Query 024324
Match_columns 269
No_of_seqs 252 out of 885
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.5 8E-14 2.8E-18 127.2 12.0 116 118-253 12-130 (280)
2 1omz_A Alpha-1,4-N-acetylhexos 47.5 13 0.00046 33.9 3.6 37 216-252 106-142 (293)
3 1qg8_A Protein (spore coat pol 25.4 47 0.0016 27.2 3.1 35 207-241 79-113 (255)
4 2d7i_A Polypeptide N-acetylgal 24.1 2E+02 0.007 27.5 7.8 84 158-249 146-229 (570)
5 1vf5_H Protein PET N; photosyn 24.0 54 0.0018 20.1 2.3 23 22-44 4-26 (29)
6 1q90_N Cytochrome B6F complex 23.4 55 0.0019 20.3 2.3 22 23-44 7-28 (31)
7 1xhb_A Polypeptide N-acetylgal 23.1 3.2E+02 0.011 24.9 8.7 77 158-242 63-140 (472)
8 3ra3_B P2F; coiled coil domain 21.0 38 0.0013 20.2 1.2 16 83-98 11-26 (28)
9 4fix_A UDP-galactofuranosyl tr 19.3 2E+02 0.0069 28.5 6.8 37 205-241 257-293 (657)
10 3c5o_A UPF0311 protein RPA1785 18.1 44 0.0015 27.3 1.4 20 214-233 69-88 (157)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.51 E-value=8e-14 Score=127.16 Aligned_cols=116 Identities=15% Similarity=0.261 Sum_probs=83.0
Q ss_pred ceEEEEEEecCCC-ChhhhhhhhhccCCCcccccccccCCeEEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCc--
Q 024324 118 KLLAVIGVYTGFG-SHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE-- 194 (269)
Q Consensus 118 k~flvIgI~Sap~-n~~RRdaIR~TW~~~~~~l~~le~~~I~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fv-- 194 (269)
.-.++|+|+|++. +..|+.+||+||++... .. .||.+..++ ..+... ..++++..+ +.
T Consensus 12 ~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~-------~~---~fifsd~~d------~~l~~~--~~~~~~~~~-~~~~ 72 (280)
T 2j0a_A 12 LGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR-------QQ---TFIFTDSPD------ERLQER--LGPHLVVTQ-CSAE 72 (280)
T ss_dssp GGGEEEEEECCGGGTTTTHHHHHHTGGGGSG-------GG---EEEEESSCC------HHHHHH--HGGGEEECC-C---
T ss_pred cccEEEEEECcHHHHHHHHHHHHHHHhccCC-------Cc---eEEEcCCCc------cccccc--ccccceecc-cccc
Confidence 3456689999998 56799999999986432 11 244433222 223322 356788764 53
Q ss_pred cccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhccCCCCceEEEEee
Q 024324 195 EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMK 253 (269)
Q Consensus 195 DsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~mk 253 (269)
+++.+|+.|+...+.+.. ..+++|++|+|||+|||+++|+.+|..+.+...+|+|+..
T Consensus 73 ~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~ 130 (280)
T 2j0a_A 73 HSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPS 130 (280)
T ss_dssp ----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEE
T ss_pred ccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEec
Confidence 468899999999988753 2589999999999999999999999999888899999854
No 2
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=47.53 E-value=13 Score=33.92 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=30.6
Q ss_pred CceEEEEeCCceeeehhhHHHHHhccCCCCceEEEEe
Q 024324 216 DAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 252 (269)
Q Consensus 216 ~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~rlYiG~m 252 (269)
..+-|+-+|||+.++.+.|..-...++..|.-.+|+.
T Consensus 106 ~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~ 142 (293)
T 1omz_A 106 ETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 142 (293)
T ss_dssp CSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESC
T ss_pred CcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCc
Confidence 5678999999999999999888887776666567764
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=25.41 E-value=47 Score=27.21 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHHHhhhcCCceEEEEeCCceeeehhhHHHHHhcc
Q 024324 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (269)
Q Consensus 207 ~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~ 241 (269)
.+..+......+|++-+|||.++..+.|...++..
T Consensus 79 a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~ 113 (255)
T 1qg8_A 79 LINQAIEMAEGEYITYATDDNIYMPDRLLKMVREL 113 (255)
T ss_dssp HHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHH
Confidence 44556666688999999999999988777766654
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=24.06 E-value=2e+02 Score=27.46 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=47.6
Q ss_pred EEEEEecccCCCCchhHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHH
Q 024324 158 VIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGL 237 (269)
Q Consensus 158 ~vrFvIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~ 237 (269)
.|+.|-..|.+. .+...+++-.+.+..|-.+. ..+ -.++..=. ..+......+|++-.|+|+.++.+-|-..
T Consensus 146 EIIVVDDgS~D~--tl~~~l~~~~~~~~~v~vi~-~~~-n~G~~~A~----N~G~~~A~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 146 EIVLVDDFSDRE--HLKKPLEDYMALFPSVRILR-TKK-REGLIRTR----MLGASVATGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp EEEEEECSCCCG--GGTHHHHHHHTTSTTEEEEE-CSS-CCCHHHHH----HHHHHHCCSSEEEECCSSEEECTTCSHHH
T ss_pred EEEEEECCCCcH--HHHHHHHHHHHhCCeEEEEE-CCC-CCCHHHHH----HHHHHhcCCCEEEEEcCCccccccHHHHH
Confidence 455555444432 32345666667777666653 222 22333323 33333446899999999999998777666
Q ss_pred HhccCCCCceEE
Q 024324 238 LDRSRGQESAYI 249 (269)
Q Consensus 238 L~~~~~~~rlYi 249 (269)
++.....+..-+
T Consensus 218 l~~l~~~~~~vv 229 (570)
T 2d7i_A 218 LDRIARNRKTIV 229 (570)
T ss_dssp HHHHHHCTTEEE
T ss_pred HHHHHhCCCEEE
Confidence 665433333333
No 5
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=24.00 E-value=54 Score=20.09 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.8
Q ss_pred CCChhHHHHHHHHHHHHHHHhcc
Q 024324 22 HTSKPSVVLAFFSCLAWLYVAGR 44 (269)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r 44 (269)
.+--|+.++.+|+|-..+.|-||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 45569999999999999999887
No 6
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=23.42 E-value=55 Score=20.33 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=18.9
Q ss_pred CChhHHHHHHHHHHHHHHHhcc
Q 024324 23 TSKPSVVLAFFSCLAWLYVAGR 44 (269)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r 44 (269)
+--|+.++.+|+|-..+.|-||
T Consensus 7 sl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHhheeeEEEEEec
Confidence 3458999999999999999887
No 7
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=23.06 E-value=3.2e+02 Score=24.87 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=45.2
Q ss_pred EEEEEecccCCCCchhHHHHHHHHhhCC-CEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHH
Q 024324 158 VIRFVIGRSANRGDSLDRKIDAENRETK-DFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 236 (269)
Q Consensus 158 ~vrFvIG~s~~~~~~l~~~I~~E~~~yg-DIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~ 236 (269)
.+..|-..|.+. .....+++-.+.+. .+-.+. ..+ |.. +. .....+......+|++-.|+|+.++.+.|..
T Consensus 63 EIIvVDd~S~d~--~t~~~l~~~~~~~~~~v~vi~-~~~---n~G-~~-~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 63 EIVLVDDASERD--FLKRPLESYVKKLKVPVHVIR-MEQ---RSG-LI-RARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEECSCCCG--GGTHHHHHHHHSSSSCEEEEE-CSS---CCC-HH-HHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred EEEEEECCCCcH--HHHHHHHHHHHHCCCcEEEEE-CCC---CCC-hH-HHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 455555444432 13345666556777 455553 222 322 22 2333444455789999999999999888877
Q ss_pred HHhccC
Q 024324 237 LLDRSR 242 (269)
Q Consensus 237 ~L~~~~ 242 (269)
.++...
T Consensus 135 ll~~~~ 140 (472)
T 1xhb_A 135 LLARIK 140 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 8
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.01 E-value=38 Score=20.15 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=12.6
Q ss_pred hhhhhHHHhhhchhhh
Q 024324 83 DLERRIVEAEMDLTLA 98 (269)
Q Consensus 83 ~~~~~~~~le~ela~a 98 (269)
.|...|++||+|.|+-
T Consensus 11 rlkqeiaaleyeiaal 26 (28)
T 3ra3_B 11 RLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4667789999998863
No 9
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=19.27 E-value=2e+02 Score=28.46 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhcc
Q 024324 205 KFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (269)
Q Consensus 205 ~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~ 241 (269)
-.+++.|....+++|++-.|||+.+..+.|...+...
T Consensus 257 N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l 293 (657)
T 4fix_A 257 SRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMH 293 (657)
T ss_dssp HHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHH
Confidence 3456666655578999999999999988877776643
No 10
>3c5o_A UPF0311 protein RPA1785; beta-barrels, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodopseudomonas palustris}
Probab=18.05 E-value=44 Score=27.34 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.7
Q ss_pred cCCceEEEEeCCceeeehhh
Q 024324 214 IWDAEFYVKVDDNIDLDLEG 233 (269)
Q Consensus 214 ~~~a~F~lKvDDDvfVNl~~ 233 (269)
..+++|++|+||..+|.+.+
T Consensus 69 ~ldary~l~TdDGa~I~v~~ 88 (157)
T 3c5o_A 69 ELEAKYAFETDDGAVVYVEN 88 (157)
T ss_dssp EEEEEEEEEETTCCEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEE
Confidence 35899999999999887743
Done!