Query 024325
Match_columns 269
No_of_seqs 277 out of 2551
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0218 Predicted GTPase [Gene 100.0 6.2E-33 1.3E-37 219.7 19.3 188 79-266 11-198 (200)
2 COG0486 ThdF Predicted GTPase 100.0 2.5E-33 5.5E-38 246.1 17.0 232 11-267 141-378 (454)
3 COG2262 HflX GTPases [General 100.0 1E-32 2.2E-37 238.3 15.4 235 7-266 108-357 (411)
4 TIGR03156 GTP_HflX GTP-binding 100.0 4.3E-30 9.3E-35 226.1 17.4 233 8-263 106-350 (351)
5 PRK11058 GTPase HflX; Provisio 100.0 1.4E-29 3E-34 227.7 18.9 237 7-265 113-362 (426)
6 COG1159 Era GTPase [General fu 100.0 5.4E-29 1.2E-33 207.7 17.2 164 93-267 7-174 (298)
7 PRK05291 trmE tRNA modificatio 100.0 5.8E-28 1.3E-32 219.4 17.9 229 8-265 136-370 (449)
8 TIGR03598 GTPase_YsxC ribosome 100.0 2.4E-27 5.3E-32 190.7 18.0 170 84-254 10-179 (179)
9 PF02421 FeoB_N: Ferrous iron 100.0 2.3E-28 5E-33 189.8 10.5 153 93-260 1-156 (156)
10 PRK00454 engB GTP-binding prot 100.0 5.4E-26 1.2E-30 185.1 22.9 189 75-266 7-195 (196)
11 COG1160 Predicted GTPases [Gen 99.9 2.7E-27 5.8E-32 207.7 15.2 158 93-264 4-164 (444)
12 TIGR00436 era GTP-binding prot 99.9 3.6E-26 7.7E-31 195.5 18.3 161 94-266 2-165 (270)
13 COG1160 Predicted GTPases [Gen 99.9 6.4E-26 1.4E-30 199.1 17.2 170 91-266 177-352 (444)
14 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.1E-25 2.4E-30 203.5 19.0 229 8-264 128-359 (442)
15 PRK04213 GTP-binding protein; 99.9 8.3E-24 1.8E-28 173.2 20.2 170 91-266 8-193 (201)
16 PRK00089 era GTPase Era; Revie 99.9 4.1E-24 8.8E-29 184.9 18.6 162 93-265 6-171 (292)
17 PRK15494 era GTPase Era; Provi 99.9 3.1E-24 6.7E-29 188.6 17.5 163 92-266 52-217 (339)
18 cd01876 YihA_EngB The YihA (En 99.9 2.2E-23 4.9E-28 164.6 20.7 169 95-264 2-170 (170)
19 cd04171 SelB SelB subfamily. 99.9 1.9E-23 4E-28 164.9 19.3 156 94-262 2-163 (164)
20 PRK12298 obgE GTPase CgtA; Rev 99.9 1.9E-23 4.1E-28 186.1 18.2 161 94-266 161-334 (390)
21 PRK00093 GTP-binding protein D 99.9 4.1E-23 8.8E-28 188.2 20.7 170 91-265 172-344 (435)
22 TIGR03594 GTPase_EngA ribosome 99.9 3.4E-23 7.3E-28 188.4 19.8 170 91-265 171-344 (429)
23 cd01894 EngA1 EngA1 subfamily. 99.9 2.5E-23 5.5E-28 162.9 16.4 153 96-263 1-156 (157)
24 KOG1191 Mitochondrial GTPase [ 99.9 2.6E-24 5.7E-29 189.1 11.7 221 33-265 211-450 (531)
25 PRK03003 GTP-binding protein D 99.9 3.2E-23 7E-28 190.1 19.4 171 91-266 210-383 (472)
26 cd01889 SelB_euk SelB subfamil 99.9 3.4E-23 7.4E-28 168.4 17.3 160 93-265 1-186 (192)
27 PRK12299 obgE GTPase CgtA; Rev 99.9 4E-23 8.6E-28 180.6 18.6 163 92-267 158-330 (335)
28 cd01897 NOG NOG1 is a nucleola 99.9 5.6E-23 1.2E-27 163.2 17.1 159 93-264 1-167 (168)
29 cd01895 EngA2 EngA2 subfamily. 99.9 1.2E-22 2.5E-27 161.4 18.3 167 92-263 2-173 (174)
30 cd01878 HflX HflX subfamily. 99.9 1.1E-22 2.4E-27 167.0 17.9 157 90-263 39-203 (204)
31 PRK12297 obgE GTPase CgtA; Rev 99.9 5.7E-23 1.2E-27 184.0 17.5 156 94-266 160-328 (424)
32 PF00009 GTP_EFTU: Elongation 99.9 1.3E-22 2.7E-27 164.6 17.5 160 92-265 3-187 (188)
33 cd04163 Era Era subfamily. Er 99.9 2.2E-22 4.8E-27 158.5 18.1 160 93-263 4-167 (168)
34 cd01898 Obg Obg subfamily. Th 99.9 4.7E-23 1E-27 163.8 14.3 157 94-263 2-169 (170)
35 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2E-22 4.4E-27 159.8 17.6 157 93-265 1-166 (168)
36 TIGR02729 Obg_CgtA Obg family 99.9 8.1E-23 1.8E-27 178.5 16.3 159 92-264 157-328 (329)
37 PRK03003 GTP-binding protein D 99.9 1.8E-22 3.9E-27 185.1 19.3 160 91-265 37-199 (472)
38 PRK12296 obgE GTPase CgtA; Rev 99.9 1.3E-22 2.8E-27 184.0 17.7 162 92-267 159-342 (500)
39 PRK09518 bifunctional cytidyla 99.9 2.4E-22 5.3E-27 192.4 20.3 172 90-266 448-622 (712)
40 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3E-22 6.4E-27 156.6 16.9 152 93-264 2-156 (157)
41 cd00881 GTP_translation_factor 99.9 3.3E-22 7.1E-27 161.4 16.2 158 94-265 1-187 (189)
42 TIGR03594 GTPase_EngA ribosome 99.9 3.1E-22 6.7E-27 182.1 17.8 157 94-265 1-160 (429)
43 PRK09518 bifunctional cytidyla 99.9 7.9E-22 1.7E-26 188.9 18.8 161 90-265 273-436 (712)
44 cd01879 FeoB Ferrous iron tran 99.9 8.2E-22 1.8E-26 154.6 15.7 154 97-265 1-157 (158)
45 PRK00093 GTP-binding protein D 99.9 1.5E-21 3.3E-26 177.8 18.4 155 93-262 2-159 (435)
46 cd01888 eIF2_gamma eIF2-gamma 99.9 3.3E-21 7.1E-26 158.1 18.4 159 94-265 2-199 (203)
47 cd01884 EF_Tu EF-Tu subfamily. 99.9 5.9E-21 1.3E-25 155.3 18.0 157 93-262 3-190 (195)
48 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.3E-21 2.8E-26 155.2 12.6 156 94-262 1-166 (167)
49 TIGR00475 selB selenocysteine- 99.9 7.1E-21 1.5E-25 177.9 19.5 160 94-266 2-167 (581)
50 PRK09866 hypothetical protein; 99.9 1.9E-20 4E-25 171.2 21.0 117 139-263 231-351 (741)
51 cd01881 Obg_like The Obg-like 99.9 1.4E-21 3.1E-26 155.9 12.1 154 97-263 1-175 (176)
52 cd04154 Arl2 Arl2 subfamily. 99.9 5.7E-21 1.2E-25 152.7 15.0 153 91-262 13-172 (173)
53 cd01890 LepA LepA subfamily. 99.9 7.1E-21 1.5E-25 152.7 15.6 154 94-264 2-176 (179)
54 cd04166 CysN_ATPS CysN_ATPS su 99.9 3.6E-21 7.8E-26 158.4 14.1 149 94-256 1-185 (208)
55 PRK10512 selenocysteinyl-tRNA- 99.9 1.7E-20 3.8E-25 175.8 19.9 159 94-265 2-166 (614)
56 PRK09554 feoB ferrous iron tra 99.9 1.2E-20 2.5E-25 180.6 18.4 158 93-264 4-167 (772)
57 cd04138 H_N_K_Ras_like H-Ras/N 99.9 9.7E-21 2.1E-25 148.9 14.9 150 93-264 2-161 (162)
58 KOG1423 Ras-like GTPase ERA [C 99.9 7.6E-21 1.6E-25 158.4 14.5 174 91-266 71-272 (379)
59 cd04149 Arf6 Arf6 subfamily. 99.9 1.1E-20 2.4E-25 150.4 15.1 153 92-262 9-167 (168)
60 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6.9E-21 1.5E-25 149.9 13.5 153 94-262 1-159 (160)
61 PRK15467 ethanolamine utilizat 99.9 2.4E-20 5.2E-25 147.0 16.1 145 94-265 3-147 (158)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.2E-20 4.7E-25 147.5 15.6 152 93-265 3-164 (164)
63 COG0370 FeoB Fe2+ transport sy 99.9 1.1E-20 2.4E-25 173.1 15.5 156 93-265 4-164 (653)
64 cd04157 Arl6 Arl6 subfamily. 99.9 2E-20 4.2E-25 147.5 14.7 153 94-262 1-161 (162)
65 cd00880 Era_like Era (E. coli 99.9 5.8E-20 1.3E-24 143.1 16.6 159 97-264 1-163 (163)
66 cd04151 Arl1 Arl1 subfamily. 99.8 2.4E-20 5.3E-25 146.7 14.3 151 94-262 1-157 (158)
67 KOG1489 Predicted GTP-binding 99.8 1.4E-20 3E-25 157.6 13.1 157 92-263 196-365 (366)
68 cd04124 RabL2 RabL2 subfamily. 99.8 1.3E-19 2.8E-24 143.2 18.1 152 93-267 1-160 (161)
69 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.4E-20 7.4E-25 148.4 14.8 154 92-262 15-173 (174)
70 cd04136 Rap_like Rap-like subf 99.8 3.2E-20 6.9E-25 146.4 14.4 151 93-264 2-162 (163)
71 cd04155 Arl3 Arl3 subfamily. 99.8 2.6E-20 5.7E-25 148.5 14.1 155 91-262 13-172 (173)
72 cd04175 Rap1 Rap1 subgroup. T 99.8 2.4E-20 5.2E-25 147.6 13.7 151 93-265 2-163 (164)
73 TIGR02528 EutP ethanolamine ut 99.8 3.8E-20 8.2E-25 143.0 14.5 140 94-261 2-141 (142)
74 TIGR00491 aIF-2 translation in 99.8 7.6E-20 1.7E-24 170.1 19.1 157 92-264 4-215 (590)
75 cd01861 Rab6 Rab6 subfamily. 99.8 7.7E-20 1.7E-24 144.0 16.3 149 94-263 2-160 (161)
76 cd04150 Arf1_5_like Arf1-Arf5- 99.8 5.4E-20 1.2E-24 145.1 15.3 151 94-262 2-158 (159)
77 COG1084 Predicted GTPase [Gene 99.8 1.9E-19 4.2E-24 151.9 19.4 175 75-263 148-334 (346)
78 CHL00189 infB translation init 99.8 4.9E-20 1.1E-24 174.2 17.3 159 90-264 242-409 (742)
79 TIGR00487 IF-2 translation ini 99.8 8.5E-20 1.8E-24 170.1 18.5 156 91-262 86-247 (587)
80 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.9E-19 4E-24 149.5 18.7 113 137-262 83-220 (224)
81 smart00177 ARF ARF-like small 99.8 8.1E-20 1.7E-24 146.4 15.9 156 92-265 13-174 (175)
82 KOG0410 Predicted GTP binding 99.8 3.8E-21 8.1E-26 161.3 8.4 228 7-265 95-341 (410)
83 cd01891 TypA_BipA TypA (tyrosi 99.8 1.2E-19 2.7E-24 147.7 17.1 149 93-256 3-173 (194)
84 smart00178 SAR Sar1p-like memb 99.8 5.8E-20 1.2E-24 148.5 14.7 157 92-263 17-183 (184)
85 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 8.7E-20 1.9E-24 147.3 15.5 156 93-265 4-170 (183)
86 smart00173 RAS Ras subfamily o 99.8 5.9E-20 1.3E-24 145.1 14.1 151 94-265 2-162 (164)
87 cd04158 ARD1 ARD1 subfamily. 99.8 4.3E-20 9.3E-25 147.1 13.3 155 94-265 1-161 (169)
88 cd01864 Rab19 Rab19 subfamily. 99.8 2.1E-19 4.6E-24 142.3 16.9 154 92-263 3-164 (165)
89 PRK12317 elongation factor 1-a 99.8 6.8E-20 1.5E-24 166.4 15.9 151 91-255 5-195 (425)
90 cd01893 Miro1 Miro1 subfamily. 99.8 1.3E-19 2.8E-24 143.8 15.6 155 94-265 2-164 (166)
91 cd04139 RalA_RalB RalA/RalB su 99.8 1.5E-19 3.2E-24 142.5 15.8 150 94-265 2-162 (164)
92 COG1163 DRG Predicted GTPase [ 99.8 7.9E-20 1.7E-24 153.7 14.9 161 88-268 59-292 (365)
93 cd00878 Arf_Arl Arf (ADP-ribos 99.8 7.8E-20 1.7E-24 143.7 14.0 152 94-262 1-157 (158)
94 PRK05306 infB translation init 99.8 9.3E-20 2E-24 173.7 17.1 158 90-263 288-450 (787)
95 cd04119 RJL RJL (RabJ-Like) su 99.8 2E-19 4.2E-24 142.3 16.2 150 94-264 2-166 (168)
96 PTZ00133 ADP-ribosylation fact 99.8 2E-19 4.4E-24 145.0 15.9 156 92-265 17-178 (182)
97 cd01867 Rab8_Rab10_Rab13_like 99.8 5.4E-19 1.2E-23 140.4 18.0 155 92-264 3-164 (167)
98 PF01926 MMR_HSR1: 50S ribosom 99.8 7.9E-20 1.7E-24 136.5 12.4 113 94-212 1-116 (116)
99 cd01866 Rab2 Rab2 subfamily. 99.8 4.3E-19 9.4E-24 141.1 17.4 154 92-264 4-165 (168)
100 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.8E-19 8.3E-24 140.9 16.9 153 93-265 3-164 (166)
101 cd01868 Rab11_like Rab11-like. 99.8 4.2E-19 9.2E-24 140.5 17.1 153 92-264 3-164 (165)
102 PLN00223 ADP-ribosylation fact 99.8 2.2E-19 4.7E-24 144.7 15.6 154 92-265 17-178 (181)
103 cd01865 Rab3 Rab3 subfamily. 99.8 3.5E-19 7.7E-24 141.1 16.6 150 93-264 2-162 (165)
104 PF10662 PduV-EutP: Ethanolami 99.8 1.8E-19 4E-24 137.0 14.0 141 93-262 2-143 (143)
105 cd04140 ARHI_like ARHI subfami 99.8 2.8E-19 6.1E-24 141.7 15.8 150 93-263 2-163 (165)
106 cd01896 DRG The developmentall 99.8 3E-19 6.4E-24 149.3 16.5 155 94-268 2-229 (233)
107 cd01863 Rab18 Rab18 subfamily. 99.8 2.8E-19 6.1E-24 140.8 15.4 151 94-263 2-160 (161)
108 cd00154 Rab Rab family. Rab G 99.8 3.2E-19 7E-24 139.2 15.6 150 93-261 1-158 (159)
109 cd04101 RabL4 RabL4 (Rab-like4 99.8 4.2E-19 9.1E-24 140.3 16.4 151 94-264 2-163 (164)
110 TIGR00437 feoB ferrous iron tr 99.8 1.7E-19 3.6E-24 168.8 16.0 151 99-264 1-154 (591)
111 cd00879 Sar1 Sar1 subfamily. 99.8 1.5E-19 3.2E-24 146.5 13.7 157 92-263 19-189 (190)
112 smart00175 RAB Rab subfamily o 99.8 9.1E-19 2E-23 138.1 17.6 151 94-265 2-162 (164)
113 cd00877 Ran Ran (Ras-related n 99.8 3.1E-19 6.8E-24 141.7 14.9 152 94-265 2-159 (166)
114 cd01860 Rab5_related Rab5-rela 99.8 5.2E-19 1.1E-23 139.5 16.0 153 93-264 2-162 (163)
115 cd04144 Ras2 Ras2 subfamily. 99.8 3.1E-19 6.6E-24 144.9 15.0 151 94-265 1-163 (190)
116 CHL00071 tufA elongation facto 99.8 5.2E-19 1.1E-23 159.5 18.0 161 91-264 11-210 (409)
117 cd04127 Rab27A Rab27a subfamil 99.8 6.7E-19 1.4E-23 141.4 16.6 153 92-264 4-176 (180)
118 PTZ00369 Ras-like protein; Pro 99.8 2.5E-19 5.3E-24 145.3 14.1 153 92-265 5-167 (189)
119 PLN03118 Rab family protein; P 99.8 7.9E-19 1.7E-23 144.9 17.3 155 92-265 14-177 (211)
120 cd04122 Rab14 Rab14 subfamily. 99.8 4.3E-19 9.3E-24 140.7 15.1 151 93-264 3-163 (166)
121 cd04106 Rab23_lke Rab23-like s 99.8 7E-19 1.5E-23 138.6 16.1 149 94-263 2-161 (162)
122 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 8.5E-19 1.8E-23 143.6 17.2 153 93-265 1-168 (201)
123 cd04112 Rab26 Rab26 subfamily. 99.8 6.5E-19 1.4E-23 143.1 16.4 153 94-267 2-165 (191)
124 cd04109 Rab28 Rab28 subfamily. 99.8 8.7E-19 1.9E-23 145.0 17.3 150 94-265 2-166 (215)
125 cd04176 Rap2 Rap2 subgroup. T 99.8 3.1E-19 6.6E-24 141.0 13.9 150 93-264 2-162 (163)
126 TIGR03680 eif2g_arch translati 99.8 5.3E-19 1.1E-23 159.3 17.2 159 92-264 4-195 (406)
127 cd04142 RRP22 RRP22 subfamily. 99.8 6.3E-19 1.4E-23 143.9 16.1 160 94-264 2-173 (198)
128 cd04104 p47_IIGP_like p47 (47- 99.8 8.5E-19 1.8E-23 143.1 16.7 165 93-267 2-186 (197)
129 PRK12736 elongation factor Tu; 99.8 9.2E-19 2E-23 157.2 18.4 161 91-264 11-200 (394)
130 cd01883 EF1_alpha Eukaryotic e 99.8 3.1E-19 6.8E-24 148.0 14.1 148 94-254 1-194 (219)
131 cd04113 Rab4 Rab4 subfamily. 99.8 8.2E-19 1.8E-23 138.3 15.6 152 94-263 2-160 (161)
132 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.5E-18 3.2E-23 138.4 17.2 154 94-266 2-166 (170)
133 cd04110 Rab35 Rab35 subfamily. 99.8 1.8E-18 3.9E-23 141.4 18.0 156 91-266 5-168 (199)
134 cd01862 Rab7 Rab7 subfamily. 99.8 1.5E-18 3.2E-23 138.0 17.0 153 94-265 2-167 (172)
135 cd04161 Arl2l1_Arl13_like Arl2 99.8 5.8E-19 1.3E-23 140.3 14.4 154 94-262 1-166 (167)
136 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 9.2E-19 2E-23 142.8 15.8 166 94-266 2-185 (196)
137 TIGR00231 small_GTP small GTP- 99.8 5.7E-19 1.2E-23 137.4 13.9 154 93-261 2-160 (161)
138 cd04116 Rab9 Rab9 subfamily. 99.8 8.2E-19 1.8E-23 139.6 15.0 153 91-263 4-169 (170)
139 cd04114 Rab30 Rab30 subfamily. 99.8 1.1E-18 2.5E-23 138.4 15.7 152 92-264 7-168 (169)
140 PRK04000 translation initiatio 99.8 1.1E-18 2.4E-23 157.2 17.4 162 91-265 8-201 (411)
141 COG3596 Predicted GTPase [Gene 99.8 8.1E-19 1.8E-23 144.9 15.1 165 91-266 38-223 (296)
142 cd04159 Arl10_like Arl10-like 99.8 1.2E-18 2.6E-23 136.1 15.3 151 95-262 2-158 (159)
143 COG0536 Obg Predicted GTPase [ 99.8 4.1E-19 8.8E-24 150.6 13.4 161 94-267 161-335 (369)
144 PRK04004 translation initiatio 99.8 2.1E-18 4.6E-23 161.1 19.5 158 91-264 5-217 (586)
145 cd04118 Rab24 Rab24 subfamily. 99.8 7.6E-19 1.6E-23 142.8 14.6 153 94-264 2-165 (193)
146 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.7E-18 3.8E-23 138.3 16.2 152 93-265 3-164 (172)
147 PRK12735 elongation factor Tu; 99.8 1.9E-18 4.2E-23 155.2 18.3 161 91-264 11-202 (396)
148 cd04123 Rab21 Rab21 subfamily. 99.8 2.4E-18 5.2E-23 135.2 16.4 151 94-264 2-161 (162)
149 PLN03110 Rab GTPase; Provision 99.8 2.4E-18 5.2E-23 142.5 17.2 153 92-265 12-174 (216)
150 PTZ00327 eukaryotic translatio 99.8 1.3E-18 2.9E-23 157.6 16.8 161 91-265 33-233 (460)
151 cd04147 Ras_dva Ras-dva subfam 99.8 1.3E-18 2.9E-23 142.1 15.0 153 94-265 1-163 (198)
152 KOG2486 Predicted GTPase [Gene 99.8 1.6E-19 3.6E-24 148.7 9.3 180 84-263 128-314 (320)
153 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.6E-18 3.5E-23 138.9 14.7 153 93-263 2-173 (175)
154 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3.3E-18 7.3E-23 137.9 16.6 153 94-266 2-167 (182)
155 cd04132 Rho4_like Rho4-like su 99.8 1.6E-18 3.6E-23 140.0 14.8 155 94-266 2-168 (187)
156 PLN03071 GTP-binding nuclear p 99.8 2.1E-18 4.5E-23 143.1 15.8 155 91-265 12-172 (219)
157 cd00157 Rho Rho (Ras homology) 99.8 1.5E-18 3.2E-23 137.9 14.1 152 93-262 1-170 (171)
158 cd04120 Rab12 Rab12 subfamily. 99.8 2.8E-18 6.2E-23 140.3 16.0 152 94-265 2-163 (202)
159 cd04121 Rab40 Rab40 subfamily. 99.8 4.5E-18 9.8E-23 137.8 16.8 153 92-265 6-167 (189)
160 PLN03127 Elongation factor Tu; 99.8 4.2E-18 9.2E-23 154.5 18.4 161 91-264 60-251 (447)
161 PRK00049 elongation factor Tu; 99.8 4.6E-18 1E-22 152.7 18.2 161 91-264 11-202 (396)
162 cd04125 RabA_like RabA-like su 99.8 6.5E-18 1.4E-22 136.8 17.1 153 93-265 1-162 (188)
163 cd04126 Rab20 Rab20 subfamily. 99.8 3.2E-18 7E-23 141.6 15.4 156 94-265 2-190 (220)
164 cd04134 Rho3 Rho3 subfamily. 99.8 3.7E-18 8.1E-23 138.4 15.5 155 94-266 2-175 (189)
165 cd04177 RSR1 RSR1 subgroup. R 99.8 2E-18 4.3E-23 137.2 13.6 151 93-264 2-163 (168)
166 PRK05506 bifunctional sulfate 99.8 1.8E-18 3.8E-23 164.1 15.6 151 91-255 23-211 (632)
167 cd00876 Ras Ras family. The R 99.8 2.8E-18 6E-23 134.6 14.1 149 94-263 1-159 (160)
168 cd04117 Rab15 Rab15 subfamily. 99.8 8.6E-18 1.9E-22 132.7 16.9 149 94-263 2-160 (161)
169 cd01871 Rac1_like Rac1-like su 99.8 3.1E-18 6.8E-23 137.1 14.3 153 93-263 2-173 (174)
170 COG0532 InfB Translation initi 99.8 5.8E-18 1.2E-22 151.5 17.1 159 91-265 4-170 (509)
171 TIGR00485 EF-Tu translation el 99.8 7.1E-18 1.5E-22 151.6 18.0 158 92-262 12-198 (394)
172 cd04137 RheB Rheb (Ras Homolog 99.8 5.2E-18 1.1E-22 136.2 15.2 153 93-266 2-164 (180)
173 smart00174 RHO Rho (Ras homolo 99.8 3E-18 6.4E-23 136.8 13.3 152 95-264 1-171 (174)
174 cd01892 Miro2 Miro2 subfamily. 99.8 3.3E-18 7.2E-23 136.3 13.4 155 91-265 3-166 (169)
175 cd04143 Rhes_like Rhes_like su 99.8 5.5E-18 1.2E-22 142.8 15.4 151 94-264 2-170 (247)
176 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.4E-17 3E-22 132.6 16.9 153 93-265 3-169 (170)
177 TIGR02034 CysN sulfate adenyly 99.8 4.6E-18 1E-22 153.1 15.7 149 94-255 2-187 (406)
178 cd04111 Rab39 Rab39 subfamily. 99.8 6.7E-18 1.4E-22 139.3 15.1 152 93-265 3-166 (211)
179 TIGR00483 EF-1_alpha translati 99.8 9.8E-18 2.1E-22 152.2 17.2 152 91-255 6-197 (426)
180 cd04146 RERG_RasL11_like RERG/ 99.8 4.8E-18 1E-22 134.5 13.3 152 94-265 1-164 (165)
181 cd04133 Rop_like Rop subfamily 99.8 4.8E-18 1E-22 136.1 13.3 153 93-264 2-172 (176)
182 cd01870 RhoA_like RhoA-like su 99.8 1.1E-17 2.5E-22 133.5 15.5 154 93-264 2-174 (175)
183 TIGR01393 lepA GTP-binding pro 99.8 8.9E-18 1.9E-22 157.3 17.1 157 92-265 3-180 (595)
184 cd04135 Tc10 TC10 subfamily. 99.8 1.1E-17 2.4E-22 133.5 15.2 153 94-264 2-173 (174)
185 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 5.6E-18 1.2E-22 134.3 13.3 153 95-262 2-163 (164)
186 cd04130 Wrch_1 Wrch-1 subfamil 99.8 5.7E-18 1.2E-22 135.3 13.4 151 94-262 2-171 (173)
187 PRK05124 cysN sulfate adenylyl 99.8 6.2E-18 1.3E-22 154.7 14.8 153 91-256 26-216 (474)
188 PLN03108 Rab family protein; P 99.8 3.9E-17 8.5E-22 134.7 18.2 154 92-264 6-167 (210)
189 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.6E-17 3.4E-22 133.9 15.5 153 92-263 5-178 (182)
190 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2E-17 4.4E-22 137.7 16.6 154 92-264 13-187 (232)
191 cd04148 RGK RGK subfamily. Th 99.8 1.2E-17 2.5E-22 138.8 15.1 151 94-265 2-163 (221)
192 cd01875 RhoG RhoG subfamily. 99.8 1.4E-17 3.1E-22 135.2 15.3 154 93-264 4-176 (191)
193 PLN03126 Elongation factor Tu; 99.8 2.7E-17 5.9E-22 150.1 18.7 149 90-251 79-248 (478)
194 KOG1145 Mitochondrial translat 99.8 2.1E-17 4.5E-22 147.2 17.3 159 90-264 151-315 (683)
195 KOG0092 GTPase Rab5/YPT51 and 99.8 3.3E-18 7.2E-23 133.7 10.5 156 92-266 5-168 (200)
196 cd04131 Rnd Rnd subfamily. Th 99.8 2E-17 4.4E-22 132.8 15.1 152 93-263 2-174 (178)
197 TIGR01394 TypA_BipA GTP-bindin 99.8 3.4E-17 7.3E-22 153.1 17.4 159 93-265 2-191 (594)
198 smart00176 RAN Ran (Ras-relate 99.8 3E-17 6.6E-22 134.0 14.8 145 98-265 1-154 (200)
199 PRK05433 GTP-binding protein L 99.8 4.3E-17 9.3E-22 152.8 17.7 158 91-265 6-184 (600)
200 PRK10218 GTP-binding protein; 99.8 5.6E-17 1.2E-21 151.5 18.0 159 92-265 5-195 (607)
201 cd04168 TetM_like Tet(M)-like 99.7 3.5E-17 7.6E-22 137.1 14.6 158 94-265 1-235 (237)
202 PF00025 Arf: ADP-ribosylation 99.7 6.5E-18 1.4E-22 135.4 9.1 156 91-263 13-174 (175)
203 PTZ00141 elongation factor 1- 99.7 8.5E-17 1.8E-21 146.2 16.5 152 91-255 6-203 (446)
204 cd04103 Centaurin_gamma Centau 99.7 5.6E-17 1.2E-21 127.8 13.3 144 94-263 2-157 (158)
205 KOG0073 GTP-binding ADP-ribosy 99.7 1.6E-16 3.6E-21 120.9 15.1 155 93-265 17-178 (185)
206 cd01886 EF-G Elongation factor 99.7 4.5E-17 9.7E-22 138.8 13.4 141 94-250 1-160 (270)
207 cd01899 Ygr210 Ygr210 subfamil 99.7 6.1E-17 1.3E-21 140.6 14.3 83 95-185 1-110 (318)
208 cd00882 Ras_like_GTPase Ras-li 99.7 6.5E-17 1.4E-21 124.4 12.7 146 97-261 1-156 (157)
209 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 2.5E-16 5.4E-21 123.4 15.4 153 93-266 23-186 (221)
210 KOG0084 GTPase Rab1/YPT1, smal 99.7 1.4E-16 3E-21 125.1 13.8 153 92-266 9-173 (205)
211 cd01885 EF2 EF2 (for archaea a 99.7 1.5E-16 3.3E-21 131.6 14.1 109 94-216 2-138 (222)
212 KOG1490 GTP-binding protein CR 99.7 8.1E-17 1.8E-21 142.2 13.1 180 80-267 154-343 (620)
213 cd01882 BMS1 Bms1. Bms1 is an 99.7 5.7E-16 1.2E-20 128.9 17.6 143 90-250 37-181 (225)
214 cd01853 Toc34_like Toc34-like 99.7 1E-15 2.2E-20 128.8 19.1 128 91-220 30-166 (249)
215 KOG0394 Ras-related GTPase [Ge 99.7 1.4E-16 3E-21 123.7 12.2 157 89-264 6-177 (210)
216 cd01873 RhoBTB RhoBTB subfamil 99.7 2.6E-16 5.6E-21 128.2 14.4 153 93-263 3-194 (195)
217 cd04129 Rho2 Rho2 subfamily. 99.7 2.1E-16 4.5E-21 127.9 13.4 154 94-265 3-173 (187)
218 PRK00007 elongation factor G; 99.7 3E-16 6.5E-21 150.1 16.5 115 91-218 9-142 (693)
219 cd04167 Snu114p Snu114p subfam 99.7 2.7E-16 5.8E-21 129.9 14.1 157 94-264 2-210 (213)
220 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 3.8E-16 8.2E-21 129.4 15.0 153 93-264 2-175 (222)
221 PRK12739 elongation factor G; 99.7 3.2E-16 6.8E-21 150.0 16.5 115 91-218 7-140 (691)
222 PRK09602 translation-associate 99.7 3.3E-16 7E-21 139.9 15.1 85 93-185 2-113 (396)
223 KOG0462 Elongation factor-type 99.7 2.2E-16 4.7E-21 140.8 12.9 164 86-266 54-236 (650)
224 cd01850 CDC_Septin CDC/Septin. 99.7 1.6E-15 3.5E-20 129.7 17.5 150 93-247 5-184 (276)
225 TIGR00484 EF-G translation elo 99.7 4.8E-16 1E-20 148.8 15.8 115 91-218 9-142 (689)
226 cd04105 SR_beta Signal recogni 99.7 8.4E-16 1.8E-20 126.0 15.1 154 93-262 1-202 (203)
227 KOG0078 GTP-binding protein SE 99.7 1.4E-15 3.1E-20 121.0 15.6 154 90-265 10-174 (207)
228 cd04170 EF-G_bact Elongation f 99.7 5.8E-16 1.3E-20 132.4 11.9 146 94-259 1-167 (268)
229 COG5257 GCD11 Translation init 99.7 6.4E-16 1.4E-20 129.9 11.7 161 91-265 9-202 (415)
230 cd04169 RF3 RF3 subfamily. Pe 99.7 3E-15 6.6E-20 127.5 15.9 126 93-232 3-151 (267)
231 PTZ00258 GTP-binding protein; 99.7 1.5E-15 3.3E-20 134.4 14.3 88 90-185 19-126 (390)
232 PTZ00132 GTP-binding nuclear p 99.7 5.9E-15 1.3E-19 122.1 16.8 155 91-265 8-168 (215)
233 PF00071 Ras: Ras family; Int 99.7 2.5E-15 5.3E-20 118.4 13.4 151 94-265 1-161 (162)
234 PRK00741 prfC peptide chain re 99.7 4.8E-15 1E-19 137.0 17.2 114 92-218 10-146 (526)
235 PLN00043 elongation factor 1-a 99.6 5.6E-15 1.2E-19 134.3 16.5 152 91-255 6-203 (447)
236 TIGR00503 prfC peptide chain r 99.6 7.5E-15 1.6E-19 135.7 16.6 113 92-217 11-146 (527)
237 PF05049 IIGP: Interferon-indu 99.6 2.1E-15 4.6E-20 132.1 11.9 163 92-267 35-220 (376)
238 COG3276 SelB Selenocysteine-sp 99.6 9.4E-15 2E-19 128.0 15.2 155 94-264 2-161 (447)
239 PF04548 AIG1: AIG1 family; I 99.6 1.3E-14 2.7E-19 119.8 15.4 167 94-267 2-188 (212)
240 PRK13351 elongation factor G; 99.6 6.1E-15 1.3E-19 141.4 15.4 115 91-218 7-140 (687)
241 KOG0098 GTPase Rab2, small G p 99.6 7.5E-15 1.6E-19 114.3 12.9 149 92-262 6-165 (216)
242 COG2229 Predicted GTPase [Gene 99.6 3.2E-14 6.9E-19 111.0 16.4 153 92-263 10-176 (187)
243 PRK09435 membrane ATPase/prote 99.6 2.3E-14 5E-19 124.7 17.0 110 137-266 148-261 (332)
244 KOG0087 GTPase Rab11/YPT3, sma 99.6 3.9E-15 8.5E-20 118.2 10.4 152 92-263 14-174 (222)
245 KOG0075 GTP-binding ADP-ribosy 99.6 5.8E-15 1.3E-19 110.5 9.7 154 93-265 21-182 (186)
246 PRK13768 GTPase; Provisional 99.6 1.5E-14 3.2E-19 122.4 13.4 122 138-265 97-247 (253)
247 COG5256 TEF1 Translation elong 99.6 4.4E-14 9.6E-19 123.0 15.8 153 91-256 6-202 (428)
248 KOG0095 GTPase Rab30, small G 99.6 4.6E-14 9.9E-19 106.0 13.5 151 92-262 7-166 (213)
249 KOG0070 GTP-binding ADP-ribosy 99.6 6.3E-15 1.4E-19 115.0 9.2 160 90-266 15-179 (181)
250 COG4917 EutP Ethanolamine util 99.6 1.5E-14 3.2E-19 105.6 10.3 143 93-263 2-144 (148)
251 COG1100 GTPase SAR1 and relate 99.6 9.9E-14 2.1E-18 114.8 16.4 157 93-265 6-185 (219)
252 KOG1532 GTPase XAB1, interacts 99.6 4.4E-14 9.5E-19 116.6 13.8 122 139-265 117-264 (366)
253 PRK14845 translation initiatio 99.6 5.3E-14 1.2E-18 137.4 16.6 147 103-264 472-672 (1049)
254 KOG1144 Translation initiation 99.6 3.8E-14 8.3E-19 130.1 14.4 160 91-265 474-687 (1064)
255 PRK09601 GTP-binding protein Y 99.6 3.1E-14 6.7E-19 124.8 13.3 85 93-185 3-107 (364)
256 KOG0461 Selenocysteine-specifi 99.6 2.3E-13 4.9E-18 115.7 16.7 159 93-264 8-192 (522)
257 KOG1486 GTP-binding protein DR 99.6 2.9E-14 6.3E-19 116.2 10.5 157 91-267 61-290 (364)
258 TIGR00991 3a0901s02IAP34 GTP-b 99.6 1.3E-13 2.8E-18 118.0 14.8 123 91-218 37-168 (313)
259 KOG0079 GTP-binding protein H- 99.6 5E-14 1.1E-18 105.6 10.7 154 93-267 9-171 (198)
260 PRK12740 elongation factor G; 99.6 7.2E-14 1.6E-18 133.8 14.6 108 98-218 1-127 (668)
261 cd04102 RabL3 RabL3 (Rab-like3 99.5 2E-13 4.3E-18 111.6 15.0 140 94-250 2-175 (202)
262 TIGR02836 spore_IV_A stage IV 99.5 1.9E-13 4.1E-18 119.8 15.4 164 90-263 15-232 (492)
263 COG0481 LepA Membrane GTPase L 99.5 2.4E-14 5.1E-19 126.1 9.6 158 91-265 8-186 (603)
264 PTZ00416 elongation factor 2; 99.5 1.6E-13 3.4E-18 133.6 16.2 111 92-216 19-157 (836)
265 smart00053 DYNc Dynamin, GTPas 99.5 5.7E-13 1.2E-17 111.1 17.0 80 138-219 125-208 (240)
266 KOG0080 GTPase Rab18, small G 99.5 1.3E-13 2.9E-18 104.8 11.9 151 92-264 11-173 (209)
267 PLN00116 translation elongatio 99.5 1.7E-13 3.6E-18 133.6 15.2 112 91-216 18-163 (843)
268 KOG0076 GTP-binding ADP-ribosy 99.5 1.4E-13 3E-18 106.0 11.1 160 93-267 18-189 (197)
269 COG2895 CysN GTPases - Sulfate 99.5 3.4E-13 7.4E-18 115.0 13.8 152 91-255 5-193 (431)
270 PF00735 Septin: Septin; Inte 99.5 2.3E-13 5E-18 116.5 12.9 141 93-235 5-174 (281)
271 COG0012 Predicted GTPase, prob 99.5 2.2E-13 4.8E-18 117.9 12.6 86 92-185 2-108 (372)
272 KOG0395 Ras-related GTPase [Ge 99.5 3.2E-13 7E-18 109.7 12.7 152 93-266 4-166 (196)
273 KOG0090 Signal recognition par 99.5 5.1E-13 1.1E-17 106.5 13.4 158 92-264 38-238 (238)
274 PF00350 Dynamin_N: Dynamin fa 99.5 1.1E-13 2.5E-18 109.7 9.5 109 95-213 1-168 (168)
275 PF09439 SRPRB: Signal recogni 99.5 8.3E-14 1.8E-18 110.8 8.6 124 92-229 3-138 (181)
276 PRK07560 elongation factor EF- 99.5 3.7E-13 7.9E-18 129.7 13.6 111 92-216 20-152 (731)
277 KOG0093 GTPase Rab3, small G p 99.5 7.2E-13 1.6E-17 99.3 12.0 152 92-265 21-183 (193)
278 PF03308 ArgK: ArgK protein; 99.5 3.8E-14 8.1E-19 117.3 5.7 150 92-266 29-231 (266)
279 TIGR00073 hypB hydrogenase acc 99.5 4.2E-13 9.1E-18 110.4 11.6 59 201-264 146-206 (207)
280 TIGR00750 lao LAO/AO transport 99.5 2.2E-12 4.7E-17 111.9 16.5 109 137-265 126-238 (300)
281 KOG0086 GTPase Rab4, small G p 99.5 2.2E-12 4.8E-17 97.3 14.0 150 92-261 9-167 (214)
282 COG1703 ArgK Putative periplas 99.5 2E-12 4.3E-17 108.6 14.9 156 92-267 51-256 (323)
283 COG1217 TypA Predicted membran 99.5 2.1E-12 4.5E-17 113.8 14.4 160 92-265 5-195 (603)
284 KOG0091 GTPase Rab39, small G 99.4 1.6E-12 3.5E-17 99.1 11.8 152 93-264 9-172 (213)
285 PF08477 Miro: Miro-like prote 99.4 3.4E-13 7.4E-18 100.7 7.7 107 94-214 1-119 (119)
286 PLN00023 GTP-binding protein; 99.4 1.7E-12 3.8E-17 111.8 12.9 119 87-218 16-166 (334)
287 KOG0071 GTP-binding ADP-ribosy 99.4 1.6E-12 3.4E-17 96.8 10.8 155 93-265 18-178 (180)
288 cd01900 YchF YchF subfamily. 99.4 3.3E-13 7.1E-18 114.7 8.0 83 95-185 1-103 (274)
289 COG5019 CDC3 Septin family pro 99.4 6.4E-12 1.4E-16 108.2 15.6 147 92-243 23-199 (373)
290 KOG0074 GTP-binding ADP-ribosy 99.4 5E-13 1.1E-17 99.5 7.0 158 92-265 17-179 (185)
291 PRK10463 hydrogenase nickel in 99.4 8E-13 1.7E-17 112.4 9.2 165 85-263 97-287 (290)
292 KOG0072 GTP-binding ADP-ribosy 99.4 1.2E-12 2.7E-17 97.7 8.3 158 93-267 19-181 (182)
293 TIGR00993 3a0901s04IAP86 chlor 99.4 1.5E-11 3.1E-16 113.8 16.7 125 92-218 118-251 (763)
294 PF03029 ATP_bind_1: Conserved 99.4 1.2E-11 2.6E-16 103.5 14.8 119 139-265 92-237 (238)
295 cd04178 Nucleostemin_like Nucl 99.4 7.4E-13 1.6E-17 105.5 7.2 57 91-148 116-172 (172)
296 cd01858 NGP_1 NGP-1. Autoanti 99.4 8E-13 1.7E-17 103.9 7.3 56 92-148 102-157 (157)
297 KOG0458 Elongation factor 1 al 99.4 1.8E-11 4E-16 110.5 14.4 153 91-256 176-373 (603)
298 KOG2655 Septin family protein 99.3 4.5E-11 9.6E-16 103.8 15.9 142 92-235 21-190 (366)
299 TIGR00490 aEF-2 translation el 99.3 3.3E-12 7.1E-17 122.9 9.5 113 92-217 19-152 (720)
300 KOG0088 GTPase Rab21, small G 99.3 2.2E-12 4.7E-17 97.9 6.4 154 92-264 13-174 (218)
301 TIGR03597 GTPase_YqeH ribosome 99.3 1.6E-12 3.5E-17 115.4 6.0 135 93-230 155-293 (360)
302 KOG1547 Septin CDC10 and relat 99.3 5.7E-11 1.2E-15 96.6 13.9 141 93-235 47-216 (336)
303 KOG0097 GTPase Rab14, small G 99.3 6.7E-11 1.5E-15 88.2 12.4 144 92-258 11-166 (215)
304 TIGR00101 ureG urease accessor 99.3 3.1E-11 6.8E-16 98.5 11.4 81 175-264 113-195 (199)
305 KOG0083 GTPase Rab26/Rab37, sm 99.3 4.3E-12 9.2E-17 93.7 5.4 150 97-268 2-163 (192)
306 KOG1487 GTP-binding protein DR 99.3 4.3E-12 9.3E-17 104.1 5.9 154 93-266 60-282 (358)
307 COG1161 Predicted GTPases [Gen 99.3 6E-12 1.3E-16 109.9 6.7 59 92-151 132-190 (322)
308 PTZ00099 rab6; Provisional 99.3 4.3E-11 9.4E-16 95.9 11.0 112 137-266 28-143 (176)
309 KOG4252 GTP-binding protein [S 99.3 5.1E-12 1.1E-16 97.9 5.0 151 93-265 21-181 (246)
310 KOG0081 GTPase Rab27, small G 99.3 2.8E-11 6E-16 92.0 8.8 152 93-263 10-179 (219)
311 COG0050 TufB GTPases - transla 99.3 1.8E-10 4E-15 96.3 14.2 145 92-249 12-177 (394)
312 KOG0466 Translation initiation 99.3 1.8E-11 3.9E-16 102.7 8.2 162 90-264 36-240 (466)
313 KOG1954 Endocytosis/signaling 99.3 8.4E-11 1.8E-15 101.1 12.2 136 90-229 56-237 (532)
314 COG4108 PrfC Peptide chain rel 99.3 3.3E-11 7.2E-16 105.6 9.6 125 94-232 14-161 (528)
315 KOG1143 Predicted translation 99.2 1.4E-10 3E-15 99.8 12.9 234 12-261 66-384 (591)
316 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 2E-10 4.4E-15 95.3 13.5 161 94-264 1-175 (232)
317 COG5258 GTPBP1 GTPase [General 99.2 9.8E-11 2.1E-15 101.1 11.9 160 90-262 115-336 (527)
318 PRK09563 rbgA GTPase YlqF; Rev 99.2 2.2E-11 4.7E-16 105.1 8.1 61 91-152 120-180 (287)
319 COG0480 FusA Translation elong 99.2 9.8E-11 2.1E-15 110.8 13.0 130 90-233 8-157 (697)
320 cd01849 YlqF_related_GTPase Yl 99.2 2.7E-11 5.8E-16 95.0 7.1 57 91-148 99-155 (155)
321 cd01859 MJ1464 MJ1464. This f 99.2 2E-10 4.3E-15 90.1 11.6 95 161-265 2-96 (156)
322 cd01857 HSR1_MMR1 HSR1/MMR1. 99.2 3.4E-11 7.3E-16 93.0 7.0 55 94-149 85-139 (141)
323 cd01855 YqeH YqeH. YqeH is an 99.2 2.7E-11 5.9E-16 98.2 6.5 56 93-148 128-190 (190)
324 KOG1491 Predicted GTP-binding 99.2 2.6E-10 5.7E-15 97.1 12.3 88 91-186 19-126 (391)
325 TIGR03596 GTPase_YlqF ribosome 99.2 4E-11 8.6E-16 102.9 7.3 60 91-151 117-176 (276)
326 COG0378 HypB Ni2+-binding GTPa 99.2 4.3E-11 9.4E-16 94.8 5.6 162 92-264 13-200 (202)
327 KOG1424 Predicted GTP-binding 99.1 7.5E-11 1.6E-15 105.2 5.5 59 92-151 314-372 (562)
328 KOG0448 Mitofusin 1 GTPase, in 99.1 6.6E-10 1.4E-14 102.2 11.2 143 93-249 110-310 (749)
329 cd01856 YlqF YlqF. Proteins o 99.1 2.8E-10 6.1E-15 90.7 7.6 57 91-148 114-170 (171)
330 KOG1707 Predicted Ras related/ 99.1 3E-10 6.5E-15 102.8 8.4 152 92-263 9-173 (625)
331 cd01858 NGP_1 NGP-1. Autoanti 99.1 6.6E-10 1.4E-14 87.3 8.7 87 172-264 6-94 (157)
332 PRK13796 GTPase YqeH; Provisio 99.1 1.8E-10 3.9E-15 102.5 6.2 58 93-150 161-222 (365)
333 KOG0468 U5 snRNP-specific prot 99.1 1.2E-09 2.5E-14 100.2 11.1 112 92-216 128-262 (971)
334 KOG2485 Conserved ATP/GTP bind 99.1 3.2E-09 6.8E-14 89.8 12.4 134 18-152 59-210 (335)
335 KOG3883 Ras family small GTPas 99.1 8E-09 1.7E-13 78.3 13.3 154 92-264 9-174 (198)
336 KOG0393 Ras-related small GTPa 99.1 6.2E-10 1.4E-14 89.2 7.8 151 93-264 5-178 (198)
337 KOG0077 Vesicle coat complex C 99.0 1.4E-09 3E-14 83.5 9.1 154 93-263 21-191 (193)
338 PRK12289 GTPase RsgA; Reviewed 99.0 5.2E-10 1.1E-14 98.6 7.7 57 94-151 174-237 (352)
339 cd01859 MJ1464 MJ1464. This f 99.0 8.1E-10 1.8E-14 86.6 7.6 56 92-148 101-156 (156)
340 PRK12288 GTPase RsgA; Reviewed 99.0 6.6E-10 1.4E-14 97.9 7.5 71 94-165 207-288 (347)
341 cd01849 YlqF_related_GTPase Yl 99.0 3.9E-09 8.4E-14 82.7 9.8 82 176-263 1-83 (155)
342 KOG0467 Translation elongation 99.0 4.5E-09 9.9E-14 97.7 11.5 112 90-215 7-136 (887)
343 cd01855 YqeH YqeH. YqeH is an 99.0 7.6E-09 1.6E-13 83.8 11.0 91 172-264 32-124 (190)
344 TIGR00157 ribosome small subun 99.0 1.6E-09 3.6E-14 91.2 7.0 70 93-164 121-201 (245)
345 TIGR00092 GTP-binding protein 98.9 1.4E-09 3E-14 95.7 6.6 86 93-185 3-108 (368)
346 PF03193 DUF258: Protein of un 98.9 6.2E-10 1.4E-14 86.9 3.9 58 93-151 36-100 (161)
347 cd01856 YlqF YlqF. Proteins o 98.9 9.1E-09 2E-13 82.0 10.7 90 166-264 11-100 (171)
348 KOG0460 Mitochondrial translat 98.9 3E-08 6.4E-13 84.8 13.3 144 92-248 54-218 (449)
349 TIGR03596 GTPase_YlqF ribosome 98.9 2.8E-08 6.2E-13 85.3 11.9 90 167-265 14-103 (276)
350 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 1.6E-08 3.4E-13 78.0 9.1 76 170-252 7-84 (141)
351 PRK00098 GTPase RsgA; Reviewed 98.9 8.8E-09 1.9E-13 89.3 8.4 57 93-150 165-228 (298)
352 KOG0463 GTP-binding protein GP 98.9 1.4E-08 2.9E-13 87.9 9.2 111 140-261 221-354 (641)
353 cd01851 GBP Guanylate-binding 98.8 2.2E-08 4.7E-13 83.3 9.8 90 90-185 5-102 (224)
354 KOG2484 GTPase [General functi 98.8 2.6E-09 5.6E-14 92.9 3.7 60 91-151 251-310 (435)
355 TIGR03348 VI_IcmF type VI secr 98.8 4.2E-08 9.2E-13 99.2 12.6 128 89-218 108-258 (1169)
356 KOG0447 Dynamin-like GTP bindi 98.8 5.2E-08 1.1E-12 87.9 11.4 125 90-218 306-494 (980)
357 COG5192 BMS1 GTP-binding prote 98.8 8.4E-08 1.8E-12 86.9 12.3 140 92-249 69-210 (1077)
358 PRK09563 rbgA GTPase YlqF; Rev 98.8 6.9E-08 1.5E-12 83.3 11.5 89 168-265 18-106 (287)
359 TIGR01425 SRP54_euk signal rec 98.8 4.8E-07 1E-11 81.5 16.6 117 92-218 100-254 (429)
360 COG1162 Predicted GTPases [Gen 98.8 2E-08 4.4E-13 85.4 6.9 71 94-165 166-247 (301)
361 KOG3859 Septins (P-loop GTPase 98.7 3.5E-08 7.5E-13 82.2 7.9 141 92-233 42-206 (406)
362 KOG3886 GTP-binding protein [S 98.7 7.2E-08 1.6E-12 78.3 9.4 143 93-249 5-163 (295)
363 PRK12289 GTPase RsgA; Reviewed 98.7 7E-08 1.5E-12 85.2 9.9 84 173-263 88-173 (352)
364 cd01854 YjeQ_engC YjeQ/EngC. 98.7 4.3E-08 9.3E-13 84.6 8.1 57 93-150 162-225 (287)
365 KOG2423 Nucleolar GTPase [Gene 98.7 8.8E-09 1.9E-13 89.5 2.5 61 90-151 305-365 (572)
366 TIGR00157 ribosome small subun 98.7 1.6E-07 3.4E-12 79.2 10.1 83 174-262 36-120 (245)
367 COG0523 Putative GTPases (G3E 98.7 4.9E-07 1.1E-11 78.8 13.3 152 92-257 1-193 (323)
368 cd03112 CobW_like The function 98.7 7.4E-08 1.6E-12 75.7 7.4 115 93-215 1-158 (158)
369 PRK10416 signal recognition pa 98.6 2E-06 4.4E-11 75.1 16.0 152 91-257 113-302 (318)
370 PRK00098 GTPase RsgA; Reviewed 98.6 2.1E-07 4.5E-12 80.8 9.2 84 173-262 79-164 (298)
371 TIGR00064 ftsY signal recognit 98.6 5.4E-06 1.2E-10 70.9 17.4 106 137-257 154-260 (272)
372 TIGR03597 GTPase_YqeH ribosome 98.6 6E-07 1.3E-11 79.9 11.9 88 174-263 63-151 (360)
373 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 7.1E-08 1.5E-12 75.8 4.6 153 92-264 10-168 (216)
374 cd01854 YjeQ_engC YjeQ/EngC. 98.6 3.2E-07 6.9E-12 79.2 8.8 83 173-262 77-161 (287)
375 PRK14974 cell division protein 98.5 1.7E-06 3.6E-11 76.0 12.7 146 92-257 140-322 (336)
376 PRK12288 GTPase RsgA; Reviewed 98.5 1E-06 2.2E-11 77.8 11.3 87 173-263 119-206 (347)
377 COG3523 IcmF Type VI protein s 98.5 7E-07 1.5E-11 88.6 11.2 126 90-218 123-271 (1188)
378 PF02492 cobW: CobW/HypB/UreG, 98.5 1.3E-07 2.8E-12 75.9 4.7 116 93-219 1-157 (178)
379 PRK01889 GTPase RsgA; Reviewed 98.5 1.1E-06 2.3E-11 78.2 10.5 82 173-261 111-193 (356)
380 KOG1673 Ras GTPases [General f 98.5 1.9E-06 4.1E-11 65.7 9.9 156 92-264 20-185 (205)
381 KOG3905 Dynein light intermedi 98.4 1.9E-05 4E-10 67.6 15.9 60 202-264 221-289 (473)
382 PRK13796 GTPase YqeH; Provisio 98.4 3.9E-06 8.5E-11 74.8 11.8 93 170-264 64-158 (365)
383 TIGR02475 CobW cobalamin biosy 98.4 3E-06 6.4E-11 74.8 10.2 134 91-230 3-200 (341)
384 PRK11537 putative GTP-binding 98.3 1E-05 2.2E-10 70.7 12.8 120 91-218 3-165 (318)
385 PF05783 DLIC: Dynein light in 98.3 4.2E-05 9E-10 70.1 16.7 61 203-266 196-265 (472)
386 KOG4423 GTP-binding protein-li 98.3 1E-07 2.2E-12 74.8 -0.5 154 92-264 25-193 (229)
387 KOG1534 Putative transcription 98.3 7.6E-06 1.7E-10 65.8 9.9 123 138-267 98-253 (273)
388 cd04178 Nucleostemin_like Nucl 98.3 5.6E-06 1.2E-10 65.9 9.2 55 176-230 1-57 (172)
389 cd00066 G-alpha G protein alph 98.3 9.9E-06 2.1E-10 70.9 11.2 117 137-266 160-312 (317)
390 KOG0464 Elongation factor G [T 98.3 2.9E-07 6.4E-12 80.7 1.1 127 92-232 37-182 (753)
391 PRK00771 signal recognition pa 98.2 2.2E-05 4.7E-10 71.4 13.2 96 138-256 176-274 (437)
392 KOG0465 Mitochondrial elongati 98.2 1.8E-06 3.9E-11 79.1 5.8 118 90-220 37-173 (721)
393 cd03114 ArgK-like The function 98.2 5.6E-06 1.2E-10 64.3 7.7 20 95-114 2-21 (148)
394 PF00448 SRP54: SRP54-type pro 98.2 2.7E-05 5.8E-10 63.4 11.5 71 138-218 84-155 (196)
395 KOG2743 Cobalamin synthesis pr 98.2 3.8E-05 8.2E-10 65.1 12.2 138 88-230 53-238 (391)
396 PRK14722 flhF flagellar biosyn 98.1 5.2E-06 1.1E-10 73.7 6.7 24 92-115 137-160 (374)
397 PRK10867 signal recognition pa 98.1 0.00012 2.7E-09 66.4 14.1 99 137-256 183-282 (433)
398 COG3640 CooC CO dehydrogenase 98.0 2.1E-05 4.6E-10 64.5 7.7 45 172-216 153-198 (255)
399 PRK12727 flagellar biosynthesi 98.0 0.00012 2.6E-09 67.5 13.1 23 92-114 350-372 (559)
400 TIGR00959 ffh signal recogniti 98.0 0.00018 3.9E-09 65.3 13.5 100 137-256 182-281 (428)
401 PRK01889 GTPase RsgA; Reviewed 97.9 6.7E-06 1.4E-10 73.1 3.5 57 93-150 196-259 (356)
402 PRK11889 flhF flagellar biosyn 97.9 0.00013 2.8E-09 65.0 11.2 117 92-218 241-392 (436)
403 PRK14721 flhF flagellar biosyn 97.9 8.4E-05 1.8E-09 67.1 10.3 25 91-115 190-214 (420)
404 KOG0469 Elongation factor 2 [T 97.9 1.6E-05 3.5E-10 71.5 5.6 111 91-216 18-163 (842)
405 KOG1707 Predicted Ras related/ 97.9 3.8E-05 8.2E-10 70.3 8.0 152 90-264 423-582 (625)
406 PF09547 Spore_IV_A: Stage IV 97.9 0.00022 4.8E-09 63.5 12.1 64 193-264 170-233 (492)
407 KOG0082 G-protein alpha subuni 97.9 0.0005 1.1E-08 60.3 13.7 117 137-266 194-345 (354)
408 KOG2484 GTPase [General functi 97.9 8.9E-05 1.9E-09 65.1 8.9 69 163-231 135-205 (435)
409 KOG0780 Signal recognition par 97.9 0.00019 4.2E-09 62.9 10.9 118 90-217 99-254 (483)
410 KOG0459 Polypeptide release fa 97.9 3.1E-05 6.7E-10 68.0 6.0 158 88-258 75-279 (501)
411 COG1419 FlhF Flagellar GTP-bin 97.8 0.00015 3.3E-09 64.3 10.0 24 92-115 203-226 (407)
412 COG1618 Predicted nucleotide k 97.8 0.00033 7.1E-09 54.3 10.3 155 92-266 5-177 (179)
413 COG1162 Predicted GTPases [Gen 97.8 0.00017 3.7E-09 61.7 9.5 84 175-263 80-165 (301)
414 cd03115 SRP The signal recogni 97.8 0.00031 6.8E-09 55.8 10.5 72 137-218 82-154 (173)
415 PRK05703 flhF flagellar biosyn 97.8 0.00025 5.5E-09 64.5 11.0 23 92-114 221-243 (424)
416 PRK12726 flagellar biosynthesi 97.8 0.00031 6.7E-09 62.4 10.8 24 91-114 205-228 (407)
417 PRK06995 flhF flagellar biosyn 97.8 0.0012 2.7E-08 60.6 14.9 23 93-115 257-279 (484)
418 PRK12724 flagellar biosynthesi 97.7 0.00016 3.4E-09 65.0 8.9 22 93-114 224-245 (432)
419 PRK12723 flagellar biosynthesi 97.7 0.0006 1.3E-08 61.1 12.4 117 92-218 174-327 (388)
420 cd02038 FleN-like FleN is a me 97.7 0.0004 8.8E-09 53.2 9.8 116 96-234 4-126 (139)
421 PRK14723 flhF flagellar biosyn 97.7 0.00028 6.1E-09 67.9 9.7 23 93-115 186-208 (767)
422 smart00010 small_GTPase Small 97.6 4.8E-05 1.1E-09 56.4 3.2 22 94-115 2-23 (124)
423 PRK06731 flhF flagellar biosyn 97.5 0.0018 3.8E-08 55.3 11.5 117 91-218 74-226 (270)
424 COG0541 Ffh Signal recognition 97.5 0.0045 9.7E-08 55.5 14.0 72 138-219 183-255 (451)
425 cd00071 GMPK Guanosine monopho 97.5 0.0004 8.8E-09 53.1 6.6 21 95-115 2-22 (137)
426 PF00004 AAA: ATPase family as 97.4 0.0012 2.5E-08 49.5 8.7 21 95-115 1-21 (132)
427 KOG1533 Predicted GTPase [Gene 97.4 0.00025 5.4E-09 58.2 5.1 75 138-218 97-178 (290)
428 KOG2423 Nucleolar GTPase [Gene 97.3 0.0024 5.2E-08 56.4 10.1 85 172-264 211-299 (572)
429 PRK13695 putative NTPase; Prov 97.3 0.0012 2.6E-08 52.5 7.7 22 94-115 2-23 (174)
430 TIGR03263 guanyl_kin guanylate 97.3 0.001 2.2E-08 53.1 7.0 23 94-116 3-25 (180)
431 COG1116 TauB ABC-type nitrate/ 97.3 0.0002 4.4E-09 59.5 2.9 23 94-116 31-53 (248)
432 COG1161 Predicted GTPases [Gen 97.2 0.0019 4.1E-08 56.7 8.9 81 170-258 30-110 (322)
433 KOG0781 Signal recognition par 97.2 0.0044 9.6E-08 56.0 11.0 96 137-247 466-566 (587)
434 KOG3887 Predicted small GTPase 97.2 0.0011 2.5E-08 54.7 6.3 118 92-220 27-152 (347)
435 COG3840 ThiQ ABC-type thiamine 97.2 0.00032 7E-09 55.6 2.9 23 93-115 26-48 (231)
436 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0079 1.7E-07 50.8 11.6 21 95-115 2-22 (249)
437 PF13555 AAA_29: P-loop contai 97.1 0.00049 1.1E-08 44.8 3.1 20 94-113 25-44 (62)
438 KOG0446 Vacuolar sorting prote 97.1 0.00021 4.6E-09 68.1 2.1 26 90-115 27-52 (657)
439 COG1136 SalX ABC-type antimicr 97.1 0.00037 8E-09 57.5 2.9 23 94-116 33-55 (226)
440 PRK14737 gmk guanylate kinase; 97.1 0.00068 1.5E-08 54.7 4.3 38 92-130 4-41 (186)
441 PF06858 NOG1: Nucleolar GTP-b 97.1 0.0019 4.2E-08 41.0 5.3 40 175-214 14-58 (58)
442 PF00005 ABC_tran: ABC transpo 97.1 0.00049 1.1E-08 52.3 3.1 24 93-116 12-35 (137)
443 PF13207 AAA_17: AAA domain; P 97.0 0.00051 1.1E-08 51.0 2.9 22 94-115 1-22 (121)
444 PF08433 KTI12: Chromatin asso 97.0 0.0035 7.5E-08 53.6 8.0 147 93-261 2-170 (270)
445 smart00275 G_alpha G protein a 97.0 0.0083 1.8E-07 53.1 10.7 117 136-265 182-334 (342)
446 KOG1424 Predicted GTP-binding 97.0 0.0043 9.3E-08 56.5 8.6 70 173-249 173-244 (562)
447 COG0552 FtsY Signal recognitio 97.0 0.006 1.3E-07 52.9 9.2 152 91-258 138-328 (340)
448 PF03205 MobB: Molybdopterin g 97.0 0.00064 1.4E-08 52.2 2.9 23 93-115 1-23 (140)
449 PRK10751 molybdopterin-guanine 96.9 0.0008 1.7E-08 53.4 3.5 25 91-115 5-29 (173)
450 PRK14738 gmk guanylate kinase; 96.9 0.0011 2.4E-08 54.3 4.2 23 93-115 14-36 (206)
451 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.0069 1.5E-07 42.4 7.7 69 95-186 2-70 (99)
452 PF02263 GBP: Guanylate-bindin 96.9 0.0023 5.1E-08 54.4 6.1 60 91-150 20-86 (260)
453 cd02036 MinD Bacterial cell di 96.9 0.019 4.1E-07 45.4 11.0 64 139-217 64-128 (179)
454 cd00009 AAA The AAA+ (ATPases 96.9 0.0081 1.7E-07 45.2 8.5 24 92-115 19-42 (151)
455 cd03111 CpaE_like This protein 96.8 0.011 2.4E-07 43.0 8.6 97 98-212 6-106 (106)
456 KOG4181 Uncharacterized conser 96.8 0.015 3.2E-07 50.7 10.4 25 91-115 187-211 (491)
457 PRK04195 replication factor C 96.8 0.044 9.6E-07 50.9 14.3 24 92-115 39-62 (482)
458 PF05621 TniB: Bacterial TniB 96.8 0.014 3E-07 50.2 9.8 27 90-116 59-85 (302)
459 cd02019 NK Nucleoside/nucleoti 96.7 0.0013 2.8E-08 43.9 2.7 21 95-115 2-22 (69)
460 cd01130 VirB11-like_ATPase Typ 96.7 0.0012 2.6E-08 53.2 3.1 23 93-115 26-48 (186)
461 COG1126 GlnQ ABC-type polar am 96.7 0.0014 3E-08 53.4 3.1 23 93-115 29-51 (240)
462 TIGR00235 udk uridine kinase. 96.7 0.0013 2.9E-08 53.9 3.1 25 91-115 5-29 (207)
463 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0014 2.9E-08 53.9 3.1 23 93-115 28-50 (211)
464 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0016 3.4E-08 52.1 3.4 24 92-115 25-48 (177)
465 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0015 3.3E-08 52.3 3.3 24 92-115 3-26 (188)
466 PF07015 VirC1: VirC1 protein; 96.7 0.035 7.5E-07 46.0 11.2 99 137-258 83-187 (231)
467 cd03261 ABC_Org_Solvent_Resist 96.7 0.0014 3E-08 54.8 3.1 24 93-116 27-50 (235)
468 TIGR01166 cbiO cobalt transpor 96.7 0.0015 3.2E-08 52.7 3.1 24 93-116 19-42 (190)
469 COG3839 MalK ABC-type sugar tr 96.7 0.0013 2.8E-08 57.6 2.9 23 94-116 31-53 (338)
470 PRK07261 topology modulation p 96.7 0.0015 3.2E-08 51.9 3.0 22 94-115 2-23 (171)
471 TIGR00960 3a0501s02 Type II (G 96.7 0.0018 3.8E-08 53.4 3.6 25 92-116 29-53 (216)
472 cd03264 ABC_drug_resistance_li 96.7 0.0016 3.4E-08 53.5 3.2 22 94-115 27-48 (211)
473 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0015 3.3E-08 53.8 3.1 25 92-116 30-54 (218)
474 cd03265 ABC_DrrA DrrA is the A 96.6 0.0016 3.4E-08 53.9 3.2 23 93-115 27-49 (220)
475 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0016 3.5E-08 53.2 3.1 24 92-115 26-49 (205)
476 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.0017 3.7E-08 50.0 3.1 24 93-116 27-50 (144)
477 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0017 3.6E-08 47.3 2.7 20 94-113 17-36 (107)
478 PF13671 AAA_33: AAA domain; P 96.6 0.0018 3.9E-08 49.4 3.1 22 94-115 1-22 (143)
479 cd03238 ABC_UvrA The excision 96.6 0.0021 4.5E-08 51.4 3.5 23 92-114 21-43 (176)
480 TIGR02673 FtsE cell division A 96.6 0.0017 3.7E-08 53.4 3.1 23 93-115 29-51 (214)
481 PRK10078 ribose 1,5-bisphospho 96.6 0.0018 3.8E-08 52.2 3.1 22 94-115 4-25 (186)
482 TIGR03608 L_ocin_972_ABC putat 96.6 0.0018 3.9E-08 52.9 3.2 24 93-116 25-48 (206)
483 PRK14530 adenylate kinase; Pro 96.6 0.0017 3.6E-08 53.6 3.0 25 92-116 3-27 (215)
484 PRK08118 topology modulation p 96.6 0.0018 3.8E-08 51.3 3.0 23 93-115 2-24 (167)
485 PF13521 AAA_28: AAA domain; P 96.6 0.0012 2.7E-08 51.8 2.1 22 94-115 1-22 (163)
486 TIGR02322 phosphon_PhnN phosph 96.6 0.0019 4.1E-08 51.5 3.2 22 94-115 3-24 (179)
487 COG4559 ABC-type hemin transpo 96.6 0.0019 4.1E-08 52.6 3.0 25 92-116 27-51 (259)
488 cd03293 ABC_NrtD_SsuB_transpor 96.6 0.0019 4.1E-08 53.4 3.2 23 93-115 31-53 (220)
489 cd03224 ABC_TM1139_LivF_branch 96.6 0.0018 4E-08 53.5 3.1 23 93-115 27-49 (222)
490 cd03292 ABC_FtsE_transporter F 96.6 0.0019 4.1E-08 53.1 3.2 24 93-116 28-51 (214)
491 cd03259 ABC_Carb_Solutes_like 96.6 0.0019 4.1E-08 53.1 3.1 24 92-115 26-49 (213)
492 cd03269 ABC_putative_ATPase Th 96.6 0.002 4.2E-08 52.9 3.2 23 93-115 27-49 (210)
493 cd03263 ABC_subfamily_A The AB 96.6 0.0019 4.2E-08 53.3 3.1 24 93-116 29-52 (220)
494 cd03229 ABC_Class3 This class 96.6 0.002 4.4E-08 51.4 3.2 24 93-116 27-50 (178)
495 TIGR02315 ABC_phnC phosphonate 96.6 0.0019 4.2E-08 54.2 3.1 24 93-116 29-52 (243)
496 COG0194 Gmk Guanylate kinase [ 96.5 0.0013 2.9E-08 52.3 2.0 24 93-116 5-28 (191)
497 cd03216 ABC_Carb_Monos_I This 96.5 0.0025 5.4E-08 50.2 3.5 25 92-116 26-50 (163)
498 cd03258 ABC_MetN_methionine_tr 96.5 0.002 4.4E-08 53.7 3.1 24 93-116 32-55 (233)
499 smart00072 GuKc Guanylate kina 96.5 0.0082 1.8E-07 48.2 6.6 23 94-116 4-26 (184)
500 smart00382 AAA ATPases associa 96.5 0.0026 5.6E-08 47.5 3.5 23 93-115 3-25 (148)
No 1
>COG0218 Predicted GTPase [General function prediction only]
Probab=100.00 E-value=6.2e-33 Score=219.68 Aligned_cols=188 Identities=43% Similarity=0.614 Sum_probs=165.3
Q ss_pred HhhhccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHH
Q 024325 79 AAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVK 158 (269)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~ 158 (269)
.++.....+|....|.|+++|++|+|||||||+|++....+.+|..||.|+-++++..+..+.+||.||+|+...+....
T Consensus 11 ~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~ 90 (200)
T COG0218 11 TSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVK 90 (200)
T ss_pred EecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHH
Confidence 34445667888899999999999999999999999976789999999999999999998889999999999998888899
Q ss_pred HHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (269)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 238 (269)
+.|..++.+|+....+..++++++|+.+++...|.++++++...++|+++|+||+|.+...+..+....+.+.+......
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999877776666666555433222
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
...++..|+.++.|+++|...|.+.+..
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2228999999999999999999887654
No 2
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=246.13 Aligned_cols=232 Identities=24% Similarity=0.264 Sum_probs=173.8
Q ss_pred hhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCCCCC
Q 024325 11 AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAP 90 (269)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (269)
|+-.+++...+.+..+...| +..+++.++ .+|+.+|||+|++|+........-.+.+.....++++..+....+ .
T Consensus 141 a~r~A~~~l~G~ls~~i~~l--r~~li~~~a-~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il--r 215 (454)
T COG0486 141 AARIALRQLQGALSQLINEL--REALLELLA-QVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL--R 215 (454)
T ss_pred HHHHHHHHcCCcHHHHHHHH--HHHHHHHHH-HheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--h
Confidence 34455666777777788888 667788888 899999999998887776554443334444444455554444433 3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch---hHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA---KEEVKDAWEEL 164 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~ 164 (269)
...+++++|.||+|||||+|+|+++ +.++|+++||||||+.... .|.++.++||+|++++.. +.+++..|
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~--- 291 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK--- 291 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH---
Confidence 5679999999999999999999999 7799999999999986544 388999999999997632 22233333
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
.....+|.++||+|++.+++..+..++. +...++|+++|+||+|+..+...... . .....+++.
T Consensus 292 -----~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~--~~~~~~~i~ 355 (454)
T COG0486 292 -----KAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--------K--LANGDAIIS 355 (454)
T ss_pred -----HHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh--------h--ccCCCceEE
Confidence 3334499999999999877788877777 44457899999999999987553221 0 012457999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
+||++|+|++.|.+.|...+.+.
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhc
Confidence 99999999999999999887653
No 3
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=1e-32 Score=238.32 Aligned_cols=235 Identities=21% Similarity=0.233 Sum_probs=173.2
Q ss_pred chhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhh--HHHhh--h
Q 024325 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLE--FFAAA--K 82 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~ 82 (269)
+-++.+.-+||+++++|+|.+||+.+.|..+. ++|.+++.++|+|. ..+.+++.+..++...+.+ .+... .
T Consensus 108 ~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~--~~GggiG~rGpGE~---~lE~drR~ir~rI~~i~~eLe~v~~~R~~ 182 (411)
T COG2262 108 QRARSREGKLQVELAQLRYELPRLVGSGSHLS--RLGGGIGFRGPGET---QLETDRRRIRRRIAKLKRELENVEKAREP 182 (411)
T ss_pred HHhccchhhhhhhHHhhhhhhhHhHhhhhhcc--cccCCCCCCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667799999999999999999998877 33566678999886 6777888999988654433 33332 2
Q ss_pred ccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE----EeCCcEEEEcCCCCCCcchhHHHH
Q 024325 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVK 158 (269)
Q Consensus 83 ~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~----~~~~~~~lvDtpG~~~~~~~~~~~ 158 (269)
.++.+.+.+.|.|+++|++|||||||+|+|++.. ..+.+..++|.|.... ..+..+.+-||.||...
T Consensus 183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~------- 253 (411)
T COG2262 183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD------- 253 (411)
T ss_pred HhhhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCccc-------
Confidence 4566666889999999999999999999999874 5567777777665432 22678999999999653
Q ss_pred HHHHHHHHHHHhccc---ccceEEEEEeCCCCCCcch----HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH
Q 024325 159 DAWEELVKEYVSTRV---SLKRVCLLIDTKWGVKPRD----HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (269)
Q Consensus 159 ~~~~~~~~~~~~~~~---~~d~vl~vid~~~~~~~~~----~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 231 (269)
.+..++..|.++++ .+|++++|+|++++..... ..++..+....+|+|+|+||+|++.+... ...
T Consensus 254 -LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~---- 325 (411)
T COG2262 254 -LPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAE---- 325 (411)
T ss_pred -CChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhh----
Confidence 44566666666665 4999999999997632222 23444444456899999999999876541 111
Q ss_pred HHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 232 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 232 ~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+... ..+.+++||++|+|++.|++.|.+.+..
T Consensus 326 ~~~~---~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 326 LERG---SPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred hhhc---CCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1111 1258999999999999999999987753
No 4
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.97 E-value=4.3e-30 Score=226.10 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=153.7
Q ss_pred hhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhh--HHHhhh--c
Q 024325 8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLE--FFAAAK--V 83 (269)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~--~ 83 (269)
-+..|..+||++.++++|.++++.+.++.+.... .+++.+||+|+ ....+++.+.+++.....+ .+...+ .
T Consensus 106 ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~--~~i~~~g~gE~---~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~ 180 (351)
T TIGR03156 106 RARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQG--GGIGTRGPGET---QLETDRRLIRERIAQLKKELEKVEKQRERQ 180 (351)
T ss_pred hccChHHHHHHHHHhccchhhhhhhhHHHHHhhc--CCCCCCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667799999999999999988776654444 33345777764 2244566677666433322 222221 2
Q ss_pred cCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHH
Q 024325 84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKD 159 (269)
Q Consensus 84 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~ 159 (269)
+..+.+.+.++|+++|+||+|||||+|+|++. . ..+++.+++|.|..... .+..+.+|||||+...... ...+
T Consensus 181 r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~-~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~-~lie 257 (351)
T TIGR03156 181 RRRRKRADVPTVALVGYTNAGKSTLFNALTGA-D-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH-ELVA 257 (351)
T ss_pred HhhhcccCCcEEEEECCCCCCHHHHHHHHhCC-c-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH-HHHH
Confidence 33333356799999999999999999999998 3 67888899998874322 3568999999998432111 1122
Q ss_pred HHHHHHHHHHhcccccceEEEEEeCCCCCCcchH----HHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325 160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (269)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 235 (269)
.+.... .....+|++++|+|++++....+. .++..+...++|+++|+||+|+.+..... .. ..
T Consensus 258 ~f~~tl----e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~----~~- 324 (351)
T TIGR03156 258 AFRATL----EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RL----EE- 324 (351)
T ss_pred HHHHHH----HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HH----Hh-
Confidence 222222 223349999999999865443332 23333333368999999999997643221 11 11
Q ss_pred CCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 236 NSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
...+++++||++|.|+++|+++|.+.
T Consensus 325 --~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 --GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred --CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 12468999999999999999999764
No 5
>PRK11058 GTPase HflX; Provisional
Probab=99.97 E-value=1.4e-29 Score=227.72 Aligned_cols=237 Identities=16% Similarity=0.207 Sum_probs=157.4
Q ss_pred chhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHH--hhh--
Q 024325 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFA--AAK-- 82 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~-- 82 (269)
+-+..|..+||+++|+|+|.+|||.+.+..+..++ .+++.++|+|. ..+.+++.+.+++.....++.. ..+
T Consensus 113 ~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~--gg~g~~g~ge~---~~e~d~r~i~~ri~~l~~~L~~~~~~r~~ 187 (426)
T PRK11058 113 QRARTHEGKLQVELAQLRHLATRLVRGWTHLERQK--GGIGLRGPGET---QLETDRRLLRNRIVQILSRLERVEKQREQ 187 (426)
T ss_pred HhcCChHHHHHHHHHhhhhhhhhhhccccchhhhc--CCCCCCCCChh---HhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455677799999999999999988886655554 44557888875 5566677777776443322221 111
Q ss_pred ccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e-C-CcEEEEcCCCCCCcchhHHHH
Q 024325 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-TKLCLVDLPGYGFAYAKEEVK 158 (269)
Q Consensus 83 ~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~-~-~~~~lvDtpG~~~~~~~~~~~ 158 (269)
.+..+...+.|+|+++|+||||||||+|+|++. .. .+++.+++|.|..... . + ..+.+|||||+.... +....
T Consensus 188 ~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~-~~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lv 264 (426)
T PRK11058 188 GRRARIKADVPTVSLVGYTNAGKSTLFNRITEA-RV-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLV 264 (426)
T ss_pred HHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCC-ce-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHH
Confidence 122222346789999999999999999999998 43 4788899998875422 1 3 378999999984321 11111
Q ss_pred HHHHHHHHHHHhcccccceEEEEEeCCCCCCcchH----HHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (269)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 234 (269)
+.+.. .......+|++++|+|++++....+. .++..+...++|+++|+||+|+.+.... . +.. . .
T Consensus 265 e~f~~----tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~----~~~-~-~ 333 (426)
T PRK11058 265 AAFKA----TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R----IDR-D-E 333 (426)
T ss_pred HHHHH----HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H----HHH-H-h
Confidence 22221 22334459999999999875433332 2344444446899999999999754211 1 110 0 1
Q ss_pred cCCCCCC-eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 235 NNSLVQP-VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 235 ~~~~~~~-vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
...+ ++++||++|+|+++|+++|.+.+.
T Consensus 334 ---~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 334 ---ENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ---cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 1233 589999999999999999988764
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.96 E-value=5.4e-29 Score=207.67 Aligned_cols=164 Identities=23% Similarity=0.282 Sum_probs=135.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
-.|+++|+||+|||||+|+|+|. .++++|+.|.|||... +...+.++.|+||||+..+.. ..-..|+....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~-----~l~~~m~~~a~ 80 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH-----ALGELMNKAAR 80 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch-----HHHHHHHHHHH
Confidence 36999999999999999999999 8999999999999963 344578899999999987632 22256777788
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
.++..+|+++||+|+..++...+..+++.+...+.|+++++||+|...+.. +....+.+... ..+..++++||+
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~-----~~f~~ivpiSA~ 155 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKL-----LPFKEIVPISAL 155 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhh-----CCcceEEEeecc
Confidence 888889999999999999999999999999887789999999999998766 33333333222 124589999999
Q ss_pred CCCCHHHHHHHHHHhhhhh
Q 024325 249 SGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~~~ 267 (269)
+|.|++.|.+.|...+...
T Consensus 156 ~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred ccCCHHHHHHHHHHhCCCC
Confidence 9999999999999887643
No 7
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.96 E-value=5.8e-28 Score=219.42 Aligned_cols=229 Identities=28% Similarity=0.322 Sum_probs=154.7
Q ss_pred hhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchh--hh-HHHhhhcc
Q 024325 8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNK--LE-FFAAAKVS 84 (269)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~--~~-~~~~~~~~ 84 (269)
+..|+..++....+.+......| +.+++...+ .+|+.+|||+|+.+.. +++.+..++.... ++ +.......
T Consensus 136 t~~~~~~al~~l~G~l~~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~~---~~~~i~~~i~~l~~~l~~l~~~~~~~ 209 (449)
T PRK05291 136 TEAAARLALRQLQGALSKLINEL--REELLELLA-LVEAAIDFPEEDIEFL---SDEKILEKLEELIAELEALLASARQG 209 (449)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHH--HHHHHHHHH-HheEEccCCCCCcccc---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777 556666666 7999999999875433 3444444442222 22 22222222
Q ss_pred CCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHH
Q 024325 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAW 161 (269)
Q Consensus 85 ~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~ 161 (269)
+.+ ...++|+++|+||+|||||+|+|++. ..+.+++.+|+|+|.... ..+..+.+|||||+.++. +.+...
T Consensus 210 ~~~--~~~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~- 283 (449)
T PRK05291 210 EIL--REGLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKI- 283 (449)
T ss_pred HHh--hcCCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHH-
Confidence 222 23479999999999999999999998 557789999999987532 246789999999986532 111110
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 162 ~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
...........+|++++|+|++.+....+..++.. ..+.|+++|+||+|+.+..... .....+
T Consensus 284 --gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~-------------~~~~~~ 346 (449)
T PRK05291 284 --GIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE-------------EENGKP 346 (449)
T ss_pred --HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh-------------hccCCc
Confidence 01111222344999999999987655554444433 3468999999999997643221 112467
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++|+++|.+.+.
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHh
Confidence 899999999999999999988764
No 8
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.96 E-value=2.4e-27 Score=190.73 Aligned_cols=170 Identities=41% Similarity=0.644 Sum_probs=135.0
Q ss_pred cCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325 84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (269)
Q Consensus 84 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 163 (269)
..++|+...++|+++|.+|+|||||+|+|++......+++.+|+|.++.++..+..+.+|||||++...........|..
T Consensus 10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHH
Confidence 34566677889999999999999999999997335667889999999887765668999999998765444444456667
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+...|+.....++++++|+|++.++...+..++..+...++|+++|+||+|+..+.+.......+++.+... ....+++
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-~~~~~v~ 168 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD-ADDPSVQ 168 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-cCCCceE
Confidence 777777766668999999999887887777888888888899999999999987766666666666666543 2235899
Q ss_pred EeeCCCCCCHH
Q 024325 244 MVSSKSGAGIR 254 (269)
Q Consensus 244 ~vSa~~g~gi~ 254 (269)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999974
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.95 E-value=2.3e-28 Score=189.85 Aligned_cols=153 Identities=29% Similarity=0.340 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
++|+++|.||+|||||+|+|+|.+ ..++++||+|.+.... ..+..+.++||||+..-...... +.+...|+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e----e~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE----ERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH----HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH----HHHHHHHH
Confidence 479999999999999999999994 7899999999997643 34678999999997653211111 12333443
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
. ....|++++|+|+.+ ...+..++.++.+.++|+++|+||+|.............+.+.+ +.|++++||++
T Consensus 75 ~-~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------g~pvi~~sa~~ 145 (156)
T PF02421_consen 75 L-SEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------GVPVIPVSART 145 (156)
T ss_dssp H-HTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------TS-EEEEBTTT
T ss_pred h-hcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------CCCEEEEEeCC
Confidence 3 234999999999975 34556788888889999999999999876443322233444433 58999999999
Q ss_pred CCCHHHHHHHH
Q 024325 250 GAGIRSLRTVL 260 (269)
Q Consensus 250 g~gi~~L~~~i 260 (269)
|+|+++|++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999876
No 10
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.95 E-value=5.4e-26 Score=185.15 Aligned_cols=189 Identities=42% Similarity=0.626 Sum_probs=145.1
Q ss_pred hhHHHhhhccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchh
Q 024325 75 LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
.+...+....+..+....++|+++|.+|+|||||+|+|++......+++.+|+|+++.+...+..+.+|||||+......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~ 86 (196)
T PRK00454 7 AEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVS 86 (196)
T ss_pred HHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCC
Confidence 34444444455555667899999999999999999999987335677888999999887776788999999998654333
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 234 (269)
....+.+..+...|+.....++++++|+|+..+....+.++..++...+.|+++++||+|+.+..+.......+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~ 166 (196)
T PRK00454 87 KEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF 166 (196)
T ss_pred chHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence 33445666777777777667788999999887666666667777777789999999999998766555544455554443
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
. ..+++++||++|.|++++++.|.+.+..
T Consensus 167 ~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 G---DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred c---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 2 4689999999999999999999887653
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=207.71 Aligned_cols=158 Identities=25% Similarity=0.393 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
|.|+++|.||+|||||+|+|++. +.++|+++||+|+|..+.. .+..|.++||+|+.... .+.+ ...+..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l---~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDEL---QELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHH---HHHHHHHHH
Confidence 78999999999999999999999 8899999999999986543 37779999999996532 1122 234444555
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.....+|+++||+|+..++++.|..+.++|...++|+++|+||+|-....+. ..+.. .+ ..-.+++|||.+
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~------~~efy-sl--G~g~~~~ISA~H 149 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL------AYEFY-SL--GFGEPVPISAEH 149 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhh------HHHHH-hc--CCCCceEeehhh
Confidence 5566699999999999999999999999999888999999999998733221 11111 11 134679999999
Q ss_pred CCCHHHHHHHHHHhh
Q 024325 250 GAGIRSLRTVLSKIA 264 (269)
Q Consensus 250 g~gi~~L~~~i~~~~ 264 (269)
|.|+++|++.+...+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999886
No 12
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=3.6e-26 Score=195.47 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=118.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
.|+++|+||||||||+|+|++. ..+.+++.|+||++... ...+..+.+|||||+..... . ....+...+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~---l~~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--S---LNRLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--h---HHHHHHHHHHH
Confidence 5899999999999999999998 67889999999998532 22356799999999865421 1 11233444445
Q ss_pred cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 250 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g 250 (269)
....+|++++|+|++..... +..++..+...+.|+++|+||+|+..+.........+.. .. ...+++++||++|
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~--~~~~v~~iSA~~g 149 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGD-GEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAI---LE--DFKDIVPISALTG 149 (270)
T ss_pred HHhhCCEEEEEEECCCCCch-HHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHh---hc--CCCceEEEecCCC
Confidence 55669999999999865333 356677777788999999999999865443332222221 11 1247999999999
Q ss_pred CCHHHHHHHHHHhhhh
Q 024325 251 AGIRSLRTVLSKIARF 266 (269)
Q Consensus 251 ~gi~~L~~~i~~~~~~ 266 (269)
.|+++|+++|.+.+..
T Consensus 150 ~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999987754
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=6.4e-26 Score=199.06 Aligned_cols=170 Identities=27% Similarity=0.341 Sum_probs=132.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchh-HHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVK 166 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~-~~~~~~~~~~~~ 166 (269)
..++|+++|.||+|||||+|+|+++ ....+++.+|||+|.. +...+..+.++||+|+.....- +.++ .+ + ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E-~~-S-v~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVE-KY-S-VA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceE-EE-e-eh
Confidence 4689999999999999999999999 6689999999999974 4445888999999999653111 1000 00 0 01
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc--hHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
........++++++|+|+..++..+|..+...+...+.++++|+||||+.+. ...+.....+...+... ...|+++
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l--~~a~i~~ 330 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL--DFAPIVF 330 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc--cCCeEEE
Confidence 1122233499999999999999999999999999999999999999999986 34444455555544432 3579999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+||++|.|++.|++.+......
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 14
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.94 E-value=1.1e-25 Score=203.51 Aligned_cols=229 Identities=20% Similarity=0.189 Sum_probs=151.4
Q ss_pred hhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCC
Q 024325 8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSF 87 (269)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (269)
+..|+-.+++...+.+.....+| +.+++.+.+ .+|+.+|||+|+.+. .+.......+......++... ....+
T Consensus 128 t~~~~~~A~~~l~G~ls~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~---~~~~~~l~~~~~~l~~ll~~~-~~~~~ 200 (442)
T TIGR00450 128 NNKVKDIALNKLAGELDQKIEAI--RKSLLQLLA-QVEVNIDYEEDDDEQ---DSLNQLLLSIIAELKDILNSY-KLEKL 200 (442)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHH--HHHHHHHHH-HeeEECCcCCCCccH---HHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 44556667777888888888888 667788887 899999999876322 121111112222222233322 11111
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
...++|+++|+||+|||||+|+|++. ..++++++||||++.... ..+..+.+|||||+.+.. +.++. + .
T Consensus 201 --~~g~kVvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~-~--g 272 (442)
T TIGR00450 201 --DDGFKLAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVER-L--G 272 (442)
T ss_pred --hcCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHH-H--H
Confidence 34579999999999999999999997 557899999999997533 236679999999986532 11111 0 0
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+.........+|++++|+|++.+.+..+. ++..+...++|+++|+||+|+... +. ..+.+ ....+++.
T Consensus 273 i~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~~~~------~~~~~~~~ 340 (442)
T TIGR00450 273 IEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL----EFFVS------SKVLNSSN 340 (442)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch----hhhhh------hcCCceEE
Confidence 11222333459999999999876554444 555555567899999999999754 11 11111 12357899
Q ss_pred eeCCCCCCHHHHHHHHHHhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~ 264 (269)
+||++ .|++++++.|.+.+
T Consensus 341 vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred EEEec-CCHHHHHHHHHHHH
Confidence 99998 58888887777655
No 15
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=8.3e-24 Score=173.16 Aligned_cols=170 Identities=29% Similarity=0.465 Sum_probs=116.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcch-hHHHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYV 169 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~-~~~~~~~~~~~~~~~~ 169 (269)
..++|+++|.+|+|||||+|+|++.. ..++..||+|.+......+ .+.+|||||++.... .....+.+..+...|+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999873 4577888999887665545 699999999754321 1111233344444444
Q ss_pred h-cccccceEEEEEeCCCCCC-----------cchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh---
Q 024325 170 S-TRVSLKRVCLLIDTKWGVK-----------PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--- 234 (269)
Q Consensus 170 ~-~~~~~d~vl~vid~~~~~~-----------~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--- 234 (269)
. ....++++++|+|+..... ..+.+++..+...++|+++|+||+|+.... ....+.+.+.+..
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPP 162 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCCcc
Confidence 3 4556889999999864211 123456666666789999999999997653 1222333333221
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+.....+++++||++| |+++++++|.+.+..
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 0011236899999999 999999999887654
No 16
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=4.1e-24 Score=184.92 Aligned_cols=162 Identities=24% Similarity=0.286 Sum_probs=122.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EE-eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
..|+++|.||||||||+|+|++. ..+.+++.+.||++... .. .+..+.++||||+..... ... ..+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~---~~~~~~~~ 79 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALN---RAMNKAAW 79 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHH---HHHHHHHH
Confidence 46999999999999999999998 67889999999987642 22 346899999999866421 111 22333334
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC-chHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
.....+|++++|+|++..+...+..+++.+...+.|+++|+||+|+.. ........+.+.+. ....+++++||+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~-----~~~~~i~~iSA~ 154 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSEL-----MDFAEIVPISAL 154 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh-----CCCCeEEEecCC
Confidence 445569999999999876777777888888777899999999999984 34444433333321 124679999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 024325 249 SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~ 265 (269)
+|.|+++|+++|.+.+.
T Consensus 155 ~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 155 KGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999999998764
No 17
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=3.1e-24 Score=188.64 Aligned_cols=163 Identities=22% Similarity=0.208 Sum_probs=120.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
..+|+++|.+|+|||||+|+|++. ..+.+++.++||++... ...+..+.+|||||+...... ....+.+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-----l~~~~~r~~ 125 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-----LEKAMVRCA 125 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-----HHHHHHHHH
Confidence 458999999999999999999998 66788899999987532 233678999999998643211 112333333
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
......+|++++|+|+..++...+..+++.+...+.|.++|+||+|+... ... .+.+.+... ....+++++||+
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~----~~~~~l~~~-~~~~~i~~iSAk 199 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLN----DIKAFLTEN-HPDSLLFPISAL 199 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHH----HHHHHHHhc-CCCcEEEEEecc
Confidence 34455699999999998777766667788777778888999999998653 222 222222221 123579999999
Q ss_pred CCCCHHHHHHHHHHhhhh
Q 024325 249 SGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~~ 266 (269)
+|.|+++|+++|...+..
T Consensus 200 tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CccCHHHHHHHHHHhCCC
Confidence 999999999999987654
No 18
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.92 E-value=2.2e-23 Score=164.62 Aligned_cols=169 Identities=45% Similarity=0.712 Sum_probs=131.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (269)
|+++|.+|+|||||+|.|++.......++.+++|........+..+.++||||++.........+.+..+...|+.....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 79999999999999999995434566778888888887776677899999999977644444445566666777777777
Q ss_pred cceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHH
Q 024325 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 254 (269)
Q Consensus 175 ~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~ 254 (269)
++.+++++|..........+++.++...+.|+++|+||+|+..+.........+...+.. .....+++++||+++.|++
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~~ 160 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPIILFSSLKGQGID 160 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceEEEecCCCCCHH
Confidence 899999999886666666778888888889999999999998766555444444444431 1235789999999999999
Q ss_pred HHHHHHHHhh
Q 024325 255 SLRTVLSKIA 264 (269)
Q Consensus 255 ~L~~~i~~~~ 264 (269)
+++++|.+.+
T Consensus 161 ~l~~~l~~~~ 170 (170)
T cd01876 161 ELRALIEKWL 170 (170)
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 19
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=1.9e-23 Score=164.89 Aligned_cols=156 Identities=27% Similarity=0.368 Sum_probs=106.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEE---e-CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~---~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.|+++|++|+|||||+|+|++.. ........+++|.+..+.. . +..+.+|||||.. .+...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-------------~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-------------KFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-------------HHHHHH
Confidence 68999999999999999999752 1111122456676654322 2 5679999999962 112223
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
......+|++++|+|+..++.....+.+..+...+. |+++|+||+|+..........+.+.+.+........+++++||
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSA 148 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeC
Confidence 333445999999999987555555555555555555 9999999999986543333334444444332113578999999
Q ss_pred CCCCCHHHHHHHHHH
Q 024325 248 KSGAGIRSLRTVLSK 262 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~ 262 (269)
++|+|++++++.|..
T Consensus 149 ~~~~~v~~l~~~l~~ 163 (164)
T cd04171 149 VTGEGIEELKEYLDE 163 (164)
T ss_pred CCCcCHHHHHHHHhh
Confidence 999999999998864
No 20
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.9e-23 Score=186.09 Aligned_cols=161 Identities=22% Similarity=0.259 Sum_probs=113.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---C-CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.|+|+|.||||||||+|+|++. . ..++++|+||+....... + ..+.++||||+.+..... ..+...++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~-k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l 232 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAA-K-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG------AGLGIRFL 232 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCC-c-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch------hhHHHHHH
Confidence 8999999999999999999998 4 589999999998765432 2 359999999997643221 11223444
Q ss_pred hcccccceEEEEEeCCCC----CCcchHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 170 STRVSLKRVCLLIDTKWG----VKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~----~~~~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
+..+.+|++++|+|++.. .......+++.+.. ..+|+++|+||+|+....+.....+.+.+.+ ....
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~----~~~~ 308 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL----GWEG 308 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh----CCCC
Confidence 455669999999998621 11112345555544 2589999999999986554433333332221 1124
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++++||+++.|+++|+++|.+.+..
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 78999999999999999999988754
No 21
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=4.1e-23 Score=188.18 Aligned_cols=170 Identities=25% Similarity=0.274 Sum_probs=127.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+|||||+|+|++. ....+++.+|+|++... ...+..+.+|||||+..........+.+. ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHH
Confidence 4689999999999999999999998 55778999999998742 23467799999999865422211111111 112
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
.......+|++++|+|+..+...++..++..+...+.|+++|+||+|+.+..........+...+.. ....|++++||
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~--~~~~~i~~~SA 326 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPF--LDYAPIVFISA 326 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhccc--ccCCCEEEEeC
Confidence 2233445999999999999888888888888888889999999999998655444444444443322 12578999999
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024325 248 KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~ 265 (269)
++|.|++++++.+.+.+.
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887654
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=3.4e-23 Score=188.39 Aligned_cols=170 Identities=24% Similarity=0.273 Sum_probs=124.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+|||||+|+|++. ....+++.+|||++... ...+..+.+|||||+..........+.+. ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HHH
Confidence 4578999999999999999999998 55678999999998642 23466899999999865322111111111 111
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC-CchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
.......+|++++|+|+..+.+.++..++..+...+.|+++|+||+|+. +..........+...+... ...|++++|
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~S 325 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL--DFAPIVFIS 325 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC--CCCceEEEe
Confidence 1223345999999999999888888888888888899999999999998 3333334444444333221 247899999
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q 024325 247 SKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~ 265 (269)
|++|.|+++++++|.+.+.
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 23
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=2.5e-23 Score=162.86 Aligned_cols=153 Identities=24% Similarity=0.345 Sum_probs=112.6
Q ss_pred EEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 96 ~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
+++|.+|+|||||+|+|++. .....++.+++|++..... .+..+.+|||||+..... ... ..+...+....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~---~~~~~~~~~~~ 74 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GIS---KEIREQAELAI 74 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHH---HHHHHHHHHHH
Confidence 47899999999999999997 5566788888988765433 356799999999866421 111 11222222333
Q ss_pred cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g 252 (269)
..+|++++|+|+..+....+..+..++...+.|+++|+||+|+...... ... +... ...+++++||++|.|
T Consensus 75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~----~~~~--~~~~~~~~Sa~~~~g 145 (157)
T cd01894 75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAE----FYSL--GFGEPIPISAEHGRG 145 (157)
T ss_pred HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHH----HHhc--CCCCeEEEecccCCC
Confidence 4499999999998777777777888888788999999999999875433 111 1111 123789999999999
Q ss_pred HHHHHHHHHHh
Q 024325 253 IRSLRTVLSKI 263 (269)
Q Consensus 253 i~~L~~~i~~~ 263 (269)
+++++++|.+.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 24
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.6e-24 Score=189.09 Aligned_cols=221 Identities=23% Similarity=0.269 Sum_probs=138.5
Q ss_pred CcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhc---hhhhHHHhhhccCCCCCCCCcEEEEEcCCCCChHHHH
Q 024325 33 RRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR---NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSML 109 (269)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsLi 109 (269)
+..+++..+ ..++.+||.++. +.... +-.++...... .....+........+ ...+.|+++|+||+|||||+
T Consensus 211 r~~lIe~~a-~l~a~idf~e~~-~l~~~-~t~~~~~~~~~l~d~v~s~l~~~~~~e~l--q~gl~iaIvGrPNvGKSSLl 285 (531)
T KOG1191|consen 211 RKILIEALA-GLEARIDFEEER-PLEEI-ETVEIFIESLSLLDDVLSHLNKADEIERL--QSGLQIAIVGRPNVGKSSLL 285 (531)
T ss_pred HHHHHHHHh-ccceeechhhcC-chhhc-cchhhhhHHHHHHHHHHHHHHhhhhHHHh--hcCCeEEEEcCCCCCHHHHH
Confidence 556788888 788889996542 11110 00011111111 111111111111111 23479999999999999999
Q ss_pred HHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325 110 NALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (269)
Q Consensus 110 n~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~ 186 (269)
|+|.+. +.++|++.||||+|.. +...|.++.++||+|+.+. ..+.++. .-++........+|++++|+|+..
T Consensus 286 NaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~---~gI~rA~k~~~~advi~~vvda~~ 360 (531)
T KOG1191|consen 286 NALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEA---LGIERARKRIERADVILLVVDAEE 360 (531)
T ss_pred HHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc-cCChhHH---HhHHHHHHHHhhcCEEEEEecccc
Confidence 999999 7899999999999974 4445889999999999872 1222211 112233334445999999999977
Q ss_pred CCCcchHHHHHHHHhh------------CCcEEEEEecCCCCCch-HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325 187 GVKPRDHELISLMERS------------QTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 253 (269)
Q Consensus 187 ~~~~~~~~~~~~l~~~------------~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi 253 (269)
.....+..+.+.+... ..|++++.||+|+.++- +....-..+... ........+..+||++++|+
T Consensus 361 ~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~~~~~~i~~~vs~~tkeg~ 438 (531)
T KOG1191|consen 361 SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EGRSVFPIVVEVSCTTKEGC 438 (531)
T ss_pred cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--ccCcccceEEEeeechhhhH
Confidence 7777777766666542 36899999999998762 111100000000 11112334566999999999
Q ss_pred HHHHHHHHHhhh
Q 024325 254 RSLRTVLSKIAR 265 (269)
Q Consensus 254 ~~L~~~i~~~~~ 265 (269)
+.|.+.|...+.
T Consensus 439 ~~L~~all~~~~ 450 (531)
T KOG1191|consen 439 ERLSTALLNIVE 450 (531)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 25
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3.2e-23 Score=190.12 Aligned_cols=171 Identities=20% Similarity=0.202 Sum_probs=122.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+|||||+|+|++. ....+++.+|||++... ...+..+.+|||||+........-.+.+..+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~- 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT- 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH-
Confidence 4589999999999999999999998 45678999999998642 234667899999998543111100111111110
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
......+|++++|+|++.+...++..++..+...++|+++|+||+|+..+.........+.+.+.. ....|++++||
T Consensus 288 -~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~~~SA 364 (472)
T PRK03003 288 -HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQ--VPWAPRVNISA 364 (472)
T ss_pred -HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhccc--CCCCCEEEEEC
Confidence 112234999999999998888888888888877889999999999998643322222233322221 12468999999
Q ss_pred CCCCCHHHHHHHHHHhhhh
Q 024325 248 KSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~~ 266 (269)
++|.|++++++.|.+.++.
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 26
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=3.4e-23 Score=168.42 Aligned_cols=160 Identities=23% Similarity=0.333 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCceeEeeEE---Ee--------------CCcEEEEcCCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFF---KL--------------GTKLCLVDLPGYGF 150 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~~~~~~---~~--------------~~~~~lvDtpG~~~ 150 (269)
.+|+++|++|+|||||+++|++.. .....+..+|+|.+..+. .. +..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 379999999999999999999731 112233355677665421 11 5679999999972
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
.+...+......+|.+++|+|+..+....+.+.+......+.|+++|+||+|+..........+.+.+
T Consensus 80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 23344445555589999999998766655555555555567899999999999865444333333433
Q ss_pred HHH----hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 231 SLK----ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 231 ~~~----~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+. .......+++++||++|+|+++|+++|.+.+.
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 222 11223578999999999999999999988754
No 27
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=4e-23 Score=180.63 Aligned_cols=163 Identities=21% Similarity=0.263 Sum_probs=115.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...|+++|.||||||||+|+|++. . ..++++|+||.+.+... .+..+.++||||+.+..... ..+...
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a-~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~ 229 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAA-K-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHR 229 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcC-C-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHH
Confidence 357999999999999999999987 3 56899999999876432 24579999999997643221 123345
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
|++..+.++++++|+|++......+ ..+.+.+.. .++|+++|+||+|+.+....... .+...... ...+
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~--~~~~~~~~---~~~~ 304 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREK--RAALELAA---LGGP 304 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHH--HHHHHHHh---cCCC
Confidence 5555666999999999885332222 234444443 26899999999999865433211 11111111 2468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
++++||++++|+++|+++|.+.+...
T Consensus 305 i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 305 VFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999887654
No 28
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=5.6e-23 Score=163.18 Aligned_cols=159 Identities=23% Similarity=0.218 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
|+|+++|.+|+|||||+|+|++.. ..+++++++|.+..... .+..+.+|||||+.+....+. ..+........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER--NTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC--chHHHHHHHHH
Confidence 589999999999999999999973 34567788887775433 246899999999853211110 00100000111
Q ss_pred hcccccceEEEEEeCCCCCCc---chHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 170 STRVSLKRVCLLIDTKWGVKP---RDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~---~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
. ...|++++|+|++..... ....++..+... +.|+++|+||+|+........ ..+... ....++++
T Consensus 77 ~--~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~~---~~~~~~~~ 147 (168)
T cd01897 77 A--HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEEEE---LEGEEVLK 147 (168)
T ss_pred H--hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HHHhhh---hccCceEE
Confidence 1 125889999999754321 123455566554 789999999999986544332 111111 12468999
Q ss_pred eeCCCCCCHHHHHHHHHHhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~ 264 (269)
+||++|.|+++++++|.+.+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 148 ISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred EEecccCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 29
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1.2e-22 Score=161.39 Aligned_cols=167 Identities=26% Similarity=0.296 Sum_probs=117.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++. .....++.+++|.+.. +...+..+.+|||||+..........+.+.. ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~--~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSV--LRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHH--HHH
Confidence 468999999999999999999997 4455677788877763 2234567899999998654211111111110 111
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc--hHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
......+|++++|+|+..+.......++..+...+.|+++|+||+|+... .......+.+.+.+... ...+++++|
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S 156 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL--DYAPIVFIS 156 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccc--cCCceEEEe
Confidence 22334589999999998777766667777777678999999999999876 33444444444433211 246899999
Q ss_pred CCCCCCHHHHHHHHHHh
Q 024325 247 SKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~ 263 (269)
|++++|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998765
No 30
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.90 E-value=1.1e-22 Score=166.95 Aligned_cols=157 Identities=19% Similarity=0.255 Sum_probs=104.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eC-CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
.+.++|+++|++|||||||+|++++.. ..+.+.+++|.+..... .+ ..+.+|||||+....... ....+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ-LVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH-HHHHHHHHH
Confidence 556899999999999999999999973 34555556665543221 13 379999999985432221 111222221
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchH-HHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.....+|++++|+|++.+....+. .+.+.+.. .++|+++|+||+|+....... ... .....+
T Consensus 116 ----~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-------~~~---~~~~~~ 181 (204)
T cd01878 116 ----EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-------ERL---EAGRPD 181 (204)
T ss_pred ----HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-------HHh---hcCCCc
Confidence 123348999999999865443332 23333333 368999999999998654332 111 123568
Q ss_pred eEEeeCCCCCCHHHHHHHHHHh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
++++||++|.|+++++++|...
T Consensus 182 ~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 182 AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred eEEEEcCCCCCHHHHHHHHHhh
Confidence 9999999999999999999765
No 31
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=5.7e-23 Score=184.01 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=112.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.|+++|.||||||||||+|++.. ..++++|+||...++... +..+.++||||+.+.... +..+...|+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~------~~gLg~~fL 231 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE------GVGLGHQFL 231 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc------cchHHHHHH
Confidence 89999999999999999999983 457899999999875433 568999999999754221 123445566
Q ss_pred hcccccceEEEEEeCCCCC--Cc--chHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 170 STRVSLKRVCLLIDTKWGV--KP--RDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~--~~--~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
+..+.++++++|+|++... .+ ....+.+.+.. .++|+++|+||+|+....+ ..+.+.+.+ ..
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l------~~ 302 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKL------GP 302 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHh------CC
Confidence 6666699999999987421 11 12334445543 3689999999999853321 122222221 25
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++++||++++|+++|+++|.+.+..
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999887754
No 32
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=1.3e-22 Score=164.56 Aligned_cols=160 Identities=26% Similarity=0.441 Sum_probs=117.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcc----------------ccCCCCCceeEe---eEE--EeCCcEEEEcCCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV----------------RTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGF 150 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~----------------~~s~~~gtt~~~---~~~--~~~~~~~lvDtpG~~~ 150 (269)
.++|+++|+.++|||||+++|++..... ......+.|.+. .+. ..+..+.++||||+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-- 80 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-- 80 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS--
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc--
Confidence 4689999999999999999998652110 000112333332 333 44678999999997
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
..+..........+|++++|+|+..+...+..+++..+...++|+++|+||+|+. ..+..+....+..
T Consensus 81 -----------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 81 -----------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKE 148 (188)
T ss_dssp -----------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHH
T ss_pred -----------cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHH
Confidence 2344455555667999999999999999999999999999999999999999999 4445555555553
Q ss_pred HH-HhcCC---CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 231 SL-KANNS---LVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 231 ~~-~~~~~---~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+ ..... ...|++++||++|.|+++|++.|.+.++
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 33 33322 1468999999999999999999998764
No 33
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2.2e-22 Score=158.46 Aligned_cols=160 Identities=26% Similarity=0.286 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.+|+++|.+|+|||||+|+|++. ..+.+++.+.+++...... .+..+.+|||||+........ +. +.....
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~---~~~~~~ 77 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG--ER---MVKAAW 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH--HH---HHHHHH
Confidence 57999999999999999999998 5666777777776653322 245789999999876432211 11 112222
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC-chHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
.....+|.+++|+|+.......+..+...+...+.|+++|+||+|+.. +.........+... ....+++++|++
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~ 152 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKEL-----GPFAEIFPISAL 152 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhc-----cCCCceEEEEec
Confidence 333458999999999876566666777777777899999999999984 33333333333221 114689999999
Q ss_pred CCCCHHHHHHHHHHh
Q 024325 249 SGAGIRSLRTVLSKI 263 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~ 263 (269)
++.|+++++++|.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999875
No 34
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.90 E-value=4.7e-23 Score=163.82 Aligned_cols=157 Identities=21% Similarity=0.241 Sum_probs=105.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCC-cEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~-~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.|+++|.+|||||||+|+|.+.. ..++..+++|.+.... ..+. .+.+|||||+....... ..+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence 58999999999999999999873 3677778887765322 2244 79999999985421111 11222333
Q ss_pred hcccccceEEEEEeCCCC-CCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 170 STRVSLKRVCLLIDTKWG-VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~-~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
+....+|++++|+|++.. ..... ..+.+.+.. .++|+++|+||+|+.+.......... ..... ...++
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~---~~~~~--~~~~~ 148 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKE---LLKEL--WGKPV 148 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHH---HHhhC--CCCCE
Confidence 334459999999999854 12111 234444433 25899999999999876554332222 22211 24679
Q ss_pred EEeeCCCCCCHHHHHHHHHHh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~ 263 (269)
+++||++|.|+++++++|.+.
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 149 FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 999999999999999999765
No 35
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=2e-22 Score=159.78 Aligned_cols=157 Identities=22% Similarity=0.298 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
|.|+++|.+|+|||||+|+|++. .. .....+++|.+..... .+..+.+|||||... +..+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT-NV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc-cc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHHH
Confidence 57999999999999999999987 32 2334456776654222 145799999999632 111112
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh---cCCCCCCeE
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVM 243 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~vi 243 (269)
.+ ...+|++++|+|++.+........+..+...++|+++|+||+|+.... .......+...... ......+++
T Consensus 69 ~~---~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01887 69 RG---ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIV 144 (168)
T ss_pred HH---HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEE
Confidence 22 234999999999987665555666777777889999999999987532 11222222211111 112246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|+|+++|+++|.+...
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 145 PTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred EeecccCCCHHHHHHHHHHhhh
Confidence 9999999999999999987654
No 36
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=8.1e-23 Score=178.53 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=111.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---C-CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...|+++|.||||||||+|+|++.. ..++++|+||...+.... + ..+.++||||+.+..... ..+...
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~ 228 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHR 228 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHH
Confidence 3579999999999999999999873 568999999988654332 3 679999999996542211 123334
Q ss_pred HHhcccccceEEEEEeCCCCC---Ccch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGV---KPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~---~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 238 (269)
|++..+.++++++|+|++..- ...+ ..+.+.+.. ..+|+++|+||+|+..+.......+.+.+. .
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~------~ 302 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA------L 302 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH------c
Confidence 445555699999999987531 1111 223333432 368999999999998764443333333221 1
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
..+++++||++++|+++|+++|.+.+
T Consensus 303 ~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 36899999999999999999998765
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.8e-22 Score=185.15 Aligned_cols=160 Identities=21% Similarity=0.266 Sum_probs=117.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+.|+|+++|.+|+|||||+|+|++. ..+.+++.||+|++..... .+..+.+|||||+.... ..+...+.. .
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~---~ 110 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAE---Q 110 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHH---H
Confidence 3579999999999999999999997 5577899999999876543 36679999999985321 111111222 2
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
.......+|++++|+|++.+.+..+..+..++...++|+++|+||+|+...... ..+.. .. ... ..++|||
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~------~~~~~-~~-g~~-~~~~iSA 181 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD------AAALW-SL-GLG-EPHPVSA 181 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh------hHHHH-hc-CCC-CeEEEEc
Confidence 222233499999999999887777788888888889999999999998643211 11111 11 122 3479999
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024325 248 KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~ 265 (269)
++|.|+++|+++|...+.
T Consensus 182 ~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALP 199 (472)
T ss_pred CCCCCcHHHHHHHHhhcc
Confidence 999999999999987764
No 38
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.3e-22 Score=183.95 Aligned_cols=162 Identities=23% Similarity=0.238 Sum_probs=112.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
...|+|+|.||||||||+|+|++.. ..++++|+||.+.+... .+..+.++||||+.+..... ..+...+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------~gLg~~f 230 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------KGLGLDF 230 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------hHHHHHH
Confidence 3589999999999999999999973 46799999999875443 35679999999997542211 1233345
Q ss_pred HhcccccceEEEEEeCCCCC----CcchH-HHHHHHH--------------hhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 169 VSTRVSLKRVCLLIDTKWGV----KPRDH-ELISLME--------------RSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~----~~~~~-~~~~~l~--------------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
++....+|++++|+|++... ...+. .+...|. ...+|+++|+||+|+.+..+... .+.
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e---~l~ 307 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE---FVR 307 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH---HHH
Confidence 55556699999999997421 11111 1222221 23689999999999975543322 222
Q ss_pred HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
..+.. ...++++|||++++|+++|+.+|.+.+...
T Consensus 308 ~~l~~---~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 308 PELEA---RGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred HHHHH---cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 22222 246899999999999999999999887543
No 39
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=2.4e-22 Score=192.40 Aligned_cols=172 Identities=20% Similarity=0.193 Sum_probs=124.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...++|+++|.+|+|||||+|+|++. ....+++.+|||++.. +...+..+.+|||||+........-.+.+..+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~-- 524 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSL-- 524 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHH--
Confidence 34689999999999999999999998 5567899999999874 23346789999999985432111101111111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
........+|++++|+|++.+.+.++..++..+...++|+++|+||+|+.+..........+...+. .....+++++|
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~--~~~~~~ii~iS 602 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFD--RVTWARRVNLS 602 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhcc--CCCCCCEEEEE
Confidence 1122334599999999999888888888888777788999999999999865433322222332221 11246889999
Q ss_pred CCCCCCHHHHHHHHHHhhhh
Q 024325 247 SKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~~ 266 (269)
|++|.|+++|++.+.+.+..
T Consensus 603 Aktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 40
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=3e-22 Score=156.64 Aligned_cols=152 Identities=26% Similarity=0.352 Sum_probs=110.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.+|+++|++|+|||||+|++++. ....+++.+++|.+..... .+..+.+|||||+.+.... ... .......
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~---~~~~~~~ 75 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEK---IGIERAR 75 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHH---HHHHHHH
Confidence 47999999999999999999998 5567788899998865322 3567999999998664221 110 0111122
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.....+|++++|+|+.......+...+.. ..+.|+++|+||+|+.+.... .......+++++||++
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~------------~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL------------LSLLAGKPIIAISAKT 141 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc------------ccccCCCceEEEECCC
Confidence 22335999999999987555555544443 457999999999999865433 1112357899999999
Q ss_pred CCCHHHHHHHHHHhh
Q 024325 250 GAGIRSLRTVLSKIA 264 (269)
Q Consensus 250 g~gi~~L~~~i~~~~ 264 (269)
+.|+++|+++|.+.+
T Consensus 142 ~~~v~~l~~~l~~~~ 156 (157)
T cd04164 142 GEGLDELKEALLELA 156 (157)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998764
No 41
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=3.3e-22 Score=161.37 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=111.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccC---------------CCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS---------------DKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKE 155 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s---------------~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~ 155 (269)
+|+++|.+|+|||||+|+|++.. ..... ...++|.+.... ..+..+.+|||||+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVT-GDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhc-CCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH----
Confidence 48999999999999999999873 22111 122344443222 22567899999997321
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 235 (269)
......+ ...+|++++|+|+.++......+++..+...+.|+++|+||+|+..+.+.......+.+.+...
T Consensus 76 ------~~~~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 76 ------SSEVIRG---LSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred ------HHHHHHH---HHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 1111222 2249999999999887766667777777777899999999999997555555555555554432
Q ss_pred C-----------CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 236 N-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 236 ~-----------~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
. ....+++++||++|.|+++++++|...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2 23578999999999999999999988763
No 42
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=3.1e-22 Score=182.12 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=119.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
+|+++|.+|+|||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... .+.+. ..+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~---~~~~~~~~~ 74 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLD---KQIREQAEI 74 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHH---HHHHHHHHH
Confidence 3899999999999999999998 5678999999999875443 4678999999998542 12222 222233333
Q ss_pred cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 250 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g 250 (269)
....+|++++|+|+..+....+..+.+++...++|+++|+||+|+....... . + +... ...+++++||++|
T Consensus 75 ~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~---~---~-~~~l--g~~~~~~vSa~~g 145 (429)
T TIGR03594 75 AIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA---A---E-FYSL--GFGEPIPISAEHG 145 (429)
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH---H---H-HHhc--CCCCeEEEeCCcC
Confidence 4455999999999998888888889999988899999999999987643211 1 1 1111 1347899999999
Q ss_pred CCHHHHHHHHHHhhh
Q 024325 251 AGIRSLRTVLSKIAR 265 (269)
Q Consensus 251 ~gi~~L~~~i~~~~~ 265 (269)
.|+++|++++...+.
T Consensus 146 ~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 146 RGIGDLLDAILELLP 160 (429)
T ss_pred CChHHHHHHHHHhcC
Confidence 999999999987763
No 43
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=7.9e-22 Score=188.88 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=120.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...++|+++|.||+|||||+|+|++. ..+.+++.||+|++..... .+..+.+|||||+.... +.+.. .+..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~---~~~~ 346 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGIDS---AIAS 346 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHHH---HHHH
Confidence 34588999999999999999999998 5678999999999976543 25679999999986421 11111 2222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
........+|++++|+|+..++...+..+.+.+...++|+++|+||+|+...... ..+... . . ....+++|
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~------~~~~~~-l-g-~~~~~~iS 417 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD------AAEFWK-L-G-LGEPYPIS 417 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh------HHHHHH-c-C-CCCeEEEE
Confidence 2223334599999999999888888888889998889999999999998653211 111111 1 1 22458999
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q 024325 247 SKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~ 265 (269)
|++|.|+++|+++|.+.+.
T Consensus 418 A~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred CCCCCCchHHHHHHHHhcc
Confidence 9999999999999988764
No 44
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=8.2e-22 Score=154.61 Aligned_cols=154 Identities=23% Similarity=0.277 Sum_probs=108.2
Q ss_pred EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (269)
Q Consensus 97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
++|.+|+|||||+|++++.. ..++.++++|.+... ...+..+.+|||||+....... ....+...++.. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~~~~-~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS----EDEKVARDFLLG-E 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC----hhHHHHHHHhcC-C
Confidence 57999999999999999973 567888988887642 2235679999999985432111 011233444443 5
Q ss_pred ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 253 (269)
Q Consensus 174 ~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi 253 (269)
.+|++++|+|+... .....+...+...++|+++|+||+|+.+........+.+... ...+++++||++|+|+
T Consensus 74 ~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~iSa~~~~~~ 145 (158)
T cd01879 74 KPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL------LGVPVVPTSARKGEGI 145 (158)
T ss_pred CCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh------hCCCeEEEEccCCCCH
Confidence 69999999998752 223445555666789999999999997654332222222221 1468999999999999
Q ss_pred HHHHHHHHHhhh
Q 024325 254 RSLRTVLSKIAR 265 (269)
Q Consensus 254 ~~L~~~i~~~~~ 265 (269)
++++++|.+..+
T Consensus 146 ~~l~~~l~~~~~ 157 (158)
T cd01879 146 DELKDAIAELAE 157 (158)
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 45
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.5e-21 Score=177.81 Aligned_cols=155 Identities=23% Similarity=0.340 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
|+|+++|.+|+|||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+.... .... ..+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~---~~~~~~~~ 75 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFE---KQIREQAE 75 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHH---HHHHHHHH
Confidence 68999999999999999999998 5678899999999875432 36789999999986521 1111 12222233
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.....+|++++|+|+..+....+..+.+++...++|+++|+||+|+..... ...+.. .. ...+++++||++
T Consensus 76 ~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~------~~~~~~-~l--g~~~~~~iSa~~ 146 (435)
T PRK00093 76 LAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA------DAYEFY-SL--GLGEPYPISAEH 146 (435)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh------hHHHHH-hc--CCCCCEEEEeeC
Confidence 334459999999999988888888888888888999999999999764221 111111 11 123479999999
Q ss_pred CCCHHHHHHHHHH
Q 024325 250 GAGIRSLRTVLSK 262 (269)
Q Consensus 250 g~gi~~L~~~i~~ 262 (269)
|.|+++++++|..
T Consensus 147 g~gv~~l~~~I~~ 159 (435)
T PRK00093 147 GRGIGDLLDAILE 159 (435)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999976
No 46
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=3.3e-21 Score=158.10 Aligned_cols=159 Identities=23% Similarity=0.279 Sum_probs=107.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEE------------------------------------Ee
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFF------------------------------------KL 136 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~------------------------------------~~ 136 (269)
+|+++|+.|+|||||+.+|.+... ...-.-..+.|-...+. ..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 699999999999999999976520 00000011111111100 01
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcchHHHHHHHHhhCC-cEEEEEecCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTD 214 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~~~~~~~~~~~l~~~~~-p~iiv~NK~D 214 (269)
...+.||||||. ..+...+...+..+|.+++|+|+..+ ...+....+..+...+. |+++|+||+|
T Consensus 82 ~~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence 156899999995 34556666777779999999999864 34454556666655554 6999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+..........+.+++.+........+++++||++|+|+++|+++|.+.+.
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 987555544455555554433233578999999999999999999988664
No 47
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.88 E-value=5.9e-21 Score=155.25 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=112.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcC----c-c---------ccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWG----V-V---------RTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKE 155 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~----~-~---------~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~ 155 (269)
.+|+++|++++|||||+++|++... . . ......|+|.+.... ..+..+.++||||+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~------- 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH------- 75 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH-------
Confidence 5799999999999999999986410 0 0 011145677665433 23667999999997
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHH-HHHHHHHHHHH
Q 024325 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEESLK 233 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~ 233 (269)
..+.......+..+|.+++|+|+..+...++.+++..+...++| +|+|+||+|+....+.. ...+.+...+.
T Consensus 76 ------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 76 ------ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred ------HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 23444555566679999999999988888888899999888887 77999999997544332 23445666555
Q ss_pred hcC--CCCCCeEEeeCCCCCCH----------HHHHHHHHH
Q 024325 234 ANN--SLVQPVMMVSSKSGAGI----------RSLRTVLSK 262 (269)
Q Consensus 234 ~~~--~~~~~vi~vSa~~g~gi----------~~L~~~i~~ 262 (269)
... ....|++++||++|.|+ ..|++.|..
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~ 190 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDS 190 (195)
T ss_pred HhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHh
Confidence 432 23578999999999984 466666644
No 48
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=1.3e-21 Score=155.17 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=94.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCc--cccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~--~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||+|+|++.... ........+|.... +...+..+.+|||||... +..+...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LRSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHH
Confidence 4899999999999999999875211 01111122232222 222367799999999732 12222233
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHH-HH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISL-ME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~-l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+ ..+|++++|+|+........ ..++.. +. ..+.|+++|+||+|+............+............+++
T Consensus 71 ~---~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (167)
T cd04160 71 Y---AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVL 147 (167)
T ss_pred h---CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEE
Confidence 3 34899999999874321111 122222 22 2468999999999987654333333332222211122245799
Q ss_pred EeeCCCCCCHHHHHHHHHH
Q 024325 244 MVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~ 262 (269)
++||++|+|+++++++|.+
T Consensus 148 ~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 148 PVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EeeCCCCcCHHHHHHHHhc
Confidence 9999999999999999965
No 49
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=7.1e-21 Score=177.88 Aligned_cols=160 Identities=26% Similarity=0.366 Sum_probs=120.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.|+++|++|+|||||+|+|++.. ........+|+|.+..+.. .+..+.+|||||+ ..+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-------------e~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-------------EKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-------------HHHHHHHH
Confidence 68999999999999999999852 0111223567888875433 2467899999996 23445555
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC-CCCeEEeeC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSL-VQPVMMVSS 247 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~vi~vSa 247 (269)
.....+|++++|+|+..+...+..+.+..+...++| +++|+||+|+.+..........+.+.+...... ..|++++||
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA 148 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSA 148 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeC
Confidence 666679999999999988777777777778778888 999999999987655444444555544433211 578999999
Q ss_pred CCCCCHHHHHHHHHHhhhh
Q 024325 248 KSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~~ 266 (269)
++|+|+++++++|...+..
T Consensus 149 ~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 149 KTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCchhHHHHHHHHHHh
Confidence 9999999999999877654
No 50
>PRK09866 hypothetical protein; Provisional
Probab=99.87 E-value=1.9e-20 Score=171.16 Aligned_cols=117 Identities=19% Similarity=0.113 Sum_probs=81.8
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--CcEEEEEecCCCC
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDTV 216 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p~iiv~NK~Dl~ 216 (269)
.++|+||||+..+.... . ..++.. .+..+|+|+||+|+.......+..+++.+...+ .|+++|+||+|+.
T Consensus 231 QIIFVDTPGIhk~~~~~-L----~k~M~e---qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPH-L----QKMLNQ---QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CEEEEECCCCCCccchH-H----HHHHHH---HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 38999999997642210 1 111222 344599999999998777888888999888877 4999999999997
Q ss_pred CchH--HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 217 FPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 217 ~~~~--~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
+..+ .+.....+...+.........+++|||++|.|++.|++.|...
T Consensus 303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 5322 3333333333332222224579999999999999999999873
No 51
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=1.4e-21 Score=155.94 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=102.5
Q ss_pred EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---Ee-CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
++|++|||||||+|+|++. .. .+++++++|.+.... .. +..+.+|||||+....... ..+...+....
T Consensus 1 iiG~~~~GKStll~~l~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA-KP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC-Cc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHH
Confidence 5899999999999999998 33 678888888776432 23 6789999999985421111 11112233334
Q ss_pred cccceEEEEEeCCCCC-----Ccc-h-HHHHHHHH----------hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325 173 VSLKRVCLLIDTKWGV-----KPR-D-HELISLME----------RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~-----~~~-~-~~~~~~l~----------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 235 (269)
..+|++++|+|+.... ... + ..+...+. ..++|+++|+||+|+.......... ... ..
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--~~~---~~ 147 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL--VRE---LA 147 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH--HHH---Hh
Confidence 4499999999997542 111 1 11222222 1368999999999998765443321 111 11
Q ss_pred CCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 236 NSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
.....+++++||++|.|+++++++|...
T Consensus 148 ~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 1235679999999999999999998764
No 52
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.87 E-value=5.7e-21 Score=152.66 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|++|+|||||+++|.+. ......+..|..... +...+..+.+|||||... +..+...++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~l~D~~G~~~----------~~~~~~~~~- 79 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT-LEYEGYKLNIWDVGGQKT----------LRPYWRNYF- 79 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE-EEECCEEEEEEECCCCHH----------HHHHHHHHh-
Confidence 3468999999999999999999987 333333333322211 112356789999999621 122223333
Q ss_pred cccccceEEEEEeCCCCCCcc--hHHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh--cCCCCCCeE
Q 024325 171 TRVSLKRVCLLIDTKWGVKPR--DHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVM 243 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~vi 243 (269)
..+|++++|+|+....... ...+...+. ..+.|+++|+||+|+........ +.+.+.. ......+++
T Consensus 80 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~ 153 (173)
T cd04154 80 --ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEE----IREALELDKISSHHWRIQ 153 (173)
T ss_pred --CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHH----HHHHhCccccCCCceEEE
Confidence 3499999999987542111 112222222 24689999999999976432222 2222211 112346899
Q ss_pred EeeCCCCCCHHHHHHHHHH
Q 024325 244 MVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~ 262 (269)
++||++|.|+++++++|.+
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999999864
No 53
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=7.1e-21 Score=152.66 Aligned_cols=154 Identities=22% Similarity=0.224 Sum_probs=99.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCcc----c---------cCCCCCceeEee---EE-----EeCCcEEEEcCCCCCCcc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVV----R---------TSDKPGLTQTIN---FF-----KLGTKLCLVDLPGYGFAY 152 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~----~---------~s~~~gtt~~~~---~~-----~~~~~~~lvDtpG~~~~~ 152 (269)
+|+++|.+|+|||||+++|++..... . .....|+|.... .. ..+..+.+|||||+...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 69999999999999999998742100 0 011223443321 11 12445789999997431
Q ss_pred hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHH
Q 024325 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 232 (269)
..+...++. .+|++++|+|+..+....+...+..+...++|+++|+||+|+.... .....+.+.+.+
T Consensus 81 ---------~~~~~~~~~---~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~ 147 (179)
T cd01890 81 ---------SYEVSRSLA---ACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD-PERVKQQIEDVL 147 (179)
T ss_pred ---------HHHHHHHHH---hcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC-HHHHHHHHHHHh
Confidence 222223333 3999999999987665555555455555689999999999986432 222223333322
Q ss_pred HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
. ....+++++||++|+|+++|+++|.+.+
T Consensus 148 ~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 148 G---LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred C---CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 1 1123589999999999999999998765
No 54
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=3.6e-21 Score=158.45 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccC------------------------------CCCCceeEeeEE---EeCCcE
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS------------------------------DKPGLTQTINFF---KLGTKL 140 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s------------------------------~~~gtt~~~~~~---~~~~~~ 140 (269)
+|+++|++|+|||||+++|+.... ...+ ..+|+|.+.... ..+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSK-SIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 489999999999999999986532 1111 126677776432 346789
Q ss_pred EEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCCCCch
Q 024325 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPI 219 (269)
Q Consensus 141 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~ 219 (269)
.++||||+. .+..........+|++++|+|+..+....+......+...+. ++++|+||+|+....
T Consensus 80 ~liDTpG~~-------------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~ 146 (208)
T cd04166 80 IIADTPGHE-------------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS 146 (208)
T ss_pred EEEECCcHH-------------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC
Confidence 999999962 112222333455999999999988776666666666666664 477899999997532
Q ss_pred H--HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325 220 D--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 220 ~--~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L 256 (269)
. .......+...+........+++++||++|.|+++.
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 147 EEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2 233344444444443322356999999999999754
No 55
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=1.7e-20 Score=175.84 Aligned_cols=159 Identities=23% Similarity=0.363 Sum_probs=121.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.|+++|++++|||||+++|++.. .........|.|.+..+... +..+.+|||||+ ..+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-------------e~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-------------EKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-------------HHHHHHH
Confidence 58999999999999999999852 11222344688888765432 456899999996 2344555
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
......+|++++|+|+..++.+++.+.+..+...++| +++|+||+|+.+..........+.+.+........|++++||
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA 148 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAA 148 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeC
Confidence 5666679999999999998888888888888887887 579999999987655555556666555443222478999999
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024325 248 KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~ 265 (269)
++|+|+++|++.|.....
T Consensus 149 ~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 149 TEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCCCCCHHHHHHHHHhhc
Confidence 999999999999987654
No 56
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=1.2e-20 Score=180.57 Aligned_cols=158 Identities=21% Similarity=0.241 Sum_probs=114.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcch---hHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~ 166 (269)
++|+++|+||+|||||+|+|++.. ..+++.||+|.+... ...+..+.++||||+.+-.. ..... +....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIAC 78 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHHH
Confidence 579999999999999999999984 578999999988643 23466899999999864211 01111 11223
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
.|+. ...+|++++|+|+++. .....+...+.+.++|+++|+||+|+..........+.+.+.+ +.|++++|
T Consensus 79 ~~l~-~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L------G~pVvpiS 149 (772)
T PRK09554 79 HYIL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL------GCPVIPLV 149 (772)
T ss_pred HHHh-ccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh------CCCEEEEE
Confidence 3332 2348999999999752 3344566677778999999999999875444333333333322 57999999
Q ss_pred CCCCCCHHHHHHHHHHhh
Q 024325 247 SKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~ 264 (269)
|++|+|++++.+.|.+..
T Consensus 150 A~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQ 167 (772)
T ss_pred eecCCCHHHHHHHHHHhh
Confidence 999999999999997764
No 57
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.86 E-value=9.7e-21 Score=148.91 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||+|++++.. +...+.+|+.+... ... ...+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHHHH
Confidence 479999999999999999999872 23344444433211 111 23477899999632 2334444
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
|+.. ++.+++|+|........+ ..++..+. ..+.|+++|+||+|+............+. .. ...++
T Consensus 69 ~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~---~~~~~ 139 (162)
T cd04138 69 YMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA---KS---YGIPY 139 (162)
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH---HH---hCCeE
Confidence 4443 899999998864322111 12222222 23689999999999976322222122221 11 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++||++|.|+++++++|.+.+
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 140 IETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998654
No 58
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.86 E-value=7.6e-21 Score=158.38 Aligned_cols=174 Identities=22% Similarity=0.245 Sum_probs=122.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
....|+++|.||+|||||.|.+.|. .++.++..+.||+.-. +......++|+||||+...... ........+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhhC
Confidence 3468999999999999999999999 8899999999988754 3334678999999998764211 111111233345
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh-CCcEEEEEecCCCCCchHH-------------HHHHHHHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPIDV-------------ARRAMQIEESLK 233 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-~~p~iiv~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 233 (269)
+......+|.+++|+|++..-......++..+... .+|-++|+||+|......+ ....-.+++.+.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 55666679999999999864445556777777664 6899999999999864322 110111112111
Q ss_pred hcC-----------CCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 234 ANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 234 ~~~-----------~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
... ..+..+|++||++|+||++|.++|...+.+
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 111 113348999999999999999999987754
No 59
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.86 E-value=1.1e-20 Score=150.41 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=94.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
.++|+++|.+|+|||||+++|... ... ...|.+..+.. ....+..+.+|||||... +..+...++.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~-~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~ 75 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLG-QSV--TTIPTVGFNVETVTYKNVKFNVWDVGGQDK----------IRPLWRHYYT 75 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccC-CCc--cccCCcccceEEEEECCEEEEEEECCCCHH----------HHHHHHHHhc
Confidence 468999999999999999999875 222 22232222222 222356799999999721 1222233333
Q ss_pred cccccceEEEEEeCCCCCCc--chHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~--~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
.+|++++|+|++..... ....+.+.+.. .+.|+++|+||+|+.......+..+.+. +........+++++
T Consensus 76 ---~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~ 150 (168)
T cd04149 76 ---GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLG--LTRIRDRNWYVQPS 150 (168)
T ss_pred ---cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcC--CCccCCCcEEEEEe
Confidence 39999999998753221 12223333332 3589999999999875322222221111 00111123468999
Q ss_pred eCCCCCCHHHHHHHHHH
Q 024325 246 SSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~ 262 (269)
||++|.|+++++++|.+
T Consensus 151 SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 151 CATSGDGLYEGLTWLSS 167 (168)
T ss_pred eCCCCCChHHHHHHHhc
Confidence 99999999999999864
No 60
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=6.9e-21 Score=149.88 Aligned_cols=153 Identities=17% Similarity=0.206 Sum_probs=92.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
+|+++|.+|+|||||+|++.+. ......+..+.+...........+.+|||||... . ..+...++ .
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~------~----~~~~~~~~---~ 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA-ELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK------M----RTVWKCYL---E 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC-CcccccCccCcceEEEEeCCceEEEEEECCCCHh------H----HHHHHHHh---c
Confidence 4899999999999999999987 3322223223222211222245799999999632 1 11222222 3
Q ss_pred ccceEEEEEeCCCCCC--cchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-CCCCCCeEEeeC
Q 024325 174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVMMVSS 247 (269)
Q Consensus 174 ~~d~vl~vid~~~~~~--~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~vSa 247 (269)
.+|++++|+|+++... .....+...+.. .+.|+++|+||+|+............+. .... .....+++++||
T Consensus 67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~Sa 144 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK--LKKYCSDRDWYVQPCSA 144 (160)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC--CcccCCCCcEEEEeccc
Confidence 4899999999975431 111223333322 4689999999999965322222221111 0111 112346899999
Q ss_pred CCCCCHHHHHHHHHH
Q 024325 248 KSGAGIRSLRTVLSK 262 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~ 262 (269)
++|+|+++++++|..
T Consensus 145 ~~~~gv~~~~~~i~~ 159 (160)
T cd04156 145 VTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCChHHHHHHHhc
Confidence 999999999999854
No 61
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=2.4e-20 Score=146.96 Aligned_cols=145 Identities=21% Similarity=0.298 Sum_probs=95.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
+|+++|++|+|||||+|+|.+... .. ..|..+.+... .+|||||+..... . +.........
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~~~~----~~iDtpG~~~~~~-~--------~~~~~~~~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEFNDK----GDIDTPGEYFSHP-R--------WYHALITTLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEECCC----CcccCCccccCCH-H--------HHHHHHHHHh
Confidence 699999999999999999998731 11 13334333222 2699999854321 1 1112222244
Q ss_pred ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 253 (269)
Q Consensus 174 ~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi 253 (269)
.+|++++|+|+..+.......+... ..+.|+++++||+|+... +... +.+.+... ....|++++||++|+|+
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~-~~~~----~~~~~~~~-~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA-DVAA----TRKLLLET-GFEEPIFELNSHDPQSV 135 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc-cHHH----HHHHHHHc-CCCCCEEEEECCCccCH
Confidence 5999999999986544444333332 236799999999998643 2222 22222222 22369999999999999
Q ss_pred HHHHHHHHHhhh
Q 024325 254 RSLRTVLSKIAR 265 (269)
Q Consensus 254 ~~L~~~i~~~~~ 265 (269)
++|++.|.+.+.
T Consensus 136 ~~l~~~l~~~~~ 147 (158)
T PRK15467 136 QQLVDYLASLTK 147 (158)
T ss_pred HHHHHHHHHhch
Confidence 999999988764
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.86 E-value=2.2e-20 Score=147.47 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++++. ..++.+++++.+... ... ...+.+|||||... +..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 69 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS---YFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----------FSAMREQ 69 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC---CCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc----------hhHHHHH
Confidence 58999999999999999999986 234555555543221 111 23578999999632 1233344
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
++.. +|.+++|+|++...+... ..++..+.. .+.|+++|+||+|+........ +...+.... ...++
T Consensus 70 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 141 (164)
T cd04145 70 YMRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR--EEGQELARK---LKIPY 141 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH--HHHHHHHHH---cCCcE
Confidence 4433 899999999875322111 122222222 3689999999999975432111 111222222 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.++
T Consensus 142 ~~~Sa~~~~~i~~l~~~l~~~~~ 164 (164)
T cd04145 142 IETSAKDRLNVDKAFHDLVRVIR 164 (164)
T ss_pred EEeeCCCCCCHHHHHHHHHHhhC
Confidence 99999999999999999987653
No 63
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=173.12 Aligned_cols=156 Identities=22% Similarity=0.313 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCc--chhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA--YAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~--~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|+||+|||||+|+|+|.+ ..++|.||+|.+... ...+..+.++|+||.++- .+.| +...++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------E~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------EKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------HHHHHH
Confidence 469999999999999999999985 789999999988753 344777999999998652 2222 233445
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
|+.. ...|+++.|+|+++ -+....+.-++.+.++|+++++|++|........-..+.+.+.+ +.|++++||
T Consensus 76 ~ll~-~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L------GvPVv~tvA 146 (653)
T COG0370 76 FLLE-GKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLL------GVPVVPTVA 146 (653)
T ss_pred HHhc-CCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHh------CCCEEEEEe
Confidence 5442 34899999999974 33445666667778999999999999875543333334444433 699999999
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024325 248 KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~ 265 (269)
++|+|+++|++.|.+..+
T Consensus 147 ~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 147 KRGEGLEELKRAIIELAE 164 (653)
T ss_pred ecCCCHHHHHHHHHHhcc
Confidence 999999999999987554
No 64
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=2e-20 Score=147.45 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=94.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
+|+++|.+|+|||||+++|++.. ......+..|++... +...+..+.+|||||... +..+...++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~--- 66 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK----------YRGLWEHYY--- 66 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh----------hHHHHHHHH---
Confidence 48999999999999999999862 112233334433222 223456789999999632 122223333
Q ss_pred cccceEEEEEeCCCCCCcch-HHHHHHH-H-----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 173 VSLKRVCLLIDTKWGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~-~~~~~~l-~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
..+|++++|+|++....... ...+..+ . ..++|+++|+||+|+............+. +........+++++
T Consensus 67 ~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~--~~~~~~~~~~~~~~ 144 (162)
T cd04157 67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG--LENIKDKPWHIFAS 144 (162)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC--CccccCceEEEEEe
Confidence 34999999999975432111 1222222 2 23689999999999976432222111111 00101112358999
Q ss_pred eCCCCCCHHHHHHHHHH
Q 024325 246 SSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~ 262 (269)
||++|.|+++++++|.+
T Consensus 145 Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 145 NALTGEGLDEGVQWLQA 161 (162)
T ss_pred eCCCCCchHHHHHHHhc
Confidence 99999999999999865
No 65
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=5.8e-20 Score=143.11 Aligned_cols=159 Identities=28% Similarity=0.289 Sum_probs=110.0
Q ss_pred EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
++|++|+|||||+|+|++. .....+..+++|.+...... +..+.+|||||+......... +......+ .
T Consensus 1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~---~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRV---L 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHH---H
Confidence 5899999999999999987 44556777777766543322 568999999998764322110 01111222 2
Q ss_pred cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g 252 (269)
..+|.+++|+|+..........+.......+.|+++|+||+|+..+........... .........+++++||+++.|
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRL--LILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHH--hhcccccCCceEEEeeeccCC
Confidence 238999999999876655555545566667899999999999997655443321111 111223467899999999999
Q ss_pred HHHHHHHHHHhh
Q 024325 253 IRSLRTVLSKIA 264 (269)
Q Consensus 253 i~~L~~~i~~~~ 264 (269)
+++++++|.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (163)
T cd00880 152 IDELREALIEAL 163 (163)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 66
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=2.4e-20 Score=146.71 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=92.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
+|+++|++|+|||||+++|.... .. ...|.+..+. .+...+..+.+|||||... +..+...++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~-~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~--- 64 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE-VV--TTIPTIGFNVETVTYKNLKFQVWDLGGQTS----------IRPYWRCYY--- 64 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC-Cc--CcCCccCcCeEEEEECCEEEEEEECCCCHH----------HHHHHHHHh---
Confidence 48999999999999999997762 22 2222111121 1222356789999999732 112222333
Q ss_pred cccceEEEEEeCCCCCCc--chHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 173 VSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~--~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
..+|++++|+|++..... ....+...+.. .+.|+++|+||+|+..+....+....+. .........+++++||
T Consensus 65 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 65 SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLG--LSELKDRTWSIFKTSA 142 (158)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhC--ccccCCCcEEEEEeec
Confidence 349999999998753211 12233333332 3689999999999975432222212111 0011112347999999
Q ss_pred CCCCCHHHHHHHHHH
Q 024325 248 KSGAGIRSLRTVLSK 262 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~ 262 (269)
++|.|+++++++|.+
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999999865
No 67
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=157.63 Aligned_cols=157 Identities=21% Similarity=0.224 Sum_probs=112.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...|.++|.||||||||+|+|+... ..+.++++||......+. ...+.+.|.||+....+.+ ..+--.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~ 267 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGYK 267 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccHH
Confidence 3579999999999999999999984 589999999988754332 3349999999998764433 234456
Q ss_pred HHhcccccceEEEEEeCCCCCCcchH----HHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 238 (269)
|+++.+-++.++||+|.+........ .+...++. .+.|.++|+||+|+.+.+ ......+.+.++
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq----- 340 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQ----- 340 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcC-----
Confidence 67777779999999999865222222 22233322 367999999999986332 122233333332
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
...|+++||++++|+.+|++.|.+.
T Consensus 341 ~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 341 NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CCcEEEeeeccccchHHHHHHHhhc
Confidence 2359999999999999999988764
No 68
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=1.3e-19 Score=143.19 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--e---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--N---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++++.. .. ....+....+. . .......+.+|||||.. .+..+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 68 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-YE-PQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHAS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CC-CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHH
Confidence 379999999999999999998762 11 11111111111 1 11123457899999962 22334444
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
++. .+|++++|+|++.+.+..+ ..++..+... +.|+++|+||+|+.... ... ....... ...++++
T Consensus 69 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~--~~~---~~~~~~~---~~~~~~~ 137 (161)
T cd04124 69 YYH---KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV--TQK---KFNFAEK---HNLPLYY 137 (161)
T ss_pred HhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH--HHH---HHHHHHH---cCCeEEE
Confidence 443 4899999999875433222 2445555443 68999999999985321 111 1111111 2468999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
+||++|.|++++++.+.+.+...
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 138 VSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999998876543
No 69
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.85 E-value=3.4e-20 Score=148.40 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=95.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
..+|+++|++|+|||||+++++... .....+..+.+.. .+...+..+.+|||||... . ......++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~~------~----~~~~~~~~-- 80 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVE-EIVYKNIRFLMWDIGGQES------L----RSSWNTYY-- 80 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccceE-EEEECCeEEEEEECCCCHH------H----HHHHHHHh--
Confidence 3589999999999999999998762 2223333222221 2222366799999999621 1 11222222
Q ss_pred ccccceEEEEEeCCCCCCcc--hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 172 RVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
..+|++++|+|++...... ...+...+.. .+.|+++|+||+|+.......+..+.+. .........+++++|
T Consensus 81 -~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~--~~~~~~~~~~~~~~S 157 (174)
T cd04153 81 -TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLG--LTSIRDHTWHIQGCC 157 (174)
T ss_pred -hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhC--cccccCCceEEEecc
Confidence 3499999999987542211 1223333322 3589999999999875332222222211 001112235789999
Q ss_pred CCCCCCHHHHHHHHHH
Q 024325 247 SKSGAGIRSLRTVLSK 262 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~ 262 (269)
|++|+|+++++++|.+
T Consensus 158 A~~g~gi~e~~~~l~~ 173 (174)
T cd04153 158 ALTGEGLPEGLDWIAS 173 (174)
T ss_pred cCCCCCHHHHHHHHhc
Confidence 9999999999999864
No 70
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.85 E-value=3.2e-20 Score=146.40 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|||||||++++++.. +...+++|+.+.. .... ...+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------cchHHHH
Confidence 479999999999999999999762 3344444543321 1111 23577899999632 1223333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
|+. .+|++++|+|.+...+..+ ..++..+.. .+.|+++|+||+|+........ ......... ...++
T Consensus 69 ~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 140 (163)
T cd04136 69 YIK---NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR--EEGQALARQ---WGCPF 140 (163)
T ss_pred Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH--HHHHHHHHH---cCCeE
Confidence 333 3899999999875322221 223333332 3589999999999875322211 111111111 13689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++||++|.|+++++++|.+.+
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 141 YETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEecCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998754
No 71
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.85 E-value=2.6e-20 Score=148.52 Aligned_cols=155 Identities=19% Similarity=0.240 Sum_probs=96.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|++|||||||+++|.+. ......+..|.+... ....+..+.+|||||... .......+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~-~~~~~~~t~g~~~~~-i~~~~~~~~~~D~~G~~~----------~~~~~~~~-- 78 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE-DISHITPTQGFNIKT-VQSDGFKLNVWDIGGQRA----------IRPYWRNY-- 78 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC-CCcccCCCCCcceEE-EEECCEEEEEEECCCCHH----------HHHHHHHH--
Confidence 3578999999999999999999987 333333444433222 122366789999999621 11122222
Q ss_pred cccccceEEEEEeCCCCCCcc--hHHHHHHH---HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPR--DHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~--~~~~~~~l---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
...+|++++|+|+....... ...+...+ ...++|+++++||+|+..........+.+. +........+++++
T Consensus 79 -~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~ 155 (173)
T cd04155 79 -FENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN--LHDLRDRTWHIQAC 155 (173)
T ss_pred -hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC--CcccCCCeEEEEEe
Confidence 23489999999987421111 11222222 224689999999999976543333222211 11111112357899
Q ss_pred eCCCCCCHHHHHHHHHH
Q 024325 246 SSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~ 262 (269)
||++|+|++++++||.+
T Consensus 156 Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 156 SAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999975
No 72
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.85 E-value=2.4e-20 Score=147.56 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||+++++.. .....+++|+.+.. +... ...+.+|||||... +..+...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG---IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC---CCCcccCCcchheEEEEEEECCEEEEEEEEECCCccc----------chhHHHH
Confidence 47999999999999999999865 23444555554321 1111 33567999999632 2233333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~ 241 (269)
++.. +|++++|+|.+...+... ..++..+. ..+.|+++|+||+|+........ ....+.+ . ...+
T Consensus 69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~ 139 (164)
T cd04175 69 YMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR---Q---WGCA 139 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH---H---hCCE
Confidence 4333 899999999864322221 12333332 23589999999999975322111 1112211 1 1368
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++.+|.+.+.
T Consensus 140 ~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 140 FLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987664
No 73
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.85 E-value=3.8e-20 Score=142.97 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=89.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
+|+++|.+|+|||||+|+|++.. .. ++ .|..+.+. -.+|||||.... ....+..+. ....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-~~----~~-~t~~~~~~-----~~~iDt~G~~~~-----~~~~~~~~~----~~~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-IL----YK-KTQAVEYN-----DGAIDTPGEYVE-----NRRLYSALI----VTAA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-cc----cc-cceeEEEc-----CeeecCchhhhh-----hHHHHHHHH----HHhh
Confidence 69999999999999999999873 21 11 12222221 168999996210 111122222 2244
Q ss_pred ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 253 (269)
Q Consensus 174 ~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi 253 (269)
.+|++++|+|+..+.+..+..+.+. ...|+++|+||+|+.+.....+ ...+..... ...+++++||++|.|+
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~---~~~~~~~~~--~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIE---RAKELLETA--GAEPIFEISSVDEQGL 133 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHH---HHHHHHHHc--CCCcEEEEecCCCCCH
Confidence 5999999999987665554444433 2459999999999975322111 112222221 1247999999999999
Q ss_pred HHHHHHHH
Q 024325 254 RSLRTVLS 261 (269)
Q Consensus 254 ~~L~~~i~ 261 (269)
++++++|.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 74
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=7.6e-20 Score=170.15 Aligned_cols=157 Identities=22% Similarity=0.331 Sum_probs=105.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-ceeEeeEEEe---------------------CCcEEEEcCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL---------------------GTKLCLVDLPGYG 149 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-tt~~~~~~~~---------------------~~~~~lvDtpG~~ 149 (269)
.|.|+++|++|+|||||+|+|++. . .....+| +|++...... ...+.+|||||+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~-~--v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGS-A--VAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc-c--cccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 589999999999999999999987 2 2333333 5554321110 0238899999962
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH---------
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------- 220 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--------- 220 (269)
. +..+...+ ...+|++++|+|+..+...++.+.+..+...++|+++|+||+|+.+...
T Consensus 81 ~----------f~~l~~~~---~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 81 A----------FTNLRKRG---GALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred h----------HHHHHHHH---HhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHH
Confidence 1 22222222 2349999999999988888888888888888999999999999974210
Q ss_pred -----HHHHHHH-------HHHHHHhc------------CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 221 -----VARRAMQ-------IEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 221 -----~~~~~~~-------~~~~~~~~------------~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
....... +...+... .....+++++||++|+|+++|+++|....
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0000001 01111111 12247899999999999999999986543
No 75
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.85 E-value=7.7e-20 Score=143.96 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=97.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||+|++++.. . ..+..++++.+... ... + ..+.+|||||... +..+...+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~ 69 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-F-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPSY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-C-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 69999999999999999999873 2 33455666655422 111 2 3588999999521 22333344
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHH-hh--CCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RS--QTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~-~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+. .+|++++|+|.+.+.+..+ ..++..+. .. +.|+++|+||+|+...... ......+. .. ...+++
T Consensus 70 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~---~~---~~~~~~ 140 (161)
T cd01861 70 IR---DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA---KE---LNAMFI 140 (161)
T ss_pred hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHH---HH---hCCEEE
Confidence 33 3899999999875322222 23333332 23 3899999999999643221 11111111 11 147799
Q ss_pred EeeCCCCCCHHHHHHHHHHh
Q 024325 244 MVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~ 263 (269)
++||++|.|+++++++|.+.
T Consensus 141 ~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 141 ETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999875
No 76
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.85 E-value=5.4e-20 Score=145.12 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=91.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
+|+++|.+|+|||||++++... .. .+..|.+..+.. .......+.+|||||... +..+...|+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~-~~--~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~-- 66 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG-EI--VTTIPTIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 66 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CC--cccCCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHhc--
Confidence 6999999999999999999655 22 222222222221 222356789999999732 1222233333
Q ss_pred cccceEEEEEeCCCCCC--cchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 173 VSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~--~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
.+|++++|+|++.... .....+...+.. ...|+++|+||+|+.......+....+. +.........++++||
T Consensus 67 -~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~Sa 143 (159)
T cd04150 67 -NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG--LHSLRNRNWYIQATCA 143 (159)
T ss_pred -CCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhC--ccccCCCCEEEEEeeC
Confidence 3999999999875321 111223333322 2589999999999965422222222110 1111122345789999
Q ss_pred CCCCCHHHHHHHHHH
Q 024325 248 KSGAGIRSLRTVLSK 262 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~ 262 (269)
++|.|+++++++|.+
T Consensus 144 k~g~gv~~~~~~l~~ 158 (159)
T cd04150 144 TSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999864
No 77
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=151.87 Aligned_cols=175 Identities=25% Similarity=0.305 Sum_probs=121.5
Q ss_pred hhHHHhh-hccCCCCC--CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCC
Q 024325 75 LEFFAAA-KVSSSFPA--PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGY 148 (269)
Q Consensus 75 ~~~~~~~-~~~~~~~~--~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~ 148 (269)
++++... ...+.+|. .+.|.|++.|+||+|||||++.+++.. ..+.+||+||..++..+. ...++++||||+
T Consensus 148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcc
Confidence 3444333 34566665 478999999999999999999999984 679999999999865443 458999999999
Q ss_pred CCcchh--HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC--Ccc-hHHHHHHHHh-hCCcEEEEEecCCCCCchHHH
Q 024325 149 GFAYAK--EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPR-DHELISLMER-SQTKYQVVLTKTDTVFPIDVA 222 (269)
Q Consensus 149 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~--~~~-~~~~~~~l~~-~~~p~iiv~NK~Dl~~~~~~~ 222 (269)
-+.... +.++. . ...+-....++|+|++|++... +-. ...+++.+.. ...|+++|+||+|..+.+..+
T Consensus 226 LDRPl~ErN~IE~--q----Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~ 299 (346)
T COG1084 226 LDRPLEERNEIER--Q----AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLE 299 (346)
T ss_pred cCCChHHhcHHHH--H----HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHH
Confidence 764222 22211 1 1111112268899999998533 222 2455555554 457999999999999877766
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 223 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
+....+... .......+|+..+.+++.+.+.+...
T Consensus 300 ~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 300 EIEASVLEE------GGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HHHHHHHhh------ccccccceeeeehhhHHHHHHHHHHH
Confidence 655443322 12335789999999999998887765
No 78
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=4.9e-20 Score=174.20 Aligned_cols=159 Identities=21% Similarity=0.327 Sum_probs=112.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-------eCCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-------~~~~~~lvDtpG~~~~~~~~~~~~~~~ 162 (269)
...|.|+++|++|+|||||+++|.+.. ...+..+|+|.++..+. .+..+.||||||+. .+.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AFS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc--CccccCCccccccceEEEEEEecCCceEEEEEECCcHH----------HHH
Confidence 356899999999999999999999863 22344566776643221 24679999999962 222
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCC
Q 024325 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQ 240 (269)
Q Consensus 163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~ 240 (269)
.+...+ ...+|++++|+|+..+...+..+.+..+...++|+++|+||+|+.... .....+.+... +........
T Consensus 310 ~mr~rg---~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~v 385 (742)
T CHL00189 310 SMRSRG---ANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDT 385 (742)
T ss_pred HHHHHH---HHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCc
Confidence 333222 234999999999998888887788888888899999999999997532 22222222211 111112246
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
|++++||++|.|+++|+++|....
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhhh
Confidence 899999999999999999997654
No 79
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.84 E-value=8.5e-20 Score=170.10 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=110.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CC-cEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~-~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..|.|+++|++|+|||||+++|.+. .+ .....+|+|.+...+.. +. .+.||||||+.. +..+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~-~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~----------F~~~r- 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKT-KV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA----------FTSMR- 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhC-Cc-ccccCCceeecceEEEEEECCCcEEEEEECCCCcc----------hhhHH-
Confidence 4589999999999999999999987 33 33455778887653322 33 799999999732 11222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCCCeEE
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMM 244 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~vi~ 244 (269)
.+....+|++++|+|+.++..++..+.+..+...++|+++++||+|+.... .....+.+... .........++++
T Consensus 153 --~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~ 229 (587)
T TIGR00487 153 --ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVP 229 (587)
T ss_pred --HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEE
Confidence 233445999999999998887887777877777889999999999996432 22222222211 1111112357999
Q ss_pred eeCCCCCCHHHHHHHHHH
Q 024325 245 VSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~ 262 (269)
+||++|+|+++|+++|..
T Consensus 230 iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 230 VSALTGDGIDELLDMILL 247 (587)
T ss_pred EECCCCCChHHHHHhhhh
Confidence 999999999999999864
No 80
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=1.9e-19 Score=149.49 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=87.8
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~D 214 (269)
+..+.++||||.. .+.......+. .+|.+++|+|+..+....+.+++.++...++|+++|+||+|
T Consensus 83 ~~~i~liDtpG~~-------------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D 149 (224)
T cd04165 83 SKLVTFIDLAGHE-------------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID 149 (224)
T ss_pred CcEEEEEECCCcH-------------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 5679999999972 22222333332 48999999999988888899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHh-----------------------cCCCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325 215 TVFPIDVARRAMQIEESLKA-----------------------NNSLVQPVMMVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~vi~vSa~~g~gi~~L~~~i~~ 262 (269)
+.+..........+.+.+.. ......|+|++||.+|+|+++|...|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 98776666666666665541 1122459999999999999999998864
No 81
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.84 E-value=8.1e-20 Score=146.40 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=95.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
.++|+++|.+|+|||||++++... .. ....|.+..+.. ....+..+.+|||||... +..+...|+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 79 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLG-ES--VTTIPTIGFNVETVTYKNISFTVWDVGGQDK----------IRPLWRHYYT 79 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-CC--CCcCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHHhC
Confidence 468999999999999999999754 21 222232222222 112356789999999632 1223333333
Q ss_pred cccccceEEEEEeCCCCCCc--chHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~--~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
.+|++++|+|++..... ....+...+.. .+.|+++|+||+|+.......+....+. +.........++++
T Consensus 80 ---~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~ 154 (175)
T smart00177 80 ---NTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLG--LHSIRDRNWYIQPT 154 (175)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhC--ccccCCCcEEEEEe
Confidence 39999999998753211 11222222222 2579999999999975432222222111 11111122346789
Q ss_pred eCCCCCCHHHHHHHHHHhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~ 265 (269)
||++|+|++++++||.+.+.
T Consensus 155 Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 155 CATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred eCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999987653
No 82
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.84 E-value=3.8e-21 Score=161.26 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=145.4
Q ss_pred chhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhh-h--hhchhhhHHHhhh-
Q 024325 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEE-N--IFRNKLEFFAAAK- 82 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~-~--~~~~~~~~~~~~~- 82 (269)
+.+......+|+-.+..+|..+|+..-+.++.... .+. +-++++. ..+.+.+++.+ + .++..++.+...+
T Consensus 95 q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~--g~~-v~gsges---~id~d~~rllr~kea~lrKeL~~vrrkr~ 168 (410)
T KOG0410|consen 95 QEAVTAEARLQVALAEMPYVGGRLERELQHLRRQS--GGQ-VKGSGES---IIDRDIRRLLRIKEAQLRKELQRVRRKRQ 168 (410)
T ss_pred HHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcC--CCc-ccCccch---HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555688889999999999955444433333 222 3444432 22222222222 1 1222222222222
Q ss_pred ccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee----EEEeCCcEEEEcCCCCCCcchhHHHH
Q 024325 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVK 158 (269)
Q Consensus 83 ~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~----~~~~~~~~~lvDtpG~~~~~~~~~~~ 158 (269)
.+.++.....|.|++||++|||||||+++|++. . ....+.-+.|.|.. ....|..+.+.||-||..
T Consensus 169 ~r~gr~~~s~pviavVGYTNaGKsTLikaLT~A-a-l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis-------- 238 (410)
T KOG0410|consen 169 RRVGREGESSPVIAVVGYTNAGKSTLIKALTKA-A-LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS-------- 238 (410)
T ss_pred hhhccccCCCceEEEEeecCccHHHHHHHHHhh-h-cCccchhheeccchhhhccCCCCcEEEEeechhhhh--------
Confidence 235555677899999999999999999999965 2 33444445555543 223477899999999954
Q ss_pred HHHHHHHHHHHhccc---ccceEEEEEeCCCCCCcch-HHHHHHHHhhCCc-------EEEEEecCCCCCchHHHHHHHH
Q 024325 159 DAWEELVKEYVSTRV---SLKRVCLLIDTKWGVKPRD-HELISLMERSQTK-------YQVVLTKTDTVFPIDVARRAMQ 227 (269)
Q Consensus 159 ~~~~~~~~~~~~~~~---~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p-------~iiv~NK~Dl~~~~~~~~~~~~ 227 (269)
+++..++..|.++++ .+|++++|+|.+++..... ..++..+.+.++| ++-|.||+|.-+..-..
T Consensus 239 dLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~----- 313 (410)
T KOG0410|consen 239 DLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE----- 313 (410)
T ss_pred hCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-----
Confidence 344556666666554 4899999999998655443 4567777776664 67899999976432110
Q ss_pred HHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 228 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 228 ~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.....+.+||++|.|++++++.+...+.
T Consensus 314 ----------E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 ----------EKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ----------ccCCccccccccCccHHHHHHHHHHHhh
Confidence 0122689999999999999999877653
No 83
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=1.2e-19 Score=147.71 Aligned_cols=149 Identities=24% Similarity=0.261 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCC---------------CCCceeEee---EEEeCCcEEEEcCCCCCCcchh
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~---------------~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
.+|+++|.+|+|||||+++|++... .+... ..|+|.+.. +...+..+.+|||||...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSG-TFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcC-CCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH----
Confidence 3799999999999999999986311 11111 134444332 223466789999999732
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 234 (269)
+......++. .+|.+++|+|+..+.......++..+...++|+++|+||+|+.... .......+.+.+..
T Consensus 78 ------~~~~~~~~~~---~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~ 147 (194)
T cd01891 78 ------FGGEVERVLS---MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIE 147 (194)
T ss_pred ------HHHHHHHHHH---hcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHH
Confidence 1222333333 3999999999987654555555666666789999999999997532 22223333333322
Q ss_pred c----CCCCCCeEEeeCCCCCCHHHH
Q 024325 235 N----NSLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 235 ~----~~~~~~vi~vSa~~g~gi~~L 256 (269)
. .....+++++||++|.|++++
T Consensus 148 ~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 148 LGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred hCCccccCccCEEEeehhcccccccc
Confidence 1 123578999999999877554
No 84
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=5.8e-20 Score=148.45 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=95.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
.++|+++|.+|||||||+|++.+. ....+.+..+.+.. .....+..+.++||||... +..+...|+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~-- 82 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKND-RLAQHQPTQHPTSE-ELAIGNIKFTTFDLGGHQQ----------ARRLWKDYF-- 82 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccccceE-EEEECCEEEEEEECCCCHH----------HHHHHHHHh--
Confidence 468999999999999999999987 33332222222211 1112356789999999732 112223333
Q ss_pred ccccceEEEEEeCCCCCC--cchHHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh-----cCCCCCC
Q 024325 172 RVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-----NNSLVQP 241 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~--~~~~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 241 (269)
..+|++++|+|++.... .....+.+.+. ..+.|+++|+||+|+.......+....+.-.... .......
T Consensus 83 -~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 83 -PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred -CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence 34999999999975311 11112222222 2468999999999986433333222222100000 0011345
Q ss_pred eEEeeCCCCCCHHHHHHHHHHh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
++++||++|+|++++++||...
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 8999999999999999999764
No 85
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.84 E-value=8.7e-20 Score=147.26 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.+|+++|.+|+|||||++++++.. . +...|....+. .... .+..+.+|||||... +..+..
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~ 70 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNE-F--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK----------LRPLWK 70 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-c--CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh----------HHHHHH
Confidence 589999999999999999998762 2 23333221111 1111 245689999999621 122222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HH----HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HE----LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~----~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.++ ..+|++++|+|++....... .. +.......++|+++|+||+|+..........+.+. ..........+
T Consensus 71 ~~~---~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~ 146 (183)
T cd04152 71 SYT---RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLA-LHELSASTPWH 146 (183)
T ss_pred HHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhC-ccccCCCCceE
Confidence 332 23999999999875321111 11 22222334689999999999864322222111110 00000111246
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|+|+++++++|.+.+.
T Consensus 147 ~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 147 VQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred EEEeecccCCCHHHHHHHHHHHHH
Confidence 889999999999999999987764
No 86
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.84 E-value=5.9e-20 Score=145.14 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=94.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||+|++++.. ....+.+|+.+.. ... ....+.+|||||.... ..+...+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~ 68 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH---FVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF----------SAMRDQY 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc---CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc----------hHHHHHH
Confidence 79999999999999999999862 2333334443321 111 1245779999996431 2222333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+. .+|.+++|+|+....+... ..+...+. ..+.|+++|+||+|+........ ......... ...+++
T Consensus 69 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~ 140 (164)
T smart00173 69 MR---TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST--EEGKELARQ---WGCPFL 140 (164)
T ss_pred Hh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH--HHHHHHHHH---cCCEEE
Confidence 33 3899999999875322111 12222222 23689999999999975322111 111111111 147899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 141 ~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 141 ETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EeecCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987764
No 87
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.84 E-value=4.3e-20 Score=147.09 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=93.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
+|+++|.+|+|||||++++.+. . .....|.+..+.. +...+..+.+|||||.... ..+...++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~-~--~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~----------~~~~~~~~--- 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD-E--FMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL----------RPLWKHYY--- 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC-C--CCCcCCcCceeEEEEEECCEEEEEEECCCChhc----------chHHHHHh---
Confidence 4899999999999999999987 2 2222222212222 2223567899999997421 11122222
Q ss_pred cccceEEEEEeCCCCC--CcchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 173 VSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~--~~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
..+|++++|+|.+... ......+...+.. .+.|+++|+||+|+..........+.+ ...........+++++||
T Consensus 65 ~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 65 LNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccccCCCcEEEEeCcC
Confidence 2389999999987532 1111222223322 247999999999997543322222211 100000011235788999
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024325 248 KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~ 265 (269)
++|.|+++++++|.+.+.
T Consensus 144 ~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 144 RSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987654
No 88
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=2.1e-19 Score=142.30 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccc-cCCCCCceeEeeEEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~-~s~~~gtt~~~~~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.++|+++|++|+|||||++++.+.. ... ..+..++......... + ..+.+|||||.. .+..+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 71 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT-FSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE----------RFRTITQS 71 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-CcccCCCccceEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 3689999999999999999998752 111 1111111112222222 2 468999999951 12233333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
++. .+|++++|+|++....... ..++..+.. .+.|+++|+||+|+....+.. ........... ...+++
T Consensus 72 ~~~---~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~ 144 (165)
T cd01864 72 YYR---SANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL--FEEACTLAEKN--GMLAVL 144 (165)
T ss_pred Hhc---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHHc--CCcEEE
Confidence 333 3899999999975432222 234444433 367999999999997543211 01111111211 124689
Q ss_pred EeeCCCCCCHHHHHHHHHHh
Q 024325 244 MVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~ 263 (269)
++||++|.|+++++++|.+.
T Consensus 145 e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 145 ETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 89
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=6.8e-20 Score=166.36 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=105.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccc------------------------cC------CCCCceeEeeEEE---eC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR------------------------TS------DKPGLTQTINFFK---LG 137 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------~s------~~~gtt~~~~~~~---~~ 137 (269)
...+|+++|++|+|||||+++|+.... .. +. ..+|+|.+..+.. .+
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g-~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETG-AIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcC-CcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 457899999999999999999985421 11 11 1578999986544 36
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC--CCCcchHHHHHHHHhhCC-cEEEEEecCC
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERSQT-KYQVVLTKTD 214 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~--~~~~~~~~~~~~l~~~~~-p~iiv~NK~D 214 (269)
..+.+|||||+.. +...+......+|++++|+|+.. +...++.+.+..+...+. |+++|+||+|
T Consensus 84 ~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~D 150 (425)
T PRK12317 84 YYFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMD 150 (425)
T ss_pred eEEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccc
Confidence 7899999999632 12223333455999999999987 666777777777766665 6899999999
Q ss_pred CCCch--HHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325 215 TVFPI--DVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 215 l~~~~--~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~ 255 (269)
+.... ......+.+.+.+..... ...+++++||++|+|+++
T Consensus 151 l~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 151 AVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 97522 223334445444433221 136799999999999987
No 90
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=1.3e-19 Score=143.82 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=96.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce----eEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt----~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
+|+++|.+|+|||||+|++.+.. . ...++.+. ....+......+.+|||||.... ......+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~- 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE-F--PENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD----------RANLAAE- 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc-C--CccCCCcccceEeeeeecCCeEEEEEEeCCCchhh----------hHHHhhh-
Confidence 69999999999999999998863 2 22333332 22222223456889999997431 1111122
Q ss_pred hcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
...+|++++|+|..++..... ..++..+.. .+.|+++|+||+|+.+..........+......+.. ..+++++
T Consensus 68 --~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~ 144 (166)
T cd01893 68 --IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-IETCVEC 144 (166)
T ss_pred --cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-ccEEEEe
Confidence 234999999999875433332 234444443 368999999999997654321111111111111111 2478999
Q ss_pred eCCCCCCHHHHHHHHHHhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~ 265 (269)
||++|.|++++++.+...+-
T Consensus 145 Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred ccccccCHHHHHHHHHHHhc
Confidence 99999999999999887653
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.84 E-value=1.5e-19 Score=142.53 Aligned_cols=150 Identities=14% Similarity=0.055 Sum_probs=95.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||++++++.. .+..+.+++.+... .. .+..+.+|||||... +..+...+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~ 68 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED----------YAAIRDNY 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC---CccccCCcchhhEEEEEEECCEEEEEEEEECCChhh----------hhHHHHHH
Confidence 79999999999999999999762 33444444433211 11 234689999999632 22333333
Q ss_pred HhcccccceEEEEEeCCCCCCc--chHHHHHHHHh---hCCcEEEEEecCCCCCch-HHHHHHHHHHHHHHhcCCCCCCe
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~--~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
++ .++.+++++|...+-.. ....+...... .++|+++|+||+|+.... ........+.+ . ...++
T Consensus 69 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~---~---~~~~~ 139 (164)
T cd04139 69 HR---SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR---Q---WGVPY 139 (164)
T ss_pred hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH---H---hCCeE
Confidence 33 37899999997642111 11222222222 478999999999997621 11111111111 1 14689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|+|+++++++|.+.+.
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 140 VETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987664
No 92
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.84 E-value=7.9e-20 Score=153.70 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=117.4
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
.+.+--.|+++|+|++|||||+|.|++.. +.+.++++||..+ ...+.|..++++|+||+.+...... ..
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~------gr 130 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR------GR 130 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCC------CC
Confidence 34566799999999999999999999985 7899999999886 3556688999999999976533221 11
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch----------------------------------------------------
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD---------------------------------------------------- 192 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~---------------------------------------------------- 192 (269)
-.+.++...+||++++|+|+.......+
T Consensus 131 G~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~E 210 (365)
T COG1163 131 GRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILRE 210 (365)
T ss_pred cceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHH
Confidence 2345566667999999999864322110
Q ss_pred ----------------HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHH
Q 024325 193 ----------------HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 254 (269)
Q Consensus 193 ----------------~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~ 254 (269)
.++++.+... -+|.++|+||+|+.+.++.....+ ..+++++||+.+.|++
T Consensus 211 y~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~------------~~~~v~isa~~~~nld 278 (365)
T COG1163 211 YRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLAR------------KPNSVPISAKKGINLD 278 (365)
T ss_pred hCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHh------------ccceEEEecccCCCHH
Confidence 0111112222 368999999999998655443222 2478999999999999
Q ss_pred HHHHHHHHhhhhhc
Q 024325 255 SLRTVLSKIARFAK 268 (269)
Q Consensus 255 ~L~~~i~~~~~~~k 268 (269)
+|.+.|.+.+...+
T Consensus 279 ~L~e~i~~~L~liR 292 (365)
T COG1163 279 ELKERIWDVLGLIR 292 (365)
T ss_pred HHHHHHHHhhCeEE
Confidence 99999999887654
No 93
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.84 E-value=7.8e-20 Score=143.66 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
+|+++|.+|+|||||++++++. ......+..+.+.+. +...+..+.+|||||.... ..+...++.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~----------~~~~~~~~~--- 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG-EVVTTIPTIGFNVET-VEYKNVSFTVWDVGGQDKI----------RPLWKHYYE--- 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC-CCCCCCCCcCcceEE-EEECCEEEEEEECCCChhh----------HHHHHHHhc---
Confidence 4899999999999999999998 333333333333322 2223567999999997321 122223332
Q ss_pred ccceEEEEEeCCCCCCc--chHHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 174 SLKRVCLLIDTKWGVKP--RDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 174 ~~d~vl~vid~~~~~~~--~~~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
.+|++++|+|+..+... ....+...+. ..+.|+++|+||+|+.......+..+.+.... ......+++++||+
T Consensus 66 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~ 143 (158)
T cd00878 66 NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK--ILGRRWHIQPCSAV 143 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh--ccCCcEEEEEeeCC
Confidence 38999999999753111 1112222222 24689999999999986543333332222110 11234679999999
Q ss_pred CCCCHHHHHHHHHH
Q 024325 249 SGAGIRSLRTVLSK 262 (269)
Q Consensus 249 ~g~gi~~L~~~i~~ 262 (269)
+|.|+++++++|..
T Consensus 144 ~~~gv~~~~~~l~~ 157 (158)
T cd00878 144 TGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCHHHHHHHHhh
Confidence 99999999999865
No 94
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=9.3e-20 Score=173.72 Aligned_cols=158 Identities=23% Similarity=0.307 Sum_probs=113.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...|.|+++|++|+|||||+++|.+. .+ ..+..+|+|.+...+. .+..+.||||||+... ..+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~-~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F----------~~m~~ 355 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT-NV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF----------TAMRA 355 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC-Cc-cccccCceeeeccEEEEEECCEEEEEEECCCCccc----------hhHHH
Confidence 35689999999999999999999876 32 3445667777764332 3577999999997431 12222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCCCeEE
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMM 244 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~vi~ 244 (269)
.....+|++++|+|+.++...+..+.+..+...++|+++|+||+|+.... .......+.+. +........++++
T Consensus 356 ---rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vp 431 (787)
T PRK05306 356 ---RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVP 431 (787)
T ss_pred ---hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEE
Confidence 23344899999999998888888888888888899999999999996532 22222222211 1111122478999
Q ss_pred eeCCCCCCHHHHHHHHHHh
Q 024325 245 VSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~ 263 (269)
+||++|+|+++|+++|...
T Consensus 432 vSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 432 VSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EeCCCCCCchHHHHhhhhh
Confidence 9999999999999998753
No 95
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.83 E-value=2e-19 Score=142.29 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=93.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|.+|+|||||+|++++.... ....|....+.. .. .....+.+|||||... +..+...+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 69 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV--SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE----------YLEVRNEF 69 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEECCeEEEEEEEECCccHH----------HHHHHHHH
Confidence 7999999999999999999987321 122222222221 11 1245688999999621 12333333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--------hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--------SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSL 238 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--------~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 238 (269)
+. .+|++++|+|.++...... ..++..+.. .+.|+++|+||+|+...... ......+ ... .
T Consensus 70 ~~---~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~---~ 140 (168)
T cd04119 70 YK---DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW---AES---K 140 (168)
T ss_pred hc---cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH---HHH---c
Confidence 33 3899999999875322111 233333322 34789999999999742211 1111111 111 1
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
..+++++||++|.|+++++++|.+.+
T Consensus 141 ~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 141 GFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998764
No 96
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=2e-19 Score=144.98 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=94.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..+|+++|.+|+|||||++++.... .. ...|.+..+.. ....+..+.+|||||... +..+...|+.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~-~~--~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~ 83 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGE-VV--TTIPTIGFNVETVEYKNLKFTMWDVGGQDK----------LRPLWRHYYQ 83 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-cc--ccCCccccceEEEEECCEEEEEEECCCCHh----------HHHHHHHHhc
Confidence 3689999999999999999997542 22 22222111111 112356789999999622 1222233333
Q ss_pred cccccceEEEEEeCCCCC--CcchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~--~~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
.+|++++|+|+++.. ......+.+.+.. ...|+++|+||+|+............+.. ........+++++
T Consensus 84 ---~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~--~~~~~~~~~~~~~ 158 (182)
T PTZ00133 84 ---NTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL--HSVRQRNWYIQGC 158 (182)
T ss_pred ---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC--CcccCCcEEEEee
Confidence 399999999987421 1112223333332 35799999999998654322222222110 0111112356789
Q ss_pred eCCCCCCHHHHHHHHHHhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~ 265 (269)
||++|.|+++++++|.+.+.
T Consensus 159 Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 159 CATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 97
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.83 E-value=5.4e-19 Score=140.35 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|++|+|||||++++++..-.....+..+++....... ....+.+|||||... +..+...+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER----------FRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence 36899999999999999999998731111112222222211111 134688999999521 12223333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+ ..+|++++|+|+....+... ..++..+.. .+.|+++|.||+|+.+...... +........ ...++++
T Consensus 73 ~---~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~~ 144 (167)
T cd01867 73 Y---RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSK--EEGEALADE---YGIKFLE 144 (167)
T ss_pred h---CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH--HHHHHHHHH---cCCEEEE
Confidence 3 34999999999875322111 233333333 3579999999999985322111 111111221 2468999
Q ss_pred eeCCCCCCHHHHHHHHHHhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~ 264 (269)
+||++|.|+++++++|.+.+
T Consensus 145 ~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 145 TSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 98
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.83 E-value=7.9e-20 Score=136.53 Aligned_cols=113 Identities=24% Similarity=0.399 Sum_probs=86.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
+|+++|.+|+|||||+|+|++. ....+++.+++|++.... ..+..+.++||||+.+........ .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence 5899999999999999999997 567899999999998442 236678999999997754332211 22333444
Q ss_pred cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEec
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK 212 (269)
....+|++++|+|+.......+..+++.+. .++|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 456699999999987644455677888886 78999999998
No 99
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.83 E-value=4.3e-19 Score=141.08 Aligned_cols=154 Identities=17% Similarity=0.131 Sum_probs=96.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..+|+++|.+|+|||||++++++.. .... ....|.+........ ...+.+|||||.. .+..+...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 72 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSITRS 72 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 4689999999999999999999873 2211 222222222222222 3468999999952 12223333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+. ..+|++++|+|+....+..+ ..++..+.. .+.|+++|.||+|+........ ......... ...+++
T Consensus 73 ~~---~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~ 144 (168)
T cd01866 73 YY---RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSY--EEGEAFAKE---HGLIFM 144 (168)
T ss_pred Hh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH--HHHHHHHHH---cCCEEE
Confidence 33 34899999999874222211 233333433 2589999999999974322111 111111222 246799
Q ss_pred EeeCCCCCCHHHHHHHHHHhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++||++|+|+++++.++.+.+
T Consensus 145 e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 145 ETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 100
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.83 E-value=3.8e-19 Score=140.92 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|++|+|||||++++++.. . .....++.+.+.. ... ....+.+|||||... +..+...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~ 70 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-Y-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER----------FRTITSS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHH
Confidence 589999999999999999999862 2 2222333332322 111 134688999999521 2223333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
++. .+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+........ +........ ...+++
T Consensus 71 ~~~---~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~ 142 (166)
T cd01869 71 YYR---GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY--SEAQEFADE---LGIPFL 142 (166)
T ss_pred HhC---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH--HHHHHHHHH---cCCeEE
Confidence 333 4999999999875221111 123333333 3579999999999865432211 111111111 246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++.+|.+.+.
T Consensus 143 ~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 143 ETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred EEECCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 101
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.83 E-value=4.2e-19 Score=140.46 Aligned_cols=153 Identities=17% Similarity=0.155 Sum_probs=95.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..+|+++|++|+|||||++++++.. . .....|.++.+.. .... ...+.+|||||.. .+..+..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNE-F-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAITS 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHH
Confidence 3589999999999999999999873 2 2222333333221 1111 2358899999962 1233334
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.++. .++++++|+|.++.....+ .+++..+.. .+.|+++|+||+|+........ +........ ...++
T Consensus 71 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 142 (165)
T cd01868 71 AYYR---GAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--EEAKAFAEK---NGLSF 142 (165)
T ss_pred HHHC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCH--HHHHHHHHH---cCCEE
Confidence 4433 3899999999874322211 233333333 2589999999999875322111 111111221 14679
Q ss_pred EEeeCCCCCCHHHHHHHHHHhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++||++|.|+++++++|...+
T Consensus 143 ~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999997654
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=2.2e-19 Score=144.70 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=95.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..+|+++|.+|+|||||++++... .. ....|.+..+.. ....+..+.+|||||... . ..+...|+.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~-~~--~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~------~----~~~~~~~~~ 83 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLG-EI--VTTIPTIGFNVETVEYKNISFTVWDVGGQDK------I----RPLWRHYFQ 83 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC-CC--ccccCCcceeEEEEEECCEEEEEEECCCCHH------H----HHHHHHHhc
Confidence 368999999999999999999865 22 222222222222 222356799999999621 1 223233333
Q ss_pred cccccceEEEEEeCCCCCCcch--HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc--CCCCCCeE
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVM 243 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~vi 243 (269)
.+|++++|+|+++...... .++...+.. .+.|+++|+||+|+.......+.. +.+... ......++
T Consensus 84 ---~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~----~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 84 ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT----DKLGLHSLRQRHWYIQ 156 (181)
T ss_pred ---cCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHH----HHhCccccCCCceEEE
Confidence 3899999999985322111 122222222 368999999999997654433222 222111 11122466
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|+|+++++++|.+.+.
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999987654
No 103
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.83 E-value=3.5e-19 Score=141.13 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCC-CCceeEee---EEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-~gtt~~~~---~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.+|+++|.+|+|||||++++.+.. . ...+ |.++.+.. ... ....+.+|||||... +..+..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~----------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS-F--TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER----------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C--CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHH
Confidence 479999999999999999999873 2 2222 22221221 111 124689999999621 122223
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (269)
.+ ...+|++++|+|.++...... .+++..+.. ...|+++|+||+|+...... .+....+.+ . ...+
T Consensus 69 ~~---~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~ 139 (165)
T cd01865 69 AY---YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLAD---Q---LGFE 139 (165)
T ss_pred HH---ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHH---H---cCCE
Confidence 33 335999999999874321111 233344433 25789999999999754321 111111211 1 2457
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++++||++|.|+++|+++|...+
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 140 FFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 104
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=1.8e-19 Score=137.04 Aligned_cols=141 Identities=23% Similarity=0.272 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
.+|+++|++|||||||+++|.+.. . ....|+.+.+.. .+|||||-.-- ...+......+.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~-~-----~~~KTq~i~~~~-----~~IDTPGEyiE---------~~~~y~aLi~ta 61 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE-I-----RYKKTQAIEYYD-----NTIDTPGEYIE---------NPRFYHALIVTA 61 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC-C-----CcCccceeEecc-----cEEECChhhee---------CHHHHHHHHHHH
Confidence 379999999999999999999973 1 122556666542 45999994211 023444555556
Q ss_pred cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC-CchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCC
Q 024325 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 251 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~ 251 (269)
.++|+|++|.|+..+.......+... .+.|+|-|+||+|+. ++.+.+...+.++ ... ..++|.+|+.+|+
T Consensus 62 ~dad~V~ll~dat~~~~~~pP~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~----~aG--~~~if~vS~~~~e 132 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFPPGFASM---FNKPVIGVITKIDLPSDDANIERAKKWLK----NAG--VKEIFEVSAVTGE 132 (143)
T ss_pred hhCCEEEEEecCCCCCccCCchhhcc---cCCCEEEEEECccCccchhhHHHHHHHHH----HcC--CCCeEEEECCCCc
Confidence 67999999999987554444444333 468999999999998 3334443333333 221 3467999999999
Q ss_pred CHHHHHHHHHH
Q 024325 252 GIRSLRTVLSK 262 (269)
Q Consensus 252 gi~~L~~~i~~ 262 (269)
|+++|.++|.+
T Consensus 133 Gi~eL~~~L~~ 143 (143)
T PF10662_consen 133 GIEELKDYLEE 143 (143)
T ss_pred CHHHHHHHHhC
Confidence 99999999863
No 105
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.83 E-value=2.8e-19 Score=141.72 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce----eEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt----~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++++.. . ...+..+. .... .......+.+|||||.... ..+...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~-f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT-F--RESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C--CCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc----------hHHHHH
Confidence 479999999999999999999862 1 11111111 1111 1112345789999997431 122223
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
+.. .++++++|+|.+...+... ..+++.+.. .++|+++|+||+|+....+..... ...... ....
T Consensus 69 ~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~--~~~~~~---~~~~ 140 (165)
T cd04140 69 SIS---KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE--GAACAT---EWNC 140 (165)
T ss_pred Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH--HHHHHH---HhCC
Confidence 332 3899999999875433222 233444433 358999999999997532221111 111111 1246
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
+++++||++|+|+++++++|...
T Consensus 141 ~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 141 AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred cEEEeecCCCCCHHHHHHHHHhc
Confidence 78999999999999999999754
No 106
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=3e-19 Score=149.35 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=105.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
+|+++|++|+|||||+|+|++.. ..+++++++|.+... ...+..+.+|||||+....... ..+...+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~ 73 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIA 73 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHH
Confidence 68999999999999999999974 557888998876543 2346789999999985432111 112223334
Q ss_pred cccccceEEEEEeCCCCCCc------------------------------------------ch-HH-------------
Q 024325 171 TRVSLKRVCLLIDTKWGVKP------------------------------------------RD-HE------------- 194 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~------------------------------------------~~-~~------------- 194 (269)
....+|++++|+|+...... .+ ..
T Consensus 74 ~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~ 153 (233)
T cd01896 74 VARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNA 153 (233)
T ss_pred hhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeE
Confidence 45569999999997642210 00 01
Q ss_pred ------------HHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHH
Q 024325 195 ------------LISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 260 (269)
Q Consensus 195 ------------~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i 260 (269)
+.+.+.. ..+|+++|+||+|+.+..+... +.. ..+++++||++|.|+++|++.|
T Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~--------~~~----~~~~~~~SA~~g~gi~~l~~~i 221 (233)
T cd01896 154 DVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL--------LAR----QPNSVVISAEKGLNLDELKERI 221 (233)
T ss_pred EEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH--------Hhc----CCCEEEEcCCCCCCHHHHHHHH
Confidence 1111111 1258999999999986654331 111 2468999999999999999999
Q ss_pred HHhhhhhc
Q 024325 261 SKIARFAK 268 (269)
Q Consensus 261 ~~~~~~~k 268 (269)
.+.+...+
T Consensus 222 ~~~L~~ir 229 (233)
T cd01896 222 WDKLGLIR 229 (233)
T ss_pred HHHhCcEE
Confidence 98876554
No 107
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.83 E-value=2.8e-19 Score=140.83 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=95.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
+|+++|++|+|||||+|+|++........+.++.+....... ....+.+|||||... +..+...++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~- 70 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSYY- 70 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHh-
Confidence 799999999999999999998732122333444333332222 134689999999622 122222232
Q ss_pred cccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
..+|++++|+|.....+... ..++..+.. .+.|+++|+||+|+............+ ... ...+++++
T Consensus 71 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~---~~~---~~~~~~~~ 142 (161)
T cd01863 71 --RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF---ARK---HNMLFIET 142 (161)
T ss_pred --CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH---HHH---cCCEEEEE
Confidence 34999999999875322221 223333332 367899999999998433222211122 111 14679999
Q ss_pred eCCCCCCHHHHHHHHHHh
Q 024325 246 SSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~ 263 (269)
||++|+|++++++.+.+.
T Consensus 143 Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 143 SAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 108
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.83 E-value=3.2e-19 Score=139.18 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
++|+++|.+|+|||||+|++++.. .... .+..+.+....... ....+.+|||||.. .+......+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHHHH
Confidence 379999999999999999999873 2222 22222222222222 24568899999962 122233333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+ ..+|++++|+|+........ ..++..+... ..|+++|+||+|+..+.... ...+.+.... ...+++.
T Consensus 70 ~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~---~~~~~~~ 141 (159)
T cd00154 70 Y---RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS--TEEAQQFAKE---NGLLFFE 141 (159)
T ss_pred h---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc--HHHHHHHHHH---cCCeEEE
Confidence 3 34999999999975221111 2344444443 48999999999997322211 1222222222 2578999
Q ss_pred eeCCCCCCHHHHHHHHH
Q 024325 245 VSSKSGAGIRSLRTVLS 261 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~ 261 (269)
+||++|.|+++++++|.
T Consensus 142 ~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 142 TSAKTGENVEELFQSLA 158 (159)
T ss_pred EecCCCCCHHHHHHHHh
Confidence 99999999999999985
No 109
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=4.2e-19 Score=140.25 Aligned_cols=151 Identities=16% Similarity=0.156 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee--EEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~--~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
+|+++|.+|+|||||++++.+. .......+..++ .++. ... ....+.+|||||. +.+..+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~ 70 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN-GAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ----------ELYSDMVS 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH----------HHHHHHHH
Confidence 7999999999999999999864 112333443333 2321 111 1246889999995 22233444
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH-HHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~v 242 (269)
.++ ..+|++++|+|.+...+... ..++..+... +.|+++|+||+|+.+..+..... +.+.. ....++
T Consensus 71 ~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~ 141 (164)
T cd04101 71 NYW---ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQ------ANQLKF 141 (164)
T ss_pred HHh---CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHH------HcCCeE
Confidence 443 34999999999875322111 2344444433 58999999999997543222111 11111 124678
Q ss_pred EEeeCCCCCCHHHHHHHHHHhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++||++|.|++++++.|.+.+
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 142 FKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEeCCCCCChHHHHHHHHHHh
Confidence 9999999999999999998764
No 110
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.82 E-value=1.7e-19 Score=168.84 Aligned_cols=151 Identities=26% Similarity=0.285 Sum_probs=105.8
Q ss_pred cCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 024325 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL 175 (269)
Q Consensus 99 G~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (269)
|.||+|||||+|+|++.. ..+++.||+|.+.... ..+..+.+|||||..+-..... . +.+...|... ..+
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~---e~v~~~~l~~-~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E---EEVARDYLLN-EKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-H---HHHHHHHHhh-cCC
Confidence 899999999999999984 5789999999987532 3466799999999865321110 0 1222333332 348
Q ss_pred ceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325 176 KRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 176 d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~ 255 (269)
|++++|+|+++. .....+...+.+.++|+++|+||+|+..........+.+.+. .+.|++++||++|+|+++
T Consensus 74 DvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~------lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 74 DLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER------LGVPVVPTSATEGRGIER 145 (591)
T ss_pred CEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH------cCCCEEEEECCCCCCHHH
Confidence 999999999752 223444455556789999999999986543322222233222 247899999999999999
Q ss_pred HHHHHHHhh
Q 024325 256 LRTVLSKIA 264 (269)
Q Consensus 256 L~~~i~~~~ 264 (269)
++++|.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998754
No 111
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=1.5e-19 Score=146.53 Aligned_cols=157 Identities=19% Similarity=0.169 Sum_probs=94.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
.++|+++|++|||||||++++.+. ......+..+.+. ..+...+..+.+|||||... . ..+...++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~-~~~~~~~T~~~~~-~~i~~~~~~~~l~D~~G~~~------~----~~~~~~~~-- 84 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD-RLAQHVPTLHPTS-EELTIGNIKFKTFDLGGHEQ------A----RRLWKDYF-- 84 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccCcce-EEEEECCEEEEEEECCCCHH------H----HHHHHHHh--
Confidence 468999999999999999999986 3222222222211 11222356788999999621 1 11122222
Q ss_pred ccccceEEEEEeCCCCCC--cchHHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH---------hcCC
Q 024325 172 RVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK---------ANNS 237 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~--~~~~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~ 237 (269)
..+|.+++|+|..+... .....+...+. ..+.|+++|+||+|+..........+.+...-. ....
T Consensus 85 -~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T cd00879 85 -PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGI 163 (190)
T ss_pred -ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCc
Confidence 34899999999874311 11122222222 245899999999999754333333222211000 0001
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
...+++++||++|+|+++++++|...
T Consensus 164 ~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 164 RPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eeEEEEEeEecCCCChHHHHHHHHhh
Confidence 12468999999999999999999765
No 112
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=9.1e-19 Score=138.08 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=96.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||++++++.. . .....+.++.+. ..... + ..+.+|||||.. .+..+...+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~ 69 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGK-F-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSSY 69 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHH
Confidence 79999999999999999999873 2 222223223222 11122 2 367899999952 122333344
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi 243 (269)
+ ..+|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+....... +....+ ... ...+++
T Consensus 70 ~---~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~---~~~---~~~~~~ 140 (164)
T smart00175 70 Y---RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF---AEE---HGLPFF 140 (164)
T ss_pred h---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH---HHH---cCCeEE
Confidence 3 34999999999875322221 123333333 358999999999987632211 111111 111 146799
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 141 e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 141 ETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred EEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988763
No 113
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.82 E-value=3.1e-19 Score=141.74 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-eEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
+|+++|.+|||||||+++++.........+..+..... .+.. ....+.+|||||.... ..+...++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~ 71 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----------GGLRDGYYI 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh----------ccccHHHhc
Confidence 79999999999999999998652111112211111111 1111 1346889999997321 122222322
Q ss_pred cccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
.+|++++|+|.+...+... ..++..+... ++|+++|+||+|+......... . +... ....+++++||
T Consensus 72 ---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~-~---~~~~---~~~~~~~e~Sa 141 (166)
T cd00877 72 ---GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQ-I---TFHR---KKNLQYYEISA 141 (166)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHH-H---HHHH---HcCCEEEEEeC
Confidence 3899999999875422222 1233444332 6999999999999743211111 1 1111 12567999999
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024325 248 KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~ 265 (269)
++|.|+++++++|.+.+.
T Consensus 142 ~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 142 KSNYNFEKPFLWLARKLL 159 (166)
T ss_pred CCCCChHHHHHHHHHHHH
Confidence 999999999999987764
No 114
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.82 E-value=5.2e-19 Score=139.51 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccc-cCCCCCce---eEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~-~s~~~gtt---~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.+|+++|++|+|||||+|++++.. ... ..+..+.+ ..+.+...+..+.+|||||... +..+...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 70 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNE-FSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPMY 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence 479999999999999999999873 222 23333322 2222222345688999999521 12222223
Q ss_pred HhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
. ..+|++++|+|++...+.. ...++..+... ..|+++|+||+|+........ .......... ..++++
T Consensus 71 ~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~~~~~~---~~~~~~ 142 (163)
T cd01860 71 Y---RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVST--EEAQEYADEN---GLLFFE 142 (163)
T ss_pred h---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCH--HHHHHHHHHc---CCEEEE
Confidence 2 2389999999987432111 12344444333 478999999999874321111 1111222221 367999
Q ss_pred eeCCCCCCHHHHHHHHHHhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~ 264 (269)
+||++|.|+++++++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 143 TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 115
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=3.1e-19 Score=144.91 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=95.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|.+|+|||||+++|+.. . +...+++|+.+.. ....+ ..+.+|||||... +..+...|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~-~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLN-H--FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE----------YTALRDQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhC-C--CCccCCCchHhhEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence 4899999999999999999876 2 2333444443221 11112 3478999999622 12233334
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
+.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+......... ...+.... ...+
T Consensus 68 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~--~~~~~~~~---~~~~ 139 (190)
T cd04144 68 IRE---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTE--EGAALARR---LGCE 139 (190)
T ss_pred HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHH--HHHHHHHH---hCCE
Confidence 333 899999999875322221 233333332 35799999999999643222111 11111111 1367
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++++|.+.+.
T Consensus 140 ~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 140 FIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 116
>CHL00071 tufA elongation factor Tu
Probab=99.82 E-value=5.2e-19 Score=159.50 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=115.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc--------------cccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcch
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA 153 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~--------------~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~ 153 (269)
...+|+++|++|+|||||+|+|++.... ......+|+|.+.... ..+..+.|+||||+.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 3468999999999999999999975210 0111236788776432 235678999999962
Q ss_pred hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHH-HHHHHHHHHH
Q 024325 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEES 231 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~-~~~~~~~~~~ 231 (269)
.+.......+..+|++++|+|+..+...++.+++..+...++| +|+|+||+|+.+..+. +.....+...
T Consensus 87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 3344444555569999999999988888888899988888999 7789999999875443 2233456665
Q ss_pred HHhcC--CCCCCeEEeeCCCCCC------------------HHHHHHHHHHhh
Q 024325 232 LKANN--SLVQPVMMVSSKSGAG------------------IRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~--~~~~~vi~vSa~~g~g------------------i~~L~~~i~~~~ 264 (269)
+.... ....|++++||.+|.+ +..|++.|...+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 55432 1247899999999863 567777776543
No 117
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.82 E-value=6.7e-19 Score=141.36 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=94.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-----eEEE----------eCCcEEEEcCCCCCCcchhHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFK----------LGTKLCLVDLPGYGFAYAKEE 156 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-----~~~~----------~~~~~~lvDtpG~~~~~~~~~ 156 (269)
..+|+++|.+|+|||||++++.+.. ......+..+.+. .+.. ....+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK--FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------
Confidence 3689999999999999999998862 1111122221121 1110 12458899999952
Q ss_pred HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHH
Q 024325 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (269)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 231 (269)
.+..+...+++ .+|++++|+|.....+..+ ..++..+.. .+.|+++|.||+|+........ +...+.
T Consensus 75 ---~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~--~~~~~~ 146 (180)
T cd04127 75 ---RFRSLTTAFFR---DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE--EQAKAL 146 (180)
T ss_pred ---HHHHHHHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH--HHHHHH
Confidence 22333344443 4999999999875322221 233333433 2578999999999975322111 111222
Q ss_pred HHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 232 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.... ..+++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~---~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 147 ADKY---GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2221 46899999999999999999998754
No 118
>PTZ00369 Ras-like protein; Provisional
Probab=99.82 E-value=2.5e-19 Score=145.34 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=95.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e--eEE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~--~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||++++++.. +...+.+|..+ . .+. .....+.+|||||.... ..+..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~l~~ 71 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNH---FIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY----------SAMRD 71 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC---CCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc----------hhhHH
Confidence 3689999999999999999999862 22222222211 1 111 11335779999997432 23333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.|.. .+|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+......... ........ ...+
T Consensus 72 ~~~~---~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~--~~~~~~~~---~~~~ 143 (189)
T PTZ00369 72 QYMR---TGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG--EGQELAKS---FGIP 143 (189)
T ss_pred HHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH--HHHHHHHH---hCCE
Confidence 3443 3899999999875422111 223333322 36799999999998643221110 11111111 1368
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++++|.+.+.
T Consensus 144 ~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 144 FLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 119
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=7.9e-19 Score=144.85 Aligned_cols=155 Identities=20% Similarity=0.136 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+++|++. ......+..+.+........ ...+.+|||||... +..+...+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~ 82 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTLTSSY 82 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence 468999999999999999999987 33333333333333222222 24688999999632 22333344
Q ss_pred HhcccccceEEEEEeCCCCCCcchH--HHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
+. .+|++++|+|.+...+.... .+...+.. .+.|+++|+||+|+........ +........ ...++
T Consensus 83 ~~---~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~~~~~~~---~~~~~ 154 (211)
T PLN03118 83 YR---NAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEGMALAKE---HGCLF 154 (211)
T ss_pred Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHHHHHHHH---cCCEE
Confidence 33 38999999998753222221 12222322 2568999999999975433211 111111111 14678
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 155 ~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 155 LECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987663
No 120
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.82 E-value=4.3e-19 Score=140.73 Aligned_cols=151 Identities=16% Similarity=0.157 Sum_probs=95.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-Ee--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.+|+++|.+|+|||||++++.+. . +...++.|+. +. ..... ...+.+|||||.. .+..+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~-~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK-K--FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE----------RFRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC-C--CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHH
Confidence 57999999999999999999987 2 2334443332 21 11111 3457899999952 1223333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.++. .+|++++|+|.++..+... ..++..+.. .+.|+++|.||+|+........ +...+.... ...++
T Consensus 70 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 141 (166)
T cd04122 70 SYYR---GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTY--EEAKQFADE---NGLLF 141 (166)
T ss_pred HHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCH--HHHHHHHHH---cCCEE
Confidence 3433 4999999999875322111 133333322 3578999999999975432211 111122221 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++||++|.|+++++.++...+
T Consensus 142 ~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 142 LECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999887654
No 121
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.82 E-value=7e-19 Score=138.63 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCC-CCCceeEeeE--E-----EeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINF--F-----KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~gtt~~~~~--~-----~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
+|+++|.+|+|||||++++++.. .... .+....+... . .....+.+|||||.. .+..+.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI---FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhH
Confidence 69999999999999999999862 1222 2222233211 1 113468999999952 223444
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
..+++ .+|++++|+|......... ..++..+.. .+.|+++|+||+|+........ +........ ...++
T Consensus 69 ~~~~~---~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~ 140 (162)
T cd04106 69 KAYYR---GAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN--EEAEALAKR---LQLPL 140 (162)
T ss_pred HHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH--HHHHHHHHH---cCCeE
Confidence 44443 4899999999874322111 123333322 3689999999999975432211 111111111 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~ 263 (269)
+++||++|.|+++++++|...
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 141 FRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998754
No 122
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=8.5e-19 Score=143.58 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=94.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEee--EEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTIN--FFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~--~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
.+|+++|.+|+|||||++++++.. ....+..| ..+.. .... ...+.+|||||... +..+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~---~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~----------~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI---FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----------FGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh----------hhhhH
Confidence 379999999999999999999862 12222222 22321 1111 23578999999621 23333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH-------hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 237 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~-------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 237 (269)
..++. .++++++|+|......... ..++..+. ...+|+++|+||+|+....... ...+.+......
T Consensus 68 ~~~~~---~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~--~~~~~~~~~~~~- 141 (201)
T cd04107 68 RVYYR---GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD--GEQMDQFCKENG- 141 (201)
T ss_pred HHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC--HHHHHHHHHHcC-
Confidence 44444 3899999999875322221 12222222 1357999999999997321111 111222222211
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
..+++++||++|.|+++++++|.+.+.
T Consensus 142 -~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 142 -FIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred -CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 257999999999999999999988663
No 123
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=6.5e-19 Score=143.09 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=96.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+|+++|.+|+|||||++++.+.. .....++.|+ .+.. .... ...+.+|||||.. .+..+...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 69 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGA--FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTHA 69 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhHH
Confidence 69999999999999999998863 2222322222 2221 1222 2468899999952 11222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v 242 (269)
++ ..+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+....... .....+. .. ...++
T Consensus 70 ~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~---~~---~~~~~ 140 (191)
T cd04112 70 YY---RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLA---KE---YGVPF 140 (191)
T ss_pred Hc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHH---HH---cCCeE
Confidence 33 34899999999875322211 223333333 357999999999996432211 1111221 11 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
+++||++|.|+++++++|.+.+...
T Consensus 141 ~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 141 METSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998876543
No 124
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.82 E-value=8.7e-19 Score=145.02 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=95.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCC-CceeEeeE--EEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF--FKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-gtt~~~~~--~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
+|+++|.+|+|||||+|+|++.. +...+. ..+.+... ... ...+.+|||||.. .+..+..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~---~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG---FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC---CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHHH
Confidence 69999999999999999999872 233333 23334321 111 2467899999952 1233444
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh------CCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL 238 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~------~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 238 (269)
.|+. .+|++++|+|.++...... ..++..+... +.|+++|+||+|+....... .....+. .. .
T Consensus 69 ~~~~---~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~---~~---~ 139 (215)
T cd04109 69 KYIY---GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA---QA---N 139 (215)
T ss_pred HHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH---HH---c
Confidence 4443 3999999999875322221 2333444332 35799999999997432211 1111221 11 1
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
..+++++||++|+|+++++++|...+.
T Consensus 140 ~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 140 GMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999988764
No 125
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.82 E-value=3.1e-19 Score=140.98 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EE-e--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~-~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++++.. ....+.+|..+... .. . ...+.+|||||.... ..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT---FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccc----------cchHHH
Confidence 479999999999999999998762 22233333322211 11 1 234778999996321 222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~ 241 (269)
|.. .+|++++|+|..+..+..+ ..++..+.. .++|+++|+||+|+........ ....+.+ . ...+
T Consensus 69 ~~~---~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~ 139 (163)
T cd04176 69 YIK---NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE---E---WGCP 139 (163)
T ss_pred HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH---H---hCCE
Confidence 333 3899999999875322111 233333332 4689999999999864322111 1111111 1 1368
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++++||++|.|+++++.+|.+.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 140 FMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998654
No 126
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=5.3e-19 Score=159.33 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=107.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcc--ccCCCCCceeEeeEE-----------------E------------eCCcE
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFF-----------------K------------LGTKL 140 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~--~~s~~~gtt~~~~~~-----------------~------------~~~~~ 140 (269)
..+|+++|.+++|||||+++|.+.. .. ......|.|-+..+. . .+..+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999998641 10 001112233222211 0 13568
Q ss_pred EEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCc
Q 024325 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP 218 (269)
Q Consensus 141 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~ 218 (269)
.+|||||+ ..+...+......+|.+++|+|+..+. ..+..+.+..+...++ |+++|+||+|+.+.
T Consensus 83 ~liDtPGh-------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCH-------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 99999996 233344455555689999999999876 5666666666666654 68999999999875
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 219 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.........+.+.+........+++++||++|+|+++|+++|...+
T Consensus 150 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 150 EKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 5443333444444332222356899999999999999999998754
No 127
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.82 E-value=6.3e-19 Score=143.94 Aligned_cols=160 Identities=17% Similarity=0.079 Sum_probs=95.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|.+|+|||||++++++.. .. ....|.++.+.. ....+ ..+.+|||||...... .....|... .
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~-f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~e~~~~---~ 74 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE-FP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG--TAGQEWMDP---R 74 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC-CC-cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc--cchhHHHHH---H
Confidence 69999999999999999999862 21 122333332321 11123 4578999999753211 111111111 1
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
......+|++++|+|++.+.+... ..+.+.+.. .++|+++|.||+|+........ +.+...... ....+
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~--~~~~~~~~~--~~~~~ 150 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPR--HVLSVLVRK--SWKCG 150 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccH--HHHHHHHHH--hcCCc
Confidence 222345999999999975422221 223333322 3589999999999965321111 111111111 12578
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++++||++|.|+++|++.+.+.+
T Consensus 151 ~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 151 YLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999887654
No 128
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.82 E-value=8.5e-19 Score=143.12 Aligned_cols=165 Identities=23% Similarity=0.214 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccC---CCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s---~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|+|||||+|+|++........ ....+|.....+.. ...+.+|||||+++..... . .+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~--~----~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP--D----DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH--H----HHHHH
Confidence 479999999999999999999852111111 11123443333321 3468999999997642211 1 11111
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH---------HHHHHHHHHH----HHHh
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID---------VARRAMQIEE----SLKA 234 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~----~~~~ 234 (269)
.....+|+++++.+. .+...+..+++.+...+.|+++|+||+|+..+.. .....+.+.+ .+..
T Consensus 76 --~~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 --MKFSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred --hCccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 113347888887543 5677788889999888999999999999975432 1223333333 3332
Q ss_pred cCCCCCCeEEeeCC--CCCCHHHHHHHHHHhhhhh
Q 024325 235 NNSLVQPVMMVSSK--SGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 235 ~~~~~~~vi~vSa~--~g~gi~~L~~~i~~~~~~~ 267 (269)
......+++.+|+. .++|+..|.+.|...+...
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 22335689999998 6899999999998877543
No 129
>PRK12736 elongation factor Tu; Reviewed
Probab=99.82 E-value=9.2e-19 Score=157.19 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=116.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC-----cc---------ccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-----~~---------~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~ 153 (269)
...+|+++|++++|||||+++|++... .. ......|+|.+..... .+..+.++||||+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh----- 85 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH----- 85 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH-----
Confidence 346899999999999999999987310 00 0111567787765333 3567899999996
Q ss_pred hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHH-HHHHHHHH
Q 024325 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEES 231 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~-~~~~~~~~ 231 (269)
..+...+......+|++++|+|+..+...++.+++..+...++| +++|+||+|+.+..+..+ ....+.+.
T Consensus 86 --------~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 86 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred --------HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 23445555666679999999999988888888888888888998 678999999985544332 23355555
Q ss_pred HHhcC--CCCCCeEEeeCCCCC--------CHHHHHHHHHHhh
Q 024325 232 LKANN--SLVQPVMMVSSKSGA--------GIRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~--~~~~~vi~vSa~~g~--------gi~~L~~~i~~~~ 264 (269)
+.... ....|++++||++|. +++.|++.|...+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 54332 124689999999983 6889998887765
No 130
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=3.1e-19 Score=148.04 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=98.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCc-----------------------------cccCCCCCceeEeeE---EEeCCcEE
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINF---FKLGTKLC 141 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~-----------------------------~~~s~~~gtt~~~~~---~~~~~~~~ 141 (269)
+|+++|++++|||||+.+|+..... .......|+|++... ...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999998643110 001114567777643 33477899
Q ss_pred EEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhC-CcEEEEEecC
Q 024325 142 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVLTKT 213 (269)
Q Consensus 142 lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~-~p~iiv~NK~ 213 (269)
+|||||+. .+...+......+|++++|+|+..+ ...+....+......+ .|+++|+||+
T Consensus 81 liDtpG~~-------------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHR-------------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred EEECCChH-------------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 99999962 1223344445569999999999863 3334445555555555 6899999999
Q ss_pred CCCCc----hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHH
Q 024325 214 DTVFP----IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIR 254 (269)
Q Consensus 214 Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~ 254 (269)
|+..+ .......+.+...+..... ...+++++||++|.|++
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 99842 2344445555544544321 24789999999999987
No 131
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.81 E-value=8.2e-19 Score=138.26 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
+|+++|++|+|||||+++|++........+..+.......... ...+.+|||||... +..+...++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER----------FRSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH----------HHHhHHHHhc
Confidence 7999999999999999999987311111122221111111111 24578999999621 1223333333
Q ss_pred cccccceEEEEEeCCCCCCcch-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
.+|++++|+|.....+... ..++..+. ..+.|+++|+||+|+....... .......... ...+++.+|
T Consensus 72 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~---~~~~~~~~S 143 (161)
T cd04113 72 ---GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVT--FLEASRFAQE---NGLLFLETS 143 (161)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCC--HHHHHHHHHH---cCCEEEEEE
Confidence 4899999999976433222 23333332 2468999999999997532211 1111112222 137899999
Q ss_pred CCCCCCHHHHHHHHHHh
Q 024325 247 SKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~ 263 (269)
|++|.|++++++++.+.
T Consensus 144 a~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 144 ALTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999865
No 132
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.81 E-value=1.5e-18 Score=138.45 Aligned_cols=154 Identities=15% Similarity=0.161 Sum_probs=95.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEeeE--EE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~~--~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+|+++|.+|+|||||++++++.. +...+..|. .+... .. ....+.+|||||.. .+..+...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV---FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE----------RFKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHhhHHH
Confidence 68999999999999999999872 233333332 23221 11 13468999999962 22333334
Q ss_pred HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh----CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
+++ .+|++++|+|+....+.. ...++..+... ..|+++|.||+|+.+..+.............. ...++
T Consensus 69 ~~~---~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~ 142 (170)
T cd04108 69 YYR---GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE---MQAEY 142 (170)
T ss_pred Hhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH---cCCeE
Confidence 433 499999999997421111 12344433222 25689999999986543321111111111111 13578
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+.+||++|.|++++++.|...+..
T Consensus 143 ~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 143 WSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 133
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.81 E-value=1.8e-18 Score=141.43 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=97.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|++|+|||||++++.+.. . .....+....+.. .... ...+.+|||||... +..+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~ 72 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT-F-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER----------FRTIT 72 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-C-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh----------HHHHH
Confidence 35799999999999999999999872 2 1111122222221 1111 23578999999621 22333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
..++. .++++++|+|+++...... ..++..+.. ...|+++|+||+|+........ ......... ...++
T Consensus 73 ~~~~~---~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 144 (199)
T cd04110 73 STYYR---GTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVET--EDAYKFAGQ---MGISL 144 (199)
T ss_pred HHHhC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCH--HHHHHHHHH---cCCEE
Confidence 34433 3899999999875322221 233444433 2479999999999975422211 111111111 24679
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++||++|.|+++++++|...+-.
T Consensus 145 ~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 145 FETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 134
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=1.5e-18 Score=138.01 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=92.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||+|++.+.. . .....+..+.+.. ... ....+.+|||||... +..+...+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~ 69 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK-F-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER----------FQSLGVAF 69 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-C-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHhHHHHH
Confidence 79999999999999999999873 2 1211222222221 111 123467999999621 12222333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHH-Hh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
+ ..+|.+++++|+..+..... ..+...+ .. .++|+++|+||+|+..+..... ..+....... ...
T Consensus 70 ~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~--~~~ 142 (172)
T cd01862 70 Y---RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVST--KKAQQWCQSN--GNI 142 (172)
T ss_pred h---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCH--HHHHHHHHHc--CCc
Confidence 3 34899999999875322111 1222221 11 2689999999999984321110 1111112211 136
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++++||++|.|+++++++|.+.+.
T Consensus 143 ~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 143 PYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 135
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.81 E-value=5.8e-19 Score=140.35 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=96.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
.|+++|.+|||||||++++.+. ......+..|.+.. .+...+..+.+|||||... . ..+...|+ .
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~~~------~----~~~~~~~~---~ 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGGAN------F----RGIWVNYY---A 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCcHH------H----HHHHHHHH---c
Confidence 3799999999999999999986 32333444444322 2223466789999999621 1 22223333 3
Q ss_pred ccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHH-HHHHhcCCCCCCeEEeeC
Q 024325 174 SLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 174 ~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~vSa 247 (269)
.+|++++|+|++....... ..++..+.. .++|+++|+||+|+.......+....+. +.+........+++++||
T Consensus 66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa 145 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSA 145 (167)
T ss_pred CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEc
Confidence 4999999999875322211 223333322 3689999999999976543333333221 011100112356888999
Q ss_pred CCC------CCHHHHHHHHHH
Q 024325 248 KSG------AGIRSLRTVLSK 262 (269)
Q Consensus 248 ~~g------~gi~~L~~~i~~ 262 (269)
++| .|+++.++||..
T Consensus 146 ~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 146 IEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eeCCCCccccCHHHHHHHHhc
Confidence 998 899999999964
No 136
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.81 E-value=9.2e-19 Score=142.84 Aligned_cols=166 Identities=12% Similarity=0.153 Sum_probs=116.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccC-CCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s-~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
+|+++|.||+|||||+|+|++.. ....+ ..+++|+++... ..+..+.++||||+.+..... ......+...+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~--~~~~~~i~~~~~ 78 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE-VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP--EQLSKEIVRCLS 78 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC-ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh--HHHHHHHHHHHH
Confidence 69999999999999999999983 33333 245778776543 347789999999998763321 112234455555
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhh-----CCcEEEEEecCCCCCchHHHHHH----HHHHHHHHhcCCCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQ 240 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-----~~p~iiv~NK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~ 240 (269)
.....+|++++|+++.. ++..+..+++.+... -.++++|+|++|.+.+..+.... ..++..+..+..
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~--- 154 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG--- 154 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC---
Confidence 55677999999999886 777788888877653 25799999999988765544432 234444444321
Q ss_pred CeEEe-----eCCCCCCHHHHHHHHHHhhhh
Q 024325 241 PVMMV-----SSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 241 ~vi~v-----Sa~~g~gi~~L~~~i~~~~~~ 266 (269)
.++.. |+..+.++++|++.|.+.+..
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 22222 467789999999999998875
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.81 E-value=5.7e-19 Score=137.39 Aligned_cols=154 Identities=23% Similarity=0.223 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|+|||||+|+|++. . ...+..++++.+... ... + ..+.+|||||.... ...+......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN-K-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC-C-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhh
Confidence 58999999999999999999998 3 566777778777653 222 3 56889999996331 1111222222
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
.......+|.+++|.+...........+...... +.|+++|+||+|+...... ......+... ...+++++||
T Consensus 74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~--~~~~~~~~sa 146 (161)
T TIGR00231 74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLK----THVAFLFAKL--NGEPIIPLSA 146 (161)
T ss_pred hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhh----HHHHHHHhhc--cCCceEEeec
Confidence 1122222344444444332221222222232322 7899999999999865311 1122222222 1457999999
Q ss_pred CCCCCHHHHHHHHH
Q 024325 248 KSGAGIRSLRTVLS 261 (269)
Q Consensus 248 ~~g~gi~~L~~~i~ 261 (269)
++|.|+++++++|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999875
No 138
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.81 E-value=8.2e-19 Score=139.56 Aligned_cols=153 Identities=14% Similarity=0.062 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-----eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-----~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
...+|+++|.+|+|||||++++++.. ......+..+.+. .+......+.+|||||.. .+..+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~ 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE----------RFRSLR 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhH
Confidence 34789999999999999999998763 2222222222221 111123457899999952 223333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 237 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 237 (269)
..++. .+|++++|+|......... ..+...+.. .+.|+++|+||+|+........ .+.+.....
T Consensus 72 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~-- 143 (170)
T cd04116 72 TPFYR---GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTE---EAQAWCREN-- 143 (170)
T ss_pred HHHhc---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHH---HHHHHHHHC--
Confidence 44443 3899999998764322211 122222211 3579999999999864221111 122222222
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
...+++++||++|.|++++++++.+.
T Consensus 144 ~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 144 GDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 13578999999999999999998764
No 139
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=1.1e-18 Score=138.43 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=95.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|++|+|||||++++.+.. ......+..+.+.. +...+ ..+.+|||||... +.....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 74 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSITQ 74 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 4789999999999999999998652 11222222222321 11122 4578999999621 222223
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHH-HHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (269)
.++. .+|.+++|+|.+....... ..++..+. ..+.|+++|+||+|+....+.... ...+. .. ...+
T Consensus 75 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~--~~~~ 145 (169)
T cd04114 75 SYYR---SANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFS----DA--QDMY 145 (169)
T ss_pred HHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH----HH--cCCe
Confidence 3333 3899999999875322111 13333333 236899999999999754332211 12221 11 1367
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 146 YLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998753
No 140
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=1.1e-18 Score=157.24 Aligned_cols=162 Identities=22% Similarity=0.279 Sum_probs=111.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEE-----------------e------------CCcE
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------L------------GTKL 140 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~-----------------~------------~~~~ 140 (269)
...+|+++|+.++|||||+.+|.+.. ....-.-..|.|-+..+.. . ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 34689999999999999999997641 0011111234554432210 0 2468
Q ss_pred EEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCc
Q 024325 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP 218 (269)
Q Consensus 141 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~ 218 (269)
.+|||||. ..+...++.....+|.+++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+.
T Consensus 88 ~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 88 SFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK 154 (411)
T ss_pred EEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc
Confidence 99999996 345556677777799999999999776 5565666666666665 68999999999875
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 219 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.........+...+........+++++||++|+|+++|+++|...+.
T Consensus 155 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 155 ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 54433334444433322223578999999999999999999987653
No 141
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=8.1e-19 Score=144.94 Aligned_cols=165 Identities=24% Similarity=0.249 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...+|.++|.+|+|||||||+|++. ....++..+-+++..... ..+..+++|||||+++....+. .....
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~------~~r~~ 110 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA------EHRQL 110 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH------HHHHH
Confidence 4457889999999999999999976 445566555444443221 2356799999999998754442 22234
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHh--hCCcEEEEEecCCCCCchH----------------HHHHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPID----------------VARRAMQIE 229 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~----------------~~~~~~~~~ 229 (269)
|...+...|++++++|+.+..-..+.+++..+.. .+.|+++++|.+|...+.. .++....+.
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 4445555999999999988777777777776644 3589999999999986520 111122222
Q ss_pred HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+.++ ...|++.+|.+.++|++.|...++..+..
T Consensus 191 ~~~q----~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 191 RLFQ----EVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHh----hcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 2222 25789999999999999999999987653
No 142
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.81 E-value=1.2e-18 Score=136.07 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=92.4
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
|+++|++|||||||+|+|.+.. . .....|.+..+.. ....+..+.+|||||... +..+...++ .
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~---~ 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-F-SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPR----------FRSMWERYC---R 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-C-CcCccCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHH---h
Confidence 7999999999999999999873 1 2222232222222 122345689999999622 122223333 3
Q ss_pred ccceEEEEEeCCCCCCcc-h-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 174 SLKRVCLLIDTKWGVKPR-D-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 174 ~~d~vl~vid~~~~~~~~-~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
.+|++++|+|+....... . ..+...+. ..++|+++|+||+|+............+. +........+++++||+
T Consensus 67 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~ 144 (159)
T cd04159 67 GVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMN--LKSITDREVSCYSISCK 144 (159)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhC--cccccCCceEEEEEEec
Confidence 389999999987421111 1 11222222 14689999999999876543322222111 01111223578999999
Q ss_pred CCCCHHHHHHHHHH
Q 024325 249 SGAGIRSLRTVLSK 262 (269)
Q Consensus 249 ~g~gi~~L~~~i~~ 262 (269)
+|.|+++++++|.+
T Consensus 145 ~~~gi~~l~~~l~~ 158 (159)
T cd04159 145 EKTNIDIVLDWLIK 158 (159)
T ss_pred cCCChHHHHHHHhh
Confidence 99999999999865
No 143
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4.1e-19 Score=150.56 Aligned_cols=161 Identities=20% Similarity=0.245 Sum_probs=112.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE----EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~----~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
-|.++|.|||||||||++++... ..+.+||+||...+.- ..+..|++-|.||+.+..+.. ..+-..|+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~FL 232 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG------VGLGLRFL 232 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC------CCccHHHH
Confidence 58999999999999999999984 7899999999886422 235679999999998763322 12334566
Q ss_pred hcccccceEEEEEeCCCCCC--c-ch-HHHHHHHHh-----hCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVK--P-RD-HELISLMER-----SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLV 239 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~--~-~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 239 (269)
++.+-+.++++|||.+..-. + .+ ..+...|.. .++|.++|+||+|+..+.+ .+...+.+.+.. ...
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~----~~~ 308 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL----GWE 308 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc----CCC
Confidence 66666999999999984322 1 11 233344443 3689999999999665543 333333333322 112
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
.+ ++|||.+++|+++|+..+.+.+...
T Consensus 309 ~~-~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 309 VF-YLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred cc-eeeehhcccCHHHHHHHHHHHHHHh
Confidence 22 2399999999999999998887654
No 144
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=2.1e-18 Score=161.07 Aligned_cols=158 Identities=24% Similarity=0.365 Sum_probs=104.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-ceeEeeEEEe---------------------CCcEEEEcCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL---------------------GTKLCLVDLPGY 148 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-tt~~~~~~~~---------------------~~~~~lvDtpG~ 148 (269)
..|.|+++|++|+|||||+|+|.+. . ..+..+| .|++...+.. -+.+.+|||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~-~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGT-A--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc-c--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 3589999999999999999999876 2 2333333 4444321110 013789999997
Q ss_pred CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--------
Q 024325 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-------- 220 (269)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-------- 220 (269)
.. +..+.. .....+|++++|+|+..++..+..+.+..+...++|+++|+||+|+.....
T Consensus 82 e~----------f~~~~~---~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~ 148 (586)
T PRK04004 82 EA----------FTNLRK---RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFL 148 (586)
T ss_pred HH----------HHHHHH---HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHH
Confidence 32 122222 223349999999999988888887888888888999999999999863211
Q ss_pred ---------HH----HHHHHHHHHHHhc------------CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 221 ---------VA----RRAMQIEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 221 ---------~~----~~~~~~~~~~~~~------------~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.. .....+...+... .....+++++||++|+|+++|++.+....
T Consensus 149 e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 149 ESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 0011111112111 01246899999999999999998886533
No 145
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.81 E-value=7.6e-19 Score=142.77 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=96.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+|+++|.+|+|||||++++++.. ...+++.+|.... ..... + ..+.+|||||... +..+...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~ 69 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHR--FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER----------YEAMSRI 69 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHh
Confidence 79999999999999999999873 2223344443321 11222 2 3467999999632 1222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHH--HHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARR--AMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~v 242 (269)
++. .+|++++|+|.....+... ..++..+... +.|+++|+||+|+......... ...+.+.... ...++
T Consensus 70 ~~~---~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~---~~~~~ 143 (193)
T cd04118 70 YYR---GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE---IKAQH 143 (193)
T ss_pred hcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH---cCCeE
Confidence 332 4899999999875322211 2344544433 5899999999998753211000 1112222221 24678
Q ss_pred EEeeCCCCCCHHHHHHHHHHhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++||++|.|+++|+++|.+.+
T Consensus 144 ~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 144 FETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 146
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=1.7e-18 Score=138.27 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-ee--EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN--FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~--~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++.+.. . ...+..|..+ .. .... ...+.+|||||... +..+...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~-f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~ 69 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS-F--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE----------FTAMRDQ 69 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-C--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh----------hHHHhHH
Confidence 479999999999999999998762 2 2222223322 11 1111 24588999999622 2333444
Q ss_pred HHhcccccceEEEEEeCCCCCCcchH-HHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
++. .+|++++|+|..+..+.... .+...+.. .++|+++|.||+|+......... ........ ...++
T Consensus 70 ~~~---~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~--~~~~~a~~---~~~~~ 141 (172)
T cd04141 70 YMR---CGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE--EGRNLARE---FNCPF 141 (172)
T ss_pred Hhh---cCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHH--HHHHHHHH---hCCEE
Confidence 443 38999999998764433332 23333432 35899999999998653222111 11111111 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 142 ~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 142 FETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred EEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 147
>PRK12735 elongation factor Tu; Reviewed
Probab=99.81 E-value=1.9e-18 Score=155.17 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=114.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC------cCcc--------ccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ------WGVV--------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~------~~~~--------~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~ 153 (269)
+..+|+++|++++|||||+++|++. .... ......|+|.+..... .+..+.|+||||+
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh----- 85 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH----- 85 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH-----
Confidence 3468999999999999999999862 0100 0112467777764333 3567999999996
Q ss_pred hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCCchHH-HHHHHHHHHH
Q 024325 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIEES 231 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~~~~~-~~~~~~~~~~ 231 (269)
..+.......+..+|.+++|+|+..+...++.+++..+...++|.+ +|+||+|+.+..+. ......+...
T Consensus 86 --------~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 86 --------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 2344555566667999999999998877777788888888889966 57999999854332 2223345555
Q ss_pred HHhcCC--CCCCeEEeeCCCCC----------CHHHHHHHHHHhh
Q 024325 232 LKANNS--LVQPVMMVSSKSGA----------GIRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~~--~~~~vi~vSa~~g~----------gi~~L~~~i~~~~ 264 (269)
+..+.. ...|++++||++|. |+..|++.|...+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 544322 24789999999984 7889998887754
No 148
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.80 E-value=2.4e-18 Score=135.22 Aligned_cols=151 Identities=19% Similarity=0.178 Sum_probs=93.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||+|++++.. .. ....+.++.+.. ... ....+.+|||||.. .+..+...+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~ 69 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK-FN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGPIY 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhHHH
Confidence 69999999999999999999872 22 122222222221 111 12358899999952 122333333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+. .+|++++|+|.+++..... ..++..+.. .++|+++|+||+|+........ ..+.+.... ...++++
T Consensus 70 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~~---~~~~~~~ 141 (162)
T cd04123 70 YR---DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK--SEAEEYAKS---VGAKHFE 141 (162)
T ss_pred hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--HHHHHHHHH---cCCEEEE
Confidence 32 4899999999875322211 123333332 2589999999999975432111 111111211 2467899
Q ss_pred eeCCCCCCHHHHHHHHHHhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~ 264 (269)
+||++|.|+++++++|.+.+
T Consensus 142 ~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 142 TSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 149
>PLN03110 Rab GTPase; Provisional
Probab=99.80 E-value=2.4e-18 Score=142.47 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=98.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..+|+++|++|+|||||+++|.+.. . .....+....+. ..... ...+.+|||||.. .+..+..
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~-~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~----------~~~~~~~ 79 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNE-F-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAITS 79 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHH
Confidence 4689999999999999999999873 2 222223222232 11222 3478999999952 2233444
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (269)
.++. .++++++|+|......... ..++..+.. .+.|+++|+||+|+....... +....+.. . ...+
T Consensus 80 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~---~---~~~~ 150 (216)
T PLN03110 80 AYYR---GAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE---K---EGLS 150 (216)
T ss_pred HHhC---CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH---H---cCCE
Confidence 4444 3899999999875322222 234444443 368999999999986533221 11222221 1 2478
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++++|...+.
T Consensus 151 ~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 151 FLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987664
No 150
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.80 E-value=1.3e-18 Score=157.59 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=114.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccc--cCCCCCceeEeeEE----------------------------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFF---------------------------------- 134 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~--~s~~~gtt~~~~~~---------------------------------- 134 (269)
...+|+++|+..+|||||+.+|++.. ... -.-..|.|-+.-|.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~-~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK-TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC-cccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999852 111 11112223222111
Q ss_pred --EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcchHHHHHHHHhhCC-cEEEEE
Q 024325 135 --KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVL 210 (269)
Q Consensus 135 --~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~~~~~~~~~~~l~~~~~-p~iiv~ 210 (269)
.....+.|+||||+ ..+.......+..+|.+++|+|+..+ ...+..+.+..+...++ |+++|+
T Consensus 112 ~~~~~~~i~~IDtPGH-------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred cccccceEeeeeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 01236899999996 34555666666679999999999875 56666666666666666 588999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 211 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 211 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
||+|+.+.....+..+.+.+.+........|++++||++|.|++.|++.|.+.+.
T Consensus 179 NKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 179 NKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred ecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 9999997666666666666655443344689999999999999999999986543
No 151
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=1.3e-18 Score=142.07 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=94.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|.+|+|||||++++++.. ....+..++.+. .+...+ ..+.+|||||.... ..+...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT---FEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF----------PAMRKLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCccCCCchhhheeEEEEECCEEEEEEEEECCCchhh----------hHHHHHH
Confidence 48999999999999999999872 233343343322 111122 46889999996321 2222223
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+ ..+|++++|+|..+..+... ..++..+. ..++|+++|+||+|+.......... ...+.... ....+++
T Consensus 68 ~---~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~-~~~~~~~~--~~~~~~~ 141 (198)
T cd04147 68 I---QNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAK-DALSTVEL--DWNCGFV 141 (198)
T ss_pred h---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHH-HHHHHHHh--hcCCcEE
Confidence 2 34999999999875322221 12222222 2468999999999997531111111 11111110 1246789
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 142 ~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 142 ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999988654
No 152
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=148.70 Aligned_cols=180 Identities=33% Similarity=0.485 Sum_probs=140.7
Q ss_pred cCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCC-CCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325 84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (269)
Q Consensus 84 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~ 162 (269)
....|+...|++++.|.+|+|||||||.++........+. .+|-|+.++.+..+..+.++|.||++.+.-..+....|.
T Consensus 128 ~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 128 AEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred eccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHh
Confidence 3556667789999999999999999999998755555555 899999999999999999999999766543444456678
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHH----HHHHHHhcC
Q 024325 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQ----IEESLKANN 236 (269)
Q Consensus 163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~----~~~~~~~~~ 236 (269)
.+...|+..+++.-.+++++|++-++++.|...++++.++++|+.+|+||||...... ..+.... +....+...
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f 287 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF 287 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence 8999999988888899999999999999999999999999999999999999875322 1111111 111111111
Q ss_pred CCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 237 SLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
.-..|++.+|+.++.|++.|+-.|...
T Consensus 288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 288 LVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eccCCceeeecccccCceeeeeehhhh
Confidence 224678899999999999998666543
No 153
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.80 E-value=1.6e-18 Score=138.90 Aligned_cols=153 Identities=12% Similarity=0.004 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-e--EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N--FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~--~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++.... +..++.+|..+. . .... ...+.+|||||.... ..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~---f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK---FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccch----------hhhhhh
Confidence 579999999999999999999762 334444444332 1 1111 246789999997321 122222
Q ss_pred HHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK 233 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~ 233 (269)
++ ..+|++++|+|.++..+.... .++..+.. .+.|+++|.||+|+....+..... +...+...
T Consensus 69 ~~---~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~ 145 (175)
T cd01874 69 SY---PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR 145 (175)
T ss_pred hc---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH
Confidence 33 248999999998754333222 24444443 268999999999986543221111 01111111
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
.. ...+++++||++|.|++++++.+...
T Consensus 146 ~~--~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 146 DL--KAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred Hh--CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 11 12579999999999999999988764
No 154
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.80 E-value=3.3e-18 Score=137.89 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=93.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+|+++|.+|+|||||++++++.. +...+..|. .+. ..... ...+.+|||+|... +..+...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~---f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~~~~~ 68 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE---FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE----------FINMLPL 68 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh----------HHHhhHH
Confidence 69999999999999999998762 223332222 222 11121 24588999999622 1223333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCch---HHHHHHHHHHHHHHhcCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI---DVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~ 240 (269)
++ ..+|++++|+|.++..+..+ ..++..+.. ...| ++|+||+|+.... +.........+.... ...
T Consensus 69 ~~---~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~---~~~ 141 (182)
T cd04128 69 VC---NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA---MKA 141 (182)
T ss_pred HC---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH---cCC
Confidence 33 34999999999875432222 134444433 2356 6889999996321 111111122222121 246
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++++||++|.|+++++++|.+.+-.
T Consensus 142 ~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 142 PLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999876644
No 155
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=1.6e-18 Score=140.04 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=94.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+|+++|.+|+|||||++++++.. ....+.+++ .+.. .... ...+.+|||||... +..+...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~---~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK---FPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE----------YDRLRPL 68 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc---CCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh----------HHHHHHH
Confidence 79999999999999999999873 223333332 2221 1111 23578999999621 1222222
Q ss_pred HHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchHHHH--HHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDVAR--RAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~ 241 (269)
+ ...+|++++|+|.++..+.... .++..+.. .+.|+++|+||+|+........ ......+...... ..+
T Consensus 69 ~---~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--~~~ 143 (187)
T cd04132 69 S---YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG--AFA 143 (187)
T ss_pred h---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC--CcE
Confidence 2 3359999999998753322221 23333332 3689999999999875321000 0011111111111 237
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++|.|++++++.+.+.+..
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999877644
No 156
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.80 E-value=2.1e-18 Score=143.10 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=97.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE-E--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-K--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~-~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+|||||+++++.........+..|++...... . ....+.+|||||... +..+...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 81 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDG 81 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhhhHH
Confidence 34699999999999999999987652212223333333222111 1 235789999999632 1233333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
|+. .++++++|+|.+...+... ..++..+.. .+.|+++|+||+|+........ .+ +... ....++++
T Consensus 82 ~~~---~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~---~~-~~~~---~~~~~~~e 151 (219)
T PLN03071 82 YYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV-TFHR---KKNLQYYE 151 (219)
T ss_pred Hcc---cccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHH---HH-HHHH---hcCCEEEE
Confidence 333 3899999999885432221 233333332 3689999999999864321111 11 1111 12467899
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||++|.|+++++++|.+.+.
T Consensus 152 ~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 152 ISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987663
No 157
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.80 E-value=1.5e-18 Score=137.94 Aligned_cols=152 Identities=14% Similarity=0.036 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---E--EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---F--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~--~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|+|||||+++|++.. . .....++..+.. . ......+.+|||||.... ..+...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK-F--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-C--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccchh
Confidence 379999999999999999999873 2 122222222211 1 112346889999997432 111111
Q ss_pred HHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHH---------HHHHHHHHHh
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDVARR---------AMQIEESLKA 234 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~---------~~~~~~~~~~ 234 (269)
+ ...+|++++|+|+.+..+.. ...++..+... +.|+++|+||+|+..+...... .....+....
T Consensus 68 ~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 68 S---YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred h---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 1 23489999999987532221 12344444433 4899999999999876533210 1111222222
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~ 262 (269)
.. ..+++++||++|.|+++++++|.+
T Consensus 145 ~~--~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 IG--AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hC--CeEEEEeecCCCCCHHHHHHHHhh
Confidence 11 238999999999999999999875
No 158
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.80 E-value=2.8e-18 Score=140.32 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=97.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.|+++|..|+|||||++++.... +...++.| +.+... ... ...+.+|||+|.. .+..+...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~---f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe----------~~~~l~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT---FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC---CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch----------hhHHHHHH
Confidence 58999999999999999998762 23333322 223321 111 2568899999962 22344445
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
|++. +|++++|+|.++..+... ..++..+.. .+.|+++|.||+|+....+.... ...+..... ...+++
T Consensus 69 y~~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~--~~~~~a~~~--~~~~~~ 141 (202)
T cd04120 69 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQ--QGEKFAQQI--TGMRFC 141 (202)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH--HHHHHHHhc--CCCEEE
Confidence 5444 999999999885433222 233444443 35899999999999653322211 111111111 136789
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+||++|.|++++|++|.+.+.
T Consensus 142 etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 142 EASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 159
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.80 E-value=4.5e-18 Score=137.79 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-CceeEeeE--EE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-gtt~~~~~--~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..+|+++|..|+|||||+.++.... +..+++ ..+.+... .. ....+.+|||||.. .+..+.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~---~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l~ 72 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGS---TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTIF 72 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 4689999999999999999999762 222222 22233221 11 12568899999962 223344
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
..|.. .+|++++|+|.....+... ..+++.+.. .+.|+++|.||+|+....... ....+..... ...++
T Consensus 73 ~~~~~---~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~--~~~~~~~a~~---~~~~~ 144 (189)
T cd04121 73 RSYSR---GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA--TEQAQAYAER---NGMTF 144 (189)
T ss_pred HHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC--HHHHHHHHHH---cCCEE
Confidence 44443 4999999999875433222 234444443 368999999999996432111 1111121221 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|++++|++|.+.+.
T Consensus 145 ~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 145 FEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987553
No 160
>PLN03127 Elongation factor Tu; Provisional
Probab=99.80 E-value=4.2e-18 Score=154.50 Aligned_cols=161 Identities=20% Similarity=0.241 Sum_probs=112.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc-----Cccc---------cCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVR---------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~---------~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~ 153 (269)
...+|+++|++++|||||+++|++.. .... ....+|+|.+..... .+..+.|+||||+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 45789999999999999999997320 1011 122378888875433 355799999999832
Q ss_pred hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHHH-HHHHHHH
Q 024325 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARR-AMQIEES 231 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~~-~~~~~~~ 231 (269)
++.........+|++++|+|+..+...++.+++..+...++| +++|+||+|+.+..+..+. ...+.+.
T Consensus 137 ----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~ 206 (447)
T PLN03127 137 ----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELREL 206 (447)
T ss_pred ----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 233333344459999999999988888889999999989999 5789999999864443332 2344444
Q ss_pred HHhcC--CCCCCeEEeeCC---CCCC-------HHHHHHHHHHhh
Q 024325 232 LKANN--SLVQPVMMVSSK---SGAG-------IRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~--~~~~~vi~vSa~---~g~g-------i~~L~~~i~~~~ 264 (269)
+.... ....|++++||. +|.| +..|++.|...+
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 43321 224788999886 5555 788888887764
No 161
>PRK00049 elongation factor Tu; Reviewed
Probab=99.79 E-value=4.6e-18 Score=152.69 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=116.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC-----ccc---------cCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VVR---------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-----~~~---------~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~ 153 (269)
...+|+++|++++|||||+++|++... ... .....|+|.+..... .+..+.++||||+
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~----- 85 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH----- 85 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH-----
Confidence 346899999999999999999987310 000 111567887765433 2567999999996
Q ss_pred hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCCchHH-HHHHHHHHHH
Q 024325 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIEES 231 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~~~~~-~~~~~~~~~~ 231 (269)
..+.......+..+|++++|+|+..+...++.+++..+...++|.+ +++||+|+.+..+. ......+...
T Consensus 86 --------~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 86 --------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 2344555566677999999999998888888889998888899976 58999999864332 2233455555
Q ss_pred HHhcC--CCCCCeEEeeCCCCC----------CHHHHHHHHHHhh
Q 024325 232 LKANN--SLVQPVMMVSSKSGA----------GIRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~--~~~~~vi~vSa~~g~----------gi~~L~~~i~~~~ 264 (269)
+.... ....|++++||++|. |+..|++.|...+
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 54432 235789999999975 6788888887654
No 162
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=6.5e-18 Score=136.79 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccc-cCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~-~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
++|+++|.+|+|||||++++.+. .... ..+..+.+........ ...+.+|||||... +..+...+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~~~ 69 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTED-EFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER----------FRSLNNSY 69 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHhhHHHH
Confidence 37999999999999999999987 2211 1222222222222222 23578999999621 12222333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi 243 (269)
+ ..+|++++|+|.+...+... ..++..+.. ...|+++|+||+|+....... .....+. .. ...+++
T Consensus 70 ~---~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~---~~---~~~~~~ 140 (188)
T cd04125 70 Y---RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC---DS---LNIPFF 140 (188)
T ss_pred c---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH---HH---cCCeEE
Confidence 3 34999999999875322111 123333333 247899999999987432211 1111111 11 135899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 141 evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 141 ETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 163
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.79 E-value=3.2e-18 Score=141.63 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=94.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE-EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
+|+++|.+|+|||||+++++.. ... ...+.+..+.... .....+.+|||||... +..+...|+.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~-~f~--~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~-- 66 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMER-RFK--DTVSTVGGAFYLKQWGPYNISIWDTAGREQ----------FHGLGSMYCR-- 66 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcC-CCC--CCCCccceEEEEEEeeEEEEEEEeCCCccc----------chhhHHHHhc--
Confidence 6899999999999999999987 322 2222222222211 1245689999999632 1233334433
Q ss_pred cccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchH----------------HHH-HHHHHHHH
Q 024325 173 VSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID----------------VAR-RAMQIEES 231 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~----------------~~~-~~~~~~~~ 231 (269)
.+|++++|+|.+...+... ..+...... .+.|+++|.||+|+..... ... ..+.....
T Consensus 67 -~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 67 -GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 4999999999885432222 122222222 3579999999999975100 000 00111111
Q ss_pred HHhcCC-----------CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 232 LKANNS-----------LVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 232 ~~~~~~-----------~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
...... ...+++++||++|.|+++++..+.+.+.
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111110 1257999999999999999999987653
No 164
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=3.7e-18 Score=138.42 Aligned_cols=155 Identities=16% Similarity=0.085 Sum_probs=95.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee-EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~-~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|.+|+|||||++++++.. . ...+.+|. .+.. ... ....+.+|||||.... ..+...+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~-~--~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~----------~~l~~~~ 68 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGY-F--PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF----------DRLRSLS 68 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-C--CCccCCcceeeeEEEEEECCEEEEEEEEECCCChhc----------ccccccc
Confidence 69999999999999999999872 2 22222222 1111 111 1346899999996321 1122222
Q ss_pred HhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHHh
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLKA 234 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~~ 234 (269)
...+|++++|+|.....+... ..++..+.. .+.|+++|.||+|+.......... ....+....
T Consensus 69 ---~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (189)
T cd04134 69 ---YADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR 145 (189)
T ss_pred ---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 234899999998875322222 234444443 268999999999997654322111 011111111
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
. ...+++++||++|.|+++++.+|.+.+..
T Consensus 146 ~--~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 146 I--NALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred c--CCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 1 13578999999999999999999887643
No 165
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.79 E-value=2e-18 Score=137.23 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|+|||||++++.+.. ....+.+++.+. ..... ...+.+|||||... +..+.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV---FIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----------FTAMREL 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEeCCCccc----------chhhhHH
Confidence 479999999999999999999762 223333333322 11111 24678999999633 1233333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~ 241 (269)
++.. ++.+++|+|.+....... ..+...+. ..+.|+++|+||+|+........ ....+. ... ...+
T Consensus 69 ~~~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~---~~~--~~~~ 140 (168)
T cd04177 69 YIKS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS---QQW--GNVP 140 (168)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH---HHc--CCce
Confidence 3333 889999999874322111 12222222 24689999999999975432211 111111 111 1368
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++++||++|.|+++++++|...+
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 166
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.79 E-value=1.8e-18 Score=164.06 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=102.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCcccc----------CCCCCc----------------------eeEeeE---EE
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----------SDKPGL----------------------TQTINF---FK 135 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~----------s~~~gt----------------------t~~~~~---~~ 135 (269)
..++|+++|++|+|||||+|+|+.... ..+ +...|+ |.+..+ ..
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 346899999999999999999997522 222 112333 333322 12
Q ss_pred eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCC
Q 024325 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTD 214 (269)
Q Consensus 136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~D 214 (269)
.+..+.|+||||+. .+..........+|++++|+|+..+...++.+.+..+...+ .|+++|+||+|
T Consensus 102 ~~~~~~liDtPG~~-------------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHE-------------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChH-------------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 35679999999962 22233334455699999999999888888777777777666 46889999999
Q ss_pred CCCc--hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325 215 TVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 215 l~~~--~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~ 255 (269)
+.+. .........+.+.+........+++++||++|.|+++
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9852 2233333444444433322346799999999999984
No 167
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=2.8e-18 Score=134.59 Aligned_cols=149 Identities=14% Similarity=0.085 Sum_probs=95.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||++++++.. ..+.+.+++.+... ... ...+.+||+||... +..+...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 48999999999999999999872 44555555544321 112 34688999999632 12222333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+. .+|++++|+|........+ ..+...+.. ...|+++|+||+|+....... .+......... ..+++
T Consensus 68 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~ 139 (160)
T cd00876 68 IR---QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGKALAKEW---GCPFI 139 (160)
T ss_pred Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHHHHHHHc---CCcEE
Confidence 33 3899999999875322111 122222222 368999999999998632211 11222222221 36899
Q ss_pred EeeCCCCCCHHHHHHHHHHh
Q 024325 244 MVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~ 263 (269)
++||++|.|+++++++|.+.
T Consensus 140 ~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 140 ETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EeccCCCCCHHHHHHHHHhh
Confidence 99999999999999999865
No 168
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.79 E-value=8.6e-18 Score=132.74 Aligned_cols=149 Identities=15% Similarity=0.209 Sum_probs=93.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||++++++.. . .....|....+.. .... ...+.+|||||... +..+...+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~ 69 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE-F-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER----------YQTITKQY 69 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-C-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh----------HHhhHHHH
Confidence 69999999999999999998762 2 1222222222221 1111 24578999999521 12333333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi 243 (269)
.. .+|++++|+|..+.-+... ..++..+.. .+.|+++|.||+|+....... .....+.+ . ...+++
T Consensus 70 ~~---~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~---~---~~~~~~ 140 (161)
T cd04117 70 YR---RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAK---E---YGMDFF 140 (161)
T ss_pred hc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH---H---cCCEEE
Confidence 33 4899999999875322111 233333322 257999999999997543221 11222221 1 236789
Q ss_pred EeeCCCCCCHHHHHHHHHHh
Q 024325 244 MVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~ 263 (269)
++||++|.|+++++.+|.+.
T Consensus 141 e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 141 ETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999764
No 169
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.79 E-value=3.1e-18 Score=137.06 Aligned_cols=153 Identities=14% Similarity=0.019 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||+.+++... +...+..|..+. .... ....+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRPL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC---CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhh
Confidence 479999999999999999998762 233333333222 1111 124688999999622 1222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchH-HHHH---------HHHHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPID-VARR---------AMQIEESLK 233 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~-~~~~---------~~~~~~~~~ 233 (269)
++ ..+|++++|+|.++..+.... .++..+.. .+.|+++|.||+|+.+... .... .+...+...
T Consensus 69 ~~---~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 145 (174)
T cd01871 69 SY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 145 (174)
T ss_pred hc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 33 349999999999754322221 24443433 2589999999999964321 1000 011111111
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
.. ...+++++||++|+|++++++.+.+.
T Consensus 146 ~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 146 EI--GAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred Hc--CCcEEEEecccccCCHHHHHHHHHHh
Confidence 11 12478999999999999999998753
No 170
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.8e-18 Score=151.47 Aligned_cols=159 Identities=20% Similarity=0.289 Sum_probs=119.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe------CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~------~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
..|.|+++|+...|||||+..+.+. .+ .....-|.|+++--+.. .+.+.|+||||+ ..+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t-~V-a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-------------eAF 68 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKT-NV-AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-------------EAF 68 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcC-cc-ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH-------------HHH
Confidence 3589999999999999999999987 33 33445568888743322 368999999996 233
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCCCe
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPV 242 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~v 242 (269)
...-.+...-+|.+++|+|+.+++.++..+-++.++..++|+++++||+|+++.. ..+....+.+. ..+.+.....+
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~ 147 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIF 147 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEE
Confidence 3333355666999999999999999999999999999999999999999999542 23333333221 11112334678
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|+|+++|++.|.-..+
T Consensus 148 VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 148 VPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred EEeeccCCCCHHHHHHHHHHHHH
Confidence 99999999999999998876543
No 171
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=7.1e-18 Score=151.57 Aligned_cols=158 Identities=21% Similarity=0.277 Sum_probs=110.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc-----Ccc---------ccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~---------~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~ 154 (269)
..+|+++|+.++|||||+++|++.. ... ......|+|.+...... +..+.+|||||+
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh------ 85 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH------ 85 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch------
Confidence 4689999999999999999998420 000 01123678877644332 456999999997
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCCchHHHH-HHHHHHHHH
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVAR-RAMQIEESL 232 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~~~~~~~-~~~~~~~~~ 232 (269)
..+...+......+|.+++|+|+..+...++.+++..+...++|.+ +|+||+|+.+..+..+ ....+...+
T Consensus 86 -------~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l 158 (394)
T TIGR00485 86 -------ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred -------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 2334455556667999999999998888888888888888888866 6899999986544322 233555555
Q ss_pred HhcCC--CCCCeEEeeCCCCC--------CHHHHHHHHHH
Q 024325 233 KANNS--LVQPVMMVSSKSGA--------GIRSLRTVLSK 262 (269)
Q Consensus 233 ~~~~~--~~~~vi~vSa~~g~--------gi~~L~~~i~~ 262 (269)
..... ...|++++||++|. ++..|++.|..
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 159 SEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred HhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 54322 23789999999885 34566666554
No 172
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.78 E-value=5.2e-18 Score=136.21 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-----eeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-----~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++++.. .+..+++++.+ ......+..+.+|||||... +..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH---FVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILPQK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHHHH
Confidence 379999999999999999999762 23333333322 11111234578999999632 1122222
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHH-H---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
+.. .++.+++++|.+....... ..+...+ . ..+.|+++|+||+|+........ ......... ...++
T Consensus 69 ~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 140 (180)
T cd04137 69 YSI---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST--EEGKELAES---WGAAF 140 (180)
T ss_pred HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH--HHHHHHHHH---cCCeE
Confidence 222 3899999999875322111 1222222 2 23679999999999874322211 111111221 23689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++||++|.|+++++.+|.+.+..
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 141 LESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 173
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.78 E-value=3e-18 Score=136.77 Aligned_cols=152 Identities=16% Similarity=0.016 Sum_probs=92.9
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
|+++|.+|+|||||++++++.. +...+..+..+.. .... ...+.+|||||.... ..+...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~- 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA---FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY----------DRLRPLS- 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC---CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc----------chhchhh-
Confidence 5899999999999999999872 2223222332211 1111 235889999996321 1122222
Q ss_pred hcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHH-H---------HHHHHHHHHhc
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVAR-R---------AMQIEESLKAN 235 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~-~---------~~~~~~~~~~~ 235 (269)
...+|++++|+|.....+... ..++..+.. .+.|+++|.||+|+........ . .+.........
T Consensus 67 --~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 67 --YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred --cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 234899999999875322221 124444443 3689999999999975322110 0 01111111111
Q ss_pred CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
...+++++||++|.|++++++.|.+.+
T Consensus 145 --~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 145 --GAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred --CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 124789999999999999999998765
No 174
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=3.3e-18 Score=136.26 Aligned_cols=155 Identities=19% Similarity=0.126 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e--eEEE-eC--CcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~--~~~~-~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
+.++|+++|.+|+|||||++++++. ... +..+.+|+.. . .... .+ ..+.+|||+|.... ..+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~-~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~ 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGR-SFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA----------ILL 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCC-CCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc----------ccc
Confidence 4578999999999999999999987 221 2444444432 1 1111 23 35789999996432 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH-hhCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~-~~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (269)
...|+ ..+|++++|+|++...+... ..+++.+. ..++|+++|+||+|+.+.... ....+.+.+.+ . ..+
T Consensus 71 ~~~~~---~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~----~-~~~ 142 (169)
T cd01892 71 NDAEL---AACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKL----G-LPP 142 (169)
T ss_pred chhhh---hcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHc----C-CCC
Confidence 22222 23999999999875311111 12333221 136899999999999643221 01112222211 1 124
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|++++++.|.+.+.
T Consensus 143 ~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 143 PLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CEEEEeccCccHHHHHHHHHHHhh
Confidence 689999999999999999987653
No 175
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.78 E-value=5.5e-18 Score=142.79 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=95.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|.+|+|||||++++++.. +...+.+|+.+.. .+.. ...+.+|||+|... +..+...+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~---f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~~~ 68 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR---FEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRRLS 68 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC---CCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHHHH
Confidence 69999999999999999998762 2334444554432 1122 24678999999632 11222222
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 235 (269)
+ ..+|++++|+|.++..+... ..+++.+.. .+.|+++|+||+|+....... ...+.+.+...
T Consensus 69 ~---~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~--~~ei~~~~~~~ 143 (247)
T cd04143 69 I---LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ--RDEVEQLVGGD 143 (247)
T ss_pred h---ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC--HHHHHHHHHhc
Confidence 2 23899999999875322111 223333321 258999999999997422111 12222222211
Q ss_pred CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
...+++++||++|.|+++++++|...+
T Consensus 144 --~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 144 --ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred --CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 145789999999999999999998765
No 176
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=1.4e-17 Score=132.64 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|++|+|||||++++++.. . .....+....+.. ... ....+.+|||||... . ...+...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~---~~~~~~~ 71 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-F-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER------F---RKSMVQH 71 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHH------H---HHhhHHH
Confidence 589999999999999999998762 1 1111222222221 111 124688999999521 0 0122333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (269)
+. ..+|++++|+|...+..... ..++..+.. .++|+++|+||+|+....... ...+.+. .. ...+
T Consensus 72 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~~---~~~~ 142 (170)
T cd04115 72 YY---RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA---DA---HSMP 142 (170)
T ss_pred hh---cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH---HH---cCCc
Confidence 33 34899999999975433222 233333333 358999999999986543221 1111221 11 2478
Q ss_pred eEEeeCCC---CCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKS---GAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~---g~gi~~L~~~i~~~~~ 265 (269)
++++||++ +.|+++++..+.+.++
T Consensus 143 ~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 143 LFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred EEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 99999999 8999999998877653
No 177
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.78 E-value=4.6e-18 Score=153.14 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccc-------------cC------------------CCCCceeEeeEEE---eCCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTINFFK---LGTK 139 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~-------------~s------------------~~~gtt~~~~~~~---~~~~ 139 (269)
+|+++|++++|||||+++|+...+... .+ ...|.|.+..+.. .+..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 699999999999999999875421100 00 1234455554332 3567
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCCCCc
Q 024325 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFP 218 (269)
Q Consensus 140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~ 218 (269)
+.++||||+ ..+.......+..+|++++|+|+..+...++.+.+..+...++ ++++|+||+|+...
T Consensus 82 ~~liDtPGh-------------~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 82 FIVADTPGH-------------EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY 148 (406)
T ss_pred EEEEeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccc
Confidence 999999996 2233333344556999999999999888888877777777666 48889999999753
Q ss_pred hH--HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325 219 ID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 219 ~~--~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~ 255 (269)
.. .......+...+........+++++||++|+|+++
T Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 21 22233344433333322346899999999999986
No 178
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=6.7e-18 Score=139.31 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=95.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EE--eC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK--LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~--~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.+|+++|.+|+|||||++++++. ..... ..+.++.+... .. .+ ..+.+|||||.. .+..+..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~-~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEG-RFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE----------RFRSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC-CCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch----------hHHHHHH
Confidence 58999999999999999999987 32222 12222233211 11 12 358899999962 2233334
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (269)
.++. .+|++++|+|.++..+... ..++..+.. ...|+++|.||+|+....... .....+.+ . ...
T Consensus 71 ~~~~---~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~---~---~~~ 141 (211)
T cd04111 71 SYYR---NSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK---D---LGM 141 (211)
T ss_pred HHhc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH---H---hCC
Confidence 4443 3899999999875322111 123333322 246789999999997632221 11122221 1 137
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++++||++|+|+++++++|.+.+.
T Consensus 142 ~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 142 KYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 179
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.78 E-value=9.8e-18 Score=152.24 Aligned_cols=152 Identities=20% Similarity=0.293 Sum_probs=101.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc-c----------------------c------cCCCCCceeEeeEEE---eCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V----------------------R------TSDKPGLTQTINFFK---LGT 138 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-~----------------------~------~s~~~gtt~~~~~~~---~~~ 138 (269)
...+|+++|++++|||||+++|+..... . . .....|+|.+..+.. .+.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 4568999999999999999999853110 0 0 012457787775443 356
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC---CCcchHHHHHHHHhhC-CcEEEEEecCC
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQ-TKYQVVLTKTD 214 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~---~~~~~~~~~~~l~~~~-~p~iiv~NK~D 214 (269)
.+.+|||||+ ..+...+......+|++++|+|++.+ ...+..+.+..+...+ .|+++|+||+|
T Consensus 86 ~i~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~D 152 (426)
T TIGR00483 86 EVTIVDCPGH-------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMD 152 (426)
T ss_pred EEEEEECCCH-------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChh
Confidence 7999999996 22334444455669999999999876 4444444444444444 46899999999
Q ss_pred CCCc--hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325 215 TVFP--IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 215 l~~~--~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~ 255 (269)
+.+. .........+.+.+..... ...+++++||++|+|+++
T Consensus 153 l~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 153 SVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9742 2333334455555443321 246899999999999986
No 180
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.78 E-value=4.8e-18 Score=134.53 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=92.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|.+|+|||||+++++.. .+...+++++... ..... ...+.+|||||...... .....+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK---RFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---------EQLERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhC---ccccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc---------chHHHH
Confidence 4899999999999999999875 2234444443221 11111 23578999999753100 011122
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
+. .+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+........ ......... ...++
T Consensus 69 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~ 140 (165)
T cd04146 69 IR---WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST--EEGEKLASE---LGCLF 140 (165)
T ss_pred HH---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH--HHHHHHHHH---cCCEE
Confidence 22 3899999999975422221 223333332 3689999999999854321111 111111111 13689
Q ss_pred EEeeCCCCC-CHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGA-GIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~-gi~~L~~~i~~~~~ 265 (269)
+++||++|. |++++++.|.+.+.
T Consensus 141 ~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 141 FEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred EEeCCCCCchhHHHHHHHHHHHHh
Confidence 999999995 99999999987653
No 181
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.78 E-value=4.8e-18 Score=136.14 Aligned_cols=153 Identities=17% Similarity=0.056 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||+.+++... +...+..|..+.. .. .....+.+|||+|... +..+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~---f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK---FPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRPL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC---CCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccchh
Confidence 479999999999999999999762 2333333332211 11 1135688999999632 2233333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHH--------HHHHHHHHHHHHhc
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDV--------ARRAMQIEESLKAN 235 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~ 235 (269)
+++ .++++++|+|..+..+... ..++..+.. .+.|+++|.||+|+.+.... .-..+...+....
T Consensus 69 ~~~---~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~- 144 (176)
T cd04133 69 SYR---GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ- 144 (176)
T ss_pred hcC---CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH-
Confidence 333 4999999999875444333 235555543 36899999999999643210 0001111111111
Q ss_pred CCCCC-CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 236 NSLVQ-PVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 236 ~~~~~-~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
... +++++||++|.|++++++.+.+.+
T Consensus 145 --~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 145 --IGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred --cCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 133 689999999999999999998865
No 182
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.78 E-value=1.1e-17 Score=133.50 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|++|+|||||++++.+.. +...+.++..+. .+. .....+.+|||||.... ..+...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ---FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY----------DRLRPL 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhh----------hhcccc
Confidence 479999999999999999999862 222232232221 111 12345789999996321 111111
Q ss_pred HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK 233 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~ 233 (269)
....+|++++|+|.....+... ..++..+.. .+.|+++|+||+|+.......... ...++...
T Consensus 69 ---~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 69 ---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred ---ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 2345899999998864321111 123333433 368999999999987543221111 01111111
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.. ...+++++||++|.|+++++++|.+.+
T Consensus 146 ~~--~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 146 KI--GAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred Hc--CCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 11 134789999999999999999998654
No 183
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.78 E-value=8.9e-18 Score=157.28 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=103.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCc-------cccC------CCCCceeEeeEE---Ee--C---CcEEEEcCCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTINFF---KL--G---TKLCLVDLPGYGF 150 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~-------~~~s------~~~gtt~~~~~~---~~--~---~~~~lvDtpG~~~ 150 (269)
..+++++|++++|||||+++|+..... ..+. ...|.|.+.... +. + ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 348999999999999999999864210 0011 123555443211 11 2 5689999999832
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
+......++ ..+|++++|+|++.+...++...+..+...++|+++|+||+|+.... .....+.+.+
T Consensus 83 ----------F~~~v~~~l---~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~ 148 (595)
T TIGR01393 83 ----------FSYEVSRSL---AACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEE 148 (595)
T ss_pred ----------HHHHHHHHH---HhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHH
Confidence 112222333 34999999999998777766555555555689999999999986432 2222233333
Q ss_pred HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+. ....+++++||++|.|+++|+++|.+.+.
T Consensus 149 ~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 149 VIG---LDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HhC---CCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 221 11235899999999999999999988764
No 184
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.77 E-value=1.1e-17 Score=133.49 Aligned_cols=153 Identities=13% Similarity=0.019 Sum_probs=93.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||++++++.. +...+.++..+.. .... ...+.+|||||.... ..+...+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 68 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLRPLS 68 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------ccccccc
Confidence 79999999999999999999872 2333333433321 1111 234779999996432 1111111
Q ss_pred HhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHHh
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLKA 234 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~~ 234 (269)
...+|++++|+|..+.....+ ..++..+.. .+.|+++|+||+|+.+........ .........
T Consensus 69 ---~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (174)
T cd04135 69 ---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE 145 (174)
T ss_pred ---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 234899999999875322222 234444433 468999999999986543211100 111111121
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
. ...+++++||++|.|++++++.+.+.+
T Consensus 146 ~--~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 146 I--GAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred c--CCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 1 124689999999999999999987653
No 185
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=5.6e-18 Score=134.27 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=91.8
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (269)
|+++|.+|+|||||++++++........+..|.. .......+..+.+|||||.... ..+...++. .
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~---~ 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-SVAIPTQDAIMELLEIGGSQNL----------RKYWKRYLS---G 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-eEEEeeCCeEEEEEECCCCcch----------hHHHHHHHh---h
Confidence 7899999999999999999863111111222211 1122233567899999996321 122223333 3
Q ss_pred cceEEEEEeCCCCCCcch-HHHHHHH-Hh-hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC--
Q 024325 175 LKRVCLLIDTKWGVKPRD-HELISLM-ER-SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS-- 249 (269)
Q Consensus 175 ~d~vl~vid~~~~~~~~~-~~~~~~l-~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~-- 249 (269)
+|++++|+|+++...... ..++..+ .. .++|+++|.||+|+............+.- .........+++++||++
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~Sa~~~~ 146 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELEL-EPIARGRRWILQGTSLDDDG 146 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCC-hhhcCCCceEEEEeeecCCC
Confidence 999999999875321111 1222222 22 46899999999999765433322222110 001112346688898888
Q ss_pred ----CCCHHHHHHHHHH
Q 024325 250 ----GAGIRSLRTVLSK 262 (269)
Q Consensus 250 ----g~gi~~L~~~i~~ 262 (269)
++|++++++.+..
T Consensus 147 s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 147 SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 9999999998764
No 186
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.77 E-value=5.7e-18 Score=135.28 Aligned_cols=151 Identities=12% Similarity=0.044 Sum_probs=94.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|.+|+|||||++++.+. .+...+++|+.+... ... ...+.+|||||.... ..+...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~- 67 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTN---GYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF----------DKLRPL- 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhC---CCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh----------cccccc-
Confidence 6899999999999999999876 234555556544321 111 245789999997321 111111
Q ss_pred HhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHH----------HHHHHHHHHHh
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVAR----------RAMQIEESLKA 234 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~----------~~~~~~~~~~~ 234 (269)
....+|++++|+|..+..+... ..++..+.. .+.|+++|+||+|+........ ..+........
T Consensus 68 --~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 145 (173)
T cd04130 68 --CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK 145 (173)
T ss_pred --ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH
Confidence 2345899999999875432222 234544543 3589999999999975321100 00111111111
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~ 262 (269)
. ...+++++||++|.|++++++.+.-
T Consensus 146 ~--~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 146 I--GACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred h--CCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 1 1247999999999999999988753
No 187
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.77 E-value=6.2e-18 Score=154.72 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=101.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccc-------------cCC------------------CCCceeEeeEE---Ee
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TSD------------------KPGLTQTINFF---KL 136 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-------------~s~------------------~~gtt~~~~~~---~~ 136 (269)
..++|+++|++++|||||+++|+...+... .+. ..|.|.+..+. ..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 457999999999999999999886521100 000 12344454322 23
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDT 215 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl 215 (269)
+..+.|+||||+. .+.......+..+|++++|+|+..+...++.+.+..+...+ .|+++|+||+|+
T Consensus 106 ~~~i~~iDTPGh~-------------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 106 KRKFIIADTPGHE-------------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred CcEEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence 5689999999952 22223333445699999999999888777766666666555 468899999999
Q ss_pred CCch--HHHHHHHHHHHHHHhcC-CCCCCeEEeeCCCCCCHHHH
Q 024325 216 VFPI--DVARRAMQIEESLKANN-SLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 216 ~~~~--~~~~~~~~~~~~~~~~~-~~~~~vi~vSa~~g~gi~~L 256 (269)
.... ........+...+.... ....+++++||++|+|++++
T Consensus 173 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 173 VDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 8432 23333344443333222 22578999999999999864
No 188
>PLN03108 Rab family protein; Provisional
Probab=99.77 E-value=3.9e-17 Score=134.65 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=93.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..+|+++|.+|+|||||+|+|++.. .... .+..+.+........ ...+.+|||||.. .+..+...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~-~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~~~~ 74 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSITRS 74 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence 3689999999999999999999862 2211 111122211111111 2357899999952 11222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
++. .+|++++|+|......... ..++..+.. ...|+++|.||+|+....... .....+.... ...+++
T Consensus 75 ~~~---~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~ 146 (210)
T PLN03108 75 YYR---GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKE---HGLIFM 146 (210)
T ss_pred Hhc---cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC--HHHHHHHHHH---cCCEEE
Confidence 333 3899999999875322221 133333322 358999999999997532111 0111111221 246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++||++|.|++++|.++.+.+
T Consensus 147 e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 147 EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999998887655
No 189
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.77 E-value=1.6e-17 Score=133.86 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=95.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-----eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-----~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..+|+++|.+|+|||||++++.... +...+.+|..+. ........+.+|||+|... +..+..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~---f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~----------~~~~~~ 71 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVRP 71 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC---CCCccCCceeeeeEEEEEECCEEEEEEEEECCCchh----------hHhhhh
Confidence 4689999999999999999998762 233333333221 1111134588999999621 223333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHH-H--------H-HHHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA-R--------R-AMQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~-~--------~-~~~~~~~~ 232 (269)
.++ ..+|++++|+|.+...+... ..++..+... +.|+++|.||+|+....... . . .+...+..
T Consensus 72 ~~~---~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 72 LSY---PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred hhc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 333 34999999999875433322 2344444432 58999999999986421100 0 0 01111111
Q ss_pred HhcCCCC-CCeEEeeCCCCCC-HHHHHHHHHHh
Q 024325 233 KANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKI 263 (269)
Q Consensus 233 ~~~~~~~-~~vi~vSa~~g~g-i~~L~~~i~~~ 263 (269)
.. .+ .+++++||++|+| ++++|+.+...
T Consensus 149 ~~---~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 149 KQ---IGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HH---cCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 11 13 4799999999998 99999988774
No 190
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=2e-17 Score=137.71 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=95.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e----eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~----~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..+|+++|.+|+|||||++++++.. +...+.+|..+ . ........+.+|||+|.. .+..+..
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~---F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e----------~~~~~~~ 79 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC---YPETYVPTVFENYTAGLETEEQRVELSLWDTSGSP----------YYDNVRP 79 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC---CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCch----------hhHHHHH
Confidence 4689999999999999999998762 23333333221 1 111123568899999962 2233334
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchH-HH--------HH-HHHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID-VA--------RR-AMQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~-~~--------~~-~~~~~~~~ 232 (269)
.|+. .+|++++|+|.+...+... ..++..+.. .+.|+++|.||+|+..... .. .+ .....+..
T Consensus 80 ~~~~---~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a 156 (232)
T cd04174 80 LCYS---DSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA 156 (232)
T ss_pred HHcC---CCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH
Confidence 4443 4999999999975433322 234444443 2579999999999853210 00 00 01111222
Q ss_pred HhcCCCCC-CeEEeeCCCCC-CHHHHHHHHHHhh
Q 024325 233 KANNSLVQ-PVMMVSSKSGA-GIRSLRTVLSKIA 264 (269)
Q Consensus 233 ~~~~~~~~-~vi~vSa~~g~-gi~~L~~~i~~~~ 264 (269)
.. .+. +++++||++|+ |++++|..+...+
T Consensus 157 ~~---~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 157 KQ---LGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HH---cCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 21 234 58999999998 8999999887654
No 191
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.77 E-value=1.2e-17 Score=138.82 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-E-----eeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-T-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~-----~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+|+++|.+|+|||||++++++.. .. ...++.+.. + +.+......+.+|||||... .+...
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~-~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------------~~~~~ 67 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGE-YD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------------WTEDS 67 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC-cC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch------------HHHhH
Confidence 79999999999999999997652 11 122221111 1 11111245688999999741 01111
Q ss_pred HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
+... .+|++++|+|+.+..... ..+++..+.. .++|+++|+||+|+......... ........ ...++
T Consensus 68 ~~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~--~~~~~a~~---~~~~~ 140 (221)
T cd04148 68 CMQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQ--EGRACAVV---FDCKF 140 (221)
T ss_pred Hhhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHH--HHHHHHHH---cCCeE
Confidence 1110 489999999997532221 1234444433 35899999999999754322111 11111111 24678
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 141 ~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 141 IETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 192
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.77 E-value=1.4e-17 Score=135.24 Aligned_cols=154 Identities=13% Similarity=0.036 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-e-EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~-~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|..|+|||||++++.... +...+..|..+. . .... ...+.+|||||.. .+..+...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~l~~~ 70 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA---FPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE----------EYDRLRTL 70 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC---CCcCCCCceEeeeEEEEEECCEEEEEEEEECCCch----------hhhhhhhh
Confidence 589999999999999999998762 223333333221 1 1111 2458899999962 22333344
Q ss_pred HHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK 233 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~ 233 (269)
|+. .+|++++|+|..+..+.... .+...+.. .+.|+++|.||+|+.......... +.......
T Consensus 71 ~~~---~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 147 (191)
T cd01875 71 SYP---QTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred hcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 433 49999999998753322222 23333332 368999999999996532211100 01111111
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.. ...+++++||++|+|+++++.+|.+.+
T Consensus 148 ~~--~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 148 QI--HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred Hc--CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 11 125799999999999999999998765
No 193
>PLN03126 Elongation factor Tu; Provisional
Probab=99.77 E-value=2.7e-17 Score=150.05 Aligned_cols=149 Identities=20% Similarity=0.219 Sum_probs=106.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCc--------------cccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcc
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAY 152 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~--------------~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~ 152 (269)
.+..+|+++|++++|||||+++|++.... .......|+|.+..+ ...+..+.++||||+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh---- 154 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH---- 154 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH----
Confidence 34578999999999999999999963110 011223566666543 234678999999996
Q ss_pred hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHH-HHHHHHHH
Q 024325 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEE 230 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~-~~~~~~~~ 230 (269)
..+.......+..+|.+++|+|+..+...++.+++..+...++| +++++||+|+.+..+.. .....+..
T Consensus 155 ---------~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 155 ---------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred ---------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 23444445555569999999999988888888888888888998 77899999998754432 23345666
Q ss_pred HHHhc--CCCCCCeEEeeCCCCC
Q 024325 231 SLKAN--NSLVQPVMMVSSKSGA 251 (269)
Q Consensus 231 ~~~~~--~~~~~~vi~vSa~~g~ 251 (269)
.+... .....|++++||.+|.
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHhcCCCcCcceEEEEEccccc
Confidence 55543 2235789999999884
No 194
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.1e-17 Score=147.25 Aligned_cols=159 Identities=21% Similarity=0.311 Sum_probs=121.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
...|.|.++|+...|||||+.+|.+. .++ .+..-|.|+++--|. .|..++|.||||+ ..+.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks-~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-------------aAF~ 215 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKS-SVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-------------AAFS 215 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhC-cee-hhhcCCccceeceEEEecCCCCEEEEecCCcH-------------HHHH
Confidence 35689999999999999999999988 333 345567898875443 4788999999996 2233
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCCCeE
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVM 243 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~vi 243 (269)
..--++....|.+++|+.+.++..++..+.++..+..++|+++++||||.... ..++..+.+... .-+..+...+++
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvi 294 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVI 294 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEE
Confidence 33335666689999999999999999999999999999999999999998754 333433333221 011123467899
Q ss_pred EeeCCCCCCHHHHHHHHHHhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++||++|+|++.|.+.+.-..
T Consensus 295 piSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 295 PISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EeecccCCChHHHHHHHHHHH
Confidence 999999999999999886544
No 195
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.3e-18 Score=133.74 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=102.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccc-cCCC---CCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDK---PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~-~s~~---~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..+|+++|..|+|||||+-++.... ... ..+. .+.|..+.......++.+|||+|. +.+..+...
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ----------ERy~slapM 73 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ----------ERYHSLAPM 73 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCc----------ccccccccc
Confidence 3689999999999999999987762 111 1111 122333333333467889999997 334667777
Q ss_pred HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhhCCc---EEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERSQTK---YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~~~p---~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
|++. ++++|+|.|..+.-+.. -..+++.|.....| +.+|.||+|+....++.. ++.+.... ..+.+++
T Consensus 74 YyRg---A~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~--~ea~~yAe---~~gll~~ 145 (200)
T KOG0092|consen 74 YYRG---ANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEF--EEAQAYAE---SQGLLFF 145 (200)
T ss_pred eecC---CcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccH--HHHHHHHH---hcCCEEE
Confidence 7776 89999999987532221 13455556554334 456999999987332221 11111111 2367899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
.+|||+|.|+++++..|.+.+..
T Consensus 146 ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 146 ETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred EEecccccCHHHHHHHHHHhccC
Confidence 99999999999999999887643
No 196
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=2e-17 Score=132.84 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-e-EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N-FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~-~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++.+.. +...+.+|..+. . ... ....+.+|||||... +..+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~----------~~~~~~~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC---YPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY----------YDNVRPL 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc---CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh----------hhhcchh
Confidence 479999999999999999999862 233443343221 1 111 134588999999621 1222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHH-H--------H-HHHHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVA-R--------R-AMQIEESLK 233 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~-~--------~-~~~~~~~~~ 233 (269)
++ ..+|++++|+|.+...+... ..++..+.. ...|+++|.||+|+....... . . .+...+...
T Consensus 69 ~~---~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~ 145 (178)
T cd04131 69 CY---PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK 145 (178)
T ss_pred hc---CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence 32 34899999999875433332 234444443 368999999999986421100 0 0 011111111
Q ss_pred hcCCCC-CCeEEeeCCCCCC-HHHHHHHHHHh
Q 024325 234 ANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKI 263 (269)
Q Consensus 234 ~~~~~~-~~vi~vSa~~g~g-i~~L~~~i~~~ 263 (269)
. .+ .+++++||++|+| ++++|..+.+.
T Consensus 146 ~---~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 146 Q---LGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred H---hCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 1 13 3789999999995 99999988874
No 197
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.76 E-value=3.4e-17 Score=153.13 Aligned_cols=159 Identities=21% Similarity=0.233 Sum_probs=110.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCcc----cc----------CCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchhH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVV----RT----------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE 155 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~----~~----------s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~ 155 (269)
.+|+++|+.++|||||+++|+...... .+ ....|.|-.. .+.+.+..+.+|||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 379999999999999999998631110 00 0122344332 2344578899999999722
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 235 (269)
+.......+..+|.+++|+|+..+...+...++..+...++|+++|+||+|+.... .......+.+.+...
T Consensus 77 --------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 77 --------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAEL 147 (594)
T ss_pred --------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhh
Confidence 22222223334999999999998887888888888888899999999999986532 223333444433321
Q ss_pred ----CCCCCCeEEeeCCCCC----------CHHHHHHHHHHhhh
Q 024325 236 ----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIAR 265 (269)
Q Consensus 236 ----~~~~~~vi~vSa~~g~----------gi~~L~~~i~~~~~ 265 (269)
.....|++++||++|. |++.|++.|.+.+.
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 1224689999999996 89999999988764
No 198
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.75 E-value=3e-17 Score=134.04 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=92.0
Q ss_pred EcCCCCChHHHHHHHhcCcCccccCCCCCce-eEe--eEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 98 vG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~--~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
+|.+|+|||||+++++... +...+..|. .+. ..+. ....+.+|||||.. .+..+...|++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~---f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE---FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE----------KFGGLRDGYYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC---CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHhcC
Confidence 5999999999999998652 222222222 122 1111 24568999999962 223344444443
Q ss_pred ccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
+|++++|+|.....+... ..++..+.. .++|+++|.||+|+.......+.. .+ .. ....+++++||+
T Consensus 68 ---ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~---~~---~~~~~~~e~SAk 137 (200)
T smart00176 68 ---GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TF---HR---KKNLQYYDISAK 137 (200)
T ss_pred ---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH-HH---HH---HcCCEEEEEeCC
Confidence 899999999986433222 234444443 368999999999986422111111 11 11 124689999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 024325 249 SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~ 265 (269)
+|+||+++|.+|...+.
T Consensus 138 ~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 138 SNYNFEKPFLWLARKLI 154 (200)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.75 E-value=4.3e-17 Score=152.85 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=103.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCcc-------ccC------CCCCceeEee---EEEe-----CCcEEEEcCCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTIN---FFKL-----GTKLCLVDLPGYG 149 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~-------~~s------~~~gtt~~~~---~~~~-----~~~~~lvDtpG~~ 149 (269)
...+++++|+.++|||||+++|+...... .+. ...|.|-... +.+. +..+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34589999999999999999998631110 000 1223443321 1111 4568999999983
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+. ......+ ...+|.+++|+|++.+...++...+..+...++|+++|+||+|+.... .....+.+.
T Consensus 86 dF----------~~~v~~s---l~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-~~~v~~ei~ 151 (600)
T PRK05433 86 DF----------SYEVSRS---LAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-PERVKQEIE 151 (600)
T ss_pred HH----------HHHHHHH---HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHHH
Confidence 31 1112222 234999999999998877776666666666789999999999986532 222233333
Q ss_pred HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.+. ....+++++||++|.|+++|+++|.+.+.
T Consensus 152 ~~lg---~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 152 DVIG---IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHhC---CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3221 11235899999999999999999987664
No 200
>PRK10218 GTP-binding protein; Provisional
Probab=99.75 E-value=5.6e-17 Score=151.53 Aligned_cols=159 Identities=20% Similarity=0.188 Sum_probs=110.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccC---------------CCCCceeEee---EEEeCCcEEEEcCCCCCCcch
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA 153 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s---------------~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~ 153 (269)
..+|+++|+.++|||||+++|+.... .+.. ...|.|.... +.+.+..+.+|||||+.+.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g-~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df-- 81 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSG-TFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF-- 81 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcC-CcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh--
Confidence 45899999999999999999986421 1111 1234444432 2234678999999997432
Q ss_pred hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 233 (269)
......++ ..+|.+++|+|+..+...++..++..+...++|.++|+||+|+... ........+.+.+.
T Consensus 82 --------~~~v~~~l---~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~~ 149 (607)
T PRK10218 82 --------GGEVERVM---SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLFV 149 (607)
T ss_pred --------HHHHHHHH---HhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC-chhHHHHHHHHHHh
Confidence 11122222 3399999999999887777778888888889999999999998753 22333344444432
Q ss_pred hc----CCCCCCeEEeeCCCCC----------CHHHHHHHHHHhhh
Q 024325 234 AN----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIAR 265 (269)
Q Consensus 234 ~~----~~~~~~vi~vSa~~g~----------gi~~L~~~i~~~~~ 265 (269)
.. .....|++++||++|. |+..|++.|.+.+.
T Consensus 150 ~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 150 NLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred ccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 21 1135789999999998 68899998887654
No 201
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=3.5e-17 Score=137.08 Aligned_cols=158 Identities=23% Similarity=0.251 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCc----cccCC------------CCCceeEe---eEEEeCCcEEEEcCCCCCCcchh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~----~~~s~------------~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
+|+++|++|+|||||+++|+..... ..+.. ..+.|... .+...+..+.+|||||+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 4899999999999999999864211 00111 11122222 22334678999999998431
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 234 (269)
...... ....+|.+++|+|+..+.......+++.+...++|+++++||+|+.... ..+....+++.+..
T Consensus 78 -------~~~~~~---~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~ 146 (237)
T cd04168 78 -------IAEVER---SLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSS 146 (237)
T ss_pred -------HHHHHH---HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHHHHHHHCC
Confidence 111112 2233899999999998877777788888888899999999999997532 12222222222210
Q ss_pred ----------------------------------------------------------cCCCCCCeEEeeCCCCCCHHHH
Q 024325 235 ----------------------------------------------------------NNSLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 235 ----------------------------------------------------------~~~~~~~vi~vSa~~g~gi~~L 256 (269)
......|++.-||.++.|++.|
T Consensus 147 ~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~l 226 (237)
T cd04168 147 DIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEEL 226 (237)
T ss_pred CeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHH
Confidence 0112467888899999999999
Q ss_pred HHHHHHhhh
Q 024325 257 RTVLSKIAR 265 (269)
Q Consensus 257 ~~~i~~~~~ 265 (269)
++.|.+.+.
T Consensus 227 l~~~~~~~p 235 (237)
T cd04168 227 LEGITKLFP 235 (237)
T ss_pred HHHHHHhcC
Confidence 999988764
No 202
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.74 E-value=6.5e-18 Score=135.36 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=100.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
...+|+++|..|||||||+++|... ....+.+..|.... .+...+..+.+||.+|... .+..|.. |+
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~~-~i~~~~~~~~~~d~gG~~~------~~~~w~~----y~- 79 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNIE-EIKYKGYSLTIWDLGGQES------FRPLWKS----YF- 79 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEEE-EEEETTEEEEEEEESSSGG------GGGGGGG----GH-
T ss_pred cEEEEEEECCCccchHHHHHHhhhc-cccccCcccccccc-eeeeCcEEEEEEecccccc------cccccee----ec-
Confidence 3468999999999999999999876 33332222222211 1222467899999999632 1122332 22
Q ss_pred cccccceEEEEEeCCCCCC--cchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC-CCCCCeEE
Q 024325 171 TRVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SLVQPVMM 244 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~--~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~ 244 (269)
..+|+++||+|+++... .....+.+.+.. .++|+++++||.|+.......+....+. +.... .....++.
T Consensus 80 --~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~--l~~l~~~~~~~v~~ 155 (175)
T PF00025_consen 80 --QNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG--LEKLKNKRPWSVFS 155 (175)
T ss_dssp --TTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT--GGGTTSSSCEEEEE
T ss_pred --cccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh--hhhcccCCceEEEe
Confidence 24999999999985221 111233333332 3689999999999987655444333221 11121 23566899
Q ss_pred eeCCCCCCHHHHHHHHHHh
Q 024325 245 VSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~ 263 (269)
+||.+|+|+.+.++||.+.
T Consensus 156 ~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 156 CSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EBTTTTBTHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHhc
Confidence 9999999999999999875
No 203
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.74 E-value=8.5e-17 Score=146.21 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=107.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc-c----------------------ccC------CCCCceeEeeEEE---eCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V----------------------RTS------DKPGLTQTINFFK---LGT 138 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-~----------------------~~s------~~~gtt~~~~~~~---~~~ 138 (269)
...+|+++|+.++|||||+.+|+..... . .+. ...|+|.+..+.. .+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3468999999999999999998752110 0 011 1345666654333 356
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcchHHHHHHHHhhCCc-EEEEE
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL 210 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-------~~~~~~~~~~l~~~~~p-~iiv~ 210 (269)
.+.|+||||+ ..+.......+..+|.+++|+|+..+. ..+..+.+..+...++| +|+++
T Consensus 86 ~i~lIDtPGh-------------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGH-------------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred EEEEEECCCh-------------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 7999999996 344555566666799999999998875 35677888888888987 67999
Q ss_pred ecCCCCC----chHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325 211 TKTDTVF----PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 211 NK~Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~ 255 (269)
||+|... ..........+...+..... ...|++++||.+|+|+.+
T Consensus 153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999532 24455556666666654321 247899999999999964
No 204
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.74 E-value=5.6e-17 Score=127.80 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=89.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
+|+++|.+|+|||||+++++... +...++.+..+. .+...+ ..+.+|||+|... ..+.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~---f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~~ 63 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS---YVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQFA 63 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC---CCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc---------------hhHH
Confidence 69999999999999999887652 112222221111 111122 4588999999732 0122
Q ss_pred hcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCC--chHHHH-HHHHHHHHHHhcCCCCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF--PIDVAR-RAMQIEESLKANNSLVQP 241 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~--~~~~~~-~~~~~~~~~~~~~~~~~~ 241 (269)
..+|++++|+|.++..+.+. ..++..+.. ...|+++|.||+|+.. ...... ....+.+ . ....+
T Consensus 64 ---~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~--~~~~~ 135 (158)
T cd04103 64 ---SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---D--MKRCS 135 (158)
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---H--hCCCc
Confidence 23899999999886433333 234444433 2479999999999852 111111 1111211 1 11368
Q ss_pred eEEeeCCCCCCHHHHHHHHHHh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
++++||++|.||++++..+.+.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999998754
No 205
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.74 E-value=1.6e-16 Score=120.90 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=105.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
.+|.++|..||||||++++|.+. ....+++..|..-.... ..+..+.+||..|.. ..++.|..+.+.
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Iktl~-~~~~~L~iwDvGGq~------~lr~~W~nYfes----- 83 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKTLE-YKGYTLNIWDVGGQK------TLRSYWKNYFES----- 83 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeEEEE-ecceEEEEEEcCCcc------hhHHHHHHhhhc-----
Confidence 58999999999999999999998 55555655443333222 237789999999963 345566544433
Q ss_pred cccceEEEEEeCCCCCCcch-HHHH-HHH---HhhCCcEEEEEecCCCCCchHHHHHH--HHHHHHHHhcCCCCCCeEEe
Q 024325 173 VSLKRVCLLIDTKWGVKPRD-HELI-SLM---ERSQTKYQVVLTKTDTVFPIDVARRA--MQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~-~~~~-~~l---~~~~~p~iiv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~vi~v 245 (269)
.|+++||+|+++...-++ ...+ +.+ +-.+.|++++.||.|+...-...... -.+.+.. .....+++-+
T Consensus 84 --tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~---ks~~~~l~~c 158 (185)
T KOG0073|consen 84 --TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA---KSHHWRLVKC 158 (185)
T ss_pred --cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc---cccCceEEEE
Confidence 999999999975432222 1222 222 22468999999999998543333332 2222222 2346889999
Q ss_pred eCCCCCCHHHHHHHHHHhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~ 265 (269)
||.+|+++.+-++||.+.+-
T Consensus 159 s~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 159 SAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred eccccccHHHHHHHHHHHHH
Confidence 99999999999999887654
No 206
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=4.5e-17 Score=138.83 Aligned_cols=141 Identities=20% Similarity=0.233 Sum_probs=95.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcC----ccccC------------CCCCceeEee---EEEeCCcEEEEcCCCCCCcchh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~----~~~~s------------~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
+|+++|++|+|||||+++|+.... ...+. ...|+|.+.. +...+..+.+|||||+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999974311 11111 2345565543 333477899999999732
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 234 (269)
+.......+..+|++++|+|+..+....+..++..+...++|+++++||+|+... +.......+++.+..
T Consensus 77 ---------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~ 146 (270)
T cd01886 77 ---------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGA 146 (270)
T ss_pred ---------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCC
Confidence 2222333344499999999999888888888888888889999999999998753 233444555554432
Q ss_pred cCCCCCCeEEeeCCCC
Q 024325 235 NNSLVQPVMMVSSKSG 250 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g 250 (269)
. ....++|+|+..+
T Consensus 147 ~--~~~~~~Pisa~~~ 160 (270)
T cd01886 147 N--PVPLQLPIGEEDD 160 (270)
T ss_pred C--ceEEEeccccCCC
Confidence 1 1233678888633
No 207
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.73 E-value=6.1e-17 Score=140.57 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=62.2
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--E-------------------------eCCcEEEEcCCC
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-------------------------LGTKLCLVDLPG 147 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~-------------------------~~~~~~lvDtpG 147 (269)
|+++|.||+|||||+|+|++.. ..++++|++|.+.+.. . ....+.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5899999999999999999984 5789999999775421 0 124689999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (269)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~ 185 (269)
+...... ...+...|+.....+|++++|+|+.
T Consensus 79 lv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 8543221 1234456666666699999999986
No 208
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.73 E-value=6.5e-17 Score=124.38 Aligned_cols=146 Identities=21% Similarity=0.145 Sum_probs=91.3
Q ss_pred EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
++|++|+|||||+|++++.. .. ......+..+.. ... .+..+.+|||||.... .... ...
T Consensus 1 iiG~~~~GKStl~~~l~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~---~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGE-FV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLR---RLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCC-cC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHH----------HhHH---HHH
Confidence 57999999999999999873 21 112111222221 111 2567899999997431 1111 222
Q ss_pred ccccceEEEEEeCCCCCCcchHH-----HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 172 RVSLKRVCLLIDTKWGVKPRDHE-----LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~~~-----~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
...+|++++|+|+..+....+.. ........+.|+++|+||+|+.......... ... ... .....+++++|
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~s 141 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE-LAE-QLA--KELGVPYFETS 141 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH-HHH-HHH--hhcCCcEEEEe
Confidence 34489999999998643333222 1122334578999999999998765433221 011 111 12357899999
Q ss_pred CCCCCCHHHHHHHHH
Q 024325 247 SKSGAGIRSLRTVLS 261 (269)
Q Consensus 247 a~~g~gi~~L~~~i~ 261 (269)
++++.|+++++++|.
T Consensus 142 ~~~~~~i~~~~~~l~ 156 (157)
T cd00882 142 AKTGENVEELFEELA 156 (157)
T ss_pred cCCCCChHHHHHHHh
Confidence 999999999999985
No 209
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.5e-16 Score=123.40 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEeeE---E--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTINF---F--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~~---~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.+|+++|..++||||||++++.. .+..++..| .-|... + .....+.+|||+|. +++..++.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd---~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrslip 89 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYD---KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLIP 89 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHh---hhcccccceeeeEEEEEEEEEcCcEEEEEEEecccH----------HHHhhhhh
Confidence 68999999999999999999876 233443322 233321 1 12456889999995 67788888
Q ss_pred HHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh----CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.|++. +.++++|.|..+.-+.. ...+++.+... ++-+++|.||.||.+..+....... ....+ .+..
T Consensus 90 sY~Rd---s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~--~kAke---l~a~ 161 (221)
T KOG0094|consen 90 SYIRD---SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE--RKAKE---LNAE 161 (221)
T ss_pred hhccC---CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH--HHHHH---hCcE
Confidence 88877 89999999987533322 23455444332 2457789999999987655433322 11122 2457
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++.+||+.|+|+.+||..|...+..
T Consensus 162 f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 162 FIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred EEEecccCCCCHHHHHHHHHHhccC
Confidence 8999999999999999998776543
No 210
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.4e-16 Score=125.12 Aligned_cols=153 Identities=19% Similarity=0.174 Sum_probs=103.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce--eEee-----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt--~~~~-----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
.++|+++|.+|+|||.|+.++.+.. ++..+. .| .|+. ......++.+|||+|. +++..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~---f~e~~~-sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDT---FTESYI-STIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCC---cchhhc-ceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhhh
Confidence 4799999999999999999999862 222221 22 2222 2222457999999996 456677
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
...|++. ++.|++|.|.....+... .+++..+.. .++|.++|.||+|+.+......... +..... ...
T Consensus 75 t~syYR~---ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a--~~fa~~---~~~ 146 (205)
T KOG0084|consen 75 TSSYYRG---AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEA--QEFADE---LGI 146 (205)
T ss_pred hHhhccC---CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHH--HHHHHh---cCC
Confidence 7777776 999999999875322221 244444544 3579999999999986543322111 111111 245
Q ss_pred C-eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 241 P-VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 241 ~-vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
| ++++|||.+.|+++.|..|...+..
T Consensus 147 ~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 147 PIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred cceeecccCCccCHHHHHHHHHHHHHH
Confidence 5 9999999999999999888766543
No 211
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=1.5e-16 Score=131.64 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=75.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCC---------------CceeEe-----eEEEe--------CCcEEEEcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---------------GLTQTI-----NFFKL--------GTKLCLVDL 145 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~---------------gtt~~~-----~~~~~--------~~~~~lvDt 145 (269)
+|+++|+.++|||||+.+|+.... ....... |.|-+. .+... +..+.+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAG-IISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-CCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 699999999999999999986522 1111111 122111 12111 456889999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
||+..- ..........+|++++|+|+..+...+...++..+...++|+++|+||+|+.
T Consensus 81 PG~~~f-------------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-------------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-------------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 998431 1122222334999999999998888877788887777789999999999986
No 212
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=8.1e-17 Score=142.16 Aligned_cols=180 Identities=19% Similarity=0.171 Sum_probs=124.8
Q ss_pred hhhccCCCC--CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCC---cEEEEcCCCCCCcchh
Q 024325 80 AAKVSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAK 154 (269)
Q Consensus 80 ~~~~~~~~~--~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~---~~~lvDtpG~~~~~~~ 154 (269)
-.++.+.+| ..+.+.++++|+||+|||||+|.++... ..+.++++||......+.++ .+.++||||+-+....
T Consensus 154 Vrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 154 VRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred HHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchh
Confidence 334566676 5778899999999999999999998874 67899999999875444333 4789999999764222
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch---HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+ ....+...-..+.++. .+|+|++|-+......- ..++..+.. .++|+|+|+||+|+..++++....+.+.
T Consensus 232 d--rN~IEmqsITALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 232 D--RNIIEMQIITALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred h--hhHHHHHHHHHHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHH
Confidence 1 1111111112223322 35889999885433322 344444444 3789999999999999888776665555
Q ss_pred HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
+.+... ...+++.+|+.+.+|+-++....++.+-.+
T Consensus 308 ~~~~~~--~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 308 QTIIDD--GNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred HHHHhc--cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 555442 247899999999999999988887766444
No 213
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.72 E-value=5.7e-16 Score=128.93 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=98.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.....|+++|.+|+|||||+|.|++......++...|+. ......+..+.++||||.. ..+ .
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i--~i~~~~~~~i~~vDtPg~~------------~~~----l 98 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI--TVVTGKKRRLTFIECPNDI------------NAM----I 98 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE--EEEecCCceEEEEeCCchH------------HHH----H
Confidence 345679999999999999999998863223334444432 1122346779999999841 111 1
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCCch-HHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
.....+|++++|+|+..++...+..++..+...+.|.+ +|+||+|+..+. ...+....+++.+........+++++||
T Consensus 99 ~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 99 DIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred HHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence 12234999999999998888888888888888888854 599999998543 2444455555544322223579999999
Q ss_pred CCC
Q 024325 248 KSG 250 (269)
Q Consensus 248 ~~g 250 (269)
++.
T Consensus 179 ~~~ 181 (225)
T cd01882 179 IVH 181 (225)
T ss_pred ccC
Confidence 987
No 214
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.72 E-value=1e-15 Score=128.82 Aligned_cols=128 Identities=22% Similarity=0.172 Sum_probs=87.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+|||||+|+|++. ....++..+++|....... .+..+.+|||||+.+........+.....+..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 4579999999999999999999998 5667788877777765433 36789999999998763211111111222333
Q ss_pred HHhcccccceEEEEEeCCC-CCCcchHHHHHHHHh-hC----CcEEEEEecCCCCCchH
Q 024325 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER-SQ----TKYQVVLTKTDTVFPID 220 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~-~~----~p~iiv~NK~Dl~~~~~ 220 (269)
|+.. ...+++++|...+. .....+..+++.+.. .+ .++++|+||+|...+..
T Consensus 109 ~l~~-~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 109 YLKK-KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHhc-cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 4432 23788888865542 445566677777765 22 47999999999986543
No 215
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=123.65 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=103.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhcCcCccc----cCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVR----TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~----~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
+....+|.++|.+|+|||||+|.+.... ... +-...+.|+++.....-..+.+|||+|. +++..+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~k-F~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ----------ERFqsL 74 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKK-FSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ----------ERFQSL 74 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHH-HHHHhccccchhheeeEEEEcCeEEEEEEEecccH----------HHhhhc
Confidence 3556799999999999999999998762 211 1112335666665544456889999995 445555
Q ss_pred HHHHHhcccccceEEEEEeCCCCCC--cchHHHHHHHHhh------CCcEEEEEecCCCCCchH---HHHHHHHHHHHHH
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS------QTKYQVVLTKTDTVFPID---VARRAMQIEESLK 233 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~--~~~~~~~~~l~~~------~~p~iiv~NK~Dl~~~~~---~~~~~~~~~~~~~ 233 (269)
.-.|++. +|.++++.|....-. ..+..--+++.+. ..|++++.||+|+..... -.+..+.. ..
T Consensus 75 g~aFYRg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~W---C~ 148 (210)
T KOG0394|consen 75 GVAFYRG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTW---CK 148 (210)
T ss_pred ccceecC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHH---HH
Confidence 5555555 999999988764322 2222222333332 368999999999975321 11111111 11
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
. ...+|++++|||.+.|+++.|..+.+.+
T Consensus 149 s--~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 149 S--KGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred h--cCCceeEEecccccccHHHHHHHHHHHH
Confidence 1 2368999999999999999999887654
No 216
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=2.6e-16 Score=128.18 Aligned_cols=153 Identities=12% Similarity=-0.043 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCChHHHHH-HHhcCcC--ccccCCCCCcee--E-ee------------EEEeCCcEEEEcCCCCCCcchh
Q 024325 93 PEIAFAGRSNVGKSSMLN-ALTRQWG--VVRTSDKPGLTQ--T-IN------------FFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin-~l~~~~~--~~~~s~~~gtt~--~-~~------------~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
.+|+++|.+|+|||||+. ++.+... ..+...+.+|.. + .. .......+.+|||||....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 589999999999999996 5554310 012233333331 1 10 0111346889999997321
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchH----------
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPID---------- 220 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~---------- 220 (269)
+... ....+|++++|+|..+..+.... .++..+.. .+.|+++|.||+|+.....
T Consensus 80 ---------~~~~---~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 147 (195)
T cd01873 80 ---------DRRF---AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred ---------hhcc---cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccc
Confidence 1111 23459999999998754333322 24454543 3579999999999864200
Q ss_pred -------HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 221 -------VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 221 -------~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
..-.....++.... .+.+++++||++|.|++++|+.+.+.
T Consensus 148 ~~~~~~~~~V~~~e~~~~a~~---~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 148 ARPIKNADILPPETGRAVAKE---LGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccCCccCHHHHHHHHHH---hCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 00001111121121 24689999999999999999988764
No 217
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.71 E-value=2.1e-16 Score=127.94 Aligned_cols=154 Identities=16% Similarity=0.048 Sum_probs=90.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-ee----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+|+++|++|+|||||++++..... ......++.+ .. .......+.+|||||.... ..+...+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~ 69 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF---PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY----------ERLRPLS 69 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CcccCCcccceEEEEEEECCEEEEEEEEECCCChhc----------cccchhh
Confidence 799999999999999999985421 1121122222 11 1111245789999996321 1111111
Q ss_pred HhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHH------HH--HHHHHHHHHhcC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA------RR--AMQIEESLKANN 236 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~------~~--~~~~~~~~~~~~ 236 (269)
...++++++++|......... ..++..+... ..|+++|.||+|+....... .. ...........
T Consensus 70 ---~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (187)
T cd04129 70 ---YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI- 145 (187)
T ss_pred ---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh-
Confidence 234899999998764322222 2344444432 68999999999985421000 00 01111111111
Q ss_pred CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 237 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
...+++++||++|.|++++++++.+.+.
T Consensus 146 -~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 146 -GAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred -CCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 1247899999999999999999987654
No 218
>PRK00007 elongation factor G; Reviewed
Probab=99.71 E-value=3e-16 Score=150.13 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=86.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC----ccccC------------CCCCceeEee---EEEeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~----~~~~s------------~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~ 151 (269)
...+|+++|++|+|||||+|+|+.... ...++ ...|+|.+.. +...+..+.++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 456999999999999999999974211 11122 2456776643 334477899999999721
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
+.......+..+|++++|+|+..+...++..++..+...++|+++++||+|+...
T Consensus 88 ------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 ------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred ------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2223444455599999999999999999999999999999999999999999853
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.71 E-value=2.7e-16 Score=129.95 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=96.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCcccc---C---------------CCCCceeEee---EEE-----eCCcEEEEcCCC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT---S---------------DKPGLTQTIN---FFK-----LGTKLCLVDLPG 147 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~---s---------------~~~gtt~~~~---~~~-----~~~~~~lvDtpG 147 (269)
+|+++|++|+|||||+++|+.... ... . ...|+|-+.. +.. ....+.+|||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~-~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTH-DLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcC-CCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 589999999999999999987521 110 0 0112222111 111 125689999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC------c-hH
Q 024325 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF------P-ID 220 (269)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~------~-~~ 220 (269)
..+. ......+ ...+|++++|+|+..+.......++..+...+.|+++|+||+|+.. + ..
T Consensus 81 ~~~f----------~~~~~~~---~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~ 147 (213)
T cd04167 81 HVNF----------MDEVAAA---LRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA 147 (213)
T ss_pred Ccch----------HHHHHHH---HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence 7432 1111122 2239999999999877666555666666666799999999999862 1 11
Q ss_pred ---HHHHHHHHHHHHHhcCC--------CCCCeEEeeCCCCCCHH--------HHHHHHHHhh
Q 024325 221 ---VARRAMQIEESLKANNS--------LVQPVMMVSSKSGAGIR--------SLRTVLSKIA 264 (269)
Q Consensus 221 ---~~~~~~~~~~~~~~~~~--------~~~~vi~vSa~~g~gi~--------~L~~~i~~~~ 264 (269)
+.+..+.+...+..... ...++++.|++.++++. +|++.|.+.+
T Consensus 148 ~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 148 YFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 22223334433333211 12338899999999887 6777666543
No 220
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.71 E-value=3.8e-16 Score=129.40 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=91.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e----eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~----~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||++++.+.. +...+.+|..+ . ........+.+|||+|... +..+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~---f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~----------~~~l~~~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA---YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY----------YDNVRPL 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC---CCCccCCccccceEEEEEECCEEEEEEEEeCCCcHH----------HHHHhHH
Confidence 379999999999999999999862 23333333221 1 1111234588999999621 2223233
Q ss_pred HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHH---------H-HHHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR---------A-MQIEESLK 233 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~---------~-~~~~~~~~ 233 (269)
++ ..+|++++|+|.+...+... ..+...+.. .+.|+++|.||+|+......... . +.......
T Consensus 69 ~~---~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak 145 (222)
T cd04173 69 AY---PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK 145 (222)
T ss_pred hc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence 33 34999999999875422221 122222222 35899999999999653211100 0 01111111
Q ss_pred hcCCCC-CCeEEeeCCCCCC-HHHHHHHHHHhh
Q 024325 234 ANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKIA 264 (269)
Q Consensus 234 ~~~~~~-~~vi~vSa~~g~g-i~~L~~~i~~~~ 264 (269)
. .+ .+++++||++++| ++++|.......
T Consensus 146 ~---~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 146 Q---VGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred H---cCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 1 13 4899999999985 999998877643
No 221
>PRK12739 elongation factor G; Reviewed
Probab=99.71 E-value=3.2e-16 Score=150.01 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=86.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC----ccccC------------CCCCceeEee---EEEeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~----~~~~s------------~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~ 151 (269)
...+|+++|++|+|||||+|+|+.... ...+. ...|+|.+.. +...+..+.++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 456899999999999999999975311 11122 1456666643 334577899999999721
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
+.......+..+|++++|+|+..+...++..++..+...++|+++++||+|+...
T Consensus 86 ------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 ------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred ------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2223344444599999999999998888889999998889999999999999854
No 222
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.70 E-value=3.3e-16 Score=139.95 Aligned_cols=85 Identities=22% Similarity=0.213 Sum_probs=64.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---------------------------eCCcEEEEcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL 145 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---------------------------~~~~~~lvDt 145 (269)
++|+++|.||+|||||+|+|++.. ..++++|++|.+.+... ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 479999999999999999999983 56789999998765421 1134789999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (269)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~ 185 (269)
||+....... ..+...|+.....+|++++|+|+.
T Consensus 80 aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9986542211 234456666666799999999996
No 223
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.2e-16 Score=140.83 Aligned_cols=164 Identities=21% Similarity=0.215 Sum_probs=117.9
Q ss_pred CCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCc-------------cccCCCCCceeEe---eEEEeC---CcEEEEcCC
Q 024325 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTI---NFFKLG---TKLCLVDLP 146 (269)
Q Consensus 86 ~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~-------------~~~s~~~gtt~~~---~~~~~~---~~~~lvDtp 146 (269)
..|..+..+++|+-+...|||||..+|+..... ..+....|.|-.. ..++.+ +.+++||||
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP 133 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP 133 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC
Confidence 344456678999999999999999998754210 1122345556443 233334 779999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHH
Q 024325 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 226 (269)
Q Consensus 147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~ 226 (269)
|+.+- ..+..+.+..|+.+++|+|++++.+.+....+...-+.+..+|.|+||+|+..+ +.+....
T Consensus 134 GHvDF-------------s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~ 199 (650)
T KOG0462|consen 134 GHVDF-------------SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA-DPERVEN 199 (650)
T ss_pred Ccccc-------------cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC-CHHHHHH
Confidence 98542 112222333499999999999999988877666666778999999999999865 3455555
Q ss_pred HHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 227 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 227 ~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
.+.+.+.. ...+++.+|||+|.|++++++.|.+.+..
T Consensus 200 q~~~lF~~---~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 200 QLFELFDI---PPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHHhcC---CccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 55554432 24689999999999999999999998753
No 224
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=1.6e-15 Score=129.74 Aligned_cols=150 Identities=20% Similarity=0.358 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCC--------CCCcee-Eee---EEEeC--CcEEEEcCCCCCCcchhHH--
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQ-TIN---FFKLG--TKLCLVDLPGYGFAYAKEE-- 156 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~--------~~gtt~-~~~---~~~~~--~~~~lvDtpG~~~~~~~~~-- 156 (269)
++|+++|.+|+|||||+|+|++. .....+. ...|+. ... ....+ ..+.+|||||+++......
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~-~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNT-KLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcC-CCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999988 3333321 222321 111 11113 3689999999987643221
Q ss_pred --HHHHHHHHHHHHHh---------c--ccccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHH
Q 024325 157 --VKDAWEELVKEYVS---------T--RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (269)
Q Consensus 157 --~~~~~~~~~~~~~~---------~--~~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~ 222 (269)
+......-...|+. . -..+|+++|++++. .++...+.++++.+.. .+|+++|+||+|++...+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~~ 162 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEELK 162 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHHH
Confidence 11111111111111 1 11378899999876 4677778888998875 79999999999999877776
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 223 RRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
...+.+.+.+... +.+++..+.
T Consensus 163 ~~k~~i~~~l~~~---~i~~~~~~~ 184 (276)
T cd01850 163 EFKQRIMEDIEEH---NIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHHc---CCceECCCC
Confidence 6666666666543 345555443
No 225
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.69 E-value=4.8e-16 Score=148.78 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=83.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc----cccCC------------CCCceeEee---EEEeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~----~~~s~------------~~gtt~~~~---~~~~~~~~~lvDtpG~~~~ 151 (269)
...+|+++|++|+|||||+|+|+..... ..+.+ ..|+|.+.. +.+.+..+.+|||||+.+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 4569999999999999999999753211 11111 345666543 3344778999999998532
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
. .........+|++++|+|+..+...++..++..+...++|+++|+||+|+...
T Consensus 89 ~-------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 89 T-------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred h-------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 1 11122233389999999999888888888888888889999999999999854
No 226
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.69 E-value=8.4e-16 Score=126.00 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=90.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
|.|+++|++|||||||+++|.+.. .....+.++....... .+..+.+|||||... +......
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~---~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~----------~~~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGK---YRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK----------LRDKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC---CCCccCcEeecceEEEeecCCCCceEEEEECCCCHH----------HHHHHHH
Confidence 579999999999999999999862 2222333333322222 256799999999732 1122222
Q ss_pred HHhccccc-ceEEEEEeCCCCCCcch---HHHHHHHH---h--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHH-----
Q 024325 168 YVSTRVSL-KRVCLLIDTKWGVKPRD---HELISLME---R--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK----- 233 (269)
Q Consensus 168 ~~~~~~~~-d~vl~vid~~~~~~~~~---~~~~~~l~---~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~----- 233 (269)
++. .+ +++++|+|+........ ..+...+. . .++|+++|+||+|+..........+.+...+.
T Consensus 68 ~~~---~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~ 144 (203)
T cd04105 68 TLK---NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRES 144 (203)
T ss_pred HHh---ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 222 25 99999999985321111 12222221 1 37899999999999864333222222221110
Q ss_pred --h-c-----------------------C--CCCCCeEEeeCCCCC-CHHHHHHHHHH
Q 024325 234 --A-N-----------------------N--SLVQPVMMVSSKSGA-GIRSLRTVLSK 262 (269)
Q Consensus 234 --~-~-----------------------~--~~~~~vi~vSa~~g~-gi~~L~~~i~~ 262 (269)
. . . .....++..|++.+. |++.+.+||.+
T Consensus 145 r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 145 RSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 0 0 002235777888776 69999999865
No 227
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.4e-15 Score=121.04 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=106.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-------eCCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-------~~~~~~lvDtpG~~~~~~~~~~~~~~~ 162 (269)
...++|+++|.+|+|||+++-++... ++...+. .|-.+.|.. ....+.+|||+|. +++.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~---~f~~~~~-sTiGIDFk~kti~l~g~~i~lQiWDtaGQ----------erf~ 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDD---SFNTSFI-STIGIDFKIKTIELDGKKIKLQIWDTAGQ----------ERFR 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhc---cCcCCcc-ceEEEEEEEEEEEeCCeEEEEEEEEcccc----------hhHH
Confidence 34679999999999999999999987 2222222 232222221 1345889999996 4556
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (269)
Q Consensus 163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 238 (269)
.+...|++. ++.+++|+|.....+... ..+++.+.++ ++|.++|.||+|+.....+.... -+....+ .
T Consensus 76 ti~~sYyrg---A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~--ge~lA~e---~ 147 (207)
T KOG0078|consen 76 TITTAYYRG---AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKER--GEALARE---Y 147 (207)
T ss_pred HHHHHHHhh---cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHH--HHHHHHH---h
Confidence 777788777 999999999875433332 3466666654 68999999999998643322211 1111122 2
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.+.+++||++|.||++.|..|.+.+.
T Consensus 148 G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 148 GIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred CCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 678999999999999999988877654
No 228
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.67 E-value=5.8e-16 Score=132.37 Aligned_cols=146 Identities=21% Similarity=0.331 Sum_probs=90.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCc-cccCC-CCCc--------------eeEe---eEEEeCCcEEEEcCCCCCCcchh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGV-VRTSD-KPGL--------------TQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~-~~~s~-~~gt--------------t~~~---~~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
+|+++|++|+|||||+|+|+..... ...+. ..|+ |... .+...+..+.+|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 4899999999999999999864211 00100 0111 1111 2223467899999999732
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 234 (269)
+.......+..+|.+++|+|+..+.......++..+...++|+++|+||+|+... +.......+++.+.
T Consensus 77 ---------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~~- 145 (268)
T cd04170 77 ---------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAALQEAFG- 145 (268)
T ss_pred ---------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHHHHHhC-
Confidence 1111112223499999999999877776677778888889999999999999865 34444455554432
Q ss_pred cCCCCCCeE--EeeCCCCCCHHHHHHH
Q 024325 235 NNSLVQPVM--MVSSKSGAGIRSLRTV 259 (269)
Q Consensus 235 ~~~~~~~vi--~vSa~~g~gi~~L~~~ 259 (269)
.+++ .++..+|.|+..+.+.
T Consensus 146 -----~~~~~~~ip~~~~~~~~~~vd~ 167 (268)
T cd04170 146 -----RPVVPLQLPIGEGDDFKGVVDL 167 (268)
T ss_pred -----CCeEEEEecccCCCceeEEEEc
Confidence 2333 3445666655444433
No 229
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.4e-16 Score=129.89 Aligned_cols=161 Identities=23% Similarity=0.295 Sum_probs=121.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccC-------------------CCCCceeEeeEE------------EeCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------------------DKPGLTQTINFF------------KLGTK 139 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-------------------~~~gtt~~~~~~------------~~~~~ 139 (269)
...+|.++|+...|||||..+|+|-+- ..-| .++.+...-.+. ..-..
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT-~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWT-DRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred cceEeeeeeecccchhhheehhhceee-echhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 456899999999999999999998631 0000 001110000000 01134
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcchHHHHHHHHhhC-CcEEEEEecCCCCC
Q 024325 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQVVLTKTDTVF 217 (269)
Q Consensus 140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl~~ 217 (269)
+.|+|.||+ +-++..+++.....|..++|+.++.+ .+++..+.+-.+.-.+ +.+++|-||+|+++
T Consensus 88 VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 88 VSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 889999996 56777888888889999999999864 4567777777777666 46999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 218 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+...+..+.++++++-....+.|++|+||..+.|||.|++.|.+.+.
T Consensus 155 ~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 155 RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 988888888888888776666789999999999999999999998763
No 230
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.67 E-value=3e-15 Score=127.47 Aligned_cols=126 Identities=19% Similarity=0.209 Sum_probs=81.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCc-cccCCC------CCceeE----------------eeEEEeCCcEEEEcCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDK------PGLTQT----------------INFFKLGTKLCLVDLPGYG 149 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~-~~~s~~------~gtt~~----------------~~~~~~~~~~~lvDtpG~~ 149 (269)
.+|+++|++|+|||||+++|+..... ...+.. ..++.| ..+...+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999854111 111100 111111 1233347789999999973
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+ +.......+..+|.+++|+|+..+.......+++.+...++|+++++||+|+.... .......++
T Consensus 83 d-------------f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l~ 148 (267)
T cd04169 83 D-------------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEIE 148 (267)
T ss_pred H-------------HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHHH
Confidence 2 11111122234999999999988776666677777777789999999999987653 223344555
Q ss_pred HHH
Q 024325 230 ESL 232 (269)
Q Consensus 230 ~~~ 232 (269)
+.+
T Consensus 149 ~~l 151 (267)
T cd04169 149 EEL 151 (267)
T ss_pred HHH
Confidence 443
No 231
>PTZ00258 GTP-binding protein; Provisional
Probab=99.66 E-value=1.5e-15 Score=134.41 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG 149 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~ 149 (269)
....+|+++|.||+|||||+|+|++. . ..++++|+||.+.+.... +..+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~-~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQ-Q-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcC-c-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 34568999999999999999999987 3 689999999988654332 2248999999997
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~ 185 (269)
...... ..+...++.....+|++++|+|+.
T Consensus 97 ~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEG------EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcch------hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 543221 234456666667799999999985
No 232
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.66 E-value=5.9e-15 Score=122.07 Aligned_cols=155 Identities=14% Similarity=0.016 Sum_probs=91.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...+|+++|++|||||||+++++.........+..+.......+ .....+.+|||+|... +..+...
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------~~~~~~~ 77 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------FGGLRDG 77 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh----------hhhhhHH
Confidence 45789999999999999997655431111112222222211111 1235688999999622 1222223
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+.. .++++++|+|.....+... ..++..+.. .+.|+++|+||+|+........... .... ....+++
T Consensus 78 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~----~~~~---~~~~~~e 147 (215)
T PTZ00132 78 YYI---KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQIT----FHRK---KNLQYYD 147 (215)
T ss_pred Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHH----HHHH---cCCEEEE
Confidence 332 3799999999875332221 122232221 3589999999999864322111111 1111 2457899
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||++|.|+++.+.+|.+.+-
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999998877653
No 233
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.66 E-value=2.5e-15 Score=118.38 Aligned_cols=151 Identities=18% Similarity=0.142 Sum_probs=95.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee---EEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~---~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+|+++|.+++|||||++++.+.. +...+..|. .+.. ... ....+.+||++|.... ..+...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE---FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF----------DSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS---TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG----------HHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhc---cccccccccccccccccccccccccccccccccccccc----------cccccc
Confidence 58999999999999999999872 223333332 2221 111 2345899999996321 222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
++. .+|++++++|..+..+... ..++..+... ..|+++|.||+|+........ +..++..... ..+++
T Consensus 68 ~~~---~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~--~~~~~~~~~~---~~~~~ 139 (162)
T PF00071_consen 68 FYR---NSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV--EEAQEFAKEL---GVPYF 139 (162)
T ss_dssp HHT---TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH--HHHHHHHHHT---TSEEE
T ss_pred ccc---ccccccccccccccccccccccccccccccccccccceeeeccccccccccchh--hHHHHHHHHh---CCEEE
Confidence 333 3899999999864211111 2344444332 479999999999886322211 1122222222 47899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+||+++.|+.+++..+.+.+.
T Consensus 140 e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 140 EVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEBTTTTTTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987764
No 234
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.66 E-value=4.8e-15 Score=136.98 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCC-------------------CceeE---eeEEEeCCcEEEEcCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKP-------------------GLTQT---INFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~-------------------gtt~~---~~~~~~~~~~~lvDtpG~ 148 (269)
..+|+++|++|+|||||+++|+.... +...+... |.|-. ..+...+..+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 34899999999999999999874211 11111110 11111 223344678999999997
Q ss_pred CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
.+- .......+..+|.+++|+|+..+.......++......++|+++++||+|+...
T Consensus 90 ~df-------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 90 EDF-------------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred hhh-------------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence 321 111122223499999999999888777778888888889999999999998753
No 235
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.65 E-value=5.6e-15 Score=134.31 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc-----------------------ccc------CCCCCceeEeeEE---EeCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------VRT------SDKPGLTQTINFF---KLGT 138 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-----------------------~~~------s~~~gtt~~~~~~---~~~~ 138 (269)
+..+|+++|+.++|||||+-+|+..... +.+ ....|.|-+..+. +.+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 3468999999999999999888742110 000 1123455555433 2356
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-C------cchHHHHHHHHhhCCc-EEEEE
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-K------PRDHELISLMERSQTK-YQVVL 210 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~------~~~~~~~~~l~~~~~p-~iiv~ 210 (269)
.+.++||||+ .++.......+..+|.+++|+|+..+. . .+..+.+..+...++| +++++
T Consensus 86 ~i~liDtPGh-------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGH-------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEECCCH-------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 7999999996 344455555566799999999998752 1 3455666667777885 68899
Q ss_pred ecCCCCCc----hHHHHHHHHHHHHHHhcC--CCCCCeEEeeCCCCCCHHH
Q 024325 211 TKTDTVFP----IDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 211 NK~Dl~~~----~~~~~~~~~~~~~~~~~~--~~~~~vi~vSa~~g~gi~~ 255 (269)
||+|+.+. ....+..+.+...+.... ....+++++||++|+|+.+
T Consensus 153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 99998632 234445556666665432 1246899999999999853
No 236
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=7.5e-15 Score=135.74 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=76.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCC-------------------CCceeE---eeEEEeCCcEEEEcCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDK-------------------PGLTQT---INFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~-------------------~gtt~~---~~~~~~~~~~~lvDtpG~ 148 (269)
..+|+++|++|+|||||+++|+.... +...+.. .|.|-. ..+...+..+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 35899999999999999999863211 1111111 111111 123334778999999997
Q ss_pred CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (269)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~ 217 (269)
.+ +.......+..+|.+++|+|+..++......+++.+...++|+++++||+|+..
T Consensus 91 ~d-------------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 91 ED-------------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred hh-------------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 31 111222223349999999999988777777788877778899999999999863
No 237
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.63 E-value=2.1e-15 Score=132.09 Aligned_cols=163 Identities=24% Similarity=0.207 Sum_probs=95.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..+|+|+|.+|+|||||||+|.|-. +.+.++.. .||....-+.. -+.+.+||.||++.+.-+ .
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~----------~ 103 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNFP----------P 103 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS------------H
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCCC----------H
Confidence 3689999999999999999998731 22333332 24444443332 357999999999765211 1
Q ss_pred HHHHh--cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch---------H----HHHHHHHHHH
Q 024325 166 KEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI---------D----VARRAMQIEE 230 (269)
Q Consensus 166 ~~~~~--~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~---------~----~~~~~~~~~~ 230 (269)
..|+. .....|.++++.+. .+...+.++...+...++|+++|.+|+|..-.. . +....+...+
T Consensus 104 ~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 104 EEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 22222 23347877666654 577888899999999999999999999962110 1 2333444455
Q ss_pred HHHhcCCCCCCeEEeeCCC--CCCHHHHHHHHHHhhhhh
Q 024325 231 SLKANNSLVQPVMMVSSKS--GAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 231 ~~~~~~~~~~~vi~vSa~~--g~gi~~L~~~i~~~~~~~ 267 (269)
.+.......+++|.||+.. ...+..|.+.|.+.+...
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 5554444567899999976 466888998888766544
No 238
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=9.4e-15 Score=128.04 Aligned_cols=155 Identities=23% Similarity=0.353 Sum_probs=125.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.|+..|+-..|||||+.++++.. +...-....|+|-|..+++. +..+.|+|+||+ ..++....
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-------------~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-------------PDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-------------HHHHHHHH
Confidence 47889999999999999999863 22334456789999987764 567999999998 45556666
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcE-EEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~-iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
.....+|.+++|||+.+++..+..+.+..+...+++- ++|+||+|+.++...+...+.+...+. -...+++.+|++
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l~~~~i~~~s~~ 145 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---LANAKIFKTSAK 145 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc---cccccccccccc
Confidence 7777799999999999999999999999998888764 999999999987766555555544433 235788999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 024325 249 SGAGIRSLRTVLSKIA 264 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~ 264 (269)
+|+||++|.+.|.+..
T Consensus 146 ~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 146 TGRGIEELKNELIDLL 161 (447)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999999887
No 239
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.63 E-value=1.3e-14 Score=119.79 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccC-CCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s-~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
+|+++|.+|+||||++|.|+|.. ....+ ...++|..+... ..+..+.+|||||+.++...+. +....+.+.+.
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE-VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--EIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc-ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--HHHHHHHHHHH
Confidence 69999999999999999999984 33332 223445554332 3478899999999976533221 22234444444
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhh-C----CcEEEEEecCCCCCchHHHHHHH-----HHHHHHHhcCCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPIDVARRAM-----QIEESLKANNSLV 239 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-~----~p~iiv~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~ 239 (269)
...+..+++++|++.. .++..+...++.+... + ..+++|+|.+|...+..+.+..+ .+++.+..+ .
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c---~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC---G 154 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT---T
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc---C
Confidence 4566799999999988 7787788887777652 2 46899999999887766544333 244444444 3
Q ss_pred CCeEEeeCC------CCCCHHHHHHHHHHhhhhh
Q 024325 240 QPVMMVSSK------SGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 240 ~~vi~vSa~------~g~gi~~L~~~i~~~~~~~ 267 (269)
..+..++.+ ....+.+|++.|.+.++..
T Consensus 155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 456666665 3456888998888877654
No 240
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=6.1e-15 Score=141.45 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC-ccc---------cCC------CCCceeEe---eEEEeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVR---------TSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~---------~s~------~~gtt~~~---~~~~~~~~~~lvDtpG~~~~ 151 (269)
...+|+++|+.|+|||||+++|+.... ... ..+ ..+.|... .+...+..+.+|||||+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 456899999999999999999985311 000 011 12223222 22334678999999997321
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
...... .+..+|++++|+|+..+.......++..+...++|+++|+||+|+...
T Consensus 87 ----------~~~~~~---~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 ----------TGEVER---SLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred ----------HHHHHH---HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 111122 223489999999999887777777888888889999999999999864
No 241
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.5e-15 Score=114.28 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=98.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-------eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-------NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-------~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
.+++.++|.+|+|||+|+.+++.+ +...+.+ .|-.+ .......++.+|||+|. +.+.+.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~k-rF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGq----------e~frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDK-RFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQ----------ESFRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhcc-Ccccccc---ceeeeeeceeEEEEcCceEEEEEEecCCc----------HHHHHH
Confidence 468999999999999999999998 3332222 33222 22223467999999997 445677
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
...|++. +-.+++|.|.....+... ..++..+.++ +.-++++.||+||....++.+..- ...... .+.
T Consensus 72 ~~syYr~---a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEG--eaFA~e---hgL 143 (216)
T KOG0098|consen 72 TRSYYRG---AAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEG--EAFARE---HGL 143 (216)
T ss_pred HHHHhcc---CcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHH--HHHHHH---cCc
Confidence 7777776 778899998764322221 2344444443 345788999999986544432211 111111 256
Q ss_pred CeEEeeCCCCCCHHHHHHHHHH
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~ 262 (269)
..+.+||++++|+++.|..+..
T Consensus 144 ifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 144 IFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred eeehhhhhhhhhHHHHHHHHHH
Confidence 7789999999999999965443
No 242
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=3.2e-14 Score=110.96 Aligned_cols=153 Identities=21% Similarity=0.267 Sum_probs=112.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcccc-------CC--CCCceeEeeEE----EeCCcEEEEcCCCCCCcchhHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------SD--KPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVK 158 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-------s~--~~gtt~~~~~~----~~~~~~~lvDtpG~~~~~~~~~~~ 158 (269)
..+|++.|+.++||||++.+++... ...+ +. ...||.-+.+. ..+..+.++||||+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq---------- 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ---------- 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccc-cceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc----------
Confidence 4689999999999999999999873 1111 11 11255544332 23478999999997
Q ss_pred HHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC
Q 024325 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 237 (269)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 237 (269)
+++..+.+.+.++ +..+++++|++.+.+.....+++.+.... +|+++++||.|+.+....++..+.+...+
T Consensus 79 ~RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----- 150 (187)
T COG2229 79 ERFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL----- 150 (187)
T ss_pred HHHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc-----
Confidence 3445555555555 89999999999877776678888888776 99999999999997655544444433221
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
...|+|.++|..++|..+.++.+...
T Consensus 151 ~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCceeeeecccchhHHHHHHHHHhh
Confidence 36899999999999999988877654
No 243
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.62 E-value=2.3e-14 Score=124.71 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
+..+.|+||+|.+.... .... .+|.+++++++..+ .+.+.+.. .......++|+||+|+.
T Consensus 148 g~d~viieT~Gv~qs~~---------~i~~-------~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSET---------AVAG-------MVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccchh---------HHHH-------hCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence 46699999999974311 1111 29999999864322 22221111 11223458999999998
Q ss_pred CchHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 217 FPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
...........+...+.... .+..|++++||++|.|+++|++.|.+.+.+
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 76655555556665554322 234789999999999999999999987654
No 244
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.9e-15 Score=118.19 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=101.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCC-CC---CceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KP---GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~---gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.++|+++|.+++|||-|+.+++.. ....-+. .. +.|+.+.......+..+|||+|. ++++.+...
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrn-EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ----------ERyrAitSa 82 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRN-EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ----------ERYRAITSA 82 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhccc-ccCcccccceeEEEEeeceeecCcEEEEeeecccch----------hhhccccch
Confidence 578999999999999999999987 3222221 11 12333333333456789999996 445666777
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~v 242 (269)
|++. +..+++|.|.....+... ..++..|..+ ++++++|.||+||..-..... ..+.+.+ ......
T Consensus 83 YYrg---AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae------~~~l~f 153 (222)
T KOG0087|consen 83 YYRG---AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE------KEGLFF 153 (222)
T ss_pred hhcc---cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHH------hcCceE
Confidence 7776 888999999875433332 4566666554 578999999999986211111 0111111 124678
Q ss_pred EEeeCCCCCCHHHHHHHHHHh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~ 263 (269)
+.+||..+.|++..++.+...
T Consensus 154 ~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 154 LETSALDATNVEKAFERVLTE 174 (222)
T ss_pred EEecccccccHHHHHHHHHHH
Confidence 999999999999999766543
No 245
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.60 E-value=5.8e-15 Score=110.48 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--E-eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
..+.++|--|+|||||+|.+..... +.+.+.|...+.. + ....+.+||.||... +..+-+.|.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~----~edmiptvGfnmrk~tkgnvtiklwD~gGq~r----------frsmWeryc 86 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQY----LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSMWERYC 86 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccc----hhhhcccccceeEEeccCceEEEEEecCCCcc----------HHHHHHHHh
Confidence 4799999999999999998776411 1222233333322 2 245688999999742 244444555
Q ss_pred hcccccceEEEEEeCCCC--CCcchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~--~~~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+. +++++|++|++++ ++....++.+.+.. .++|+++..||.|+.++-........+. +.........++.
T Consensus 87 R~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmg--L~sitdREvcC~s 161 (186)
T KOG0075|consen 87 RG---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMG--LSSITDREVCCFS 161 (186)
T ss_pred hc---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhC--ccccccceEEEEE
Confidence 54 9999999999863 22233455555544 4799999999999987654443333221 1111222456899
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
|||+...|+|.+.+||.+.-.
T Consensus 162 iScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhh
Confidence 999999999999999988654
No 246
>PRK13768 GTPase; Provisional
Probab=99.60 E-value=1.5e-14 Score=122.38 Aligned_cols=122 Identities=25% Similarity=0.317 Sum_probs=80.4
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHH-----hhCCcEEEEEec
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK 212 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~-----~~~~p~iiv~NK 212 (269)
..+.++||||..+.... ...+..+.+.... .. .+++++|+|+.......+.....++. ..++|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~-~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF---RESGRKLVERLSG-SS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHh-cC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 35999999997543221 2223333333322 22 78999999998765555544433332 468999999999
Q ss_pred CCCCCchHHHHHHHHHHH------------------------HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 213 TDTVFPIDVARRAMQIEE------------------------SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 213 ~Dl~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+|+.+..+.......+.. .+... ....+++++||++++|+++|+++|.+.+.
T Consensus 172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEET-GLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHH-CCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 999987665444333331 11111 12368999999999999999999988764
No 247
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.4e-14 Score=122.99 Aligned_cols=153 Identities=20% Similarity=0.274 Sum_probs=105.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC-----------------------cc------ccCCCCCceeEee---EEEeCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------VV------RTSDKPGLTQTIN---FFKLGT 138 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-----------------------~~------~~s~~~gtt~~~~---~~~~~~ 138 (269)
...+++++|++++|||||+-+|+-... .+ ......|.|-+.. |.+..+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 346899999999999999988763210 00 0112345566653 333456
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCC-cEEEEE
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~-p~iiv~ 210 (269)
.++++|+||+ ++++...+.....+|+.++|||++.+ ...+..+.+-.....++ .+|+++
T Consensus 86 ~~tIiDaPGH-------------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVav 152 (428)
T COG5256 86 NFTIIDAPGH-------------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAV 152 (428)
T ss_pred eEEEeeCCch-------------HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEE
Confidence 6999999996 46677778888889999999999876 55666666666666665 589999
Q ss_pred ecCCCCCch--HHHHHHHHHHHHHHhcC--CCCCCeEEeeCCCCCCHHHH
Q 024325 211 TKTDTVFPI--DVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 211 NK~Dl~~~~--~~~~~~~~~~~~~~~~~--~~~~~vi~vSa~~g~gi~~L 256 (269)
||+|+++-. ..++....+...+.... ....+++|||+..|+|+.+-
T Consensus 153 NKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 153 NKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 999999632 23334444444332222 22467999999999998754
No 248
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.6e-14 Score=105.95 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|..|+|||.|+.+++... .+++.-.....|...-+ ...++.+|||+|. ++++.+..
T Consensus 7 lfkivlvgnagvgktclvrrftqgl--fppgqgatigvdfmiktvev~gekiklqiwdtagq----------erfrsitq 74 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ----------ERFRSITQ 74 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC--CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch----------HHHHHHHH
Confidence 4689999999999999999999762 22222221223333222 2456899999995 56677788
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.|++. ++++++|.|.+...+... .+++..+++. ++--|+|.||+|+.+..++.... -+.+.... ..-+
T Consensus 75 syyrs---ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qi---geefs~~q--dmyf 146 (213)
T KOG0095|consen 75 SYYRS---AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQI---GEEFSEAQ--DMYF 146 (213)
T ss_pred HHhhh---cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHH---HHHHHHhh--hhhh
Confidence 88776 899999999874322222 3555555542 34468999999998765544322 11111111 1235
Q ss_pred EEeeCCCCCCHHHHHHHHHH
Q 024325 243 MMVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~ 262 (269)
+.+||+..+|++.|+..+.-
T Consensus 147 letsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhcccchhhHHHHHHHHHH
Confidence 78999999999999976643
No 249
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.3e-15 Score=115.01 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=109.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
..-.+|+++|--||||||++..|--. ++..+.|..|.......+ .+..+.+||..|... .+..|....
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~-E~vttvPTiGfnVE~v~y-kn~~f~vWDvGGq~k------~R~lW~~Y~---- 82 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLG-EIVTTVPTIGFNVETVEY-KNISFTVWDVGGQEK------LRPLWKHYF---- 82 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccC-CcccCCCccccceeEEEE-cceEEEEEecCCCcc------cccchhhhc----
Confidence 34458999999999999999998776 334344443433333332 388899999999732 333444332
Q ss_pred hcccccceEEEEEeCCCC--CCcchHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~--~~~~~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
. +.+.++||+|+++. +.....++...+... +.|+++..||.|+..+-...++.+.+. +.........+-.
T Consensus 83 ~---~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~--l~~l~~~~w~iq~ 157 (181)
T KOG0070|consen 83 Q---NTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG--LHSLRSRNWHIQS 157 (181)
T ss_pred c---CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhh--hhccCCCCcEEee
Confidence 2 38999999999853 223334555555443 579999999999987766555444333 2233334566888
Q ss_pred eeCCCCCCHHHHHHHHHHhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++|.+|+|+.+-++||...+..
T Consensus 158 ~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 158 TCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred ccccccccHHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 250
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.5e-14 Score=105.55 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=99.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
.+++++|..|+|||||+++|-|.+ .. +--|+-+.|...+ .+||||-... ..........+.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~-~l-----ykKTQAve~~d~~----~IDTPGEy~~---------~~~~Y~aL~tt~ 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND-TL-----YKKTQAVEFNDKG----DIDTPGEYFE---------HPRWYHALITTL 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch-hh-----hcccceeeccCcc----ccCCchhhhh---------hhHHHHHHHHHh
Confidence 379999999999999999999984 11 1134555554333 4999996431 122333344455
Q ss_pred cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g 252 (269)
..+|++++|-.+.++.+.....++. -...|+|-|++|+|+.++.+++.....+.+. ...++|.+|+.+..|
T Consensus 63 ~dadvi~~v~~and~~s~f~p~f~~---~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea------Ga~~IF~~s~~d~~g 133 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPPGFLD---IGVKKVIGVVTKADLAEDADISLVKRWLREA------GAEPIFETSAVDNQG 133 (148)
T ss_pred hccceeeeeecccCccccCCccccc---ccccceEEEEecccccchHhHHHHHHHHHHc------CCcceEEEeccCccc
Confidence 5689999998877654444333322 2346799999999999877766555544432 257899999999999
Q ss_pred HHHHHHHHHHh
Q 024325 253 IRSLRTVLSKI 263 (269)
Q Consensus 253 i~~L~~~i~~~ 263 (269)
+++|++.|...
T Consensus 134 v~~l~~~L~~~ 144 (148)
T COG4917 134 VEELVDYLASL 144 (148)
T ss_pred HHHHHHHHHhh
Confidence 99999998653
No 251
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.58 E-value=9.9e-14 Score=114.79 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=96.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-e-eEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-T-QTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t-~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.+|+++|.+|||||||+++|.+.. . ...++.| . ........ ...+.+|||+|+. .+..+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~----------~~~~~~~ 72 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE-F--PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE----------EYRSLRP 72 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc-C--cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH----------HHHHHHH
Confidence 589999999999999999999873 2 2222222 2 22222222 2348899999962 2334455
Q ss_pred HHHhcccccceEEEEEeCCCC--CCcchHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHH----------HHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAM----------QIEES 231 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~--~~~~~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~----------~~~~~ 231 (269)
.|... ++.+++++|.... .......+...+... ..|+++|.||+|+........... .....
T Consensus 73 ~y~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 73 EYYRG---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred HHhcC---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 55444 8899999987641 222223444444443 489999999999997643221110 00000
Q ss_pred HHhcCCCCCCeEEeeCC--CCCCHHHHHHHHHHhhh
Q 024325 232 LKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 232 ~~~~~~~~~~vi~vSa~--~g~gi~~L~~~i~~~~~ 265 (269)
..........++.+|++ ++.|+++++..+...+.
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 00111112338999999 99999999988877663
No 252
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.58 E-value=4.4e-14 Score=116.59 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=78.8
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-----HHHHHHHHhhCCcEEEEEecC
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLTKT 213 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-----~~~~~~l~~~~~p~iiv~NK~ 213 (269)
.++++||||..+.+.+..- ..++-..+.+.. .-+++||+|....-.+.. ......+.+...|+|+|+||+
T Consensus 117 ~~~liDTPGQIE~FtWSAs----GsIIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSAS----GSIITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred CEEEEcCCCceEEEEecCC----ccchHhhHhhcC-CeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecc
Confidence 3899999999876443211 122222222211 457889999875433332 344456677889999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCC---------------------CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 214 DTVFPIDVARRAMQIEESLKANNS---------------------LVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
|+.++.-..++...+..+-..... .....+.|||.+|+|+++++..+...+.
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 999886665555443322111110 1456899999999999999999877654
No 253
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.58 E-value=5.3e-14 Score=137.42 Aligned_cols=147 Identities=22% Similarity=0.322 Sum_probs=99.6
Q ss_pred CChHHHHHHHhcCcCccccCCCCCceeEeeEEEeC---------------------CcEEEEcCCCCCCcchhHHHHHHH
Q 024325 103 VGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---------------------TKLCLVDLPGYGFAYAKEEVKDAW 161 (269)
Q Consensus 103 ~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~---------------------~~~~lvDtpG~~~~~~~~~~~~~~ 161 (269)
++||||+.+|.+. .+ .....-|.|+++-.+... +.+.||||||+.. +
T Consensus 472 ~~KTtLLD~iR~t-~v-~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~----------F 539 (1049)
T PRK14845 472 VHNTTLLDKIRKT-RV-AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA----------F 539 (1049)
T ss_pred cccccHHHHHhCC-Cc-ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH----------H
Confidence 3599999999998 33 334455678876433211 2389999999621 1
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--------------HHHHHHH
Q 024325 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------------VARRAMQ 227 (269)
Q Consensus 162 ~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~ 227 (269)
..+. ......+|++++|+|++.++..++.+.+..+...++|+++|+||+|+.+... .....+.
T Consensus 540 ~~lr---~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 540 TSLR---KRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred HHHH---HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 2222 2233458999999999988888888888888888999999999999974311 0111111
Q ss_pred HHH-------HHHhc------------CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 228 IEE-------SLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 228 ~~~-------~~~~~------------~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+.. .+... .....++++|||++|+|+++|+++|....
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111 11111 12357899999999999999999987544
No 254
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3.8e-14 Score=130.14 Aligned_cols=160 Identities=23% Similarity=0.365 Sum_probs=115.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-------------------CCcEEEEcCCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-------------------GTKLCLVDLPGYG 149 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-------------------~~~~~lvDtpG~~ 149 (269)
..|.+||+|+..+|||-|+..+.+.. ..-+...|+|+.+. |+.. -+.+.+|||||+
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh- 550 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH- 550 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc-
Confidence 46899999999999999999999873 45566667777652 2221 145899999996
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH------H--
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID------V-- 221 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~------~-- 221 (269)
..+.+--.+....||++|+|+|..+++.++..+.+++|...+.|+|+++||+|.+.... +
T Consensus 551 ------------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~ 618 (1064)
T KOG1144|consen 551 ------------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVE 618 (1064)
T ss_pred ------------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHH
Confidence 23333333445569999999999999999999999999999999999999999974311 1
Q ss_pred --H----HHHHHHHHHH-------Hh--------c----CCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 222 --A----RRAMQIEESL-------KA--------N----NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 222 --~----~~~~~~~~~~-------~~--------~----~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
. .....++..+ .. + ......++|+||.+|+||.+|+-+|....+
T Consensus 619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0 0111111111 11 0 011356899999999999999999988654
No 255
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.58 E-value=3.1e-14 Score=124.77 Aligned_cols=85 Identities=24% Similarity=0.319 Sum_probs=66.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e-C-----------------CcEEEEcCCCCCCcc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGFAY 152 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~-~-----------------~~~~lvDtpG~~~~~ 152 (269)
++|+++|.||+|||||+|+|++. . +.++++|+||.+.+... . + ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~-~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA-G-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-C-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 58999999999999999999998 4 78999999998865321 1 1 248999999997643
Q ss_pred hhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~ 185 (269)
... ..+...++.....+|++++|+|+.
T Consensus 81 ~~g------~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKG------EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChH------HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 221 234556777777799999999985
No 256
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.3e-13 Score=115.66 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=117.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCceeEeeEEEe------------CCcEEEEcCCCCCCcchhH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYAKE 155 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~~~~~~~~------------~~~~~lvDtpG~~~~~~~~ 155 (269)
.+++++|+..+|||||..+|..-. +....|...|.|.|.-|... ...+.++|+||.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH------- 80 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH------- 80 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-------
Confidence 689999999999999999987531 12234556677777655432 234799999997
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH----HHHHHHHHHHH
Q 024325 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID----VARRAMQIEES 231 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~----~~~~~~~~~~~ 231 (269)
..+++..+....-.|+.++|+|+..+.+++..+.+-.-.......++|+||+|..+... +++....+.+-
T Consensus 81 ------asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 81 ------ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred ------HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 46667777777779999999999989888887766555555678899999999987643 33333444444
Q ss_pred HHhcCC-CCCCeEEeeCCCC----CCHHHHHHHHHHhh
Q 024325 232 LKANNS-LVQPVMMVSSKSG----AGIRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~~-~~~~vi~vSa~~g----~gi~~L~~~i~~~~ 264 (269)
+....- ...|++++||+.| ++|.+|.+.|...+
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 444332 3489999999999 89999999887654
No 257
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.56 E-value=2.9e-14 Score=116.24 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=108.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+--+|+++|.|++|||||+..++..+ +....+.+||..+. ..+.|..+.++|.||+.+..++..- -.++
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkG------RGRQ 132 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKG------RGRQ 132 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCC------CCce
Confidence 44589999999999999999999875 56777888887763 4456888999999999765332210 1134
Q ss_pred HHhcccccceEEEEEeCCCCCCcc------------------------------------------h-------------
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPR------------------------------------------D------------- 192 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~------------------------------------------~------------- 192 (269)
..+....+|++++|+|+....... +
T Consensus 133 viavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI 212 (364)
T KOG1486|consen 133 VIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKI 212 (364)
T ss_pred EEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHee
Confidence 445556689999999986421110 0
Q ss_pred -------------HHHHHHHHhhC--CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325 193 -------------HELISLMERSQ--TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257 (269)
Q Consensus 193 -------------~~~~~~l~~~~--~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~ 257 (269)
.++++.+..+. ++++.|.||+|.++-++..+... .+.-+-+||.-..|++.|+
T Consensus 213 ~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr------------~PnsvViSC~m~lnld~ll 280 (364)
T KOG1486|consen 213 HNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLAR------------QPNSVVISCNMKLNLDRLL 280 (364)
T ss_pred ccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhc------------CCCcEEEEeccccCHHHHH
Confidence 01112222222 46889999999987655543221 2456889999999999999
Q ss_pred HHHHHhhhhh
Q 024325 258 TVLSKIARFA 267 (269)
Q Consensus 258 ~~i~~~~~~~ 267 (269)
+.|++.+.-.
T Consensus 281 e~iWe~l~L~ 290 (364)
T KOG1486|consen 281 ERIWEELNLV 290 (364)
T ss_pred HHHHHHhceE
Confidence 9999987543
No 258
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.55 E-value=1.3e-13 Score=118.02 Aligned_cols=123 Identities=21% Similarity=0.216 Sum_probs=84.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+||||++|+|++. ..+.++...+++.... ....+..+.+|||||+.+..... +........
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~---e~~~~~ik~ 112 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN---DQAVNIIKR 112 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH---HHHHHHHHH
Confidence 4578999999999999999999998 5667777766544432 22347789999999997652211 112233444
Q ss_pred HHhcccccceEEEEEeCC-CCCCcchHHHHHHHHhh-----CCcEEEEEecCCCCCc
Q 024325 168 YVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 218 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~-----~~p~iiv~NK~Dl~~~ 218 (269)
|... ...|+++||...+ ..+...+.++++.+... -.++|+|+|++|..++
T Consensus 113 ~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred Hhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 4433 3589999995433 24555667777766542 2579999999998854
No 259
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.55 E-value=5e-14 Score=105.60 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-ceeEeeEEEe-----CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-tt~~~~~~~~-----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
+..+|+|.+|+|||||+-++... .+..++.. +..|....+. ..++.+|||+|. +++..+..
T Consensus 9 fkllIigDsgVGKssLl~rF~dd---tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------ErFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD---TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------ERFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc---ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH----------HHHHHHHH
Confidence 45789999999999999998876 23333322 2233333333 245889999995 56677777
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
.|+++ .+++++|.|..++..... ..+++.+... ..|-++|.||.|..+....... ..... ....+..+|
T Consensus 76 tyyrg---thgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~--dAr~~---A~~mgie~F 147 (198)
T KOG0079|consen 76 TYYRG---THGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTE--DARAF---ALQMGIELF 147 (198)
T ss_pred HHccC---CceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehH--HHHHH---HHhcCchhe
Confidence 77776 899999999876543332 4566666543 4788999999998764322111 11111 112367889
Q ss_pred EeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
.+|||..+|++..|.-|-+.+-.+
T Consensus 148 ETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 148 ETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred ehhhhhcccchHHHHHHHHHHHHH
Confidence 999999999999999887766443
No 260
>PRK12740 elongation factor G; Reviewed
Probab=99.55 E-value=7.2e-14 Score=133.77 Aligned_cols=108 Identities=22% Similarity=0.260 Sum_probs=73.5
Q ss_pred EcCCCCChHHHHHHHhcCcCc-cccC---------C------CCCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHH
Q 024325 98 AGRSNVGKSSMLNALTRQWGV-VRTS---------D------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK 158 (269)
Q Consensus 98 vG~~~~GKSsLin~l~~~~~~-~~~s---------~------~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~ 158 (269)
+|++|+|||||+++|+..... ...+ + ..|.|.+. .+...+..+.+|||||...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 599999999999999654211 0111 1 12333332 2334477899999999732
Q ss_pred HHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
+.......+..+|++++|+|++.+.......++..+...++|+++|+||+|+...
T Consensus 73 -----~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 -----FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred -----HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 1111122223499999999999877777777778787788999999999998753
No 261
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.55 E-value=2e-13 Score=111.63 Aligned_cols=140 Identities=13% Similarity=0.097 Sum_probs=81.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce---eEeeEEEe--------CCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKL--------GTKLCLVDLPGYGFAYAKEEVKDAWE 162 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt---~~~~~~~~--------~~~~~lvDtpG~~~~~~~~~~~~~~~ 162 (269)
+|+++|.+|+|||||++++++.. +...+..|. ........ ...+.+|||+|... +.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~---f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~----------~~ 68 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ---VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES----------VK 68 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC---CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------HH
Confidence 69999999999999999999873 222222221 11111111 23588999999622 23
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----------------------hCCcEEEEEecCCCCCch
Q 024325 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----------------------SQTKYQVVLTKTDTVFPI 219 (269)
Q Consensus 163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----------------------~~~p~iiv~NK~Dl~~~~ 219 (269)
.+...|+.. +|++++|+|.+...+... ..++..+.. .++|+++|.||+|+.+..
T Consensus 69 ~l~~~~yr~---ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 69 STRAVFYNQ---VNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHHHhCc---CCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 344444443 999999999876433222 233333322 257999999999997542
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325 220 DVARRAMQIEESLKANNSLVQPVMMVSSKSG 250 (269)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g 250 (269)
.............. ....+.|-+.++|+..
T Consensus 146 ~~~~~~~~~~~~~i-a~~~~~~~i~~~c~~~ 175 (202)
T cd04102 146 ESSGNLVLTARGFV-AEQGNAEEINLNCTNG 175 (202)
T ss_pred ccchHHHhhHhhhH-HHhcCCceEEEecCCc
Confidence 22111111000000 0123577888888864
No 262
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.55 E-value=1.9e-13 Score=119.82 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=103.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCc---Ccc-----------ccCCCCC---ceeEeeEEE-------e----CCcEE
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPG---LTQTINFFK-------L----GTKLC 141 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~---~~~-----------~~s~~~g---tt~~~~~~~-------~----~~~~~ 141 (269)
.+.+.|+++|+.|+|||||+|++.+.- .++ .+++.+| ||.+..+.. . ..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 345689999999999999999999861 123 6788899 888876621 1 26799
Q ss_pred EEcCCCCCCcchhHH--------HHHHHHH-----------HHHHHHhcccccceEEEEE-eCC------CCCCcchHHH
Q 024325 142 LVDLPGYGFAYAKEE--------VKDAWEE-----------LVKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHEL 195 (269)
Q Consensus 142 lvDtpG~~~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~d~vl~vi-d~~------~~~~~~~~~~ 195 (269)
++||+|+...-.... +...|-+ -.+..+. ..+++.++|. |++ ......+.++
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~--dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ--EHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH--hcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 999999964311100 0000100 0111111 1388888888 875 3345556789
Q ss_pred HHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 196 ~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
++.|+..++|+++|+||+|-..+. .......+.+.+ ..|++++||.+-. -+++...+.+.
T Consensus 173 i~eLk~~~kPfiivlN~~dp~~~e-t~~l~~~l~eky------~vpvl~v~c~~l~-~~DI~~il~~v 232 (492)
T TIGR02836 173 IEELKELNKPFIILLNSTHPYHPE-TEALRQELEEKY------DVPVLAMDVESMR-ESDILSVLEEV 232 (492)
T ss_pred HHHHHhcCCCEEEEEECcCCCCch-hHHHHHHHHHHh------CCceEEEEHHHcC-HHHHHHHHHHH
Confidence 999999999999999999944332 222222332221 4788999996543 44444444443
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=2.4e-14 Score=126.12 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=108.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc-------------cccCCCCCceeEee-----EEE---eCCcEEEEcCCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTIN-----FFK---LGTKLCLVDLPGYG 149 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-------------~~~s~~~gtt~~~~-----~~~---~~~~~~lvDtpG~~ 149 (269)
...+.+++-+-..|||||-.+|+..... -......|.|-..+ +.. ..+.+.++||||+-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 3457899999999999999998754210 01123445554433 222 13568899999985
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+- .-+..+.+..|...++|+|++.+...+...-.-..-.++..++.|+||+||..+ +.++..+.+.
T Consensus 88 DF-------------sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A-dpervk~eIe 153 (603)
T COG0481 88 DF-------------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA-DPERVKQEIE 153 (603)
T ss_pred ce-------------EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC-CHHHHHHHHH
Confidence 42 111122233389999999999988777654444444568899999999999865 4556666666
Q ss_pred HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.+.- .....+.+|||+|.|++++++.|.+.+.
T Consensus 154 ~~iGi---d~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 154 DIIGI---DASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHhCC---CcchheeEecccCCCHHHHHHHHHhhCC
Confidence 65532 2345799999999999999999998764
No 264
>PTZ00416 elongation factor 2; Provisional
Probab=99.54 E-value=1.6e-13 Score=133.60 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=81.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee---------------Ee---eEEEe----------CCcEEEE
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---------------TI---NFFKL----------GTKLCLV 143 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~---------------~~---~~~~~----------~~~~~lv 143 (269)
..+|+++|+.++|||||+++|+.... .......|+++ +. .+... +..+.++
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAG-IISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 45899999999999999999987522 11122223322 11 11111 3458999
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 144 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
||||+. .+.......+..+|++++|+|+..++..++..++..+...++|+++++||+|+.
T Consensus 98 DtPG~~-------------~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHV-------------DFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHH-------------hHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999973 233344555566999999999999999999999999988899999999999997
No 265
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.54 E-value=5.7e-13 Score=111.10 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=60.4
Q ss_pred CcEEEEcCCCCCCcc--h-hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhhCCcEEEEEecC
Q 024325 138 TKLCLVDLPGYGFAY--A-KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT 213 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~ 213 (269)
+.+.++||||+.... . .......+..+...|+... .+++++|+|+..++...+ .++.+.+...+.|+++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECC
Confidence 459999999996421 1 2334555667777776642 468999999987777776 588888888899999999999
Q ss_pred CCCCch
Q 024325 214 DTVFPI 219 (269)
Q Consensus 214 Dl~~~~ 219 (269)
|...+.
T Consensus 203 D~~~~~ 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCcc
Confidence 998754
No 266
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=1.3e-13 Score=104.75 Aligned_cols=151 Identities=18% Similarity=0.134 Sum_probs=96.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee----EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~----~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
.++|.++|.+|+|||||+-++... ... +...+|-.+. ... ...++-+|||+|. +.++.+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~-~fd---~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq----------ErFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSN-TFD---DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ----------ERFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhc-ccC---ccCCceeeeeEEEEEEEEcCceEEEEEEeccch----------Hhhhcc
Confidence 478999999999999999999876 222 2222332222 122 2456889999996 456677
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh----CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
...|++. +..+++|.|.....+... ..+++.+... ++-.++|.||+|.-+...+.+. +-++ +.+. ..
T Consensus 77 TpSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~re-EG~k-fAr~---h~ 148 (209)
T KOG0080|consen 77 TPSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDRE-EGLK-FARK---HR 148 (209)
T ss_pred CHhHhcc---CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHH-HHHH-HHHh---hC
Confidence 7788877 889999999864322222 2333444332 3345789999996532222111 1111 1111 13
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.-.+.+||++.+|+...|+.+...+
T Consensus 149 ~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 149 CLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred cEEEEcchhhhccHHHHHHHHHHHH
Confidence 5578999999999999998887765
No 267
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.53 E-value=1.7e-13 Score=133.64 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=82.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee---------------Ee---eEEE----------------e
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---------------TI---NFFK----------------L 136 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~---------------~~---~~~~----------------~ 136 (269)
...+|+++|+.++|||||+++|+...+ .......|.++ +. .+.+ .
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcC-CcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 356899999999999999999986532 11112222222 11 1111 1
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
+..++++||||+ .++.......+..+|.+++|+|+..+...++..+++.+...++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh-------------~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGH-------------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCH-------------HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 456789999997 2334444455556999999999999999999999999988999999999999998
No 268
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.4e-13 Score=106.03 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..|+|+|.-|||||||+.++-... ....++.+. +|...+..+ ....+.+||..|. ...+..|..+.
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~-~tvgLnig~i~v~~~~l~fwdlgGQ------e~lrSlw~~yY 90 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKIT-PTVGLNIGTIEVCNAPLSFWDLGGQ------ESLRSLWKKYY 90 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHee-cccceeecceeeccceeEEEEcCCh------HHHHHHHHHHH
Confidence 479999999999999998865432 111122221 222222211 2567899999995 34455666554
Q ss_pred HHHHhcccccceEEEEEeCCCC--CCcchHH---HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWG--VKPRDHE---LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~--~~~~~~~---~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
.. ++++++++|+.+. +...... ++..=...+.|+++.+||-|+-+..+..+....+.. .........
T Consensus 91 ~~-------~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~ 162 (197)
T KOG0076|consen 91 WL-------AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDN 162 (197)
T ss_pred HH-------hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccC
Confidence 43 9999999999853 1111112 222222347999999999999877665554433332 233334567
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
++.||||.+|+|+++-..|+...+...
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHHhhc
Confidence 899999999999999999999887654
No 269
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.51 E-value=3.4e-13 Score=114.99 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=108.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc---------cccC----------------------CCCCceeEeeEE---Ee
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTS----------------------DKPGLTQTINFF---KL 136 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~---------~~~s----------------------~~~gtt~~~~~~---~~ 136 (269)
...+++.+|...-||||||-+|+..... ...| ...|.|-|+-+. +.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4568999999999999999998854210 0111 234577777543 34
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl 215 (269)
..+|.+.||||+ +++.+.+..+...||+.+++||+..++..+..+..-...-.++ .+++++||+||
T Consensus 85 KRkFIiADTPGH-------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGH-------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcH-------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 678999999997 4566677777888999999999999888877654444444455 48899999999
Q ss_pred CCch--HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325 216 VFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 216 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~ 255 (269)
++-. ....+...+..+..........++|+||+.|.|+-.
T Consensus 152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 9743 234444555555555544455789999999999853
No 270
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.51 E-value=2.3e-13 Score=116.45 Aligned_cols=141 Identities=23% Similarity=0.396 Sum_probs=88.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccC-CCCC------ceeEeeE----EE---eCCcEEEEcCCCCCCcchhH---
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPG------LTQTINF----FK---LGTKLCLVDLPGYGFAYAKE--- 155 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-~~~g------tt~~~~~----~~---~~~~~~lvDtpG~~~~~~~~--- 155 (269)
++|+++|.+|+|||||||.|++.. ..... ..+. .+..+.. .. ....+.++||||+++.....
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999973 22221 1111 1111111 11 13458899999999764322
Q ss_pred -HHHHHHHHHHHHHHhcc----------cccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325 156 -EVKDAWEELVKEYVSTR----------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (269)
Q Consensus 156 -~~~~~~~~~~~~~~~~~----------~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~ 223 (269)
.+......-...|+... ..+|+++|++++. +++.+.|.+.++.|.. .+++|.|+.|+|.+.+.++..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~el~~ 162 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPEELQA 162 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCHHHHHH
Confidence 22222121112222210 1278899999975 5788889888888875 489999999999999999988
Q ss_pred HHHHHHHHHHhc
Q 024325 224 RAMQIEESLKAN 235 (269)
Q Consensus 224 ~~~~~~~~~~~~ 235 (269)
..+.+.+.+...
T Consensus 163 ~k~~i~~~l~~~ 174 (281)
T PF00735_consen 163 FKQRIREDLEEN 174 (281)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 888888877765
No 271
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.2e-13 Score=117.88 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=68.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---------------------CCcEEEEcCCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGF 150 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---------------------~~~~~lvDtpG~~~ 150 (269)
.++++|||.||+|||||+|+++.. . +...++|+||-+.+.... ...+.|+|.+|+-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~-~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKA-G-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcC-C-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 357999999999999999999998 4 788999999988653211 23488999999865
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~ 185 (269)
..+.. +.+-+.|+.....+|++++|+|+.
T Consensus 80 GAs~G------eGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 80 GASKG------EGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CcccC------CCcchHHHHhhhhcCeEEEEEEec
Confidence 53322 345677888888899999999986
No 272
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.51 E-value=3.2e-13 Score=109.68 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=100.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE-----EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~-----~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||+|...+.+. .++..+.+|..|... ......+.++||+|..+ +..+...
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~---~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~----------~~~~~~~ 70 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTG---RFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE----------FSAMRDL 70 (196)
T ss_pred eEEEEECCCCCCcchheeeeccc---ccccccCCCccccceEEEEECCEEEEEEEEcCCCccc----------ChHHHHH
Confidence 58999999999999999998887 356666666665321 11234577999999432 2344445
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHH----HhhCCcEEEEEecCCCCCchHHHHH-HHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (269)
|+.. .+..++|++..+..+... ..+.+.+ ....+|+++|.||+|+......... -+.+ . ..+..+
T Consensus 71 ~~~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l---a---~~~~~~ 141 (196)
T KOG0395|consen 71 YIRN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL---A---RSWGCA 141 (196)
T ss_pred hhcc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH---H---HhcCCc
Confidence 5554 788888888765333222 2333334 2235799999999999763222111 1122 1 123567
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++.+||+...+++++|..|.+.++.
T Consensus 142 f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 142 FIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred EEEeeccCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999887654
No 273
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.1e-13 Score=106.51 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=95.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-eeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
.+.|.++|..++|||+|+-.|.... ....++..... ..+......+.+||.||+.. .+.-...|+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r----------lR~kl~e~~~ 104 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRLGSENVTLVDLPGHSR----------LRRKLLEYLK 104 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEeecCcceEEEeCCCcHH----------HHHHHHHHcc
Confidence 3689999999999999998877652 11111111111 12333345579999999722 1222334444
Q ss_pred cccccceEEEEEeCCCCCCcchH----HHHHHHH-----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc------
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRDH----ELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN------ 235 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~------ 235 (269)
+...+.+++||+|+.. +...-. .+.+.+. ....|++++.||.|+..+...+.+.+.++..+...
T Consensus 105 ~~~~akaiVFVVDSa~-f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa 183 (238)
T KOG0090|consen 105 HNYSAKAIVFVVDSAT-FLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSA 183 (238)
T ss_pred ccccceeEEEEEeccc-cchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 4456899999999873 233222 2233332 24578999999999987644433333333222110
Q ss_pred ---------------------------CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 236 ---------------------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 236 ---------------------------~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
......+.+.|+++| +++++.+||.+.+
T Consensus 184 ~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 184 LRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred hhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 001223567888888 8999999998753
No 274
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.50 E-value=1.1e-13 Score=109.73 Aligned_cols=109 Identities=24% Similarity=0.390 Sum_probs=70.5
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---------------------------------------
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------------------------------------- 135 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--------------------------------------- 135 (269)
|+++|..++|||||+|+|+|. .+..++..|.|..-+.+..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~-~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGR-PILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS-S-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhc-ccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 789999999999999999998 5555544443322111000
Q ss_pred -------------------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHH
Q 024325 136 -------------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196 (269)
Q Consensus 136 -------------------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~ 196 (269)
....+.|+||||+.+....+ ..+...|+ ..+|++++|+++...+...+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~------~~~~~~~~---~~~d~vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH------TEITEEYL---PKADVVIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT------SHHHHHHH---STTEEEEEEEETTSTGGGHHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhh------HHHHHHhh---ccCCEEEEEeccCcccchHHHHHH
Confidence 01238999999996642222 13444554 349999999999876666655544
Q ss_pred HH-HHhhCCcEEEEEecC
Q 024325 197 SL-MERSQTKYQVVLTKT 213 (269)
Q Consensus 197 ~~-l~~~~~p~iiv~NK~ 213 (269)
.. .......+++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 43 444556799999995
No 275
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.50 E-value=8.3e-14 Score=110.75 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=65.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.+.|+++|+.|+|||+|+..|........++.. .....+.. .+..+.+||+||+..- + ..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rl--r-------~~~~~~- 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRL--R-------SKLLDE- 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEEECCGSSTCGTCECEEEETT-HCC--C-------HHHHHH-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCceEEeecCCCCEEEEEECCCcHHH--H-------HHHHHh-
Confidence 368999999999999999999987321111111 11111111 3567999999997432 1 111111
Q ss_pred HhcccccceEEEEEeCCCCCCcch----HHHHHHHH-----hhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD----HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~----~~~~~~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+.....+..|+||+|++. ....- ..+.+.+. ...+|+++++||.|+..+.....+...++
T Consensus 70 ~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 112444899999999873 11111 22223222 24689999999999987544433333333
No 276
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.49 E-value=3.7e-13 Score=129.72 Aligned_cols=111 Identities=17% Similarity=0.272 Sum_probs=77.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC---------------CceeEe---eEEE----eCCcEEEEcCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---------------GLTQTI---NFFK----LGTKLCLVDLPGYG 149 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~---------------gtt~~~---~~~~----~~~~~~lvDtpG~~ 149 (269)
..+|+++|+.++|||||+.+|+...+. ...... |+|.+. .+.+ .+..+.|+||||+.
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGM-ISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCC-cchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 458999999999999999999864211 111111 122221 1111 25568999999984
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
+ +.......+..+|.+++|+|+..+...++..++..+...+.|.++++||+|+.
T Consensus 99 d-------------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 D-------------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred C-------------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 3 11222333344999999999999888888888888777788999999999986
No 277
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=7.2e-13 Score=99.34 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=98.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEe----eEEE-eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTI----NFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~----~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++.++|...+|||||+-+.++. .+.+.+..| .-+. .+.. ...++.+|||+|. +.+..+.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~dd---SFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq----------EryrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADD---SFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ----------ERYRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcc---ccccceeeeeeeeEEEeEeeecccEEEEEEEecccc----------hhhhHHH
Confidence 358999999999999999998886 233332211 1111 1111 1457899999996 2345566
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQ 240 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~ 240 (269)
-.|++. ++.++++.|..+..... -..+...+.. .+.|+|+|.||||+-+...+.. ....+.+.+ +.
T Consensus 88 TayyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L------Gf 158 (193)
T KOG0093|consen 88 TAYYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQL------GF 158 (193)
T ss_pred HHHhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHh------Ch
Confidence 666665 89999999987522111 1223333322 4789999999999976432211 112222222 46
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
..|++|||.+.|+.++++.+.+.+.
T Consensus 159 efFEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 159 EFFETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred HHhhhcccccccHHHHHHHHHHHHH
Confidence 7899999999999999998887654
No 278
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.48 E-value=3.8e-14 Score=117.33 Aligned_cols=150 Identities=21% Similarity=0.329 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc-----Ccc-----ccCCCCC------------ceeEee-EEE-------------
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVV-----RTSDKPG------------LTQTIN-FFK------------- 135 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~-----~~s~~~g------------tt~~~~-~~~------------- 135 (269)
.++|+|.|+||+|||||+++|.... +++ +.|+..| ...|.. |..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~ 108 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR 108 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence 4689999999999999999987532 111 1222222 011111 111
Q ss_pred -----------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhh
Q 024325 136 -----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS 202 (269)
Q Consensus 136 -----------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~ 202 (269)
.|+.++|+.|.|.+.+. -++.. -+|.+++|+-+..+...+ ..-+++
T Consensus 109 ~t~~~v~ll~aaG~D~IiiETVGvGQsE---------~~I~~-------~aD~~v~v~~Pg~GD~iQ~~KaGimE----- 167 (266)
T PF03308_consen 109 ATRDAVRLLDAAGFDVIIIETVGVGQSE---------VDIAD-------MADTVVLVLVPGLGDEIQAIKAGIME----- 167 (266)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESSSTHH---------HHHHT-------TSSEEEEEEESSTCCCCCTB-TTHHH-----
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCccH---------HHHHH-------hcCeEEEEecCCCccHHHHHhhhhhh-----
Confidence 15669999999987531 11111 289999998776543333 333433
Q ss_pred CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc----CCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 203 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+.-++|+||+|+... ......++..+... ..+.+|++.+||.+|.|+++|.+.|.+...+
T Consensus 168 -iaDi~vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 168 -IADIFVVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp -H-SEEEEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred -hccEEEEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356899999995433 33344444444432 2345799999999999999999999887654
No 279
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.48 E-value=4.2e-13 Score=110.36 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=42.1
Q ss_pred hhCCcEEEEEecCCCCCch--HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 201 RSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 201 ~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
....|.++++||+|+.+.. ......+.+++ .. ...|++++||++|.|+++++++|.+..
T Consensus 146 ~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~----~~-~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 146 MFKEADLIVINKADLAEAVGFDVEKMKADAKK----IN-PEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHhhCCEEEEEHHHccccchhhHHHHHHHHHH----hC-CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457889999999998642 22233333322 21 247899999999999999999998754
No 280
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.48 E-value=2.2e-12 Score=111.94 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
++.+.|+||||.+... ..... .+|.++++.++.. ..+.+.+.. .-..+|.++|+||+|+.
T Consensus 126 g~D~viidT~G~~~~e---------~~i~~-------~aD~i~vv~~~~~---~~el~~~~~-~l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---------VDIAN-------MADTFVVVTIPGT---GDDLQGIKA-GLMEIADIYVVNKADGE 185 (300)
T ss_pred CCCEEEEeCCCCchhh---------hHHHH-------hhceEEEEecCCc---cHHHHHHHH-HHhhhccEEEEEccccc
Confidence 5679999999986421 01111 2788887765431 122221111 11368899999999998
Q ss_pred CchHHHHHHHHHHHHHH----hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 217 FPIDVARRAMQIEESLK----ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 217 ~~~~~~~~~~~~~~~~~----~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
...........+...+. ....+..+++++||++|+|+++|+++|.+...
T Consensus 186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 65432221111111111 11123457999999999999999999988654
No 281
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.2e-12 Score=97.31 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=94.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++++++|+.|+|||.|+..+....--..++...|+.-....... ..++.+|||+|. +.+....+.|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ----------ErFRSVtRsY 78 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ----------ERFRSVTRSY 78 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH----------HHHHHHHHHH
Confidence 468999999999999999998876321223333222211122222 346899999995 5667777888
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
++. +...++|.|...... -..+-.|+.. .++-++++.||.||-...++.-... .++.+ ....-.
T Consensus 79 YRG---AAGAlLVYD~Tsrds--fnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEA--s~Faq---Enel~f 148 (214)
T KOG0086|consen 79 YRG---AAGALLVYDITSRDS--FNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA--SRFAQ---ENELMF 148 (214)
T ss_pred hcc---ccceEEEEeccchhh--HHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHH--Hhhhc---ccceee
Confidence 887 677888998764221 1234444433 2345788999999976544432111 11111 112456
Q ss_pred EEeeCCCCCCHHHHHHHHH
Q 024325 243 MMVSSKSGAGIRSLRTVLS 261 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~ 261 (269)
..+||++|+|+++.|-...
T Consensus 149 lETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCA 167 (214)
T ss_pred eeecccccccHHHHHHHHH
Confidence 8899999999999875443
No 282
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.47 E-value=2e-12 Score=108.58 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc-----Cccc-----cCCCCC------------ceeEeeEE-E-------------
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVR-----TSDKPG------------LTQTINFF-K------------- 135 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~-----~s~~~g------------tt~~~~~~-~------------- 135 (269)
..+|+|.|.||+|||||+..|.... +++. .|++.| .+.+...| .
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~ 130 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR 130 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence 3589999999999999999876431 1111 122222 11111111 1
Q ss_pred -----------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC
Q 024325 136 -----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT 204 (269)
Q Consensus 136 -----------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~ 204 (269)
.|+.+.+|.|.|.+.+. ..+... +|.+++|.-+..+.. .+.++ ..-..+
T Consensus 131 at~~~i~~ldAaG~DvIIVETVGvGQse---------v~I~~~-------aDt~~~v~~pg~GD~---~Q~iK-~GimEi 190 (323)
T COG1703 131 ATREAIKLLDAAGYDVIIVETVGVGQSE---------VDIANM-------ADTFLVVMIPGAGDD---LQGIK-AGIMEI 190 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcch---------hHHhhh-------cceEEEEecCCCCcH---HHHHH-hhhhhh
Confidence 14569999999987641 122222 888888886653322 22211 011234
Q ss_pred cEEEEEecCCCCCchHHHHHHHHHHHHH---HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 205 KYQVVLTKTDTVFPIDVARRAMQIEESL---KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 205 p~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
.-++|+||.|+..............+.. .....+.+|++.+||.+|+|+++|++.|.+..++.
T Consensus 191 aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 191 ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 5689999999655433333222222222 22345678999999999999999999999987654
No 283
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.45 E-value=2.1e-12 Score=113.76 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=109.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccc----------cCC----CCCce---eEeeEEEeCCcEEEEcCCCCCCcchh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------TSD----KPGLT---QTINFFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~----------~s~----~~gtt---~~~~~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
..+|+|+-+...|||||+..|+....... -|+ ..|.| ..+...+.+..++++||||+.+--.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG- 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG- 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc-
Confidence 45899999999999999999987632111 111 12222 1123344578899999999854211
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 234 (269)
+ ++..++ -+|.+++++|+.++..++...+++..-..+.+.|+|+||+|...+. -........+.+-.
T Consensus 84 -E--------VERvl~---MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Ar-p~~Vvd~vfDLf~~ 150 (603)
T COG1217 84 -E--------VERVLS---MVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDAR-PDEVVDEVFDLFVE 150 (603)
T ss_pred -h--------hhhhhh---hcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCC-HHHHHHHHHHHHHH
Confidence 1 111111 1899999999999999999888888878899999999999998642 22222333333322
Q ss_pred c----CCCCCCeEEeeCCCCC----------CHHHHHHHHHHhhh
Q 024325 235 N----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIAR 265 (269)
Q Consensus 235 ~----~~~~~~vi~vSa~~g~----------gi~~L~~~i~~~~~ 265 (269)
. .....|++..|++.|+ ++.-||+.|.+.+.
T Consensus 151 L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 151 LGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred hCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 2 2346899999999874 68889999888764
No 284
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.45 E-value=1.6e-12 Score=99.14 Aligned_cols=152 Identities=21% Similarity=0.211 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee----EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~----~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
+++.++|.+-+|||||+..++.. +.+..++ |.+..|.- .... ..++.+|||+|. +.+..+.+
T Consensus 9 frlivigdstvgkssll~~ft~g-kfaelsd-ptvgvdffarlie~~pg~riklqlwdtagq----------erfrsitk 76 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEG-KFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAGQ----------ERFRSITK 76 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcC-cccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccch----------HHHHHHHH
Confidence 57899999999999999999987 4444442 32222320 1111 346889999995 56678888
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-hC----CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQ----TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-~~----~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
.|++. +-.+++|.|..+...... ..++..... .. +-+.+|..|+|+.+..++.... .+..... .+.
T Consensus 77 syyrn---svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE--aEklAa~---hgM 148 (213)
T KOG0091|consen 77 SYYRN---SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE--AEKLAAS---HGM 148 (213)
T ss_pred HHhhc---ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH--HHHHHHh---cCc
Confidence 88776 778899999875332221 122222211 11 2257899999998654332221 1111111 146
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
..+.+||++|.|+++.++.|.+.+
T Consensus 149 ~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 149 AFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred eEEEecccCCCcHHHHHHHHHHHH
Confidence 789999999999999998887654
No 285
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.44 E-value=3.4e-13 Score=100.73 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=62.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCcc---ccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~---~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+|+++|.+|+|||||+++|++.. .. ......+.+........ ...+.+||++|...... .+..+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~-- 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE-FPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS------QHQFFL-- 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS---------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC------TSHHHH--
T ss_pred CEEEECcCCCCHHHHHHHHhcCC-CcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc------cccchh--
Confidence 58999999999999999999873 22 11222222222222111 23488999999732111 001111
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTD 214 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~D 214 (269)
..+|++++|+|.++..+... .+++.++.. .++|+++|.||.|
T Consensus 72 -----~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 -----KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -----HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -----hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 22999999999875322222 233334433 2589999999998
No 286
>PLN00023 GTP-binding protein; Provisional
Probab=99.44 E-value=1.7e-12 Score=111.78 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----------------CCcEEEEcCCCCCC
Q 024325 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----------------GTKLCLVDLPGYGF 150 (269)
Q Consensus 87 ~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----------------~~~~~lvDtpG~~~ 150 (269)
.+.....+|+++|..|+|||||++++++........+..|.+........ ...+.||||+|..
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE- 94 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE- 94 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh-
Confidence 34445579999999999999999999986311111222222222111111 1348899999962
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---------------CCcEEEEEecCC
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---------------QTKYQVVLTKTD 214 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---------------~~p~iiv~NK~D 214 (269)
.+..+...|+.. ++++++|+|.+....... ..+++.+... .+|+++|.||+|
T Consensus 95 ---------rfrsL~~~yyr~---AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 95 ---------RYKDCRSLFYSQ---INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred ---------hhhhhhHHhccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 223444445443 999999999875322222 2344444432 378999999999
Q ss_pred CCCc
Q 024325 215 TVFP 218 (269)
Q Consensus 215 l~~~ 218 (269)
+...
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 9653
No 287
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.6e-12 Score=96.77 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
.+|+++|-.++||||++..|.-. ..+..+|.+.-.+. ..+.+..+.+||..|. +.++..|... +..
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~---~~~~~ipTvGFnvetVtykN~kfNvwdvGGq------d~iRplWrhY----y~g 84 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLG---QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ------DKIRPLWRHY----YTG 84 (180)
T ss_pred ceEEEEecccCCceehhhHHhcC---CCcccccccceeEEEEEeeeeEEeeeeccCc------hhhhHHHHhh----ccC
Confidence 57999999999999999999876 22333333332332 2234677999999994 5566676543 333
Q ss_pred ccccceEEEEEeCCCCCC--cchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 172 RVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~--~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
...++||+|++..-. ....++...+.. ...++++..||-|+..+....++...+. +........-+.+.|
T Consensus 85 ---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le--Le~~r~~~W~vqp~~ 159 (180)
T KOG0071|consen 85 ---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE--LERIRDRNWYVQPSC 159 (180)
T ss_pred ---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc--cccccCCccEeeccc
Confidence 789999999875411 112234343332 3578999999999987655444333322 111223356688999
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q 024325 247 SKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~ 265 (269)
|.+|.|+.+-+.||...+.
T Consensus 160 a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 160 ALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cccchhHHHHHHHHHhhcc
Confidence 9999999999999987653
No 288
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.43 E-value=3.3e-13 Score=114.69 Aligned_cols=83 Identities=27% Similarity=0.351 Sum_probs=63.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---C-----------------CcEEEEcCCCCCCcchh
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~-----------------~~~~lvDtpG~~~~~~~ 154 (269)
|+++|.||+|||||+|+|++. . ..++++|+||.+.+.... + ..+.++||||+....+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~-~-~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA-G-AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC-C-CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 589999999999999999998 4 488999999988653221 1 14899999999765332
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~ 185 (269)
. ..+...|+.....+|++++|+|+.
T Consensus 79 ~------~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 G------EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred h------hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 234456666666799999999975
No 289
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.43 E-value=6.4e-12 Score=108.21 Aligned_cols=147 Identities=24% Similarity=0.342 Sum_probs=101.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccC---CCCC----ceeEeeEEE-----e--CCcEEEEcCCCCCCcc----h
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPG----LTQTINFFK-----L--GTKLCLVDLPGYGFAY----A 153 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s---~~~g----tt~~~~~~~-----~--~~~~~lvDtpG~~~~~----~ 153 (269)
.+.|+++|+.|.||||++|.|++.. +.... +..+ .|..+.... . ...++++||||+|+.. .
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 4789999999999999999999872 11110 1111 222222211 1 2358899999999863 3
Q ss_pred hHHHHHHHHHHHHHHHhcc-----------cccceEEEEEeC-CCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHH
Q 024325 154 KEEVKDAWEELVKEYVSTR-----------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~-----------~~~d~vl~vid~-~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~ 221 (269)
++.+.+...+....|+..- .-+|+++|.+.+ .+++.+.|.++++.+.. .+++|.|+.|+|.....++
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~El 180 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDDEL 180 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHHHH
Confidence 4445444444444554421 127889988875 46889999999888875 5889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeE
Q 024325 222 ARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~vi 243 (269)
....+.+.+.+..+ ..++|
T Consensus 181 ~~~K~~I~~~i~~~---nI~vf 199 (373)
T COG5019 181 AEFKERIREDLEQY---NIPVF 199 (373)
T ss_pred HHHHHHHHHHHHHh---CCcee
Confidence 88888888777654 35555
No 290
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.42 E-value=5e-13 Score=99.52 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=110.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
-+++.++|--|+||||++..|.++ ++..+.+..|.......+.....+++||..|... ++..|..+.+.
T Consensus 17 EirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~------IRpyWsNYyen---- 85 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRG------IRPYWSNYYEN---- 85 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCccc------cchhhhhhhhc----
Confidence 368999999999999999999998 5666666666655555555567899999999643 55666655443
Q ss_pred ccccceEEEEEeCCCC--CCcchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~--~~~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
.|.++||||+.+. +.+...++.+.+.. ..+|+.+..||-|++.....++....+. +.........+-.+|
T Consensus 86 ---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~kln--l~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 86 ---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLN--LAGLRDRSWHIQECS 160 (185)
T ss_pred ---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcc--hhhhhhceEEeeeCc
Confidence 9999999997642 11222344444443 4689999999999987655444332221 111112245678899
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q 024325 247 SKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~ 265 (269)
|.+++|+..-.+|+.....
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999999999876654
No 291
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.42 E-value=8e-13 Score=112.36 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=90.5
Q ss_pred CCCCCCCCcEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeE-EEeCCcEEEEcCCCCCCcchhHHHHH
Q 024325 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINF-FKLGTKLCLVDLPGYGFAYAKEEVKD 159 (269)
Q Consensus 85 ~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~-~~~~~~~~lvDtpG~~~~~~~~~~~~ 159 (269)
..+...+...|.++|.||||||||++.+++.. ..+.+....++..|... ...+..+..+-|.+.+.. ....+..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl-~a~mv~~ 175 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHL-DAQMIAD 175 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcC-cHHHHHH
Confidence 33445678899999999999999998877641 22223333334434321 122455666666544332 2333444
Q ss_pred HHHHHHHHHHhcccccceEEEEEeCCCCC-Ccch------------------HHHHHHHHhhCCcEEEEEecCCCCCc--
Q 024325 160 AWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRD------------------HELISLMERSQTKYQVVLTKTDTVFP-- 218 (269)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~------------------~~~~~~l~~~~~p~iiv~NK~Dl~~~-- 218 (269)
.+..+.. .+.-+++++..-.+ .+.. ...++.-.....+-++|+||+|+.+.
T Consensus 176 Al~~L~~--------~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~~ 247 (290)
T PRK10463 176 AAPRLPL--------DDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLN 247 (290)
T ss_pred HHHHHhh--------cCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCcccH
Confidence 4333322 11122233322100 1000 00111111123567999999999863
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 219 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
.++....+.++.. ....+++++||++|+|+++|.+||...
T Consensus 248 ~dle~~~~~lr~l-----np~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 248 FDVEKCIACAREV-----NPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHHHHHHHHHHhh-----CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 2344444433332 125789999999999999999999874
No 292
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.2e-12 Score=97.73 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=102.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (269)
.++.++|--|+||+|++-++--. ++...-+.+|..... ..+.+-++.+||..|..+ ++..|+.. ++
T Consensus 19 ~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~-v~yKNLk~~vwdLggqtS------irPyWRcY----y~-- 84 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVET-VPYKNLKFQVWDLGGQTS------IRPYWRCY----YA-- 84 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCccc-cccccccceeeEccCccc------ccHHHHHH----hc--
Confidence 47999999999999998776543 222222333322221 223577899999998643 44556543 33
Q ss_pred cccceEEEEEeCCCC--CCcchHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 173 VSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 173 ~~~d~vl~vid~~~~--~~~~~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
+.|.++||+|+++. +.....++...+.+. +..+++++||.|........+....+. +.........+|..||
T Consensus 85 -dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~--l~~Lk~r~~~Iv~tSA 161 (182)
T KOG0072|consen 85 -DTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLG--LQKLKDRIWQIVKTSA 161 (182)
T ss_pred -ccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhC--hHHHhhheeEEEeecc
Confidence 38999999999853 233334555555432 356789999999876543333332222 2222233477999999
Q ss_pred CCCCCHHHHHHHHHHhhhhh
Q 024325 248 KSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~~~ 267 (269)
.+|+|+|..++|+.+.++..
T Consensus 162 ~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 162 VKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccccCCcHHHHHHHHHHhcc
Confidence 99999999999999987653
No 293
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.40 E-value=1.5e-11 Score=113.79 Aligned_cols=125 Identities=20% Similarity=0.207 Sum_probs=79.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCC-CCceeEeeEE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-~gtt~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
..+|+++|.+|+||||++|+|++. ....++.. ++||+..... ..+..+.+|||||+.++.............+..+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGe-kvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGE-VKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcc-ccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 468999999999999999999998 44555554 5666543332 2467899999999987633221111111222223
Q ss_pred HhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh-----CCcEEEEEecCCCCCc
Q 024325 169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 218 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~-----~~p~iiv~NK~Dl~~~ 218 (269)
+.. ..+|++++|..... .....+...++.+... -..+|+|+|..|..++
T Consensus 197 Lsk-~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKK-NPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred Hhc-CCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 332 23788888876542 1122344566666442 2468999999999974
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.39 E-value=1.2e-11 Score=103.53 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=59.6
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcchH-----HHHHHHHhhCCcEEEEEe
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDH-----ELISLMERSQTKYQVVLT 211 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vl~vid~~~~~~~~~~-----~~~~~l~~~~~p~iiv~N 211 (269)
.+.++||||+.+-+ .+..........+. ..-++++++|+.....+... ..+....+.+.|.+.|+|
T Consensus 92 ~y~l~DtPGQiElf-------~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELF-------THSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHH-------HHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEEE-------EechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 58999999974421 11222233333333 23468889998743332221 111223346899999999
Q ss_pred cCCCCCchHHHHHH-----------------HHHHHHHHh-cCCC--CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 212 KTDTVFPIDVARRA-----------------MQIEESLKA-NNSL--VQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 212 K~Dl~~~~~~~~~~-----------------~~~~~~~~~-~~~~--~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
|+|+.++. ..... ..+.+.+.. .... ..+++++|+++++|+++|+..|-+.++
T Consensus 165 K~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 165 KIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp -GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred ccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 99999832 11111 111111111 1111 236899999999999999999988765
No 295
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.39 E-value=7.4e-13 Score=105.46 Aligned_cols=57 Identities=33% Similarity=0.545 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~ 148 (269)
...+++++|.||+|||||+|+|++. ..+.+++.||+|++......+..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 3468999999999999999999998 56789999999999988887888999999995
No 296
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.39 E-value=8e-13 Score=103.91 Aligned_cols=56 Identities=34% Similarity=0.596 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~ 148 (269)
..+|+++|.||+|||||+|+|.+. ....++++||+|++..+...+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 457899999999999999999998 56789999999999988877777999999995
No 297
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.8e-11 Score=110.54 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=104.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc-----------------------------cccCCCCCceeEeeE---EEeCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINF---FKLGT 138 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-----------------------------~~~s~~~gtt~~~~~---~~~~~ 138 (269)
....++++|..++|||||+-+|+...+. .......|+|.++.. .+...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4568999999999999999887632100 001123456666532 22345
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcchHHHHHHHHhhCC-cEEEEE
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQT-KYQVVL 210 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-------~~~~~~~~~~l~~~~~-p~iiv~ 210 (269)
.++++|+||+ ..++...+.+...+|+.++|+|++.+. ..+..++...+...++ .+|+++
T Consensus 256 ~~tliDaPGh-------------kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivai 322 (603)
T KOG0458|consen 256 IVTLIDAPGH-------------KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAI 322 (603)
T ss_pred eEEEecCCCc-------------cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEe
Confidence 6999999996 345666777777899999999998532 2234566677777775 589999
Q ss_pred ecCCCCCc--hHHHHHHHHHHHHHHhcCC---CCCCeEEeeCCCCCCHHHH
Q 024325 211 TKTDTVFP--IDVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 211 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~---~~~~vi~vSa~~g~gi~~L 256 (269)
||+|+++- +...++...+..++....+ ....++|||+.+|+|+-..
T Consensus 323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 323 NKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99999974 3345555566666633222 2457999999999998653
No 298
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.5e-11 Score=103.79 Aligned_cols=142 Identities=20% Similarity=0.325 Sum_probs=97.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcccc------CCCCCceeEeeEEE-------eCCcEEEEcCCCCCCcch----h
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT------SDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYA----K 154 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~------s~~~gtt~~~~~~~-------~~~~~~lvDtpG~~~~~~----~ 154 (269)
.+.+.++|..|.|||||+|.|+.. ....- +..+..|..+.... ....++++||||+++... .
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~-~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLT-DLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhh-hccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 378999999999999999999987 22211 11111122221111 123588999999998643 3
Q ss_pred HHHHHHHHHHHHHHHhcc--------c--ccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325 155 EEVKDAWEELVKEYVSTR--------V--SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~--------~--~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~ 223 (269)
..+.+...+-.+.|+..- . -+++++|.+.+. +++.+.|.++++.+.. .+++|.|+.|+|...+.++..
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~ 178 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELNQ 178 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHHH
Confidence 344444444445555421 1 278899988764 5799999999888875 689999999999999999888
Q ss_pred HHHHHHHHHHhc
Q 024325 224 RAMQIEESLKAN 235 (269)
Q Consensus 224 ~~~~~~~~~~~~ 235 (269)
....+.+.+...
T Consensus 179 ~K~~I~~~i~~~ 190 (366)
T KOG2655|consen 179 FKKRIRQDIEEH 190 (366)
T ss_pred HHHHHHHHHHHc
Confidence 887777766654
No 299
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.34 E-value=3.3e-12 Score=122.91 Aligned_cols=113 Identities=16% Similarity=0.206 Sum_probs=78.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCc--------cccCC------CCCceeEee-------EEEeCCcEEEEcCCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTIN-------FFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~--------~~~s~------~~gtt~~~~-------~~~~~~~~~lvDtpG~~~ 150 (269)
..+|+++|+.++|||||+++|+..... ....+ ..|+|.+.. +...+..+.+|||||+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 468999999999999999998743110 00001 123343321 112356799999999853
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~ 217 (269)
-. ......+..+|++++|+|+..++..++..++..+...+.|.++|+||+|...
T Consensus 99 f~-------------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 FG-------------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred cH-------------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 11 1112223349999999999988888888888877777889999999999874
No 300
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.34 E-value=2.2e-12 Score=97.94 Aligned_cols=154 Identities=19% Similarity=0.138 Sum_probs=95.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcc-ccCC--CCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSD--KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~-~~s~--~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++++++|..=+|||||+-+.+....-. ..+. ..+.++.++.......+.+|||+|. +.+..+..-|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ----------ErfHALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ----------ERFHALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccch----------HhhhccCceE
Confidence 3689999999999999998877652000 0000 0113333444334456889999996 3455565666
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHH-HHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~vi 243 (269)
++. ++.+++|+|..+....+. ..+...+.. ..+.+++|.||+||-....+.... ..+.+ .-+..++
T Consensus 83 YRg---SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAe------svGA~y~ 153 (218)
T KOG0088|consen 83 YRG---SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAE------SVGALYM 153 (218)
T ss_pred EeC---CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHH------hhchhhe
Confidence 665 889999999864322221 223333333 346789999999985432222111 11111 1246689
Q ss_pred EeeCCCCCCHHHHHHHHHHhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.+||+.+.||.+||+.+...+
T Consensus 154 eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 154 ETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred ecccccccCHHHHHHHHHHHH
Confidence 999999999999999887654
No 301
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.33 E-value=1.6e-12 Score=115.40 Aligned_cols=135 Identities=18% Similarity=0.236 Sum_probs=87.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
..|+++|.+|+|||||+|+|++.. ....+++.||||++......+..+.++||||+.... .+......-.-.+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~---~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH---QMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh---HhhhhcCHHHHhh
Confidence 489999999999999999999852 235789999999999888776778999999997541 1111111000012
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
+.-......+.+.+|....+.......++.+......+.+.++|.+.......++..+.+.+
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~ 293 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNK 293 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHh
Confidence 22233467788888876544433333334444445567788888777765555444444443
No 302
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.32 E-value=5.7e-11 Score=96.57 Aligned_cols=141 Identities=22% Similarity=0.334 Sum_probs=91.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccC-------CCCCceeEeeEE------EeCCcEEEEcCCCCCCcchh----H
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFF------KLGTKLCLVDLPGYGFAYAK----E 155 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-------~~~gtt~~~~~~------~~~~~~~lvDtpG~~~~~~~----~ 155 (269)
++|++||.+|.|||||+|.|+..+ +...+ ++|-||.-.... ...-+++++||||+++.... +
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 789999999999999999998762 22211 233333322111 12346889999999986433 2
Q ss_pred HHHHHHHHHHHHHHhc---------cc--ccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325 156 EVKDAWEELVKEYVST---------RV--SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~---------~~--~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~ 223 (269)
.+.....+-...|++. .. -++.++|.+.+. +.+.+.|.++++.|.+ -++++-|+.|+|-+.-++...
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlTleEr~~ 204 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLTLEERSA 204 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccccHHHHHH
Confidence 2222222222222221 11 266788877654 5788888888888765 367899999999998777777
Q ss_pred HHHHHHHHHHhc
Q 024325 224 RAMQIEESLKAN 235 (269)
Q Consensus 224 ~~~~~~~~~~~~ 235 (269)
..+.+++.+...
T Consensus 205 FkqrI~~el~~~ 216 (336)
T KOG1547|consen 205 FKQRIRKELEKH 216 (336)
T ss_pred HHHHHHHHHHhc
Confidence 777777766654
No 303
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=6.7e-11 Score=88.20 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=93.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc------eeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL------TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt------t~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
.++..++|.-|+|||.|+..++.+. +..+.|.| |+-+.......++.+|||+|. +.+....
T Consensus 11 ifkyiiigdmgvgkscllhqftekk---fmadcphtigvefgtriievsgqkiklqiwdtagq----------erfravt 77 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK---FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFRAVT 77 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH---HhhcCCcccceecceeEEEecCcEEEEEEeecccH----------HHHHHHH
Confidence 4688999999999999999998873 34444432 333333333567899999995 4566777
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh---h---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER---S---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~---~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
+.|++. +...++|.|.....+-. .+-.|+.. . +.-++++.||.|+-...++.. +..+++..+ .+
T Consensus 78 rsyyrg---aagalmvyditrrstyn--hlsswl~dar~ltnpnt~i~lignkadle~qrdv~y--eeak~faee---ng 147 (215)
T KOG0097|consen 78 RSYYRG---AAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTY--EEAKEFAEE---NG 147 (215)
T ss_pred HHHhcc---ccceeEEEEehhhhhhh--hHHHHHhhhhccCCCceEEEEecchhhhhhcccCcH--HHHHHHHhh---cC
Confidence 777777 66778888876432222 23333332 2 234788999999865433221 112222222 24
Q ss_pred CCeEEeeCCCCCCHHHHHH
Q 024325 240 QPVMMVSSKSGAGIRSLRT 258 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~ 258 (269)
...+..||++|+|+++.+-
T Consensus 148 l~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 148 LMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eEEEEecccccCcHHHHHH
Confidence 6678999999999998763
No 304
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.30 E-value=3.1e-11 Score=98.47 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=52.6
Q ss_pred cceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc--hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252 (269)
Q Consensus 175 ~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g 252 (269)
++.++.|+|+..+..... . ...+....-++++||+|+.+. .+.....+.++. . ....+++++||++|+|
T Consensus 113 ~~~~i~vvD~~~~~~~~~-~---~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~----~-~~~~~i~~~Sa~~g~g 183 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-K---GGPGITRSDLLVINKIDLAPMVGADLGVMERDAKK----M-RGEKPFIFTNLKTKEG 183 (199)
T ss_pred hCcEEEEEEcchhhhhhh-h---hHhHhhhccEEEEEhhhccccccccHHHHHHHHHH----h-CCCCCEEEEECCCCCC
Confidence 567888999875433211 1 111222334899999999853 333333333332 2 2358899999999999
Q ss_pred HHHHHHHHHHhh
Q 024325 253 IRSLRTVLSKIA 264 (269)
Q Consensus 253 i~~L~~~i~~~~ 264 (269)
+++++++|.+.+
T Consensus 184 i~el~~~i~~~~ 195 (199)
T TIGR00101 184 LDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHHhhc
Confidence 999999998765
No 305
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.29 E-value=4.3e-12 Score=93.67 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=94.7
Q ss_pred EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE----E---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----K---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~----~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
++|.+++|||.|+-++-.. ++..+.--.|..+.+. . ...++.+|||+|. +.+.+....|+
T Consensus 2 llgds~~gktcllir~kdg---afl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------erfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDG---AFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------ERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccC---ceecCceeeeeeeccccceeccCCcEEEEEEeeccch----------HHHhhhhHhhh
Confidence 6899999999998665433 2222111122222221 1 1345889999996 44556566666
Q ss_pred hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCCeEE
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+. +|.++++.|..+..+... ..++..+.+ ..+.+.++.||||+.....+.. .-+.+.+ .+ ..|.+.
T Consensus 69 rd---a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~---~y---~ipfme 139 (192)
T KOG0083|consen 69 RD---ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAE---AY---GIPFME 139 (192)
T ss_pred cc---cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHH---HH---CCCcee
Confidence 55 999999999876544333 345555543 3567889999999965321111 0111222 12 589999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhhhc
Q 024325 245 VSSKSGAGIRSLRTVLSKIARFAK 268 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~~k 268 (269)
+||++|-|+|..+-.|.+.+...+
T Consensus 140 tsaktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 140 TSAKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred ccccccccHhHHHHHHHHHHHHhc
Confidence 999999999999998887765543
No 306
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.29 E-value=4.3e-12 Score=104.10 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=105.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
-+|.++|.|++|||||+.-|.+.. ..+..+.+||.-. ...+.+.++.+.|.||+.+...... .-.++.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk------grg~qvi 131 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK------GRGKQVI 131 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccCC------CCccEEE
Confidence 379999999999999999999974 6778888877665 2445688999999999976521110 0112334
Q ss_pred hcccccceEEEEEeCCCCCCcch--------------------------------------H------------------
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD--------------------------------------H------------------ 193 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~--------------------------------------~------------------ 193 (269)
.....|+++++|+|...++.... .
T Consensus 132 avartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~ 211 (358)
T KOG1487|consen 132 AVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIA 211 (358)
T ss_pred EEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchhee
Confidence 44455888888888754322110 0
Q ss_pred --------HHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 194 --------ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 194 --------~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
.++..++.. -+|++.++||+|.++-+++.-. ......+++||.+++|+|+|++.+.+.
T Consensus 212 Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii------------~~iphavpISA~~~wn~d~lL~~mwey 279 (358)
T KOG1487|consen 212 LRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDII------------YTIPHAVPISAHTGWNFDKLLEKMWEY 279 (358)
T ss_pred eecCcchhhhhhhhccCceeeeeeeeecccceeeeecccee------------eeccceeecccccccchHHHHHHHhhc
Confidence 111112222 3689999999999876554211 113557999999999999999999887
Q ss_pred hhh
Q 024325 264 ARF 266 (269)
Q Consensus 264 ~~~ 266 (269)
+.-
T Consensus 280 L~L 282 (358)
T KOG1487|consen 280 LKL 282 (358)
T ss_pred chh
Confidence 654
No 307
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.28 E-value=6e-12 Score=109.94 Aligned_cols=59 Identities=36% Similarity=0.568 Sum_probs=54.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~ 151 (269)
..+|+++|.||+|||||||+|.++ ..+.+++.||+|.+.++...+..+.++||||+..+
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~ 190 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPP 190 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCC
Confidence 357999999999999999999999 66899999999999999999889999999999765
No 308
>PTZ00099 rab6; Provisional
Probab=99.28 E-value=4.3e-11 Score=95.85 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEec
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTK 212 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK 212 (269)
...+.+|||||... +..+...|++ .+|++++|+|.+...+..+ ..++..+.. ...|+++|+||
T Consensus 28 ~v~l~iwDt~G~e~----------~~~~~~~~~~---~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQER----------FRSLIPSYIR---DSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHH----------hhhccHHHhC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 35688999999622 2333344443 4999999999875322222 233333322 25789999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 213 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 213 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+|+........ ......... ....++++||++|.|+++++++|.+.+..
T Consensus 95 ~DL~~~~~v~~--~e~~~~~~~---~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 95 TDLGDLRKVTY--EEGMQKAQE---YNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cccccccCCCH--HHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99964211110 011111111 13568999999999999999999987643
No 309
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=5.1e-12 Score=97.90 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC------CceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~------gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
++++++|..++||||+|.+.|.. .++.++. .+.++......+....+|||+|. +.+..+..
T Consensus 21 iK~vivGng~VGKssmiqryCkg---ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq----------eEfDaItk 87 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG---IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ----------EEFDAITK 87 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc---ccccccccccchhhhhHHHHhhHHHHHHHHHHhccc----------hhHHHHHH
Confidence 68999999999999999999964 2222221 11222222223556789999996 34566777
Q ss_pred HHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH-HHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER--SQTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~v 242 (269)
.|+++ +.+.++|+...+..... ..++.+.+.. ..+|.++|-||+|+++......-. +.+.+.+ ....
T Consensus 88 Ayyrg---aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l------~~Rl 158 (246)
T KOG4252|consen 88 AYYRG---AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL------HKRL 158 (246)
T ss_pred HHhcc---ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHh------hhhh
Confidence 88887 67777777655322111 1233333322 479999999999999764433211 1111111 2446
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.+|++..-|+-..|..|.+.+-
T Consensus 159 yRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 159 YRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHH
Confidence 88999999999999998877653
No 310
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.8e-11 Score=92.03 Aligned_cols=152 Identities=17% Similarity=0.138 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcC-ccccCC--CCCceeEeeEEEeC---------CcEEEEcCCCCCCcchhHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWG-VVRTSD--KPGLTQTINFFKLG---------TKLCLVDLPGYGFAYAKEEVKDA 160 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~--~~gtt~~~~~~~~~---------~~~~lvDtpG~~~~~~~~~~~~~ 160 (269)
++...+|.+|+||||++-..+...- ..+++. +-+....+.+...+ ..+.+|||+|. +.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ----------ER 79 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ----------ER 79 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH----------HH
Confidence 3566789999999999977765420 001110 00001111111111 24889999995 45
Q ss_pred HHHHHHHHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh----CCcEEEEEecCCCCCchHHHHH-HHHHHHHHHh
Q 024325 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFPIDVARR-AMQIEESLKA 234 (269)
Q Consensus 161 ~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~ 234 (269)
+.++...|++. +=..++++|....-... ...++..+..+ +..++++.||+|+.+...+.+. ...+.+.
T Consensus 80 FRSLTTAFfRD---AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k--- 153 (219)
T KOG0081|consen 80 FRSLTTAFFRD---AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK--- 153 (219)
T ss_pred HHHHHHHHHHh---hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH---
Confidence 66777777665 56678888865321111 12344444432 3448899999999765433322 2223222
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
.+.|+|.+||-+|.|+++..+.+.+.
T Consensus 154 ---yglPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 154 ---YGLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred ---hCCCeeeeccccCcCHHHHHHHHHHH
Confidence 26899999999999998877666554
No 311
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.8e-10 Score=96.25 Aligned_cols=145 Identities=20% Similarity=0.276 Sum_probs=104.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcC---------c-----cccCCCCCceeE---eeEEEeCCcEEEEcCCCCCCcchh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWG---------V-----VRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~---------~-----~~~s~~~gtt~~---~~~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
..+|+.+|+.+.|||||..+|+.... + ++-....|.|-+ +.+.+....+-.+|+||+
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH------ 85 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH------ 85 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh------
Confidence 45899999999999999998875320 0 111122344443 344555778999999997
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHH-HHHHHHHHH
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEESL 232 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~-~~~~~~~~~ 232 (269)
.++++.++....+.|..|+|+.+.++..++..+.+-...+.++| +++++||+|++++.++.+ ....+.+.+
T Consensus 86 -------aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLL 158 (394)
T COG0050 86 -------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred -------HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence 45566667777779999999999999899988877777778887 667899999998655544 345566666
Q ss_pred HhcC--CCCCCeEEeeCCC
Q 024325 233 KANN--SLVQPVMMVSSKS 249 (269)
Q Consensus 233 ~~~~--~~~~~vi~vSa~~ 249 (269)
..+. ....|++.-||..
T Consensus 159 s~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHcCCCCCCcceeechhhh
Confidence 6654 2357888777754
No 312
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.8e-11 Score=102.68 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=114.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCcccc-------------------------CCCCCceeEee------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------------------------SDKPGLTQTIN------------ 132 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-------------------------s~~~gtt~~~~------------ 132 (269)
..+++|.-+|+...||||++.++.|-+.+-+- -+.|++-+...
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 34678999999999999999999875211000 01111111110
Q ss_pred ----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcchHHHHHHHHhhC-CcE
Q 024325 133 ----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKY 206 (269)
Q Consensus 133 ----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~~~~~~~~~~~l~~~~-~p~ 206 (269)
.+..-..+.|+|+||. .-++..++....-.|.+++++.+.+. .+++..+.+..++-+. +.+
T Consensus 116 g~~~~~klvRHVSfVDCPGH-------------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCceEEEEEEEeccCCch-------------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 0011124789999996 34556666666667888888877653 4556666666555554 568
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 207 iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++-||+|++......+..+.+..++......+.|++|+||.-++|+|-+.++|...+
T Consensus 183 iilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 183 IILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred EEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 8999999999988887878888888877666678999999999999999999998765
No 313
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=8.4e-11 Score=101.05 Aligned_cols=136 Identities=20% Similarity=0.280 Sum_probs=89.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEEe-------------C------------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKL-------------G------------------ 137 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~~-------------~------------------ 137 (269)
...|.|.++|+.+.||||+|+.|+..+- -..+++.|.|.+-+..... +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 3568999999999999999999998731 1234444433222111110 0
Q ss_pred -----------CcEEEEcCCCCCCcchhHHHHH--HHHHHHHHHHhcccccceEEEEEeCCC-CCCcchHHHHHHHHhhC
Q 024325 138 -----------TKLCLVDLPGYGFAYAKEEVKD--AWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQ 203 (269)
Q Consensus 138 -----------~~~~lvDtpG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~~ 203 (269)
.++.+|||||+-+...+ .+.+ -+......|... +|.|++++|+.. .+.....+++..+..+.
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQ-risR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQ-RISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchh-cccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 12999999998654211 0111 122333444443 999999999863 34445568888898888
Q ss_pred CcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 204 TKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 204 ~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
-.+-+|+||+|.+++.++-++.-.+-
T Consensus 212 dkiRVVLNKADqVdtqqLmRVyGALm 237 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQLMRVYGALM 237 (532)
T ss_pred ceeEEEeccccccCHHHHHHHHHHHH
Confidence 88999999999999887766554443
No 314
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.3e-11 Score=105.60 Aligned_cols=125 Identities=19% Similarity=0.250 Sum_probs=88.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc-Ccc-------------ccCC------CCC---ceeEeeEEEeCCcEEEEcCCCCCC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW-GVV-------------RTSD------KPG---LTQTINFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~-~~~-------------~~s~------~~g---tt~~~~~~~~~~~~~lvDtpG~~~ 150 (269)
..+|+-+|.||||||-..|+--- .+. -.|+ ..| |+.-++|.+.+..++++||||+.+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 68999999999999998765210 010 0111 111 233345666788899999999843
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
+.+..++++-.+|.+++|||+..++.++...+++.+.-.++|++-.+||+|....+-+ +.+..+.+
T Consensus 94 -------------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~-ELLdEiE~ 159 (528)
T COG4108 94 -------------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPL-ELLDEIEE 159 (528)
T ss_pred -------------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChH-HHHHHHHH
Confidence 3334444444599999999999999999999999999999999999999998754332 33444444
Q ss_pred HH
Q 024325 231 SL 232 (269)
Q Consensus 231 ~~ 232 (269)
.+
T Consensus 160 ~L 161 (528)
T COG4108 160 EL 161 (528)
T ss_pred Hh
Confidence 44
No 315
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.4e-10 Score=99.83 Aligned_cols=234 Identities=23% Similarity=0.298 Sum_probs=139.0
Q ss_pred hhhhcCCCchhhHHHHHhcCCCcceeeeec-cccccccCCCCCCCCCCChhhhh-------hhhhhh------hchhhhH
Q 024325 12 QFRAIQPSPSILSFVEDNLLGRRRPIELRR-AGYNIELSAPLDNIPFSTSSERE-------RIEENI------FRNKLEF 77 (269)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~-------~i~~~~------~~~~~~~ 77 (269)
|.+-.+|.+++..++.... +||+.+-+. +-|+++++..+ -+....+++.+ ++.+.+ ++.+-..
T Consensus 66 k~klvnpt~~r~~hlitqM--KWRLrEG~GEAiYeIGVeD~G-~l~GL~deemnaSL~TL~~MA~~lGAs~~vLrek~v~ 142 (591)
T KOG1143|consen 66 KAKLVNPTTSRIQHLITQM--KWRLREGQGEAIYEIGVEDGG-ILSGLTDEEMNASLRTLRTMAQALGASMVVLREKDVT 142 (591)
T ss_pred eeeecCccHHHHHHHHHHH--HhhhhcCCCcEEEEeeeccCc-eeeccCHHHHHHHHHHHHHHHHHhCCceEEEEeeeee
Confidence 4566899999999999888 787755433 13555443321 12223333322 122211 0000000
Q ss_pred HHhhh-------ccCCCCCCC---CcEEEEEcCCCCChHHHHHHHhcCc-----CccccC-------CCCCceeEeeEEE
Q 024325 78 FAAAK-------VSSSFPAPD---LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-------DKPGLTQTINFFK 135 (269)
Q Consensus 78 ~~~~~-------~~~~~~~~~---~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s-------~~~gtt~~~~~~~ 135 (269)
..... --++.|.+. -.+|+++|...+|||||+--|+... ..+... -..|.|..+....
T Consensus 143 ~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~ev 222 (591)
T KOG1143|consen 143 VKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEV 222 (591)
T ss_pred ccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhc
Confidence 00000 012233322 2589999999999999998887541 001000 0112222211100
Q ss_pred ------------------------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 024325 136 ------------------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVK 189 (269)
Q Consensus 136 ------------------------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vl~vid~~~~~~ 189 (269)
...-++|+|.+|.... ....+..+ -..|..++|+.+..++.
T Consensus 223 lGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY-------------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~ 289 (591)
T KOG1143|consen 223 LGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKY-------------QKTTIHGLTGYTPHFACLVVSADRGIT 289 (591)
T ss_pred ccccccccccchhhcccHHHHHhhhcceEEEeecccchhh-------------heeeeeecccCCCceEEEEEEcCCCCc
Confidence 0123889999997321 11111111 12678899999998998
Q ss_pred cchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-----------------------CCCCCCeEEee
Q 024325 190 PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-----------------------NSLVQPVMMVS 246 (269)
Q Consensus 190 ~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~vi~vS 246 (269)
....+.+..+...++|++++++|+|+.++..+.+..+++...+... .....|+|.+|
T Consensus 290 ~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vS 369 (591)
T KOG1143|consen 290 WTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVS 369 (591)
T ss_pred cccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEe
Confidence 8889999999999999999999999999977777766666554421 11246899999
Q ss_pred CCCCCCHHHHHHHHH
Q 024325 247 SKSGAGIRSLRTVLS 261 (269)
Q Consensus 247 a~~g~gi~~L~~~i~ 261 (269)
+.+|+|++-|...+.
T Consensus 370 sVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 370 SVSGEGLRLLRTFLN 384 (591)
T ss_pred ecCccchhHHHHHHh
Confidence 999999998876653
No 316
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.24 E-value=2e-10 Score=95.27 Aligned_cols=161 Identities=13% Similarity=0.102 Sum_probs=87.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
+|+++|+.++||||+.+.++++... .-...-+.|.++.... ....+.+||.||........ +..-....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-----~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-----FNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-----HTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-----ccccHHHHH
Confidence 5899999999999999999987422 2223334555443322 24579999999986432210 000011222
Q ss_pred hcccccceEEEEEeCCCCCCcchH----HHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHH----HhcCCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDH----ELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESL----KANNSLV 239 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 239 (269)
..+.+++||+|+.......+. .++..+.+ .+..+.+.++|+|++.++......+.+.+.+ .......
T Consensus 75 ---~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~ 151 (232)
T PF04670_consen 75 ---SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED 151 (232)
T ss_dssp ---CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred ---hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 238999999999733222222 23333333 2567899999999998766555444444333 3221112
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
..++.+|.-. +.|-+.+..|...+
T Consensus 152 ~~~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 152 ITFFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHHTT
T ss_pred eEEEeccCcC-cHHHHHHHHHHHHH
Confidence 4567777776 46777776666543
No 317
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.24 E-value=9.8e-11 Score=101.11 Aligned_cols=160 Identities=21% Similarity=0.257 Sum_probs=109.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCc-C----c-------cccCCCCCceeEeeEEEe---------------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-G----V-------VRTSDKPGLTQTINFFKL--------------------- 136 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~-~----~-------~~~s~~~gtt~~~~~~~~--------------------- 136 (269)
.....|+.+|+.++|||||+-.|.-.. + . ..-.-..|.|.++.+.-.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 345689999999999999998876321 0 0 000001233434332211
Q ss_pred -----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEE
Q 024325 137 -----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209 (269)
Q Consensus 137 -----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv 209 (269)
+.-+.|+||.|+. .|- +..++.+ ...|..++++.+.++.+....+.+..+.....|+|+|
T Consensus 195 vv~~aDklVsfVDtvGHE----------pwL---rTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVv 261 (527)
T COG5258 195 VVKRADKLVSFVDTVGHE----------PWL---RTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVV 261 (527)
T ss_pred hhhhcccEEEEEecCCcc----------HHH---HHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEE
Confidence 1238899999972 221 1222222 2389999999999999999999999998899999999
Q ss_pred EecCCCCCchHHHHHHHHHHHHHHhcC----------------------CCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325 210 LTKTDTVFPIDVARRAMQIEESLKANN----------------------SLVQPVMMVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 210 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~vi~vSa~~g~gi~~L~~~i~~ 262 (269)
++|+|+.+++......+.+...++... ....|+|.+|+-+|+|++-|.+.+..
T Consensus 262 vTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 262 VTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred EEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 999999998777776666665554211 11468999999999999988776644
No 318
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.24 E-value=2.2e-11 Score=105.08 Aligned_cols=61 Identities=33% Similarity=0.573 Sum_probs=54.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~ 152 (269)
...+++++|.||+|||||+|+|++. ....+++.||+|++..+...+..+.++||||+..+.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 4578999999999999999999998 667899999999999988888889999999997653
No 319
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=9.8e-11 Score=110.82 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=91.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCC---------------CCceeE---eeEEEeC-CcEEEEcCCCCC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDK---------------PGLTQT---INFFKLG-TKLCLVDLPGYG 149 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~---------------~gtt~~---~~~~~~~-~~~~lvDtpG~~ 149 (269)
....+|+++|+..+|||||..+|+-... +...+.. .|.|-. +..++.+ ..+++|||||+.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 3456899999999999999988764311 1111111 112211 2334444 889999999985
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+ +..+..+.+..+|.+++|+|+..+..++...+++++...++|.++++||+|....+ .....+.+.
T Consensus 88 D-------------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~-~~~~~~~l~ 153 (697)
T COG0480 88 D-------------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD-FYLVVEQLK 153 (697)
T ss_pred c-------------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC-hhhhHHHHH
Confidence 4 22233333444999999999999999999999999999999999999999998753 444445555
Q ss_pred HHHH
Q 024325 230 ESLK 233 (269)
Q Consensus 230 ~~~~ 233 (269)
..+.
T Consensus 154 ~~l~ 157 (697)
T COG0480 154 ERLG 157 (697)
T ss_pred HHhC
Confidence 5443
No 320
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.22 E-value=2.7e-11 Score=95.02 Aligned_cols=57 Identities=35% Similarity=0.499 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~ 148 (269)
...+++++|.||+|||||+|+|++. ....+++.++||++......+..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 4578999999999999999999998 44668899999999988887888999999995
No 321
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.21 E-value=2e-10 Score=90.13 Aligned_cols=95 Identities=26% Similarity=0.336 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 161 ~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
|.++.+.+... +|++++|+|+..+....+..+...+...++|+++|+||+|+.+........ .+ .. ....
T Consensus 2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~-~~----~~--~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWK-SI----KE--SEGI 71 (156)
T ss_pred HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHH-HH----HH--hCCC
Confidence 44555544443 899999999987666666667666666689999999999997543322111 11 11 1246
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++++||++|.|+++|++.|.+.+.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 8999999999999999999988754
No 322
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.21 E-value=3.4e-11 Score=92.96 Aligned_cols=55 Identities=38% Similarity=0.536 Sum_probs=49.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 149 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~ 149 (269)
+++++|.+|+|||||+|+|++. ....++..+|+|++......+..+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCcC
Confidence 7999999999999999999998 555788999999998887777789999999984
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.20 E-value=2.7e-11 Score=98.21 Aligned_cols=56 Identities=36% Similarity=0.509 Sum_probs=48.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcC-------ccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~-------~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~ 148 (269)
..++++|.+|+|||||+|+|++... ...++..||||++...+..+..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 5799999999999999999998521 2467889999999988877667999999996
No 324
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.20 E-value=2.6e-10 Score=97.10 Aligned_cols=88 Identities=23% Similarity=0.241 Sum_probs=68.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 150 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~~ 150 (269)
+.+.++|||.||+|||||+|+|+.. . +.+.++|++|-|.+.... ...+.++|++|+-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~-~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKS-K-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcC-C-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4468999999999999999999998 4 459999999999754432 22489999999865
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~ 186 (269)
..+.. ..+.+.|++....+|.++.|+++..
T Consensus 97 GAs~G------~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAG------EGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccC------cCchHHHHHhhhhccceeEEEEecC
Confidence 43222 2455677777778999999998753
No 325
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.19 E-value=4e-11 Score=102.90 Aligned_cols=60 Identities=32% Similarity=0.536 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~ 151 (269)
...+++++|.||+|||||+|+|++. ....+++.||+|+...+...+..+.++||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence 3568999999999999999999998 56788999999999988888778999999999654
No 326
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.16 E-value=4.3e-11 Score=94.79 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=89.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC----cCccccCCCCCceeEee-EEE-eCCcEEEEcCC-CCCCcchhHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTIN-FFK-LGTKLCLVDLP-GYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~----~~~~~~s~~~gtt~~~~-~~~-~~~~~~lvDtp-G~~~~~~~~~~~~~~~~~ 164 (269)
...|.+.|++|||||+|+..++.. +.++-+.+.--|..|.. ... .+.++.-+-|- |+. ...+......+++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH--~da~m~~~ai~~l 90 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCH--LDASMNLEAIEEL 90 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccC--CcHHHHHHHHHHH
Confidence 358999999999999999887654 22222222222323322 122 45667777777 552 1223333344444
Q ss_pred HHHHHh----------------cccccc-eEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHH--HHHH
Q 024325 165 VKEYVS----------------TRVSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV--ARRA 225 (269)
Q Consensus 165 ~~~~~~----------------~~~~~d-~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~--~~~~ 225 (269)
...+.. .....| .-++|+|...+......-. ......-++|+||.|+.+..+. +...
T Consensus 91 ~~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K~g----P~i~~aDllVInK~DLa~~v~~dlevm~ 166 (202)
T COG0378 91 VLDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGG----PGIFKADLLVINKTDLAPYVGADLEVMA 166 (202)
T ss_pred hhcCCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcccCC----CceeEeeEEEEehHHhHHHhCccHHHHH
Confidence 333211 000012 4556666654422111000 0000125799999999875332 4444
Q ss_pred HHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 226 ~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
...++. ....|++++|+++|+|++++++||....
T Consensus 167 ~da~~~-----np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 167 RDAKEV-----NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHh-----CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 443332 2367999999999999999999997654
No 327
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.12 E-value=7.5e-11 Score=105.24 Aligned_cols=59 Identities=39% Similarity=0.620 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~ 151 (269)
...|++||+||+||||+||+|.|. ....||..||.|++++.......+.|.|+||+..+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCcccc
Confidence 578999999999999999999999 56789999999999999999999999999998765
No 328
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.6e-10 Score=102.20 Aligned_cols=143 Identities=16% Similarity=0.221 Sum_probs=86.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-----------------------------------------
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI----------------------------------------- 131 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~----------------------------------------- 131 (269)
.+|+|.|.+++||||++|+++.. ++. ++....||.-.
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~-klL-P~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHK-KLL-PSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHH-hhC-cccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 48999999999999999999976 322 22211111110
Q ss_pred ------eEEEe------CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHH
Q 024325 132 ------NFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 199 (269)
Q Consensus 132 ------~~~~~------~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l 199 (269)
.++.. ...+.++|.||+.-+...+ ........++|++++|+++...++....+++...
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~t----------swid~~cldaDVfVlV~NaEntlt~sek~Ff~~v 257 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELT----------SWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKV 257 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhh----------HHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHh
Confidence 01111 1248999999996542111 1122233349999999999887777788888777
Q ss_pred HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC-----CCCCCeEEeeCCC
Q 024325 200 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-----SLVQPVMMVSSKS 249 (269)
Q Consensus 200 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~vSa~~ 249 (269)
...+..+.|+.||+|....+. +-.+.+.....+.. ....-+++|||+.
T Consensus 258 s~~KpniFIlnnkwDasase~--ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 258 SEEKPNIFILNNKWDASASEP--ECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred hccCCcEEEEechhhhhcccH--HHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 766555778888999985422 11122222222221 1234589999653
No 329
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.09 E-value=2.8e-10 Score=90.69 Aligned_cols=57 Identities=33% Similarity=0.584 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~ 148 (269)
..++++++|.+|+|||||+|+|++. ....+++.+++|.+......+..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 4468999999999999999999997 44578899999999987776678999999996
No 330
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.09 E-value=3e-10 Score=102.78 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=94.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC----ceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g----tt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..+|+++|..|+||||||-+|+... .+.++|. ++-...++.......++||..-... .. .+
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~ee---f~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~--~~-------~l--- 73 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEE---FVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDD--RL-------CL--- 73 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhh---ccccccccCCccccCCccCcCcCceEEEecccccch--hH-------HH---
Confidence 4689999999999999999999873 3444433 2222344444556899999743211 01 11
Q ss_pred HHhcccccceEEEEEeCCCCCC--cchHHHHHHHHh-----hCCcEEEEEecCCCCCchHH--HHHHHHHHHHHHhcCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSL 238 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~--~~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 238 (269)
......+|+++++....+..+ .....|+-.+.+ .++|+|+|.||+|....... +....-+...+.+
T Consensus 74 -~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E---- 148 (625)
T KOG1707|consen 74 -RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE---- 148 (625)
T ss_pred -HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH----
Confidence 111223899999987664222 222345555544 46899999999999865332 1111111111211
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
...+|.+||++-.++.+++-.-...
T Consensus 149 iEtciecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 149 IETCIECSALTLANVSELFYYAQKA 173 (625)
T ss_pred HHHHHhhhhhhhhhhHhhhhhhhhe
Confidence 2457999999999999998765543
No 331
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.07 E-value=6.6e-10 Score=87.29 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=63.3
Q ss_pred ccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
+..+|++++|+|++.+....+..+.+.+... ++|+++|+||+|+.++.+.......+. .. ....++++||++
T Consensus 6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~--~~~~~~~iSa~~ 79 (157)
T cd01858 6 IDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILS----KE--YPTIAFHASINN 79 (157)
T ss_pred hhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHh----cC--CcEEEEEeeccc
Confidence 3449999999999887767777777777653 489999999999986544332222222 11 112268899999
Q ss_pred CCCHHHHHHHHHHhh
Q 024325 250 GAGIRSLRTVLSKIA 264 (269)
Q Consensus 250 g~gi~~L~~~i~~~~ 264 (269)
+.|+++|++.|.+.+
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999998764
No 332
>PRK13796 GTPase YqeH; Provisional
Probab=99.07 E-value=1.8e-10 Score=102.48 Aligned_cols=58 Identities=31% Similarity=0.412 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~ 150 (269)
..++++|.||+|||||||+|++.. ....+++.||||++...+..+....++||||+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 479999999999999999998542 2355899999999998887766679999999954
No 333
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.2e-09 Score=100.17 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=78.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCC------C---------CCceeEe----eEEE----eCCcEEEEcCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------K---------PGLTQTI----NFFK----LGTKLCLVDLPGY 148 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~------~---------~gtt~~~----~~~~----~~~~~~lvDtpG~ 148 (269)
..+|+++|+-.+|||+|+..|........-.+ + .|++-.. .+.. ..+-++++||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 46899999999999999999987631111000 0 1111111 0111 1234889999997
Q ss_pred CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
-. ++.+....+..+|++++|+|+..+..-...++++...+.+.|+.+|+||+|++
T Consensus 208 Vn-------------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 208 VN-------------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cc-------------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 32 23333344445999999999999999999999999999999999999999986
No 334
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.05 E-value=3.2e-09 Score=89.77 Aligned_cols=134 Identities=21% Similarity=0.231 Sum_probs=81.0
Q ss_pred CCchhhHHHHHhcCCCcceeeeeccccccccCC-------CCCCCCCCChhhhhhhhh----hhhchhhhHHHhhhccCC
Q 024325 18 PSPSILSFVEDNLLGRRRPIELRRAGYNIELSA-------PLDNIPFSTSSERERIEE----NIFRNKLEFFAAAKVSSS 86 (269)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~e~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~ 86 (269)
|..+++..+...+.-+.+++.++++++...... ......+..-.+...... .+.. .+..+.....+-.
T Consensus 59 PLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~-il~~~~~~l~r~i 137 (335)
T KOG2485|consen 59 PLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLK-ILTILSEELVRFI 137 (335)
T ss_pred CCccccHHHHHhcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHH-HHHHHHHHHHHhh
Confidence 667788888888888999999999775421000 001111111111111111 1111 1111111112222
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhcC----cCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcc
Q 024325 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAY 152 (269)
Q Consensus 87 ~~~~~~~~v~ivG~~~~GKSsLin~l~~~----~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~ 152 (269)
+.....+.|.++|-||+|||||+|++... ...+.+++.||.|+.+.. ....+.+.++||||+..+.
T Consensus 138 rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 138 RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 22345689999999999999999986542 256789999999999853 2347779999999997763
No 335
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.05 E-value=8e-09 Score=78.32 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=99.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHh-cCcCccccCCCCCceeEeeEEEe------CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~-~~~~~~~~s~~~gtt~~~~~~~~------~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
.-+|+++|.-++|||+++..|+ +.+ ..-.....|..|+-.... ...+.+.||+|+... ..++
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~--~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---------~~eL 77 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNH--VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---------QQEL 77 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccC--CCCCccccchhhheeEeeecCCChhheEEEeecccccCc---------hhhh
Confidence 3479999999999999998765 442 333444456666543332 235899999998543 1344
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchHHHHH-HHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~-~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
.+.|++. +|+.++|.++.+.-..+-.++++ ++.. ..+|+++..||+|+..+.+....... .+ .....
T Consensus 78 prhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~---~W--a~rEk 149 (198)
T KOG3883|consen 78 PRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQ---IW--AKREK 149 (198)
T ss_pred hHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHH---HH--Hhhhh
Confidence 5566555 89999999876432222222222 2322 24799999999999766443221111 11 11123
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
...+.|+|.....+-+.+..+...+
T Consensus 150 vkl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 150 VKLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred eeEEEEEeccchhhhhHHHHHHHhc
Confidence 5689999999999999999887654
No 336
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.05 E-value=6.2e-10 Score=89.18 Aligned_cols=151 Identities=14% Similarity=0.077 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-----eeEE-EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-----~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++++||..++|||+|+-..... .+...+.+|.-| +... .....+.+|||+|..+. +..+-+
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~---~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-------DrlRpl-- 72 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTN---AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-------DRLRPL-- 72 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccC---cCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc-------cccccc--
Confidence 58999999999999999887765 344444433332 2221 22345789999997542 110101
Q ss_pred HHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH-------------HHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRA-------------MQIE 229 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~-------------~~~~ 229 (269)
.-..+|+++++++...+.+.. ...++-.+..+ +.|+++|.+|.||.+.....+.. ..+.
T Consensus 73 ----sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA 148 (198)
T KOG0393|consen 73 ----SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA 148 (198)
T ss_pred ----CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH
Confidence 223478887777655432222 23444455544 58999999999999543211111 1111
Q ss_pred HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+.+ ....++++||++..|+.+.|+......
T Consensus 149 ~~i-----ga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 149 KEI-----GAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHh-----CcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 111 136789999999999999998876654
No 337
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.4e-09 Score=83.51 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCC-CCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
-+++++|--|||||||++.|-.. +...--+. -+|+..... .+.+++.+|..|... .+..|.+...
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE~l~I--g~m~ftt~DLGGH~q------Arr~wkdyf~----- 86 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEELSI--GGMTFTTFDLGGHLQ------ARRVWKDYFP----- 86 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChHHhee--cCceEEEEccccHHH------HHHHHHHHHh-----
Confidence 37999999999999999999886 43322221 223333333 266789999999622 2334444333
Q ss_pred ccccceEEEEEeCCCC--CCcchHH---HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC---------
Q 024325 172 RVSLKRVCLLIDTKWG--VKPRDHE---LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS--------- 237 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~--~~~~~~~---~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--------- 237 (269)
.+|.+++++|+.+. +.+...+ ++..-.-...|+++..||+|...+....+ .............
T Consensus 87 --~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~-l~~~l~l~~~t~~~~~v~~~~~ 163 (193)
T KOG0077|consen 87 --QVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDE-LRFHLGLSNFTTGKGKVNLTDS 163 (193)
T ss_pred --hhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHH-HHHHHHHHHHhcccccccccCC
Confidence 39999999998742 2221111 11111225799999999999987653222 2221111221111
Q ss_pred --CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 238 --LVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 238 --~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
....++.+|...+.|..+-+.|+...
T Consensus 164 ~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCeEEEEEEEEEccCccceeeeehhhh
Confidence 12346888988888877777776654
No 338
>PRK12289 GTPase RsgA; Reviewed
Probab=99.04 E-value=5.2e-10 Score=98.61 Aligned_cols=57 Identities=33% Similarity=0.482 Sum_probs=48.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-------ceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-------tt~~~~~~~~~~~~~lvDtpG~~~~ 151 (269)
.++|+|.+|+|||||||+|++. ....++.+++ ||++...+.......++||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence 5899999999999999999987 4567788888 8999988776444589999999765
No 339
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.03 E-value=8.1e-10 Score=86.61 Aligned_cols=56 Identities=38% Similarity=0.574 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~ 148 (269)
..+++++|.+|+|||||+|+|.+. ....+++.+|+|.+..+...+..+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 457899999999999999999987 45677889999988887777778999999995
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=99.02 E-value=6.6e-10 Score=97.90 Aligned_cols=71 Identities=28% Similarity=0.357 Sum_probs=51.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-------ceeEeeEEEeCCcEEEEcCCCCCCcc----hhHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFAY----AKEEVKDAWE 162 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-------tt~~~~~~~~~~~~~lvDtpG~~~~~----~~~~~~~~~~ 162 (269)
.++|+|.+|+|||||||+|++. ....++.+++ ||+...++..+....++||||+.+-. ..+++...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~-~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ 285 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE-AEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFV 285 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc-cceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhH
Confidence 4899999999999999999987 4456666654 78888777765456799999997642 2344555555
Q ss_pred HHH
Q 024325 163 ELV 165 (269)
Q Consensus 163 ~~~ 165 (269)
++.
T Consensus 286 ei~ 288 (347)
T PRK12288 286 EFR 288 (347)
T ss_pred HHH
Confidence 543
No 341
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.98 E-value=3.9e-09 Score=82.74 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=59.3
Q ss_pred ceEEEEEeCCCCCCcchHHHH-HHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHH
Q 024325 176 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 254 (269)
Q Consensus 176 d~vl~vid~~~~~~~~~~~~~-~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~ 254 (269)
|++++|+|+..+....+..+. ..+...++|+++|+||+|+.+..+.......+ ... ...+++++||++|.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~----~~~--~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYL----RHS--YPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHH----Hhh--CCceEEEEeccCCcChh
Confidence 689999999876666655555 45566789999999999997654332222222 111 14678999999999999
Q ss_pred HHHHHHHHh
Q 024325 255 SLRTVLSKI 263 (269)
Q Consensus 255 ~L~~~i~~~ 263 (269)
+|.+.|...
T Consensus 75 ~L~~~i~~~ 83 (155)
T cd01849 75 KKESAFTKQ 83 (155)
T ss_pred hHHHHHHHH
Confidence 999988654
No 342
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.5e-09 Score=97.66 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=81.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee------------------EEEeCCcEEEEcCCCCCCc
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN------------------FFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~------------------~~~~~~~~~lvDtpG~~~~ 151 (269)
.+..+++++-+...|||||..+|+... ..+-+...|.-|-+. ....+..+++||+||+.+-
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asn-gvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASN-GVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhc-cEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 445689999999999999999998763 233333444332211 1223667999999998542
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCC
Q 024325 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl 215 (269)
.....+....+|..++++|+-.|...+...++.+.-..+..+++|+||+|.
T Consensus 86 -------------~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 -------------SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred -------------hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 122222233489999999999999999999998777778899999999994
No 343
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.96 E-value=7.6e-09 Score=83.84 Aligned_cols=91 Identities=16% Similarity=0.046 Sum_probs=58.6
Q ss_pred ccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH--HHHHhcCCCCCCeEEeeCCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE--ESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~vi~vSa~~ 249 (269)
...+|++++|+|+..........+ .....++|+++|+||+|+.+..........+. ...........+++++||++
T Consensus 32 ~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 109 (190)
T cd01855 32 SPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKK 109 (190)
T ss_pred ccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCC
Confidence 344999999999986544443343 12234689999999999985433222222221 01111111124689999999
Q ss_pred CCCHHHHHHHHHHhh
Q 024325 250 GAGIRSLRTVLSKIA 264 (269)
Q Consensus 250 g~gi~~L~~~i~~~~ 264 (269)
|+|+++|+++|.+.+
T Consensus 110 ~~gi~eL~~~l~~~l 124 (190)
T cd01855 110 GWGVEELINAIKKLA 124 (190)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 344
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.95 E-value=1.6e-09 Score=91.20 Aligned_cols=70 Identities=29% Similarity=0.424 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-------CceeEeeEEEeCCcEEEEcCCCCCCc----chhHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAW 161 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-------gtt~~~~~~~~~~~~~lvDtpG~~~~----~~~~~~~~~~ 161 (269)
..++++|.+|+|||||+|+|.+.. ...+++.+ .||++...+..+ ...++||||+... ...+++...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f 198 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGF 198 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhC
Confidence 378999999999999999999873 33444333 388888766653 3589999999763 2234454444
Q ss_pred HHH
Q 024325 162 EEL 164 (269)
Q Consensus 162 ~~~ 164 (269)
.++
T Consensus 199 ~e~ 201 (245)
T TIGR00157 199 VEF 201 (245)
T ss_pred HHH
Confidence 444
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.95 E-value=1.4e-09 Score=95.68 Aligned_cols=86 Identities=21% Similarity=0.142 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCCCcc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAY 152 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~~~~ 152 (269)
..++++|.||+|||||+|+|++. ....++++|+||.+.+.... ...+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~-~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNL-LGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCC-CccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 47999999999999999999998 43378899999887643211 1258999999996542
Q ss_pred hhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~ 185 (269)
+.. ..+...++.....+|++++|+++.
T Consensus 82 s~g------~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKG------EGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcc------cCcchHHHHHHHhCCEEEEEEeCC
Confidence 211 123445666666799999999985
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.95 E-value=6.2e-10 Score=86.89 Aligned_cols=58 Identities=33% Similarity=0.422 Sum_probs=39.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCcccc---CCC----CCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDK----PGLTQTINFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~---s~~----~gtt~~~~~~~~~~~~~lvDtpG~~~~ 151 (269)
..++++|++|||||||+|+|++.. ...+ +.. ..||+....+..+....++||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~-~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA-KQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc-chhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence 479999999999999999999973 2222 222 226677777777677899999998654
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.95 E-value=9.1e-09 Score=81.97 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=62.9
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
++......++|++++|+|++.+....+..++..+ .++|+++|+||+|+.++.......+ .+.. ...+++.+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~----~~~~---~~~~vi~i 81 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKKTKKWLK----YFES---KGEKVLFV 81 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHHHHHHHH----HHHh---cCCeEEEE
Confidence 3334445569999999999876665555555544 2579999999999975533222111 1111 13568999
Q ss_pred eCCCCCCHHHHHHHHHHhh
Q 024325 246 SSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~ 264 (269)
||+++.|+++|.+.|...+
T Consensus 82 Sa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 9999999999999998764
No 348
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3e-08 Score=84.76 Aligned_cols=144 Identities=20% Similarity=0.265 Sum_probs=104.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc---C-----------ccccCCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW---G-----------VVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~---~-----------~~~~s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~ 154 (269)
-.+|.-+|+...|||||-.+++... . .++-....|.|-+. .+.+....+--+|+||+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH------ 127 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH------ 127 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch------
Confidence 3579999999999999998877421 0 01112233455443 34444667888999997
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCch-HHHHHHHHHHHHH
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPI-DVARRAMQIEESL 232 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~-~~~~~~~~~~~~~ 232 (269)
.++++..+......|..++|+.+.++..++..+.+-+.++.+++ +++.+||.|++++. .++-...++++.+
T Consensus 128 -------ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElL 200 (449)
T KOG0460|consen 128 -------ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELL 200 (449)
T ss_pred -------HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHH
Confidence 56677888888889999999999999999998888778887875 67789999999544 4444556677777
Q ss_pred Hhc--CCCCCCeEEeeCC
Q 024325 233 KAN--NSLVQPVMMVSSK 248 (269)
Q Consensus 233 ~~~--~~~~~~vi~vSa~ 248 (269)
..+ .....|++.=||+
T Consensus 201 se~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 201 SEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHcCCCCCCCCeeecchh
Confidence 665 3456788876664
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.87 E-value=2.8e-08 Score=85.26 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=65.5
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
.....+..+|++++|+|+..+....+..+.+.+. ++|+++|+||+|+.++.......+.+ .. ...+++++|
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~----~~---~~~~vi~iS 84 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYF----EE---KGIKALAIN 84 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHH----HH---cCCeEEEEE
Confidence 3344455599999999998777777766666553 68999999999997654333222222 11 135789999
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q 024325 247 SKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~ 265 (269)
|+++.|+++|.+.|.+.+.
T Consensus 85 a~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999887654
No 350
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=1.6e-08 Score=77.98 Aligned_cols=76 Identities=16% Similarity=0.079 Sum_probs=55.4
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
.....+|++++|+|+..+....+..+.+.+... ++|+++|+||+|+.++.......+ .+.. ...+++++||
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~----~~~~---~~~~ii~iSa 79 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAE----YFKK---EGIVVVFFSA 79 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHH----HHHh---cCCeEEEEEe
Confidence 334459999999999887777777888888765 799999999999976543322222 2222 1367899999
Q ss_pred CCCCC
Q 024325 248 KSGAG 252 (269)
Q Consensus 248 ~~g~g 252 (269)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98864
No 351
>PRK00098 GTPase RsgA; Reviewed
Probab=98.86 E-value=8.8e-09 Score=89.33 Aligned_cols=57 Identities=32% Similarity=0.503 Sum_probs=44.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-------ceeEeeEEEeCCcEEEEcCCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-------tt~~~~~~~~~~~~~lvDtpG~~~ 150 (269)
..++++|++|+|||||+|+|++.. ...++..++ ||+....+..+....++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 479999999999999999999873 344444443 777777766655579999999974
No 352
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.86 E-value=1.4e-08 Score=87.88 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=80.4
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch
Q 024325 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (269)
Q Consensus 140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~ 219 (269)
++|+|.+|..... ... -|-.+-.-.|...+++-+..++-....+.+.......+|+++|++|+|..++.
T Consensus 221 iTFIDLAGHEkYL---------KTT--vFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 221 ITFIDLAGHEKYL---------KTT--VFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred EEEEeccchhhhh---------hee--eeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHH
Confidence 7899999962210 000 11112223678888888887777777888888778899999999999999988
Q ss_pred HHHHHHHHHHHHHHhcC-----------------------CCCCCeEEeeCCCCCCHHHHHHHHH
Q 024325 220 DVARRAMQIEESLKANN-----------------------SLVQPVMMVSSKSGAGIRSLRTVLS 261 (269)
Q Consensus 220 ~~~~~~~~~~~~~~~~~-----------------------~~~~~vi~vSa~~g~gi~~L~~~i~ 261 (269)
-+.+.++.+.+.++... ...+|+|.||..+|+|++-|...+.
T Consensus 290 iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 290 ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 87777777766665411 0146899999999999998887764
No 353
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.84 E-value=2.2e-08 Score=83.31 Aligned_cols=90 Identities=19% Similarity=0.090 Sum_probs=58.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEEe------CCcEEEEcCCCCCCcchhH-HHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKE-EVKDAW 161 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~~------~~~~~lvDtpG~~~~~~~~-~~~~~~ 161 (269)
.+...|+++|++++|||||+|.|++.. ........+.||+.+-.+.. +..+.++||||+.+....+ ......
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 345689999999999999999999972 22333445678887654432 3679999999997753322 111111
Q ss_pred HHHHHHHHhcccccceEEEEEeCC
Q 024325 162 EELVKEYVSTRVSLKRVCLLIDTK 185 (269)
Q Consensus 162 ~~~~~~~~~~~~~~d~vl~vid~~ 185 (269)
..+ ..+ .++++++.++..
T Consensus 85 ~~l-----~~l-lss~~i~n~~~~ 102 (224)
T cd01851 85 FAL-----ATL-LSSVLIYNSWET 102 (224)
T ss_pred HHH-----HHH-HhCEEEEeccCc
Confidence 111 111 278888888764
No 354
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.82 E-value=2.6e-09 Score=92.86 Aligned_cols=60 Identities=33% Similarity=0.518 Sum_probs=55.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~ 151 (269)
..++|+|+|+||+||||+||+|... ....+++.||.|+.+.....+..+.|+|.||+...
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPP 310 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceeec
Confidence 4579999999999999999999998 67899999999999999999999999999998654
No 355
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.81 E-value=4.2e-08 Score=99.25 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=79.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhcCc-Cccc---cC--CCCCceeEeeEEEeCCcEEEEcCCCCCCcchh--HHHHHH
Q 024325 89 APDLPEIAFAGRSNVGKSSMLNALTRQW-GVVR---TS--DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK--EEVKDA 160 (269)
Q Consensus 89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~-~~~~---~s--~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~--~~~~~~ 160 (269)
....|+.+++|++|+||||+|+.. |-. .... .. ...+-|++|.++. ....+++||+|....... +.....
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf-~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF-TDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe-cCCEEEEcCCCccccCCCcccccHHH
Confidence 357799999999999999999875 221 1110 01 1134466777654 445789999996543211 122345
Q ss_pred HHHHHHHHHhcc--cccceEEEEEeCCCCCCcchH---H-------HHHHHHh---hCCcEEEEEecCCCCCc
Q 024325 161 WEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDH---E-------LISLMER---SQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 161 ~~~~~~~~~~~~--~~~d~vl~vid~~~~~~~~~~---~-------~~~~l~~---~~~p~iiv~NK~Dl~~~ 218 (269)
|..+.....+.. ..++.||+++|.+.-+..... . -++.+.. ...|+.+|+||||++..
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 777766554442 358999999998753332221 1 1122221 36899999999999854
No 356
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.81 E-value=5.2e-08 Score=87.92 Aligned_cols=125 Identities=22% Similarity=0.336 Sum_probs=75.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE---------------------------------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--------------------------------------- 130 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~--------------------------------------- 130 (269)
...|+|++||.-++||||.+..+... ++.+.+.-.-.|+.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA-RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA-RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh-ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 56799999999999999999988865 33222211111111
Q ss_pred --------------eeEE--Ee-C---CcEEEEcCCCCCCcchhHHHH---HHHHHHHHHHHhcccccceEEEEE-eCCC
Q 024325 131 --------------INFF--KL-G---TKLCLVDLPGYGFAYAKEEVK---DAWEELVKEYVSTRVSLKRVCLLI-DTKW 186 (269)
Q Consensus 131 --------------~~~~--~~-~---~~~~lvDtpG~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~vl~vi-d~~~ 186 (269)
.... +. | ..+++||.||+..+...+... +....+...|+. +.++++++| |.+-
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~---NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ---NPNAIILCIQDGSV 461 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhc---CCCeEEEEeccCCc
Confidence 1000 00 1 238999999997764433322 223344455444 488888887 4432
Q ss_pred CCC-cchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 187 GVK-PRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 187 ~~~-~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
... ..-.++...+..++...|+|++|+|+...
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 111 11234555555567889999999999753
No 357
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=8.4e-08 Score=86.90 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=87.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
.+.|+++|+||+||||||.+|.....-...+.+.|... ........++|+.+|.- +..| +.-
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT--vvsgK~RRiTflEcp~D------------l~~m----iDv 130 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT--VVSGKTRRITFLECPSD------------LHQM----IDV 130 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE--EeecceeEEEEEeChHH------------HHHH----HhH
Confidence 45677999999999999999987632122222222110 11112345778888741 0122 222
Q ss_pred ccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
..-+|+|+++||+..++.-...+++..+..++.| ++-|++..|+..... +......++..+-..--.+...|.+|...
T Consensus 131 aKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 131 AKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred HHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 3338999999999999998899999999999887 667999999986433 33333333322211111246678887644
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.79 E-value=6.9e-08 Score=83.32 Aligned_cols=89 Identities=11% Similarity=0.179 Sum_probs=64.2
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
....+..+|++++|+|+..+....+..+.+.+. ++|+++|+||+|+.+.......... +.. ...+++++||
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~----~~~---~~~~vi~vSa 88 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEY----FEE---QGIKALAINA 88 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHH----HHH---cCCeEEEEEC
Confidence 334455599999999998777777666655554 6899999999999754322222222 211 1357899999
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024325 248 KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~ 265 (269)
+++.|+++|.+.|...+.
T Consensus 89 ~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLK 106 (287)
T ss_pred CCcccHHHHHHHHHHHHH
Confidence 999999999999887654
No 359
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.77 E-value=4.8e-07 Score=81.47 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=66.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHh------cCcCccccCCCCCc----------e--eEeeEEE------------------
Q 024325 92 LPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGL----------T--QTINFFK------------------ 135 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~s~~~gt----------t--~~~~~~~------------------ 135 (269)
...|+++|.+|+||||++..|. |. .+..++..+.. . ..+.++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 3478999999999999998876 32 33333332110 0 0011110
Q ss_pred --eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecC
Q 024325 136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (269)
Q Consensus 136 --~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~ 213 (269)
.+..++++||||..... .....++. .+.. ....+.+++|+|+..+. ......+.+...-.+.-+|+||.
T Consensus 179 ~~~~~DvViIDTaGr~~~d-----~~lm~El~-~i~~-~~~p~e~lLVlda~~Gq--~a~~~a~~F~~~~~~~g~IlTKl 249 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQE-----DSLFEEML-QVAE-AIQPDNIIFVMDGSIGQ--AAEAQAKAFKDSVDVGSVIITKL 249 (429)
T ss_pred HhCCCCEEEEECCCCCcch-----HHHHHHHH-HHhh-hcCCcEEEEEeccccCh--hHHHHHHHHHhccCCcEEEEECc
Confidence 14579999999964421 11112222 2222 22368899999987442 22334444443334677899999
Q ss_pred CCCCc
Q 024325 214 DTVFP 218 (269)
Q Consensus 214 Dl~~~ 218 (269)
|-...
T Consensus 250 D~~ar 254 (429)
T TIGR01425 250 DGHAK 254 (429)
T ss_pred cCCCC
Confidence 98654
No 360
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.75 E-value=2e-08 Score=85.40 Aligned_cols=71 Identities=28% Similarity=0.447 Sum_probs=48.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCC---C----CCceeEeeEEEeCCcEEEEcCCCCCCc----chhHHHHHHHH
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD---K----PGLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAWE 162 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~---~----~gtt~~~~~~~~~~~~~lvDtpG~~~~----~~~~~~~~~~~ 162 (269)
..+++|.+|+|||||+|+|.+.. ...++. . .-||+....+..+..=.++||||+.+- ...+.+...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ 244 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFP 244 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhH
Confidence 68999999999999999999852 223322 2 237777777776545689999999753 23444444554
Q ss_pred HHH
Q 024325 163 ELV 165 (269)
Q Consensus 163 ~~~ 165 (269)
++.
T Consensus 245 ef~ 247 (301)
T COG1162 245 EFA 247 (301)
T ss_pred HHH
Confidence 443
No 361
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=3.5e-08 Score=82.17 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=87.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccc--cCCCCCc-----eeEeeEEEeCCcEEEEcCCCCCCcchhHH----HHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGL-----TQTINFFKLGTKLCLVDLPGYGFAYAKEE----VKDA 160 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~--~s~~~gt-----t~~~~~~~~~~~~~lvDtpG~~~~~~~~~----~~~~ 160 (269)
.++|..+|.+|.|||||++.|++..--.. ....|++ |-+........+++++||.|+++....+. +.+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 37899999999999999999998631111 1122332 22222333345689999999998643322 2222
Q ss_pred HHHHHHHHHh------------cccccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHH
Q 024325 161 WEELVKEYVS------------TRVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227 (269)
Q Consensus 161 ~~~~~~~~~~------------~~~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~ 227 (269)
...-.+.|+. .-.-+++++|.|.+. +++...|.-.++.+.. .+++|.|+.|+|.+...++......
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~k 200 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIK 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 2222222222 112367788877654 5666666666666653 6789999999999998888776655
Q ss_pred HHHHHH
Q 024325 228 IEESLK 233 (269)
Q Consensus 228 ~~~~~~ 233 (269)
+...+.
T Consensus 201 imsEL~ 206 (406)
T KOG3859|consen 201 IMSELV 206 (406)
T ss_pred HHHHHH
Confidence 544443
No 362
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.74 E-value=7.2e-08 Score=78.28 Aligned_cols=143 Identities=21% Similarity=0.219 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.+|.++|.+|+||||+=..++.. ..++....+|-|-|+...+. +.-+.+||..|. +.+++.|
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq-------------e~fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ-------------EEFMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCc-------------HHHHHHH
Confidence 47999999999999998888876 44666667788878754432 356789999996 3445555
Q ss_pred Hh-----cccccceEEEEEeCCCCCCcchHH----HHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-C
Q 024325 169 VS-----TRVSLKRVCLLIDTKWGVKPRDHE----LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-N 236 (269)
Q Consensus 169 ~~-----~~~~~d~vl~vid~~~~~~~~~~~----~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~ 236 (269)
+. ...+.+++++|+|++...-..|.. .++.+.++ ...+.+.+.|+|++..+..+...+.-...+... .
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~ 150 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSR 150 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcc
Confidence 55 234589999999997543333433 33334333 245788899999997654443333222222221 1
Q ss_pred CCCCCeEEeeCCC
Q 024325 237 SLVQPVMMVSSKS 249 (269)
Q Consensus 237 ~~~~~vi~vSa~~ 249 (269)
+....++++|--.
T Consensus 151 ~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 151 PLECKCFPTSIWD 163 (295)
T ss_pred cccccccccchhh
Confidence 2234456665543
No 363
>PRK12289 GTPase RsgA; Reviewed
Probab=98.73 E-value=7e-08 Score=85.21 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=58.3
Q ss_pred cccceEEEEEeCCCCC-Ccch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325 173 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 250 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~-~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g 250 (269)
.++|.+++|+|...+. .... ..++..+...++|+++|+||+|+.+..+..... +.+. ..+++++++||++|
T Consensus 88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~----~~~~---~~g~~v~~iSA~tg 160 (352)
T PRK12289 88 ANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQ----DRLQ---QWGYQPLFISVETG 160 (352)
T ss_pred hcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHH----HHHH---hcCCeEEEEEcCCC
Confidence 3499999999987432 2211 344444455689999999999998654432222 2222 23568999999999
Q ss_pred CCHHHHHHHHHHh
Q 024325 251 AGIRSLRTVLSKI 263 (269)
Q Consensus 251 ~gi~~L~~~i~~~ 263 (269)
.|+++|++.|...
T Consensus 161 ~GI~eL~~~L~~k 173 (352)
T PRK12289 161 IGLEALLEQLRNK 173 (352)
T ss_pred CCHHHHhhhhccc
Confidence 9999999988653
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.72 E-value=4.3e-08 Score=84.58 Aligned_cols=57 Identities=30% Similarity=0.402 Sum_probs=42.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCC-------CCCceeEeeEEEeCCcEEEEcCCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-------~~gtt~~~~~~~~~~~~~lvDtpG~~~ 150 (269)
..++++|++|+|||||+|+|++.. ...++. -..||++...+.......++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL-DLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh-hccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 479999999999999999999873 222222 234777777666654458999999954
No 365
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.68 E-value=8.8e-09 Score=89.49 Aligned_cols=61 Identities=31% Similarity=0.572 Sum_probs=54.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~ 151 (269)
...+.|+|+|+||+||||+||.|... .+..+.++||-|.--++.+.-..+.+||+||+..+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYP 365 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCC
Confidence 44578999999999999999999998 78999999999988777777778999999998665
No 366
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.68 E-value=1.6e-07 Score=79.21 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=57.5
Q ss_pred ccceEEEEEeCCCCC-Ccc-hHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCC
Q 024325 174 SLKRVCLLIDTKWGV-KPR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 251 (269)
Q Consensus 174 ~~d~vl~vid~~~~~-~~~-~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~ 251 (269)
++|.+++|+|...+. ... -..++..+...++|+++|+||+||.+...... +.. +.+. ..+.+++.+||++|+
T Consensus 36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~--~~~-~~~~---~~g~~v~~~SAktg~ 109 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEK--EQL-DIYR---NIGYQVLMTSSKNQD 109 (245)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHH--HHH-HHHH---HCCCeEEEEecCCch
Confidence 499999999987533 221 13444555557899999999999976443321 111 1222 235789999999999
Q ss_pred CHHHHHHHHHH
Q 024325 252 GIRSLRTVLSK 262 (269)
Q Consensus 252 gi~~L~~~i~~ 262 (269)
|+++|++.|..
T Consensus 110 gi~eLf~~l~~ 120 (245)
T TIGR00157 110 GLKELIEALQN 120 (245)
T ss_pred hHHHHHhhhcC
Confidence 99999998764
No 367
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.68 E-value=4.9e-07 Score=78.82 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=84.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcC---ccc-cCCC-----C--C----ceeE-------eeEE---------------
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWG---VVR-TSDK-----P--G----LTQT-------INFF--------------- 134 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~---~~~-~s~~-----~--g----tt~~-------~~~~--------------- 134 (269)
.|..++.|+-|||||||+|.|+.... ++. +... - . +..+ |...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 36889999999999999999886521 111 1110 0 0 0000 0001
Q ss_pred -EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch---HHHHHHHHhhCCcEEEEE
Q 024325 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMERSQTKYQVVL 210 (269)
Q Consensus 135 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~~~~p~iiv~ 210 (269)
...+...+|.|.|+.++.. +.. ..+....+......|.++-|||+.+.....+ ..+.+++ ...-++|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~p---v~~--t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD~ivl 152 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAP---VIQ--TFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFADVIVL 152 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHH---HHH--HhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---HhCcEEEE
Confidence 1235688999999987621 110 1111112222334788999999985433222 1222233 33458999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325 211 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257 (269)
Q Consensus 211 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~ 257 (269)
||+|++++.++......+++ . ....+++..|. .+.++.+++
T Consensus 153 NK~Dlv~~~~l~~l~~~l~~----l-np~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 153 NKTDLVDAEELEALEARLRK----L-NPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred ecccCCCHHHHHHHHHHHHH----h-CCCCeEEEccc-cCCCHHHhh
Confidence 99999998765444443333 2 22456777766 444454444
No 368
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.67 E-value=7.4e-08 Score=75.74 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=63.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcC---ccccCCCCC-------------c-eeEe-------------e--E-------
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPG-------------L-TQTI-------------N--F------- 133 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~---~~~~s~~~g-------------t-t~~~-------------~--~------- 133 (269)
|.++++|+.|+|||||++.+++... .+...+..| . .... . .
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 5789999999999999999876521 111111111 0 0000 0 0
Q ss_pred --EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhhCCcEEEE
Q 024325 134 --FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQVV 209 (269)
Q Consensus 134 --~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~~~p~iiv 209 (269)
....+...++||||..++.. +.+. .+..........++.+++++|+....... ...+..++.. .-++|
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~~---~~~~--~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~iv 152 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPGP---VAQT--FFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRIL 152 (158)
T ss_pred HhccCCCCEEEEECCCcCCHHH---HHHH--HhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEE
Confidence 01245689999999976421 1110 01122333444589999999986422111 1223333333 34789
Q ss_pred EecCCC
Q 024325 210 LTKTDT 215 (269)
Q Consensus 210 ~NK~Dl 215 (269)
+||+|+
T Consensus 153 lnk~dl 158 (158)
T cd03112 153 LNKTDL 158 (158)
T ss_pred EecccC
Confidence 999996
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.63 E-value=2e-06 Score=75.07 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCc------------eeEeeEE-------------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGL------------TQTINFF------------------- 134 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gt------------t~~~~~~------------------- 134 (269)
....++++|++|+||||++..|.+.. .+..+...+.. ...+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34689999999999999998776431 11111111100 0001111
Q ss_pred -EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh-cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEec
Q 024325 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (269)
Q Consensus 135 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK 212 (269)
..+..++++||||....... ..+....+....-. .....+.+++|+|+..+.... .+. ......-.+.-+|+||
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~--l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~-~~a-~~f~~~~~~~giIlTK 268 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTN--LMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNAL-SQA-KAFHEAVGLTGIILTK 268 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHH--HHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHH-HHH-HHHHhhCCCCEEEEEC
Confidence 12456999999997543211 11111222211100 012367789999997432111 122 2111112345789999
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325 213 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257 (269)
Q Consensus 213 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~ 257 (269)
.|....... ..... .. ...|+.+++ +|+++++|.
T Consensus 269 lD~t~~~G~--~l~~~----~~---~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 269 LDGTAKGGV--VFAIA----DE---LGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCccH--HHHHH----HH---HCCCEEEEe--CCCChhhCc
Confidence 996643221 11111 11 158999998 888898875
No 370
>PRK00098 GTPase RsgA; Reviewed
Probab=98.61 E-value=2.1e-07 Score=80.77 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=57.2
Q ss_pred cccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325 173 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 250 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g 250 (269)
.++|.+++|+|+..+..... ..++..+...++|+++|+||+|+.+..+. .....+.+.. .+.+++++||++|
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~---~g~~v~~vSA~~g 152 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEE---ARELLALYRA---IGYDVLELSAKEG 152 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHH---HHHHHHHHHH---CCCeEEEEeCCCC
Confidence 45999999999864322211 34555566678999999999999743221 1112222222 2468999999999
Q ss_pred CCHHHHHHHHHH
Q 024325 251 AGIRSLRTVLSK 262 (269)
Q Consensus 251 ~gi~~L~~~i~~ 262 (269)
+|+++|++.|..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999998754
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.60 E-value=5.4e-06 Score=70.89 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=56.4
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH-hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV-STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl 215 (269)
+..+.++||||..... ....+....+..... ......|.+++|+|+.. ...+........+.-.+.-+|+||+|.
T Consensus 154 ~~D~ViIDT~G~~~~d--~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~~~g~IlTKlDe 229 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNK--VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVGLTGIILTKLDG 229 (272)
T ss_pred CCCEEEEeCCCCCcch--HHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCCCCEEEEEccCC
Confidence 4679999999986531 111111122221111 01123788999999963 222222222222212346789999998
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325 216 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257 (269)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~ 257 (269)
....... .... .. ...|+.+++ +|+++++|.
T Consensus 230 ~~~~G~~--l~~~----~~---~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 230 TAKGGII--LSIA----YE---LKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCccHH--HHHH----HH---HCcCEEEEe--CCCChHhCc
Confidence 6543221 1111 11 147899998 888888775
No 372
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.60 E-value=6e-07 Score=79.92 Aligned_cols=88 Identities=18% Similarity=0.094 Sum_probs=58.3
Q ss_pred ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252 (269)
Q Consensus 174 ~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g 252 (269)
.++++++|+|+.+.......++.+.+. +.|+++|+||+|+.+... .....+.+.+...........++++||++|+|
T Consensus 63 ~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~g 140 (360)
T TIGR03597 63 SNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNG 140 (360)
T ss_pred CCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCC
Confidence 378999999986544444444444432 689999999999986432 22333333333333211113589999999999
Q ss_pred HHHHHHHHHHh
Q 024325 253 IRSLRTVLSKI 263 (269)
Q Consensus 253 i~~L~~~i~~~ 263 (269)
+++|++.|.+.
T Consensus 141 v~eL~~~l~~~ 151 (360)
T TIGR03597 141 IDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 373
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=7.1e-08 Score=75.82 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE-Ee-C-CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KL-G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~-~~-~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
+.+++++|..|.||+|++++.+...-.....+..|.......+ +. + .++..|||+|...- ..+...|
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~----------gglrdgy 79 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK----------GGLRDGY 79 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceee----------ccccccc
Confidence 5789999999999999998865541111122222333333222 22 3 67899999997321 1111111
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
+-. ....++++|....++-.. ..+...+.. .++|++++.||.|.-.+....+.. .-....+..++.+
T Consensus 80 yI~---~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v-------~~~rkknl~y~~i 149 (216)
T KOG0096|consen 80 YIQ---GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPV-------SFHRKKNLQYYEI 149 (216)
T ss_pred EEe---cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccc-------eeeecccceeEEe
Confidence 111 344566666654333222 122222221 258999999999986553111111 1111235678999
Q ss_pred eCCCCCCHHHHHHHHHHhh
Q 024325 246 SSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~ 264 (269)
||+.+.|++.-+.|+.+.+
T Consensus 150 Saksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 150 SAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ecccccccccchHHHhhhh
Confidence 9999999999999998765
No 374
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.56 E-value=3.2e-07 Score=79.18 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=58.1
Q ss_pred cccceEEEEEeCCCCC-Ccch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325 173 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 250 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~-~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g 250 (269)
.++|.+++|+|+..+. .... ..++..+...++|+++|+||+|+.++.+..... .... ..+.+++++||+++
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~----~~~~---~~g~~v~~vSA~~g 149 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELEL----VEAL---ALGYPVLAVSAKTG 149 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHH----HHHH---hCCCeEEEEECCCC
Confidence 3499999999997654 2222 345555666789999999999998653221111 1111 13578999999999
Q ss_pred CCHHHHHHHHHH
Q 024325 251 AGIRSLRTVLSK 262 (269)
Q Consensus 251 ~gi~~L~~~i~~ 262 (269)
.|+++|...|..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988764
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=98.53 E-value=1.7e-06 Score=75.96 Aligned_cols=146 Identities=21% Similarity=0.223 Sum_probs=78.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCC---ce-------e--EeeE--------------------E
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPG---LT-------Q--TINF--------------------F 134 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~g---tt-------~--~~~~--------------------~ 134 (269)
...|+++|.+|+||||++..|... ..+..+..... .. . .+.+ .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 458999999999999988776532 11222211110 00 0 0000 0
Q ss_pred EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCC
Q 024325 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (269)
Q Consensus 135 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~D 214 (269)
..+..++++||||...... ....++ ..+.... ..|.+++|+|+..+ ....+........-..--+|+||.|
T Consensus 220 ~~~~DvVLIDTaGr~~~~~-----~lm~eL-~~i~~~~-~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHTDA-----NLMDEL-KKIVRVT-KPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred hCCCCEEEEECCCccCCcH-----HHHHHH-HHHHHhh-CCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeec
Confidence 1245699999999864211 111222 1111111 36888999998643 2222222333222234568899999
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257 (269)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~ 257 (269)
........ ..... ....|+.+++ +|+++++|.
T Consensus 291 ~~~~~G~~--ls~~~-------~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 291 ADAKGGAA--LSIAY-------VIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred CCCCccHH--HHHHH-------HHCcCEEEEe--CCCChhhcc
Confidence 87543321 11111 1258999998 799998876
No 376
>PRK12288 GTPase RsgA; Reviewed
Probab=98.53 E-value=1e-06 Score=77.84 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=58.7
Q ss_pred cccceEEEEEeCCCCCCcch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCC
Q 024325 173 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 251 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~ 251 (269)
.++|.+++|.+..+.+.... ..++......++|.++|+||+|+.+..+...... ....+. ..+.+++++||++++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~-~~~~y~---~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNE-QLDIYR---NIGYRVLMVSSHTGE 194 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHH-HHHHHH---hCCCeEEEEeCCCCc
Confidence 35889888888764443322 2344455566899999999999987543222111 112222 235789999999999
Q ss_pred CHHHHHHHHHHh
Q 024325 252 GIRSLRTVLSKI 263 (269)
Q Consensus 252 gi~~L~~~i~~~ 263 (269)
|+++|+++|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998753
No 377
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=7e-07 Score=88.62 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=79.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCcc-----ccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcch--hHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA--KEEVKDAWE 162 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-----~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~--~~~~~~~~~ 162 (269)
.+.|..+++|++|+||||++...--..... ..-..+| |++|.++. +...+++||+|-..... .+.-...|.
T Consensus 123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf-~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWWF-TDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCccc-ccceEEEcCCcceecccCcchhhHHHHH
Confidence 678999999999999999985432211111 1122334 78887543 56689999999654432 223345566
Q ss_pred HH---HHHHHhcccccceEEEEEeCCCCCCcchHHH---H-------HHHH---hhCCcEEEEEecCCCCCc
Q 024325 163 EL---VKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL---I-------SLME---RSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 163 ~~---~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~---~-------~~l~---~~~~p~iiv~NK~Dl~~~ 218 (269)
.+ .+.+.... .++.|++.+|.++-.+....+. . +.+. +...|+++++||.|+++.
T Consensus 201 ~fL~lLkk~R~~~-piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 201 GFLGLLKKYRRRR-PLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHhccCC-CCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 54 34444433 4899999999875433333221 1 1222 136899999999999974
No 378
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.51 E-value=1.3e-07 Score=75.90 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhc----CcCccccCCCCC-c-------------eeEe----e---------------EEE
Q 024325 93 PEIAFAGRSNVGKSSMLNALTR----QWGVVRTSDKPG-L-------------TQTI----N---------------FFK 135 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~----~~~~~~~s~~~g-t-------------t~~~----~---------------~~~ 135 (269)
|.+.+.|..|||||||++.++. ..+++.+.+..| . .... . ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 6789999999999999999982 112333222222 0 0000 0 001
Q ss_pred e--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhhCCcEEEEEe
Q 024325 136 L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQVVLT 211 (269)
Q Consensus 136 ~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~~~p~iiv~N 211 (269)
. ++...++.+.|..++..- .+. ...+...-..+.++.|+|+..-.... ..-+..+ ...--++|+|
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l-----~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Q---i~~ADvIvln 149 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPL-----ILQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLREQ---IAFADVIVLN 149 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGH-----HHH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHH---HCT-SEEEEE
T ss_pred cCCCcCEEEECCccccccchh-----hhc---cccccccccccceeEEeccccccccccchhhhhhc---chhcCEEEEe
Confidence 1 357899999998765322 000 11112222378899999996421111 1122222 3444689999
Q ss_pred cCCCCCch
Q 024325 212 KTDTVFPI 219 (269)
Q Consensus 212 K~Dl~~~~ 219 (269)
|+|+.+..
T Consensus 150 K~D~~~~~ 157 (178)
T PF02492_consen 150 KIDLVSDE 157 (178)
T ss_dssp -GGGHHHH
T ss_pred ccccCChh
Confidence 99998765
No 379
>PRK01889 GTPase RsgA; Reviewed
Probab=98.49 E-value=1.1e-06 Score=78.16 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=60.7
Q ss_pred cccceEEEEEeCCCCCCcc-hHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCC
Q 024325 173 VSLKRVCLLIDTKWGVKPR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 251 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~ 251 (269)
.++|.+++|+++.+++... ...++..+...++|.++|+||+||.++.+ ...+.+... ..+++++++|+++|.
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~~~~~~~-----~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKIAEVEAL-----APGVPVLAVSALDGE 183 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHHHHHHHh-----CCCCcEEEEECCCCc
Confidence 4589999999987655542 34666777778899999999999986522 122222221 236899999999999
Q ss_pred CHHHHHHHHH
Q 024325 252 GIRSLRTVLS 261 (269)
Q Consensus 252 gi~~L~~~i~ 261 (269)
|+++|..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999999985
No 380
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.47 E-value=1.9e-06 Score=65.74 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=87.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccc---cCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~---~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
..+|.++|.+..|||||+-...+...-.. .-..-.+.+.+.....+..+.+||..|..+ +....
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~-------------~~n~l 86 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE-------------FINML 86 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHh-------------hhccC
Confidence 36899999999999999988777621000 001111111122222356688999999632 11111
Q ss_pred HhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhhC---CcEEEEEecCCCCC---chHHHHHHHHHHHHHHhcCCCCCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERSQ---TKYQVVLTKTDTVF---PIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~~---~p~iiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
--.-..+-+++|++|-....+-. -.++.++....+ +| |+|.+|-|+.- ++............. .....+
T Consensus 87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YA---k~mnAs 162 (205)
T KOG1673|consen 87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYA---KVMNAS 162 (205)
T ss_pred ceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHH---HHhCCc
Confidence 11223367789999976432221 123333333332 34 56799998752 322222221111111 223688
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.+++|+-...|+..++..+-..+
T Consensus 163 L~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 163 LFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred EEEeeccccccHHHHHHHHHHHH
Confidence 99999999999999998765443
No 381
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.43 E-value=1.9e-05 Score=67.58 Aligned_cols=60 Identities=17% Similarity=0.060 Sum_probs=42.0
Q ss_pred hCCcEEEEEecCCCCCch---------HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 202 SQTKYQVVLTKTDTVFPI---------DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.++|+++|++|||.+.-- ....+...++++.-. .+...|++|+|...|++-|..+|....
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr---~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR---YGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH---cCceeEEeecccccchHHHHHHHHHHh
Confidence 368899999999995421 122223333333322 257789999999999999999998754
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.40 E-value=3.9e-06 Score=74.84 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=56.6
Q ss_pred hcccccc-eEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 170 STRVSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 170 ~~~~~~d-~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
......+ +|++|+|+.+........+.+.. .+.|+++|+||+|+.+... ..+....+.............++.+||
T Consensus 64 ~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA 141 (365)
T PRK13796 64 NGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA 141 (365)
T ss_pred HhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence 3334455 89999998753322222222222 2689999999999986432 122222222222222111236899999
Q ss_pred CCCCCHHHHHHHHHHhh
Q 024325 248 KSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~ 264 (269)
++|.|+++|++.|.+..
T Consensus 142 k~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 142 QKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999997653
No 383
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.37 E-value=3e-06 Score=74.84 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=73.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCC-----------c------eeEeeE-----------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------L------TQTINF----------------- 133 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~g-----------t------t~~~~~----------------- 133 (269)
..|..++.|+-|||||||+|.++... +++.+.+..| . ...+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 35789999999999999999998531 1222211111 0 001100
Q ss_pred ------EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc----------------
Q 024325 134 ------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR---------------- 191 (269)
Q Consensus 134 ------~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~---------------- 191 (269)
....+...++.|.|+.++. .+...+ ....+...-..|.++.|+|+.......
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P~---~i~~~~---~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALPK---PLVQAF---QWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADD 156 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCHH---HHHHHh---cCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccc
Confidence 0113568899999987641 121111 001111222478899999997432100
Q ss_pred ----hHHHHHH-HHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 192 ----DHELISL-MERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 192 ----~~~~~~~-l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
...+... ..+....-++|+||+|+.++.++....+.++.
T Consensus 157 ~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 157 NLDHETPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAA 200 (341)
T ss_pred cccccchHHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHH
Confidence 0000111 12223446899999999988777666555544
No 384
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.34 E-value=1e-05 Score=70.69 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=66.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCC-c----------eeEeeE-------EE--------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-L----------TQTINF-------FK-------------- 135 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~g-t----------t~~~~~-------~~-------------- 135 (269)
..|..++.|.-|||||||+|.++... +++.+.+..| + ..++.. ..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 46899999999999999999998541 2222222222 0 001100 00
Q ss_pred ------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcEE
Q 024325 136 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQ 207 (269)
Q Consensus 136 ------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~i 207 (269)
..+...+|.|.|..++. .+.+.+ +....+...-..+.++.|+|+.......+ .....++ ...-+
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~---~i~~~~--~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi---~~AD~ 154 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPG---PIIQTF--FSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV---GYADR 154 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHH---HHHHHH--hcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH---HhCCE
Confidence 02567899999986531 111111 00111122223688999999975322211 1122223 33458
Q ss_pred EEEecCCCCCc
Q 024325 208 VVLTKTDTVFP 218 (269)
Q Consensus 208 iv~NK~Dl~~~ 218 (269)
+|+||+|+.++
T Consensus 155 IvlnK~Dl~~~ 165 (318)
T PRK11537 155 ILLTKTDVAGE 165 (318)
T ss_pred EEEeccccCCH
Confidence 99999999974
No 385
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.32 E-value=4.2e-05 Score=70.05 Aligned_cols=61 Identities=13% Similarity=-0.035 Sum_probs=42.7
Q ss_pred CCcEEEEEecCCCCCc---------hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 203 QTKYQVVLTKTDTVFP---------IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 203 ~~p~iiv~NK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++|++||++|+|.... ....-+++.++...-.+ +..+|++|++...+++.|+..|...+-.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~y---GAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKY---GASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhc---CCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 5799999999998642 11223334444433333 5678999999999999999998776543
No 386
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.30 E-value=1e-07 Score=74.78 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=90.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC---CceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---GLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~---gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
..++.++|+-++||||++.+.+... +...+. |.......... -.+..+||.+|.. .+..|
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~n---fs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe----------rfg~m 91 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQN---FSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE----------RFGNM 91 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHH---HHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh----------hhcce
Confidence 4579999999999999998876541 111111 11111111111 1246799999962 22233
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 236 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 236 (269)
..-|+ +.++...+|+|.+...+... ..+.+.+.. ..+|+++..||||.-..... .....+.+...+
T Consensus 92 trVyy---kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~ke-- 165 (229)
T KOG4423|consen 92 TRVYY---KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKE-- 165 (229)
T ss_pred EEEEe---cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhc--
Confidence 22222 23788889999886655443 122222211 24578999999998643222 212222222222
Q ss_pred CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 237 SLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
......+.+|+|.+.++++....+.+..
T Consensus 166 ngf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 166 NGFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred cCccceeeeccccccChhHHHHHHHHHH
Confidence 2356789999999999999998887654
No 387
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.29 E-value=7.6e-06 Score=65.84 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccc-eEEEEEeCCCCCCcch-----HHHHHHHHhhCCcEEEEEe
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK-RVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLT 211 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~vl~vid~~~~~~~~~-----~~~~~~l~~~~~p~iiv~N 211 (269)
..+.++|+||..+-+..-.+ ...+++...+ . +.. .++|++|+..-..... ...+.......+|.|=|++
T Consensus 98 ddylifDcPGQIELytH~pV---m~~iv~hl~~-~-~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvls 172 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPV---MPQIVEHLKQ-W-NFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLS 172 (273)
T ss_pred CCEEEEeCCCeeEEeecChh---HHHHHHHHhc-c-cCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 34899999998764322211 1222222211 1 122 3567777653221111 1222333445799999999
Q ss_pred cCCCCCchHHHHHH---------------------------HHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 212 KTDTVFPIDVARRA---------------------------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 212 K~Dl~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
|+||+......+.. +.+...+..+ .-...+|..+...+.++.++..|-..+
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~--~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDY--SMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccc--cceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 99998652211110 0111111111 123567888888899999999998888
Q ss_pred hhh
Q 024325 265 RFA 267 (269)
Q Consensus 265 ~~~ 267 (269)
++.
T Consensus 251 Qy~ 253 (273)
T KOG1534|consen 251 QYG 253 (273)
T ss_pred Hhc
Confidence 775
No 388
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.29 E-value=5.6e-06 Score=65.92 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=43.2
Q ss_pred ceEEEEEeCCCCCCcchHHHHHH--HHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 176 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 176 d~vl~vid~~~~~~~~~~~~~~~--l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
|++++|+|+..++...+..+.+. +...++|+++|+||+|+.++.......+.+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~ 57 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRR 57 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHh
Confidence 78999999998888877788777 44557899999999999887665555555543
No 389
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.27 E-value=9.9e-06 Score=70.94 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc--ch---------HHHHHHHHh----
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RD---------HELISLMER---- 201 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~--~~---------~~~~~~l~~---- 201 (269)
+..+.+||++|... .+..|..+. ..+++++||+|.++-... .+ ...++.+-.
T Consensus 160 ~~~~~~~DvgGq~~------~R~kW~~~f-------~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 160 NLKFRMFDVGGQRS------ERKKWIHCF-------EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ceEEEEECCCCCcc------cchhHHHHh-------CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 34588999999632 233444332 349999999998752111 00 122222222
Q ss_pred hCCcEEEEEecCCCCC------------------chHHHHHHHHHHHHHHhcCC---CCCCeEEeeCCCCCCHHHHHHHH
Q 024325 202 SQTKYQVVLTKTDTVF------------------PIDVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRTVL 260 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~---~~~~vi~vSa~~g~gi~~L~~~i 260 (269)
.+.|+++++||.|+.. +.+.......+...+..... ...-+..++|..-.++..+++.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 3689999999999642 22344555555555544321 12234568888889999999988
Q ss_pred HHhhhh
Q 024325 261 SKIARF 266 (269)
Q Consensus 261 ~~~~~~ 266 (269)
.+.+.+
T Consensus 307 ~~~i~~ 312 (317)
T cd00066 307 KDIILQ 312 (317)
T ss_pred HHHHHH
Confidence 887654
No 390
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.9e-07 Score=80.66 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=85.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCc----cccC------------CCCCceeE---eeEEEeCCcEEEEcCCCCCCcc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQT---INFFKLGTKLCLVDLPGYGFAY 152 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~----~~~s------------~~~gtt~~---~~~~~~~~~~~lvDtpG~~~~~ 152 (269)
..+|+++....+||||.-.+++--... ..+. ...|.|-. +++.+.|..+.++||||..+-.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 347999999999999998886532100 0011 12233322 3455568899999999975421
Q ss_pred hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHH
Q 024325 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 232 (269)
. ++ -+++...|.++.|+|++.+...+..-++.....+++|.++.+||+|..... .+.....+.+.+
T Consensus 117 l--ev-----------erclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~an-fe~avdsi~ekl 182 (753)
T KOG0464|consen 117 L--EV-----------ERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAAN-FENAVDSIEEKL 182 (753)
T ss_pred E--EH-----------HHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhh-hhhHHHHHHHHh
Confidence 1 11 112223899999999999999888888888888899999999999987543 344444555544
No 391
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.25 E-value=2.2e-05 Score=71.36 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=49.4
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--Cc-EEEEEecCC
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TK-YQVVLTKTD 214 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p-~iiv~NK~D 214 (269)
..++++||||.... .+. ...++. .+ .....+|.+++|+|+..+ . +.++...... .+ .-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~--d~~---lm~El~-~l-~~~~~pdevlLVvda~~g--q---~av~~a~~F~~~l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL--EED---LIEEMK-EI-KEAVKPDEVLLVIDATIG--Q---QAKNQAKAFHEAVGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc--hHH---HHHHHH-HH-HHHhcccceeEEEecccc--H---HHHHHHHHHHhcCCCCEEEEeccc
Confidence 36899999997542 111 111111 11 111237889999998754 1 2233333322 33 357899999
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L 256 (269)
-....... .. +. . ....|+.+++. |+.+++|
T Consensus 244 ~~a~~G~~--ls-~~---~---~~~~Pi~fig~--Ge~v~Dl 274 (437)
T PRK00771 244 GTAKGGGA--LS-AV---A---ETGAPIKFIGT--GEKIDDL 274 (437)
T ss_pred CCCcccHH--HH-HH---H---HHCcCEEEEec--CCCcccC
Confidence 76433221 11 11 1 12578877765 4545444
No 392
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.8e-06 Score=79.05 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=81.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCC--CCceeEe----------------eEEEeCCcEEEEcCCCCCC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDK--PGLTQTI----------------NFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~--~gtt~~~----------------~~~~~~~~~~lvDtpG~~~ 150 (269)
....+|.+.-+-.+||||+-++++-... ....... .+++.|. .+.+.+..+.+|||||+.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 3456899999999999999998763210 1111111 1233321 1222367899999999854
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~ 220 (269)
- ..+..+.+...|..++|+|+..+.+.+..-+..++...++|.+..+||+|.....-
T Consensus 117 F-------------T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 117 F-------------TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASP 173 (721)
T ss_pred E-------------EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCCh
Confidence 2 11122223348999999999989999998888999999999999999999987654
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.23 E-value=5.6e-06 Score=64.29 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 024325 95 IAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~ 114 (269)
+.++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988764
No 394
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.20 E-value=2.7e-05 Score=63.37 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=38.1
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchH-HHHHHHHhhCCcEEEEEecCCCC
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
..+.+|||||..... ....+.+..+ .... ..+-+++|++++.+ ..+. .+.......+ +--++++|.|-.
T Consensus 84 ~D~vlIDT~Gr~~~d--~~~~~el~~~----~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-~~~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRD--EELLEELKKL----LEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAFG-IDGLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTH--HHHHHHHHHH----HHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-TCEEEEESTTSS
T ss_pred CCEEEEecCCcchhh--HHHHHHHHHH----hhhc-CCccceEEEecccC--hHHHHHHHHHhhccc-CceEEEEeecCC
Confidence 569999999986431 1111122222 2222 36789999998743 2222 2333333223 345679999987
Q ss_pred Cc
Q 024325 217 FP 218 (269)
Q Consensus 217 ~~ 218 (269)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 395
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.18 E-value=3.8e-05 Score=65.06 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=75.9
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCCceeE------------------------eeEEE-----
Q 024325 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQT------------------------INFFK----- 135 (269)
Q Consensus 88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~gtt~~------------------------~~~~~----- 135 (269)
+....|.-.+.|+-|||||||+|.++... +++-.-+.-|-..+ +...+
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g 132 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG 132 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence 44567899999999999999999987531 22221111110000 11111
Q ss_pred -----------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-----HHHHHHH
Q 024325 136 -----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLM 199 (269)
Q Consensus 136 -----------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-----~~~~~~l 199 (269)
......++.|.|+..+..--. ..| ...-+..--..|.++-|+|+.+....-+ -.+-+..
T Consensus 133 vraie~lvqkkGkfD~IllETTGlAnPaPia~--~Fw---~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~ 207 (391)
T KOG2743|consen 133 VRAIENLVQKKGKFDHILLETTGLANPAPIAS--MFW---LDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEAT 207 (391)
T ss_pred HHHHHHHHhcCCCcceEEEeccCCCCcHHHHH--HHh---hhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHH
Confidence 123478999999966522110 011 1121222223789999999975322111 1111222
Q ss_pred HhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 200 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 200 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
.+....--+++||.|+++..++....+.++.
T Consensus 208 ~QiA~AD~II~NKtDli~~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 208 RQIALADRIIMNKTDLVSEEEVKKLRQRIRS 238 (391)
T ss_pred HHHhhhheeeeccccccCHHHHHHHHHHHHH
Confidence 2222334678999999998877776666554
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=5.2e-06 Score=73.69 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.++++|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999988753
No 397
>PRK10867 signal recognition particle protein; Provisional
Probab=98.07 E-value=0.00012 Score=66.36 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 215 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl 215 (269)
+..+.++||||.... .+..-.....+.. . ...+.+++|+|+..+ ............ ..+ .-+|+||.|-
T Consensus 183 ~~DvVIIDTaGrl~~--d~~lm~eL~~i~~----~-v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHI--DEELMDELKAIKA----A-VNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCccc--CHHHHHHHHHHHH----h-hCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 356999999997532 1111111112211 1 136778999997521 111222222222 232 4578899996
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325 216 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L 256 (269)
....... -.+... ...|+.+++. |+++++|
T Consensus 253 ~~rgG~a---lsi~~~------~~~PI~fig~--Ge~v~DL 282 (433)
T PRK10867 253 DARGGAA---LSIRAV------TGKPIKFIGT--GEKLDDL 282 (433)
T ss_pred cccccHH---HHHHHH------HCcCEEEEeC--CCccccC
Confidence 5432221 111111 1478777765 4555544
No 398
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.04 E-value=2.1e-05 Score=64.48 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=32.5
Q ss_pred ccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCCCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV 216 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl~ 216 (269)
...+|.+++|+|++..--.....+-+...+.+ +++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 34599999999987532333345555556677 8999999999954
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=0.00012 Score=67.53 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
...|+|+|++|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988764
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.98 E-value=0.00018 Score=65.29 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=49.4
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
+..+.++||||.... .+..-.....+ .. ....+.+++|+|+..+ .............-...-+|+||.|-.
T Consensus 182 ~~DvVIIDTaGr~~~--d~~l~~eL~~i----~~-~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI--DEELMEELAAI----KE-ILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCcccc--CHHHHHHHHHH----HH-hhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 456999999997442 11111111122 11 1236788999998632 222223333322112245779999965
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325 217 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L 256 (269)
...... ..+... ...|+.+++. |+.+++|
T Consensus 253 ~~~G~~---lsi~~~------~~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 253 ARGGAA---LSVRSV------TGKPIKFIGV--GEKIDDL 281 (428)
T ss_pred ccccHH---HHHHHH------HCcCEEEEeC--CCChhhC
Confidence 432221 111111 1477777765 4555554
No 401
>PRK01889 GTPase RsgA; Reviewed
Probab=97.94 E-value=6.7e-06 Score=73.10 Aligned_cols=57 Identities=30% Similarity=0.324 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCC-------CCceeEeeEEEeCCcEEEEcCCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-------~gtt~~~~~~~~~~~~~lvDtpG~~~ 150 (269)
-.++++|.+|+|||||+|.|++... ..++.+ ..+|.............++||||+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence 4799999999999999999998632 222221 12444444444444457889999854
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.00013 Score=65.03 Aligned_cols=117 Identities=26% Similarity=0.357 Sum_probs=61.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCc------------eeEeeEE---------------E--eC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGL------------TQTINFF---------------K--LG 137 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gt------------t~~~~~~---------------~--~~ 137 (269)
...|+++|++|+||||++..|.... .+..++..+.. ..++.+. . .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3589999999999999999886421 12222211110 0000000 0 13
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhhCCcEEEEEecCCCC
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
..++||||||..... ...+ .++ ..+... ...+.+++|+|+.. ...+ ..+++..... ..--+++||.|-.
T Consensus 321 ~DvVLIDTaGRs~kd-~~lm----~EL-~~~lk~-~~PdevlLVLsATt--k~~d~~~i~~~F~~~-~idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRA-SETV----EEM-IETMGQ-VEPDYICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcC-HHHH----HHH-HHHHhh-cCCCeEEEEECCcc--ChHHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence 579999999975421 1112 222 122221 12567888898752 2222 3344433332 2345789999987
Q ss_pred Cc
Q 024325 217 FP 218 (269)
Q Consensus 217 ~~ 218 (269)
..
T Consensus 391 ~k 392 (436)
T PRK11889 391 AS 392 (436)
T ss_pred CC
Confidence 54
No 403
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=8.4e-05 Score=67.08 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..-.|+++|++|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999987753
No 404
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=1.6e-05 Score=71.50 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=74.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccC-CCCCceeE---------------e----eEEE---------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQT---------------I----NFFK--------------- 135 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-~~~gtt~~---------------~----~~~~--------------- 135 (269)
+..++.++.+...|||||-.+|..+. .+++ ...|-|+- . .++.
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kA--gIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKA--GIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhh--ceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 34578888899999999999998763 2222 22221111 0 0110
Q ss_pred eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCC
Q 024325 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (269)
Q Consensus 136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl 215 (269)
.+.-+.++|.||+.+ +..+.-..+...|..++|+|+-.+.--+.+-++.+.-..++.-++|+||+|.
T Consensus 96 ~~FLiNLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCccc-------------chhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence 123488999999844 2233334445579999999998888888877777666667767788999997
Q ss_pred C
Q 024325 216 V 216 (269)
Q Consensus 216 ~ 216 (269)
.
T Consensus 163 A 163 (842)
T KOG0469|consen 163 A 163 (842)
T ss_pred H
Confidence 5
No 405
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.92 E-value=3.8e-05 Score=70.34 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCC----CCceeEeeEEE-eCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK----PGLTQTINFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~----~gtt~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
.+...+.++|+.|+|||.|+++++|+ .+.. ++. +..+.+..... ....+.+-|.+-. .. .+
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr-~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~-----------~~ 488 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGR-SMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQ-----------DF 488 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcc-cccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-cc-----------cc
Confidence 45789999999999999999999997 3333 221 11222222111 1122333333321 00 00
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchHH-HHHH-HHhhCCcEEEEEecCCCCCchHHHHH-HHHHHHHHHhcCCCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISL-MERSQTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANNSLVQP 241 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~-~~~~-l~~~~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (269)
.. .....||+++++.|++++-...-.. +.+. -.....|+++|.+|+|+.+..+.-.. -..+.+.+ . ..+
T Consensus 489 l~---~ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~----~-i~~ 560 (625)
T KOG1707|consen 489 LT---SKEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQL----G-LPP 560 (625)
T ss_pred cc---CccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhc----C-CCC
Confidence 00 0012399999999998432222111 1111 11246899999999999753211110 01111111 1 234
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
-+.+|+++... .+++..|....
T Consensus 561 P~~~S~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 561 PIHISSKTLSS-NELFIKLATMA 582 (625)
T ss_pred CeeeccCCCCC-chHHHHHHHhh
Confidence 46788875322 77887776654
No 406
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.90 E-value=0.00022 Score=63.50 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 193 ~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.+.++.|+..++|+++++|-.+=.. .+.......+.+.. ..|+++++|.+-. -+++...+.+.+
T Consensus 170 ervI~ELk~igKPFvillNs~~P~s-~et~~L~~eL~ekY------~vpVlpvnc~~l~-~~DI~~Il~~vL 233 (492)
T PF09547_consen 170 ERVIEELKEIGKPFVILLNSTKPYS-EETQELAEELEEKY------DVPVLPVNCEQLR-EEDITRILEEVL 233 (492)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCCC-HHHHHHHHHHHHHh------CCcEEEeehHHcC-HHHHHHHHHHHH
Confidence 5788889999999999999877433 33333344444432 5899999996543 445544444443
No 407
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.87 E-value=0.0005 Score=60.26 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC--Ccch---------HHHHHHHHh----
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRD---------HELISLMER---- 201 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~--~~~~---------~~~~~~l~~---- 201 (269)
+..+.++|++|... .+..|- ....++++|+||+..+.-. ...| ..+.+.+-.
T Consensus 194 ~~~f~~~DvGGQRs------eRrKWi-------hcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRS------ERKKWI-------HCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CCceEEEeCCCcHH------HhhhHH-------HhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 45689999999632 122333 3455699999999877421 1112 123333322
Q ss_pred hCCcEEEEEecCCCCCc-----------------hHHHHHHHHHHHHHHhcCCCC-CC--eEEeeCCCCCCHHHHHHHHH
Q 024325 202 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANNSLV-QP--VMMVSSKSGAGIRSLRTVLS 261 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~--vi~vSa~~g~gi~~L~~~i~ 261 (269)
.+.++|+.+||.|+... .........+...+....... .+ +..+.|..-.+|+.+++...
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 25789999999999632 123344455555444432211 22 33446777788899998888
Q ss_pred Hhhhh
Q 024325 262 KIARF 266 (269)
Q Consensus 262 ~~~~~ 266 (269)
+.+.+
T Consensus 341 d~Ii~ 345 (354)
T KOG0082|consen 341 DTIIQ 345 (354)
T ss_pred HHHHH
Confidence 87654
No 408
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.86 E-value=8.9e-05 Score=65.12 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-h-CCcEEEEEecCCCCCchHHHHHHHHHHHH
Q 024325 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (269)
Q Consensus 163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-~-~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 231 (269)
.+...+....+.+|+|+.|+|+.+++.....++-+++.+ . ++..|+|+||+|+++.+.+.+...+++..
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE 205 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence 344455556666999999999999888887777666642 2 38899999999999999988888887765
No 409
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00019 Score=62.88 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCc-----Ccccc-------------------CCCCCceeEe-------------e
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRT-------------------SDKPGLTQTI-------------N 132 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~-------------------s~~~gtt~~~-------------~ 132 (269)
...-.|.++|--|+||||.+-.|...+ ....+ ..+|.++... .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 444578999999999999887665321 11111 1112111100 0
Q ss_pred EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-hCCcEEEEEe
Q 024325 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-SQTKYQVVLT 211 (269)
Q Consensus 133 ~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-~~~p~iiv~N 211 (269)
+-..+..+.++||.|-... ....+.++... ...-..|-+++|+|++-+.... ......+. .++- -+++|
T Consensus 179 fKke~fdvIIvDTSGRh~q-----e~sLfeEM~~v--~~ai~Pd~vi~VmDasiGQaae--~Qa~aFk~~vdvg-~vIlT 248 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQ-----EASLFEEMKQV--SKAIKPDEIIFVMDASIGQAAE--AQARAFKETVDVG-AVILT 248 (483)
T ss_pred HHhcCCcEEEEeCCCchhh-----hHHHHHHHHHH--HhhcCCCeEEEEEeccccHhHH--HHHHHHHHhhccc-eEEEE
Confidence 1112456999999996331 12344444322 1222379999999998553222 11111221 1222 35678
Q ss_pred cCCCCC
Q 024325 212 KTDTVF 217 (269)
Q Consensus 212 K~Dl~~ 217 (269)
|.|-..
T Consensus 249 KlDGha 254 (483)
T KOG0780|consen 249 KLDGHA 254 (483)
T ss_pred ecccCC
Confidence 888653
No 410
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=3.1e-05 Score=68.03 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=93.6
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhcCcC----------------ccccC-------------CCCCceeEee---EEE
Q 024325 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWG----------------VVRTS-------------DKPGLTQTIN---FFK 135 (269)
Q Consensus 88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~----------------~~~~s-------------~~~gtt~~~~---~~~ 135 (269)
+.....+++|+|...+||||+-..++.... ...-+ ...|.|..+. |.+
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 335567999999999999998766553210 00001 1122333322 223
Q ss_pred eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-----CC--cchHHHHHHHHhhC-CcEE
Q 024325 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----VK--PRDHELISLMERSQ-TKYQ 207 (269)
Q Consensus 136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-----~~--~~~~~~~~~l~~~~-~p~i 207 (269)
....+.+.|+||. ..+...++.....+|+.++|+.+..+ +. .+..+........+ ...|
T Consensus 155 e~~~ftiLDApGH-------------k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV 221 (501)
T KOG0459|consen 155 ENKRFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 221 (501)
T ss_pred cceeEEeeccCcc-------------cccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence 3567999999997 34455666677779998888877432 11 12233333333334 4688
Q ss_pred EEEecCCCCCc----hHHHHHHHHHHHHHHhc---CCCCCCeEEeeCCCCCCHHHHHH
Q 024325 208 VVLTKTDTVFP----IDVARRAMQIEESLKAN---NSLVQPVMMVSSKSGAGIRSLRT 258 (269)
Q Consensus 208 iv~NK~Dl~~~----~~~~~~~~~~~~~~~~~---~~~~~~vi~vSa~~g~gi~~L~~ 258 (269)
+++||+|-... +...+....+...+... .......+++|..+|.++.+..+
T Consensus 222 v~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 222 VLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 99999997642 12223333344444421 11234578999999999998765
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.83 E-value=0.00015 Score=64.31 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++||++|+||||-+-.|...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999998776654
No 412
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=0.00033 Score=54.32 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=76.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcC--ccccCCCCCceeEeeEEEeCCcEEEEcCC-CCC---------Ccc-hh--HH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWG--VVRTSDKPGLTQTINFFKLGTKLCLVDLP-GYG---------FAY-AK--EE 156 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~--~~~~s~~~gtt~~~~~~~~~~~~~lvDtp-G~~---------~~~-~~--~~ 156 (269)
..+|++.|+||+|||||+..+.+... -..+... .|..+........|.++|+. |-. .+. .. ..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf--~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF--ITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE--EeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 45899999999999999988775410 0111111 23333221112336666665 321 110 00 00
Q ss_pred HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch---HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (269)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 233 (269)
+...+.-...........+|+++ ||---+..... .+.++.+-..++|+|.++.+-+.- | ..+.++..
T Consensus 83 v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~-P-----~v~~ik~~-- 152 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH-P-----LVQRIKKL-- 152 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC-h-----HHHHhhhc--
Confidence 11222223333333333367654 55322222222 244444455689999999876652 1 12222221
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
..-+++ .+-+|-+.++..|...+..
T Consensus 153 -----~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 153 -----GGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred -----CCEEEE---EccchhhHHHHHHHHHhcc
Confidence 222232 5666777888888776654
No 413
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.80 E-value=0.00017 Score=61.70 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=56.0
Q ss_pred cceEEEEEeCCC-CCCcch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325 175 LKRVCLLIDTKW-GVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252 (269)
Q Consensus 175 ~d~vl~vid~~~-~~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g 252 (269)
.|-+++|+.+.. .+...- ..++-.....++..++|+||+||.++.+... +... ..+...+++++.+|+++++|
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~---~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELL---REYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHH---HHHHhCCeeEEEecCcCccc
Confidence 455555555443 222221 3455556667888889999999998766553 2222 22223479999999999999
Q ss_pred HHHHHHHHHHh
Q 024325 253 IRSLRTVLSKI 263 (269)
Q Consensus 253 i~~L~~~i~~~ 263 (269)
+++|.+.+...
T Consensus 155 ~~~l~~~l~~~ 165 (301)
T COG1162 155 LEELAELLAGK 165 (301)
T ss_pred HHHHHHHhcCC
Confidence 99999988653
No 414
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.79 E-value=0.00031 Score=55.77 Aligned_cols=72 Identities=25% Similarity=0.198 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHH-HhhCCcEEEEEecCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDT 215 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l-~~~~~p~iiv~NK~Dl 215 (269)
+..+.++||||.... ....+ ..+ ..+.. ....+.+++|+|+... ....+....+ ...+ ..-+|+||+|.
T Consensus 82 ~~d~viiDt~g~~~~-~~~~l----~~l-~~l~~-~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQI-DENLM----EEL-KKIKR-VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchh-hHHHH----HHH-HHHHh-hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcC
Confidence 445899999997431 11111 111 11111 1237889999998532 2222333333 2333 35688899998
Q ss_pred CCc
Q 024325 216 VFP 218 (269)
Q Consensus 216 ~~~ 218 (269)
...
T Consensus 152 ~~~ 154 (173)
T cd03115 152 DAR 154 (173)
T ss_pred CCC
Confidence 754
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=0.00025 Score=64.47 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
...++|+|++|+||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999998876543
No 416
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00031 Score=62.36 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
....++++|++|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988764
No 417
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.0012 Score=60.65 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++|+|++|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999888754
No 418
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00016 Score=65.02 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~ 114 (269)
..++++|++|+||||++..|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 419
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.0006 Score=61.12 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc---------CccccCCCC----------------CceeEeeE----------EEe
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW---------GVVRTSDKP----------------GLTQTINF----------FKL 136 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~---------~~~~~s~~~----------------gtt~~~~~----------~~~ 136 (269)
...|+++|++|+||||.+..|.... .+..++..+ |..-.... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4579999999999999997765421 111111111 00000000 002
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--CcEEEEEecCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD 214 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p~iiv~NK~D 214 (269)
+..++++||||.... ....+ .++ ..++.....-.-+++|+|+..+ ...+.+.+.... .+--+++||.|
T Consensus 254 ~~DlVLIDTaGr~~~-~~~~l----~el-~~~l~~~~~~~e~~LVlsat~~----~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPK-DFMKL----AEM-KELLNACGRDAEFHLAVSSTTK----TSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCcc-CHHHH----HHH-HHHHHhcCCCCeEEEEEcCCCC----HHHHHHHHHHhcCCCCCEEEEEecc
Confidence 456999999997542 11111 222 2222222212357889998643 223334444432 24568899999
Q ss_pred CCCc
Q 024325 215 TVFP 218 (269)
Q Consensus 215 l~~~ 218 (269)
-...
T Consensus 324 et~~ 327 (388)
T PRK12723 324 ETTC 327 (388)
T ss_pred CCCc
Confidence 7654
No 420
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.72 E-value=0.0004 Score=53.21 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=61.7
Q ss_pred EEEcCCCCChHHHHHHHhcCc-----CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 96 AFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 96 ~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..-|..|+||||+--.+.... ....+.. |......++.+.++|||+..... .....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~------D~~~~~~~yd~VIiD~p~~~~~~--------~~~~l----- 64 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDA------DLGLANLDYDYIIIDTGAGISDN--------VLDFF----- 64 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEEC------CCCCCCCCCCEEEEECCCCCCHH--------HHHHH-----
Confidence 456789999999876554321 1111111 11111113679999999753210 01111
Q ss_pred cccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 234 (269)
..+|.++++++++..--......++.+... ..++.+|+|+++.. .+..+..+.+.+....
T Consensus 65 --~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r 126 (139)
T cd02038 65 --LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP--KEGKKVFKRLSNVSNR 126 (139)
T ss_pred --HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHH
Confidence 228999999987632111223455555432 35788999999743 3333444445554433
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00028 Score=67.87 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.|+|+|++|+||||++..|.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 47899999999999999888754
No 422
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.61 E-value=4.8e-05 Score=56.44 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+|+++|..|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 6899999999999999998654
No 423
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.50 E-value=0.0018 Score=55.33 Aligned_cols=117 Identities=21% Similarity=0.341 Sum_probs=61.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCC------------ceeEeeEEE-----------------e
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG------------LTQTINFFK-----------------L 136 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~g------------tt~~~~~~~-----------------~ 136 (269)
+...++++|++|+||||++..+.... .+..++..+. ...++.+.. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 45799999999999999998775431 1111111110 000001000 1
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--CcEEEEEecCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD 214 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p~iiv~NK~D 214 (269)
+..+.++||||..... ...+ .++. .+.... ..+.+++|+++... ..+..+.+.... .+--+++||.|
T Consensus 154 ~~D~ViIDt~Gr~~~~-~~~l----~el~-~~~~~~-~~~~~~LVl~a~~~----~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRA-SETV----EEMI-ETMGQV-EPDYICLTLSASMK----SKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCC-HHHH----HHHH-HHHhhh-CCCeEEEEEcCccC----HHHHHHHHHHhCCCCCCEEEEEeec
Confidence 4579999999975421 1112 2221 122211 25678899987521 123333333322 23457899999
Q ss_pred CCCc
Q 024325 215 TVFP 218 (269)
Q Consensus 215 l~~~ 218 (269)
-...
T Consensus 223 et~~ 226 (270)
T PRK06731 223 ETAS 226 (270)
T ss_pred CCCC
Confidence 8754
No 424
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.0045 Score=55.48 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=37.9
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcE-EEEEecCCCC
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTV 216 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~-iiv~NK~Dl~ 216 (269)
..+.++||+|-... + .+...++. .. ...-+.|-+++|+|+.-+-.. ....+...+ ..++ =+|++|.|-.
T Consensus 183 ~DvvIvDTAGRl~i---d--e~Lm~El~-~I-k~~~~P~E~llVvDam~GQdA--~~~A~aF~e-~l~itGvIlTKlDGd 252 (451)
T COG0541 183 YDVVIVDTAGRLHI---D--EELMDELK-EI-KEVINPDETLLVVDAMIGQDA--VNTAKAFNE-ALGITGVILTKLDGD 252 (451)
T ss_pred CCEEEEeCCCcccc---c--HHHHHHHH-HH-HhhcCCCeEEEEEecccchHH--HHHHHHHhh-hcCCceEEEEcccCC
Confidence 46999999995331 1 11222221 11 222347899999998744211 122222221 2332 3778999976
Q ss_pred Cch
Q 024325 217 FPI 219 (269)
Q Consensus 217 ~~~ 219 (269)
...
T Consensus 253 aRG 255 (451)
T COG0541 253 ARG 255 (451)
T ss_pred Ccc
Confidence 543
No 425
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.47 E-value=0.0004 Score=53.10 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 024325 95 IAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~ 115 (269)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999986
No 426
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.0012 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 024325 95 IAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~ 115 (269)
|++.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999986
No 427
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.43 E-value=0.00025 Score=58.20 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=39.0
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHH-------HHHhhCCcEEEEE
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-------LMERSQTKYQVVL 210 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~-------~l~~~~~p~iiv~ 210 (269)
..+.++|.||.-+-+..+.. ...+. .++....---+++.++|+..- .....++. -+-....|-+=|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~---l~~I~-~~Lek~~~rl~~V~LiDs~yc--s~p~~~iS~lL~sl~tMl~melphVNvl 170 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDS---LNKIF-RKLEKLDYRLVAVNLIDSHYC--SDPSKFISSLLVSLATMLHMELPHVNVL 170 (290)
T ss_pred CcEEEEeCCCcEEEEeccch---HHHHH-HHHHHcCceEEEEEeeeceee--CChHHHHHHHHHHHHHHHhhcccchhhh
Confidence 34899999998654332221 11111 112222112235667776432 12222222 2233578889999
Q ss_pred ecCCCCCc
Q 024325 211 TKTDTVFP 218 (269)
Q Consensus 211 NK~Dl~~~ 218 (269)
.|+|+...
T Consensus 171 SK~Dl~~~ 178 (290)
T KOG1533|consen 171 SKADLLKK 178 (290)
T ss_pred hHhHHHHh
Confidence 99999864
No 428
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.31 E-value=0.0024 Score=56.36 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=62.4
Q ss_pred ccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC--eEEeeC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP--VMMVSS 247 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--vi~vSa 247 (269)
...+|+++.|+|+.++.......+-..+... .+.+|+|+|||||++..........+... +| .|-.|-
T Consensus 211 iDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSke--------yPTiAfHAsi 282 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE--------YPTIAFHASI 282 (572)
T ss_pred hcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhh--------Ccceeeehhh
Confidence 3448999999999998888887777777654 35699999999999887666655554432 33 344565
Q ss_pred CCCCCHHHHHHHHHHhh
Q 024325 248 KSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~ 264 (269)
.+..|=..|+..+....
T Consensus 283 ~nsfGKgalI~llRQf~ 299 (572)
T KOG2423|consen 283 NNSFGKGALIQLLRQFA 299 (572)
T ss_pred cCccchhHHHHHHHHHH
Confidence 66678888888777654
No 429
>PRK13695 putative NTPase; Provisional
Probab=97.30 E-value=0.0012 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+|+++|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999987653
No 430
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.26 E-value=0.001 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.|+++|++|||||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999999863
No 431
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0002 Score=59.45 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.|+++|++|||||||+|.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 432
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.23 E-value=0.0019 Score=56.70 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=59.6
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.....+|+|+.|+|+..+..+....+-+.+. ..|.++|+||+|+.+.....+..+.+.... ....+.+|++.
T Consensus 30 ~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~------~~~~~~v~~~~ 101 (322)
T COG1161 30 EVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKEE------GIKPIFVSAKS 101 (322)
T ss_pred HhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHHhcC------CCccEEEEeec
Confidence 3344599999999999887777766655555 355699999999999877655555443321 45678999999
Q ss_pred CCCHHHHHH
Q 024325 250 GAGIRSLRT 258 (269)
Q Consensus 250 g~gi~~L~~ 258 (269)
+.+...+..
T Consensus 102 ~~~~~~i~~ 110 (322)
T COG1161 102 RQGGKKIRK 110 (322)
T ss_pred ccCccchHH
Confidence 888888874
No 433
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0044 Score=55.98 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcE---EEEEe
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKY---QVVLT 211 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~---iiv~N 211 (269)
+..++++||+|-..... .+...+.. +......|.|++|-.+--+-...+ ..+-+.+..+..|- -++++
T Consensus 466 gfDVvLiDTAGR~~~~~-----~lm~~l~k--~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNA-----PLMTSLAK--LIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred CCCEEEEeccccccCCh-----hHHHHHHH--HHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence 55699999999754321 11122211 222344899999987754433222 23444455555453 47899
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
|+|-++..-- ..+ .... ....|++++-+
T Consensus 539 k~dtv~d~vg----~~~-~m~y---~~~~pi~fvg~ 566 (587)
T KOG0781|consen 539 KFDTVDDKVG----AAV-SMVY---ITGKPILFVGV 566 (587)
T ss_pred eccchhhHHH----HHh-hhee---ecCCceEEEec
Confidence 9998764211 111 1111 23678888844
No 434
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0011 Score=54.66 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.|+|.++|..-+||||+-...+.+- +..+.....-.|++... ..-..+.+||.||....+.+.-- +. ..
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D---~e----~i 98 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFD---YE----MI 98 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhh-hhhcceEEeecCCccccCCCccC---HH----HH
Confidence 3789999999999999988776641 00111111112222211 01245789999998654321100 01 11
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHh-----hCCcEEEEEecCCCCCchH
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPID 220 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~ 220 (269)
+ ..+.++++|+|+.......-..+...+.. .++.+=+.+.|+|-++.+-
T Consensus 99 F---~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 99 F---RGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred H---hccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 1 12888999999853211111111111111 2456778899999987644
No 435
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.16 E-value=0.00032 Score=55.62 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.|+|+|++|+|||||+|.+.|-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 37999999999999999999986
No 436
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.14 E-value=0.0079 Score=50.76 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 024325 95 IAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~ 115 (269)
|+++|.|||||||+.+.|...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 437
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.14 E-value=0.00049 Score=44.76 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~ 113 (269)
..+|.|++|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998865
No 438
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.14 E-value=0.00021 Score=68.06 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|.|+++|..++||||.++.+.|.
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~ 52 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGF 52 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhcc
Confidence 45789999999999999999999996
No 439
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.10 E-value=0.00037 Score=57.55 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.|+|+|++|||||||+|.+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 69999999999999999998763
No 440
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.08 E-value=0.00068 Score=54.67 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~ 130 (269)
...|+++|++|||||||+++|+... .......+-||+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~-~~~~~~v~~TTR~ 41 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH-PDFLFSISCTTRA 41 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC-CccccccCccCCC
Confidence 4569999999999999999998873 2233334556654
No 441
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.07 E-value=0.0019 Score=41.02 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=24.2
Q ss_pred cceEEEEEeCCCCCCcc---hHHHHHHHHhh--CCcEEEEEecCC
Q 024325 175 LKRVCLLIDTKWGVKPR---DHELISLMERS--QTKYQVVLTKTD 214 (269)
Q Consensus 175 ~d~vl~vid~~~~~~~~---~~~~~~~l~~~--~~p~iiv~NK~D 214 (269)
.++|+|++|.+...... ...+++.++.. ++|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 67899999998643332 24566666653 799999999998
No 442
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.06 E-value=0.00049 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++|+|+.|+|||||++.|++..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 379999999999999999999984
No 443
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.04 E-value=0.00051 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999886
No 444
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.00 E-value=0.0035 Score=53.60 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=67.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEc-------CCCCCCcchhHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVD-------LPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvD-------tpG~~~~~~~~~~~~~~~~~~ 165 (269)
|-|++.|.|+|||||+.+.|.... .. .+..+.+++ --.+.++......+ ..+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~--~~---------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R---~~l~ 61 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL--EE---------------KGKEVVIISDDSLGIDRNDYADSKKEKEAR---GSLK 61 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH--HH---------------TT--EEEE-THHHH-TTSSS--GGGHHHHH---HHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH--Hh---------------cCCEEEEEcccccccchhhhhchhhhHHHH---HHHH
Confidence 579999999999999999988752 11 011222222 11122221222222 2222
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-----------HHHHHHHHHHHHHh
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-----------VARRAMQIEESLKA 234 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~ 234 (269)
..+.+.+. -+ -++++|...-+...--++....+..+.+..+|.-.+++-.... -.+....+...+..
T Consensus 62 s~v~r~ls-~~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~ 139 (270)
T PF08433_consen 62 SAVERALS-KD-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE 139 (270)
T ss_dssp HHHHHHHT-T--SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred HHHHHhhc-cC-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence 22222222 22 4557888766666667788888888899888887776531100 11222233333322
Q ss_pred cC---CCCCCeEEee-CCCCCCHHHHHHHHH
Q 024325 235 NN---SLVQPVMMVS-SKSGAGIRSLRTVLS 261 (269)
Q Consensus 235 ~~---~~~~~vi~vS-a~~g~gi~~L~~~i~ 261 (269)
-. .+..|.|.+. .-....++++.+.|.
T Consensus 140 P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 140 PDPKNRWDSPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp TTSS-GGGS-SEEEE-TTS---HHHHHHHHH
T ss_pred CCCCCCccCCeEEEecCCCCCCHHHHHHHHH
Confidence 11 2345777776 566667788888774
No 445
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.99 E-value=0.0083 Score=53.13 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=71.0
Q ss_pred eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC--cc------h---HHHHHHHHh---
Q 024325 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PR------D---HELISLMER--- 201 (269)
Q Consensus 136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~--~~------~---~~~~~~l~~--- 201 (269)
.+..+.+||..|... .+..|..+ ..++++++||+|.+.-.. .. - ..+++.+-.
T Consensus 182 ~~~~~~~~DvgGqr~------~R~kW~~~-------f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 182 KKLFFRMFDVGGQRS------ERKKWIHC-------FDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCeEEEEEecCCchh------hhhhHHHH-------hCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 366789999999632 23445443 234999999999884211 00 0 122222222
Q ss_pred -hCCcEEEEEecCCCCCc-----------------hHHHHHHHHHHHHHHhcCC----CCCCeEEeeCCCCCCHHHHHHH
Q 024325 202 -SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTV 259 (269)
Q Consensus 202 -~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~----~~~~vi~vSa~~g~gi~~L~~~ 259 (269)
.+.|+++++||.|+... .+.......+.+.+..... ...-+..++|..-.++..+++.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 35799999999998631 2234445555555544322 1223467888888999999988
Q ss_pred HHHhhh
Q 024325 260 LSKIAR 265 (269)
Q Consensus 260 i~~~~~ 265 (269)
+.+.+-
T Consensus 329 v~~~I~ 334 (342)
T smart00275 329 VKDIIL 334 (342)
T ss_pred HHHHHH
Confidence 877654
No 446
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.98 E-value=0.0043 Score=56.50 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=51.6
Q ss_pred cccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
+-+|+|+.+||+.+++-....++-+..... .+..++++||+||+++.......+++.+. +.++++-||..
T Consensus 173 ErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~-------ni~~vf~SA~~ 244 (562)
T KOG1424|consen 173 ERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQN-------NIPVVFFSALA 244 (562)
T ss_pred hhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhc-------CceEEEEeccc
Confidence 338999999999987666655555555543 35678899999999987766665554332 48899999976
No 447
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.006 Score=52.92 Aligned_cols=152 Identities=21% Similarity=0.304 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc-----Cccc-------------------------cCCCCCceeEeeEE------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVR-------------------------TSDKPGLTQTINFF------ 134 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~-------------------------~s~~~gtt~~~~~~------ 134 (269)
....|+++|-.|+||||-|-.|.... .+.. ++..+|..-....+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 35689999999999999987766321 1110 11111110000000
Q ss_pred -EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc-ccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEe
Q 024325 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV-SLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLT 211 (269)
Q Consensus 135 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~N 211 (269)
..+..+.++||+|-..+.. ..-+.+..+.+-.-.... ..+-+++++|+.-|-.. ..-.+..... .+ .-+++|
T Consensus 218 kar~~DvvliDTAGRLhnk~--nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna--l~QAk~F~ea-v~l~GiIlT 292 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKK--NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA--LSQAKIFNEA-VGLDGIILT 292 (340)
T ss_pred HHcCCCEEEEeCcccccCch--hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH--HHHHHHHHHh-cCCceEEEE
Confidence 0256799999999765422 111222222222111111 13458888898744221 1112222221 22 247899
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHH
Q 024325 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 258 (269)
Q Consensus 212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~ 258 (269)
|+|-....... -.+... ...|+.++- -|+++++|..
T Consensus 293 KlDgtAKGG~i---l~I~~~------l~~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 293 KLDGTAKGGII---LSIAYE------LGIPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred ecccCCCccee---eeHHHH------hCCCEEEEe--CCCChhhccc
Confidence 99955432211 111111 257888884 4778888763
No 448
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.96 E-value=0.00064 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
|.|+++|+.|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998875
No 449
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.95 E-value=0.0008 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+.++|+|++|||||||+++|...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4578999999999999999999875
No 450
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.91 E-value=0.0011 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+|+|++|||||||++.|...
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhc
Confidence 46888999999999999999865
No 451
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.90 E-value=0.0069 Score=42.40 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=41.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (269)
+++.|..|+||||+...+.... .. ... .+... + .+.++|+||...... .+ .......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l--~~-~g~-----~v~~~--~-d~iivD~~~~~~~~~---------~~---~~~~~~~ 58 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL--AK-RGK-----RVLLI--D-DYVLIDTPPGLGLLV---------LL---CLLALLA 58 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HH-CCC-----eEEEE--C-CEEEEeCCCCccchh---------hh---hhhhhhh
Confidence 6788999999999998887652 11 111 11111 1 689999998643210 00 0111223
Q ss_pred cceEEEEEeCCC
Q 024325 175 LKRVCLLIDTKW 186 (269)
Q Consensus 175 ~d~vl~vid~~~ 186 (269)
+|.++++++...
T Consensus 59 ~~~vi~v~~~~~ 70 (99)
T cd01983 59 ADLVIIVTTPEA 70 (99)
T ss_pred CCEEEEecCCch
Confidence 888999988764
No 452
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.90 E-value=0.0023 Score=54.42 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=41.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCC-CCCceeEeeEEEe------CCcEEEEcCCCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKL------GTKLCLVDLPGYGF 150 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~gtt~~~~~~~~------~~~~~lvDtpG~~~ 150 (269)
+.-.|+|+|+..+|||.|+|.|++......+++ ...+|..+-.+.. +..+.++||.|+++
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 456899999999999999999998633233333 2345655543321 34599999999976
No 453
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.88 E-value=0.019 Score=45.42 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=39.2
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCC
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF 217 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~ 217 (269)
.+.++|||+.... . .... +..+|.+++++++.......-..+++.+...+.+ ..+|+|++|...
T Consensus 64 d~viiD~p~~~~~---~---------~~~~---l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER---G---------FITA---IAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH---H---------HHHH---HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 6999999975321 0 0111 1238999999987643222233556666655544 678999998654
No 454
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.87 E-value=0.0081 Score=45.21 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...+.+.|++|+|||+|++.+.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999987
No 455
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.84 E-value=0.011 Score=42.96 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=50.6
Q ss_pred EcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccce
Q 024325 98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR 177 (269)
Q Consensus 98 vG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 177 (269)
-+..|+||||+.-.|.... +......-.--|.... .+..+.++|||+..... ...... .+|.
T Consensus 6 ~~kgg~gkt~~~~~la~~~--~~~~~~~~~l~d~d~~-~~~D~IIiDtpp~~~~~--------~~~~l~-------~aD~ 67 (106)
T cd03111 6 GAKGGVGATTLAANLAVAL--AKEAGRRVLLVDLDLQ-FGDDYVVVDLGRSLDEV--------SLAALD-------QADR 67 (106)
T ss_pred CCCCCCcHHHHHHHHHHHH--HhcCCCcEEEEECCCC-CCCCEEEEeCCCCcCHH--------HHHHHH-------HcCe
Confidence 4568999999876655431 1110110011111111 12268999999863310 011111 2899
Q ss_pred EEEEEeCCCCCCcchHHHHHHHHhhC----CcEEEEEec
Q 024325 178 VCLLIDTKWGVKPRDHELISLMERSQ----TKYQVVLTK 212 (269)
Q Consensus 178 vl~vid~~~~~~~~~~~~~~~l~~~~----~p~iiv~NK 212 (269)
++++++++..-...-..+++.+...+ .++.+|+|+
T Consensus 68 vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 68 VFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 99999876432222345555555543 356788875
No 456
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.015 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..-+|+++|.-|+|||||++.|.++
T Consensus 187 df~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhcc
Confidence 4568999999999999999999876
No 457
>PRK04195 replication factor C large subunit; Provisional
Probab=96.81 E-value=0.044 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.+.+.|+||+||||+++++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999886
No 458
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.77 E-value=0.014 Score=50.24 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
...|+++++|.+|.|||++++.+...+
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 456899999999999999999999874
No 459
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.75 E-value=0.0013 Score=43.91 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 024325 95 IAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~ 115 (269)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999876
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.74 E-value=0.0012 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||+++|++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999986
No 461
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0014 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.|+++|++|||||||+.+|-+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999998875
No 462
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.70 E-value=0.0013 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+|+|++|||||||+++|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999875
No 463
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.70 E-value=0.0014 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|+|||||++.|.|.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999987
No 464
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.70 E-value=0.0016 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.++++|+.|+|||||++.|.|.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 347999999999999999999987
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.70 E-value=0.0015 Score=52.32 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.|+++|.|||||||+.+.|...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 466
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.69 E-value=0.035 Score=46.03 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=50.9
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh------hCCcEEEEE
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKYQVVL 210 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~------~~~p~iiv~ 210 (269)
+..++|+||+|.... +....+.. +|+|++-.-.+...-....+.++++.+ ..+|.-+++
T Consensus 83 ~~d~VlvDleG~as~------------~~~~aia~---sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~ 147 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE------------LNDYAIAR---SDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLF 147 (231)
T ss_pred CCCEEEEeCCCCCch------------hHHHHHHH---CCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEE
Confidence 356899999997542 11122222 787776443321100111222333322 357999999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHH
Q 024325 211 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 258 (269)
Q Consensus 211 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~ 258 (269)
|++.-.. .......+.+.+. ..|++.++-.....+.+++.
T Consensus 148 Tr~~~~~---~~~~~~~~~e~~~-----~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 148 TRVPAAR---LTRAQRIISEQLE-----SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred ecCCcch---hhHHHHHHHHHHh-----cCCccccccccHHHHHHHHH
Confidence 9987432 2222223333333 36777777766665555554
No 467
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0014 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999873
No 468
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.67 E-value=0.0015 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|+|||||++.|.|..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999863
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.0013 Score=57.63 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-++++|++|||||||++.+.|-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 470
>PRK07261 topology modulation protein; Provisional
Probab=96.67 E-value=0.0015 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998765
No 471
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.66 E-value=0.0018 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|+.|+|||||++.|.|..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999873
No 472
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0016 Score=53.49 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|+|||||++.|.|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
No 473
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.65 E-value=0.0015 Score=53.82 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|+.|+|||||++.|.|..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3479999999999999999999873
No 474
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0016 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|+|||||++.|.|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999986
No 475
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.63 E-value=0.0016 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.++++|+.|||||||++.|+|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999986
No 476
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.63 E-value=0.0017 Score=50.05 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999999973
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.62 E-value=0.0017 Score=47.31 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~ 113 (269)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999987
No 478
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.62 E-value=0.0018 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|+++|+|||||||++..|...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999865
No 479
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.62 E-value=0.0021 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
.-.++++|+.|+|||||++.+++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34799999999999999999874
No 480
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.62 E-value=0.0017 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|+|||||++.|.|.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999987
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.60 E-value=0.0018 Score=52.19 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|+|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999876
No 482
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.60 E-value=0.0018 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|++|+|||||++.|.|..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999873
No 483
>PRK14530 adenylate kinase; Provisional
Probab=96.60 E-value=0.0017 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++|+|+|+|||||||+.+.|....
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998654
No 484
>PRK08118 topology modulation protein; Reviewed
Probab=96.59 E-value=0.0018 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 485
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.58 E-value=0.0012 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+|+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999865
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.58 E-value=0.0019 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998775
No 487
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0019 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++|+|+.|+|||||+..|+|..
T Consensus 27 Gev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhhCcc
Confidence 4479999999999999999999973
No 488
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0019 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|+|||||++.|.|.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999987
No 489
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.57 E-value=0.0018 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|+|||||++.|.|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999986
No 490
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.57 E-value=0.0019 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|++|+|||||++.|.|..
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999973
No 491
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0019 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.++++|+.|+|||||++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999986
No 492
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.002 Score=52.88 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|+|||||++.|.|.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999987
No 493
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.56 E-value=0.0019 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|+|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999873
No 494
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.002 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|+|||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999873
No 495
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.55 E-value=0.0019 Score=54.17 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|.|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999863
No 496
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0013 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
..+++.|++|+|||||+++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999874
No 497
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.54 E-value=0.0025 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|+.|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999999873
No 498
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.002 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|+|||||++.|.|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999873
No 499
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.53 E-value=0.0082 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.|+++|++||||+||.+.|....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998873
No 500
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.53 E-value=0.0026 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..++++|++|+||||++..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 47999999999999999999886
Done!