Query 024324
Match_columns 269
No_of_seqs 252 out of 885
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 06:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024324.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024324hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 48.0 9.4 0.00068 28.1 4.3 38 209-246 74-111 (265)
2 d1q90n_ f.23.27.1 (N:) PetN su 46.4 6.5 0.00047 22.7 2.3 20 25-44 9-28 (31)
3 d1xhba2 c.68.1.17 (A:95-422) P 27.4 73 0.0053 25.3 7.1 63 173-240 69-131 (328)
4 d1qg8a_ c.68.1.1 (A:) Spore co 24.8 57 0.0042 24.7 5.7 32 208-239 80-111 (255)
5 d1umua_ b.87.1.1 (A:) UmuD' {E 12.2 37 0.0027 24.0 1.3 32 193-231 2-33 (105)
6 d1jb0j_ f.23.18.1 (J:) Subunit 11.4 88 0.0064 19.0 2.7 27 23-49 9-36 (41)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 9.9 1.2E+02 0.0085 16.5 2.6 20 25-44 5-24 (27)
8 d2cs4a1 d.15.1.5 (A:8-91) Ras 8.8 1.8E+02 0.013 19.9 4.1 63 160-222 12-78 (84)
9 d1jb0x_ f.23.20.1 (X:) Subunit 8.3 1.4E+02 0.01 16.4 2.6 18 26-43 9-27 (29)
10 d1t6aa_ d.129.8.1 (A:) Rbstp22 7.7 67 0.0049 23.9 1.3 33 194-226 23-55 (124)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.04 E-value=9.4 Score=28.07 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=29.4
Q ss_pred HHhhhcCCceEEEEeCCceeeehhhHHHHHhccCCCCc
Q 024324 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES 246 (269)
Q Consensus 209 ~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~~~~~~r 246 (269)
..+......+|++-+|||..+..+.|...++.....+.
T Consensus 74 n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~ 111 (265)
T d1omza_ 74 LQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPD 111 (265)
T ss_dssp GSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTT
T ss_pred hhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCC
Confidence 34555567899999999999999988888876654443
No 2
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=46.40 E-value=6.5 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.187 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHhcc
Q 024324 25 KPSVVLAFFSCLAWLYVAGR 44 (269)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~r 44 (269)
-|..++++|||-+.+.|-||
T Consensus 9 awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 9 GWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhheeeEEEEEEec
Confidence 48889999999999999887
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.37 E-value=73 Score=25.29 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=38.3
Q ss_pred hHHHHHHHHhhCCCEEEeCCCccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeehhhHHHHHhc
Q 024324 173 LDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDR 240 (269)
Q Consensus 173 l~~~I~~E~~~ygDIL~ld~fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~~ 240 (269)
+...+++-.+++.+-+.+= ..+.-.+.+. ....+......+|++-+|+|+.+..+.|...+..
T Consensus 69 ~~~~l~~~~~~~~~~i~vi-~~~~n~G~~~----a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~ 131 (328)
T d1xhba2 69 LKRPLESYVKKLKVPVHVI-RMEQRSGLIR----ARLKGAAVSRGQVITFLDAHCECTAGWLEPLLAR 131 (328)
T ss_dssp GTHHHHHHHHSSSSCEEEE-ECSSCCCHHH----HHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEE-EecccccchH----HHHHHHHhhhcceeeecCcccccChhHHHHHHHH
Confidence 3445555556666644431 2232222222 3355555567899999999999998887766554
No 4
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=24.80 E-value=57 Score=24.73 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHHhhhcCCceEEEEeCCceeeehhhHHHHHh
Q 024324 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLD 239 (269)
Q Consensus 208 f~wa~~~~~a~F~lKvDDDvfVNl~~L~~~L~ 239 (269)
+..+....+.+|++-+|+|.++....|...+.
T Consensus 80 ~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~ 111 (255)
T d1qg8a_ 80 INQAIEMAEGEYITYATDDNIYMPDRLLKMVR 111 (255)
T ss_dssp HHHHHHHCCCSEEEEEETTEEECTTHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHH
Confidence 34555666889999999999998766555444
No 5
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=12.21 E-value=37 Score=23.99 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=23.0
Q ss_pred CccccCCccHHHHHHHHHhhhcCCceEEEEeCCceeeeh
Q 024324 193 HEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDL 231 (269)
Q Consensus 193 fvDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDDvfVNl 231 (269)
++|.+-+|.. +.+.++++.|++++..|.+.+.
T Consensus 2 yiE~~i~l~~-------~lv~~~~~~f~~rV~GdSM~~~ 33 (105)
T d1umua_ 2 YVEQRIDLNQ-------LLIQHPSATYFVKASGDSMIDG 33 (105)
T ss_dssp CCCCCCCHHH-------HHCSCGGGEEEEECCSSTTGGG
T ss_pred ccccccChhH-------HhccCCCceEEEEEcCCccccC
Confidence 5666655543 3356778899999999988765
No 6
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=11.36 E-value=88 Score=18.97 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=19.7
Q ss_pred CChhHHHHHHHHHHHHHHH-hccccccc
Q 024324 23 TSKPSVVLAFFSCLAWLYV-AGRLWQDA 49 (269)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~-~~r~w~~~ 49 (269)
|.-+++...-++|.||+++ .||+..|+
T Consensus 9 stAPVla~~w~~~tAG~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 9 STAPVLAAIWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 4456777778899999887 57776653
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.91 E-value=1.2e+02 Score=16.51 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHhcc
Q 024324 25 KPSVVLAFFSCLAWLYVAGR 44 (269)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~r 44 (269)
-|+-+|.+|..-..|.+-||
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 37888888888888888777
No 8
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.83 E-value=1.8e+02 Score=19.88 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=38.8
Q ss_pred EEEecccCCCC-chhHHHHHHHHhhCCCEEEeCCCccccCCc--cHHHHHH-HHHhhhcCCceEEEE
Q 024324 160 RFVIGRSANRG-DSLDRKIDAENRETKDFLILEGHEEAQEEL--PKKAKFF-FSTAVQIWDAEFYVK 222 (269)
Q Consensus 160 rFvIG~s~~~~-~~l~~~I~~E~~~ygDIL~ld~fvDsY~NL--t~Kt~~~-f~wa~~~~~a~F~lK 222 (269)
++|.|.++... ..+-.+|-+|..+.||..+....-+.-+-| ..|.+.. -+|..+..+.+|+|+
T Consensus 12 r~V~GVt~~TTC~DVV~aL~~~~g~~g~y~LvE~wR~~ER~L~~~~r~l~~l~~wG~~~~eV~f~Lr 78 (84)
T d2cs4a1 12 RIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPIISLNKWGQYASDVQLILR 78 (84)
T ss_dssp ECCSSBCSSSCHHHHHHHHHHHHSCCSEEEEEEEETTEEEECCSSSCHHHHHHTTGGGSTTCEEEEE
T ss_pred EEEeCCCCCCcHHHHHHHHHhccCCCccEEEEEecCCceeeCCCccCHHHHHHHhCcCCCceEEEEE
Confidence 67888887653 223345668899999987754333322222 3333333 347777779999986
No 9
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=8.28 E-value=1.4e+02 Score=16.38 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=10.7
Q ss_pred h-HHHHHHHHHHHHHHHhc
Q 024324 26 P-SVVLAFFSCLAWLYVAG 43 (269)
Q Consensus 26 ~-~~~~~~~~~~~~~~~~~ 43 (269)
| .|+|++-..++..||+.
T Consensus 9 wa~lllainflvaayyfaa 27 (29)
T d1jb0x_ 9 WAVLLLAINFLVAAYYFAA 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5 45555655566667653
No 10
>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.71 E-value=67 Score=23.89 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=21.8
Q ss_pred ccccCCccHHHHHHHHHhhhcCCceEEEEeCCc
Q 024324 194 EEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDN 226 (269)
Q Consensus 194 vDsY~NLt~Kt~~~f~wa~~~~~a~F~lKvDDD 226 (269)
.+-|...+.||-.-+.|+.....+-|-+...|+
T Consensus 23 ~~~Y~~~t~kTG~Ql~w~Y~~aAFPY~I~~~~~ 55 (124)
T d1t6aa_ 23 LERYQMALKKTGEQLGWAYEQAAFPYTVRIHES 55 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEETT
T ss_pred HHHHHHHHHhhhhhcchhhhcccCceEEEecce
Confidence 345888899999999998775333343444444
Done!