T ss_pred chheEEEEEcCCCchhH-HHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccc-cCchhhccchhhHHHHHHHHHHHH
Confidence 34588899999987322 2233444333 3466666642 132211 33333222221
Q ss_pred ----HhhhcCCceEEEEeCCceeeehhhHHHHHhccCC---CCceEEEEee
Q 024324 210 ----TAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG---QESAYIGCMK 253 (269)
Q Consensus 210 ----wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~---~~rlYiG~mk 253 (269)
...=.+..+|++=.|=||.-..+.|++.|-.+.. -|++|.++..
T Consensus 132 N~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~~~~ 182 (269)
T PF03452_consen 132 NFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRRYYD 182 (269)
T ss_pred HHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeecccc
Confidence 1111247899999999999999999999988764 3677777554
No 25
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=35.62 E-value=1.9e+02 Score=27.70 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.4
Q ss_pred ceEEEEeCCceeeehhhHHHHHhcc
Q 024324 217 AEFYVKVDDNIDLDLEGLIGLLDRS 241 (269)
Q Consensus 217 a~F~lKvDDDvfVNl~~L~~~L~~~ 241 (269)
.+|++-+|+|+.++.+.|...++..
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~ 158 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARA 158 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHH
Confidence 7999999999999988877777654
No 26
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=35.48 E-value=2.7e+02 Score=23.37 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=51.4
Q ss_pred CeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHH
Q 024324 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (269)
Q Consensus 156 ~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~ 235 (269)
.+.+..|-+.|.+.. ...+++..++++..+++= ..+ .|.- +. ..+..+......+|++-+|+|.....+.|.
T Consensus 30 ~~eiivvdd~S~D~t---~~~~~~~~~~~~~~i~~i-~~~--~n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKDGT---AEVARKLARKNPALIRVL-TLP--KNRG-KG-GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCCch---HHHHHHHHHhCCCcEEEE-Ecc--cCCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 455666666665432 344556666777653321 111 1221 21 223334444467999999999999988888
Q ss_pred HHHhc-cCCCCceEEEE
Q 024324 236 GLLDR-SRGQESAYIGC 251 (269)
Q Consensus 236 ~~L~~-~~~~~rlYiG~ 251 (269)
..++. ..+...+.+|.
T Consensus 102 ~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 102 KLEEALKTSGYDIAIGS 118 (211)
T ss_pred HHHHHHhccCCcEEEEE
Confidence 88876 33445666775
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.02 E-value=2.1e+02 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhcc
Q 024324 200 LPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (269)
Q Consensus 200 Lt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~ 241 (269)
+..-....++.+ +.+|++-+|||..+..+.+...+...
T Consensus 62 ~~~a~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~~~~~ 99 (166)
T cd04186 62 FGAGNNQGIREA----KGDYVLLLNPDTVVEPGALLELLDAA 99 (166)
T ss_pred hHHHhhHHHhhC----CCCEEEEECCCcEECccHHHHHHHHH
Confidence 333333444444 78999999999999998888887753
No 28
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=34.39 E-value=63 Score=27.26 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=29.1
Q ss_pred HHHhhhcCCceEEEEeCCceeeehhhHHHHHhccCCCCc
Q 024324 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES 246 (269)
Q Consensus 208 f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~r 246 (269)
+..+.+..+.+|++-+|+|.++..+.|...+......++
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~ 114 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPK 114 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCC
Confidence 344555557899999999999999888888876544343
No 29
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=34.33 E-value=2.7e+02 Score=23.16 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=28.0
Q ss_pred cCCceEEEEeCCceeeehhhHHHHHhc-cCCCCceEEEE
Q 024324 214 IWDAEFYVKVDDNIDLDLEGLIGLLDR-SRGQESAYIGC 251 (269)
Q Consensus 214 ~~~a~F~lKvDDDvfVNl~~L~~~L~~-~~~~~rlYiG~ 251 (269)
....+|++-+|+|..+..+.|...+.. ..+.+.+..|.
T Consensus 76 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 114 (224)
T cd06442 76 AARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGS 114 (224)
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 335689999999999998888888776 34455555554
No 30
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=32.49 E-value=53 Score=29.71 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=24.7
Q ss_pred CChhHHHHHHHHHHHHHHHhc------cccccccchHH
Q 024324 23 TSKPSVVLAFFSCLAWLYVAG------RLWQDAENRTL 54 (269)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~------r~w~~~~~~~~ 54 (269)
+-...+++|-.||+.|++|++ =||+.+.+.+.
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t~~~ 43 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPTPSA 43 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCCHHH
Confidence 334578999999999999998 46988765433
No 31
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=30.00 E-value=51 Score=24.48 Aligned_cols=16 Identities=31% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 024324 27 SVVLAFFSCLAWLYVA 42 (269)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (269)
++++|++|+.+|.+++
T Consensus 42 ~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 42 VVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4588999999998875
No 32
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=29.71 E-value=4.5e+02 Score=25.62 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=53.7
Q ss_pred CeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHH
Q 024324 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (269)
Q Consensus 156 ~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~ 235 (269)
.+.+.++-..+.+. ..+.+++..++|..+-... .+ .|.. |.. .++.+....+.+|++-.|+|..+..+.|.
T Consensus 104 ~~eIivVdDgs~D~---t~~~~~~~~~~~~~v~vv~--~~--~n~G-ka~-AlN~gl~~a~~d~iv~lDAD~~~~~d~L~ 174 (444)
T PRK14583 104 NIEVIAINDGSSDD---TAQVLDALLAEDPRLRVIH--LA--HNQG-KAI-ALRMGAAAARSEYLVCIDGDALLDKNAVP 174 (444)
T ss_pred CeEEEEEECCCCcc---HHHHHHHHHHhCCCEEEEE--eC--CCCC-HHH-HHHHHHHhCCCCEEEEECCCCCcCHHHHH
Confidence 35555555444332 2344555556676654442 11 2322 433 45666666688999999999999999888
Q ss_pred HHHhccCCCCceEEEEeeccceec
Q 024324 236 GLLDRSRGQESAYIGCMKSGDVVT 259 (269)
Q Consensus 236 ~~L~~~~~~~rlYiG~mksg~V~r 259 (269)
..++.....++ +|++-..|...
T Consensus 175 ~lv~~~~~~~~--~g~v~g~~~~~ 196 (444)
T PRK14583 175 YLVAPLIANPR--TGAVTGNPRIR 196 (444)
T ss_pred HHHHHHHhCCC--eEEEEccceec
Confidence 87765433333 34444444333
No 33
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=27.71 E-value=3.2e+02 Score=21.88 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=49.5
Q ss_pred eEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHH
Q 024324 157 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 236 (269)
Q Consensus 157 I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~ 236 (269)
..+..+-..+.+. ....++.-..++..+..+. +.+ |.. |. ..+..+.+....+|++-.|+|..+..+.|..
T Consensus 29 ~eiivvd~~s~d~---~~~~~~~~~~~~~~~~~~~-~~~---n~G-~~-~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 29 YEIIVVDDGSTDG---TAEIARELAARVPRVRVIR-LSR---NFG-KG-AAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred EEEEEEcCCCCCC---hHHHHHHHHHhCCCeEEEE-ccC---CCC-cc-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 4444444444432 2345555566676654443 332 322 11 2334444555569999999999999888888
Q ss_pred HHhc-cCCCCceEEEE
Q 024324 237 LLDR-SRGQESAYIGC 251 (269)
Q Consensus 237 ~L~~-~~~~~rlYiG~ 251 (269)
.+.. ......+-.|.
T Consensus 100 l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 100 LLEKLLEGGADVVIGS 115 (185)
T ss_pred HHHHHhccCCcEEEEE
Confidence 8875 33444555554
No 34
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=27.16 E-value=3.9e+02 Score=22.71 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=25.5
Q ss_pred HHHhhhcCCceEEEEeCCceeeehhhHHHHHh
Q 024324 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLD 239 (269)
Q Consensus 208 f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~ 239 (269)
+..+......+|++-+|.|+.++.+.|...+.
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhh
Confidence 45555566889999999999999988888444
No 35
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=26.41 E-value=85 Score=20.09 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.1
Q ss_pred CChhHHHHHHHHHHHHHHHhcc
Q 024324 23 TSKPSVVLAFFSCLAWLYVAGR 44 (269)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r 44 (269)
+--|+.++.+|+|-..+.|=||
T Consensus 5 ~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 5 SLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHhccceeEEEec
Confidence 3458999999999999999887
No 36
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=26.32 E-value=45 Score=20.21 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.0
Q ss_pred hhhhhhhHHHhhhchhhhh
Q 024324 81 CKDLERRIVEAEMDLTLAK 99 (269)
Q Consensus 81 ~~~~~~~~~~le~ela~ar 99 (269)
+..+..+|+.||-+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3467788999999998765
No 37
>PF04786 Baculo_DNA_bind: ssDNA binding protein ; InterPro: IPR006871 This is a family of Baculovirus ssDNA-binding proteins.
Probab=25.79 E-value=47 Score=30.81 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=29.4
Q ss_pred hCCCEEEeC-CCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhH
Q 024324 183 ETKDFLILE-GHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGL 234 (269)
Q Consensus 183 ~ygDIL~ld-~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L 234 (269)
.|||++.+. +....|.+.-.+.+..+ ..|..+..+|.+|+++||+|.=
T Consensus 94 ~fG~Fl~i~w~~~~~~n~v~~~im~~y----~~~~~~~~i~lq~~~~vnlP~d 142 (248)
T PF04786_consen 94 TFGEFLSISWSNMPVHNNVFGNIMGKY----FKWEEDEPIKLQNSVCVNLPKD 142 (248)
T ss_pred CCCCeEEEecCChHHHHHHHHHHHHHH----hcccCCCcEEeccceEEEcCCc
Confidence 589998863 12333333222222111 1355678999999999999875
No 38
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=25.71 E-value=1.1e+02 Score=29.66 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=32.6
Q ss_pred HHHHHHhhhcCCceEEEEeCCceeeehh---hHHHHHhccCCCCceEE
Q 024324 205 KFFFSTAVQIWDAEFYVKVDDNIDLDLE---GLIGLLDRSRGQESAYI 249 (269)
Q Consensus 205 ~~~f~wa~~~~~a~F~lKvDDDvfVNl~---~L~~~L~~~~~~~rlYi 249 (269)
+.++.|+.+..+.++++=+|||+.+.++ -+-..|......++++.
T Consensus 86 k~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ 133 (334)
T cd02514 86 KWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC 133 (334)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE
Confidence 3477777777789999999999999998 34555554445566653
No 39
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=25.45 E-value=4e+02 Score=22.18 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=46.2
Q ss_pred CeEEEEEecccCCCCchhHHHHHHHHhhCC--CEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhh
Q 024324 156 GVVIRFVIGRSANRGDSLDRKIDAENRETK--DFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 233 (269)
Q Consensus 156 ~I~vrFvIG~s~~~~~~l~~~I~~E~~~yg--DIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~ 233 (269)
.+.+.+|...+.+. . ...+++-...|. ++........ .....|... +..+......+|++-.|+|+.+..+.
T Consensus 30 ~~eiivVdd~s~d~--t-~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~ 103 (196)
T cd02520 30 KYEILFCVQDEDDP--A-IPVVRKLIAKYPNVDARLLIGGEK--VGINPKVNN-LIKGYEEARYDILVISDSDISVPPDY 103 (196)
T ss_pred CeEEEEEeCCCcch--H-HHHHHHHHHHCCCCcEEEEecCCc--CCCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhH
Confidence 36677777666543 2 234555555565 3322210111 122345432 34455556789999999999998888
Q ss_pred HHHHHhc
Q 024324 234 LIGLLDR 240 (269)
Q Consensus 234 L~~~L~~ 240 (269)
|...+..
T Consensus 104 l~~l~~~ 110 (196)
T cd02520 104 LRRMVAP 110 (196)
T ss_pred HHHHHHH
Confidence 8777765
No 40
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=24.53 E-value=1.3e+02 Score=25.55 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHhhhcCCceEEEEeCCceeeehhhHHHHHhccCCCCceEEEE
Q 024324 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGC 251 (269)
Q Consensus 209 ~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~ 251 (269)
..+...-..+|++-+|+|..+..+.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 3444555779999999999999888776665543334445565
No 41
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=23.73 E-value=56 Score=29.51 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHhcc------ccccccchHH
Q 024324 25 KPSVVLAFFSCLAWLYVAGR------LWQDAENRTL 54 (269)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~r------~w~~~~~~~~ 54 (269)
...+++|-.||+.|++|++- ||+.+.+.+.
T Consensus 8 ~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t~~~ 43 (196)
T PF08229_consen 8 GTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPTDEA 43 (196)
T ss_pred eeeeehHhhHHHHHHHHHcccchhHHhcCCCCCHHH
Confidence 35679999999999999984 6988665433
No 42
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=23.45 E-value=65 Score=24.86 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=21.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccc
Q 024324 21 IHTSKPSVVLAFFSCLAWLYVAGRL 45 (269)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~r~ 45 (269)
.-..-|.+++-++|..||.+++.+|
T Consensus 43 yt~~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 43 YTHTWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445578999999999999999986
No 43
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=23.14 E-value=1.2e+02 Score=24.98 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=31.2
Q ss_pred HHHhhhcCCceEEEEeCCceeeehhhHHHHHhccCCCC--ceEEEEe
Q 024324 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQE--SAYIGCM 252 (269)
Q Consensus 208 f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~--rlYiG~m 252 (269)
+..+....+.+|++-.|+|..+..+.|...++.....+ .++.|++
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 44455556789999999999999888888777643222 3444543
No 44
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=22.13 E-value=1.1e+02 Score=27.39 Aligned_cols=35 Identities=6% Similarity=-0.134 Sum_probs=26.3
Q ss_pred HHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhcc
Q 024324 206 FFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (269)
Q Consensus 206 ~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~ 241 (269)
.++++|.+. +++|++-.|||..+..+.|...++..
T Consensus 64 ~Gi~~a~~~-~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 64 QGLDASFRR-GVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred HHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 456666543 68999999999999987777766543
No 45
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=21.65 E-value=1.8e+02 Score=23.42 Aligned_cols=34 Identities=6% Similarity=0.104 Sum_probs=26.4
Q ss_pred HHHhhhcCCceEEEEeCCceeeehhhHHHHHhcc
Q 024324 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (269)
Q Consensus 208 f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~ 241 (269)
+..+.+....+|++-.|+|..+..+.|...++..
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 3445555678999999999999888777777655
No 46
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=21.64 E-value=3.4e+02 Score=26.25 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=52.1
Q ss_pred cCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCc--cccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeeh
Q 024324 154 ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE--EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDL 231 (269)
Q Consensus 154 ~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fv--DsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl 231 (269)
..++.+.|+=|++ .+++.|..=....--.+-++ +- +.+..-+.=-..+..|+.+.|+..+++-+|=|+|...
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~-~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLD-FGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEe-cCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 3456666776654 34555555544444445554 32 2232222223456778888899999999999999999
Q ss_pred hhHHHHHh
Q 024324 232 EGLIGLLD 239 (269)
Q Consensus 232 ~~L~~~L~ 239 (269)
++..++|+
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999884
No 47
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=21.49 E-value=2e+02 Score=24.38 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHH
Q 024324 204 AKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLL 238 (269)
Q Consensus 204 t~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L 238 (269)
.-.++++|... +.+|++-.|||+.++.+.|...+
T Consensus 64 ~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 64 LNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 34456665443 67999999999999988888875
No 48
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=21.45 E-value=4.6e+02 Score=21.46 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=33.2
Q ss_pred HHHHHHhhh-cCCceEEEEeCCceeeehhhHHHHHhccCCCCceEEEEe
Q 024324 205 KFFFSTAVQ-IWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 252 (269)
Q Consensus 205 ~~~f~wa~~-~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~m 252 (269)
..++.++.. ..+.+|++-+|.|+.+..+.|...+......+.+..|+.
T Consensus 69 n~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~ 117 (183)
T cd06438 69 DFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYY 117 (183)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEE
Confidence 344555431 235889999999999998888777776654455666654
No 49
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=20.61 E-value=4.7e+02 Score=21.29 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHhhhcCCceEEEEeCCceeeehhhHHHHHhcc
Q 024324 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (269)
Q Consensus 208 f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~ 241 (269)
+.++......+|++-.|+|..+..+.|...++..
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 3444444567999999999999998888888765
No 50
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.08 E-value=7.1e+02 Score=23.31 Aligned_cols=87 Identities=6% Similarity=0.062 Sum_probs=48.5
Q ss_pred CeEEEEEecccCCCCchhHHHHHHHHhhCCC-EEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhH
Q 024324 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKD-FLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGL 234 (269)
Q Consensus 156 ~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygD-IL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L 234 (269)
.+.+.+|-..|.+.. ...+++-.+.+++ ++... +.. |. .|.. .+..+....+.+|++-.|+|.-.+++.+
T Consensus 38 ~~EIIvVDDgS~D~T---~~il~~~~~~~~~~v~~i~-~~~---n~-G~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 38 EYEILLIDDGSSDNS---AEMLVEAAQAPDSHIVAIL-LNR---NY-GQHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CEEEEEEeCCCCCcH---HHHHHHHHhhcCCcEEEEE-eCC---CC-CHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 467788887776642 2223333344454 33332 222 22 2211 1223333447899999999999999888
Q ss_pred HHHHhccCCCCceEEEE
Q 024324 235 IGLLDRSRGQESAYIGC 251 (269)
Q Consensus 235 ~~~L~~~~~~~rlYiG~ 251 (269)
...++.......+-.|+
T Consensus 109 ~~l~~~~~~~~DvV~~~ 125 (325)
T PRK10714 109 PRLVAKADEGYDVVGTV 125 (325)
T ss_pred HHHHHHHHhhCCEEEEE
Confidence 88887653333343343
Done!