Query 024325
Match_columns 269
No_of_seqs 277 out of 2551
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dhe_A Probable GTP-binding pr 100.0 1E-28 3.5E-33 203.5 18.5 181 86-266 23-211 (223)
2 3pqc_A Probable GTP-binding pr 100.0 5.6E-28 1.9E-32 194.4 22.3 179 84-265 15-193 (195)
3 1svi_A GTP-binding protein YSX 100.0 7.9E-28 2.7E-32 194.0 20.2 178 86-265 17-194 (195)
4 3gee_A MNME, tRNA modification 100.0 6.3E-29 2.2E-33 226.3 11.9 236 8-265 154-397 (476)
5 3iev_A GTP-binding protein ERA 99.9 1.2E-25 4.3E-30 194.5 17.2 167 92-266 10-182 (308)
6 3geh_A MNME, tRNA modification 99.9 3.2E-27 1.1E-31 214.3 6.6 234 9-266 147-384 (462)
7 1xzp_A Probable tRNA modificat 99.9 5.4E-27 1.8E-31 213.7 7.4 155 92-265 243-404 (482)
8 2qtf_A Protein HFLX, GTP-bindi 99.9 2.8E-25 9.6E-30 196.1 15.5 238 15-266 104-354 (364)
9 1wf3_A GTP-binding protein; GT 99.9 5E-25 1.7E-29 190.0 15.8 159 93-265 8-172 (301)
10 3iby_A Ferrous iron transport 99.9 6E-25 2.1E-29 185.3 9.0 160 93-263 2-164 (256)
11 2dyk_A GTP-binding protein; GT 99.9 8.3E-24 2.8E-28 164.8 13.6 156 93-264 2-160 (161)
12 2qu8_A Putative nucleolar GTP- 99.9 3.4E-23 1.2E-27 171.4 16.5 170 90-266 27-205 (228)
13 3i8s_A Ferrous iron transport 99.9 1E-24 3.6E-29 185.7 7.5 163 92-265 3-168 (274)
14 1mky_A Probable GTP-binding pr 99.9 1.7E-23 5.9E-28 189.5 15.5 160 93-265 2-165 (439)
15 2hjg_A GTP-binding protein ENG 99.9 5.5E-24 1.9E-28 192.6 12.1 171 90-266 173-349 (436)
16 2cxx_A Probable GTP-binding pr 99.9 2.4E-22 8E-27 160.9 19.4 169 93-266 2-184 (190)
17 4dcu_A GTP-binding protein ENG 99.9 1.7E-23 5.8E-28 190.4 14.0 172 90-266 193-369 (456)
18 2gj8_A MNME, tRNA modification 99.9 1.7E-23 5.9E-28 165.9 12.2 157 92-266 4-166 (172)
19 2hjg_A GTP-binding protein ENG 99.9 1.9E-23 6.6E-28 189.0 13.0 158 93-265 4-164 (436)
20 3a1s_A Iron(II) transport prot 99.9 5.8E-23 2E-27 173.4 13.5 159 92-265 5-166 (258)
21 1ega_A Protein (GTP-binding pr 99.9 5.8E-23 2E-27 177.2 13.7 162 92-265 8-174 (301)
22 2lkc_A Translation initiation 99.9 1E-23 3.4E-28 167.2 8.1 162 90-268 6-173 (178)
23 3b1v_A Ferrous iron uptake tra 99.9 4.5E-23 1.5E-27 175.2 11.8 159 92-265 3-163 (272)
24 1pui_A ENGB, probable GTP-bind 99.9 5.8E-22 2E-26 161.5 17.2 179 87-266 21-199 (210)
25 3q72_A GTP-binding protein RAD 99.9 1.4E-22 4.9E-27 158.6 12.4 157 92-267 2-165 (166)
26 3t5d_A Septin-7; GTP-binding p 99.9 1.8E-22 6.2E-27 171.8 13.9 171 92-267 8-205 (274)
27 2wji_A Ferrous iron transport 99.9 7.6E-23 2.6E-27 160.9 10.5 158 93-265 4-164 (165)
28 1upt_A ARL1, ADP-ribosylation 99.9 1.9E-22 6.6E-27 158.5 12.6 159 91-266 6-169 (171)
29 1mky_A Probable GTP-binding pr 99.9 6.6E-22 2.3E-26 179.1 17.8 171 91-266 179-355 (439)
30 4dcu_A GTP-binding protein ENG 99.9 1.9E-22 6.6E-27 183.4 13.3 159 92-265 23-184 (456)
31 4bas_A ADP-ribosylation factor 99.9 4.6E-22 1.6E-26 160.4 13.9 161 90-266 15-189 (199)
32 1wb1_A Translation elongation 99.9 5.4E-22 1.9E-26 181.3 16.0 161 92-265 19-188 (482)
33 2fh5_B SR-beta, signal recogni 99.9 1.6E-21 5.6E-26 159.4 17.2 156 91-263 6-213 (214)
34 3sjy_A Translation initiation 99.9 9.8E-22 3.3E-26 176.1 16.3 162 90-265 6-191 (403)
35 1fzq_A ADP-ribosylation factor 99.9 3.3E-22 1.1E-26 159.6 11.7 159 91-266 15-178 (181)
36 2nzj_A GTP-binding protein REM 99.9 9.7E-22 3.3E-26 155.1 14.2 157 92-266 4-169 (175)
37 1r8s_A ADP-ribosylation factor 99.9 7E-22 2.4E-26 154.4 13.3 157 93-267 1-163 (164)
38 1ksh_A ARF-like protein 2; sma 99.9 7.7E-22 2.6E-26 157.7 13.5 159 91-266 17-180 (186)
39 3k53_A Ferrous iron transport 99.9 2.2E-22 7.6E-27 171.0 10.8 159 92-265 3-165 (271)
40 4dsu_A GTPase KRAS, isoform 2B 99.9 7E-22 2.4E-26 157.8 13.1 153 92-266 4-166 (189)
41 2h57_A ADP-ribosylation factor 99.9 3.1E-22 1.1E-26 160.7 11.0 162 91-268 20-189 (190)
42 2aka_B Dynamin-1; fusion prote 99.9 1.8E-22 6.2E-27 173.5 9.9 171 88-265 22-252 (299)
43 1zj6_A ADP-ribosylation factor 99.9 8.7E-22 3E-26 157.7 13.2 158 91-265 15-177 (187)
44 1kk1_A EIF2gamma; initiation o 99.9 1.9E-21 6.5E-26 174.6 16.8 163 90-265 8-199 (410)
45 2h17_A ADP-ribosylation factor 99.9 3E-22 1E-26 159.7 9.5 156 91-263 20-180 (181)
46 1s0u_A EIF-2-gamma, translatio 99.9 2.6E-21 9E-26 173.6 16.5 163 90-265 6-197 (408)
47 1zd9_A ADP-ribosylation factor 99.9 1.6E-21 5.4E-26 156.4 13.5 159 92-266 22-185 (188)
48 2wjg_A FEOB, ferrous iron tran 99.9 7.2E-22 2.5E-26 158.0 11.0 160 92-266 7-169 (188)
49 2g6b_A RAS-related protein RAB 99.9 5.2E-21 1.8E-25 151.7 15.7 155 92-266 10-174 (180)
50 1wms_A RAB-9, RAB9, RAS-relate 99.9 4E-21 1.4E-25 151.9 14.8 154 92-265 7-173 (177)
51 1z0j_A RAB-22, RAS-related pro 99.9 1.9E-21 6.7E-26 152.5 12.6 155 92-265 6-168 (170)
52 2ce2_X GTPase HRAS; signaling 99.9 8.8E-21 3E-25 147.7 16.2 151 93-265 4-164 (166)
53 3j2k_7 ERF3, eukaryotic polype 99.9 7E-21 2.4E-25 172.2 17.5 155 90-258 15-217 (439)
54 2bov_A RAla, RAS-related prote 99.9 1.4E-20 4.6E-25 152.6 17.2 156 90-266 12-177 (206)
55 1kao_A RAP2A; GTP-binding prot 99.9 3.7E-21 1.3E-25 150.2 13.3 152 93-266 4-166 (167)
56 1z0f_A RAB14, member RAS oncog 99.9 4.9E-21 1.7E-25 151.4 14.0 156 92-265 15-177 (179)
57 1c1y_A RAS-related protein RAP 99.9 4E-21 1.4E-25 150.2 13.2 153 93-265 4-166 (167)
58 2erx_A GTP-binding protein DI- 99.9 5.5E-21 1.9E-25 150.0 14.0 156 92-266 3-167 (172)
59 2xtp_A GTPase IMAP family memb 99.9 2.1E-21 7.2E-26 163.8 12.4 171 90-266 20-208 (260)
60 2il1_A RAB12; G-protein, GDP, 99.9 2E-21 6.7E-26 156.5 11.6 158 91-265 25-189 (192)
61 2b6h_A ADP-ribosylation factor 99.9 2.3E-21 7.7E-26 156.3 11.8 159 90-265 27-190 (192)
62 1g16_A RAS-related protein SEC 99.9 2.9E-21 9.8E-26 151.5 12.1 153 92-265 3-164 (170)
63 2p5s_A RAS and EF-hand domain 99.9 1.2E-20 4E-25 152.7 15.9 157 90-265 26-196 (199)
64 2x77_A ADP-ribosylation factor 99.9 6.3E-22 2.2E-26 158.7 8.3 160 91-267 21-185 (189)
65 1f6b_A SAR1; gtpases, N-termin 99.9 8.3E-22 2.8E-26 159.6 9.1 154 92-264 25-197 (198)
66 1ek0_A Protein (GTP-binding pr 99.9 4.6E-21 1.6E-25 150.2 13.1 153 93-264 4-167 (170)
67 3tkl_A RAS-related protein RAB 99.9 5.9E-21 2E-25 153.5 13.9 155 92-266 16-179 (196)
68 1u8z_A RAS-related protein RAL 99.9 1.7E-20 5.7E-25 146.6 16.1 153 92-265 4-166 (168)
69 2fn4_A P23, RAS-related protei 99.9 2.9E-21 1E-25 153.0 11.9 155 90-266 7-172 (181)
70 3tw8_B RAS-related protein RAB 99.9 2E-21 6.9E-26 154.0 10.8 155 91-266 8-171 (181)
71 2efe_B Small GTP-binding prote 99.9 7.7E-21 2.6E-25 150.8 14.1 157 92-266 12-175 (181)
72 3cph_A RAS-related protein SEC 99.9 5.2E-21 1.8E-25 155.9 13.4 155 90-265 18-181 (213)
73 1ky3_A GTP-binding protein YPT 99.9 6.9E-21 2.4E-25 151.0 13.8 155 91-265 7-177 (182)
74 2fg5_A RAB-22B, RAS-related pr 99.9 3.9E-21 1.3E-25 154.6 12.3 157 92-266 23-186 (192)
75 3bc1_A RAS-related protein RAB 99.9 2E-20 6.7E-25 149.8 16.1 153 92-265 11-184 (195)
76 1zbd_A Rabphilin-3A; G protein 99.9 1.4E-20 4.8E-25 152.5 15.4 155 92-265 8-170 (203)
77 1moz_A ARL1, ADP-ribosylation 99.9 2.2E-21 7.7E-26 154.3 10.5 159 91-266 17-180 (183)
78 3con_A GTPase NRAS; structural 99.9 2.2E-20 7.5E-25 149.7 16.1 153 93-267 22-184 (190)
79 1r2q_A RAS-related protein RAB 99.9 6.8E-21 2.3E-25 149.2 12.8 156 92-265 6-168 (170)
80 3clv_A RAB5 protein, putative; 99.9 1.8E-20 6.1E-25 151.2 15.4 153 91-265 6-203 (208)
81 3reg_A RHO-like small GTPase; 99.9 2.6E-21 8.9E-26 155.8 10.5 156 92-266 23-188 (194)
82 1z08_A RAS-related protein RAB 99.9 1.5E-20 5.1E-25 147.5 14.5 154 92-265 6-168 (170)
83 3qq5_A Small GTP-binding prote 99.9 7.4E-22 2.5E-26 177.0 7.9 158 89-264 31-194 (423)
84 2e87_A Hypothetical protein PH 99.9 6E-20 2.1E-24 162.0 20.0 161 90-265 165-335 (357)
85 2gf0_A GTP-binding protein DI- 99.8 2.4E-20 8.3E-25 150.3 16.1 156 91-265 7-170 (199)
86 3llu_A RAS-related GTP-binding 99.8 2E-20 6.7E-25 151.1 15.4 164 90-264 18-195 (196)
87 2gf9_A RAS-related protein RAB 99.8 6.3E-21 2.2E-25 152.9 12.3 155 92-265 22-184 (189)
88 2a9k_A RAS-related protein RAL 99.8 1.8E-20 6.2E-25 149.2 14.8 155 92-267 18-182 (187)
89 3t1o_A Gliding protein MGLA; G 99.8 1.9E-20 6.3E-25 150.5 14.7 153 92-265 14-191 (198)
90 1lnz_A SPO0B-associated GTP-bi 99.8 1.9E-21 6.6E-26 170.0 9.3 160 92-266 158-330 (342)
91 3kkq_A RAS-related protein M-R 99.8 1.9E-20 6.6E-25 149.0 14.3 153 91-265 17-181 (183)
92 4gzl_A RAS-related C3 botulinu 99.8 6E-21 2.1E-25 155.2 11.5 156 91-264 29-203 (204)
93 3t5g_A GTP-binding protein RHE 99.8 1.5E-21 5E-26 155.2 7.5 155 91-266 5-169 (181)
94 1z2a_A RAS-related protein RAB 99.8 8.5E-21 2.9E-25 148.5 11.7 153 92-265 5-166 (168)
95 1m2o_B GTP-binding protein SAR 99.8 7E-21 2.4E-25 153.1 11.5 153 92-263 23-189 (190)
96 1x3s_A RAS-related protein RAB 99.8 1.1E-20 3.9E-25 151.6 12.7 155 92-265 15-177 (195)
97 2y8e_A RAB-protein 6, GH09086P 99.8 1.6E-20 5.4E-25 148.5 13.2 153 93-265 15-176 (179)
98 2ew1_A RAS-related protein RAB 99.8 3.3E-20 1.1E-24 150.7 15.2 153 92-265 26-188 (201)
99 3dz8_A RAS-related protein RAB 99.8 4.7E-21 1.6E-25 154.0 10.1 156 91-265 22-185 (191)
100 3q85_A GTP-binding protein REM 99.8 3.4E-20 1.2E-24 145.4 14.7 157 92-267 2-168 (169)
101 1vg8_A RAS-related protein RAB 99.8 7.8E-21 2.7E-25 154.2 11.3 155 91-265 7-174 (207)
102 3lxw_A GTPase IMAP family memb 99.8 2.7E-20 9.3E-25 156.0 14.9 169 91-266 20-208 (247)
103 4djt_A GTP-binding nuclear pro 99.8 3.1E-21 1.1E-25 158.1 9.0 158 91-266 10-175 (218)
104 3bwd_D RAC-like GTP-binding pr 99.8 4.4E-21 1.5E-25 152.4 9.6 156 91-264 7-179 (182)
105 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.3E-20 4.6E-25 150.0 12.3 156 92-265 5-179 (186)
106 2hxs_A RAB-26, RAS-related pro 99.8 2.5E-20 8.7E-25 147.4 13.7 156 92-266 6-173 (178)
107 2bme_A RAB4A, RAS-related prot 99.8 2.5E-20 8.7E-25 148.6 13.8 154 92-265 10-172 (186)
108 2a5j_A RAS-related protein RAB 99.8 1.7E-20 5.8E-25 150.7 12.7 154 92-265 21-183 (191)
109 2j69_A Bacterial dynamin-like 99.8 3E-21 1E-25 183.4 9.7 164 91-265 68-324 (695)
110 2iwr_A Centaurin gamma 1; ANK 99.8 2.3E-20 7.7E-25 147.9 13.3 149 92-265 7-168 (178)
111 2oil_A CATX-8, RAS-related pro 99.8 2.6E-20 8.9E-25 149.7 13.7 155 92-265 25-187 (193)
112 2elf_A Protein translation elo 99.8 1.5E-20 5E-25 166.3 13.3 147 94-265 23-179 (370)
113 1z06_A RAS-related protein RAB 99.8 1.9E-20 6.3E-25 150.1 12.6 156 91-265 19-187 (189)
114 2hup_A RAS-related protein RAB 99.8 4.4E-20 1.5E-24 149.7 14.7 154 92-265 29-192 (201)
115 2j1l_A RHO-related GTP-binding 99.8 5.7E-20 2E-24 150.5 15.2 157 92-266 34-209 (214)
116 2fu5_C RAS-related protein RAB 99.8 6.5E-21 2.2E-25 151.7 9.3 153 92-265 8-170 (183)
117 2bcg_Y Protein YP2, GTP-bindin 99.8 3.3E-20 1.1E-24 150.7 13.5 154 92-265 8-170 (206)
118 3ihw_A Centg3; RAS, centaurin, 99.8 3E-20 1E-24 148.7 12.8 153 91-266 19-180 (184)
119 2q3h_A RAS homolog gene family 99.8 8.8E-21 3E-25 153.4 9.8 159 90-266 18-195 (201)
120 3oes_A GTPase rhebl1; small GT 99.8 4.3E-21 1.5E-25 155.5 7.9 156 89-266 21-187 (201)
121 2fv8_A H6, RHO-related GTP-bin 99.8 2.3E-20 7.8E-25 152.0 11.9 156 93-266 26-200 (207)
122 2gco_A H9, RHO-related GTP-bin 99.8 2.1E-20 7.1E-25 151.5 11.6 155 93-264 26-198 (201)
123 3lxx_A GTPase IMAP family memb 99.8 1.3E-19 4.6E-24 150.9 16.8 169 90-266 27-214 (239)
124 2atx_A Small GTP binding prote 99.8 3.4E-20 1.2E-24 149.1 12.7 155 92-264 18-191 (194)
125 3cbq_A GTP-binding protein REM 99.8 7E-20 2.4E-24 147.9 14.4 158 90-266 21-188 (195)
126 2o52_A RAS-related protein RAB 99.8 2.4E-20 8.3E-25 151.1 11.5 154 92-265 25-187 (200)
127 2atv_A RERG, RAS-like estrogen 99.8 1.6E-19 5.5E-24 145.5 16.2 153 91-266 27-191 (196)
128 3o47_A ADP-ribosylation factor 99.8 1.1E-20 3.7E-25 164.9 9.9 158 92-267 165-328 (329)
129 2j0v_A RAC-like GTP-binding pr 99.8 3.7E-20 1.3E-24 151.1 12.1 157 91-265 8-179 (212)
130 1jwy_B Dynamin A GTPase domain 99.8 1E-20 3.6E-25 163.8 9.2 168 90-266 22-262 (315)
131 2yc2_C IFT27, small RAB-relate 99.8 2.4E-20 8.3E-25 151.2 10.7 155 92-265 20-191 (208)
132 3q3j_B RHO-related GTP-binding 99.8 2.3E-20 7.8E-25 153.0 10.6 156 91-265 26-202 (214)
133 1g7s_A Translation initiation 99.8 2E-20 7E-25 174.3 11.5 158 92-265 5-217 (594)
134 3r7w_A Gtpase1, GTP-binding pr 99.8 1E-19 3.5E-24 157.3 15.1 162 92-263 3-178 (307)
135 2f7s_A C25KG, RAS-related prot 99.8 8.4E-20 2.9E-24 149.5 13.7 152 92-265 25-198 (217)
136 2x2e_A Dynamin-1; nitration, h 99.8 3.8E-21 1.3E-25 169.4 5.8 168 90-263 29-255 (353)
137 1zun_B Sulfate adenylate trans 99.8 4.8E-20 1.6E-24 166.6 13.0 152 91-255 23-213 (434)
138 3p26_A Elongation factor 1 alp 99.8 4.7E-20 1.6E-24 168.8 12.9 152 91-255 32-227 (483)
139 3gj0_A GTP-binding nuclear pro 99.8 3.6E-21 1.2E-25 158.3 4.9 155 91-265 14-174 (221)
140 1d2e_A Elongation factor TU (E 99.8 1E-19 3.5E-24 162.6 14.1 160 93-265 4-194 (397)
141 2c78_A Elongation factor TU-A; 99.8 4.6E-20 1.6E-24 165.4 11.4 162 91-265 10-211 (405)
142 3cpj_B GTP-binding protein YPT 99.8 5.2E-20 1.8E-24 151.6 10.7 155 92-265 13-175 (223)
143 2g3y_A GTP-binding protein GEM 99.8 9.3E-20 3.2E-24 149.2 11.9 155 92-265 37-202 (211)
144 3izy_P Translation initiation 99.8 5.6E-22 1.9E-26 182.2 -2.1 158 92-265 4-167 (537)
145 3izq_1 HBS1P, elongation facto 99.8 6.6E-20 2.3E-24 171.7 11.9 153 90-256 165-362 (611)
146 3lvq_E ARF-GAP with SH3 domain 99.8 6.3E-20 2.2E-24 168.6 10.5 155 92-266 322-484 (497)
147 4dkx_A RAS-related protein RAB 99.8 2.1E-19 7.3E-24 147.5 12.5 151 93-265 14-175 (216)
148 3th5_A RAS-related C3 botulinu 99.7 1.8E-21 6.3E-26 158.0 0.0 155 91-264 29-203 (204)
149 3c5c_A RAS-like protein 12; GD 99.8 1.8E-19 6.1E-24 144.4 11.4 151 92-265 21-185 (187)
150 2zej_A Dardarin, leucine-rich 99.8 4.2E-19 1.4E-23 141.8 13.2 159 93-267 3-179 (184)
151 2www_A Methylmalonic aciduria 99.8 1E-19 3.5E-24 159.9 10.4 156 90-265 72-278 (349)
152 3zvr_A Dynamin-1; hydrolase, D 99.8 1.5E-19 5E-24 171.3 11.9 167 90-263 49-275 (772)
153 3tr5_A RF-3, peptide chain rel 99.8 3.5E-19 1.2E-23 164.1 14.0 114 92-218 13-149 (528)
154 3mca_A HBS1, elongation factor 99.8 3.2E-21 1.1E-25 180.0 -0.0 161 90-264 175-395 (592)
155 3cb4_D GTP-binding protein LEP 99.8 4.9E-19 1.7E-23 164.9 13.7 157 92-265 4-181 (599)
156 1zo1_I IF2, translation initia 99.8 1.1E-20 3.7E-25 172.3 1.5 157 91-263 3-164 (501)
157 1jny_A EF-1-alpha, elongation 99.8 5.7E-19 2E-23 159.6 12.8 152 91-255 5-202 (435)
158 4a9a_A Ribosome-interacting GT 99.8 5.2E-19 1.8E-23 155.8 11.8 91 88-186 68-161 (376)
159 2wkq_A NPH1-1, RAS-related C3 99.8 4E-19 1.4E-23 154.4 11.1 155 92-264 155-328 (332)
160 1m7b_A RND3/RHOE small GTP-bin 99.8 3.1E-19 1.1E-23 142.4 9.5 155 92-264 7-181 (184)
161 2cjw_A GTP-binding protein GEM 99.8 2.9E-19 9.9E-24 144.0 9.1 156 92-265 6-171 (192)
162 2ywe_A GTP-binding protein LEP 99.8 6.3E-19 2.2E-23 163.9 12.4 158 91-265 5-183 (600)
163 1wxq_A GTP-binding protein; st 99.8 1.3E-19 4.6E-24 161.5 7.1 86 94-187 2-114 (397)
164 1f60_A Elongation factor EEF1A 99.8 1.1E-19 3.8E-24 165.1 6.5 152 92-256 7-202 (458)
165 3avx_A Elongation factor TS, e 99.8 3.4E-18 1.2E-22 166.7 17.2 161 91-264 295-484 (1289)
166 3p32_A Probable GTPase RV1496/ 99.8 1.4E-18 4.9E-23 153.0 12.2 156 91-266 78-284 (355)
167 1gwn_A RHO-related GTP-binding 99.8 7.8E-19 2.7E-23 143.0 9.6 155 92-264 28-202 (205)
168 3l0i_B RAS-related protein RAB 99.8 4.1E-21 1.4E-25 155.4 -4.3 154 92-265 33-195 (199)
169 1r5b_A Eukaryotic peptide chai 99.8 1.8E-18 6.2E-23 157.5 11.5 153 92-257 43-243 (467)
170 3dpu_A RAB family protein; roc 99.8 5.3E-18 1.8E-22 157.1 12.8 154 90-266 39-208 (535)
171 2qag_A Septin-2, protein NEDD5 99.7 1E-17 3.6E-22 147.7 11.5 164 93-262 38-229 (361)
172 1nrj_B SR-beta, signal recogni 99.7 7.3E-18 2.5E-22 138.0 9.6 118 90-222 10-139 (218)
173 1udx_A The GTP-binding protein 99.7 2.6E-17 9.1E-22 147.1 13.0 159 92-266 157-325 (416)
174 2p67_A LAO/AO transport system 99.7 1.4E-17 4.7E-22 145.9 10.4 156 90-265 54-260 (341)
175 2h5e_A Peptide chain release f 99.7 3.9E-17 1.3E-21 150.6 13.6 114 93-219 14-150 (529)
176 3c5h_A Glucocorticoid receptor 99.7 9E-17 3.1E-21 135.2 13.6 86 174-265 162-254 (255)
177 1h65_A Chloroplast outer envel 99.7 1.1E-16 3.6E-21 135.8 13.6 123 92-219 39-170 (270)
178 3t34_A Dynamin-related protein 99.7 2.5E-17 8.7E-22 145.3 9.5 160 91-260 33-255 (360)
179 2xex_A Elongation factor G; GT 99.7 3.3E-17 1.1E-21 155.7 10.8 116 90-218 8-142 (693)
180 2qpt_A EH domain-containing pr 99.7 7.9E-17 2.7E-21 149.2 13.0 135 90-229 63-244 (550)
181 2dy1_A Elongation factor G; tr 99.7 2.2E-16 7.5E-21 149.5 15.3 113 91-216 8-139 (665)
182 3def_A T7I23.11 protein; chlor 99.7 6.5E-17 2.2E-21 136.6 10.5 122 92-218 36-166 (262)
183 2rdo_7 EF-G, elongation factor 99.7 3.5E-16 1.2E-20 148.8 16.6 115 91-218 9-149 (704)
184 1yrb_A ATP(GTP)binding protein 99.7 1.4E-16 4.6E-21 134.2 11.9 167 91-267 13-258 (262)
185 2f9l_A RAB11B, member RAS onco 99.7 2.9E-16 1E-20 126.8 12.7 156 92-265 5-167 (199)
186 1dar_A EF-G, elongation factor 99.7 1.9E-16 6.4E-21 150.5 12.7 115 91-218 11-144 (691)
187 2ged_A SR-beta, signal recogni 99.7 2.4E-16 8.2E-21 126.3 11.5 131 90-233 46-186 (193)
188 3vqt_A RF-3, peptide chain rel 99.7 2.9E-16 1E-20 145.3 13.3 124 93-230 32-178 (548)
189 2qag_C Septin-7; cell cycle, c 99.7 3.2E-16 1.1E-20 140.2 10.3 170 92-266 31-227 (418)
190 2qm8_A GTPase/ATPase; G protei 99.6 3.7E-16 1.3E-20 136.5 9.9 155 91-265 54-260 (337)
191 1oix_A RAS-related protein RAB 99.6 1.9E-15 6.4E-20 121.4 13.1 153 92-264 29-190 (191)
192 3r7w_B Gtpase2, GTP-binding pr 99.6 2.2E-15 7.7E-20 129.9 13.9 159 94-264 1-172 (331)
193 2qnr_A Septin-2, protein NEDD5 99.6 1.9E-15 6.5E-20 130.0 12.3 167 92-264 18-212 (301)
194 3j25_A Tetracycline resistance 99.6 2.4E-16 8.1E-21 148.6 6.7 159 93-265 3-238 (638)
195 2wsm_A Hydrogenase expression/ 99.6 5E-16 1.7E-20 127.3 7.7 150 91-265 29-213 (221)
196 1jal_A YCHF protein; nucleotid 99.6 2.3E-15 7.9E-20 131.9 10.5 86 93-186 3-108 (363)
197 2dby_A GTP-binding protein; GD 99.6 1.4E-15 4.8E-20 133.9 8.8 86 93-186 2-111 (368)
198 3h2y_A GTPase family protein; 99.6 1.4E-17 4.8E-22 147.2 -5.3 136 93-232 161-302 (368)
199 3ec1_A YQEH GTPase; atnos1, at 99.6 1.8E-17 6.2E-22 146.6 -5.2 152 93-254 163-319 (369)
200 1n0u_A EF-2, elongation factor 99.6 2E-15 6.9E-20 146.2 7.5 148 92-253 19-220 (842)
201 4fn5_A EF-G 1, elongation fact 99.5 3.7E-14 1.3E-18 135.3 12.9 115 91-218 12-152 (709)
202 2qag_B Septin-6, protein NEDD5 99.5 6.5E-14 2.2E-18 124.9 12.3 152 91-247 41-217 (427)
203 2hf9_A Probable hydrogenase ni 99.5 3.2E-13 1.1E-17 110.8 11.5 60 202-266 163-224 (226)
204 3sop_A Neuronal-specific septi 99.4 9.1E-13 3.1E-17 111.5 12.2 141 93-235 3-172 (270)
205 1tq4_A IIGP1, interferon-induc 99.4 3E-12 1E-16 114.2 14.9 166 92-267 69-254 (413)
206 2j37_W Signal recognition part 99.4 1.8E-12 6E-17 118.3 11.4 159 91-263 100-310 (504)
207 2ohf_A Protein OLA1, GTP-bindi 99.4 2.8E-13 9.6E-18 119.8 5.9 87 92-186 22-128 (396)
208 1puj_A YLQF, conserved hypothe 99.3 5.5E-12 1.9E-16 107.3 6.4 61 91-152 119-179 (282)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 4.5E-11 1.5E-15 105.9 5.1 89 91-186 19-127 (392)
210 3cnl_A YLQF, putative uncharac 99.1 5.2E-11 1.8E-15 100.2 4.6 59 93-152 100-158 (262)
211 1f5n_A Interferon-induced guan 99.0 2.9E-10 9.9E-15 105.4 5.9 58 91-151 37-104 (592)
212 3dm5_A SRP54, signal recogniti 99.0 1.4E-08 4.8E-13 90.9 15.3 145 92-256 100-281 (443)
213 3ohm_A Guanine nucleotide-bind 99.0 5.4E-09 1.8E-13 90.4 11.6 116 137-265 166-317 (327)
214 2v3c_C SRP54, signal recogniti 98.9 1.5E-09 5.3E-14 97.4 7.9 117 92-218 99-253 (432)
215 3l82_B F-box only protein 4; T 98.9 1.3E-08 4.4E-13 81.7 11.9 166 90-265 14-222 (227)
216 1puj_A YLQF, conserved hypothe 98.9 7E-09 2.4E-13 88.1 10.1 91 166-265 15-105 (282)
217 3kl4_A SRP54, signal recogniti 98.9 3.6E-08 1.2E-12 88.3 13.9 144 92-254 97-278 (433)
218 4fid_A G protein alpha subunit 98.8 9.3E-09 3.2E-13 89.2 9.3 116 137-265 160-327 (340)
219 3szr_A Interferon-induced GTP- 98.8 2.6E-08 8.8E-13 93.4 12.3 80 138-219 147-230 (608)
220 2yv5_A YJEQ protein; hydrolase 98.8 1.5E-08 5.2E-13 86.8 9.2 87 172-262 77-165 (302)
221 1u0l_A Probable GTPase ENGC; p 98.8 3.1E-08 1.1E-12 84.9 10.2 86 172-262 82-169 (301)
222 1zcb_A G alpha I/13; GTP-bindi 98.7 1E-08 3.4E-13 90.1 5.7 116 137-265 200-352 (362)
223 1cip_A Protein (guanine nucleo 98.7 7.3E-09 2.5E-13 90.6 4.6 116 137-265 192-343 (353)
224 3ec1_A YQEH GTPase; atnos1, at 98.7 4E-08 1.4E-12 86.6 9.2 89 175-265 72-161 (369)
225 3h2y_A GTPase family protein; 98.7 3.9E-08 1.3E-12 86.6 8.7 98 160-264 58-158 (368)
226 3l2o_B F-box only protein 4; s 98.6 3.3E-07 1.1E-11 77.1 9.9 101 155-265 198-307 (312)
227 3cnl_A YLQF, putative uncharac 98.6 5.5E-08 1.9E-12 81.7 5.2 82 170-263 17-98 (262)
228 1j8m_F SRP54, signal recogniti 98.6 3.6E-07 1.2E-11 78.0 10.3 147 92-257 98-282 (297)
229 2xtz_A Guanine nucleotide-bind 98.5 9.8E-08 3.3E-12 83.5 4.7 116 137-265 182-344 (354)
230 1azs_C GS-alpha; complex (lyas 98.4 3.7E-07 1.3E-11 81.0 6.6 116 137-265 216-384 (402)
231 3e70_C DPA, signal recognition 98.3 3.5E-06 1.2E-10 72.9 10.9 146 91-256 128-310 (328)
232 1t9h_A YLOQ, probable GTPase E 98.3 4E-07 1.4E-11 78.0 4.4 86 172-260 84-171 (307)
233 3q5d_A Atlastin-1; G protein, 98.2 3E-06 1E-10 76.1 8.5 25 91-115 66-90 (447)
234 2yhs_A FTSY, cell division pro 98.2 4.9E-05 1.7E-09 68.9 15.1 25 91-115 292-316 (503)
235 2rcn_A Probable GTPase ENGC; Y 98.2 8.9E-06 3E-10 71.0 9.6 83 172-260 128-213 (358)
236 1t9h_A YLOQ, probable GTPase E 98.1 7.3E-07 2.5E-11 76.4 2.7 57 92-150 173-236 (307)
237 1rj9_A FTSY, signal recognitio 98.1 6.9E-05 2.4E-09 64.0 13.7 24 92-115 102-125 (304)
238 2xxa_A Signal recognition part 98.1 2.4E-05 8.3E-10 70.1 10.8 117 91-218 99-255 (433)
239 1vma_A Cell division protein F 98.0 7.3E-05 2.5E-09 63.9 13.0 24 92-115 104-127 (306)
240 1zu4_A FTSY; GTPase, signal re 98.0 0.00023 7.8E-09 61.2 15.4 25 90-114 103-127 (320)
241 2yv5_A YJEQ protein; hydrolase 98.0 1.2E-05 4.3E-10 68.6 7.0 55 93-149 166-227 (302)
242 2rcn_A Probable GTPase ENGC; Y 97.9 6.4E-06 2.2E-10 71.9 4.3 58 93-150 216-280 (358)
243 1u0l_A Probable GTPase ENGC; p 97.9 1.2E-05 4.1E-10 68.7 5.0 57 93-150 170-233 (301)
244 2ffh_A Protein (FFH); SRP54, s 97.8 0.00034 1.2E-08 62.4 14.1 23 92-114 98-120 (425)
245 3ney_A 55 kDa erythrocyte memb 97.7 1.6E-05 5.6E-10 63.5 3.6 47 86-132 13-59 (197)
246 1ls1_A Signal recognition part 97.7 0.00058 2E-08 58.0 13.1 23 92-114 98-120 (295)
247 2px0_A Flagellar biosynthesis 97.6 0.00017 5.7E-09 61.4 7.7 23 92-114 105-127 (296)
248 4ido_A Atlastin-1; GTPase, GTP 97.3 0.00082 2.8E-08 60.2 8.3 24 90-113 65-88 (457)
249 1kgd_A CASK, peripheral plasma 97.3 0.00016 5.5E-09 56.6 3.4 23 93-115 6-28 (180)
250 1ye8_A Protein THEP1, hypothet 97.2 0.00019 6.5E-09 56.3 3.1 23 94-116 2-24 (178)
251 1lvg_A Guanylate kinase, GMP k 97.1 0.00019 6.5E-09 57.2 2.7 23 93-115 5-27 (198)
252 1ex7_A Guanylate kinase; subst 97.1 0.00019 6.4E-09 56.8 2.5 36 95-130 4-39 (186)
253 4dzz_A Plasmid partitioning pr 97.1 0.0049 1.7E-07 48.6 10.9 65 137-217 75-144 (206)
254 3tau_A Guanylate kinase, GMP k 97.1 0.00035 1.2E-08 56.0 3.7 25 92-116 8-32 (208)
255 3a00_A Guanylate kinase, GMP k 97.1 0.00022 7.6E-09 56.1 2.4 22 94-115 3-24 (186)
256 3tr0_A Guanylate kinase, GMP k 97.0 0.0004 1.4E-08 55.1 3.5 23 93-115 8-30 (205)
257 1znw_A Guanylate kinase, GMP k 97.0 0.00033 1.1E-08 56.1 3.0 23 93-115 21-43 (207)
258 3c8u_A Fructokinase; YP_612366 97.0 0.00042 1.5E-08 55.5 3.3 25 91-115 21-45 (208)
259 3tif_A Uncharacterized ABC tra 96.9 0.00044 1.5E-08 56.7 3.2 24 93-116 32-55 (235)
260 1zp6_A Hypothetical protein AT 96.9 0.0005 1.7E-08 53.9 3.4 24 92-115 9-32 (191)
261 1z6g_A Guanylate kinase; struc 96.9 0.0004 1.4E-08 56.2 2.8 23 93-115 24-46 (218)
262 1s96_A Guanylate kinase, GMP k 96.9 0.00053 1.8E-08 55.6 3.4 25 92-116 16-40 (219)
263 2pcj_A ABC transporter, lipopr 96.9 0.00052 1.8E-08 55.9 3.1 23 93-115 31-53 (224)
264 2onk_A Molybdate/tungstate ABC 96.8 0.00065 2.2E-08 55.9 3.2 22 94-115 26-47 (240)
265 2cbz_A Multidrug resistance-as 96.8 0.00065 2.2E-08 55.8 3.2 24 93-116 32-55 (237)
266 1np6_A Molybdopterin-guanine d 96.8 0.00075 2.6E-08 52.7 3.4 24 92-115 6-29 (174)
267 3asz_A Uridine kinase; cytidin 96.8 0.00065 2.2E-08 54.3 3.1 24 92-115 6-29 (211)
268 4gp7_A Metallophosphoesterase; 96.8 0.00066 2.3E-08 52.6 3.0 23 93-115 10-32 (171)
269 3gfo_A Cobalt import ATP-bindi 96.8 0.00066 2.2E-08 57.1 3.2 23 93-115 35-57 (275)
270 1htw_A HI0065; nucleotide-bind 96.8 0.0007 2.4E-08 52.0 3.0 23 93-115 34-56 (158)
271 1b0u_A Histidine permease; ABC 96.8 0.00069 2.3E-08 56.5 3.2 24 93-116 33-56 (262)
272 4g1u_C Hemin import ATP-bindin 96.8 0.00069 2.4E-08 56.6 3.2 23 93-115 38-60 (266)
273 1g6h_A High-affinity branched- 96.8 0.0007 2.4E-08 56.3 3.2 23 93-115 34-56 (257)
274 1mv5_A LMRA, multidrug resista 96.8 0.0007 2.4E-08 55.8 3.2 23 93-115 29-51 (243)
275 2ff7_A Alpha-hemolysin translo 96.8 0.00072 2.5E-08 55.9 3.2 24 93-116 36-59 (247)
276 1sgw_A Putative ABC transporte 96.8 0.0007 2.4E-08 54.7 2.9 22 94-115 37-58 (214)
277 2pze_A Cystic fibrosis transme 96.7 0.00075 2.6E-08 55.1 3.2 24 93-116 35-58 (229)
278 1ji0_A ABC transporter; ATP bi 96.7 0.00079 2.7E-08 55.4 3.2 23 94-116 34-56 (240)
279 2eyu_A Twitching motility prot 96.7 0.00077 2.6E-08 56.2 3.1 23 93-115 26-48 (261)
280 3b85_A Phosphate starvation-in 96.7 0.00067 2.3E-08 54.5 2.6 22 94-115 24-45 (208)
281 2olj_A Amino acid ABC transpor 96.7 0.00081 2.8E-08 56.1 3.2 24 93-116 51-74 (263)
282 2j41_A Guanylate kinase; GMP, 96.7 0.00099 3.4E-08 52.8 3.6 24 92-115 6-29 (207)
283 1vpl_A ABC transporter, ATP-bi 96.7 0.00084 2.9E-08 55.8 3.2 23 93-115 42-64 (256)
284 4eun_A Thermoresistant glucoki 96.7 0.00095 3.2E-08 53.0 3.4 24 92-115 29-52 (200)
285 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00087 3E-08 55.5 3.3 22 94-115 31-52 (250)
286 2ghi_A Transport protein; mult 96.7 0.00085 2.9E-08 55.9 3.2 23 93-115 47-69 (260)
287 2qi9_C Vitamin B12 import ATP- 96.7 0.00085 2.9E-08 55.5 3.2 23 94-116 28-50 (249)
288 1kag_A SKI, shikimate kinase I 96.7 0.00088 3E-08 51.6 3.0 23 93-115 5-27 (173)
289 2zu0_C Probable ATP-dependent 96.7 0.00092 3.1E-08 55.9 3.2 23 93-115 47-69 (267)
290 2ixe_A Antigen peptide transpo 96.7 0.0009 3.1E-08 56.1 3.2 24 93-116 46-69 (271)
291 2ihy_A ABC transporter, ATP-bi 96.6 0.00096 3.3E-08 56.2 3.2 24 93-116 48-71 (279)
292 1knq_A Gluconate kinase; ALFA/ 96.6 0.0012 4.1E-08 51.0 3.5 24 92-115 8-31 (175)
293 2v9p_A Replication protein E1; 96.6 0.0011 3.7E-08 56.5 3.5 24 92-115 126-149 (305)
294 2nq2_C Hypothetical ABC transp 96.6 0.00099 3.4E-08 55.2 3.1 23 94-116 33-55 (253)
295 2yz2_A Putative ABC transporte 96.6 0.001 3.5E-08 55.6 3.2 23 93-115 34-56 (266)
296 4b4t_L 26S protease subunit RP 96.6 0.0089 3E-07 53.4 9.3 23 93-115 216-238 (437)
297 2bdt_A BH3686; alpha-beta prot 96.6 0.0011 3.8E-08 52.0 3.0 22 94-115 4-25 (189)
298 2f1r_A Molybdopterin-guanine d 96.6 0.00055 1.9E-08 53.3 1.1 23 93-115 3-25 (171)
299 2qor_A Guanylate kinase; phosp 96.6 0.0011 3.9E-08 52.7 3.0 24 92-115 12-35 (204)
300 3lnc_A Guanylate kinase, GMP k 96.5 0.001 3.5E-08 54.1 2.6 24 92-115 27-51 (231)
301 2bbw_A Adenylate kinase 4, AK4 96.5 0.0016 5.3E-08 53.5 3.6 21 93-113 28-48 (246)
302 3nh6_A ATP-binding cassette SU 96.5 0.0008 2.7E-08 57.4 1.9 25 92-116 80-104 (306)
303 2i3b_A HCR-ntpase, human cance 96.5 0.0011 3.8E-08 52.4 2.6 22 94-115 3-24 (189)
304 2pjz_A Hypothetical protein ST 96.5 0.0013 4.6E-08 54.8 3.2 23 93-115 31-53 (263)
305 3uie_A Adenylyl-sulfate kinase 96.5 0.0015 5.1E-08 51.8 3.3 24 92-115 25-48 (200)
306 3lw7_A Adenylate kinase relate 96.5 0.0015 5E-08 50.1 3.2 20 93-112 2-21 (179)
307 3aez_A Pantothenate kinase; tr 96.5 0.0015 5E-08 56.0 3.3 26 90-115 88-113 (312)
308 1nij_A Hypothetical protein YJ 96.4 0.0011 3.9E-08 56.8 2.4 24 92-115 4-27 (318)
309 2p5t_B PEZT; postsegregational 96.4 0.013 4.5E-07 48.2 8.8 25 91-115 31-55 (253)
310 1cke_A CK, MSSA, protein (cyti 96.4 0.0016 5.6E-08 52.4 3.2 23 93-115 6-28 (227)
311 2bbs_A Cystic fibrosis transme 96.4 0.0015 5.2E-08 55.2 3.1 25 92-116 64-88 (290)
312 3kb2_A SPBC2 prophage-derived 96.4 0.0017 6E-08 49.7 3.1 22 94-115 3-24 (173)
313 3cwq_A Para family chromosome 96.4 0.01 3.5E-07 47.4 7.7 66 137-217 67-134 (209)
314 3jvv_A Twitching mobility prot 96.4 0.0015 5.3E-08 56.9 3.0 22 94-115 125-146 (356)
315 3tui_C Methionine import ATP-b 96.4 0.0018 6.1E-08 56.5 3.2 24 93-116 55-78 (366)
316 2jeo_A Uridine-cytidine kinase 96.4 0.0019 6.6E-08 53.0 3.3 24 92-115 25-48 (245)
317 4a74_A DNA repair and recombin 96.4 0.0017 5.9E-08 52.2 2.9 23 93-115 26-48 (231)
318 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0018 6.2E-08 56.4 3.2 24 93-116 31-54 (359)
319 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0016 5.5E-08 56.1 2.8 22 94-115 173-194 (330)
320 3ec2_A DNA replication protein 96.4 0.0016 5.6E-08 50.6 2.6 24 92-115 38-61 (180)
321 1xjc_A MOBB protein homolog; s 96.3 0.0022 7.5E-08 49.7 3.3 24 92-115 4-27 (169)
322 2kjq_A DNAA-related protein; s 96.3 0.0019 6.5E-08 48.9 2.9 24 92-115 36-59 (149)
323 2gza_A Type IV secretion syste 96.3 0.0017 5.7E-08 56.8 2.9 23 94-116 177-199 (361)
324 3vaa_A Shikimate kinase, SK; s 96.3 0.0023 7.9E-08 50.7 3.4 24 92-115 25-48 (199)
325 1z47_A CYSA, putative ABC-tran 96.3 0.0021 7E-08 56.0 3.3 23 94-116 43-65 (355)
326 3t61_A Gluconokinase; PSI-biol 96.3 0.0022 7.6E-08 50.8 3.2 23 93-115 19-41 (202)
327 1gvn_B Zeta; postsegregational 96.3 0.0057 1.9E-07 51.6 5.9 24 92-115 33-56 (287)
328 1sxj_A Activator 1 95 kDa subu 96.3 0.022 7.4E-07 52.1 10.2 24 92-115 77-100 (516)
329 1bif_A 6-phosphofructo-2-kinas 96.3 0.0022 7.6E-08 58.0 3.5 24 92-115 39-62 (469)
330 2if2_A Dephospho-COA kinase; a 96.3 0.0022 7.5E-08 50.9 3.0 22 93-114 2-23 (204)
331 4b4t_J 26S protease regulatory 96.3 0.017 5.7E-07 51.0 8.8 22 94-115 184-205 (405)
332 2yyz_A Sugar ABC transporter, 96.3 0.0022 7.6E-08 55.9 3.3 23 93-115 30-52 (359)
333 3rlf_A Maltose/maltodextrin im 96.3 0.0023 7.7E-08 56.2 3.2 23 94-116 31-53 (381)
334 2ehv_A Hypothetical protein PH 96.3 0.0023 7.9E-08 52.2 3.2 21 94-114 32-52 (251)
335 2qt1_A Nicotinamide riboside k 96.3 0.0027 9.3E-08 50.5 3.5 24 92-115 21-44 (207)
336 2it1_A 362AA long hypothetical 96.2 0.0023 7.9E-08 55.8 3.2 23 94-116 31-53 (362)
337 1jjv_A Dephospho-COA kinase; P 96.2 0.0024 8.2E-08 50.7 3.1 22 93-114 3-24 (206)
338 1y63_A LMAJ004144AAA protein; 96.2 0.0034 1.2E-07 49.0 4.0 25 91-115 9-33 (184)
339 1g29_1 MALK, maltose transport 96.2 0.0024 8.3E-08 55.9 3.3 23 94-116 31-53 (372)
340 2ewv_A Twitching motility prot 96.2 0.0022 7.6E-08 56.2 3.0 23 93-115 137-159 (372)
341 4e22_A Cytidylate kinase; P-lo 96.2 0.0032 1.1E-07 52.0 3.7 22 92-113 27-48 (252)
342 1v43_A Sugar-binding transport 96.2 0.0025 8.7E-08 55.8 3.2 24 93-116 38-61 (372)
343 3b9q_A Chloroplast SRP recepto 96.2 0.0047 1.6E-07 52.5 4.8 25 91-115 99-123 (302)
344 3te6_A Regulatory protein SIR3 96.2 0.037 1.3E-06 47.3 10.4 25 91-115 44-68 (318)
345 1rz3_A Hypothetical protein rb 96.2 0.0034 1.2E-07 49.8 3.6 25 91-115 21-45 (201)
346 1ly1_A Polynucleotide kinase; 96.1 0.003 1E-07 48.7 3.2 21 94-114 4-24 (181)
347 1sq5_A Pantothenate kinase; P- 96.1 0.003 1E-07 53.8 3.4 25 91-115 79-103 (308)
348 1lw7_A Transcriptional regulat 96.1 0.0021 7.1E-08 56.1 2.4 25 92-116 170-194 (365)
349 1p9r_A General secretion pathw 96.1 0.0026 8.9E-08 56.6 3.0 22 94-115 169-190 (418)
350 1qhx_A CPT, protein (chloramph 96.1 0.0038 1.3E-07 48.2 3.6 23 93-115 4-26 (178)
351 2jaq_A Deoxyguanosine kinase; 96.1 0.0031 1E-07 49.7 3.1 22 94-115 2-23 (205)
352 3zvl_A Bifunctional polynucleo 96.1 0.031 1.1E-06 49.6 9.9 25 91-115 257-281 (416)
353 2oap_1 GSPE-2, type II secreti 96.1 0.0027 9.2E-08 58.0 3.0 22 94-115 262-283 (511)
354 3tqc_A Pantothenate kinase; bi 96.1 0.0037 1.3E-07 53.6 3.6 26 90-115 90-115 (321)
355 2yvu_A Probable adenylyl-sulfa 96.1 0.0043 1.5E-07 48.4 3.7 25 91-115 12-36 (186)
356 3gd7_A Fusion complex of cysti 96.1 0.0031 1.1E-07 55.5 3.2 23 93-115 48-70 (390)
357 3d31_A Sulfate/molybdate ABC t 96.0 0.0021 7.3E-08 55.7 2.0 23 94-116 28-50 (348)
358 1odf_A YGR205W, hypothetical 3 96.0 0.0039 1.3E-07 52.7 3.6 25 91-115 30-54 (290)
359 2rhm_A Putative kinase; P-loop 96.0 0.004 1.4E-07 48.7 3.4 23 93-115 6-28 (193)
360 2vp4_A Deoxynucleoside kinase; 96.0 0.004 1.4E-07 50.6 3.5 25 91-115 19-43 (230)
361 3trf_A Shikimate kinase, SK; a 96.0 0.0041 1.4E-07 48.3 3.5 24 92-115 5-28 (185)
362 1kht_A Adenylate kinase; phosp 96.0 0.0041 1.4E-07 48.4 3.4 23 93-115 4-26 (192)
363 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0031 1.1E-07 56.9 3.0 25 91-115 137-161 (460)
364 1nks_A Adenylate kinase; therm 96.0 0.0035 1.2E-07 48.9 2.9 22 94-115 3-24 (194)
365 3end_A Light-independent proto 96.0 0.01 3.6E-07 50.2 5.9 21 92-112 41-61 (307)
366 1nn5_A Similar to deoxythymidy 95.9 0.005 1.7E-07 48.9 3.7 24 92-115 9-32 (215)
367 1ukz_A Uridylate kinase; trans 95.9 0.0062 2.1E-07 48.1 4.2 26 90-115 13-38 (203)
368 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.07 2.4E-06 43.5 10.7 24 92-115 39-62 (262)
369 4b4t_I 26S protease regulatory 95.9 0.03 1E-06 49.7 8.8 23 93-115 217-239 (437)
370 2x8a_A Nuclear valosin-contain 95.9 0.0036 1.2E-07 52.4 2.8 21 95-115 47-67 (274)
371 2og2_A Putative signal recogni 95.9 0.0069 2.4E-07 52.7 4.7 25 91-115 156-180 (359)
372 1oxx_K GLCV, glucose, ABC tran 95.9 0.0021 7E-08 56.0 1.3 23 93-115 32-54 (353)
373 2v54_A DTMP kinase, thymidylat 95.9 0.0055 1.9E-07 48.3 3.7 24 92-115 4-27 (204)
374 2c95_A Adenylate kinase 1; tra 95.9 0.0056 1.9E-07 47.9 3.5 24 92-115 9-32 (196)
375 3iij_A Coilin-interacting nucl 95.9 0.0049 1.7E-07 47.8 3.2 24 92-115 11-34 (180)
376 1ixz_A ATP-dependent metallopr 95.8 0.0042 1.4E-07 51.1 2.8 22 94-115 51-72 (254)
377 3cm0_A Adenylate kinase; ATP-b 95.8 0.0051 1.8E-07 47.8 3.2 23 93-115 5-27 (186)
378 2cdn_A Adenylate kinase; phosp 95.8 0.007 2.4E-07 47.8 4.0 24 92-115 20-43 (201)
379 3dl0_A Adenylate kinase; phosp 95.8 0.0045 1.5E-07 49.5 2.8 22 94-115 2-23 (216)
380 3t15_A Ribulose bisphosphate c 95.8 0.018 6.2E-07 48.5 6.7 23 93-115 37-59 (293)
381 3kta_A Chromosome segregation 95.8 0.0052 1.8E-07 47.7 3.1 21 94-114 28-48 (182)
382 2plr_A DTMP kinase, probable t 95.8 0.0056 1.9E-07 48.5 3.4 23 93-115 5-27 (213)
383 3fb4_A Adenylate kinase; psych 95.8 0.0055 1.9E-07 48.9 3.3 22 94-115 2-23 (216)
384 1qf9_A UMP/CMP kinase, protein 95.8 0.0073 2.5E-07 47.0 3.9 24 92-115 6-29 (194)
385 1uf9_A TT1252 protein; P-loop, 95.8 0.0058 2E-07 48.1 3.3 24 92-115 8-31 (203)
386 3exa_A TRNA delta(2)-isopenten 95.8 0.014 4.7E-07 49.8 5.7 24 93-116 4-27 (322)
387 1d2n_A N-ethylmaleimide-sensit 95.8 0.08 2.7E-06 43.7 10.5 24 92-115 64-87 (272)
388 1via_A Shikimate kinase; struc 95.7 0.0048 1.7E-07 47.6 2.7 23 93-115 5-27 (175)
389 2wwf_A Thymidilate kinase, put 95.7 0.007 2.4E-07 48.0 3.6 24 92-115 10-33 (212)
390 1aky_A Adenylate kinase; ATP:A 95.7 0.0069 2.4E-07 48.6 3.6 24 92-115 4-27 (220)
391 2pez_A Bifunctional 3'-phospho 95.7 0.0063 2.2E-07 47.1 3.2 24 92-115 5-28 (179)
392 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0055 1.9E-07 56.4 3.2 25 92-116 47-71 (538)
393 1zd8_A GTP:AMP phosphotransfer 95.7 0.0065 2.2E-07 49.1 3.3 24 92-115 7-30 (227)
394 4b4t_K 26S protease regulatory 95.7 0.012 4.1E-07 52.4 5.3 22 94-115 208-229 (428)
395 3a8t_A Adenylate isopentenyltr 95.7 0.019 6.3E-07 49.5 6.2 25 93-117 41-65 (339)
396 3foz_A TRNA delta(2)-isopenten 95.7 0.011 3.9E-07 50.2 4.8 24 93-116 11-34 (316)
397 1zak_A Adenylate kinase; ATP:A 95.6 0.0064 2.2E-07 48.9 3.2 23 93-115 6-28 (222)
398 3b9p_A CG5977-PA, isoform A; A 95.6 0.024 8.4E-07 47.5 6.9 24 92-115 54-77 (297)
399 2iyv_A Shikimate kinase, SK; t 95.6 0.006 2.1E-07 47.4 2.9 23 93-115 3-25 (184)
400 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.0063 2.1E-07 48.8 3.0 22 94-115 25-46 (235)
401 1tev_A UMP-CMP kinase; ploop, 95.6 0.0069 2.4E-07 47.2 3.2 23 93-115 4-26 (196)
402 3sr0_A Adenylate kinase; phosp 95.6 0.0051 1.7E-07 49.3 2.4 23 94-116 2-24 (206)
403 1in4_A RUVB, holliday junction 95.6 0.0066 2.2E-07 52.2 3.3 23 93-115 52-74 (334)
404 3euj_A Chromosome partition pr 95.6 0.0058 2E-07 55.3 3.0 22 94-115 31-52 (483)
405 3ozx_A RNAse L inhibitor; ATP 95.6 0.006 2.1E-07 56.1 3.2 24 93-116 26-49 (538)
406 3h4m_A Proteasome-activating n 95.6 0.021 7.2E-07 47.5 6.3 24 92-115 51-74 (285)
407 3umf_A Adenylate kinase; rossm 95.6 0.0064 2.2E-07 49.1 2.9 24 93-116 30-53 (217)
408 4a1f_A DNAB helicase, replicat 95.6 0.12 3.9E-06 44.6 10.9 21 94-114 48-68 (338)
409 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0074 2.5E-07 50.0 3.4 24 92-115 4-27 (260)
410 1gtv_A TMK, thymidylate kinase 95.6 0.0029 1E-07 50.4 0.8 22 94-115 2-23 (214)
411 2bwj_A Adenylate kinase 5; pho 95.6 0.0078 2.7E-07 47.2 3.3 23 93-115 13-35 (199)
412 1iy2_A ATP-dependent metallopr 95.5 0.0061 2.1E-07 50.9 2.8 22 94-115 75-96 (278)
413 4b4t_M 26S protease regulatory 95.5 0.012 4.1E-07 52.5 4.8 23 93-115 216-238 (434)
414 4b4t_H 26S protease regulatory 95.5 0.032 1.1E-06 50.1 7.4 23 93-115 244-266 (467)
415 1vht_A Dephospho-COA kinase; s 95.5 0.0081 2.8E-07 48.1 3.3 22 93-114 5-26 (218)
416 3b60_A Lipid A export ATP-bind 95.5 0.0077 2.6E-07 55.9 3.6 25 92-116 369-393 (582)
417 3eph_A TRNA isopentenyltransfe 95.5 0.016 5.6E-07 51.1 5.3 23 93-115 3-25 (409)
418 2pt5_A Shikimate kinase, SK; a 95.5 0.0085 2.9E-07 45.7 3.2 22 94-115 2-23 (168)
419 3nwj_A ATSK2; P loop, shikimat 95.5 0.0072 2.5E-07 49.9 2.9 23 93-115 49-71 (250)
420 3j16_B RLI1P; ribosome recycli 95.5 0.0074 2.5E-07 56.3 3.2 25 92-116 103-127 (608)
421 1e4v_A Adenylate kinase; trans 95.5 0.0085 2.9E-07 47.9 3.2 22 94-115 2-23 (214)
422 1cr0_A DNA primase/helicase; R 95.4 0.0073 2.5E-07 50.8 2.9 22 94-115 37-58 (296)
423 2ze6_A Isopentenyl transferase 95.4 0.0074 2.5E-07 49.8 2.9 22 94-115 3-24 (253)
424 3b5x_A Lipid A export ATP-bind 95.4 0.0086 2.9E-07 55.6 3.6 25 92-116 369-393 (582)
425 3tlx_A Adenylate kinase 2; str 95.4 0.0094 3.2E-07 48.8 3.5 24 92-115 29-52 (243)
426 1jbk_A CLPB protein; beta barr 95.4 0.0097 3.3E-07 45.8 3.4 23 93-115 44-66 (195)
427 2pbr_A DTMP kinase, thymidylat 95.4 0.0092 3.2E-07 46.5 3.3 22 94-115 2-23 (195)
428 2z0h_A DTMP kinase, thymidylat 95.4 0.0082 2.8E-07 47.0 3.0 22 94-115 2-23 (197)
429 2yl4_A ATP-binding cassette SU 95.4 0.0075 2.6E-07 56.2 3.1 25 92-116 370-394 (595)
430 1e6c_A Shikimate kinase; phosp 95.4 0.0086 2.9E-07 45.8 3.0 23 93-115 3-25 (173)
431 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0077 2.6E-07 52.6 2.9 20 94-113 25-44 (365)
432 3qf4_B Uncharacterized ABC tra 95.4 0.0082 2.8E-07 55.9 3.3 25 92-116 381-405 (598)
433 3bk7_A ABC transporter ATP-bin 95.4 0.0082 2.8E-07 56.0 3.2 25 92-116 117-141 (607)
434 2obl_A ESCN; ATPase, hydrolase 95.4 0.008 2.8E-07 52.1 2.9 24 92-115 71-94 (347)
435 1f2t_A RAD50 ABC-ATPase; DNA d 95.3 0.0093 3.2E-07 45.0 2.9 20 94-113 25-44 (149)
436 4a82_A Cystic fibrosis transme 95.3 0.0072 2.5E-07 56.1 2.7 25 92-116 367-391 (578)
437 2vli_A Antibiotic resistance p 95.3 0.008 2.7E-07 46.5 2.6 23 93-115 6-28 (183)
438 1m7g_A Adenylylsulfate kinase; 95.3 0.01 3.5E-07 47.3 3.3 24 92-115 25-48 (211)
439 1lv7_A FTSH; alpha/beta domain 95.3 0.019 6.5E-07 47.1 5.0 23 93-115 46-68 (257)
440 3crm_A TRNA delta(2)-isopenten 95.3 0.012 4E-07 50.5 3.7 24 93-116 6-29 (323)
441 3be4_A Adenylate kinase; malar 95.3 0.0087 3E-07 48.0 2.8 23 93-115 6-28 (217)
442 1uj2_A Uridine-cytidine kinase 95.3 0.011 3.7E-07 48.7 3.3 24 92-115 22-45 (252)
443 3ozx_A RNAse L inhibitor; ATP 95.3 0.0093 3.2E-07 54.8 3.2 23 93-115 295-317 (538)
444 3u61_B DNA polymerase accessor 95.2 0.33 1.1E-05 41.0 12.7 22 94-115 50-71 (324)
445 1svm_A Large T antigen; AAA+ f 95.2 0.012 4E-07 51.7 3.5 23 93-115 170-192 (377)
446 3r20_A Cytidylate kinase; stru 95.2 0.012 4E-07 48.1 3.3 23 93-115 10-32 (233)
447 3qf4_A ABC transporter, ATP-bi 95.2 0.0094 3.2E-07 55.4 3.0 25 92-116 369-393 (587)
448 1yqt_A RNAse L inhibitor; ATP- 95.2 0.011 3.6E-07 54.5 3.2 24 93-116 313-336 (538)
449 2xb4_A Adenylate kinase; ATP-b 95.1 0.012 4.2E-07 47.4 3.3 22 94-115 2-23 (223)
450 4eaq_A DTMP kinase, thymidylat 95.1 0.013 4.3E-07 47.7 3.3 24 92-115 26-49 (229)
451 1ak2_A Adenylate kinase isoenz 95.1 0.015 5.1E-07 47.2 3.7 24 92-115 16-39 (233)
452 1n0w_A DNA repair protein RAD5 95.1 0.011 3.9E-07 47.7 3.0 23 93-115 25-47 (243)
453 2cvh_A DNA repair and recombin 95.1 0.014 4.9E-07 46.3 3.5 22 93-114 21-42 (220)
454 3pvs_A Replication-associated 95.1 0.1 3.4E-06 46.8 9.3 23 93-115 51-73 (447)
455 3bos_A Putative DNA replicatio 95.1 0.014 4.7E-07 46.9 3.4 24 92-115 52-75 (242)
456 2dpy_A FLII, flagellum-specifi 95.1 0.011 3.7E-07 53.0 2.9 24 92-115 157-180 (438)
457 3bk7_A ABC transporter ATP-bin 95.0 0.012 4.1E-07 54.9 3.2 24 93-116 383-406 (607)
458 3ake_A Cytidylate kinase; CMP 95.0 0.014 4.6E-07 46.1 3.1 23 93-115 3-25 (208)
459 2w58_A DNAI, primosome compone 95.0 0.015 5.2E-07 45.8 3.3 23 93-115 55-77 (202)
460 1zuh_A Shikimate kinase; alpha 95.0 0.016 5.5E-07 44.2 3.3 24 92-115 7-30 (168)
461 1sxj_E Activator 1 40 kDa subu 94.9 0.015 5E-07 50.1 3.3 24 92-115 36-59 (354)
462 2p65_A Hypothetical protein PF 94.9 0.013 4.3E-07 45.1 2.5 23 93-115 44-66 (187)
463 3j16_B RLI1P; ribosome recycli 94.8 0.015 5E-07 54.3 3.2 23 94-116 380-402 (608)
464 2f6r_A COA synthase, bifunctio 94.8 0.017 5.9E-07 48.4 3.4 23 92-114 75-97 (281)
465 1q3t_A Cytidylate kinase; nucl 94.8 0.019 6.6E-07 46.6 3.6 25 91-115 15-39 (236)
466 4f4c_A Multidrug resistance pr 94.8 0.013 4.3E-07 59.7 2.9 25 92-116 1105-1129(1321)
467 1tue_A Replication protein E1; 94.7 0.014 4.9E-07 46.6 2.4 22 94-115 60-81 (212)
468 1qhl_A Protein (cell division 94.7 0.0023 8E-08 52.1 -2.2 21 95-115 30-50 (227)
469 3vfd_A Spastin; ATPase, microt 94.7 0.055 1.9E-06 47.4 6.5 24 92-115 148-171 (389)
470 2grj_A Dephospho-COA kinase; T 94.7 0.019 6.5E-07 45.3 3.1 24 92-115 12-35 (192)
471 2qp9_X Vacuolar protein sortin 94.7 0.024 8.1E-07 49.2 4.0 23 93-115 85-107 (355)
472 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.14 4.9E-06 43.7 8.7 21 94-114 125-145 (331)
473 1sxj_C Activator 1 40 kDa subu 94.6 0.019 6.4E-07 49.4 3.2 24 92-115 46-69 (340)
474 2b8t_A Thymidine kinase; deoxy 94.6 0.045 1.6E-06 44.2 5.3 41 177-217 90-130 (223)
475 1nlf_A Regulatory protein REPA 94.6 0.018 6.2E-07 48.0 2.9 23 93-115 31-53 (279)
476 1fnn_A CDC6P, cell division co 94.6 0.019 6.4E-07 49.9 3.1 23 93-115 45-67 (389)
477 2chg_A Replication factor C sm 94.6 0.022 7.4E-07 44.9 3.3 22 94-115 40-61 (226)
478 3cf2_A TER ATPase, transitiona 94.6 0.15 5E-06 49.1 9.4 24 92-115 238-261 (806)
479 2qmh_A HPR kinase/phosphorylas 94.5 0.025 8.7E-07 44.9 3.3 23 93-115 35-57 (205)
480 1qvr_A CLPB protein; coiled co 94.5 0.08 2.7E-06 51.4 7.6 23 93-115 192-214 (854)
481 3d8b_A Fidgetin-like protein 1 94.5 0.064 2.2E-06 46.4 6.3 24 92-115 117-140 (357)
482 3syl_A Protein CBBX; photosynt 94.4 0.027 9.3E-07 47.4 3.7 25 91-115 66-90 (309)
483 3qks_A DNA double-strand break 94.4 0.023 7.7E-07 45.2 2.9 21 93-113 24-44 (203)
484 3pxg_A Negative regulator of g 94.4 0.04 1.4E-06 49.7 4.9 23 93-115 202-224 (468)
485 1ltq_A Polynucleotide kinase; 94.3 0.024 8.2E-07 47.7 3.2 21 94-114 4-24 (301)
486 2ga8_A Hypothetical 39.9 kDa p 94.3 0.03 1E-06 48.5 3.8 25 91-115 23-47 (359)
487 3n70_A Transport activator; si 94.3 0.049 1.7E-06 40.5 4.6 23 93-115 25-47 (145)
488 1a7j_A Phosphoribulokinase; tr 94.3 0.018 6.3E-07 48.5 2.4 24 92-115 5-28 (290)
489 4fcw_A Chaperone protein CLPB; 94.2 0.052 1.8E-06 45.6 5.1 23 93-115 48-70 (311)
490 4f4c_A Multidrug resistance pr 94.2 0.025 8.7E-07 57.5 3.5 25 92-116 444-468 (1321)
491 1l8q_A Chromosomal replication 94.2 0.027 9.1E-07 48.0 3.1 23 93-115 38-60 (324)
492 2iw3_A Elongation factor 3A; a 94.2 0.014 4.8E-07 57.1 1.5 23 93-115 700-722 (986)
493 1njg_A DNA polymerase III subu 94.1 0.029 9.8E-07 44.8 3.1 23 93-115 46-68 (250)
494 3cr8_A Sulfate adenylyltranfer 94.1 0.016 5.5E-07 53.4 1.7 24 92-115 369-392 (552)
495 1r6b_X CLPA protein; AAA+, N-t 94.0 0.2 6.9E-06 47.8 9.3 24 92-115 207-230 (758)
496 4aby_A DNA repair protein RECN 94.0 0.0095 3.3E-07 52.6 0.1 21 94-114 62-82 (415)
497 3cf0_A Transitional endoplasmi 94.0 0.034 1.2E-06 46.9 3.5 23 93-115 50-72 (301)
498 3ux8_A Excinuclease ABC, A sub 94.0 0.02 6.8E-07 54.1 2.2 21 93-113 349-369 (670)
499 1p5z_B DCK, deoxycytidine kina 94.0 0.024 8.4E-07 46.8 2.5 24 92-115 24-47 (263)
500 2qby_A CDC6 homolog 1, cell di 94.0 0.03 1E-06 48.3 3.2 23 93-115 46-68 (386)
No 1
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.96 E-value=1e-28 Score=203.55 Aligned_cols=181 Identities=32% Similarity=0.486 Sum_probs=145.8
Q ss_pred CCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeC----CcEEEEcCCCCCCcchhHHHHHHH
Q 024325 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAW 161 (269)
Q Consensus 86 ~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~----~~~~lvDtpG~~~~~~~~~~~~~~ 161 (269)
..+....++|+++|.+|+|||||+|+|++......+++.+++|.+..+.... ..+.+|||||+..........+.|
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 3444567899999999999999999999984356889999999998766544 789999999987764444445667
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc----CC
Q 024325 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NS 237 (269)
Q Consensus 162 ~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~ 237 (269)
..+...|+.....+|++++|+|+..++...+..++..+...++|+++|+||+|+....+.......+.+.+... ..
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 77888888888889999999999988887788888888888999999999999998766655555555544432 12
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
...+++++||++|.|+++|+++|.+.+..
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 35789999999999999999999987754
No 2
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=5.6e-28 Score=194.44 Aligned_cols=179 Identities=34% Similarity=0.555 Sum_probs=146.4
Q ss_pred cCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325 84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (269)
Q Consensus 84 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 163 (269)
....+....++|+++|.+|+|||||+|+|++. .....++.+++|.+..+...+..+.+|||||+..........+.+..
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH
Confidence 34455566789999999999999999999998 46778888999999888877889999999998765444444556677
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+...|+.....+|++++|+|+.......+..++.++...+.|+++|+||+|+.++.+.....+.+.+..... ...+++
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~ 171 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY--GEYTII 171 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS--CCSCEE
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc--CCCceE
Confidence 778888887778999999999877777777888888888999999999999998776666666665555432 246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999998775
No 3
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=7.9e-28 Score=193.96 Aligned_cols=178 Identities=33% Similarity=0.557 Sum_probs=132.6
Q ss_pred CCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 86 ~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..+....++|+++|.+|+|||||+|+|++......+++.+++|.+..+...+..+.+|||||++.........+.+..+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34445678999999999999999999998732456778889999888777778899999999876544444445566777
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
..|+.....+|++++|+|+..+....+..++.++...+.|+++|+||+|+.+..+.......+.+.+.. ....+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 174 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI--DPEDELILF 174 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC--CTTSEEEEC
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcc--cCCCceEEE
Confidence 777777666799999999988777777778888888889999999999999876665555555543321 225689999
Q ss_pred eCCCCCCHHHHHHHHHHhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~ 265 (269)
||++|.|+++++++|.+.++
T Consensus 175 Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred EccCCCCHHHHHHHHHHHhc
Confidence 99999999999999988764
No 4
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.96 E-value=6.3e-29 Score=226.26 Aligned_cols=236 Identities=20% Similarity=0.188 Sum_probs=133.8
Q ss_pred hhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCC
Q 024325 8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSF 87 (269)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (269)
+..|+..+++...+.+......| +.+++...+ .+|+.+|||+|++++............+..............+..
T Consensus 154 t~~~~~~a~~~l~G~ls~~i~~l--r~~L~~~~a-~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~ 230 (476)
T 3gee_A 154 TESAYRTAVSQMKGDLSVRLGGL--REQLIRSCA-LIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV 230 (476)
T ss_dssp SHHHHHHHHHHHHTHHHHHHHHH--HTHHHHHHH-TTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCcHHHHHHHH--HHHHHHHHH-HhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 44455556666666677777777 556777666 899999999988776544332222222221111122111111000
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHH-
Q 024325 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEE- 163 (269)
Q Consensus 88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~- 163 (269)
...++|+++|+||+|||||+|+|++. ..+++++++|||++... ...+..+.+|||||+.... ..+..
T Consensus 231 --r~~~kV~ivG~~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~------~~ve~~ 301 (476)
T 3gee_A 231 --SEGVSTVIAGKPNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG------EEIEHE 301 (476)
T ss_dssp --HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------
T ss_pred --cCCCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch------hHHHHH
Confidence 13468999999999999999999998 55789999999999743 2346789999999986521 11111
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCc----chHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325 164 LVKEYVSTRVSLKRVCLLIDTKWGVKP----RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (269)
Q Consensus 164 ~~~~~~~~~~~~d~vl~vid~~~~~~~----~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
.+.........+|++++|+|++.+... ....++..+. ++|+++|+||+|+........ +.+.+. . .
T Consensus 302 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~-----~ 371 (476)
T 3gee_A 302 GIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG-T-----G 371 (476)
T ss_dssp ------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH-H-----T
T ss_pred HHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc-C-----C
Confidence 123344556679999999999977665 3334444433 689999999999987654422 222221 0 2
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+++++||++|+|+++|+++|.+.+.
T Consensus 372 ~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999988775
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.2e-25 Score=194.51 Aligned_cols=167 Identities=23% Similarity=0.286 Sum_probs=126.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---Ee-CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...|+++|.+|||||||+|+|++. ....+++.+++|++.... .. +..+.+|||||+..........+.+......
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 457999999999999999999998 677789999999886432 23 6679999999997653222233222222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHH-HHHHHhhCCcEEEEEecCCCC-CchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~-~~~l~~~~~p~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
....+|++++|+|++.+....+..+ ++.+...+.|+++|+||+|+. +..........+.+.+ ....+++++
T Consensus 89 ---~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~----~~~~~i~~v 161 (308)
T 3iev_A 89 ---SLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH----PELTEIVPI 161 (308)
T ss_dssp ---HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC----TTCCCEEEC
T ss_pred ---HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc----cCCCeEEEE
Confidence 3334999999999998777777776 777877889999999999998 5555554444444332 124789999
Q ss_pred eCCCCCCHHHHHHHHHHhhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~~ 266 (269)
||++|.|+++|+++|.+.+..
T Consensus 162 SA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSCB
T ss_pred eCCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999987743
No 6
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.93 E-value=3.2e-27 Score=214.26 Aligned_cols=234 Identities=21% Similarity=0.218 Sum_probs=144.8
Q ss_pred hhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCCC
Q 024325 9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFP 88 (269)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (269)
..|+-.+++...+.+......| +.+++.... .+|+.+||++ ++++......+.....+.................
T Consensus 147 ~~~~~~a~~~l~g~~~~~~~~~--r~~l~~~~a-~iEa~iDf~e-d~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~- 221 (462)
T 3geh_A 147 PQAAQTALAGLQGKLAHPIRQL--RANCLDILA-EIEARIDFEE-DLPPLDDEAIISDIENIAAEISQLLATKDKGELL- 221 (462)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHH--HHHHHHHHH-HHHHHTTSSS-SSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH-
T ss_pred HHHHHHHHHHhchhHHHHHHHH--HHHHHHHHH-HHHhhccccc-cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-
Confidence 3444455555556666666666 556666666 7889999987 5555443221111111111111111111000000
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHH-H
Q 024325 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-L 164 (269)
Q Consensus 89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~-~ 164 (269)
...++|+++|+||+|||||+|+|++. ...++++.++||++.. ....+..+.+|||||+.+... .+.. .
T Consensus 222 -r~~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~------~ve~~g 293 (462)
T 3geh_A 222 -RTGLKVAIVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD------QVEKIG 293 (462)
T ss_dssp -HHCEEEEEEECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------
T ss_pred -cCCCEEEEEcCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh------HHHHHH
Confidence 12468999999999999999999997 5577899999999873 333477899999999855311 1111 1
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+.........+|++++|+|++.+....+..+++.+. ..|+++|+||+|+.+...... ...+ ....++++
T Consensus 294 i~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~~--------~~~~-~~~~~~i~ 362 (462)
T 3geh_A 294 VERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLITS--------LEYP-ENITQIVH 362 (462)
T ss_dssp -----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGSTT--------CCCC-TTCCCEEE
T ss_pred HHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhHH--------HHHh-ccCCcEEE
Confidence 233445566799999999999877777767766664 379999999999987643220 0000 12468999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+||++|.|+++|+++|.+.+..
T Consensus 363 iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988754
No 7
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.93 E-value=5.4e-27 Score=213.70 Aligned_cols=155 Identities=22% Similarity=0.336 Sum_probs=113.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCC-Ccchh---HHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYG-FAYAK---EEVKDAWEEL 164 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~-~~~~~---~~~~~~~~~~ 164 (269)
.++|+++|+||+|||||+|+|++. ...+++++|+||+|.... ..+..+.+|||||+. ..... ..+...+..+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 468999999999999999999998 557899999999987422 246789999999997 43211 1111222221
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
..+|++++|+|++.+....+.++++.+ .++|+++|+||+|+....... .+.+.. ....++++
T Consensus 322 --------~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~----~~~~~~----~~~~~~i~ 383 (482)
T 1xzp_A 322 --------EKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEE----EIKNKL----GTDRHMVK 383 (482)
T ss_dssp --------HHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHH----HHHHHH----TCSTTEEE
T ss_pred --------hcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHH----HHHHHh----cCCCcEEE
Confidence 229999999999877666666666655 378999999999997642222 122211 12368999
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||++|+|+++|+++|.+.+.
T Consensus 384 iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 384 ISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEGGGTCCHHHHHHHHHHHTH
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999988643
No 8
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.93 E-value=2.8e-25 Score=196.08 Aligned_cols=238 Identities=18% Similarity=0.119 Sum_probs=126.1
Q ss_pred hcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhh----hccCCCCCC
Q 024325 15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAA----KVSSSFPAP 90 (269)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~ 90 (269)
++|++.+.+.|..++| +.|..+.... .+++..+|++. ..+.+++.+..++.....++.... ..+..+.+.
T Consensus 104 ~~q~~la~l~~~~~rl-~~~~~l~~~~--~~i~~~g~ge~---~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~ 177 (364)
T 2qtf_A 104 KMQIELARLKYELPII-KETYTKSKIG--EQQGPLGAGTY---GVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRN 177 (364)
T ss_dssp HHHHHHHHHHHHHHHH-HHC--------------------------CHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred hHHHHHHHHhhhchhh-hhhhHHHHhc--CCCCcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4799999999999999 6664433333 33334445543 223335556665543332222211 122233345
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
+.+.|+++|++|||||||+|+|++.. ..+++.+++|.|.... ..+..+.++||||+......+.+ +.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lv-e~f~~---- 250 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIV-DAFFV---- 250 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGH-HHHHH----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHH-HHHHH----
Confidence 66779999999999999999999983 4678888999876332 23567899999997543222211 12222
Q ss_pred HHhcccccceEEEEEeCCCCCCcch---HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.......+|++++|+|++++..... ..+.+.+.. .+.|+++|+||+|+.+... ......+............+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL-YKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchH-HHHHHHHHHHHHHhcCCCCc
Confidence 2233455999999999875421111 112333333 4689999999999987541 11111221111211011246
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++|.|+++|+++|.+.+..
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHhcc
Confidence 8999999999999999999887654
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=5e-25 Score=189.96 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
..|+++|.||+|||||+|+|++. ..+.+++.|+||++... ...+..+.+|||||+..+.. .+.+ .+.....
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~---~~~~~~~ 81 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGE---FMDQEVY 81 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHH---HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHH---HHHHHHH
Confidence 47999999999999999999998 66778899999987532 22366899999999976422 2222 2333444
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
.....+|++++|+|++.++...+..+++.+... +.|+++|+||+|+..... ... .+. .+ ....+++++|
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~---~~~----~~-~~~~~~~~iS 153 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMK---AYH----EL-LPEAEPRMLS 153 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHH---HHH----HT-STTSEEEECC
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHH---HHH----Hh-cCcCcEEEEe
Confidence 455669999999999887777777777778776 899999999999987644 222 111 11 1235789999
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q 024325 247 SKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~ 265 (269)
|++|.|+++|+++|.+.+.
T Consensus 154 A~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 154 ALDERQVAELKADLLALMP 172 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHhcc
Confidence 9999999999999987653
No 10
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=6e-25 Score=185.31 Aligned_cols=160 Identities=22% Similarity=0.197 Sum_probs=113.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
|+|+++|.+|+|||||+|+|++.. ..+++.||+|.+.... ..+..+.+|||||+...............+...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 689999999999999999999984 6788999999876433 23567999999998654321000011123344444
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.. ..+|++++|+|++. ......+..++...++|+++|+||+|+............+.+.+ +.|++++||++
T Consensus 80 ~~-~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~ 150 (256)
T 3iby_A 80 ID-LEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL------GCSVIPIQAHK 150 (256)
T ss_dssp HH-SCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH------CSCEEECBGGG
T ss_pred hh-CCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc------CCCEEEEECCC
Confidence 22 34999999999975 23345666777777899999999999864432211122233322 47999999999
Q ss_pred CCCHHHHHHHHHHh
Q 024325 250 GAGIRSLRTVLSKI 263 (269)
Q Consensus 250 g~gi~~L~~~i~~~ 263 (269)
|.|+++|+++|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 11
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=8.3e-24 Score=164.78 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
++|+++|.+|+|||||+|+|++. ....+++.+++|.+..... .+..+.+|||||........ ..+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------~~~~~~~~ 74 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE------KKIQEKVD 74 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCC------HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH------HHHHHHHH
Confidence 68999999999999999999988 4455677888887764332 35679999999986531100 11112222
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.....+|++++|+|+..+....+..+..++...+.|+++|+||+|+....+. +.+.. .. ...+++++||++
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~------~~~~~-~~--~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 75 RALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELY------LGPLY-GL--GFGDPIPTSSEH 145 (161)
T ss_dssp HHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGG------CGGGG-GG--SSCSCEECBTTT
T ss_pred HHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHh------HHHHH-hC--CCCCeEEEeccc
Confidence 3344599999999998877777777778887788999999999999765211 11111 11 123789999999
Q ss_pred CCCHHHHHHHHHHhh
Q 024325 250 GAGIRSLRTVLSKIA 264 (269)
Q Consensus 250 g~gi~~L~~~i~~~~ 264 (269)
|.|+++++++|.+.+
T Consensus 146 ~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 146 ARGLEELLEAIWERL 160 (161)
T ss_dssp TBSHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHhC
Confidence 999999999998765
No 12
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=3.4e-23 Score=171.45 Aligned_cols=170 Identities=16% Similarity=0.145 Sum_probs=107.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...++|+++|.+|+|||||+|+|++. .. .+++.+++|.+..... .+..+.+|||||+......+.....+..+ .
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA-NV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI-T 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT-CE-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-CC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH-H
Confidence 45689999999999999999999998 33 3677888888876543 35679999999985432111100001111 1
Q ss_pred HHHhcccccceEEEEEeCCCCCCcc---hHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHH-HHHHHHHHHhcCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPR---DHELISLMERS--QTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANNSLVQ 240 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~---~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~ 240 (269)
.+ ...+|++++|+|++...... ...++..+... +.|+++|+||+|+......... ...+....... ....
T Consensus 104 ~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~ 179 (228)
T 2qu8_A 104 AL---AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV-KNPI 179 (228)
T ss_dssp HH---HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC-CSCE
T ss_pred Hh---hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc-CCCc
Confidence 22 23479999999998654432 23455556554 7899999999999865333221 11222222221 1126
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++++||++|.|+++++++|.+.+..
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999887643
No 13
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.90 E-value=1e-24 Score=185.71 Aligned_cols=163 Identities=20% Similarity=0.207 Sum_probs=114.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++.. ..+++.||+|.+.... ..+..+.+|||||+...............+...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3689999999999999999999984 6789999999886433 2367899999999865421100000111222333
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
.. ...+|++++|+|++. ......+..++...++|+++|+||+|+............+.+.+ +.|++++||+
T Consensus 81 ~~-~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l------g~~~i~~SA~ 151 (274)
T 3i8s_A 81 IL-SGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL------GCPVIPLVST 151 (274)
T ss_dssp HH-HTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH------TSCEEECCCG
T ss_pred Hh-hcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc------CCCEEEEEcC
Confidence 32 234999999999875 23445666777778999999999999864322111122233222 4789999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 024325 249 SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~ 265 (269)
+|.|+++|+++|.+.+.
T Consensus 152 ~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKA 168 (274)
T ss_dssp GGHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988654
No 14
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=1.7e-23 Score=189.49 Aligned_cols=160 Identities=20% Similarity=0.257 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
|+|+++|.||+|||||+|+|++. ..+.+++.||+|+|..... .+..+.+|||||+.... .+.+..........+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~- 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNM- 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc-cchHHHHHHHHHHHH-
Confidence 68999999999999999999998 5677899999999975433 36679999999986421 111111112222233
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHH-HHHHHhcCCCCCCeEEeeCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI-EESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vSa~ 248 (269)
...+|++++|+|+..+++..+..+.+++...++|+++|+||+|+... .. ... .+ +... ...+++++||+
T Consensus 79 --~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~--~~---~~~~~~-~~~l--g~~~~~~iSA~ 148 (439)
T 1mky_A 79 --IREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--FE---REVKPE-LYSL--GFGEPIPVSAE 148 (439)
T ss_dssp --HTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--HH---HHTHHH-HGGG--SSCSCEECBTT
T ss_pred --HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--cH---HHHHHH-HHhc--CCCCEEEEecc
Confidence 34499999999999888888888888888889999999999998532 11 111 11 1111 12367999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 024325 249 SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~ 265 (269)
+|.|+++|+++|.+.+.
T Consensus 149 ~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 149 HNINLDTMLETIIKKLE 165 (439)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999999987764
No 15
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=5.5e-24 Score=192.62 Aligned_cols=171 Identities=20% Similarity=0.253 Sum_probs=115.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchh-HHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELV 165 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~-~~~~~~~~~~~ 165 (269)
...++|+++|.+|+|||||+|+|++. ....+++++|||++.. +...+..+.+|||||+...... +.+ +.+..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT-EKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCC-SHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchH-HHHHHHH
Confidence 34689999999999999999999998 4567899999999873 3334667999999998542110 000 1111110
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHhcCCCCCCeE
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
.......+|++++|+|+..+...++..++..+...+.|+++|+||+|+.+... ..+..+.+.+.+... ...|++
T Consensus 251 --~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 326 (436)
T 2hjg_A 251 --ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPIL 326 (436)
T ss_dssp --HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG--TTSCEE
T ss_pred --HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC--CCCCEE
Confidence 11112238999999999998888888888888888999999999999986543 223333333333221 257899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++||++|.|+++|++.|.+.+..
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887653
No 16
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.90 E-value=2.4e-22 Score=160.86 Aligned_cols=169 Identities=25% Similarity=0.411 Sum_probs=114.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhH-HHHHHHHHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVKEYVST 171 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~-~~~~~~~~~~~~~~~~ 171 (269)
++|+++|.+|+|||||+|+|++.. ..++..|++|.+......+ .+.+|||||+......+ ...+.+..+...|+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999873 4567778888777665545 79999999975432211 1123344555556655
Q ss_pred -ccccceEEEEEeCCCC-----------CCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-CCC
Q 024325 172 -RVSLKRVCLLIDTKWG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSL 238 (269)
Q Consensus 172 -~~~~d~vl~vid~~~~-----------~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 238 (269)
...++++++|+|+... ....+.+++..+...+.|+++|+||+|+.... ....+.+.+.+... ...
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGGGH
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhhcc
Confidence 6668899999997521 11122334455556689999999999998764 22223333222110 000
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
..+++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 157 DKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 1257999999999999999999887654
No 17
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.7e-23 Score=190.44 Aligned_cols=172 Identities=20% Similarity=0.257 Sum_probs=119.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...++|+++|.+|+|||||+|+|++. ....+++++|||++. .+...+..+.+|||||++.........+.+..+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~-- 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL-- 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH--
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH--
Confidence 45689999999999999999999987 457889999999986 333446689999999976431110000111111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
........+|++++|+|+..++..++..++..+...++|+++|+||+|+.+... ..+..+.+.+.+... ...|+++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 347 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPILF 347 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG--TTSCEEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC--CCCCEEE
Confidence 111122238999999999998888888999988888999999999999986432 233334444332221 2478999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+||++|.|+++|+++|.+.+..
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 18
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=1.7e-23 Score=165.88 Aligned_cols=157 Identities=23% Similarity=0.246 Sum_probs=107.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
..+|+++|.+|+|||||+|+|++. ....+++++++|.+... ...+..+.+|||||+...... .... . ....
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~--~-~~~~ 77 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE--VERI--G-IERA 77 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH--HHHH--H-HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH--HHHH--H-HHHH
Confidence 468999999999999999999987 44567888999877532 223557899999998653211 1100 0 1111
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
......+|++++|+|+.......+..++..+... ++|+++|+||+|+..... ........+++++
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------------~~~~~~~~~~~~~ 145 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------------GMSEVNGHALIRL 145 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EEEEETTEEEEEC
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------------hhhhccCCceEEE
Confidence 1122349999999999876655555565555443 589999999999853210 0001124578999
Q ss_pred eCCCCCCHHHHHHHHHHhhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~~ 266 (269)
||++|.|+++|+++|.+.+..
T Consensus 146 SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC--
T ss_pred eCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999887653
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.9e-23 Score=189.02 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
++|+++|.||+|||||+|+|++. ..+.+++.||+|+|..+... +..+.+|||||+.... ......+......++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc--hhHHHHHHHHHHHHH
Confidence 68999999999999999999998 56788999999999876543 6779999999985321 112222222222333
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
..+|++++|+|+..+.+..+.++.+.+...++|+++|+||+|+..... .+.+.. .. ...+++++||++
T Consensus 81 ---~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~------~~~~~~-~l--g~~~~~~iSA~~ 148 (436)
T 2hjg_A 81 ---DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-SL--GFGEPYPISGTH 148 (436)
T ss_dssp ---HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----------CCCSSG-GG--SSCCCEECBTTT
T ss_pred ---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh------hHHHHH-Hc--CCCCeEEEeCcC
Confidence 339999999999988888888888888888899999999999875321 000111 11 123689999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 024325 250 GAGIRSLRTVLSKIAR 265 (269)
Q Consensus 250 g~gi~~L~~~i~~~~~ 265 (269)
|.|+++|+++|.+.+.
T Consensus 149 g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFK 164 (436)
T ss_dssp TBTHHHHHHHHHHTGG
T ss_pred CCChHHHHHHHHHhcC
Confidence 9999999999988774
No 20
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=5.8e-23 Score=173.39 Aligned_cols=159 Identities=25% Similarity=0.318 Sum_probs=112.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++.. ..+++.||+|.+..... .+..+.+|||||+....... .. ..+...|
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~---e~v~~~~ 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS-ID---EKIARDY 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS-HH---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC-HH---HHHHHHH
Confidence 3689999999999999999999973 45788999998865332 25689999999986532111 00 1233344
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
+.. ..+|++++|+|++.. .....+...+...++|+++|+||+|+............+.+.+ +.|++++||+
T Consensus 79 ~~~-~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l------g~~vi~~SA~ 149 (258)
T 3a1s_A 79 LLK-GDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHL------GIPVVFTSSV 149 (258)
T ss_dssp HHH-SCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHH------CSCEEECCTT
T ss_pred Hhh-cCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHc------CCCEEEEEee
Confidence 432 348999999999752 2334566666777899999999999854322111112222222 4799999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 024325 249 SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~ 265 (269)
+|.|+++|+++|.+.+.
T Consensus 150 ~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 150 TGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhh
Confidence 99999999999988764
No 21
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=5.8e-23 Score=177.16 Aligned_cols=162 Identities=20% Similarity=0.235 Sum_probs=116.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCC-CcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYG-FAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~-~~~~~~~~~~~~~~~~~~ 167 (269)
...|+++|++|||||||+|+|++. ..+.+++.+++|++... ...+..+.++||||+. ... . .....+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~--~---~l~~~~~~~ 81 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK--R---AINRLMNKA 81 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH--H---HHHHHHTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch--h---hHHHHHHHH
Confidence 357999999999999999999998 66778888999886432 2235679999999985 210 0 011122222
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC-chHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
....+..+|++++|+|+.. +...+..+++.+...+.|+++|+||+|+.. ..........+ ..... ..+++++|
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l----~~~~~-~~~~i~iS 155 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFL----ASQMN-FLDIVPIS 155 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHH----HTTSC-CSEEEECC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHH----HHhcC-cCceEEEE
Confidence 2345567999999999987 777777777777777899999999999986 33332222222 11111 23689999
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q 024325 247 SKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~ 265 (269)
|++|.|+++|++.|...+.
T Consensus 156 A~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTTHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 9999999999999987653
No 22
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.89 E-value=1e-23 Score=167.16 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=111.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...++|+++|.+|+|||||+|+|++.. ......+++|.+.. +...+..+.+|||||......
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 70 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT------------- 70 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-------------
Confidence 346799999999999999999999873 33444555555542 223466789999999743211
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC-CC--CCCeE
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SL--VQPVM 243 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~~vi 243 (269)
........+|++++|+|+..+......+.+..+...+.|+++|+||+|+..... ......+.. ..... .. ..+++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 71 MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELME-YNLVPEEWGGDTIFC 148 (178)
T ss_dssp SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTT-TTCCBTTTTSSEEEE
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHh-cCcChhHcCCcccEE
Confidence 011234458999999999876666666677767667899999999999986421 111111111 00000 01 14799
Q ss_pred EeeCCCCCCHHHHHHHHHHhhhhhc
Q 024325 244 MVSSKSGAGIRSLRTVLSKIARFAK 268 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~~~k 268 (269)
++||++|.|+++|+++|.+.+...+
T Consensus 149 ~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 149 KLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred EEecCCCCCHHHHHHHHHHhhhhhc
Confidence 9999999999999999998876654
No 23
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.89 E-value=4.5e-23 Score=175.20 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=111.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.++|+++|.+|+|||||+|+|++.. ..++++||+|.+...... +..+.+|||||........ . ...+...|+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~-~---~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS-P---EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS-H---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC-h---HHHHHHHHH
Confidence 4689999999999999999999973 578999999987643322 5689999999986431111 0 123334444
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.. ..+|++++|+|++.. .....+...+...++|+++|+||+|+............+.+.+ +.|++++||++
T Consensus 77 ~~-~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~ 147 (272)
T 3b1v_A 77 LS-QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL------GVPVVATSALK 147 (272)
T ss_dssp HT-TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBTTT
T ss_pred hc-CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc------CCCEEEEEccC
Confidence 43 359999999998741 2233455556667899999999999853221111112222222 47899999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 024325 250 GAGIRSLRTVLSKIAR 265 (269)
Q Consensus 250 g~gi~~L~~~i~~~~~ 265 (269)
|.|+++|+++|.+.+.
T Consensus 148 g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 148 QTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TBSHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988654
No 24
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.89 E-value=5.8e-22 Score=161.50 Aligned_cols=179 Identities=37% Similarity=0.485 Sum_probs=115.9
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 87 ~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
++.....+|+++|++|||||||+|+|++......+++.+|+|.....+..+..+.++||||+..........+.|.....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 33445678999999999999999999987324556778888877655444447899999998643111111233444555
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
.|+.....++.+++++|...+....+.++..++...+.|+++|.||+|+.+..+.......+...+... ....+.+++|
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~S 179 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF-NGDVQVETFS 179 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG-CSCEEEEECB
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc-CCCCceEEEe
Confidence 566555668999999999876665555677777778899999999999987654332223333333221 1235678999
Q ss_pred CCCCCCHHHHHHHHHHhhhh
Q 024325 247 SKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~~ 266 (269)
|+++.|+++++++|.+.+..
T Consensus 180 al~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 180 SLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTTTBSHHHHHHHHHHHHC-
T ss_pred ecCCCCHHHHHHHHHHHHhh
Confidence 99999999999999887643
No 25
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.88 E-value=1.4e-22 Score=158.64 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=93.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.++|+++|.+|+|||||+|+|++. .....++.++++........ ...+.+|||||.... ..+...++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG----------RWLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCccc----------hhhhhhhh
Confidence 468999999999999999999987 44566777777776544332 346889999996321 22223333
Q ss_pred hcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
..+|++++|+|.+....... ..++..+.. .++|+++|+||+|+.+........ ....... ...++++
T Consensus 71 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~--~~~~~~~---~~~~~~~ 142 (166)
T 3q72_A 71 ---AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE--GRACAVV---FDCKFIE 142 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHH--HHHHHHH---TTCEEEE
T ss_pred ---hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHH--HHHHHHH---hCCcEEE
Confidence 23899999999875321111 223333332 368999999999998643321111 1111111 2468999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
+||++|.|+++++++|.+.+...
T Consensus 143 ~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 143 TSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CBGGGTBSHHHHHHHHHHHHHHH
T ss_pred eccCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999887643
No 26
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=1.8e-22 Score=171.83 Aligned_cols=171 Identities=19% Similarity=0.273 Sum_probs=102.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCC-------CCCceeEeeEEEe---C--CcEEEEcCCCCCCcchh----H
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL---G--TKLCLVDLPGYGFAYAK----E 155 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-------~~gtt~~~~~~~~---~--~~~~lvDtpG~~~~~~~----~ 155 (269)
.++|+++|.+|+|||||+|+|++.. ...... .++++.+...... + ..+.+|||||+++.... .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4689999999999999999999873 322221 2223333322211 2 27999999999754221 1
Q ss_pred HHHHHHHHHHHHHHhc----------ccccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHH
Q 024325 156 EVKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~----------~~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~ 224 (269)
.+.+....-...|+.. ...+|+++++++.+ .++...+..+++.+.. ++|+++|+||+|+..+.+....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHH
Confidence 1111111111233322 11267888888654 4778888888888877 8999999999999987777666
Q ss_pred HHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 225 AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 225 ~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
...+.+.+... ..+++++||++++|+++++++|.+.+.++
T Consensus 166 ~~~i~~~l~~~---~i~v~~~sa~~~~~~~~l~~~l~~~~p~~ 205 (274)
T 3t5d_A 166 KKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDRLPLA 205 (274)
T ss_dssp HHHHHHHHHHT---TCCCCCC-----------CHHHHHTCSEE
T ss_pred HHHHHHHHHHc---CCeEEcCCCCCChhHHHHHHHHhcCCCcE
Confidence 56666555432 46789999999999999999999877654
No 27
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=7.6e-23 Score=160.87 Aligned_cols=158 Identities=27% Similarity=0.293 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
++|+++|++|+|||||+|+|++.. ..++..|++|.+... ...+..+.+|||||+....... ....+...|+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~~ 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDYI 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHHH
Confidence 589999999999999999999873 456777877766432 2235679999999986431111 0112333343
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.. ..+|++++|+|+... .....++..+...+.|+++|+||+|+..........+.+.+.+ ..+++++||++
T Consensus 78 ~~-~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~SA~~ 148 (165)
T 2wji_A 78 IN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL------GVKVVPLSAAK 148 (165)
T ss_dssp HH-HCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBGGG
T ss_pred hc-CCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHh------CCCEEEEEcCC
Confidence 31 238999999998741 1223455555556899999999999853211111112222221 36899999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 024325 250 GAGIRSLRTVLSKIAR 265 (269)
Q Consensus 250 g~gi~~L~~~i~~~~~ 265 (269)
|+|+++++++|.+.++
T Consensus 149 ~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 149 KMGIEELKKAISIAVK 164 (165)
T ss_dssp TBSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999987763
No 28
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=1.9e-22 Score=158.53 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=101.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|.+|+|||||+|+|++. ......+..+.+.. .+...+..+.+|||||.... ..+. ..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~----------~~~~---~~ 70 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG-EVVTTIPTIGFNVE-TVTYKNLKFQVWDLGGLTSI----------RPYW---RC 70 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS-SCCCCCCCSSEEEE-EEEETTEEEEEEEECCCGGG----------GGGG---GG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC-CCCCcCCcCccceE-EEEECCEEEEEEECCCChhh----------hHHH---HH
Confidence 3579999999999999999999887 32222222222211 12223677999999997431 1111 12
Q ss_pred cccccceEEEEEeCCCCCCcc--hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
....+|++++|+|+....... ...+...+.. .+.|+++|+||+|+.+..........+.. ........+++++
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 148 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL--PALKDRKWQIFKT 148 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCTTSCEEEEEC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc--hhccCCceEEEEC
Confidence 234599999999998653322 2223333332 47899999999999876433332222211 1112234579999
Q ss_pred eCCCCCCHHHHHHHHHHhhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~~ 266 (269)
||++|.|+++++++|.+.+..
T Consensus 149 Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 149 SATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999887753
No 29
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=6.6e-22 Score=179.11 Aligned_cols=171 Identities=25% Similarity=0.309 Sum_probs=113.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhH-HHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVK 166 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~-~~~~~~~~~~~ 166 (269)
..++|+++|++|||||||+|+|++. ....+++++|||++.. +...+..+.+|||||+....... ...+.+..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~-- 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY-- 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCH--
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHH--
Confidence 4589999999999999999999998 4567999999999863 33346679999999984321100 000000000
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
........+|++++|+|+..+....+..+...+...+.|+++|+||+|+..... ..+....+.+.+.. ....|+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 333 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF--IDYSPLIF 333 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG--GTTSCEEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhcc--CCCCcEEE
Confidence 001112238999999999887777777777778888999999999999986533 22233333322221 12468999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+||++|.|+++|++.|.+.+..
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 30
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.9e-22 Score=183.44 Aligned_cols=159 Identities=19% Similarity=0.293 Sum_probs=103.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.|+|+++|.+|+|||||+|+|++. ..+.+.+.||+|++...... +..+.+|||||+... .+...+.+......+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIA 99 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHHHHhh
Confidence 579999999999999999999998 66788999999999876653 678999999998632 111122222233333
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
+. .+|++++|+|+..++...+.++.+.+...++|+++|+||+|+..... ...+.. . ....+++++||+
T Consensus 100 ~~---~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~------~~~e~~-~--lg~~~~~~iSA~ 167 (456)
T 4dcu_A 100 MD---EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-S--LGFGEPYPISGT 167 (456)
T ss_dssp HH---HCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------CCSG-G--GSSSSEEECCTT
T ss_pred Hh---hCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh------hHHHHH-H--cCCCceEEeecc
Confidence 33 39999999999988888899999999888999999999999864321 111111 1 112356899999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 024325 249 SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~ 265 (269)
+|.|+++|++.+.+.+.
T Consensus 168 ~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TCTTHHHHHHHHHTTGG
T ss_pred cccchHHHHHHHHhhcc
Confidence 99999999999987764
No 31
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.88 E-value=4.6e-22 Score=160.42 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=103.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCcccc--CCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~--s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...++|+++|.+|+|||||+|+|++. ....+ .+..+.+... +...+..+.+|||||.... ..+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~-~~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~- 81 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA-QSSSKHITATVGYNVET-FEKGRVAFTVFDMGGAKKF----------RGLWE- 81 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC-C----CCCCCSSEEEEE-EEETTEEEEEEEECCSGGG----------GGGGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC-CCcccccccccceeEEE-EEeCCEEEEEEECCCCHhH----------HHHHH-
Confidence 44579999999999999999999997 33332 3333322221 2234677999999997431 11112
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh-----------CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~-----------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 235 (269)
.....+|++++|+|+........ ..++..+... ++|+++|+||+|+............+..... .
T Consensus 82 --~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~ 158 (199)
T 4bas_A 82 --TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL-M 158 (199)
T ss_dssp --GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH-H
T ss_pred --HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh-c
Confidence 22345999999999985422221 1233333222 7899999999999877444333333321111 0
Q ss_pred CCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
.....+++++||++|.|+++++++|.+.+..
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 2235689999999999999999999887653
No 32
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=5.4e-22 Score=181.33 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=116.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcC---c--cccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWG---V--VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~---~--~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 163 (269)
.++|+++|.+|+|||||+|+|++... . ...+..+|+|.+..+. ..+..+.+|||||+ ..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-------------~~ 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------AD 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH-------------HH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh-------------HH
Confidence 46899999999999999999998731 1 2234566777776432 23568999999996 23
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-CCCCCCe
Q 024325 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPV 242 (269)
Q Consensus 164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~v 242 (269)
+..........+|++++|+|+..+...+..+.+..+...++|+++|+||+|+.+........+.+.+.+... .....++
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 344455556679999999999988888888888888888999999999999997655555556666655443 2225789
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|+|+++|+++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999988654
No 33
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.88 E-value=1.6e-21 Score=159.37 Aligned_cols=156 Identities=21% Similarity=0.327 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHH-HH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEE-LV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~-~~ 165 (269)
..++|+++|.+|+|||||+|+|++.. +...+++++.+...... +..+.+|||||... +.. +.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES----------LRFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH----------HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCChh----------HHHHHH
Confidence 35799999999999999999999872 34455555555443333 35699999999721 122 33
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHH----HHH-----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh--
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS----LME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-- 234 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~----~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-- 234 (269)
..|+. .+|++++|+|+.. .........+ .+. ..+.|+++|+||+|+..........+.+.+.+..
T Consensus 73 ~~~~~---~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 148 (214)
T 2fh5_B 73 DRFKS---SARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR 148 (214)
T ss_dssp HHHGG---GEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHh---hCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHh
Confidence 44433 4999999999874 1111222222 222 2368999999999998765555555555554441
Q ss_pred -----------------cCCC-------------CCCeEEeeCCCC------CCHHHHHHHHHHh
Q 024325 235 -----------------NNSL-------------VQPVMMVSSKSG------AGIRSLRTVLSKI 263 (269)
Q Consensus 235 -----------------~~~~-------------~~~vi~vSa~~g------~gi~~L~~~i~~~ 263 (269)
.... ..+++++||++| .|+++++++|.+.
T Consensus 149 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 149 VTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0000 456899999999 9999999999875
No 34
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=9.8e-22 Score=176.12 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=113.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee--------------Eee-----E---EEeCCcEEEEcCCC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--------------TIN-----F---FKLGTKLCLVDLPG 147 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~--------------~~~-----~---~~~~~~~~lvDtpG 147 (269)
...++|+++|.+|+|||||+|+|++.. ......++.++. +.. . ......+.+|||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 456799999999999999999999852 111111111110 000 0 01125689999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCchHHHHHH
Q 024325 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRA 225 (269)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~~~~~~ 225 (269)
+.. +..........+|++++|+|+..+. ..+..+++..+...+. |+++|+||+|+.+........
T Consensus 85 h~~-------------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 85 HEV-------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp CGG-------------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cHH-------------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence 732 2223333445599999999999876 5566677777776664 899999999999876666666
Q ss_pred HHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 226 ~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.+.+.+........|++++||++|.|+++|+++|.+.+.
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 6666655544444678999999999999999999988653
No 35
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.87 E-value=3.3e-22 Score=159.59 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|.+|+|||||+|+|++. ......+..|++..... ..+..+.+|||||.... ..+...++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~~-~~~~~l~i~Dt~G~~~~----------~~~~~~~~~ 82 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI----------RPYWRSYFE 82 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEEE-ETTEEEEEEECSSCGGG----------HHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEEE-ECCEEEEEEECCCCHHH----------HHHHHHHhC
Confidence 4579999999999999999999987 44444555554432222 23677999999997321 122233333
Q ss_pred cccccceEEEEEeCCCCCCcch-HHHHH-HHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~-~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
.+|++++|+|+........ ..++. .+. ..+.|+++|+||+|+..........+.+. +........+++++
T Consensus 83 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 157 (181)
T 1fzq_A 83 ---NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN--LHTIRDRVWQIQSC 157 (181)
T ss_dssp ---TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred ---CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhC--chhccCCceEEEEc
Confidence 4999999999875322211 12222 222 24689999999999986543322222111 01111224578999
Q ss_pred eCCCCCCHHHHHHHHHHhhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~~ 266 (269)
||++|.|+++++++|.+.+..
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 158 SALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTTCTTHHHHHHHHHHTC--
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887643
No 36
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.87 E-value=9.7e-22 Score=155.08 Aligned_cols=157 Identities=13% Similarity=0.030 Sum_probs=96.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++. ......+.+|++........ ...+.+|||||.... ....+...+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 74 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL--------DKSWSQESC 74 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT
T ss_pred EEEEEEECCCCccHHHHHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCcc--------chhhhHHhh
Confidence 468999999999999999999987 44445556666544433332 236889999997431 011222222
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh----CCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCe
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v 242 (269)
...+|++++|+|......... ..++..+... ++|+++|+||+|+.+..+.. .....+.. .. ..++
T Consensus 75 ---~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---~~---~~~~ 145 (175)
T 2nzj_A 75 ---LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV---VF---DCKF 145 (175)
T ss_dssp ---TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH---HH---TSEE
T ss_pred ---cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH---Hc---CCeE
Confidence 234899999999874322111 2344444432 68999999999997643221 11111111 11 3689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++||++|.|+++++++|.+.+..
T Consensus 146 ~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 146 IETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 37
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=7e-22 Score=154.38 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
.+|+++|.+|+|||||+|+|++.. . ....|...... .+...+..+.+|||||.... ..+...++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~-~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~-- 65 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE-I--VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYF-- 65 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC-S--SCCCCCSSCCEEEEECSSCEEEEEECCCCGGG----------HHHHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-c--CcccCcCceeEEEEEECCEEEEEEEcCCChhh----------HHHHHHHh--
Confidence 379999999999999999999862 2 22233211111 12223678999999997321 22223333
Q ss_pred ccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 172 RVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
..+|++++|+|+........ ..++..+.. .+.|+++|+||+|+............+. .........+++++|
T Consensus 66 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~S 142 (164)
T 1r8s_A 66 -QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRHRNWYIQATC 142 (164)
T ss_dssp -TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCSSCCEEEEECB
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhC--cccccCccEEEEEcc
Confidence 34999999999875422111 122332222 2789999999999986533222222111 011112345799999
Q ss_pred CCCCCCHHHHHHHHHHhhhhh
Q 024325 247 SKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~~~ 267 (269)
|++|.|+++++++|.+.+...
T Consensus 143 a~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 143 ATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp TTTTBTHHHHHHHHHHHC---
T ss_pred cCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999877543
No 38
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=7.7e-22 Score=157.66 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|.+|+|||||+|+|++.. .....+..+.+.. .....+..+.+|||||... +.. ....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~----------~~~---~~~~ 81 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK-TLEHRGFKLNIWDVGGQKS----------LRS---YWRN 81 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE-EEEETTEEEEEEEECCSHH----------HHT---TGGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE-EEEECCEEEEEEECCCCHh----------HHH---HHHH
Confidence 45799999999999999999999873 3333333332222 1222467799999999721 111 1223
Q ss_pred cccccceEEEEEeCCCCCCcch-HHHHHHH-Hh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
....+|++++|+|++....... ..++..+ .. .+.|+++|+||+|+..........+.+. .........+++++
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 159 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE--LDSIRSHHWRIQGC 159 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhC--hhhccCCceEEEEe
Confidence 3456999999999875422221 1233333 22 4689999999999987544332222111 01111234679999
Q ss_pred eCCCCCCHHHHHHHHHHhhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~~ 266 (269)
||++|.|+++++++|.+.+..
T Consensus 160 Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 160 SAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 39
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.87 E-value=2.2e-22 Score=171.02 Aligned_cols=159 Identities=23% Similarity=0.292 Sum_probs=111.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|++|||||||+|+|++.. ..+++.|++|.+.... ..+..+.+|||||+........ . ..+...|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI-D---ELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH-H---HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH-H---HHHHHHh
Confidence 4689999999999999999999983 4788899998886432 2356799999999865321111 1 1122333
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
+. ...+|++++|+|++.. .....+...+...+ .|+++|+||+|+............+.+.+ +.|++++||
T Consensus 77 ~~-~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~~~~~Sa 147 (271)
T 3k53_A 77 IL-DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL------GVPVIPTNA 147 (271)
T ss_dssp HH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH------SSCEEECBG
T ss_pred hh-ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc------CCcEEEEEe
Confidence 32 2359999999999753 23344555555566 99999999999764322111122333322 478999999
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024325 248 KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 248 ~~g~gi~~L~~~i~~~~~ 265 (269)
++|.|+++++++|.+.+.
T Consensus 148 ~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAE 165 (271)
T ss_dssp GGTBTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.87 E-value=7e-22 Score=157.83 Aligned_cols=153 Identities=17% Similarity=0.124 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ....+++++.+.... ..+ ..+.+|||||.... ..+..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 70 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRD 70 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH----------HHHHH
Confidence 3689999999999999999999872 345555565543221 122 34778999996432 12222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.++.. +|++++|+|......... ..++..+.. .+.|+++|+||+|+............+.... ..+
T Consensus 71 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------~~~ 141 (189)
T 4dsu_A 71 QYMRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY------GIP 141 (189)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH------TCC
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc------CCe
Confidence 33333 899999999875321111 223333332 3689999999999986433333333333222 468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++|.|+++++++|.+.+..
T Consensus 142 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 142 FIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887653
No 41
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=160.70 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=99.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
..++|+++|.+|+|||||+|+|++... .....+..+.+.. .+...+..+.+|||||..... .+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~----------~~~~~-- 86 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE-KFKSSSLSFTVFDMSGQGRYR----------NLWEH-- 86 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE-EEECSSCEEEEEEECCSTTTG----------GGGGG--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE-EEEECCEEEEEEECCCCHHHH----------HHHHH--
Confidence 347999999999999999999998731 1111222221111 122236789999999974321 11112
Q ss_pred hcccccceEEEEEeCCCCCCcc--hHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 170 STRVSLKRVCLLIDTKWGVKPR--DHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
....+|++++|+|+....... ...+...+.. .+.|+++|+||+|+..........+.+. +........++
T Consensus 87 -~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~ 163 (190)
T 2h57_A 87 -YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC--LENIKDKPWHI 163 (190)
T ss_dssp -GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT--GGGCCSSCEEE
T ss_pred -HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC--hhhccCCceEE
Confidence 233489999999987531111 1222233333 4689999999999986543333222211 01111235689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhhhc
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARFAK 268 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~~k 268 (269)
+++||++|.|+++++++|.+.++..|
T Consensus 164 ~~~Sa~~~~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 164 CASDAIKGEGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC----
T ss_pred EEccCCCCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887653
No 42
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=1.8e-22 Score=173.51 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=111.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhcCcCcc-----ccCCCCC----------------------ceeEe---------
Q 024325 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQTI--------- 131 (269)
Q Consensus 88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-----~~s~~~g----------------------tt~~~--------- 131 (269)
+....|+|+++|.+|+|||||+|+|++. ... .++..|+ +|.+.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~-~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~ 100 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAET 100 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTS-CCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCC-CcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 3456789999999999999999999997 333 3445554 33320
Q ss_pred -----------------eEEE-eCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceE-EEEEeCCCCCC
Q 024325 132 -----------------NFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRV-CLLIDTKWGVK 189 (269)
Q Consensus 132 -----------------~~~~-~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v-l~vid~~~~~~ 189 (269)
.... ....+.+|||||+..... .+.+...+..+...|+.. ++.+ ++|+|+..++.
T Consensus 101 ~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~ 177 (299)
T 2aka_B 101 DRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLA 177 (299)
T ss_dssp HHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGG
T ss_pred HHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchh
Confidence 0000 136799999999875321 222333445566666653 5544 57999987666
Q ss_pred cchH-HHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 190 PRDH-ELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 190 ~~~~-~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
..+. .+++.+...+.|+++|+||+|+.+... ... .+...+........+++++||++|.|+++|+++|.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 178 NSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp GCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHH---HHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 6653 566777667899999999999986533 111 111100000001246889999999999999999877543
No 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8.7e-22 Score=157.66 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=100.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|.+|+|||||+|+|++.. .....+..+.+... +...+..+.+|||||.... ..+...++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~- 81 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESL----------RSSWNTYY- 81 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS-CEEEECCSCSSCEE-EEETTEEEEEEECCC--------------CGGGHHHH-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCcCcCCCccceEE-EEECCEEEEEEECCCCHhH----------HHHHHHHh-
Confidence 34799999999999999999999763 23333433333221 2224678999999997431 11222333
Q ss_pred cccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
..+|++++|+|++....... ..++..+.. .+.|+++|+||+|+.......+..+.+.. ........+++++
T Consensus 82 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~~ 157 (187)
T 1zj6_A 82 --TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL--TSIKDHQWHIQAC 157 (187)
T ss_dssp --TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCCSSCEEEEEC
T ss_pred --cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhCh--hhhcCCCcEEEEc
Confidence 24999999999986532222 223333332 47899999999999864333322222211 0112234589999
Q ss_pred eCCCCCCHHHHHHHHHHhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~ 265 (269)
||++|.|+++++++|.+.+.
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 158 CALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp BTTTTBTHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 44
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=1.9e-21 Score=174.65 Aligned_cols=163 Identities=20% Similarity=0.297 Sum_probs=116.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEE--------------------------eCCcEEE
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLCL 142 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~--------------------------~~~~~~l 142 (269)
...++|+++|++|+|||||+++|++... .......+|+|.+..+.. ....+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3457899999999999999999997521 111122355565543211 0146899
Q ss_pred EcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCchH
Q 024325 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID 220 (269)
Q Consensus 143 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~ 220 (269)
|||||+ ..+...+......+|++++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+...
T Consensus 88 iDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 88 IDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred EECCCh-------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence 999995 344556667777799999999999876 5666666666666664 7999999999998655
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 221 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.....+.+.+.+........|++++||++|.|+++|+++|.+.+.
T Consensus 155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 444445555554433234579999999999999999999987653
No 45
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.87 E-value=3e-22 Score=159.66 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|.+|+|||||+|+|++. ......+..+.+... +...+..+.+|||||.... ..+.. .
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~---~ 84 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN-EVVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESL----------RSSWN---T 84 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT-SCEEEECCSSSSCEE-EEETTEEEEEEEESSSGGG----------TCGGG---G
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC-CCCccCCcCceeeEE-EEECCEEEEEEECCCCHhH----------HHHHH---H
Confidence 3579999999999999999999987 344455555544322 2224678999999997431 11111 2
Q ss_pred cccccceEEEEEeCCCCCCcch-HHHHHH-HH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD-HELISL-ME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~-l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
....+|++++|+|+........ ..++.. +. ..+.|+++|+||+|+..........+.+. .........+++++
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~ 162 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTSIKDHQWHIQAC 162 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhC--cccccCCceEEEEc
Confidence 2345999999999986533222 222333 32 25789999999999986433322222111 11112234579999
Q ss_pred eCCCCCCHHHHHHHHHHh
Q 024325 246 SSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~ 263 (269)
||++|.|+++++++|.+.
T Consensus 163 Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 163 CALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp BTTTTBTHHHHHHHHHTC
T ss_pred cCCCCcCHHHHHHHHHhh
Confidence 999999999999999764
No 46
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=2.6e-21 Score=173.59 Aligned_cols=163 Identities=22% Similarity=0.286 Sum_probs=108.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEEe--------------------------CCcEEE
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKL--------------------------GTKLCL 142 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~~--------------------------~~~~~l 142 (269)
...++|+++|++++|||||+++|++... .......+|+|.+..+... ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3457999999999999999999997521 1112223556665432110 146899
Q ss_pred EcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCchH
Q 024325 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID 220 (269)
Q Consensus 143 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~ 220 (269)
|||||+ ..+...+......+|++++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+...
T Consensus 86 iDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 86 VDSPGH-------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EECSSH-------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred EECCCH-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence 999995 344556677777899999999999876 5666666666666554 7999999999987644
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 221 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.....+.+.+.+........+++++||++|+|+++|+++|.+.+.
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 323334444444433334578999999999999999999987653
No 47
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.87 E-value=1.6e-21 Score=156.45 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=99.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
.++|+++|.+|+|||||+|+|++........+..+.+.. .+...+..+.+|||||... +..+...++
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~-- 88 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPR----------FRSMWERYC-- 88 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHH----------HHTTHHHHH--
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCHh----------HHHHHHHHH--
Confidence 468999999999999999999987311112222222211 1223366799999999621 222333333
Q ss_pred ccccceEEEEEeCCCCCCcch-HHHHH-HHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 172 RVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~-~~~~~-~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
..+|++++|+|+........ ..++. .+.. .+.|+++|+||+|+....+.......+.. ........+++++|
T Consensus 89 -~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~S 165 (188)
T 1zd9_A 89 -RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL--SAIQDREICCYSIS 165 (188)
T ss_dssp -TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEECC
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhCh--hhhccCCeeEEEEE
Confidence 34999999999875322111 12222 2222 47899999999999865333222221110 11112345789999
Q ss_pred CCCCCCHHHHHHHHHHhhhh
Q 024325 247 SKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~~ 266 (269)
|++|.|+++++++|.+.+..
T Consensus 166 A~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987654
No 48
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=7.2e-22 Score=157.97 Aligned_cols=160 Identities=26% Similarity=0.273 Sum_probs=108.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++.. ..++..|++|.+.... ..+..+.+|||||......... ...+...|
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----~~~~~~~~ 80 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARDY 80 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH----HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH----HHHHHHHH
Confidence 4689999999999999999999873 5667788888765422 2366799999999865321110 01222333
Q ss_pred HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
+.. ..++++++|+|+.. ......++..+...+.|+++|+||+|+............+.+.+ +.+++++||+
T Consensus 81 ~~~-~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~Sa~ 151 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL------GVKVVPLSAA 151 (188)
T ss_dssp HHH-HCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBGG
T ss_pred Hhc-cCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHh------CCCeEEEEec
Confidence 322 23899999999863 12223455556667899999999999864321111112222221 3689999999
Q ss_pred CCCCHHHHHHHHHHhhhh
Q 024325 249 SGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 249 ~g~gi~~L~~~i~~~~~~ 266 (269)
+|.|+++++++|.+.+..
T Consensus 152 ~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKD 169 (188)
T ss_dssp GTBSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.2e-21 Score=151.69 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++. ........+.++.+... ...+ ..+.+|||||... +..+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~- 77 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG-AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVT- 77 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS-CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC-CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH-
Confidence 468999999999999999999987 33223334444444322 1222 3689999999632 11222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (269)
......+|++++|+|+........ ..++..+.. .+.|+++|+||+|+....... .....+.+ .. ..+
T Consensus 78 --~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~ 149 (180)
T 2g6b_A 78 --HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK---EY---GLP 149 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH---HH---TCC
T ss_pred --HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH---Hc---CCe
Confidence 223345999999999875322221 234444433 468999999999998643211 11112221 11 468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++|.|+++++++|.+.+..
T Consensus 150 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 150 FMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887653
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=4e-21 Score=151.90 Aligned_cols=154 Identities=12% Similarity=0.032 Sum_probs=96.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......+.++.+. .....+ ..+.+|||||.... ..+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 74 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK--FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF----------RSLRT 74 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC--CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------HHHHG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhHH
Confidence 4789999999999999999999873 1222233333332 222222 37899999996321 22222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 238 (269)
.....+|++++|+|......... ..++..+.. .+.|+++|+||+|+........... +.... ..
T Consensus 75 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~---~~~~~--~~ 146 (177)
T 1wms_A 75 ---PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ---AWCRD--NG 146 (177)
T ss_dssp ---GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH---HHHHH--TT
T ss_pred ---HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHH---HHHHh--cC
Confidence 23345899999999875322211 223333322 4679999999999974322111111 11211 12
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
..+++++||++|.|+++++++|.+.+.
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 147 DYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999988764
No 51
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=1.9e-21 Score=152.49 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=102.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++........+..+++........ ...+.+|||||.... ..+...+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhh
Confidence 368999999999999999999987422334455555544433332 356899999997331 1122233
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+. .+|++++|+|+........ ..++..+.. ...|+++|+||+|+.+..+. ......+ ... ...+++
T Consensus 76 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~---~~~---~~~~~~ 146 (170)
T 1z0j_A 76 YR---GSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY---ADS---IHAIFV 146 (170)
T ss_dssp HT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH---HHH---TTCEEE
T ss_pred Cc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH---HHH---cCCEEE
Confidence 33 3899999999875322222 234444443 35789999999999754322 1111111 111 246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 147 ~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 147 ETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEeCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 52
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.86 E-value=8.8e-21 Score=147.74 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|+|||||+|+|++.. .....++++.+.. .... ...+.+|||||..... .+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~ 70 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH---FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQ 70 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc---CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----------HHHHH
Confidence 579999999999999999999872 2333333433321 1111 2457899999975421 11222
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
++.. +|.+++|+|+........ ..++..+.. .+.|+++|+||+|+.+..........+.+.. ..++
T Consensus 71 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~ 141 (166)
T 2ce2_X 71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSY------GIPY 141 (166)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH------TCCE
T ss_pred hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHc------CCeE
Confidence 2222 899999999874321111 233333332 2689999999999986432222222222221 4689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 142 IETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 53
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=7e-21 Score=172.17 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=107.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccc------------------------------cCCCCCceeEeeEEE---e
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR------------------------------TSDKPGLTQTINFFK---L 136 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------------~s~~~gtt~~~~~~~---~ 136 (269)
...++|+++|++|+|||||+|+|++... .. ....+|+|.+..+.. .
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTG-MVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcC-CCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3457999999999999999999965411 11 112367788765433 3
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------cchHHHHHHHHhhCCc-EEE
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQV 208 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~-------~~~~~~~~~l~~~~~p-~ii 208 (269)
+..+.+|||||+. .+..........+|++++|+|+..+.. .+..+.+..+...++| +++
T Consensus 94 ~~~~~iiDTPGh~-------------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 94 KKHFTILDAPGHK-------------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160 (439)
T ss_pred CeEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence 6689999999972 233334444455999999999987754 4666777777777888 999
Q ss_pred EEecCCCCCch----HHHHHHHHHHHHHHhcCC---CCCCeEEeeCCCCCCHHHHHH
Q 024325 209 VLTKTDTVFPI----DVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRT 258 (269)
Q Consensus 209 v~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~---~~~~vi~vSa~~g~gi~~L~~ 258 (269)
|+||+|+.... ........+.+.+..... ...+++++||++|.|++++.+
T Consensus 161 viNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999997532 223333444444333221 146899999999999999554
No 54
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=152.59 Aligned_cols=156 Identities=14% Similarity=0.081 Sum_probs=100.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
...++|+++|.+|+|||||+|+|++.. ....+++|+.+.. .... + ..+.+|||||.... ..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------HHH
Confidence 345799999999999999999999873 3444555554432 1122 2 36899999997542 122
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
...++.. +|++++|+|......... ..++..+.. .++|+++|+||+|+.+..+.. ...+....... .
T Consensus 79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~---~ 150 (206)
T 2bov_A 79 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQW---N 150 (206)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHH---T
T ss_pred HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc--HHHHHHHHHHh---C
Confidence 2333332 899999999875321111 223333332 268999999999997532211 01111112211 3
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
.+++++||++|.|+++++++|.+.+..
T Consensus 151 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 151 VNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887643
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=3.7e-21 Score=150.20 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||+|+|++.. ......+++.+.. .... ...+.+|||||.... ..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~ 70 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT---FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDL 70 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC---CcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh----------HHHHHH
Confidence 589999999999999999999873 2233333433321 1122 234889999997442 122223
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (269)
++.. +|.+++|+|......... ..++..+. ..+.|+++|+||+|+....+.. .....+.+ .. ..+
T Consensus 71 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~ 141 (167)
T 1kao_A 71 YIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE---EW---GCP 141 (167)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH---TSC
T ss_pred Hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH---Hh---CCC
Confidence 3332 899999999875322111 12222222 2378999999999987532221 11111211 11 468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++|.|+++++++|.+.+..
T Consensus 142 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 142 FMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999887654
No 56
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=4.9e-21 Score=151.45 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=99.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ..+...+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~ 84 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRSY 84 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHHHH
Confidence 479999999999999999999987321112222233333333222 346899999996321 1222333
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+. .+|++++|+|+........ ..++..+.. .+.|+++|+||+|+....... ...+.+.... ...++++
T Consensus 85 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~~ 156 (179)
T 1z0f_A 85 YR---GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAEE---NGLLFLE 156 (179)
T ss_dssp HH---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHH---TTCEEEE
T ss_pred hc---cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEEEE
Confidence 33 3899999999875422222 233333433 468999999999996432211 1112222222 2468999
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||++|.|+++++++|.+.+.
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 157 ASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987653
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=4e-21 Score=150.25 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=96.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||+|+|++.. ....+.+|+.+... ... +..+.+|||||..... .+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 70 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL 70 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC---CCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 589999999999999999999862 23333334333211 111 2358899999975421 11222
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
++.. +|++++|+|......... ..++..+.. .+.|+++|+||+|+.+...... .......... ...++
T Consensus 71 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~--~~~~~ 143 (167)
T 1c1y_A 71 YMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQGQNLARQW--CNCAF 143 (167)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHHT--TSCEE
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCH--HHHHHHHHHc--cCCcE
Confidence 3222 899999999875321111 233333332 3789999999999975322110 1111112211 14789
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 144 ~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 144 LESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHT
T ss_pred EEecCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988763
No 58
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.5e-21 Score=150.03 Aligned_cols=156 Identities=14% Similarity=0.037 Sum_probs=96.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCc-cccCCCCCceeEeeEEE-eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~s~~~gtt~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.++|+++|.+|+|||||+|+|++.... ........++....... ....+.+|||||.... ..+...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHhc
Confidence 368999999999999999999986311 11111111222211111 1346899999997542 12222333
Q ss_pred hcccccceEEEEEeCCCCCCcc-hHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCCe
Q 024325 170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~v 242 (269)
.. +|++++|+|++...... ...++..+.. .+.|+++|+||+|+.+..+... ....+.. .. ..++
T Consensus 73 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~---~~---~~~~ 143 (172)
T 2erx_A 73 SK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR---TW---KCAF 143 (172)
T ss_dssp HH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH---TCEE
T ss_pred cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH---Hh---CCeE
Confidence 32 89999999987532211 1234444433 2689999999999975432211 1111111 11 3689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++||++|.|+++++++|.+.+..
T Consensus 144 ~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 144 METSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp EECBTTTTBSHHHHHHHHHHTCCS
T ss_pred EEecCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999999987754
No 59
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=2.1e-21 Score=163.81 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=112.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-ceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-tt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
...++|+++|.+|||||||+|+|++. .....+..+. +|.+... ...+..+.+|||||+.+..... ......+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~i~ 96 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKEVQ 96 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS-CCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHHHH
Confidence 34579999999999999999999987 4344444444 5665432 2336789999999986542211 11122333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh-----CCcEEEEEe-cCCCCCchHHHHHH-----HHHHHHHHh
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFPIDVARRA-----MQIEESLKA 234 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-----~~p~iiv~N-K~Dl~~~~~~~~~~-----~~~~~~~~~ 234 (269)
..+......+|++++|+|+.. +...+..++.++... ..|.++|+| |+|+.... ..... ..+.+....
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence 344445566999999999984 666666676777654 568888888 99998542 22211 112222333
Q ss_pred cCCC---CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 235 NNSL---VQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 235 ~~~~---~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+... ..+ +++||++|.|+++|+++|.+.+..
T Consensus 175 ~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 2211 122 789999999999999999988764
No 60
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=156.49 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=97.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||.... ..+...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~~~~~~ 94 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF----------NSITSA 94 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------HHHHHH
Confidence 34689999999999999999999873111112222222222222222 46899999996321 122233
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
++.. +|++++|+|+.......+ ..++..+.. .+.|+++|+||+|+....+... ....+..... ...+++
T Consensus 95 ~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~--~~~~~~~~~~--~~~~~~ 167 (192)
T 2il1_A 95 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITR--QQGEKFAQQI--TGMRFC 167 (192)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHTS--TTCEEE
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHHHHHHhc--CCCeEE
Confidence 3332 899999999875332222 233344443 3689999999999975322211 1112222211 246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 168 ~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 168 EASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 61
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=2.3e-21 Score=156.27 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=96.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
...++|+++|.+|+|||||+|+|++.. .....+..+... ..+...+..+.+|||||.... ..+...++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 94 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKNICFTVWDVGGQDKI----------RPLWRHYF 94 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC-CEEEEEETTEEE-EEEEETTEEEEEEECC---------------CTTHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC-ccccCCcCceeE-EEEEECCEEEEEEECCCCHhH----------HHHHHHHh
Confidence 345799999999999999999998763 222111111111 112223567999999997431 11222233
Q ss_pred hcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
. .+|++++|+|+........ ..++..+.. .+.|+++|+||+|+............+.. ........++++
T Consensus 95 ~---~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~ 169 (192)
T 2b6h_A 95 Q---NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGL--QHLRSRTWYVQA 169 (192)
T ss_dssp H---TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCSSCCEEEEE
T ss_pred c---cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCc--ccccCCceEEEE
Confidence 2 3999999999975422111 122222222 36899999999999765333222221110 111122457899
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||++|.|+++++++|.+.+.
T Consensus 170 ~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 170 TCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CBTTTTBTHHHHHHHHHHHTT
T ss_pred CcCCCcCCHHHHHHHHHHHHh
Confidence 999999999999999988764
No 62
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.86 E-value=2.9e-21 Score=151.51 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=95.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......++++.+.. ....+ ..+.+|||||..... .+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~ 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR----------TITT 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS----------CCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh----------hhHH
Confidence 3689999999999999999999873 22333344443332 22222 368999999963311 1112
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.++ ..+|++++|+|+........ ..++..+.. .+.|+++|+||+|+............+.+. . ..++
T Consensus 71 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~ 141 (170)
T 1g16_A 71 AYY---RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE---L---GIPF 141 (170)
T ss_dssp HHH---TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHH---H---TCCE
T ss_pred HHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHH---c---CCeE
Confidence 222 23899999999875322111 234444443 368999999999995432222222222221 1 3689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 142 ~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 142 IESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 63
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=152.71 Aligned_cols=157 Identities=22% Similarity=0.184 Sum_probs=94.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...++|+++|.+|+|||||+|+|++........+..+++........ ...+.+|||||.... ..+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 95 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF----------RSIAK 95 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC----------HHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch----------hhhHH
Confidence 34579999999999999999999987322223333343333322222 345899999997432 12222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchH------H-HHHHHHHHHHHHhc
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPID------V-ARRAMQIEESLKAN 235 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~------~-~~~~~~~~~~~~~~ 235 (269)
.++.. +|++++|+|+........ ..++..+.. .+.|+++|+||+|+..... . ......+ ....
T Consensus 96 ~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~---~~~~ 169 (199)
T 2p5s_A 96 SYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL---AMTY 169 (199)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH---HHHH
T ss_pred HHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHH---HHHc
Confidence 33332 899999999875322222 234444443 3689999999999863211 0 1111111 1111
Q ss_pred CCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
..+++++||++|.|+++++++|.+.+.
T Consensus 170 ---~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 170 ---GALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp ---TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ---CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988764
No 64
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=6.3e-22 Score=158.66 Aligned_cols=160 Identities=20% Similarity=0.155 Sum_probs=101.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|.+|+|||||+|+|++. ......+..+.+.. .....+..+.+|||||...... + ...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~----------~---~~~ 85 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG-DVVTTVPTVGVNLE-TLQYKNISFEVWDLGGQTGVRP----------Y---WRC 85 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS-CCEEECSSTTCCEE-EEEETTEEEEEEEECCSSSSCC----------C---CSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC-CCCCcCCCCceEEE-EEEECCEEEEEEECCCCHhHHH----------H---HHH
Confidence 3579999999999999999999876 32322332232221 1222367799999999743211 0 111
Q ss_pred cccccceEEEEEeCCCCCCcch--HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
....+|++++|+|++++..... ..+...+.. .+.|+++|+||+|+.......+....+. .........+++++
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 163 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLG--VSSIMNRTWTIVKS 163 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhC--hhhccCCceEEEEc
Confidence 2335999999999986432221 222222222 3689999999999987643322222111 01112224579999
Q ss_pred eCCCCCCHHHHHHHHHHhhhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~~~ 267 (269)
||++|.|+++++++|.+.+...
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 164 SSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHT
T ss_pred cCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999887654
No 65
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.86 E-value=8.3e-22 Score=159.64 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=94.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
..+|+++|.+|||||||+|+|++. ......+..+.+.. .+...+..+.+|||||.... ..+...|
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~--- 89 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQA----------RRVWKNY--- 89 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC--------------CCGGGGG---
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC-CCCccCCCCCceeE-EEEECCEEEEEEECCCcHhh----------HHHHHHH---
Confidence 358999999999999999999987 33333343343322 22223568999999996431 1111122
Q ss_pred ccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC----------
Q 024325 172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN---------- 236 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------- 236 (269)
...+|++++|+|+........ ..++..+. ..++|+++|+||+|+......++. .+.+....
T Consensus 90 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 90 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL----REMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHH----HHHHTCTTTCCCSSCCCT
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHH----HHHhCccccccccccccc
Confidence 234899999999975322111 22233232 146899999999999763222222 22222110
Q ss_pred ----CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 237 ----SLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 237 ----~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
....+++++||++|+|+++++++|.+.+
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1245799999999999999999998754
No 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=4.6e-21 Score=150.18 Aligned_cols=153 Identities=13% Similarity=0.098 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
.+|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ..+...++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhh
Confidence 58999999999999999999987322222333344333333332 336899999996431 11222333
Q ss_pred hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCch---HH-HHHHHHHHHHHHhcCCCCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI---DV-ARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~---~~-~~~~~~~~~~~~~~~~~~~~ 241 (269)
. .+|++++|+|++....... ..++..+.. .+.|+++|+||+|+.... .. ......+. ... ..+
T Consensus 74 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~---~~~---~~~ 144 (170)
T 1ek0_A 74 R---NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLA---EEK---GLL 144 (170)
T ss_dssp T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH---HHH---TCE
T ss_pred c---cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHH---HHc---CCE
Confidence 3 3899999999875322111 223333332 368999999999997541 11 11111111 111 468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 145 FFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 67
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=5.9e-21 Score=153.52 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=101.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......++++.+.. .... + ..+.+|||||.... ..+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 83 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTITS 83 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTTHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhhHH
Confidence 4789999999999999999999873 23344455554443 2222 2 46899999996332 11222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.++. .+|++++|+|+....... -..++..+... +.|+++|+||+|+......... ........ ...++
T Consensus 84 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--~~~~~~~~---~~~~~ 155 (196)
T 3tkl_A 84 SYYR---GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT--TAKEFADS---LGIPF 155 (196)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH--HHHHHHHH---TTCCE
T ss_pred HHHh---hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHH--HHHHHHHH---cCCcE
Confidence 3333 389999999987532211 12344444433 6899999999999865322111 11111111 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++||++|.|+++++++|.+.+..
T Consensus 156 ~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 156 LETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 68
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=1.7e-20 Score=146.58 Aligned_cols=153 Identities=13% Similarity=0.061 Sum_probs=96.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ....+++++.+.. .... ...+.+|||||.... ..+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~ 70 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc---cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------HHHHH
Confidence 3689999999999999999999873 2344444443322 1111 236899999996432 22223
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.++.. +|++++|+|+........ ..++..+.. .+.|+++|+||+|+.+..+... .......... ..+
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~---~~~ 142 (168)
T 1u8z_A 71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV--EEAKNRADQW---NVN 142 (168)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCH--HHHHHHHHHH---TCE
T ss_pred HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCH--HHHHHHHHHc---CCe
Confidence 33332 899999999874321111 223333322 3689999999999975322110 1111112111 468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++++|.+.+.
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 143 YVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 69
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.86 E-value=2.9e-21 Score=152.99 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
...++|+++|.+|+|||||+|+|++. .....+++|+.+... ... ...+.+|||||..... .+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~ 73 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS---YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----------AM 73 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS---SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----------CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC---cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH----------HH
Confidence 34579999999999999999999987 234555555544321 122 2468899999975321 11
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHH-H---hhCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL 238 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~---~~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 238 (269)
...++.. +|++++|+|......... ..++..+ . ..+.|+++|+||+|+....... .....+ ... .
T Consensus 74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~---~~~---~ 144 (181)
T 2fn4_A 74 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF---GAS---H 144 (181)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH---HHH---T
T ss_pred HHHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH---HHH---c
Confidence 1222222 899999999875221111 1222222 2 2468999999999997532221 111111 111 2
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
..+++++||++|.|+++++++|.+.+..
T Consensus 145 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 145 HVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887653
No 70
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=153.96 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=99.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+|+|++.. ......++++.+... ... + ..+.+|||||..... .+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 75 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT--FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR----------TIT 75 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS----------SCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC--CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh----------hhH
Confidence 45799999999999999999999873 224445555555432 222 3 468999999953211 111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (269)
. .....+|++++|+|++.+..... ..++..+... +.|+++|+||+|+....... .....+. ... ..+
T Consensus 76 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~---~~~ 146 (181)
T 3tw8_B 76 S---TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFA---GQM---GIQ 146 (181)
T ss_dssp G---GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHH---HHH---TCC
T ss_pred H---HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHH---HHc---CCe
Confidence 1 12334899999999975322111 2233444333 58999999999987542211 1111111 111 468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++|.|+++++++|.+.+..
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 71
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.85 E-value=7.7e-21 Score=150.81 Aligned_cols=157 Identities=12% Similarity=0.084 Sum_probs=98.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++........+..+++........ ...+.+|||||.... ..+...+
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 81 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAPMY 81 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhHHH
Confidence 468999999999999999999987311111122222222222222 347899999996431 1122233
Q ss_pred HhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+. .+|++++|+|++...... ...++..+... +.|+++|+||+|+........ ..+.+.... ...++++
T Consensus 82 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~~ 153 (181)
T 2efe_B 82 YR---GAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTA--EDAQTYAQE---NGLFFME 153 (181)
T ss_dssp HT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCH--HHHHHHHHH---cCCEEEE
Confidence 32 389999999987532211 13444444443 688999999999975432111 111222222 2468999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+||++|.|+++++++|.+.+..
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 154 TSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CCSSSCTTHHHHHHHHHHTCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=5.2e-21 Score=155.94 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=99.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
...++|+++|.+|+|||||+|+|++.. ......++++.+.. .... + ..+.+|||||.... ..+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF----------RTI 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC--CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------TCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHH
Confidence 345799999999999999999999873 22333344444432 2222 2 46899999996321 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
...++. .+|++++|+|+........ ..++..+... +.|+++|+||+|+............+.... ..
T Consensus 86 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~ 156 (213)
T 3cph_A 86 TTAYYR---GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL------GI 156 (213)
T ss_dssp CHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH------TC
T ss_pred HHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc------CC
Confidence 122222 3899999999875322111 2344444432 689999999999954322112222222211 36
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 157 PFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp CEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987664
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.85 E-value=6.9e-21 Score=150.98 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
..++|+++|.+|+|||||+|+|++.. . .....+.++.+. ..... ...+.+|||||... +..+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~ 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-Y-SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQSL 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-C-CTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-C-CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH----------hhhh
Confidence 45799999999999999999999873 1 112222222222 22221 23689999999522 1112
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHh
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKA 234 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~ 234 (269)
.......+|++++|+|+........ ..++..+.. .+.|+++|+||+|+..... .......+ ...
T Consensus 75 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~---~~~ 148 (182)
T 1ky3_A 75 ---GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQEL---AKS 148 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHH---HHH
T ss_pred ---hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHH---HHh
Confidence 2233445999999999875322111 233333322 4679999999999964321 11111112 111
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
....+++++||++|.|+++++++|.+.+.
T Consensus 149 --~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 149 --LGDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp --TTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred --cCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 12578999999999999999999988664
No 74
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.9e-21 Score=154.64 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=103.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++........+.++++........ +..+.+|||||.... ..+...+
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 92 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAPMY 92 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhHHh
Confidence 468999999999999999999987322345566666655543332 346899999996431 1122233
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+. .+|++++|+|+........ ..++..+... +.|+++|+||+|+.+..... .+.+.+.... ...++++
T Consensus 93 ~~---~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~~---~~~~~~~ 164 (192)
T 2fg5_A 93 YR---GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAES---IGAIVVE 164 (192)
T ss_dssp HT---TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHT---TTCEEEE
T ss_pred hc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEEEE
Confidence 33 3899999999875322111 2344444432 68999999999997422211 1112222222 2478999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+||++|.|+++++++|.+.+..
T Consensus 165 ~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 165 TSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC-
T ss_pred EeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 75
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=2e-20 Score=149.84 Aligned_cols=153 Identities=18% Similarity=0.109 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEE-e-----------CCcEEEEcCCCCCCcchhHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK-L-----------GTKLCLVDLPGYGFAYAKEE 156 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~-~-----------~~~~~lvDtpG~~~~~~~~~ 156 (269)
.++|+++|.+|+|||||+|+|++.. . .....+....+.. ... . ...+.+|||||....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----- 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK-F-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF----- 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-C-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-C-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-----
Confidence 4789999999999999999999863 1 1122222222221 111 1 236899999997321
Q ss_pred HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHH-HHHHHHHHH
Q 024325 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV-ARRAMQIEE 230 (269)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~ 230 (269)
..+... ....+|++++|+|+........ ..++..+.. .+.|+++|+||+|+...... ......+.
T Consensus 84 -----~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~- 154 (195)
T 3bc1_A 84 -----RSLTTA---FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA- 154 (195)
T ss_dssp -----HHHHHH---TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-
T ss_pred -----HHHHHH---HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-
Confidence 222222 3345999999999875322222 234444443 46899999999999753221 11112221
Q ss_pred HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
... ..+++++||++|.|+++++++|.+.+.
T Consensus 155 --~~~---~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 155 --EKY---GIPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp --HHH---TCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --HHc---CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111 368999999999999999999988764
No 76
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=1.4e-20 Score=152.48 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=99.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++........+..+++........ ...+.+|||||.... ..+...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~ 77 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY----------RTITTAY 77 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh----------cchHHHh
Confidence 468999999999999999999987311112233333333332222 347899999997321 2222222
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~vi 243 (269)
...+|++++|+|+........ ..++..+.. .+.|+++|+||+|+...... ......+.+.+ ..+++
T Consensus 78 ---~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~ 148 (203)
T 1zbd_A 78 ---YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL------GFEFF 148 (203)
T ss_dssp ---GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH------TCEEE
T ss_pred ---hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC------CCeEE
Confidence 344999999999875322111 234444443 36899999999999764221 11112222211 36899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 149 EASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp ECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 77
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=2.2e-21 Score=154.32 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
..++|+++|.+|+|||||+|+|++. ......+..+.+... +...+..+.+|||||..... .+ ...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------~~---~~~ 81 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVET-LSYKNLKLNVWDLGGQTSIR----------PY---WRC 81 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEEE-EEETTEEEEEEEEC----CC----------TT---GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC-CcCccCCcCccceEE-EEECCEEEEEEECCCCHhHH----------HH---HHH
Confidence 4579999999999999999999976 334444544433222 22236779999999974321 11 112
Q ss_pred cccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
....+|++++|+|++....... ..++..+. ..+.|+++|+||+|+............+. .........+++++
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~ 159 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN--LVELKDRSWSIVAS 159 (183)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT--TTTCCSSCEEEEEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC--cccccCCceEEEEc
Confidence 2345999999999875432222 12233332 24689999999999986533322222111 00111223579999
Q ss_pred eCCCCCCHHHHHHHHHHhhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~~ 266 (269)
||++|.|+++++++|.+.+..
T Consensus 160 Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 160 SAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp BGGGTBTHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 78
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.85 E-value=2.2e-20 Score=149.67 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|+|||||+|+|++.. ....+.+++.+.. .... ...+.+|||||... +..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 88 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ 88 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC---CccccCCccceEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence 689999999999999999999872 2344444444332 1111 23488999999632 1222223
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
+ ...+|++++|+|........+ ..++..+.. .+.|+++|+||+|+............+.+. . ..++
T Consensus 89 ~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~ 159 (190)
T 3con_A 89 Y---MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS---Y---GIPF 159 (190)
T ss_dssp ----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH---H---TCCE
T ss_pred h---hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH---c---CCeE
Confidence 2 334999999999875322111 223333332 368999999999997632212222222221 1 3689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
+++||++|.|+++++++|.+.+...
T Consensus 160 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 160 IETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999877654
No 79
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=6.8e-21 Score=149.22 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=98.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||.... ..+...+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~ 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMY 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHHh
Confidence 368999999999999999999986322222333444443332222 456899999997431 1122233
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
+. .+|++++|+|++....... ..++..+.. .+.|+++|+||+|+........ ....+.... ...++++
T Consensus 76 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~~ 147 (170)
T 1r2q_A 76 YR---GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF--QEAQSYADD---NSLLFME 147 (170)
T ss_dssp HT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred cc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCH--HHHHHHHHH---cCCeEEE
Confidence 32 3899999999875322111 233333433 2678999999999965322110 111111221 2468999
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||++|.|+++++++|.+.+.
T Consensus 148 ~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 148 TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CCTTTCTTHHHHHHHHHHTSC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999988654
No 80
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=1.8e-20 Score=151.19 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=96.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C------------------------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G------------------------------ 137 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~------------------------------ 137 (269)
..++|+++|.+|+|||||+|+|++.. . .....+.+..+... ... +
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT-F-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC-C-CSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc-C-CCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 45799999999999999999999873 1 11222222222211 111 1
Q ss_pred ---------CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-hCCcE
Q 024325 138 ---------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQTKY 206 (269)
Q Consensus 138 ---------~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-~~~p~ 206 (269)
..+.+|||||.... ..+...++. .+|++++|+|++.+....+ ..++..+.. .+.|+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pi 150 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERY----------ASIVPLYYR---GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYII 150 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGC----------TTTHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred ccccCccceeEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 56899999996332 112223333 3899999999875422222 233343433 46899
Q ss_pred EEEEecCCCCCch-HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 207 QVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 207 iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++|+||+|+.... .... +.+.... ...+++++||++|.|+++++++|.+.+.
T Consensus 151 ilv~NK~D~~~~~~~~~~----~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 151 ILVANKIDKNKFQVDILE----VQKYAQD---NNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp EEEEECTTCC-CCSCHHH----HHHHHHH---TTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECCCcccccCCHHH----HHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999932211 1122 2222222 2468999999999999999999987664
No 81
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=2.6e-21 Score=155.78 Aligned_cols=156 Identities=13% Similarity=-0.039 Sum_probs=98.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ....+.+|+.+.. .... ...+.+|||||.... ..+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~- 88 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE---IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY----------DRLR- 88 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTG-
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC---CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH----------HHHh-
Confidence 4689999999999999999999873 2344444443321 1111 334689999996321 1111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC-
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP- 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (269)
......+|++++|+|......... ..++..+... +.|+++|+||+|+..............+..... ..+
T Consensus 89 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~ 163 (194)
T 3reg_A 89 --PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---GCVA 163 (194)
T ss_dssp --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH---TCSC
T ss_pred --HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc---CCCE
Confidence 122345999999999875322222 2344444443 689999999999975311100011111112211 344
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++|.|+++++++|.+.+..
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999887644
No 82
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=1.5e-20 Score=147.55 Aligned_cols=154 Identities=16% Similarity=0.081 Sum_probs=95.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......+.++.+.. .... ...+.+|||||.... ..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~-- 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK--FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF----------HAL-- 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC--CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC--CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh----------hhh--
Confidence 4689999999999999999999873 22223333333322 2222 235889999996321 111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.......+|++++|+|+........ ..++..+.. .+.|+++|+||+|+.+...... +...+.... ...++
T Consensus 72 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 145 (170)
T 1z08_A 72 -GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI--QEAESYAES---VGAKH 145 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred -HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCH--HHHHHHHHH---cCCeE
Confidence 1223345999999999875322111 223333332 4689999999999975322110 111122222 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 146 YHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 83
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.85 E-value=7.4e-22 Score=176.99 Aligned_cols=158 Identities=25% Similarity=0.271 Sum_probs=107.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CC-cEEEEcCCCCCCcchh--HHHHHHHH
Q 024325 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAK--EEVKDAWE 162 (269)
Q Consensus 89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~-~~~lvDtpG~~~~~~~--~~~~~~~~ 162 (269)
....++|+++|.+|+|||||+|+|++. ....+++.+++|.+...... +. .+.+|||||+.+.... ....
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~---- 105 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVE---- 105 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHH----
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHH----
Confidence 345679999999999999999999998 55678889999988754332 33 7999999998653211 1111
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
........+|++++|+|+ +....+..++..+...++|+++|+||+|+...... ...+. + ......++
T Consensus 106 ----~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~----l--~~~~g~~v 172 (423)
T 3qq5_A 106 ----KARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGL----Y--ESRYEAKV 172 (423)
T ss_dssp ----HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHH----S--SCCTTCCC
T ss_pred ----HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHH----H--HHHcCCCE
Confidence 111222349999999998 56677788888898889999999999999876543 11111 1 11235789
Q ss_pred EEeeCCCCCCHHHHHHHHHHhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++||++|.|+++++++|.+.+
T Consensus 173 ~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 173 LLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp CCCSSCCTTSTTTHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 9999999999999999999877
No 84
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=6e-20 Score=161.96 Aligned_cols=161 Identities=22% Similarity=0.254 Sum_probs=111.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchh--HHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAK--EEVKDAWEEL 164 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~--~~~~~~~~~~ 164 (269)
...++|+++|++|+|||||+|+|++.. ..+++.+++|.+...... +..+.+|||||+...... .... .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~-- 237 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE---K-- 237 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH---H--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH---H--
Confidence 456899999999999999999999983 456778888887754432 456899999998653211 1111 0
Q ss_pred HHHHHhcccccceEEEEEeCCCCC--Ccc-hHHHHHHHHh-h-CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGV--KPR-DHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~--~~~-~~~~~~~l~~-~-~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
.........+|.+++|+|++... ... ...++..+.. . +.|+++|+||+|+....+....... ... ..
T Consensus 238 -~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~----~~~---~~ 309 (357)
T 2e87_A 238 -QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKF----VKE---KG 309 (357)
T ss_dssp -HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHH----HHH---TT
T ss_pred -HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHH----HHh---cC
Confidence 11112223489999999987543 222 2344554443 2 7999999999999876554322222 211 24
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+++++||++|+|+++|+++|.+.+.
T Consensus 310 ~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 310 LNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp CCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 78999999999999999999988764
No 85
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.4e-20 Score=150.26 Aligned_cols=156 Identities=15% Similarity=0.019 Sum_probs=96.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
..++|+++|.+|+|||||+|+|++........+..+.+....... ....+.+|||||.... ..+...+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF----------PAMQRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC----------HHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh----------HHHHHHh
Confidence 457999999999999999999998631111111111111111111 1346899999996432 1222233
Q ss_pred HhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
+.. +|++++|+|.+...... ...++..+.. .+.|+++|+||+|+............+... . ..++
T Consensus 77 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~ 147 (199)
T 2gf0_A 77 ISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQE---W---KCAF 147 (199)
T ss_dssp HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHH---H---TCEE
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHH---h---CCeE
Confidence 322 89999999987532211 1233333332 368999999999997632211212222211 1 3689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 148 METSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp EECBTTTTBSHHHHHHHHHHHCS
T ss_pred EEEecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 86
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.85 E-value=2e-20 Score=151.10 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...++|+++|.+|+|||||+|++.+............++...... .....+.+|||||....... .|. ..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~~~--~~ 90 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP-----TFD--YE 90 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT-----TCC--HH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh-----hhh--cc
Confidence 456799999999999999999999863222111111122222221 12467999999997432110 000 02
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHH----HHHHHHHhcC-
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAM----QIEESLKANN- 236 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~----~~~~~~~~~~- 236 (269)
.|+.. +|++++|+|+..........+..++.. .+.|+++|+||+|+.+......... ...+.+....
T Consensus 91 ~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 91 MIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 23332 999999999986532333444445443 3789999999999987543221111 1122222211
Q ss_pred -CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 237 -SLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 237 -~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
....+++++||++ .|++++++.|.+.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2356899999999 99999999998754
No 87
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=6.3e-21 Score=152.89 Aligned_cols=155 Identities=14% Similarity=0.074 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++........+..+++........ ...+.+|||||...... +.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~--- 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----------IT--- 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC----------SG---
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh----------hH---
Confidence 469999999999999999999987311122233344433332222 34689999999743211 11
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~vi 243 (269)
......+|++++|+|+........ ..++..+... +.|+++|+||+|+...... ......+.+. . ..+++
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~---~~~~~ 162 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD---L---GFEFF 162 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH---H---TCEEE
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHH---c---CCeEE
Confidence 122334999999999875322111 2344555443 6899999999999753221 1111222221 1 36899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 163 ~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 163 EASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 88
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.85 E-value=1.8e-20 Score=149.17 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ....+++++.+.. +...+ ..+.+|||||.... ..+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~ 84 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD 84 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----------HHHHH
Confidence 4689999999999999999999873 3344444444332 11122 36899999997542 12222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.++.. +|++++|+|......... ..++..+.. .++|+++|+||+|+.+..... ...+.+.... ...+
T Consensus 85 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~ 156 (187)
T 2a9k_A 85 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQ---WNVN 156 (187)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCE
T ss_pred HHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHHHHHHH---cCCe
Confidence 33332 899999999874321111 122233322 368999999999997532211 1112222222 2468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
++++||++|.|+++++++|.+.+...
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 157 YVETSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998877543
No 89
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.85 E-value=1.9e-20 Score=150.49 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=98.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCC-------CCCceeEeeEEE--------eCCcEEEEcCCCCCCcchhHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFK--------LGTKLCLVDLPGYGFAYAKEE 156 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-------~~gtt~~~~~~~--------~~~~~~lvDtpG~~~~~~~~~ 156 (269)
.++|+++|.+|+|||||+|.+.+... ....+ ....|....+.. ....+.+|||||....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----- 87 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY----- 87 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC-----
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH-----
Confidence 46899999999999999998887632 21111 011232222221 1235899999997432
Q ss_pred HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchH----HHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHH
Q 024325 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQ 227 (269)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~ 227 (269)
..+...++ ..+|++++|+|+..+....+. .+..++.. .+.|+++|+||+|+.......+.
T Consensus 88 -----~~~~~~~~---~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~--- 156 (198)
T 3t1o_A 88 -----NASRKLIL---RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMV--- 156 (198)
T ss_dssp -----SHHHHHHT---TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHH---
T ss_pred -----HHHHHHHH---hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHH---
Confidence 12222333 349999999999743222222 23334433 46899999999999765333222
Q ss_pred HHHHHHhcCCCCC-CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 228 IEESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 228 ~~~~~~~~~~~~~-~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+... .... +++++||++|.|+++++++|.+.+.
T Consensus 157 -~~~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 157 -RAVVD---PEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -HHHHC---TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred -HHHHH---hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 22222 2245 8999999999999999999988764
No 90
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.85 E-value=1.9e-21 Score=170.00 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=110.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.+.|+++|.+|||||||+|+|++.. ..+++++++|.+..... . +..+.+|||||+.+... .+..+...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~------~~~~l~~~ 229 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH------QGVGLGHQ 229 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT------CTTTTHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCccccc------ccchhHHH
Confidence 4689999999999999999999873 45688898888765332 2 26799999999743111 01122334
Q ss_pred HHhcccccceEEEEEeCCCC--CCc-ch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWG--VKP-RD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~--~~~-~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 238 (269)
|++....++++++|+|++.. ..+ .+ ..++..+.. ..+|+++|+||+|+....+ ..+.+.+. +. .
T Consensus 230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~---l~-~ 302 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEK---LT-D 302 (342)
T ss_dssp HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHH---CC-S
T ss_pred HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHH---hh-c
Confidence 44445559999999999752 111 11 234455554 3689999999999986432 12222222 11 1
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
..+++++||++++|+++|+++|.+.+..
T Consensus 303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 303 DYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 2679999999999999999999988754
No 91
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.85 E-value=1.9e-20 Score=148.98 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=96.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+|+|++.. ....+.+++.+.. .... + ..+.+|||||..... .+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~ 83 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----------AMR 83 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----------SSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----------HHH
Confidence 45789999999999999999999862 3333333433321 1122 2 336679999964321 111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHH----HhhCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV 239 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 239 (269)
..++.. +|++++|+|......... ..++..+ ...+.|+++|+||+|+....... .....+.+ .. .
T Consensus 84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~---~~---~ 154 (183)
T 3kkq_A 84 EQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT---KY---N 154 (183)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH---HH---T
T ss_pred HHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH---Hh---C
Confidence 222222 899999999875321111 2233333 22468999999999997532211 11122222 11 3
Q ss_pred CCeEEeeCC-CCCCHHHHHHHHHHhhh
Q 024325 240 QPVMMVSSK-SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 240 ~~vi~vSa~-~g~gi~~L~~~i~~~~~ 265 (269)
.+++++||+ +|.|+++++++|.+.+.
T Consensus 155 ~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 155 IPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp CCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred CeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 789999999 99999999999998765
No 92
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.85 E-value=6e-21 Score=155.21 Aligned_cols=156 Identities=14% Similarity=0.009 Sum_probs=100.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeC--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||++++++. .....+.+++.+.... ..+ ..+.+|||||.... ..+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~- 94 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN---AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRL- 94 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS---CCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG----------TTT-
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC---CCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh----------HHH-
Confidence 3579999999999999999999976 2345555565554321 123 34569999997321 111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHH----------HHHHH
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAM----------QIEES 231 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~----------~~~~~ 231 (269)
.......+|++++|+|+......... .++..+... +.|+++|+||+|+........... .....
T Consensus 95 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 4gzl_A 95 --RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
T ss_dssp --GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHH
Confidence 11233459999999998753322222 355555554 789999999999987644222111 11111
Q ss_pred HHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 232 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.... ...+++++||++|+|+++++++|.+.+
T Consensus 173 ~~~~--~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 173 AKEI--GAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHT--TCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHhc--CCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1111 134699999999999999999998754
No 93
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=1.5e-21 Score=155.22 Aligned_cols=155 Identities=14% Similarity=0.021 Sum_probs=96.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+|+|++.. ....+++|+.+.. ....+ ..+.+|||||..... .+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ---FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS----------IFP 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTC----------CCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC---CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhh----------HHH
Confidence 35789999999999999999999762 3444444443322 22222 457899999975421 011
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHH----HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
.. ....+|++++|+|......... ..++..+ ...++|+++|+||+|+........ ......... ...
T Consensus 72 ~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~ 143 (181)
T 3t5g_A 72 QT---YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--EEGKALAES---WNA 143 (181)
T ss_dssp GG---GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTC
T ss_pred HH---HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--HHHHHHHHH---hCC
Confidence 11 2234899999999874211111 1222222 223689999999999965432211 111112222 246
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++++||++|.|+++++++|.+.+..
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 144 AFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp EEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887653
No 94
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=8.5e-21 Score=148.51 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=96.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. . .....+.++.+. ..... ...+.+|||||.... ..+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~ 72 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI-F-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITK 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC-C-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCH
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC-C-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH----------HHHHH
Confidence 4689999999999999999999873 2 112222222222 11221 346899999996321 11122
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v 242 (269)
.++. .+|++++|+|++....... ..++..+.. .+.|+++|+||+|+...... ......+.+ .. ..++
T Consensus 73 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~~ 143 (168)
T 1z2a_A 73 AYYR---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK---RL---KLRF 143 (168)
T ss_dssp HHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHH---HH---TCEE
T ss_pred HHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHH---Hc---CCeE
Confidence 2332 3899999999875321111 233333332 37899999999999753221 111122221 11 4689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 95
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=7e-21 Score=153.12 Aligned_cols=153 Identities=18% Similarity=0.133 Sum_probs=98.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
..+|+++|.+|+|||||+|+|++. ......+..+.+.. .+...+..+.+|||||..... .+.. ..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~----------~~~~---~~ 87 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQAR----------RLWK---DY 87 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS-CCCCCCCCCSCEEE-EEEETTEEEEEEECCCSGGGT----------TSGG---GG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC-CCCccccCCCCCeE-EEEECCEEEEEEECCCCHHHH----------HHHH---HH
Confidence 358999999999999999999987 33434444444322 222336789999999974321 1111 22
Q ss_pred ccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc---------CC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN---------NS 237 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~---------~~ 237 (269)
...+|++++|+|+........ ..++..+. ..+.|+++|+||+|+.......+ +.+.+... ..
T Consensus 88 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 88 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE----LRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH----HHHHTTCSSCCC---CCSS
T ss_pred HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHH----HHHHhCCcccccccccccc
Confidence 345899999999985422221 22233332 24689999999999976332222 22222111 11
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
...+++++||++|.|+++++++|.+.
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 24579999999999999999999764
No 96
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=151.60 Aligned_cols=155 Identities=18% Similarity=0.104 Sum_probs=98.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||.... ..+...+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------hhhhHHH
Confidence 368999999999999999999987311122233333333333222 356899999997432 1112233
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
+. .+|++++|+|+........ ..++..+.. .++|+++|+||+|+......... ..+.... ...+++
T Consensus 85 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~~---~~~~~~ 155 (195)
T 1x3s_A 85 YR---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNE---GLKFARK---HSMLFI 155 (195)
T ss_dssp HT---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHH---HHHHHHH---TTCEEE
T ss_pred hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHH---HHHHHHH---cCCEEE
Confidence 32 3899999999875322211 233444433 35899999999999643211111 1111221 246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 97
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=1.6e-20 Score=148.48 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|+|||||+|+|++.. ......+.++.+... ... ...+.+|||||.... ..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~ 82 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLIPS 82 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHHHH
Confidence 689999999999999999999763 223334444444322 222 246899999996432 111222
Q ss_pred HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
++. .+|++++|+|+....... ...++..+.. .+.|+++|+||+|+.+...... .......... ..+++
T Consensus 83 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~---~~~~~ 154 (179)
T 2y8e_A 83 YIR---DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKEL---NVMFI 154 (179)
T ss_dssp HHH---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH--HHHHHHHHHH---TCEEE
T ss_pred Hhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH--HHHHHHHHHc---CCeEE
Confidence 222 389999999987532111 1233333332 3689999999999975432211 0111111111 46899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 155 ~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 155 ETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp EEBTTTTBSHHHHHHHHHHTCC
T ss_pred EEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 98
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=3.3e-20 Score=150.71 Aligned_cols=153 Identities=20% Similarity=0.167 Sum_probs=97.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......+.++.+.. .... ...+.+|||||... +..+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~- 92 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSIT- 92 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH-
Confidence 4689999999999999999999873 22233333333432 2222 23689999999632 12222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (269)
......+|++++|+|++....... ..++..+.. .+.|+++|+||+|+...... ......+.. .. ..+
T Consensus 93 --~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---~~---~~~ 164 (201)
T 2ew1_A 93 --QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE---AQ---DMY 164 (201)
T ss_dssp --GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH---HH---TCC
T ss_pred --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH---Hc---CCE
Confidence 233445999999999875322111 234444433 36899999999999743221 111111111 11 468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++++|.+.+.
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 165 YLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 99
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4.7e-21 Score=153.98 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=100.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+|||||+|+|++........+..+++....... .+..+.+|||||.. .+..+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 91 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTITTA 91 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHHH
Confidence 357999999999999999999998631111122223333333332 24468999999941 22333344
Q ss_pred HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v 242 (269)
++. .+|++++|+|........ ...++..+.. .+.|+++|+||+|+...... ......+.... ..++
T Consensus 92 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~ 162 (191)
T 3dz8_A 92 YYR---GAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL------GFDF 162 (191)
T ss_dssp HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEE
T ss_pred HHc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc------CCeE
Confidence 443 399999999987532111 1344455544 46899999999998643221 11112222211 4689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 163 ~~~Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 163 FEASAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 100
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.84 E-value=3.4e-20 Score=145.42 Aligned_cols=157 Identities=14% Similarity=0.025 Sum_probs=92.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--E-E--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-K--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~-~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ...... +.++.+... . . ....+.+|||||..... ..+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQ-GDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG---------GWLQD 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-----------------C
T ss_pred cEEEEEECCCCCCHHHHHHHHHhcc-Cccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccc---------hhhhh
Confidence 3689999999999999999998762 222222 222222211 1 1 13468899999974321 01112
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.++.. +|++++|+|.+....... ..++..+.. .++|+++|+||+|+.+...... ......... ...+
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~ 142 (169)
T 3q85_A 71 HCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--EEGRHLAGT---LSCK 142 (169)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCE
T ss_pred hhhcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH--HHHHHHHHH---cCCc
Confidence 22222 899999999875321111 233333333 2689999999999974322111 111111121 2468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~~ 267 (269)
++++||++|.|+++++++|.+.+...
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 143 HIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEecCccCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999887653
No 101
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=7.8e-21 Score=154.24 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=97.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+|+|++.. . .....+.++.+.. .... ...+.+|||||.... ..+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-F-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSLG 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-C-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-C-CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHhH
Confidence 34789999999999999999999873 2 2222333333432 2222 246899999996321 0111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 237 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 237 (269)
. .....+|++++|+|+..+..... ..++..+.. .+.|+++|+||+|+............+ ... .
T Consensus 75 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~~--~ 146 (207)
T 1vg8_A 75 V---AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW---CYS--K 146 (207)
T ss_dssp C---GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH---HHH--T
T ss_pred H---HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHH---HHh--c
Confidence 1 12234899999999875322111 223333322 368999999999998432222212211 111 2
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
...+++++||++|.|+++++++|.+.+.
T Consensus 147 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 147 NNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2578999999999999999999988764
No 102
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=2.7e-20 Score=156.04 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=110.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCC-CCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..++|+++|.+|+|||||+|+|++. .....+.. .++|..+.. ...+..+.+|||||+.+...... .+....+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~-~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ-RRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKT-DPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS-CCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHH-STTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC-CCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcH-HHHHHHHHH
Confidence 3468999999999999999999998 43333322 246666532 23367899999999975422110 111233444
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh------CCcEEEEEecCCCCCchHHHHHH-----HHHHHHHHhc
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS------QTKYQVVLTKTDTVFPIDVARRA-----MQIEESLKAN 235 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~------~~p~iiv~NK~Dl~~~~~~~~~~-----~~~~~~~~~~ 235 (269)
.+......+|++++|+|+.. +...+..+++.+... +.|+++|.||+|+.... ..... ..++.....+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHc
Confidence 44445567999999999974 666677777777663 68999999999997642 22222 2244444433
Q ss_pred CCCCCCeEEeeCCC-----CCCHHHHHHHHHHhhhh
Q 024325 236 NSLVQPVMMVSSKS-----GAGIRSLRTVLSKIARF 266 (269)
Q Consensus 236 ~~~~~~vi~vSa~~-----g~gi~~L~~~i~~~~~~ 266 (269)
+..++.+++.. +.|+++|++.|.+.+..
T Consensus 176 ---g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 176 ---GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp ---TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 34566666554 68999999999988764
No 103
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.84 E-value=3.1e-21 Score=158.14 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe-C---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~-~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..++|+++|.+|+|||||+|+|++...........+++........ + ..+.+|||||..... .+..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA----------VLKD 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS----------CCCH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc----------hHHH
Confidence 3468999999999999999999976322223344444433333322 2 458999999964321 1112
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.++. .+|++++|+|+..+....+ ..++..+.. .+.|+++|+||+|+........ ..... .......++
T Consensus 80 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~---~~~~~~~~~ 151 (218)
T 4djt_A 80 VYYI---GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK--KLVME---VLKGKNYEY 151 (218)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH--HHHHH---HTTTCCCEE
T ss_pred HHhh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHH---HHHHcCCcE
Confidence 2222 3999999999985433222 233333333 3689999999999976422211 11111 112335789
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
+++||++|.|+++++++|.+.+..
T Consensus 152 ~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 152 FEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp EEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999987653
No 104
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.84 E-value=4.4e-21 Score=152.39 Aligned_cols=156 Identities=17% Similarity=0.029 Sum_probs=92.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+|++++.. ....+.+|+.+.. .......+.+|||||..... .+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------RLR 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC---CC----------CBCCCC-------CEEECCCC-CTTT----------TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh----------hhH
Confidence 35799999999999999999999872 2344444443321 11123456799999974321 111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHH--------HHHHHHHHHH
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVAR--------RAMQIEESLK 233 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~--------~~~~~~~~~~ 233 (269)
. .....+|++++|+|+......... .++..+... +.|+++|+||+|+........ ......+...
T Consensus 74 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 150 (182)
T 3bwd_D 74 P---LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150 (182)
T ss_dssp G---GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred H---hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence 1 223348999999998753222221 344555543 789999999999976543200 0111111111
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
... ..+++++||++|.|+++++++|.+.+
T Consensus 151 ~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 151 LIG--APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcC--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 111 24899999999999999999998765
No 105
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=1.3e-20 Score=149.96 Aligned_cols=156 Identities=13% Similarity=-0.015 Sum_probs=99.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ....+.+|+.+.. .... ...+.+|||||.... ..+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 71 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRP 71 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS---CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC---CCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH----------HHHHH
Confidence 3689999999999999999999762 2333333443321 1111 345779999997321 11111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~ 232 (269)
.....+|++++|+|++.+...... .++..+... +.|+++|+||+|+.+........ .......
T Consensus 72 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (186)
T 1mh1_A 72 ---LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 148 (186)
T ss_dssp ---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred ---HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence 223459999999998753222222 345555544 78999999999997653322111 1111111
Q ss_pred HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
... ...+++++||++|.|+++++++|.+.+.
T Consensus 149 ~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 149 KEI--GAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHT--TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred Hhc--CCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 111 1248999999999999999999988764
No 106
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=2.5e-20 Score=147.40 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=96.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-eC---CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.++|+++|.+|+|||||+|+|++........+..+......... .+ ..+.+|||||..... .+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~ 75 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----------KMLDK 75 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----------TTHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----------chhhH
Confidence 46899999999999999999998731111111111111111122 12 579999999975321 11223
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCc-EEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTK-YQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLV 239 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p-~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 239 (269)
++. .+|++++|+|++....... ..++..+.. ...| +++|+||+|+.+.... ......+.+ .. .
T Consensus 76 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~ 146 (178)
T 2hxs_A 76 YIY---GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ---EN---G 146 (178)
T ss_dssp HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH---HH---T
T ss_pred HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH---Hc---C
Confidence 333 3999999999875322211 234444433 1556 7999999999753211 111112211 11 4
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
.+++++||++|.|+++++++|.+.+..
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 147 FSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999887654
No 107
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=2.5e-20 Score=148.56 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=98.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......+.++.+.. ....+ ..+.+|||||.... ..+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~-- 75 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK--FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF----------RSV-- 75 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHH--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH----------HHH--
Confidence 4789999999999999999999873 22233344443432 22222 47899999996321 122
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.......+|++++|+|++....... ..++..+.. .+.|+++|+||+|+........ ......... ...++
T Consensus 76 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 149 (186)
T 2bme_A 76 -TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEASRFAQE---NELMF 149 (186)
T ss_dssp -HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred -HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHHHHHHH---cCCEE
Confidence 2233445999999999875322211 233333332 4689999999999964322111 111111221 24789
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 150 ~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 150 LETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 108
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.84 E-value=1.7e-20 Score=150.70 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=96.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..+|+++|.+|+|||||+|+|++.. .... .+..+++........+ ..+.+|||||.... ..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 89 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITRS 89 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC-CCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh----------hhhHHH
Confidence 4689999999999999999999873 2211 1122222222222222 47899999996321 111122
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v 242 (269)
++. .+|++++|+|+........ ..++..+.. .+.|+++|+||+|+...... ......+. ... ..++
T Consensus 90 ~~~---~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~---~~~~ 160 (191)
T 2a5j_A 90 YYR---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFA---REH---GLIF 160 (191)
T ss_dssp HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH---HHH---TCEE
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHH---HHc---CCEE
Confidence 332 3999999999875322221 234444443 26899999999999653221 11111111 111 4689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 161 METSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 109
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.84 E-value=3e-21 Score=183.41 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=110.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc--------------eeEee------EE----------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--------------TQTIN------FF---------------- 134 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt--------------t~~~~------~~---------------- 134 (269)
..++|+++|.+|+|||||+|+|+|. ....++..|+| |.+.. ..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3578999999999999999999998 66778888877 33210 00
Q ss_pred -------------------Ee-----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc
Q 024325 135 -------------------KL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190 (269)
Q Consensus 135 -------------------~~-----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~ 190 (269)
.. ...+.+|||||+..... .......|+ ..+|++++|+|++.+.+.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i---~~aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYV---NNCHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHH---HSSSEEEEEEETTSTTCH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHH---HhCCEEEEEEeCCCccch
Confidence 00 04699999999754211 112222333 349999999999887776
Q ss_pred chHHHHH-HHHhhCCcEEEEEecCCCCCch--------HHHHHHHHHH----HHHHhcCC------CCCCeEEeeCC---
Q 024325 191 RDHELIS-LMERSQTKYQVVLTKTDTVFPI--------DVARRAMQIE----ESLKANNS------LVQPVMMVSSK--- 248 (269)
Q Consensus 191 ~~~~~~~-~l~~~~~p~iiv~NK~Dl~~~~--------~~~~~~~~~~----~~~~~~~~------~~~~vi~vSa~--- 248 (269)
.+..++. .+...+.|+++|+||+|+.... +.......+. ..+..... ...++++|||+
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al 296 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQAL 296 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHH
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHH
Confidence 6665553 4555578999999999997543 2222222222 22222111 23579999999
Q ss_pred -----------CCCCHHHHHHHHHHhhh
Q 024325 249 -----------SGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 249 -----------~g~gi~~L~~~i~~~~~ 265 (269)
+|.|+++|++.|.+.+.
T Consensus 297 ~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 297 RRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988764
No 110
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=2.3e-20 Score=147.92 Aligned_cols=149 Identities=9% Similarity=0.036 Sum_probs=93.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
..+|+++|.+|+|||||+|+|++. ......+..+.......... ...+.+|||||... ..|+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------~~~~ 70 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG-SYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------AKFS 70 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS-CCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---------------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch---------------hHHH
Confidence 468999999999999999999987 32222222222211111111 24588999999743 1122
Q ss_pred hcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCC--c--hHHHHHHHHHHHHHHhcCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF--P--IDVARRAMQIEESLKANNSL 238 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~--~--~~~~~~~~~~~~~~~~~~~~ 238 (269)
. .+|++++|+|......... ..+++++.. .++|+++|+||+|+.. . ...... ..+ .... .
T Consensus 71 ~---~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~---~~~~--~ 141 (178)
T 2iwr_A 71 G---WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RAL---XADM--K 141 (178)
T ss_dssp H---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH-HHH---HHHH--S
T ss_pred H---hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH-HHH---HHhh--c
Confidence 2 2899999999875322222 122223332 2689999999999942 1 111111 111 1111 1
Q ss_pred CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 239 VQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
..+++++||++|.|+++++++|.+.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 142 RCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp SEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 368999999999999999999987664
No 111
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=149.69 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.++|+++|.+|+|||||+|+|++.. .... .+..+++....... .+..+.+|||||..... .+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 93 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE-FSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR----------AITSA 93 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC-CCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC----------TTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHH
Confidence 4689999999999999999999873 2221 12223322222222 24568999999985421 12223
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
++. .+|++++|+|+........ ..++..+.. .+.|+++|+||+|+........ ......... ...+++
T Consensus 94 ~~~---~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~ 165 (193)
T 2oil_A 94 YYR---GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPT--EEARMFAEN---NGLLFL 165 (193)
T ss_dssp HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEEE
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCH--HHHHHHHHH---cCCEEE
Confidence 333 3899999999875322111 234444443 3689999999999975322110 111112221 246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 166 ~~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 166 ETSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp EECTTTCTTHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 112
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=1.5e-20 Score=166.34 Aligned_cols=147 Identities=17% Similarity=0.244 Sum_probs=108.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
+|+++|.+|+|||||+++|+.. |+|.+..+. ..+..+.+|||||+.+. ......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f-------------~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKT-------------LKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTC-------------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHH-------------HHHHHH
Confidence 8999999999999999999932 344444332 23667999999998432 112222
Q ss_pred cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcE-EEEEe-cCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE--ee
Q 024325 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT-KTDTVFPIDVARRAMQIEESLKANNSLVQPVMM--VS 246 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~-iiv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~--vS 246 (269)
....+|++++|+| ..+...+..+.+..+...++|. ++|+| |+|+ ++.........+.+.+........|+++ +|
T Consensus 80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 2344999999999 8788877888888888888998 99999 9999 6544444444555544333223478999 99
Q ss_pred CCC---CCCHHHHHHHHHHhhh
Q 024325 247 SKS---GAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~---g~gi~~L~~~i~~~~~ 265 (269)
|++ |.|+++|++.|.+.+.
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhcc
Confidence 999 9999999999987764
No 113
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=1.9e-20 Score=150.14 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=95.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHH-HHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWE-ELVK 166 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~-~~~~ 166 (269)
..++|+++|.+|+|||||+|+|++........+..+++........ ...+.+|||||... +. .+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhhH
Confidence 3469999999999999999999986311111222222222222222 24789999999621 12 2333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQ 240 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~ 240 (269)
.++. .+|++++|+|+........ ..++..+.. .+.|+++|+||+|+....+. ....+.+ ... ...
T Consensus 89 ~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~---~~~---~~~ 159 (189)
T 1z06_A 89 HYYR---NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF---ADT---HSM 159 (189)
T ss_dssp HHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH---HHH---TTC
T ss_pred HHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHH---HHH---cCC
Confidence 4433 4999999999875322111 233333332 36899999999999654221 1111111 111 246
Q ss_pred CeEEeeCCCC---CCHHHHHHHHHHhhh
Q 024325 241 PVMMVSSKSG---AGIRSLRTVLSKIAR 265 (269)
Q Consensus 241 ~vi~vSa~~g---~gi~~L~~~i~~~~~ 265 (269)
+++++||++| .|+++++++|.+.+.
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 8999999999 999999999977653
No 114
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.84 E-value=4.4e-20 Score=149.72 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=95.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. .. ....+.++.+. .....+ ..+.+|||||.... ..+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 96 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA-FS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF----------RTITQ 96 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC-C-----------CEEEEEEEETTEEEEEEEECCTTCGGG----------HHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC-CC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH----------HHHHH
Confidence 4689999999999999999999873 21 11122222222 122222 47899999997321 22333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC-C
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-P 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~ 241 (269)
.++. .+|++++|+|+........ ..++..+.. .+.|+++|+||+|+....... ...+.+..... .. +
T Consensus 97 ~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~---~~~~ 168 (201)
T 2hup_A 97 SYYR---SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS--LAEAQSLAEHY---DILC 168 (201)
T ss_dssp HHHT---TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHT---TCSE
T ss_pred HHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC--HHHHHHHHHHc---CCCE
Confidence 4443 3999999999874322111 234444443 358999999999997532111 01112222221 34 8
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++++|.+.+.
T Consensus 169 ~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 169 AIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 115
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=5.7e-20 Score=150.51 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..+|+++|.+|+|||||+|+|++.. ....+.+|+.+.. .... ...+.+|||||... +..+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~ 100 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGA---FPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD----------YDRLRP 100 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC---CCCCCCCccceeEEEEEEECCEEEEEEEEECCCchh----------hhHHHH
Confidence 4689999999999999999999862 2233333333221 1111 23689999999632 122222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~ 232 (269)
.++ ..+|++++|+|.+....... ..++..+... ++|+++|+||+|+.......... ....+..
T Consensus 101 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (214)
T 2j1l_A 101 LFY---PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA 177 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHh---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHH
Confidence 333 34999999999875322211 1244444432 68999999999998764332211 1112222
Q ss_pred HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
... ...+++++||++|.|+++++++|.+.+..
T Consensus 178 ~~~--~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 178 RSV--GAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHT--TCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred Hhc--CCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 221 12389999999999999999999887653
No 116
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=6.5e-21 Score=151.73 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=77.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......|+++.+... ... + ..+.+|||||.... ..+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~- 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------RTIT- 74 (183)
T ss_dssp EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------C-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh----------hhhH-
Confidence 4689999999999999999999762 222223334444322 222 2 56899999996321 1111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (269)
......+|++++|+|++....... ..++..+.. .+.|+++|+||+|+...... ......+.+ .. ..+
T Consensus 75 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~---~~---~~~ 146 (183)
T 2fu5_C 75 --TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL---DY---GIK 146 (183)
T ss_dssp --CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH---HH---TCE
T ss_pred --HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHH---Hc---CCe
Confidence 122345999999999875322111 234444443 36899999999999753221 111112211 11 368
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++++|.+.+.
T Consensus 147 ~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 147 FMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp EEECCC---CCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987664
No 117
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=3.3e-20 Score=150.72 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......++++.+.. ....+ ..+.+|||||..... .+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 75 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT--YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR----------TITS 75 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH----------HHHH
Confidence 4689999999999999999999873 22223333333332 22222 368999999974321 1111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.....+|++++|+|+........ ..++..+.. .+.|+++|+||+|+........ ......... ...++
T Consensus 76 ---~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 147 (206)
T 2bcg_Y 76 ---SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVAKEFADA---NKMPF 147 (206)
T ss_dssp ---GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTCCE
T ss_pred ---HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHH---cCCeE
Confidence 12334899999999875322211 233444433 3589999999999976422111 111111111 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 148 ~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 148 LETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 118
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.83 E-value=3e-20 Score=148.67 Aligned_cols=153 Identities=8% Similarity=0.001 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...+|+++|.+|+|||||+|++++.. . ...+..|..+. .....+ ..+.+|||||.... .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~---- 81 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT-Y--VQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEL----------Q---- 81 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS-C--CCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCH----------H----
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-C--CCCcCCCcceEEEEEEECCEEEEEEEEECCCChhh----------h----
Confidence 45799999999999999999999873 1 22222232222 111112 45778999997431 1
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
++. .+|++++|+|.+....... ..++..+.. .+.|+++|+||+|+..............+..... ...+
T Consensus 82 -~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~--~~~~ 155 (184)
T 3ihw_A 82 -FAA---WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL--KRCT 155 (184)
T ss_dssp -HHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT--TTCE
T ss_pred -eec---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc--CCCe
Confidence 222 2899999999875322222 334444544 3579999999999952111000001112222221 1368
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++|.|+++++++|.+.+..
T Consensus 156 ~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 156 YYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 119
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=8.8e-21 Score=153.42 Aligned_cols=159 Identities=11% Similarity=-0.012 Sum_probs=96.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
...++|+++|.+|+|||||+|+|++.. +...+++|+.+.. +...+ ..+.+|||||..... .+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~ 84 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD----------KL 84 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCS----------SS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHH----------HH
Confidence 345799999999999999999999872 4455555654432 11122 357799999974321 11
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHHH----------HHHHHH
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIEE 230 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~ 230 (269)
... ....+|++++|+|++......+. .++..+... +.|+++|+||+|+......... ......
T Consensus 85 ~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 161 (201)
T 2q3h_A 85 RPL---CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL 161 (201)
T ss_dssp GGG---GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hHh---hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH
Confidence 111 23348999999998753222221 344445443 7899999999999754211000 011111
Q ss_pred HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
..... ...+++++||++|.|+++++++|.+.+..
T Consensus 162 ~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 162 LAEEI--KAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHhc--CCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 11111 12479999999999999999999887643
No 120
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=4.3e-21 Score=155.52 Aligned_cols=156 Identities=15% Similarity=0.063 Sum_probs=97.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--E---EeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F---KLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (269)
Q Consensus 89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 163 (269)
....++|+++|.+|+|||||+|+|++.. . ...+.+++.+... . ..+..+.+|||||......
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------- 87 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGE-F--SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI---------- 87 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSC-C--CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC----------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCC-C--CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH----------
Confidence 3456799999999999999999999873 2 2333334333211 1 1245679999999743211
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCC
Q 024325 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNS 237 (269)
Q Consensus 164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 237 (269)
+.. .....+|++++|+|......... ..++..+.. .++|+++|+||+|+........ ....+....
T Consensus 88 ~~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----- 159 (201)
T 3oes_A 88 LPY---SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW----- 159 (201)
T ss_dssp CCG---GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-----
T ss_pred HHH---HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh-----
Confidence 111 12334999999999874221111 223333332 3689999999999975432211 111222111
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
..+++++||++|.|+++++++|.+.+..
T Consensus 160 -~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 160 -GATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp -TCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999887654
No 121
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=152.00 Aligned_cols=156 Identities=12% Similarity=0.038 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-Eee-EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~-~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
++|+++|.+|+|||||+|+|++.. . ...+.+++. +.. .... ...+.+|||||..... .+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~- 91 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE-F--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD----------RLRP- 91 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-C--C-------CCEEEEEEEETTEEEEEEEEECTTCTTCT----------TTGG-
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC-C--CCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH----------HHHH-
Confidence 589999999999999999999873 2 122222222 221 1122 2468999999974321 1111
Q ss_pred HHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHH----------HHHHHHH
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAM----------QIEESLK 233 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~----------~~~~~~~ 233 (269)
.....+|++++|+|........ ...++..+... +.|+++|+||+|+........... .......
T Consensus 92 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 169 (207)
T 2fv8_A 92 --LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV 169 (207)
T ss_dssp --GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred --hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH
Confidence 2234599999999987532111 13445555544 789999999999986543322111 1111111
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
.. ...+++++||++|.|+++|+++|.+.+..
T Consensus 170 ~~--~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 170 RI--QAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HT--TCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred hc--CCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 11 12378999999999999999999887643
No 122
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=2.1e-20 Score=151.55 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
++|+++|.+|+|||||+|+|++.. . .....+.++.+. .+... ...+.+|||||.... ..+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~-- 91 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ-F-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------DRLRP-- 91 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-C-CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------TTTGG--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-C-CcccCCcccceEEEEEEECCEEEEEEEEECCCchhH----------HHHHH--
Confidence 589999999999999999999873 2 112222222222 11111 236899999996321 11111
Q ss_pred HhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHHHHh
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESLKA 234 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~~ 234 (269)
.....+|++++|+|......... ..++..+... +.|+++|+||+|+.......... .........
T Consensus 92 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (201)
T 2gco_A 92 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR 170 (201)
T ss_dssp -GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred -HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh
Confidence 22345999999999875322111 2445555544 78999999999998764322111 111111111
Q ss_pred cCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
. ...+++++||++|.|+++++++|.+.+
T Consensus 171 ~--~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 171 I--SAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp T--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred C--CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1 123799999999999999999998865
No 123
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=150.90 Aligned_cols=169 Identities=16% Similarity=0.180 Sum_probs=103.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC--CceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~--gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
...++|+++|.+|+|||||+|+|++.. ...+..+ ++|.++... ..+..+.+|||||+.+...... +....+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~--~~~~~~ 102 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK--VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA--ETSKEI 102 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC--CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH--HHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC--cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH--HHHHHH
Confidence 456799999999999999999999983 2444444 566665432 2366899999999976532211 122344
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHH-----hhCCcEEEEEecCCCCCchHHHHHHH----HHHHHHHhc
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAM----QIEESLKAN 235 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~----~~~~~~~~~ 235 (269)
...+......+|++++|+|+. .+...+..++..+. ....|+++|+||+|+........... .+++....+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 455555556789999999987 34555555555543 23469999999999987655442221 233333333
Q ss_pred CCCCCCeEEeeCCCC-----CCHHHHHHHHHHhhhh
Q 024325 236 NSLVQPVMMVSSKSG-----AGIRSLRTVLSKIARF 266 (269)
Q Consensus 236 ~~~~~~vi~vSa~~g-----~gi~~L~~~i~~~~~~ 266 (269)
...++.+++..+ .|+.+|++.|...+..
T Consensus 182 ---~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 182 ---GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ---SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 345677777654 7999999998887754
No 124
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=3.4e-20 Score=149.14 Aligned_cols=155 Identities=12% Similarity=0.011 Sum_probs=99.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ....+.+|+.+.. +...+ ..+.+|||||..... .+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~ 84 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLRP 84 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------TTGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh----------HHHH
Confidence 4689999999999999999999872 3344444443322 11122 468899999975321 1111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHH----------HHHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~ 232 (269)
.....+|++++|+|+........ ..++..+... ++|+++|+||+|+......... .....+..
T Consensus 85 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (194)
T 2atx_A 85 ---LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 161 (194)
T ss_dssp ---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred ---HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence 22345999999999875322222 1345555554 7899999999999865322110 01111111
Q ss_pred HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
.... ..+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 162 KEIG--ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHT--CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcC--CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111 23899999999999999999998765
No 125
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=147.95 Aligned_cols=158 Identities=14% Similarity=0.059 Sum_probs=98.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
...++|+++|.+|+|||||+|+|++... .....++++.+.. +... ...+.+|||||..... ..+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~ 89 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GWL 89 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hhh
Confidence 3457999999999999999999986521 1223344443322 1112 2357899999984321 012
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
...|+. .+|++++|+|........ -..++..+.. .+.|+++|+||+|+........ .......... .
T Consensus 90 ~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~a~~~---~ 161 (195)
T 3cbq_A 90 RDHCLQ---TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--EEGRHLAGTL---S 161 (195)
T ss_dssp HHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCH--HHHHHHHHHT---T
T ss_pred HHHhhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCH--HHHHHHHHHh---C
Confidence 223333 289999999987432111 1233333433 3689999999999975322110 1111111111 3
Q ss_pred CCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 240 QPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
.+++++||++|.|+++++++|.+.+..
T Consensus 162 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 162 CKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887654
No 126
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=151.10 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=93.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. . .....+.++.+. .....+ ..+.+|||||... +..+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~ 92 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK-F-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRSVTR 92 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSCCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-C-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHHHHH
Confidence 4689999999999999999999873 2 222223233222 222222 4789999999521 112222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.++. .+|++++|+|+........ ..++..+.. .+.|+++|+||+|+........ ......... ...++
T Consensus 93 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~ 164 (200)
T 2o52_A 93 SYYR---GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEASRFAQE---NELMF 164 (200)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred HHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH--HHHHHHHHH---cCCEE
Confidence 3333 3999999999875322111 233333333 3689999999999964322110 111111221 24689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 165 ~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 165 LETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 127
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.6e-19 Score=145.54 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=97.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-ee--EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN--FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~--~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+|+|++.. . ...+.+|+.+ .. +... ...+.+|||||.... .. .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~----~ 92 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR-F--IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-------IQ----R 92 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC-C--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC-------HH----H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-C--CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCcc-------cc----h
Confidence 35799999999999999999999873 2 2223333222 11 1111 346899999998541 11 1
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCC
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLV 239 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 239 (269)
..++.. +|++++|+|++....... ..++..+.. .+.|+++|+||+|+...... ......+.+ .. .
T Consensus 93 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---~~---~ 163 (196)
T 2atv_A 93 EGHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT---EL---A 163 (196)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH---T
T ss_pred hhhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH---Hh---C
Confidence 222222 899999999875322111 223333332 47899999999999753221 111111211 11 4
Q ss_pred CCeEEeeCCCCC-CHHHHHHHHHHhhhh
Q 024325 240 QPVMMVSSKSGA-GIRSLRTVLSKIARF 266 (269)
Q Consensus 240 ~~vi~vSa~~g~-gi~~L~~~i~~~~~~ 266 (269)
.+++++||++|. |+++++++|.+.+..
T Consensus 164 ~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 164 CAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp SEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 689999999999 999999999887654
No 128
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=164.92 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=99.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (269)
.++|+++|.+|+|||||+|+|++.. . +...|.+..+.. +...+..+.+|||||.... ..+...++.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~-~--~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~ 231 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGE-I--VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYFQ 231 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSC-C--EEEEEETTEEEEEEEETTEEEEEEECC---------------CCSHHHHHT
T ss_pred cceEEEECCCCccHHHHHHHHhCCC-C--CCcccccceEEEEEecCcEEEEEEECCCCHhH----------HHHHHHHhc
Confidence 3589999999999999999999873 2 233331212221 2223567999999995321 122233333
Q ss_pred cccccceEEEEEeCCCCCCcc--hHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 171 TRVSLKRVCLLIDTKWGVKPR--DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 171 ~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
.+|++++|+|+....... ...+...+... ++|+++|+||+|+............+.. ........+++++
T Consensus 232 ---~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~v 306 (329)
T 3o47_A 232 ---NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--HSLRHRNWYIQAT 306 (329)
T ss_dssp ---TEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTC--TTCCSSCEEEEEC
T ss_pred ---cCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhch--hhhhcCCCEEEEE
Confidence 399999999997533222 22333333332 7899999999999876544333222211 0111234579999
Q ss_pred eCCCCCCHHHHHHHHHHhhhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~~~ 267 (269)
||++|.|+++|+++|.+.+...
T Consensus 307 SAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 307 CATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp BTTTTBTHHHHHHHHHHHHTC-
T ss_pred ECCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999887643
No 129
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.83 E-value=3.7e-20 Score=151.05 Aligned_cols=157 Identities=18% Similarity=0.048 Sum_probs=99.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+++|++.. +...+.+|+.+.. +...+ ..+.+|||||..... .+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 74 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----------RLR 74 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC----------C--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---CCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH----------HHH
Confidence 44789999999999999999999862 2344444443321 11112 368999999974321 111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHH------HHHHHHHHHHhc
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVAR------RAMQIEESLKAN 235 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~------~~~~~~~~~~~~ 235 (269)
.. ....+|++++|+|......... ..++..+... +.|+++|+||+|+........ ......+.....
T Consensus 75 ~~---~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 75 PL---SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp CG---GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred Hh---hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence 12 2334899999999875322222 1344555544 789999999999976533200 011111111111
Q ss_pred CCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
. ..+++++||++|+|+++++++|.+.+.
T Consensus 152 ~--~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 152 G--AAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp T--CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred C--CceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 1 248999999999999999999988764
No 130
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.83 E-value=1e-20 Score=163.78 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=101.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCc-----cccCCCC---CceeEe------------------------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKP---GLTQTI------------------------------ 131 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~-----~~~s~~~---gtt~~~------------------------------ 131 (269)
...|.|+++|.+|+|||||+|+|++. .. ..++..| .++++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~-~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR-DFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS-CCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC-CcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 45789999999999999999999998 43 3344455 233320
Q ss_pred -----------------------e-EEEeCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeC
Q 024325 132 -----------------------N-FFKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184 (269)
Q Consensus 132 -----------------------~-~~~~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~ 184 (269)
. +...+..+.+|||||+..... .......+......++. .+|++++|+|+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~iilvvd~ 177 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK---KQNAIIVAVTP 177 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHH---STTEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc---CCCeEEEEEEe
Confidence 0 111245799999999864211 01112223333344443 48999999997
Q ss_pred -CCCCCcch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe---eCCC---CCCHHHH
Q 024325 185 -KWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV---SSKS---GAGIRSL 256 (269)
Q Consensus 185 -~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v---Sa~~---g~gi~~L 256 (269)
..++...+ ..+++.+...+.|+++|+||+|+...... ....+.. .......+++++ |+.+ +.|++++
T Consensus 178 ~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~---~~~~~~~~~~~v~~~sa~~~~~~~gv~~l 252 (315)
T 1jwy_B 178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD--AMEVLTG---RVIPLTLGFIGVINRSQEDIIAKKSIRES 252 (315)
T ss_dssp SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC--CHHHHTT---SSSCCTTCEEECCCCCHHHHSSSCCHHHH
T ss_pred cCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH--HHHHHhC---CCccCCCCeEEEecCChhhhccCCCHHHH
Confidence 44555444 47777777778999999999999865431 1111111 111111344454 5555 7999999
Q ss_pred HHHHHHhhhh
Q 024325 257 RTVLSKIARF 266 (269)
Q Consensus 257 ~~~i~~~~~~ 266 (269)
++.+.+.+..
T Consensus 253 ~~~~~~~~~~ 262 (315)
T 1jwy_B 253 LKSEILYFKN 262 (315)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9998877653
No 131
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=2.4e-20 Score=151.19 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-Eee--EEEe-----CCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN--FFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~--~~~~-----~~~~~lvDtpG~~~~~~~~~~~~~~~~ 163 (269)
.++|+++|.+|+|||||+|+|++. .....+.+.+|+. +.. .... ...+.+|||||.. .+..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK-GSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD----------LYKE 88 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTH----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH----------HHHH
Confidence 368999999999999999999987 2233444444443 322 2222 2368999999972 1122
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCC-chHHHHHHHHHHHHHHhc
Q 024325 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKAN 235 (269)
Q Consensus 164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~ 235 (269)
........+|++++|+|+..+..... ..++..+.. .++|+++|+||+|+.. ..... .....+.....
T Consensus 89 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~--~~~~~~~~~~~ 163 (208)
T 2yc2_C 89 ---QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR--LDMAQDWATTN 163 (208)
T ss_dssp ---HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC--HHHHHHHHHHT
T ss_pred ---HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC--HHHHHHHHHHc
Confidence 22334456999999999875322111 234444443 3789999999999976 22211 11122222222
Q ss_pred CCCCCCeEEeeCCC-CCCHHHHHHHHHHhhh
Q 024325 236 NSLVQPVMMVSSKS-GAGIRSLRTVLSKIAR 265 (269)
Q Consensus 236 ~~~~~~vi~vSa~~-g~gi~~L~~~i~~~~~ 265 (269)
..+++++||++ |.|+++++++|.+.+.
T Consensus 164 ---~~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 164 ---TLDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp ---TCEEEECCC-------CHHHHHHHHHHH
T ss_pred ---CCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 46899999999 9999999999988653
No 132
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.83 E-value=2.3e-20 Score=153.00 Aligned_cols=156 Identities=15% Similarity=0.032 Sum_probs=98.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+|+|++.. +...+.+|+.+... .. ....+.+|||||.... ..+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~ 92 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDC---YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY----------DNVR 92 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG----------TTTG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC---CCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH----------HHHH
Confidence 35799999999999999999999873 23333333332211 11 1346889999996321 1111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHH----------HHHHHHHH
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVAR----------RAMQIEES 231 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~----------~~~~~~~~ 231 (269)
.. ....+|++++|+|......... ..++..+... +.|+++|+||+|+........ ........
T Consensus 93 ~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (214)
T 3q3j_B 93 PL---CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI 169 (214)
T ss_dssp GG---GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HH---HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence 22 2334999999999985432222 2445555544 789999999999975311000 00111111
Q ss_pred HHhcCCCCC-CeEEeeCCCCCC-HHHHHHHHHHhhh
Q 024325 232 LKANNSLVQ-PVMMVSSKSGAG-IRSLRTVLSKIAR 265 (269)
Q Consensus 232 ~~~~~~~~~-~vi~vSa~~g~g-i~~L~~~i~~~~~ 265 (269)
.... .. +++++||++|.| +++++++|.+.+.
T Consensus 170 ~~~~---~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 170 AKQL---GAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHH---TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHc---CCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 1111 34 899999999998 9999999988764
No 133
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=2e-20 Score=174.27 Aligned_cols=158 Identities=21% Similarity=0.333 Sum_probs=107.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-CceeEee--EEEe-------------------CCcEEEEcCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTIN--FFKL-------------------GTKLCLVDLPGYG 149 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-gtt~~~~--~~~~-------------------~~~~~lvDtpG~~ 149 (269)
.|+|+++|++|+|||||+++|++. . .....+ ++|.+.. +... ...+.||||||+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~-~--v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGS-A--VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH-H--HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcc-c--CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 579999999999999999999986 2 222222 4444421 1110 1148999999984
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch----------
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI---------- 219 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~---------- 219 (269)
.... ........+|++++|+|+.+++..+..+.+..+...++|+++|+||+|+....
T Consensus 82 ~F~~-------------~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e 148 (594)
T 1g7s_A 82 AFTT-------------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME 148 (594)
T ss_dssp CCTT-------------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred HHHH-------------HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHH
Confidence 3210 11123445999999999999888888888888888899999999999997421
Q ss_pred -------H----HHHHHHHHHHHHHhcC------------CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 220 -------D----VARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 220 -------~----~~~~~~~~~~~~~~~~------------~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
. +......+.+.+.... ....|++++||++|.|+++|+++|...+.
T Consensus 149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 1 1111112222222210 12348999999999999999999987664
No 134
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.83 E-value=1e-19 Score=157.25 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=105.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.++|+++|.+|+|||||+|++++. ....+++.+++|.+..+... +..+.+|||||.... .......+...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~ 76 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH 76 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence 368999999999999999999987 34567778888887765432 457899999996210 00000122233
Q ss_pred HHhcccccceEEEEEeCCCCCCcchH-HHHHHHHh-----hCCcEEEEEecCCCCCchHHH----HHHHHHHHHHHhcCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER-----SQTKYQVVLTKTDTVFPIDVA----RRAMQIEESLKANNS 237 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~ 237 (269)
++. .+|++++|+|+.......+. .+..++.. .++|+++|+||+|+..+.... .....+.+.......
T Consensus 77 ~~~---~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 77 IFQ---MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHT---TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hhc---cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 333 49999999999865333332 23333332 278999999999998743332 112333333332211
Q ss_pred CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 238 LVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 238 ~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
...+++++||++ .|+.+++..+...
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 137899999999 8888888777654
No 135
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.82 E-value=8.4e-20 Score=149.48 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=95.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe------------CCcEEEEcCCCCCCcchhHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL------------GTKLCLVDLPGYGFAYAKEE 156 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~------------~~~~~lvDtpG~~~~~~~~~ 156 (269)
.++|+++|.+|+|||||+|+|++.. . .....+.++.+.. +... ...+.+|||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK-F-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC-C-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC-C-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------
Confidence 4689999999999999999999863 1 1111111222221 1111 3468999999941
Q ss_pred HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
.+..+...++. .+|++++|+|+...... ..+..++.. .+.|+++|+||+|+........ ....
T Consensus 96 ---~~~~~~~~~~~---~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~--~~~~ 165 (217)
T 2f7s_A 96 ---RFRSLTTAFFR---DAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE--RQAR 165 (217)
T ss_dssp ---HHHHHHHHHHT---TCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH--HHHH
T ss_pred ---hHHhHHHHHhc---CCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCH--HHHH
Confidence 22333334433 49999999998753211 222233332 3679999999999975322110 1111
Q ss_pred HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.... ...+++++||++|.|+++++++|.+.+.
T Consensus 166 ~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 166 ELADK---YGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHH---TTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHH---CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222 2468999999999999999999987653
No 136
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.82 E-value=3.8e-21 Score=169.38 Aligned_cols=168 Identities=19% Similarity=0.220 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCcc-----ccCCCCC----------------------ceeE------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT------------ 130 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-----~~s~~~g----------------------tt~~------------ 130 (269)
...|+|+++|.+|+|||||+|+|++. ... .++..|+ +|.+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~-~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTS-CCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCC-CcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999997 333 3445555 2322
Q ss_pred --------------eeEEE-eCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch
Q 024325 131 --------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192 (269)
Q Consensus 131 --------------~~~~~-~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~ 192 (269)
+.... .+..+.||||||+..... ...+.+.+..+...|+.. ..+++++|+|+..++...+
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~ 185 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSD 185 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhH
Confidence 00011 146799999999875321 223334556677777653 3567778888876666555
Q ss_pred H-HHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 193 H-ELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 193 ~-~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
. .+++.+...+.|+++|+||+|+.+... ... .+............+++++||++|.|+++|++++.+.
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHH---HHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 4 366666667899999999999986532 111 1110000000112367899999999999999998763
No 137
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=4.8e-20 Score=166.65 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc---------cccCCCCCc----------------------eeEeeEE---Ee
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDKPGL----------------------TQTINFF---KL 136 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~---------~~~s~~~gt----------------------t~~~~~~---~~ 136 (269)
..++|+++|.+|+|||||+|+|++.... ...+..+++ |.+..+. ..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 3468999999999999999999865210 111222333 3333222 23
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCC
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl 215 (269)
+..+.+|||||+... ..........+|++++|+|+..+...+..+.+..+...+. |+++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGG-------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 557999999997321 1112223345999999999998887777777777777776 59999999999
Q ss_pred CCc--hHHHHHHHHHHHHHHhcC--CCCCCeEEeeCCCCCCHHH
Q 024325 216 VFP--IDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~--~~~~~vi~vSa~~g~gi~~ 255 (269)
.+. .........+.+.+.... ....+++++||++|.|+++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 863 223334444555444432 2236799999999999987
No 138
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.82 E-value=4.7e-20 Score=168.78 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=100.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC-----------------------------ccccCCCCCceeEeeEE---EeCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFF---KLGT 138 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-----------------------------~~~~s~~~gtt~~~~~~---~~~~ 138 (269)
...+|+++|.+|+|||||+|+|++... .......+|+|.+..+. ..+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 346899999999999999999976410 01122345677665433 3467
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCC-cEEEEE
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~-p~iiv~ 210 (269)
.+.+|||||+.. +..........+|++++|+|+..+ ...+..+.+..+...+. |+++|+
T Consensus 112 ~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp EEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 899999999832 222333334459999999999875 34455666666666664 599999
Q ss_pred ecCCCCCc--hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325 211 TKTDTVFP--IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 211 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~ 255 (269)
||+|+.+. .........+...+..... ...+++++||++|+|+++
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99999863 2333344444444433221 146799999999999985
No 139
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=3.6e-21 Score=158.28 Aligned_cols=155 Identities=13% Similarity=0.031 Sum_probs=103.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..++|+++|.+|+|||||+|+++.........+.+|++........ +..+.+|||||.... ..+...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 83 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF----------GGLRDG 83 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT----------SCCCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH----------hHHHHH
Confidence 3479999999999999999995543233455677777777654443 356899999996321 111122
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
++. .+|++++|+|+........ ..++..+... ++|+++|+||+|+........... +.. . ...++++
T Consensus 84 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~---~---~~~~~~~ 153 (221)
T 3gj0_A 84 YYI---QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHR---K---KNLQYYD 153 (221)
T ss_dssp HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCC-HHH---H---HTCEEEE
T ss_pred HHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHH-HHH---H---cCCEEEE
Confidence 333 3999999999975322221 2334444332 789999999999976432111111 111 1 1468999
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||++|.|+++++++|.+.+.
T Consensus 154 ~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 154 ISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp CBGGGTBTTTHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 140
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=1e-19 Score=162.64 Aligned_cols=160 Identities=19% Similarity=0.263 Sum_probs=113.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc---Ccc-c----------cCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW---GVV-R----------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKE 155 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~---~~~-~----------~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~ 155 (269)
.+|+++|++|+|||||+++|++.. ... . .....|+|.+..+.. .+..+.+|||||+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~------- 76 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH------- 76 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH-------
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh-------
Confidence 589999999999999999998741 000 0 011356666654332 3578999999996
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHHHHH
Q 024325 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLK 233 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 233 (269)
..+..........+|++++|+|+..+...+..+.+..+...++| +++|+||+|+.+..+ .......+.+.+.
T Consensus 77 ------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 77 ------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp ------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 22334445566679999999999988877777777778778899 689999999985322 2333344555554
Q ss_pred hcCC--CCCCeEEeeCCCCCC----------HHHHHHHHHHhhh
Q 024325 234 ANNS--LVQPVMMVSSKSGAG----------IRSLRTVLSKIAR 265 (269)
Q Consensus 234 ~~~~--~~~~vi~vSa~~g~g----------i~~L~~~i~~~~~ 265 (269)
.... ...|++++||++|.| +++|++.|.+.+.
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 4321 246899999999774 8999999987653
No 141
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.82 E-value=4.6e-20 Score=165.37 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=112.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc--Cc---cc----cC------CCCCceeEeeE---EEeCCcEEEEcCCCCCCcc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW--GV---VR----TS------DKPGLTQTINF---FKLGTKLCLVDLPGYGFAY 152 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~--~~---~~----~s------~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~ 152 (269)
..++|+++|++|+|||||+|+|++.. .. .. .. ..+|+|.+... ...+..+.+|||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 34789999999999999999998730 00 00 00 12455555432 22357899999999743
Q ss_pred hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHH
Q 024325 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEE 230 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~ 230 (269)
+..........+|++++|+|+..+...+..+++..+...++| +++|+||+|+....+ .......+.+
T Consensus 88 -----------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 88 -----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp -----------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 112223334459999999999988877778888888888899 889999999985322 2333344555
Q ss_pred HHHhcCC--CCCCeEEeeCCCCCC------------------HHHHHHHHHHhhh
Q 024325 231 SLKANNS--LVQPVMMVSSKSGAG------------------IRSLRTVLSKIAR 265 (269)
Q Consensus 231 ~~~~~~~--~~~~vi~vSa~~g~g------------------i~~L~~~i~~~~~ 265 (269)
.+..... ...|++++||++|.| +++|++.|.+.+.
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 4444321 247899999999987 8889988877553
No 142
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.2e-20 Score=151.63 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=93.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.++|+++|.+|+|||||+|+|++.. .... .+..+++........+ ..+.+|||||..... .+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~- 80 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE-FNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR----------AITS- 80 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC-CCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCG-
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh----------hhHH-
Confidence 4689999999999999999999873 2211 1222222222222222 478999999974321 1111
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
.....+|++++|+|......... ..++..+... ++|+++|+||+|+........ ......... ...+++
T Consensus 81 --~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~~ 153 (223)
T 3cpj_B 81 --AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--EESKTFAQE---NQLLFT 153 (223)
T ss_dssp --GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--HHHHHHHHH---TTCEEE
T ss_pred --HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--HHHHHHHHH---cCCEEE
Confidence 12334899999999875322221 2334444432 689999999999975322110 111111221 246899
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||++|.|+++++++|.+.+.
T Consensus 154 ~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 154 ETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp ECCCC-CCCHHHHHHHHHHHHT
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 143
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=9.3e-20 Score=149.21 Aligned_cols=155 Identities=16% Similarity=0.076 Sum_probs=94.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|++++. ...+++.+++++.+.. ....+ ..+.+|||+|.... ...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~-~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---------~~~l~~ 106 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGV-HDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLHD 106 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-CCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---------hhhHHH
Confidence 478999999999999999999976 3344555444443321 11122 34678999996320 111222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQ 240 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~ 240 (269)
. ....++++++|+|......... ..+...+.. .++|+++|+||+|+........ ....+... ...
T Consensus 107 ~---~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~------~~~ 177 (211)
T 2g3y_A 107 H---CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV------FDC 177 (211)
T ss_dssp C---CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH------HTC
T ss_pred H---HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH------cCC
Confidence 2 2334889999999864211111 123333432 3689999999999964322111 11111111 136
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++++||++|+|+++++++|.+.+.
T Consensus 178 ~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 178 KFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999988764
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.81 E-value=5.6e-22 Score=182.21 Aligned_cols=158 Identities=19% Similarity=0.218 Sum_probs=114.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
.|+|+++|++|+|||||+|+|++.. ......+|+|.++.... .+..+.||||||+... ...
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~--~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f-------------~~~ 68 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQ--VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAF-------------SAM 68 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHH--HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT-------------TTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHH-------------HHH
Confidence 5789999999999999999999873 33446788888875432 3557999999997431 111
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH--hcCCCCCCeEEe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPVMMV 245 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~vi~v 245 (269)
.......+|++++|+|+..+..++..+.+..+...++|+++|+||+|+...... .....+..... .......+++++
T Consensus 69 ~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~v 147 (537)
T 3izy_P 69 RARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHV 147 (537)
T ss_dssp BBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCC
T ss_pred HHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEE
Confidence 123345599999999999988888888888888889999999999999753210 00111111000 001123579999
Q ss_pred eCCCCCCHHHHHHHHHHhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~ 265 (269)
||++|.|+++|+++|...+.
T Consensus 148 SAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 148 SALTGENMMALAEATIALAE 167 (537)
T ss_dssp CSSSSCSSHHHHHHHHHHHT
T ss_pred ECCCCCCchhHHHHHHHhhh
Confidence 99999999999999988764
No 145
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.6e-20 Score=171.71 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=106.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCC------------------------------CCCceeEeeE---EEe
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------------------------------KPGLTQTINF---FKL 136 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~------------------------------~~gtt~~~~~---~~~ 136 (269)
...++|+++|++|+|||||+|+|++.. ...... .+|+|.+..+ ...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~-~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL-NIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS-SCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc-CCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 446799999999999999999999762 111111 2577776532 334
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCCc-EEE
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQV 208 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~p-~ii 208 (269)
+..+.||||||+.. +..........+|++++|+|+..+ ...+..+.+..+...++| +++
T Consensus 244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 67899999999832 344555666779999999999764 345556666667766755 999
Q ss_pred EEecCCCCCc--hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHHH
Q 024325 209 VLTKTDTVFP--IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 209 v~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~L 256 (269)
|+||+|+.+. .........+...+..... ...+++++||++|.|++++
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999999863 2233334444444433221 1468999999999999865
No 146
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=6.3e-20 Score=168.61 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++. .. +...| |.+..+ ...+..+.+|||||.... ..+ .
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~-~~--~~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~---~ 383 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLG-QS--VTTIP--TVGFNVETVTYKNVKFNVWDVGGQDKI----------RPL---W 383 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS-SC--CCCCC--CSSEEEEEEESSSCEEEEEEECCCGGG----------SGG---G
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcC-CC--CCcCC--ccceeEEEEEeCCEEEEEEECCCcHHH----------HHH---H
Confidence 468999999999999999999988 32 33333 222222 223678999999996331 111 1
Q ss_pred HhcccccceEEEEEeCCCCCCcch--HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi 243 (269)
......+|++++|+|++....... ..+...+.. .++|+++|+||+|+............+.. ........+++
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~ 461 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL--TRIRDRNWYVQ 461 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTC--TTCCSSCEEEE
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhch--hhhhcCCeEEE
Confidence 223345999999999985322211 122222222 37899999999999765433222221110 00111234699
Q ss_pred EeeCCCCCCHHHHHHHHHHhhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++||++|+|+++++++|.+.+..
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 147
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.81 E-value=2.1e-19 Score=147.53 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
++|+++|.+|+|||||+++++... +...+..| ..+.. .... ...+.+|||+|.... ..+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~---f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~----------~~l~~ 80 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDS---FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF----------RSLIP 80 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC---CC----------CEEEEEECSSCEEEEEEECCSCTTTC----------GGGHH
T ss_pred EEEEEECcCCcCHHHHHHHHHhCC---CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhh----------hhHHH
Confidence 589999999999999999999762 22332222 22221 1111 245789999997432 23344
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (269)
.|++. ++++++|+|......... ..++..+.. .++|+++|.||+|+.....+. ...+.+.+ .. +.+
T Consensus 81 ~~~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~---~~---~~~ 151 (216)
T 4dkx_A 81 SYIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK---EL---NVM 151 (216)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH---HH---TCE
T ss_pred HHhcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH---Hh---CCe
Confidence 55544 899999999874322211 233333332 368999999999987532211 11111221 11 467
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.||+++|+.|.+.+.
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999987663
No 148
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=1.8e-21 Score=158.00 Aligned_cols=155 Identities=13% Similarity=0.001 Sum_probs=97.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---E--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---F--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 165 (269)
..++|+++|.+|+|||||+|+|++.. ....+.+|+.+... . .....+.+|||||.... ..+.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~ 95 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLR 95 (204)
Confidence 34689999999999999999999762 23334444433221 1 12345679999996321 2222
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHH
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEES 231 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~ 231 (269)
..++ ..+|++++|+|+.......+ ..++..+... ++|+++|+||+|+.+........ ......
T Consensus 96 ~~~~---~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 96 PLSY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 2222 33899999999875433332 2444555444 78999999999997643211110 011111
Q ss_pred HHhcCCCCC-CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 232 LKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~~~~~-~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
. ..... +++++||++|.|+++++++|.+.+
T Consensus 173 ~---~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 173 A---KEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 1 11123 789999999999999999987653
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=144.43 Aligned_cols=151 Identities=12% Similarity=0.040 Sum_probs=96.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..+|+++|.+|+|||||+|+|++.. +...+.+|+.+.. .... ...+.+|||||..... .+ .
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~-~ 86 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR---FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR----------NC-E 86 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC----------CT-H
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch----------hH-H
Confidence 4689999999999999999999872 3344555554431 1111 3468899999974321 11 1
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL 238 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 238 (269)
.++. .+|++++|+|......... ..++..+.. .+.|+++|+||+|+....... .....+. ...
T Consensus 87 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~--- 157 (187)
T 3c5c_A 87 RYLN---WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA---GRF--- 157 (187)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH---HHH---
T ss_pred HHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH---HHc---
Confidence 2333 3899999999874221111 223333332 378999999999996432211 1111111 111
Q ss_pred CCCeEEeeC-CCCCCHHHHHHHHHHhhh
Q 024325 239 VQPVMMVSS-KSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 239 ~~~vi~vSa-~~g~gi~~L~~~i~~~~~ 265 (269)
..+++++|| ++|.|+++++++|.+.+.
T Consensus 158 ~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 158 GCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp TCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 368999999 899999999999988764
No 150
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.80 E-value=4.2e-19 Score=141.82 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEeeEEE--------eCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~~~~--------~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 163 (269)
.+|+++|.+|+|||||+|+|++.. ....+.+.+| ..+..... ....+.+|||||.. .+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~-~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK-KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------EFYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH----------HHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH----------HHHH
Confidence 589999999999999999999852 1223322222 23332111 24578999999952 1122
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (269)
Q Consensus 164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
+...|+.. ++++++|+|.+.+.... -..++..+.. .+.|+++|.||+|+..............+.+. ....
T Consensus 72 ~~~~~~~~---~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~ 146 (184)
T 2zej_A 72 THPHFMTQ---RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELL--NKRG 146 (184)
T ss_dssp TSHHHHHH---SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT--TCTT
T ss_pred hhHHHccC---CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHH--HhcC
Confidence 22333333 78899999987542111 1233333332 36899999999999865433222112212111 1123
Q ss_pred CC----eEEeeCCCCC-CHHHHHHHHHHhhhhh
Q 024325 240 QP----VMMVSSKSGA-GIRSLRTVLSKIARFA 267 (269)
Q Consensus 240 ~~----vi~vSa~~g~-gi~~L~~~i~~~~~~~ 267 (269)
.+ ++++||++|. |+++|++.|.+.+...
T Consensus 147 ~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 147 FPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred CcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 44 8999999996 9999999998877544
No 151
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=159.89 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=93.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCc-----CccccC-------------------------------CCC------Cc
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-------------------------------DKP------GL 127 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s-------------------------------~~~------gt 127 (269)
...+.|+++|+||||||||+|+|++.. .+...+ +.| |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 457899999999999999999998621 111122 222 23
Q ss_pred eeEeeE-----EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh
Q 024325 128 TQTINF-----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 202 (269)
Q Consensus 128 t~~~~~-----~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~ 202 (269)
|++... ...+..+.++||||++.+. ..+ ...+|++++|+|++.+.... .+.. .-.
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---------~~l-------~~~~d~vl~V~d~~~~~~~~--~i~~--~il 211 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---------FAV-------ADMVDMFVLLLPPAGGDELQ--GIKR--GII 211 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---------HHH-------HTTCSEEEEEECCC----------------C
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---------hhH-------HhhCCEEEEEEcCCcchhHH--HhHH--HHH
Confidence 332210 1135678999999986421 111 12499999999987542211 1111 113
Q ss_pred CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 203 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
..|.++|+||+|+.+..........+...+.... ....+++++||++|+|+++|+++|.+.+.
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 5789999999999754333222333333222111 12457899999999999999999988764
No 152
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.80 E-value=1.5e-19 Score=171.34 Aligned_cols=167 Identities=20% Similarity=0.206 Sum_probs=115.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee----------------------------------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---------------------------------------- 129 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~---------------------------------------- 129 (269)
...|+|+++|.+|+|||||+|+|+|. ...+.+..+ +|+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~-~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~ 126 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 126 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSS-CCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC-CccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence 35789999999999999999999997 332222211 121
Q ss_pred -----------Eee----EEEeCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc
Q 024325 130 -----------TIN----FFKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 191 (269)
Q Consensus 130 -----------~~~----~~~~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~ 191 (269)
+.. +......+.||||||+..... +..+...+..++..|.. ..+|++++|+|++.++...
T Consensus 127 ~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~ 204 (772)
T 3zvr_A 127 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANS 204 (772)
T ss_dssp HHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSC
T ss_pred hhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchh
Confidence 100 011134589999999987321 23345567778888876 4589999999999887777
Q ss_pred hH-HHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH-HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325 192 DH-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE-SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 192 ~~-~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~ 263 (269)
+. .++..+...+.|+++|+||+|+.+...... .+.. ..........+++++||++|.|+++|++.|.+.
T Consensus 205 d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~---~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 205 DALKIAKEVDPQGQRTIGVITKLDLMDEGTDAR---DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSH---HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcccCCcchhhH---HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 76 788888888899999999999987543211 1111 000000113478999999999999999999863
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=3.5e-19 Score=164.05 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=82.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcc--------------ccC------CCCCceeE---eeEEEeCCcEEEEcCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQT---INFFKLGTKLCLVDLPGY 148 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~--------------~~s------~~~gtt~~---~~~~~~~~~~~lvDtpG~ 148 (269)
.++|+++|++|+|||||+|+|+...... .++ ..+|+|.. ..+...+..+.+|||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 3689999999999999999997321000 000 01233332 233344678999999998
Q ss_pred CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
.+.. ......+..+|.+++|+|+..+...+...++..+...++|+++|+||+|+...
T Consensus 93 ~df~-------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 93 ADFT-------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTCC-------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred hhHH-------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 5421 12333444599999999999988888888888888889999999999999754
No 154
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.80 E-value=3.2e-21 Score=180.05 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=95.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCcccc------------------------------CCCCCceeEeeEEE---e
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---L 136 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~------------------------------s~~~gtt~~~~~~~---~ 136 (269)
...++|+++|++|+|||||+|+|++.. .... ...+|+|.+..+.. .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~-~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFEL-GEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHH-HCC-------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHc-CCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 445789999999999999999997531 1111 11457787765433 3
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-----C--CcchHHHHHHHHhhCCc-EEE
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPRDHELISLMERSQTK-YQV 208 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-----~--~~~~~~~~~~l~~~~~p-~ii 208 (269)
+..+.||||||+.... .........+|++++|+|+..+ + ..+..+.+..+...++| +|+
T Consensus 254 ~~~i~iiDTPGh~~f~-------------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFI-------------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp -----CCEEESSSEEE-------------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred CeEEEEEECCChHHHH-------------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence 5679999999985321 1112223348999999999864 3 66777888888888887 999
Q ss_pred EEecCCCCC--chHHHHHHHHHHHHH-HhcCC--CCCCeEEeeCCCCCCHH--------------HHHHHHHHhh
Q 024325 209 VLTKTDTVF--PIDVARRAMQIEESL-KANNS--LVQPVMMVSSKSGAGIR--------------SLRTVLSKIA 264 (269)
Q Consensus 209 v~NK~Dl~~--~~~~~~~~~~~~~~~-~~~~~--~~~~vi~vSa~~g~gi~--------------~L~~~i~~~~ 264 (269)
|+||+|+.. ..........+...+ ..... ...+++++||++|.|++ .|++.|....
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred EEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 999999976 333344445555544 22211 13479999999999998 7888887654
No 155
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.79 E-value=4.9e-19 Score=164.92 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=99.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcc-------cc------CCCCCceeEee---EEEe-----CCcEEEEcCCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-------RT------SDKPGLTQTIN---FFKL-----GTKLCLVDLPGYGF 150 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~-------~~------s~~~gtt~~~~---~~~~-----~~~~~lvDtpG~~~ 150 (269)
..+|+++|++|+|||||+++|+...... .+ ....|.|.... +.+. +..+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4689999999999999999998631110 00 01234444322 1111 25688999999843
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 230 (269)
. ......++ ..+|.+++|+|+..+...+....+..+...++|+++|+||+|+.... .....+.+.+
T Consensus 84 F----------~~ev~~~l---~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~~ 149 (599)
T 3cb4_D 84 F----------SYEVSRSL---AACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIED 149 (599)
T ss_dssp G----------HHHHHHHH---HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHH
T ss_pred H----------HHHHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHHH
Confidence 1 11122222 23999999999998888877777776777789999999999998653 2333333433
Q ss_pred HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+ .....+++++||++|.|+++|+++|.+.+.
T Consensus 150 ~l---g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 150 IV---GIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HT---CCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred Hh---CCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 32 112346899999999999999999988764
No 156
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=1.1e-20 Score=172.31 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=110.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
..|+|+++|++|+|||||+++|++. . ...+..+|+|.+...+. .+..+.||||||+.... ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~-~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~-------------~~ 67 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRST-K-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT-------------SM 67 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHH-H-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT-------------TS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC-C-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH-------------HH
Confidence 3578999999999999999999876 2 23344567777664332 35679999999974321 11
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH--HHHhcCCCCCCeEEe
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE--SLKANNSLVQPVMMV 245 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~vi~v 245 (269)
.......+|++++|+|+.++..++..+.+..+...++|+++|+||+|+..... ......+.+ .+........|++++
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~v 146 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHV 146 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEEC
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEE
Confidence 22344569999999999988888888888888888999999999999975311 000000000 000001113689999
Q ss_pred eCCCCCCHHHHHHHHHHh
Q 024325 246 SSKSGAGIRSLRTVLSKI 263 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~ 263 (269)
||++|.|+++|+++|...
T Consensus 147 SAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 147 SAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CTTTCTTCTTHHHHTTTT
T ss_pred eeeeccCcchhhhhhhhh
Confidence 999999999999998653
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.79 E-value=5.7e-19 Score=159.59 Aligned_cols=152 Identities=19% Similarity=0.223 Sum_probs=99.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc-Ccc----------------------------ccCCCCCceeEeeE---EEeCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVV----------------------------RTSDKPGLTQTINF---FKLGT 138 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~-~~~----------------------------~~s~~~gtt~~~~~---~~~~~ 138 (269)
..++|+++|++|+|||||+++|++.. .+. .....+|+|.+..+ ...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 34689999999999999999998641 000 00114567776543 23367
Q ss_pred cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCC-cEEEEE
Q 024325 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (269)
Q Consensus 139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~-p~iiv~ 210 (269)
.+.+|||||+.+ +..........+|++++|+|+..+ +..+..+.+..+...++ |+++|+
T Consensus 85 ~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 899999999843 223344456679999999999876 55566667666666676 599999
Q ss_pred ecCCCCCc----hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325 211 TKTDTVFP----IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 211 NK~Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~ 255 (269)
||+|+.++ .........+.+.+..... ...+++++||++|.|+++
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 99999873 2233444555555544321 136799999999999974
No 158
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.2e-19 Score=155.82 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=69.7
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (269)
Q Consensus 88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 164 (269)
.+.+...|+++|.||+|||||+|+|++.. +.++++|+||++.... ..+..+.++||||+....... ..+
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~------~~~ 139 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG------RGR 139 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh------hHH
Confidence 34667899999999999999999999984 6789999999998643 347789999999997542211 123
Q ss_pred HHHHHhcccccceEEEEEeCCC
Q 024325 165 VKEYVSTRVSLKRVCLLIDTKW 186 (269)
Q Consensus 165 ~~~~~~~~~~~d~vl~vid~~~ 186 (269)
...++.....+|++++|+|+++
T Consensus 140 g~~~l~~i~~ad~il~vvD~~~ 161 (376)
T 4a9a_A 140 GKQVIAVARTCNLLFIILDVNK 161 (376)
T ss_dssp HHHHHHHHHHCSEEEEEEETTS
T ss_pred HHHHHHHHHhcCccccccccCc
Confidence 3445555556999999999875
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.79 E-value=4e-19 Score=154.43 Aligned_cols=155 Identities=15% Similarity=0.015 Sum_probs=100.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|++++. .....+.+|+.+.... ..+ ..+.+|||||.... ..+..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~ 221 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTN---AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLRP 221 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS---CCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------TTTGG
T ss_pred eeEEEEECCCCCChHHHHHHHHhC---CCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh----------hHHHH
Confidence 478999999999999999999987 2345556666554322 123 34569999997431 11111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~ 232 (269)
.....+|++++|+|++......+. .++..+... ++|+++|+||+|+.......... ....+..
T Consensus 222 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 298 (332)
T 2wkq_A 222 ---LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 298 (332)
T ss_dssp ---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred ---HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH
Confidence 223459999999998753322221 344455444 78999999999997643221111 1111111
Q ss_pred HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
... ...+++++||++|.|+++++++|.+.+
T Consensus 299 ~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 299 KEI--GAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHc--CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 111 123899999999999999999998765
No 160
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.79 E-value=3.1e-19 Score=142.41 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=94.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e--eEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~--~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ....+.+|... . .+.. ....+.+|||||.... ..+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 73 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRP 73 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTTGG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh----------hhhHH
Confidence 4689999999999999999999873 12222222222 1 1111 1346899999996321 11111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHH----------HHHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR----------AMQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~ 232 (269)
.....+|++++|+|.+....... ..++..+.. .+.|+++|+||+|+......... .+...+..
T Consensus 74 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 150 (184)
T 1m7b_A 74 ---LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 150 (184)
T ss_dssp ---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred ---hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH
Confidence 12345999999999875322222 233344444 36899999999999753211000 01111112
Q ss_pred HhcCCCCCCeEEeeCC-CCCCHHHHHHHHHHhh
Q 024325 233 KANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA 264 (269)
Q Consensus 233 ~~~~~~~~~vi~vSa~-~g~gi~~L~~~i~~~~ 264 (269)
.... ..+++++||+ +|.|+++++++|.+.+
T Consensus 151 ~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 151 KQIG--AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHT--CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHcC--CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 1111 3589999999 6899999999998765
No 161
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.79 E-value=2.9e-19 Score=143.97 Aligned_cols=156 Identities=16% Similarity=0.114 Sum_probs=92.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|++++. ...+++.+++++.+. .....+ ..+.+|||+|..... ..+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---------~~~~~ 75 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV-HDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---------EWLHD 75 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-SCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC-cCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---------hhHHH
Confidence 468999999999999999999975 223444444443332 111122 246789999964310 01111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
.|.+. +|++++|+|..+...... ..+...+.. .+.|+++|.||+|+........ ......... ...+
T Consensus 76 ~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~--~~~~~~a~~---~~~~ 147 (192)
T 2cjw_A 76 HCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV--SEGRAXAVV---FDXK 147 (192)
T ss_dssp GHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCE
T ss_pred hhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH--HHHHHHHHH---hCCc
Confidence 22222 789999999864221111 233333332 3689999999999864322111 011111111 2457
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++++||++|.|+++++++|.+.+.
T Consensus 148 ~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 148 FIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred eEEeccccCCCHHHHHHHHHHHHH
Confidence 899999999999999999988663
No 162
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.78 E-value=6.3e-19 Score=163.94 Aligned_cols=158 Identities=22% Similarity=0.236 Sum_probs=101.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCcc-------ccC------CCCCceeEe---eEEEe-----CCcEEEEcCCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTI---NFFKL-----GTKLCLVDLPGYG 149 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~-------~~s------~~~gtt~~~---~~~~~-----~~~~~lvDtpG~~ 149 (269)
..++|+++|++|+|||||+++|+...... .+. ...|.|... .+.+. +..+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999998631110 000 113333321 11111 2468899999984
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+- ......+ +..+|.+++|+|+..+...+....+..+...++|+++|+||+|+.... .....+.+.
T Consensus 85 dF----------~~ev~r~---l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~ 150 (600)
T 2ywe_A 85 DF----------SYEVSRA---LAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIE 150 (600)
T ss_dssp GG----------HHHHHHH---HHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred hH----------HHHHHHH---HHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHH
Confidence 31 1111222 234999999999998888777777776777899999999999998653 223333333
Q ss_pred HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.+ .....+++++||++|.|+++|+++|.+.+.
T Consensus 151 ~~l---g~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 151 EVL---GLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HTS---CCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred Hhh---CCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 221 111235899999999999999999988764
No 163
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.78 E-value=1.3e-19 Score=161.45 Aligned_cols=86 Identities=22% Similarity=0.189 Sum_probs=47.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE------------------------e---CCcEEEEcCC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------L---GTKLCLVDLP 146 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~------------------------~---~~~~~lvDtp 146 (269)
+|+++|.||+|||||+|+|++. . +.++++|+||.+..... . ...+.+||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~-~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV-D-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCC-C-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 7999999999999999999998 4 77899999998764321 0 2468999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 024325 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187 (269)
Q Consensus 147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~ 187 (269)
|+..... ....+...++.....+|++++|+|+..+
T Consensus 80 G~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred Ccccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9854211 1123445566667789999999999764
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=1.1e-19 Score=165.15 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=101.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcC-c----------------------cccCC------CCCceeEeeE---EEeCCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWG-V----------------------VRTSD------KPGLTQTINF---FKLGTK 139 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~-~----------------------~~~s~------~~gtt~~~~~---~~~~~~ 139 (269)
.++|+++|++|+|||||+|+|++... + +.+.+ ..|+|.+..+ ...+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 46899999999999999999986410 0 00111 2566666532 233567
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-------chHHHHHHHHhhCCc-EEEEEe
Q 024325 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQTK-YQVVLT 211 (269)
Q Consensus 140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~-------~~~~~~~~l~~~~~p-~iiv~N 211 (269)
+.+|||||+.. +..........+|++++|+|+..+..+ +..+.+..+...++| +++|+|
T Consensus 87 ~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 87 VTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 99999999732 333445566779999999999865322 445555666666776 999999
Q ss_pred cCCCCC--chHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHHH
Q 024325 212 KTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 212 K~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~L 256 (269)
|+|+.+ ..........+.+.+..... ...+++++||++|.|++++
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999984 23333444455554443321 1368999999999999743
No 165
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.78 E-value=3.4e-18 Score=166.68 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=112.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc---Ccc-----------ccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcch
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA 153 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~---~~~-----------~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~ 153 (269)
..++|+++|++|+|||||+++|++.. ... ......|+|.+.. +...+..+.+|||||+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH----- 369 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH----- 369 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH-----
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh-----
Confidence 45789999999999999999998741 000 0112455665542 2234578999999996
Q ss_pred hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHHH
Q 024325 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEES 231 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~~ 231 (269)
..+..........+|++++|+|+..+...+..+.+..+...++| +++|+||+|+.+..+ .......+.+.
T Consensus 370 --------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 370 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp --------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 23344555667779999999999988888888888888888999 789999999986433 22333445555
Q ss_pred HHhcC--CCCCCeEEeeCCCC--------CCHHHHHHHHHHhh
Q 024325 232 LKANN--SLVQPVMMVSSKSG--------AGIRSLRTVLSKIA 264 (269)
Q Consensus 232 ~~~~~--~~~~~vi~vSa~~g--------~gi~~L~~~i~~~~ 264 (269)
+.... ....|++++||++| .|+++|++.|...+
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 54432 12478999999999 57999999998754
No 166
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.77 E-value=1.4e-18 Score=152.99 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=99.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCCcee-------E------------eeE-------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQ-------T------------INF------------- 133 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~gtt~-------~------------~~~------------- 133 (269)
..+.|+++|.+|+|||||+++|... .++..+...|+.+. + ...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 4579999999999999999998642 12222222222211 0 000
Q ss_pred ----------EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC
Q 024325 134 ----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203 (269)
Q Consensus 134 ----------~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~ 203 (269)
...+..+.||||||++.+. ..+ ...+|++++|+|+..+..... +.. ....
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---------~~~-------~~~aD~vl~V~d~~~~~~~~~--l~~--~~~~ 217 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSE---------VAV-------ANMVDTFVLLTLARTGDQLQG--IKK--GVLE 217 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHH---------HHH-------HTTCSEEEEEEESSTTCTTTT--CCT--TSGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHH---------HHH-------HHhCCEEEEEECCCCCccHHH--HHH--hHhh
Confidence 0125679999999986521 111 134999999999864322111 101 0124
Q ss_pred CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 204 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 204 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
.|+++|+||+|+............+...+.... .+..|++++||++|+|+++|+++|.+.+..
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 699999999999765555444555555443322 235789999999999999999999887654
No 167
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.77 E-value=7.8e-19 Score=142.96 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=95.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-Eee-EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~-~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
..+|+++|.+|+|||||+|+|++.. . ...+..|+. +.. .... ...+.+|||||.... ..+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 94 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC-F--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRP 94 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-C--CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-C--CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHHH
Confidence 3689999999999999999999873 2 222222222 221 1111 246899999996321 11111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHH----------HHHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR----------AMQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~ 232 (269)
. ....+|++++|+|......... ..++..+.. .+.|+++|+||+|+......... .....+..
T Consensus 95 ~---~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 95 L---SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp G---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred h---hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence 1 2345999999999875322222 234444444 36899999999999753211000 01111222
Q ss_pred HhcCCCCCCeEEeeCC-CCCCHHHHHHHHHHhh
Q 024325 233 KANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA 264 (269)
Q Consensus 233 ~~~~~~~~~vi~vSa~-~g~gi~~L~~~i~~~~ 264 (269)
.... ..+++++||+ +|.|++++++.|.+.+
T Consensus 172 ~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 172 KQIG--AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHT--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHcC--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 1111 2579999999 6899999999998765
No 168
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.77 E-value=4.1e-21 Score=155.42 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=90.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|.+|+|||||+|+|++.. ......++++.+. ..... + ..+.+|||||...... +..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~ 100 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT----------ITS 100 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCC--CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC----------CSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH----------HHH
Confidence 4799999999999999999999863 1122222333332 22222 2 4689999999643210 111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
. ....+|++++|+|+........ ..++..+... +.|+++|+||+|+........ ........ ....++
T Consensus 101 ~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~~~~~~---~~~~~~ 172 (199)
T 3l0i_B 101 S---YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFAD---SLGIPF 172 (199)
T ss_dssp C-----CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS--CC-CHHHH---TTTCCB
T ss_pred H---HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH--HHHHHHHH---HcCCeE
Confidence 1 2234899999999875322111 2344444432 689999999999975422110 00111111 124689
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+++||++|.|+++++++|.+.+.
T Consensus 173 ~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 173 LETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CCCCC---HHHHHHHHHHTTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987764
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.76 E-value=1.8e-18 Score=157.53 Aligned_cols=153 Identities=20% Similarity=0.200 Sum_probs=92.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCc-----------------------cccCC------CCCceeEee---EEEeCCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------VRTSD------KPGLTQTIN---FFKLGTK 139 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~-----------------------~~~s~------~~gtt~~~~---~~~~~~~ 139 (269)
.++|+++|++|+|||||+++|+..... +.+.+ ..|+|.+.. +...+..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 468999999999999999999752110 01111 345666653 2223667
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcchHHHHHHHHhhCCc-EEEEEe
Q 024325 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVLT 211 (269)
Q Consensus 140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-------~~~~~~~~~~l~~~~~p-~iiv~N 211 (269)
+.+|||||+. .+...+......+|++++|+|+..+. ..+..+.+..+...++| +++|+|
T Consensus 123 ~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 123 FSLLDAPGHK-------------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred EEEEECCCcH-------------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 9999999973 22334445556799999999998764 24556666667777888 999999
Q ss_pred cCCCCCc----hHHHHHHHHHHHHHHhc-CCC---CCCeEEeeCCCCCCHHHHH
Q 024325 212 KTDTVFP----IDVARRAMQIEESLKAN-NSL---VQPVMMVSSKSGAGIRSLR 257 (269)
Q Consensus 212 K~Dl~~~----~~~~~~~~~~~~~~~~~-~~~---~~~vi~vSa~~g~gi~~L~ 257 (269)
|+|+... .........+.+.+... ... ..+++++||++|.|+++++
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999642 22333334444444332 111 3679999999999998744
No 170
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.75 E-value=5.3e-18 Score=157.12 Aligned_cols=154 Identities=17% Similarity=0.220 Sum_probs=94.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-EeeEE----------E---eCCcEEEEcCCCCCCcchhH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TINFF----------K---LGTKLCLVDLPGYGFAYAKE 155 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~~~----------~---~~~~~~lvDtpG~~~~~~~~ 155 (269)
....+|+++|.+|||||||+|+|++.. . ......|.. +.... . .+..+.+|||||......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~-~--~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~-- 113 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGET-F--DPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA-- 113 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCC-C--CCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH--
Confidence 445799999999999999999999873 1 122221211 11100 1 146799999999643211
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--CcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 233 (269)
+...++.. +|++++|+|++.. .....++..+.... .|+++|+||+|+....+... +.+.+...
T Consensus 114 --------~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~--~~~~~~~~ 178 (535)
T 3dpu_A 114 --------SHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ--KKINERFP 178 (535)
T ss_dssp --------TCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCH--HHHHHHCG
T ss_pred --------HHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCH--HHHHHHHH
Confidence 11223332 8999999998743 33456677776654 89999999999976433211 12222222
Q ss_pred hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
....+++++||++|.|+++|++.|.+.+..
T Consensus 179 ---~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 179 ---AIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp ---GGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred ---hcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 235689999999999999999999987654
No 171
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=147.69 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=82.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC------CceeEeeEEE-----e--CCcEEEEcCCCCCCcchhH----
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTINFFK-----L--GTKLCLVDLPGYGFAYAKE---- 155 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~------gtt~~~~~~~-----~--~~~~~lvDtpG~~~~~~~~---- 155 (269)
++|+++|++|+|||||+|+|++. ........+ ..|....... . ...+.+|||||+++.....
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT-DLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC-CC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC-CCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 67999999999999999999876 222221111 1222221111 1 2358999999996542211
Q ss_pred HHHHHHHHHHHHHHhcccc----------cceEEEEEeC-CCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHH
Q 024325 156 EVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~----------~d~vl~vid~-~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~ 224 (269)
.+..........|+..... +++++|+++. ..++...+..+++.+. .++|+|+|+||+|+....++...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~ 195 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERL 195 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHHH
Confidence 1111111111234433221 3568888876 5566666666666664 57899999999999987655443
Q ss_pred HHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325 225 AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262 (269)
Q Consensus 225 ~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~ 262 (269)
...+.+... ..+.+++++||++|.| ++.+.++.+
T Consensus 196 k~~i~~~~~---~~~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 196 KKRILDEIE---EHNIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp HHHHHHHTT---CC-CCSCCCC----------CHHHHH
T ss_pred HHHHHHHHH---HCCCCEEeCCCcCCCc-chhHHHHHH
Confidence 334433332 3357899999999988 555544443
No 172
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=7.3e-18 Score=137.97 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=74.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCccc--cCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~--~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...++|+++|++|+|||||+|+|++.. ... .+..++++.+. .+..+.+|||||+... ......
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~----------~~~~~~ 74 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS-VRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL----------RYKLSD 74 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS-CCCBCCCSSCEEETTG----GGSSCEEEECCCCGGG----------THHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC-CCCeeeecCceEEEEe----eCceEEEEECCCcHHH----------HHHHHH
Confidence 456899999999999999999999873 211 12223233222 4567999999998432 111222
Q ss_pred HHh-cccccceEEEEEeCC-C--CCCcchHHHHHHHHh------hCCcEEEEEecCCCCCchHHH
Q 024325 168 YVS-TRVSLKRVCLLIDTK-W--GVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVA 222 (269)
Q Consensus 168 ~~~-~~~~~d~vl~vid~~-~--~~~~~~~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~ 222 (269)
|+. ....+|++++|+|+. . .+......+...+.. .++|+++|+||+|+.......
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 222 223479999999997 2 222222333333322 478999999999998765433
No 173
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.73 E-value=2.6e-17 Score=147.07 Aligned_cols=159 Identities=22% Similarity=0.299 Sum_probs=104.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--Ee--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 167 (269)
...|+++|++|||||||+|+|++.. ..+++++++|...... .. ...+.++||||+....... ..+...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~------~~L~~~ 228 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG------KGLGLE 228 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS------CCSCHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhh------hhhhHH
Confidence 3579999999999999999999973 3567888887665432 22 2678999999986531110 001112
Q ss_pred HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (269)
+......++.+++++|.+ .....+ ....+.+.. ...|.++|+||+|+... . ....+.+.+.. ...+
T Consensus 229 fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~---~~~~l~~~l~~---~g~~ 300 (416)
T 1udx_A 229 FLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E---AVKALADALAR---EGLA 300 (416)
T ss_dssp HHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H---HHHHHHHHHHT---TTSC
T ss_pred HHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H---HHHHHHHHHHh---cCCe
Confidence 233344589999999986 111111 112222221 35899999999999865 2 22233333322 2468
Q ss_pred eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 242 VMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 242 vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
++++||++++|+++|+++|.+.+..
T Consensus 301 vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 301 VLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEECCCccCHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 174
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.72 E-value=1.4e-17 Score=145.94 Aligned_cols=156 Identities=18% Similarity=0.143 Sum_probs=96.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCCceeE----------------------------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQT---------------------------------- 130 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~gtt~~---------------------------------- 130 (269)
...+.|+++|++|+|||||+|.|++. ..+..++..++++..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 34678999999999999999999742 123333333333220
Q ss_pred ---ee-----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh
Q 024325 131 ---IN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 202 (269)
Q Consensus 131 ---~~-----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~ 202 (269)
.. ....+..+.+|||||+.... .. . ...+|.+++|+|++.+..... +.. ...
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~---------~~----~---~~~aD~vl~Vvd~~~~~~~~~---l~~-~~~ 193 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE---------TE----V---ARMVDCFISLQIAGGGDDLQG---IKK-GLM 193 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---------HH----H---HTTCSEEEEEECC------CC---CCH-HHH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH---------HH----H---HHhCCEEEEEEeCCccHHHHH---HHH-hhh
Confidence 00 00125689999999986421 01 1 134999999999864322111 000 112
Q ss_pred CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC----CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 203 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.|.++|+||+|+............+.+.+..... +..+++++||++|.|+++|+++|.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999998754444444445444433221 1457899999999999999999988654
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.72 E-value=3.9e-17 Score=150.56 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=78.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCcc--------------ccC------CCCCceeEe---eEEEeCCcEEEEcCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQTI---NFFKLGTKLCLVDLPGYG 149 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~--------------~~s------~~~gtt~~~---~~~~~~~~~~lvDtpG~~ 149 (269)
++|+++|++|+|||||+|+|+...... .+. ...|+|... .+...+..+.+|||||+.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 589999999999999999998641100 011 122333222 233346789999999984
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~ 219 (269)
+-. ......+..+|.+++|+|+..+...+...++..+...++|+++|+||+|+....
T Consensus 94 df~-------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 94 DFS-------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp TCC-------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred hHH-------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 321 112223445999999999998887777778887777789999999999998653
No 176
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.71 E-value=9e-17 Score=135.15 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=57.8
Q ss_pred ccceEEEEEeCCCC--CCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325 174 SLKRVCLLIDTKWG--VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246 (269)
Q Consensus 174 ~~d~vl~vid~~~~--~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS 246 (269)
.+|++++|+|++.. ..... ..++..+. ..++|+++|+||+|+....... ......... ...+++++|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~~~~--~~~~~~e~S 235 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR----DAHTFALSK--KNLQVVETS 235 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH----HHHHHHHTS--SSCCEEECB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHH----HHHHHHHhc--CCCeEEEEE
Confidence 48999999999764 22222 23333332 2478999999999997543332 222222221 246899999
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q 024325 247 SKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 247 a~~g~gi~~L~~~i~~~~~ 265 (269)
|++|.|+++++++|.+.+.
T Consensus 236 Ak~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 236 ARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 9999999999999988764
No 177
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.71 E-value=1.1e-16 Score=135.82 Aligned_cols=123 Identities=21% Similarity=0.181 Sum_probs=85.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++. ....+++.+++|.+.... ..+..+.+|||||+.+...... ..+.. ...|
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~--~~~~~-i~~~ 114 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND--MALNI-IKSF 114 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH--HHHHH-HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchH--HHHHH-HHHH
Confidence 479999999999999999999998 556678888888765432 2356799999999865421111 11111 2222
Q ss_pred HhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh-C----CcEEEEEecCCCCCch
Q 024325 169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI 219 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~-~----~p~iiv~NK~Dl~~~~ 219 (269)
+. ...+|++++|+|... .+...+..++..+... + .|+++|+||+|+.++.
T Consensus 115 ~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 22 235899999987753 3444556677766543 2 6999999999998654
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.70 E-value=2.5e-17 Score=145.29 Aligned_cols=160 Identities=23% Similarity=0.265 Sum_probs=98.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-----------------------------------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ----------------------------------------- 129 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~----------------------------------------- 129 (269)
..|.|+++|.+|||||||+|+|+|. .....+.. .+|+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~-~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK-DFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS-CCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC-CcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 5689999999999999999999996 22111110 0110
Q ss_pred -------------Ee---eEE-EeCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-C
Q 024325 130 -------------TI---NFF-KLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-V 188 (269)
Q Consensus 130 -------------~~---~~~-~~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~ 188 (269)
+. ... .....+.+|||||+..... .......+..+...|+.. +|++++++|+... .
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~ 187 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDL 187 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCG
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCc
Confidence 00 000 1134689999999876421 122333445555666554 8999999986532 2
Q ss_pred Ccc-hHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHH
Q 024325 189 KPR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 260 (269)
Q Consensus 189 ~~~-~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i 260 (269)
... ...++..+...+.|+++|+||+|+.++.... ...+.. .......+++.+|++++.|+++.+.++
T Consensus 188 ~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--~~~~~~---~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDA--VEILEG---RSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCS--HHHHTT---SSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred CCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccH--HHHHcC---ccccccCCeEEEEECChHHhccCCCHH
Confidence 222 2445555555678999999999998653211 111111 112335789999999999888765543
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=3.3e-17 Score=155.67 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=79.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcC-cc---------ccCC------CCCceeEee---EEEeCCcEEEEcCCCCCC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VV---------RTSD------KPGLTQTIN---FFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~---------~~s~------~~gtt~~~~---~~~~~~~~~lvDtpG~~~ 150 (269)
...++|+++|++|+|||||+|+|++... .. .+.+ .+++|.... +...+..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4467999999999999999999985211 00 0111 234443332 223367799999999854
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
-. .....++. .+|++++|+|+..+...++..++..+...++|+++|+||+|+...
T Consensus 88 f~----------~~~~~~l~---~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FT----------VEVERSLR---VLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CC----------HHHHHHHH---HCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred hH----------HHHHHHHH---HCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 21 01112222 299999999999888888888888888889999999999999864
No 180
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.70 E-value=7.9e-17 Score=149.21 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=92.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcCcc--ccCCCCCceeEeeEEEeC------------------------------
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKLG------------------------------ 137 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~--~~s~~~gtt~~~~~~~~~------------------------------ 137 (269)
...+.|+++|.+|+|||||+|+|++. ... .+++.|+|++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~-~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQ-EVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTS-CCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC-ccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45689999999999999999999998 443 577778776543221110
Q ss_pred ------------CcEEEEcCCCCCCcchhHHHHHH--HHHHHHHHHhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh
Q 024325 138 ------------TKLCLVDLPGYGFAYAKEEVKDA--WEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS 202 (269)
Q Consensus 138 ------------~~~~lvDtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~ 202 (269)
..+.||||||+...... .+... +......+.. .+|++++|+|+.. +....+..+++.+...
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~-~~~~~~~f~~~~~~~l~---~aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQ-RVSRGYDFPAVLRWFAE---RVDLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHH---HCSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred cceEEeccccccCCEEEEECcCCCCcchh-HHHHHhhHHHHHHHHHH---hCCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 36899999998652110 00000 1222223332 3999999999976 4566667777777777
Q ss_pred CCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 203 QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 203 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+.|+++|+||+|+.+..++......+.
T Consensus 218 ~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp GGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 789999999999998777666555544
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.69 E-value=2.2e-16 Score=149.45 Aligned_cols=113 Identities=24% Similarity=0.313 Sum_probs=79.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc----cc------cCC------CCCce---eEeeEEEeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VR------TSD------KPGLT---QTINFFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~----~~------~s~------~~gtt---~~~~~~~~~~~~~lvDtpG~~~~ 151 (269)
...+|+++|++|+|||||+++|++.... .. ..+ ..+.| ....+...+..+.+|||||+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4568999999999999999999854211 00 000 01222 22233344667999999997431
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~ 216 (269)
......+++ .+|.+++|+|+..+...+...++..+...++|+++|+||+|+.
T Consensus 88 ----------~~~~~~~l~---~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 ----------VGEIRGALE---AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp ----------HHHHHHHHH---HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ----------HHHHHHHHh---hcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 111122222 3999999999988888888888888888899999999999997
No 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.69 E-value=6.5e-17 Score=136.56 Aligned_cols=122 Identities=23% Similarity=0.247 Sum_probs=83.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|.+|+|||||+|+|++. ....+++++++|.+.... ..+..+.+|||||+.+...... .. ......+
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~--~~-~~~i~~~ 111 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNH--QA-LELIKGF 111 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECH--HH-HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchH--HH-HHHHHHH
Confidence 468999999999999999999998 556788888887765432 3466899999999865421111 11 1112222
Q ss_pred HhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh-C----CcEEEEEecCCCCCc
Q 024325 169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFP 218 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~-~----~p~iiv~NK~Dl~~~ 218 (269)
+. ...+|++++|++... .+...+..+++.+... + .|+++|+||+|+.++
T Consensus 112 l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred Hh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 22 235899999987653 3444555677776653 2 499999999999643
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=3.5e-16 Score=148.77 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=79.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC-cc---------ccCC------CCCceeEee---EEEeC-------CcEEEEc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VV---------RTSD------KPGLTQTIN---FFKLG-------TKLCLVD 144 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~---------~~s~------~~gtt~~~~---~~~~~-------~~~~lvD 144 (269)
..++|+++|++|+|||||+++|+.... .. .+.+ ..|+|.... +...+ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 457999999999999999999975311 00 0111 234444332 22223 6799999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 145 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 145 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
|||+.+- ......++ ..+|.+++|+|+..+...+...++..+...++|+++|+||+|+...
T Consensus 89 TPG~~df----------~~~~~~~l---~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDF----------TIEVERSM---RVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccch----------HHHHHHHH---HHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 9998431 11112222 2399999999999887777777777777789999999999999754
No 184
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.69 E-value=1.4e-16 Score=134.15 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=101.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh-----cCcCccccCCCCCc----------------eeEee-----------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGL----------------TQTIN----------------- 132 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~-----~~~~~~~~s~~~gt----------------t~~~~----------------- 132 (269)
..+.++++|.+|+|||||++.|. +. ++..+...++. +++..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 34789999999999999999998 55 45555444431 11100
Q ss_pred ------------EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHH-H----
Q 024325 133 ------------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-L---- 195 (269)
Q Consensus 133 ------------~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~-~---- 195 (269)
....+..+.+|||||...... +..+.......... +++++++|+.......+.. .
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~-------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFL-------FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH-------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh-------hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 000134799999999733110 01111222233355 8899999986544433321 1
Q ss_pred HHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH------HH------------------HHhcCCCCCCeEEeeCCCCC
Q 024325 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE------ES------------------LKANNSLVQPVMMVSSKSGA 251 (269)
Q Consensus 196 ~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~------~~------------------~~~~~~~~~~vi~vSa~~g~ 251 (269)
.......+.|+++|+||+|+....+.......+. +. .... ....+++++||++|+
T Consensus 164 ~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~ 242 (262)
T 1yrb_A 164 LLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTRE 242 (262)
T ss_dssp HHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCT
T ss_pred HHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcc
Confidence 1223345789999999999987643322222111 01 1111 123478999999999
Q ss_pred CHHHHHHHHHHhhhhh
Q 024325 252 GIRSLRTVLSKIARFA 267 (269)
Q Consensus 252 gi~~L~~~i~~~~~~~ 267 (269)
|+++|+++|.+.+...
T Consensus 243 gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 243 GFEDLETLAYEHYCTC 258 (262)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc
Confidence 9999999999887653
No 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.68 E-value=2.9e-16 Score=126.75 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=93.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-eC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
.++|+++|++|||||||+|+|++........+..++........ .+ ..+.+|||||.... ..+...+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------~~~~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRITSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh----------hhhhHHH
Confidence 36899999999999999999998731111112222222222222 22 35778999996321 1111222
Q ss_pred HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 244 (269)
.. .++++++|+|......... ..++..+.. .+.|+++|+||+|+........ ......... ...+++.
T Consensus 75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~--~~a~~l~~~---~~~~~~d 146 (199)
T 2f9l_A 75 YR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--DEARAFAEK---NNLSFIE 146 (199)
T ss_dssp HT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred Hh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH--HHHHHHHHH---cCCeEEE
Confidence 22 3789999999875322222 233333333 3679999999999964221100 011111111 2467899
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||+++.|+++++++|.+.+.
T Consensus 147 ~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 147 TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987763
No 186
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.68 E-value=1.9e-16 Score=150.48 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=77.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcC-c---cc------cCC------CCCceeEee---EEEeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-V---VR------TSD------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~---~~------~s~------~~gtt~~~~---~~~~~~~~~lvDtpG~~~~ 151 (269)
..++|+++|++|+|||||+|+|+.... . .. +.+ ..++|.... +...+..+.+|||||+.+-
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 346899999999999999999984210 0 00 111 233443332 2233678999999998431
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
......++. .+|.+++|+|+..+...+....+..+...++|+++|+||+|+...
T Consensus 91 ----------~~~~~~~l~---~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 91 ----------TIEVERSMR---VLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ----------HHHHHHHHH---HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ----------HHHHHHHHH---HCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 111122222 399999999999888888778888888889999999999999864
No 187
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.4e-16 Score=126.26 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=77.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 168 (269)
...++|+++|.+|+|||||+|+|++... ....+..++++.+. .+..+.+|||||...... .+.....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~------~~~~~~~-- 113 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRY------KLSDYLK-- 113 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSC------CHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHH------HHHHHHH--
Confidence 4567999999999999999999998731 11123333344332 466799999999854311 1111111
Q ss_pred HhcccccceEEEEEeCCCCCCcch---HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325 169 VSTRVSLKRVCLLIDTKWGVKPRD---HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (269)
Q Consensus 169 ~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 233 (269)
.....+|++++|+|+........ ..+...+.. .+.|+++|+||+|+..........+.+.+.+.
T Consensus 114 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 114 -TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 186 (193)
T ss_dssp -HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred -hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHH
Confidence 22234899999999872111111 122222221 37899999999999987666666655554443
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.68 E-value=2.9e-16 Score=145.28 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=85.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCc----c----------ccCC------CCCce---eEeeEEEeCCcEEEEcCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGV----V----------RTSD------KPGLT---QTINFFKLGTKLCLVDLPGYG 149 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~----~----------~~s~------~~gtt---~~~~~~~~~~~~~lvDtpG~~ 149 (269)
.+|+|+|+.++|||||..+|+-.... . .+.+ ..|.| .-+.+.+.+..++|+||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 38999999999999999998632110 0 0111 11111 112344567889999999984
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (269)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 229 (269)
+ +..+..+.+..+|.+++|+|+..+...+...+++.+...++|.++++||+|+.... .......++
T Consensus 112 D-------------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad-~~~~~~~i~ 177 (548)
T 3vqt_A 112 D-------------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH-PLDVMADIE 177 (548)
T ss_dssp G-------------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC-HHHHHHHHH
T ss_pred H-------------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc-hhHhhhhhh
Confidence 3 22233334445999999999999999999999999999999999999999997542 333333443
Q ss_pred H
Q 024325 230 E 230 (269)
Q Consensus 230 ~ 230 (269)
+
T Consensus 178 ~ 178 (548)
T 3vqt_A 178 Q 178 (548)
T ss_dssp H
T ss_pred h
Confidence 3
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=140.15 Aligned_cols=170 Identities=18% Similarity=0.247 Sum_probs=87.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccC------CCCCcee-Eee-EE----EeCCcEEEEcCCCCCCcchh----H
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS------DKPGLTQ-TIN-FF----KLGTKLCLVDLPGYGFAYAK----E 155 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s------~~~gtt~-~~~-~~----~~~~~~~lvDtpG~~~~~~~----~ 155 (269)
.+.|+++|++|+|||||+|.|++... ...+ ..+.++. +.. +. .....+.+|||||++..... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~-~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDL-YSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCC-CCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCC-CCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 36799999999999999999998732 1111 0111221 111 10 11235889999999754211 1
Q ss_pred HHHHHHHHHHHHHHhc--------c--cccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHH
Q 024325 156 EVKDAWEELVKEYVST--------R--VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (269)
Q Consensus 156 ~~~~~~~~~~~~~~~~--------~--~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~ 224 (269)
.+.+........|+.. . ..++++++++++. .++...+..++..+.. ++|+|+|+||+|+..+.++...
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~ 188 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHH
Confidence 1111111122223211 1 2245577777765 5777777778887764 7999999999999987776655
Q ss_pred HHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 225 AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 225 ~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
...+.+.+... +.+++.+||+++.++++++..|...+.+
T Consensus 189 k~~i~~~~~~~---~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 189 KKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp HHHHHHHHHHH---TCCCCCCC-----------------CCE
T ss_pred HHHHHHHHHHc---CCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 55565555443 4778999999999999988888776554
No 190
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.65 E-value=3.7e-16 Score=136.49 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCCce-------------------------------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLT------------------------------------- 128 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~gtt------------------------------------- 128 (269)
....++++|++|||||||+|.|.+. ..+...+..+.++
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 4568999999999999999999842 1233222222211
Q ss_pred eEee-----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC
Q 024325 129 QTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203 (269)
Q Consensus 129 ~~~~-----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~ 203 (269)
+++. +...+..+.|+||||++.+. . .+ ...+|.+++|+|+..+.... .+...+ ..
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~--~-------~v-------~~~~d~vl~v~d~~~~~~~~--~i~~~i--~~ 193 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSE--T-------AV-------ADLTDFFLVLMLPGAGDELQ--GIKKGI--FE 193 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCH--H-------HH-------HTTSSEEEEEECSCC--------CCTTH--HH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcch--h-------hH-------HhhCCEEEEEEcCCCcccHH--HHHHHH--hc
Confidence 1110 00136789999999997641 1 11 13489999999976331100 000001 12
Q ss_pred CcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 204 TKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 204 ~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.+.++|+||+|+...... ....+.+...+.... .+..+++++||++|.|+++|++.|.+...
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467888999998654332 222333333222121 11468999999999999999999988764
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.65 E-value=1.9e-15 Score=121.38 Aligned_cols=153 Identities=16% Similarity=0.118 Sum_probs=92.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEE-eC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~-~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
.++|+++|++|||||||+|+|++... .....|.++.+. .... .+ ..+.+|||||..... .+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~--~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~ 96 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF--NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AITS 96 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhhH
Confidence 46899999999999999999998732 122223222222 1222 23 245679999975321 1112
Q ss_pred HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (269)
.+.. .++.+++|+|......... ..++..+.. ...|+++|+||+|+....... .......... ...++
T Consensus 97 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~~~---~~~~~ 168 (191)
T 1oix_A 97 AYYR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFAEK---NGLSF 168 (191)
T ss_dssp HHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCEE
T ss_pred HHhh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEE
Confidence 2222 2788999999764321111 123333332 357899999999986421110 0111111111 24678
Q ss_pred EEeeCCCCCCHHHHHHHHHHhh
Q 024325 243 MMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 243 i~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+.+||+++.|+++++++|.+.+
T Consensus 169 ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 169 IETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 192
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.64 E-value=2.2e-15 Score=129.86 Aligned_cols=159 Identities=12% Similarity=0.063 Sum_probs=95.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
+|+++|..|+|||||++++.+... .......+.|-...+. .....+.+|||||......+ .| ....|++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~-----~l--~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEP-----SY--DSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCC-----SH--HHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEEccEEEEEEEECCCchhccch-----hh--hhhhhccC
Confidence 489999999999999999887521 1111111222222221 23467999999998542100 00 12344443
Q ss_pred ccccceEEEEEeCCCCCCcchHHHHHHH---Hh--hCCcEEEEEecCCCCCchHHHHHHHHHHHH-HHhcCC-----CCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRDHELISLM---ER--SQTKYQVVLTKTDTVFPIDVARRAMQIEES-LKANNS-----LVQ 240 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l---~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~-----~~~ 240 (269)
++++++|+|....+...-..+.+++ .. .++|+++|+||+|+.++.+.....+.+... ...+.. ...
T Consensus 73 ---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i 149 (331)
T 3r7w_B 73 ---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149 (331)
T ss_dssp ---CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred ---CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence 9999999999865222222332223 22 368999999999998765432222222221 112211 356
Q ss_pred CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 241 PVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 241 ~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
+++.+||++ .+|.+.+..|.+.+
T Consensus 150 ~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 150 SFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EEECCCSSS-SHHHHHHHHHHTTS
T ss_pred eEEEeccCC-CcHHHHHHHHHHHH
Confidence 789999998 58999999887654
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=1.9e-15 Score=130.05 Aligned_cols=167 Identities=17% Similarity=0.224 Sum_probs=84.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-------Cce-eEe-eEE----EeCCcEEEEcCCCCCCcchh----
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLT-QTI-NFF----KLGTKLCLVDLPGYGFAYAK---- 154 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-------gtt-~~~-~~~----~~~~~~~lvDtpG~~~~~~~---- 154 (269)
.++|+++|++|+|||||+|+|++. .....+..+ .+. ... .+. .....+.+|||||++.....
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~-~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT-DLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC-CccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 468999999999999999999875 222222111 111 111 111 11346899999998543110
Q ss_pred HHHHHHHHHHHHHHHhccc----------ccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325 155 EEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~----------~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~ 223 (269)
..+.+........|+.... .++++++++++. .++...+.+++..+. ...|+++|+||+|+....+...
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHH
Confidence 1111111112223333322 134466666654 347776665655553 3579999999999987655443
Q ss_pred HHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 224 RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
..+.+.+..... ..+++++||++| |+++++.++.+.+
T Consensus 176 ~~~~~~~~~~~~---~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 LKKRILDEIEEH---NIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHT---TCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHc---CCeEEecCCccc-cccHHHHHHHHHh
Confidence 334444444433 468899999999 9999998887755
No 194
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.63 E-value=2.4e-16 Score=148.57 Aligned_cols=159 Identities=23% Similarity=0.260 Sum_probs=109.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcC----cccc------CCCC------CceeE---eeEEEeCCcEEEEcCCCCCCcch
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWG----VVRT------SDKP------GLTQT---INFFKLGTKLCLVDLPGYGFAYA 153 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~----~~~~------s~~~------gtt~~---~~~~~~~~~~~lvDtpG~~~~~~ 153 (269)
.+|+|+|+.++|||||..+|+.... ...+ .+.. |.|-. +.+.+.+..++|+||||+.+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D--- 79 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD--- 79 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH---
Confidence 4799999999999999999863211 0011 1110 12211 23344578899999999854
Q ss_pred hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (269)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 233 (269)
+..+..+.+..+|.+++|+|+..+...+...+++.+...++|.++++||+|+...+ .......+++.+.
T Consensus 80 ----------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~-~~~~~~~i~~~l~ 148 (638)
T 3j25_A 80 ----------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID-LSTVYQDIKEKLS 148 (638)
T ss_dssp ----------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC-SHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC-HHHHHHHHHHHhC
Confidence 23344445556999999999999999999999999999999999999999987532 1111111111000
Q ss_pred ----------------------------------------------------------hcCCCCCCeEEeeCCCCCCHHH
Q 024325 234 ----------------------------------------------------------ANNSLVQPVMMVSSKSGAGIRS 255 (269)
Q Consensus 234 ----------------------------------------------------------~~~~~~~~vi~vSa~~g~gi~~ 255 (269)
.......|++..||+++.|++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~ 228 (638)
T 3j25_A 149 AEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDN 228 (638)
T ss_dssp CCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHH
T ss_pred CCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchh
Confidence 0011247899999999999999
Q ss_pred HHHHHHHhhh
Q 024325 256 LRTVLSKIAR 265 (269)
Q Consensus 256 L~~~i~~~~~ 265 (269)
|++.|.+.+.
T Consensus 229 LLd~i~~~~p 238 (638)
T 3j25_A 229 LIEVITNKFY 238 (638)
T ss_dssp HHHHHHHSCC
T ss_pred Hhhhhhcccc
Confidence 9999987653
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.62 E-value=5e-16 Score=127.30 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=92.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEe----------eE-------------------EEeC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTI----------NF-------------------FKLG 137 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~----------~~-------------------~~~~ 137 (269)
..+.|+++|++|+|||||+|+|++.. .++.+...++++.|. .. ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35789999999999999999998641 223333444432111 00 0113
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~ 217 (269)
..+.+|||+|.... + .++. ...+.+++|+|+..+.. .........+.|+++|+||+|+.+
T Consensus 109 ~d~iiidt~G~~~~--~------------~~~~--~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLIC--P------------VDFD--LGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSG--G------------GGCC--CSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCC--C------------chhc--cccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCCc
Confidence 45778888884111 0 0000 12577889999875422 122222334689999999999864
Q ss_pred ch--HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 218 PI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 218 ~~--~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
.. +.......+. .. ....+++++||++|.|+++|+++|.+.+.
T Consensus 169 ~~~~~~~~~~~~~~----~~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 169 AVGADVEKMKADAK----LI-NPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHTCCHHHHHHHHH----HH-CTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHH----Hh-CCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 31 2333333322 22 12468999999999999999999988764
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=2.3e-15 Score=131.89 Aligned_cols=86 Identities=24% Similarity=0.287 Sum_probs=57.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--Ee------------------CCcEEEEcCCCCCCcc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL------------------GTKLCLVDLPGYGFAY 152 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~~------------------~~~~~lvDtpG~~~~~ 152 (269)
.+|+++|.||+|||||+|+|++. . ..++++|++|.+.+.. .. +..+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~-~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA-G-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT-C-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-C-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 57999999999999999999998 3 6788999998875421 11 1469999999986542
Q ss_pred hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (269)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~ 186 (269)
... ..+...|+.....+|++++|+|++.
T Consensus 81 ~~~------~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKG------EGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccc------chHHHHHHHHHHhcCeEEEEEecCC
Confidence 110 1122233333445999999999975
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.60 E-value=1.4e-15 Score=133.91 Aligned_cols=86 Identities=24% Similarity=0.271 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE------------------------eCCcEEEEcCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------LGTKLCLVDLPGY 148 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~------------------------~~~~~~lvDtpG~ 148 (269)
++|+++|.||+|||||+|+|++. . ..++++|++|.+.+... .+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~-~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA-N-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH-H-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-C-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 46999999999999999999987 3 56788888876643221 2346999999998
Q ss_pred CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (269)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~ 186 (269)
....... ..+...++.....+|++++|+|+..
T Consensus 80 ~~~a~~~------~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKG------EGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSS------SCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccc------chHHHHHHHHHHhCCEEEEEEECCC
Confidence 6542211 0111223333345999999999975
No 198
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.59 E-value=1.4e-17 Score=147.15 Aligned_cols=136 Identities=16% Similarity=0.222 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchh-HHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVK 166 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~-~~~~~~~~~~~~ 166 (269)
.+|+++|.+|+|||||+|+|++.. ....+++.||||++......+..+.++||||+...... +.+. .....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHHH
Confidence 479999999999999999999861 24557899999999988777777999999999764211 1111 11111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHH
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 232 (269)
.+ ......+.+++++++...........++.+...+.|+++++||+|.+...+..+..+.+++.+
T Consensus 238 ~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 238 LI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp HH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred Hh-ccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence 22 223458889999988432211222223334445789999999999998877776666665543
No 199
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.58 E-value=1.8e-17 Score=146.55 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC----cCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcch-hHHHHHHHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKE 167 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~----~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~-~~~~~~~~~~~~~~ 167 (269)
.+|+++|.+|+|||||+|+|++. .....+++.||||++......+..+.++||||+..... .+.+. ......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD---ARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSC---TTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHh---HHHHHH
Confidence 47999999999999999999986 12367889999999998887777899999999975421 11110 011112
Q ss_pred HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa 247 (269)
+. ....++.+++++++...........++.+...+.|+++++||+|.+...+.....+.+++.+ +..+.+.++
T Consensus 240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~------g~~l~p~~~ 312 (369)
T 3ec1_A 240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQL------GELLSPPSK 312 (369)
T ss_dssp HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB------TTTBCSSCG
T ss_pred Hh-cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhc------CCccCCCCc
Confidence 21 22458999999998532111122223334445789999999999987766665555555443 234555555
Q ss_pred CCCCCHH
Q 024325 248 KSGAGIR 254 (269)
Q Consensus 248 ~~g~gi~ 254 (269)
....++.
T Consensus 313 ~~~~~~~ 319 (369)
T 3ec1_A 313 RYAAEFP 319 (369)
T ss_dssp GGTTTCC
T ss_pred hhhhhcc
Confidence 5555543
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.57 E-value=2e-15 Score=146.19 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=94.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCC---------------CCCceeEe---eEEEe----------------C
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTI---NFFKL----------------G 137 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~---------------~~gtt~~~---~~~~~----------------~ 137 (269)
.++|+++|++|+|||||+|+|+.... ...+. ..|.|-.. .+... +
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAG-IISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHB-CCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45899999999999999999987521 11111 12223221 11111 4
Q ss_pred CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~ 217 (269)
..+.+|||||+.+-. .....++ ..+|++++|+|+..+...++..++..+...++|+++|+||+|+..
T Consensus 98 ~~i~liDTPG~~df~----------~~~~~~l---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS----------SEVTAAL---RVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSSC----------HHHHHHH---HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhhH----------HHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 568999999986521 1112222 239999999999988888877777777777899999999999862
Q ss_pred ------chH----HHHHHHHHHHHHHhcC----------CCCCCeEEeeCCCCCCH
Q 024325 218 ------PID----VARRAMQIEESLKANN----------SLVQPVMMVSSKSGAGI 253 (269)
Q Consensus 218 ------~~~----~~~~~~~~~~~~~~~~----------~~~~~vi~vSa~~g~gi 253 (269)
+.+ .......++..+..+. ....++...|+++|+|+
T Consensus 165 ~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~ 220 (842)
T 1n0u_A 165 LELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF 220 (842)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence 222 2333344444433211 11235788999998763
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=3.7e-14 Score=135.29 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCc-c---cc------CC------CCCceeE---eeEEEe-------CCcEEEEc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V---RT------SD------KPGLTQT---INFFKL-------GTKLCLVD 144 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-~---~~------s~------~~gtt~~---~~~~~~-------~~~~~lvD 144 (269)
...+|+|+|+.++|||||..+|+..... . .+ .+ ..|.|-. +.+.+. +..++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3468999999999999999998743110 0 11 11 1122211 122221 35699999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325 145 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (269)
Q Consensus 145 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~ 218 (269)
|||+.+- ..+..+.+..+|.+++|+|+..+...+...+++.+...++|.++++||+|+...
T Consensus 92 TPGHvDF-------------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDF-------------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTC-------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred CCCCccc-------------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 9998542 222223333499999999999999999999999999999999999999998643
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=6.5e-14 Score=124.92 Aligned_cols=152 Identities=18% Similarity=0.266 Sum_probs=93.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCcc---ccCCCCCceeEee-EEEeC----CcEEEEcCCCCCCcchh----HH--
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTIN-FFKLG----TKLCLVDLPGYGFAYAK----EE-- 156 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~---~~s~~~gtt~~~~-~~~~~----~~~~lvDtpG~~~~~~~----~~-- 156 (269)
..|+++++|++|||||||+|.|+|.. +. .....++.+.... +.... ..++++|++|++..... ..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 34569999999999999999999972 21 1112344444422 22211 26899999999764221 11
Q ss_pred --HHHHHHHHHHHHHh------cccc--cc-eEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHH
Q 024325 157 --VKDAWEELVKEYVS------TRVS--LK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225 (269)
Q Consensus 157 --~~~~~~~~~~~~~~------~~~~--~d-~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~ 225 (269)
+...+..++..+.. .... +| ++++|+|+.+++...|.++++.+. .+.|+|+|+||+|.+.+.+.....
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~ 198 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFK 198 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHH
Confidence 12233333333321 1112 23 366778888888888988888887 689999999999999988877766
Q ss_pred HHHHHHHHhcCCCCCCeEEeeC
Q 024325 226 MQIEESLKANNSLVQPVMMVSS 247 (269)
Q Consensus 226 ~~~~~~~~~~~~~~~~vi~vSa 247 (269)
..+.+.+.. .+.+++++|.
T Consensus 199 ~~I~~~L~~---~gi~I~~is~ 217 (427)
T 2qag_B 199 IKITSELVS---NGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHBT---TBCCCCCCC-
T ss_pred HHHHHHHHH---cCCcEEecCC
Confidence 666654433 3466667764
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.47 E-value=3.2e-13 Score=110.80 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=42.0
Q ss_pred hCCcEEEEEecCCCCCch--HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325 202 SQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~ 266 (269)
...|.++|+||+|+.+.. ........+ ... ....+++++||++|+|+++|+++|.+.+..
T Consensus 163 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 163 MKTADLIVINKIDLADAVGADIKKMENDA----KRI-NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTTCSEEEEECGGGHHHHTCCHHHHHHHH----HHH-CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeccccCchhHHHHHHHHHHH----HHh-CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 367899999999986431 222222222 221 124689999999999999999999887654
No 204
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.44 E-value=9.1e-13 Score=111.46 Aligned_cols=141 Identities=23% Similarity=0.381 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccC-------CCCCcee--EeeEE----EeCCcEEEEcCCCCCCcchh----H
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQ--TINFF----KLGTKLCLVDLPGYGFAYAK----E 155 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-------~~~gtt~--~~~~~----~~~~~~~lvDtpG~~~~~~~----~ 155 (269)
++++++|++|||||||+|.|+|.... ..+ +.+.++. .+.+. .....++++|+||++..... .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~-~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS-RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC-CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 57999999999999999999986311 111 1122211 11111 12346899999999764221 1
Q ss_pred HHHHH----HHHHHHHHHhcc-------cccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325 156 EVKDA----WEELVKEYVSTR-------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (269)
Q Consensus 156 ~~~~~----~~~~~~~~~~~~-------~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~ 223 (269)
.+... +.......++.. .-++++++++|.. +++.+.+.++++.+... .++++|+||+|.+...+...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHH
Confidence 12211 111111111111 1257788888854 78888899999999876 99999999999999888877
Q ss_pred HHHHHHHHHHhc
Q 024325 224 RAMQIEESLKAN 235 (269)
Q Consensus 224 ~~~~~~~~~~~~ 235 (269)
....+.+.+...
T Consensus 161 ~k~~i~~~l~~~ 172 (270)
T 3sop_A 161 FKQRVRKELEVN 172 (270)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 777777766654
No 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.42 E-value=3e-12 Score=114.15 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=99.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCcc---ccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~---~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 166 (269)
...++++|++|||||||+|.|+|..... ...+...+|+....+.. ...+.++|+||++... ..+. .+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~--~~~~----~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN--FPPD----TYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS--CCHH----HHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchH--HHHH----HHHH
Confidence 3589999999999999999999952111 11111123332222222 2468999999986431 1111 2222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC---------chHHHHHHHHHHHHH----H
Q 024325 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF---------PIDVARRAMQIEESL----K 233 (269)
Q Consensus 167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~---------~~~~~~~~~~~~~~~----~ 233 (269)
.+ .+...+..++ ++... ...++..+...+...++|+++|+||.|++- +.......+.+.+.. .
T Consensus 143 ~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~ 218 (413)
T 1tq4_A 143 KM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 218 (413)
T ss_dssp HT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred Hc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 1222455554 77653 466667788888888999999999999861 112233333343332 1
Q ss_pred hcCCCCCCeEEeeC--CCCCCHHHHHHHHHHhhhhh
Q 024325 234 ANNSLVQPVMMVSS--KSGAGIRSLRTVLSKIARFA 267 (269)
Q Consensus 234 ~~~~~~~~vi~vSa--~~g~gi~~L~~~i~~~~~~~ 267 (269)
........+|++|+ ..+.|+++|.+.|.+.+...
T Consensus 219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 21111347899999 66778999999998877543
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.38 E-value=1.8e-12 Score=118.35 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=92.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh------cCcCccccCCCCC-----------------------ceeEe--------eE
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPG-----------------------LTQTI--------NF 133 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~s~~~g-----------------------tt~~~--------~~ 133 (269)
....|+++|.+|+||||+++.|. |. ++..++..+. ++.+. ..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998 54 4444333110 01110 00
Q ss_pred E-EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcE-EEEEe
Q 024325 134 F-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT 211 (269)
Q Consensus 134 ~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~-iiv~N 211 (269)
. ..+..+.||||||..... .........+.. + ..+|.+++|+|+..+.. .......+... .|+ .+|+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~~-~----i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlN 248 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQE--DSLFEEMLQVAN-A----IQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVT 248 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTC--HHHHHHHHHHHH-H----HCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEE
T ss_pred HHHCCCcEEEEeCCCCcccc--hhHHHHHHHHHh-h----hcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEe
Confidence 0 035679999999986531 111111111111 1 14899999999986532 34444444433 675 89999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHh----------c--CCCCCCeEEeeCCCCCC-HHHHHHHHHHh
Q 024325 212 KTDTVFPIDVARRAMQIEESLKA----------N--NSLVQPVMMVSSKSGAG-IRSLRTVLSKI 263 (269)
Q Consensus 212 K~Dl~~~~~~~~~~~~~~~~~~~----------~--~~~~~~vi~vSa~~g~g-i~~L~~~i~~~ 263 (269)
|+|........ .. +...+.. . .....|.+++|+..|.| +++|++++.+.
T Consensus 249 K~D~~~~~g~~--l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGGGA--LS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCTHH--HH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchHHH--HH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99998543321 11 1111100 0 00123456789999999 99999999765
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=119.79 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCCCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFA 151 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~~~ 151 (269)
..+|+++|.||+|||||+|+|++. . ..++++|++|.+.+.... +..+.+|||||+...
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~-~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS-Q-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC-C-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 468999999999999999999998 4 478899999977543221 234899999998653
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (269)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~ 186 (269)
.... ..+...+......+|++++|+|+..
T Consensus 100 as~~------~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 100 AHNG------QGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cchh------hHHHHHHHHHHHhcCeEEEEEecCC
Confidence 2110 1122233444455999999999863
No 208
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.26 E-value=5.5e-12 Score=107.34 Aligned_cols=61 Identities=33% Similarity=0.610 Sum_probs=42.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~ 152 (269)
..++|+++|.||+|||||+|+|++. ....+++.||+|++......+..+.++||||+..+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 179 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence 4578999999999999999999998 567899999999998877778889999999997653
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=4.5e-11 Score=105.87 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e-C-----------------CcEEEEcCCCCCC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGF 150 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~-~-----------------~~~~lvDtpG~~~ 150 (269)
....|+++|++|||||||+|+|++. ..+.++++|+||.+..... . + ..+.++||||+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3568999999999999999999998 5558999999998764321 1 2 2579999999865
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (269)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~ 186 (269)
.....+ .+...+......+|.+++|+|+..
T Consensus 98 ~~s~~e------~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGV------GLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSS------SSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHH------HHHHHHHHHHHHHHHHHHHHhccc
Confidence 422111 111223333445999999999864
No 210
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.09 E-value=5.2e-11 Score=100.23 Aligned_cols=59 Identities=27% Similarity=0.544 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~ 152 (269)
.+++++|.+|+|||||+|+|++. ....+++.||+|+.......+..+.+|||||+..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence 58999999999999999999998 556788999999998877777889999999998653
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.00 E-value=2.9e-10 Score=105.45 Aligned_cols=58 Identities=28% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE----eeEE------EeCCcEEEEcCCCCCCc
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFF------KLGTKLCLVDLPGYGFA 151 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~----~~~~------~~~~~~~lvDtpG~~~~ 151 (269)
..++|+++|.||+|||||+|+|+|.. ..+ +.+++|++ +..+ ..+..+.++||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~-~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK-KGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS-SCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC-Ccc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 45789999999999999999999983 322 44444433 3222 13567999999999864
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.97 E-value=1.4e-08 Score=90.95 Aligned_cols=145 Identities=16% Similarity=0.234 Sum_probs=81.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCC----------------c-------eeEee--------EE-
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPG----------------L-------TQTIN--------FF- 134 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~g----------------t-------t~~~~--------~~- 134 (269)
...|+++|.+|+||||++..|... .++..+...+. . ..+.. ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999988731 12322221111 0 00100 00
Q ss_pred EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCC
Q 024325 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (269)
Q Consensus 135 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~D 214 (269)
..+..+.++||||..... .........+ .. ...+|.+++|+|+..+ .........+...-.+..+|+||+|
T Consensus 180 ~~~~DvVIIDTaGrl~~d--~~lm~el~~i----~~-~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKED--KALIEEMKQI----SN-VIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp HTTCSEEEEECCCCSSCC--HHHHHHHHHH----HH-HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred hCCCCEEEEECCCcccch--HHHHHHHHHH----HH-hhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCC
Confidence 014679999999975431 1111111111 11 1237899999998753 2223444444444455679999999
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L 256 (269)
......... .... ....|+.+++. |+++++|
T Consensus 251 ~~~~gG~~l------s~~~---~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 251 GSAKGGGAL------SAVA---ATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp SCSSHHHHH------HHHH---TTCCCEEEEEC--SSSTTCE
T ss_pred CcccccHHH------HHHH---HHCCCEEEEEc--CCChHHh
Confidence 876543211 1111 23678988886 7777654
No 213
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.95 E-value=5.4e-09 Score=90.36 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC-------CCCCcc-hH---HHHHHHHh----
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVKPR-DH---ELISLMER---- 201 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~-------~~~~~~-~~---~~~~~l~~---- 201 (269)
+..+.+|||+|.. ............++++++|+|.+ +.-... -. .+++.+..
T Consensus 166 ~v~l~iwDtgGQe-------------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQR-------------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSH-------------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCch-------------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 4568899999961 11112223344599999999765 111111 11 23333322
Q ss_pred hCCcEEEEEecCCCCCc------------------hHHHHHHHHHHHHHHhcC---CCCCCeEEeeCCCCCCHHHHHHHH
Q 024325 202 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVL 260 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~vi~vSa~~g~gi~~L~~~i 260 (269)
.++|+++++||+|+... .+.+...+.+...+.... .......++||+++.|++.+++.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 36899999999998642 234444555555444332 123456789999999999999999
Q ss_pred HHhhh
Q 024325 261 SKIAR 265 (269)
Q Consensus 261 ~~~~~ 265 (269)
.+.+-
T Consensus 313 ~~~Il 317 (327)
T 3ohm_A 313 KDTIL 317 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.93 E-value=1.5e-09 Score=97.41 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCC------------------------CCceeEee-E------EE
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK------------------------PGLTQTIN-F------FK 135 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~------------------------~gtt~~~~-~------~~ 135 (269)
...|+++|.+|+||||+++.|.... ++..++.. ++++++.. . ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999987631 22222211 11333321 0 01
Q ss_pred eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-c-EEEEEecC
Q 024325 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKT 213 (269)
Q Consensus 136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p-~iiv~NK~ 213 (269)
.+..+.++||||.... + ......+ .. ......+|.+++|+|+..+. ........+.. .. | ..+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~---~--~~l~~~l-~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---E--KGLLEEM-KQ-IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSS---H--HHHHHHH-HH-TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccc---c--HHHHHHH-HH-HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCC
Confidence 3667999999998542 1 1111222 11 22333589999999987542 22233333332 35 6 88999999
Q ss_pred CCCCc
Q 024325 214 DTVFP 218 (269)
Q Consensus 214 Dl~~~ 218 (269)
|....
T Consensus 249 D~~~~ 253 (432)
T 2v3c_C 249 DGSAK 253 (432)
T ss_dssp SSCST
T ss_pred CCccc
Confidence 98753
No 215
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.92 E-value=1.3e-08 Score=81.74 Aligned_cols=166 Identities=13% Similarity=0.080 Sum_probs=88.4
Q ss_pred CCCcEEEEEcC-CCCChHHHHHHHhcCcCccccCCCC-----CceeEe----------eEEEe-----------------
Q 024325 90 PDLPEIAFAGR-SNVGKSSMLNALTRQWGVVRTSDKP-----GLTQTI----------NFFKL----------------- 136 (269)
Q Consensus 90 ~~~~~v~ivG~-~~~GKSsLin~l~~~~~~~~~s~~~-----gtt~~~----------~~~~~----------------- 136 (269)
...|+++++|+ -..=+.+|+.+|.....+.++...| |....+ +..+.
T Consensus 14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~ 93 (227)
T 3l82_B 14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 93 (227)
T ss_dssp CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------------
T ss_pred CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhh
Confidence 55689999997 3445568998888764344333322 111111 11110
Q ss_pred -CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHH---HHHHHh----hCCcEE
Q 024325 137 -GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HEL---ISLMER----SQTKYQ 207 (269)
Q Consensus 137 -~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~---~~~l~~----~~~p~i 207 (269)
..++....+||-...-.++.++..|..+... +|++|||||+++...... .++ ...+.. .+.|++
T Consensus 94 ~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~-------TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLL 166 (227)
T 3l82_B 94 AVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEV-------VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166 (227)
T ss_dssp -----------------------CCHHHHHHH-------CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEE
T ss_pred hhhhcccccCCCccccCcHHHHHHHHHHHhcC-------CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEE
Confidence 1234555666522222345566667665544 999999999986422222 233 233322 357999
Q ss_pred EEEecC-CCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 208 VVLTKT-DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 208 iv~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
|..||. |+..+....+..+.+. +... ...+.+.++||++|+||.+-++||.+.+.
T Consensus 167 VlANKqqDlp~Ams~~EI~e~L~--L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 167 VLSCISQGDVKRMPCFYLAHELH--LNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp EEEEESSTTSCBCCHHHHHHHTT--GGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred EEeCCCcCccCCCCHHHHHHHcC--CcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 999995 7765544444433332 1112 13566899999999999999999988764
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=7e-09 Score=88.10 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=66.2
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245 (269)
Q Consensus 166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 245 (269)
+.+......+|++++|+|+..+.......+-+++ .++|.++|+||+|+.++........ .+.. .+.+++++
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~----~~~~---~g~~~i~i 85 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKE----HFEN---QGIRSLSI 85 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHH----HHHT---TTCCEEEC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHH----HHHh---cCCcEEEE
Confidence 3444455669999999999987776655554544 4789999999999997543322222 2221 24689999
Q ss_pred eCCCCCCHHHHHHHHHHhhh
Q 024325 246 SSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 246 Sa~~g~gi~~L~~~i~~~~~ 265 (269)
||++|.|+++|++.|.+.+.
T Consensus 86 SA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 86 NSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp CTTTCTTGGGHHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHHHHHH
Confidence 99999999999998887654
No 217
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.86 E-value=3.6e-08 Score=88.27 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=79.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCC----------------CCc-------eeEee--------EE-
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK----------------PGL-------TQTIN--------FF- 134 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~----------------~gt-------t~~~~--------~~- 134 (269)
...|+++|++|+||||++..|.... ++..+... .+. ..+.. ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4578999999999999999887310 22111100 010 00100 00
Q ss_pred EeCCcEEEEcCCCCCCc-chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecC
Q 024325 135 KLGTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (269)
Q Consensus 135 ~~~~~~~lvDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~ 213 (269)
..++.+.++||||.... ....... ....+. ... ..+.+++|+|+..+ .......+.+...-.+..+|+||+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~-el~~i~----~~~-~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKl 248 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLE-EMKEMY----DVL-KPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKM 248 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHH-HHHHHH----HHH-CCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECG
T ss_pred hcCCCEEEEECCCCccccCCHHHHH-HHHHHH----Hhh-CCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecc
Confidence 02567999999996431 1111111 111111 111 26889999999753 223345555554446688999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHH
Q 024325 214 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 254 (269)
Q Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~ 254 (269)
|........ ..... . ...|+.+++. |++++
T Consensus 249 D~~a~~G~a--ls~~~-~------~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 249 DGTAKGGGA--LSAVV-A------TGATIKFIGT--GEKID 278 (433)
T ss_dssp GGCSCHHHH--HHHHH-H------HTCEEEEEEC--CSSSS
T ss_pred cccccchHH--HHHHH-H------HCCCEEEEEC--CCChH
Confidence 987543321 11111 1 1578989986 77764
No 218
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.84 E-value=9.3e-09 Score=89.24 Aligned_cols=116 Identities=11% Similarity=0.040 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcc-hH---HHHHHHHh----
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPR-DH---ELISLMER---- 201 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~-~~---~~~~~l~~---- 201 (269)
+..+.+|||+|.. .+.. .+......++++++|+|.+.- .... -. .++..+..
T Consensus 160 ~v~l~iwDtaGQe----------~~R~---~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGGQR----------SERK---XWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCSCH----------HHHH---HHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCCcc----------cccc---cHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 5568999999961 1122 223334559999999998721 0111 11 22222222
Q ss_pred hCCcEEEEEecCCCCCc-----------------hHHHHHHHHHHHHH------HhcCC--------------CCCCeEE
Q 024325 202 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESL------KANNS--------------LVQPVMM 244 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~~~~~~------~~~~~--------------~~~~vi~ 244 (269)
.++|+++++||+|+... ...++..+.+.+.+ ..... ....+.+
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 36899999999998631 12334445555544 11110 1245689
Q ss_pred eeCCCCCCHHHHHHHHHHhhh
Q 024325 245 VSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 245 vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+||++..|++.+|+.+.+.+-
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHH
Confidence 999999999999998887653
No 219
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.82 E-value=2.6e-08 Score=93.36 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=45.5
Q ss_pred CcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhhCCcEEEEEecC
Q 024325 138 TKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERSQTKYQVVLTKT 213 (269)
Q Consensus 138 ~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~~~p~iiv~NK~ 213 (269)
+.+.++|.||+..... .......+..+...|... .-.++++++++....... ...++..+...+.+.|+|+||+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~--~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR--QETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS--SSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc--CCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence 5689999999875311 112233344555555433 134566666655433322 2455566655678999999999
Q ss_pred CCCCch
Q 024325 214 DTVFPI 219 (269)
Q Consensus 214 Dl~~~~ 219 (269)
|++...
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998653
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.80 E-value=1.5e-08 Score=86.84 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=60.5
Q ss_pred ccccceEEEEEeCCCCC-Ccch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 172 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~-~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
..++|.+++|+|+.++. .... ..++..+...++|+++|+||+|+.++.+... .....+.... .+.+++++||++
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~---~g~~~~~~SA~~ 152 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE-LERWISIYRD---AGYDVLKVSAKT 152 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHH---TTCEEEECCTTT
T ss_pred HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH-HHHHHHHHHH---CCCeEEEEECCC
Confidence 45599999999998653 3221 3455566667899999999999987542111 1222222222 246899999999
Q ss_pred CCCHHHHHHHHHH
Q 024325 250 GAGIRSLRTVLSK 262 (269)
Q Consensus 250 g~gi~~L~~~i~~ 262 (269)
|.|+++|++.+..
T Consensus 153 g~gi~~L~~~l~G 165 (302)
T 2yv5_A 153 GEGIDELVDYLEG 165 (302)
T ss_dssp CTTHHHHHHHTTT
T ss_pred CCCHHHHHhhccC
Confidence 9999999988754
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.77 E-value=3.1e-08 Score=84.88 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=59.0
Q ss_pred ccccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
..++|++++|+|+..+..... ..++..+...++|+++|+||+|+.+.....+ ..+....+... .+++++||++
T Consensus 82 ~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~----~~~~~~~~~~~-~~~~~~SAkt 156 (301)
T 1u0l_A 82 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK----VRELEEIYSGL-YPIVKTSAKT 156 (301)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH----HHHHHHHHTTT-SCEEECCTTT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHH----HHHHHHHHhhh-CcEEEEECCC
Confidence 345999999999986432221 3445555556899999999999986543211 12222222222 6899999999
Q ss_pred CCCHHHHHHHHHH
Q 024325 250 GAGIRSLRTVLSK 262 (269)
Q Consensus 250 g~gi~~L~~~i~~ 262 (269)
|.|++++++++..
T Consensus 157 g~gv~~lf~~l~g 169 (301)
T 1u0l_A 157 GMGIEELKEYLKG 169 (301)
T ss_dssp CTTHHHHHHHHSS
T ss_pred CcCHHHHHHHhcC
Confidence 9999999988754
No 222
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.72 E-value=1e-08 Score=90.07 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------c-ch---HHHHHHHHh----
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------P-RD---HELISLMER---- 201 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~-------~-~~---~~~~~~l~~---- 201 (269)
+..+.+|||+|... ...........++++++|+|.+...+ . .- ..++..+..
T Consensus 200 ~~~l~i~Dt~Gq~~-------------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRS-------------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhh-------------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 56789999999732 11122233446999999999985211 1 11 123333322
Q ss_pred hCCcEEEEEecCCCCCc------------------hHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHH
Q 024325 202 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTV 259 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~------------------~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~ 259 (269)
.+.|+++|+||+|+... .........+...+.... .....++++||++|+|+++++++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 36899999999998521 223333333333332221 22456789999999999999999
Q ss_pred HHHhhh
Q 024325 260 LSKIAR 265 (269)
Q Consensus 260 i~~~~~ 265 (269)
+.+.+.
T Consensus 347 v~~~i~ 352 (362)
T 1zcb_A 347 VKDTIL 352 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 223
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.72 E-value=7.3e-09 Score=90.64 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------c-chH---HHHHHHHh----
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------P-RDH---ELISLMER---- 201 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~-------~-~~~---~~~~~l~~---- 201 (269)
+..+.+|||+|...- +..| ......++++++|+|.+...+ . .-. .+++.+..
T Consensus 192 ~~~l~iwDt~GQe~~------r~~w-------~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE------RKKW-------IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG------GGGG-------GGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh------hHHH-------HHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 567899999997321 1111 223345999999999875211 1 112 23333332
Q ss_pred hCCcEEEEEecCCCCCc-----------------hHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHH
Q 024325 202 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVL 260 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i 260 (269)
.+.|+++|+||+|+... ....+....+...+.... .....++++||++|.|++++++++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 36899999999998521 122333333433332221 234568899999999999999999
Q ss_pred HHhhh
Q 024325 261 SKIAR 265 (269)
Q Consensus 261 ~~~~~ 265 (269)
.+.+.
T Consensus 339 ~~~i~ 343 (353)
T 1cip_A 339 TDVII 343 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 224
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.71 E-value=4e-08 Score=86.62 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=58.9
Q ss_pred cceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 253 (269)
Q Consensus 175 ~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi 253 (269)
++++++|+|+.+........+.+.+ .++|+++|+||+|+.+... .....+.+...+........+++.+||++|+|+
T Consensus 72 ~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi 149 (369)
T 3ec1_A 72 KALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGM 149 (369)
T ss_dssp CCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTH
T ss_pred CcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCH
Confidence 7899999999864433322333332 2689999999999987532 222233333333332211237899999999999
Q ss_pred HHHHHHHHHhhh
Q 024325 254 RSLRTVLSKIAR 265 (269)
Q Consensus 254 ~~L~~~i~~~~~ 265 (269)
++|++.|.+...
T Consensus 150 ~~L~~~I~~~~~ 161 (369)
T 3ec1_A 150 AKVMEAINRYRE 161 (369)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhcc
Confidence 999999987543
No 225
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.70 E-value=3.9e-08 Score=86.61 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh--hCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcC
Q 024325 160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANN 236 (269)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 236 (269)
.+..+...+.+. .+++++|+|+.+.. ..+...+.. .++|+++|+||+|+.+... .....+.+........
T Consensus 58 ~f~~~l~~i~~~---~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 58 DFLRILNGIGKS---DALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp HHHHHHHHHHHS---CCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc---CcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 344555555443 78999999997521 222222222 3689999999999986532 2222223333333322
Q ss_pred CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325 237 SLVQPVMMVSSKSGAGIRSLRTVLSKIA 264 (269)
Q Consensus 237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~~ 264 (269)
....+++.+||++|+|+++|++.|.+..
T Consensus 131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 131 LKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 1123789999999999999999997654
No 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.56 E-value=3.3e-07 Score=77.06 Aligned_cols=101 Identities=9% Similarity=-0.001 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HH---HHHHHHh----hCCcEEEEEec-CCCCCchHHHHHH
Q 024325 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HE---LISLMER----SQTKYQVVLTK-TDTVFPIDVARRA 225 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~---~~~~l~~----~~~p~iiv~NK-~Dl~~~~~~~~~~ 225 (269)
+.++..|..+... .|++|||||+++...... .+ +...+.. .+.|++|..|| -|+..+....++.
T Consensus 198 ~~lRplWr~Yy~~-------tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~ 270 (312)
T 3l2o_B 198 YSVIPQIQKVCEV-------VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLA 270 (312)
T ss_dssp CCCCHHHHHHHHH-------CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHH
T ss_pred HHHHHHHHHHhcC-------CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHH
Confidence 3455667655544 999999999986432222 11 2233321 47899999997 5887655444444
Q ss_pred HHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325 226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 226 ~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
+.+. +... .....+.++||.+|+|+.+-++||.+.+.
T Consensus 271 e~L~--L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELH--LNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTT--GGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcC--CccC-CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 3332 1111 12456899999999999999999998764
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.55 E-value=5.5e-08 Score=81.66 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=57.7
Q ss_pred hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
.....+|++++|+|+..+.......+- .+ ++|.++|+||+|+.++.........+ .. .+.++ ++||++
T Consensus 17 ~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~----~~---~g~~v-~iSa~~ 84 (262)
T 3cnl_A 17 DLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFF----KK---QGKRV-ITTHKG 84 (262)
T ss_dssp HHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHH----HH---TTCCE-EECCTT
T ss_pred HHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHH----HH---cCCeE-EEECCC
Confidence 334559999999999876655432222 22 89999999999999764433322222 22 24678 999999
Q ss_pred CCCHHHHHHHHHHh
Q 024325 250 GAGIRSLRTVLSKI 263 (269)
Q Consensus 250 g~gi~~L~~~i~~~ 263 (269)
|.|+++|++.|...
T Consensus 85 ~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 85 EPRKVLLKKLSFDR 98 (262)
T ss_dssp SCHHHHHHHHCCCT
T ss_pred CcCHHHHHHHHHHh
Confidence 99999999887653
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.55 E-value=3.6e-07 Score=78.02 Aligned_cols=147 Identities=17% Similarity=0.189 Sum_probs=78.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCC-----------------------ceeEe--------eEEE
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG-----------------------LTQTI--------NFFK 135 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~g-----------------------tt~~~--------~~~~ 135 (269)
...++++|++|+||||++..|.+.. ++..+...+. ...+. ....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999998877321 2221111100 00010 0001
Q ss_pred -eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecC
Q 024325 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT 213 (269)
Q Consensus 136 -~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~ 213 (269)
.++.+.++||||.......+........+. . ...+|.+++|+|+..+ .......+.+.. ..| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~-~----~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIY-E----AIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHH-H----HHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHH-H----HhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence 356799999999754100111111111111 1 1138899999998632 222333344433 466 77899999
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325 214 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257 (269)
Q Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~ 257 (269)
|....... . ..... ....|+.+++ +|+++++|.
T Consensus 250 D~~~~~g~--~----~~~~~---~~~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 250 DGTAKGGG--A----LSAVA---ATGATIKFIG--TGEKIDELE 282 (297)
T ss_dssp GGCTTHHH--H----HHHHH---TTTCCEEEEE--CSSSTTCEE
T ss_pred CCCcchHH--H----HHHHH---HHCcCEEEEe--CCCChhhcc
Confidence 98654321 1 11111 2257888887 677776543
No 229
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.47 E-value=9.8e-08 Score=83.49 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC-------CCCcc-hH---HHHHHHHh----
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GVKPR-DH---ELISLMER---- 201 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~-------~~~~~-~~---~~~~~l~~---- 201 (269)
...+.+|||+|...- ..+.. .....++++++|+|.+. ..... -. .+++.+..
T Consensus 182 ~v~l~iwDtaGQe~~----------r~~~~---~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE----------RRKWI---HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG----------GGGTG---GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh----------hHHHH---HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 356899999997431 11112 22345999999999861 10111 12 23333332
Q ss_pred hCCcEEEEEecCCCCCch-----------------------HHHHHHHHHHHHHHhc---C------CCCCCeEEeeCCC
Q 024325 202 SQTKYQVVLTKTDTVFPI-----------------------DVARRAMQIEESLKAN---N------SLVQPVMMVSSKS 249 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~~-----------------------~~~~~~~~~~~~~~~~---~------~~~~~vi~vSa~~ 249 (269)
.+.|+++|+||+|+.... ..++....+.+.+... . .....++++||++
T Consensus 249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d 328 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALD 328 (354)
T ss_dssp SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTC
T ss_pred CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeec
Confidence 358999999999984210 1222222223222111 0 1123468999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 024325 250 GAGIRSLRTVLSKIAR 265 (269)
Q Consensus 250 g~gi~~L~~~i~~~~~ 265 (269)
++||+++|+++.+.+.
T Consensus 329 ~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 329 QKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 9999999999987664
No 230
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.40 E-value=3.7e-07 Score=80.96 Aligned_cols=116 Identities=10% Similarity=0.041 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC---------CCcch--HHHHHHHHh----
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---------VKPRD--HELISLMER---- 201 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~---------~~~~~--~~~~~~l~~---- 201 (269)
+..+.+|||+|...- ..+... ....++++++|+|.+.- ....+ ..+++.+..
T Consensus 216 ~v~l~iwDtaGQe~~----------r~~w~~---yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRDE----------RRKWIQ---CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGGG----------GGGGGG---GTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhhh----------hhhhHh---hccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 567899999997321 111122 23349999999998751 11111 223333332
Q ss_pred hCCcEEEEEecCCCCCch--------------------------------HHHHHHHHHHHHHHhc------CCCCCCeE
Q 024325 202 SQTKYQVVLTKTDTVFPI--------------------------------DVARRAMQIEESLKAN------NSLVQPVM 243 (269)
Q Consensus 202 ~~~p~iiv~NK~Dl~~~~--------------------------------~~~~~~~~~~~~~~~~------~~~~~~vi 243 (269)
.++|+++|+||+|+.... ........+...+... ......++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 257999999999984211 0122222222221111 00123467
Q ss_pred EeeCCCCCCHHHHHHHHHHhhh
Q 024325 244 MVSSKSGAGIRSLRTVLSKIAR 265 (269)
Q Consensus 244 ~vSa~~g~gi~~L~~~i~~~~~ 265 (269)
++||+++.||+++|+.+.+.+.
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHH
Confidence 8999999999999999887764
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.33 E-value=3.5e-06 Score=72.89 Aligned_cols=146 Identities=19% Similarity=0.236 Sum_probs=76.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCC---Cc-------ee--EeeEEE------------------
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKP---GL-------TQ--TINFFK------------------ 135 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~---gt-------t~--~~~~~~------------------ 135 (269)
..-.++++|++||||||+++.|.+.. .+...+... +. .+ .+.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34589999999999999999988642 111110000 00 00 000100
Q ss_pred --eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecC
Q 024325 136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (269)
Q Consensus 136 --~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~ 213 (269)
.+..+.++||+|...... . .......+.. . -..|-.++++|+..+ ..-...+..+...-....+++||.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~-~-l~~eL~~i~r----a-l~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNR-N-LMDEMKKIAR----V-TKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTT-C-HHHHHHHHHH----H-HCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECG
T ss_pred HhccchhhHHhhccchhHHH-H-HHHHHHHHHH----H-hcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 134578999999754211 1 1111111111 1 126888999997643 122233333333223457889999
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325 214 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256 (269)
Q Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L 256 (269)
|....... ..... .. ...|+.+++ +|+++++|
T Consensus 279 D~~a~~G~--~l~~~----~~---~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 279 DADARGGA--ALSIS----YV---IDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp GGCSCCHH--HHHHH----HH---HTCCEEEEE--CSSSTTCE
T ss_pred CCccchhH--HHHHH----HH---HCCCEEEEe--CCCCcccc
Confidence 97543222 11111 11 157899998 77777654
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.31 E-value=4e-07 Score=77.98 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=57.6
Q ss_pred ccccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 249 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~ 249 (269)
..++|.+++|+|+..+....+ .+++......++|.++|+||+|+.++.+.....+.+.+.+.. .+.+++.+||++
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~---~g~~v~~~sa~~ 160 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN---IGYDVYLTSSKD 160 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH---HTCCEEECCHHH
T ss_pred HHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh---CCCeEEEEecCC
Confidence 456999999999985544443 123333345689999999999999875421112222232222 247899999999
Q ss_pred CCCHHHHHHHH
Q 024325 250 GAGIRSLRTVL 260 (269)
Q Consensus 250 g~gi~~L~~~i 260 (269)
|.|+++|++.+
T Consensus 161 ~~g~~~L~~~~ 171 (307)
T 1t9h_A 161 QDSLADIIPHF 171 (307)
T ss_dssp HTTCTTTGGGG
T ss_pred CCCHHHHHhhc
Confidence 99999887654
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.23 E-value=3e-06 Score=76.12 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..-.|+|+|++++|||||+|.|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4568999999999999999999863
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.17 E-value=4.9e-05 Score=68.85 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..-.++|+|.+|||||||++.|.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4458999999999999999998763
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.15 E-value=8.9e-06 Score=70.98 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=52.9
Q ss_pred ccccceEEEEEeCCCCCCcchHH---HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325 172 RVSLKRVCLLIDTKWGVKPRDHE---LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248 (269)
Q Consensus 172 ~~~~d~vl~vid~~~~~~~~~~~---~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~ 248 (269)
..++|.+++| ++..+. ..... ++-.....++|.++|+||+|+.++..... .+.+...+ ...+++++++||+
T Consensus 128 ~anvD~v~iv-~a~~P~-~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~-~~~~~~~y---~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPE-LSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDF-VNEQMDIY---RNIGYRVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTTT-CCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHH-HHHHHHHH---HTTTCCEEECBTT
T ss_pred HhcCCEEEEE-EeCCCC-CCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHH-HHHHHHHH---HhCCCcEEEEecC
Confidence 3458888866 444332 22222 23333456899999999999997653211 12222222 2346789999999
Q ss_pred CCCCHHHHHHHH
Q 024325 249 SGAGIRSLRTVL 260 (269)
Q Consensus 249 ~g~gi~~L~~~i 260 (269)
+|.|+++|...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999998765
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.15 E-value=7.3e-07 Score=76.35 Aligned_cols=57 Identities=32% Similarity=0.471 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-------CceeEeeEEEeCCcEEEEcCCCCCC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-------gtt~~~~~~~~~~~~~lvDtpG~~~ 150 (269)
.-.++++|++|+|||||+|+|.+.. ...++.+. +||+.......+ ...++||||+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS 236 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence 3589999999999999999999863 22233332 355544433333 357899999865
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.08 E-value=6.9e-05 Score=64.03 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.|+++|++|||||||++.|.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999998853
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.06 E-value=2.4e-05 Score=70.13 Aligned_cols=117 Identities=20% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh-------cCcCccccCCCCCce-----------------------eEe--------e
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALT-------RQWGVVRTSDKPGLT-----------------------QTI--------N 132 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~-------~~~~~~~~s~~~gtt-----------------------~~~--------~ 132 (269)
....|+++|.+|+||||+...|. |. ++..+...+..+ .+. .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 34578999999999999998876 33 333222211100 000 0
Q ss_pred EEE-eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEE
Q 024325 133 FFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVL 210 (269)
Q Consensus 133 ~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~ 210 (269)
... .+..+.++||||..... +... ..+... .....++.+++|+|+..+. ........+.. ..+ .-+|+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~--~~l~---~~L~~~--~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVl 247 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVD--EAMM---DEIKQV--HASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVL 247 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTC--HHHH---HHHHHH--HHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEE
T ss_pred HHHhCCCCEEEEECCCccccc--HHHH---HHHHHH--HHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEE
Confidence 011 25679999999975421 1111 111111 1122378899999987442 22233333332 345 34799
Q ss_pred ecCCCCCc
Q 024325 211 TKTDTVFP 218 (269)
Q Consensus 211 NK~Dl~~~ 218 (269)
||+|....
T Consensus 248 nK~D~~~~ 255 (433)
T 2xxa_A 248 TKVDGDAR 255 (433)
T ss_dssp ECTTSSSC
T ss_pred ecCCCCcc
Confidence 99998644
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.04 E-value=7.3e-05 Score=63.90 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.|+++|++|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 447899999999999999887753
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.00 E-value=0.00023 Score=61.25 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhc
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
.....|+++|++|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999987764
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.97 E-value=1.2e-05 Score=68.62 Aligned_cols=55 Identities=33% Similarity=0.425 Sum_probs=36.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-------ceeEeeEEEeCCcEEEEcCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYG 149 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-------tt~~~~~~~~~~~~~lvDtpG~~ 149 (269)
-.++++|++|||||||+|+|. .. ....+.+.. +|+..........-.++||||+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 478999999999999999999 63 223333322 44443333332345789999985
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.92 E-value=6.4e-06 Score=71.86 Aligned_cols=58 Identities=34% Similarity=0.408 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC---C----ceeEeeEEEeCCcEEEEcCCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---G----LTQTINFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~---g----tt~~~~~~~~~~~~~lvDtpG~~~ 150 (269)
-.++++|++|||||||+|.|++.......+.+. | +|.............++||||+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 379999999999999999999973202222221 2 344444444444457899999743
No 243
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.87 E-value=1.2e-05 Score=68.66 Aligned_cols=57 Identities=35% Similarity=0.442 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-------CceeEeeEEEeCCcEEEEcCCCCCC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-------gtt~~~~~~~~~~~~~lvDtpG~~~ 150 (269)
-.++++|++|||||||+|.|.+... ...+.+. .+|+..........-.++|+||+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 4789999999999999999998632 2222222 2333333332223357899999754
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.84 E-value=0.00034 Score=62.42 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
...|+++|++|+||||++..|.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44788999999999999988764
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.74 E-value=1.6e-05 Score=63.49 Aligned_cols=47 Identities=23% Similarity=0.154 Sum_probs=32.0
Q ss_pred CCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee
Q 024325 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132 (269)
Q Consensus 86 ~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~ 132 (269)
.++......|+|+|++|||||||+++|++..........+.||+...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~ 59 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR 59 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc
Confidence 34444456799999999999999999998642134455566776653
No 246
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.72 E-value=0.00058 Score=57.97 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
.-.++++|++|+||||++..|.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44788999999999999988765
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.58 E-value=0.00017 Score=61.39 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
...|+++|++|+||||++..|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988764
No 248
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.26 E-value=0.00082 Score=60.16 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=20.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHh
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~ 113 (269)
.....|+|+|.+++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345689999999999999999765
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00016 Score=56.62 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999875
No 250
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.18 E-value=0.00019 Score=56.31 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
+++++|++|||||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999863
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.13 E-value=0.00019 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..++|+|++|||||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999875
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.13 E-value=0.00019 Score=56.79 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=25.5
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE
Q 024325 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~ 130 (269)
|+|+|++|||||||++.|+......+.-..+-||+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 789999999999999999876321222334446654
No 253
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.11 E-value=0.0049 Score=48.64 Aligned_cols=65 Identities=9% Similarity=-0.039 Sum_probs=42.7
Q ss_pred CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh-----CCcEEEEEe
Q 024325 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT 211 (269)
Q Consensus 137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-----~~p~iiv~N 211 (269)
.+.+.++|||+.... ....... .+|.+++++.++... ..-..+++.+... +.++.+|+|
T Consensus 75 ~yD~viiD~~~~~~~--------~~~~~l~-------~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV--------ITSAAVM-------VSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSSSH--------HHHHHHH-------HCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred CCCEEEEECCCCCCH--------HHHHHHH-------HCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 467999999986421 0011111 189999999887544 4445666666644 357899999
Q ss_pred cCCCCC
Q 024325 212 KTDTVF 217 (269)
Q Consensus 212 K~Dl~~ 217 (269)
++|...
T Consensus 139 ~~~~~~ 144 (206)
T 4dzz_A 139 RKIEMA 144 (206)
T ss_dssp SBCTTE
T ss_pred ccCCCc
Confidence 999643
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.07 E-value=0.00035 Score=56.03 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
...|+++|++|||||||++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999874
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.06 E-value=0.00022 Score=56.09 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|||||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999976
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.02 E-value=0.0004 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..++++|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 47999999999999999999886
No 257
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.01 E-value=0.00033 Score=56.11 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||++.|.+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999986
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.96 E-value=0.00042 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999886
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.93 E-value=0.00044 Score=56.71 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|++|||||||++.|.|-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 379999999999999999999863
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.93 E-value=0.0005 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...++++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999999886
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.92 E-value=0.0004 Score=56.21 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++|+|++|||||||++.|.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999986
No 262
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.91 E-value=0.00053 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|++..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3479999999999999999999863
No 263
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.87 E-value=0.00052 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.|-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999986
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.81 E-value=0.00065 Score=55.89 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|+.|||||||++.|.|-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.81 E-value=0.00065 Score=55.79 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|++|||||||++.|+|-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999873
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.80 E-value=0.00075 Score=52.69 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.++++|++|+|||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999875
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.80 E-value=0.00065 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999885
No 268
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.79 E-value=0.00066 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||++.+.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCG
T ss_pred EEEEEECCCCCCHHHHHHHHccC
Confidence 36899999999999999986653
No 269
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.79 E-value=0.00066 Score=57.05 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.|-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999986
No 270
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.78 E-value=0.0007 Score=51.99 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.+.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999886
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.78 E-value=0.00069 Score=56.51 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999863
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.77 E-value=0.00069 Score=56.65 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.|-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37999999999999999999986
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.77 E-value=0.0007 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.|-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999986
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.77 E-value=0.0007 Score=55.77 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.|-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999986
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.76 E-value=0.00072 Score=55.86 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|+|-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999863
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.75 E-value=0.0007 Score=54.72 Aligned_cols=22 Identities=23% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|+.|||||||++.|+|-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999986
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.75 E-value=0.00075 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|+|-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999873
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.73 E-value=0.00079 Score=55.35 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|+.|||||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.72 E-value=0.00077 Score=56.19 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||++.|.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 37999999999999999999875
No 280
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.72 E-value=0.00067 Score=54.55 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|+.|||||||++.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999885
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.71 E-value=0.00081 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|.|-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 379999999999999999999863
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.71 E-value=0.00099 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|++||||||+++.|.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999876
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.70 E-value=0.00084 Score=55.80 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|+|-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999986
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.70 E-value=0.00095 Score=53.02 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|++|||||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.70 E-value=0.00087 Score=55.45 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|+.|||||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999995
No 286
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.70 E-value=0.00085 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.|-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37999999999999999999986
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.70 E-value=0.00085 Score=55.51 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|+.|||||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999873
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.68 E-value=0.00088 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999876
No 289
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.68 E-value=0.00092 Score=55.90 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|+|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999995
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.67 E-value=0.0009 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|+|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999863
No 291
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.65 E-value=0.00096 Score=56.16 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|+|-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 369999999999999999999863
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.64 E-value=0.0012 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|++||||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.64 E-value=0.0011 Score=56.51 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.++|+|++|+|||||++.|.+-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 347999999999999999999864
No 294
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.63 E-value=0.00099 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|+.|||||||++.|.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999873
No 295
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.63 E-value=0.001 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.|-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999986
No 296
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0089 Score=53.41 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-|++.|+||+|||+|..++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999987
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.59 E-value=0.0011 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|||||||++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5899999999999999999863
No 298
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.57 E-value=0.00055 Score=53.31 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..++|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999986
No 299
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.56 E-value=0.0011 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|++|||||||.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999875
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.55 E-value=0.001 Score=54.06 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHh-cC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALT-RQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~-~~ 115 (269)
...++++|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3479999999999999999999 75
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.53 E-value=0.0016 Score=53.54 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 024325 93 PEIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~ 113 (269)
..|+++|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999
No 302
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.52 E-value=0.0008 Score=57.40 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|++-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3479999999999999999999863
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.0011 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999886
No 304
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.51 E-value=0.0013 Score=54.77 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|.|-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999986
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.50 E-value=0.0015 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|++|||||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999876
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.50 E-value=0.0015 Score=50.06 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCChHHHHHHH
Q 024325 93 PEIAFAGRSNVGKSSMLNAL 112 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l 112 (269)
+.|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.49 E-value=0.0015 Score=55.96 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.....|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34568999999999999999999885
No 308
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.44 E-value=0.0011 Score=56.77 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.++++|+.|||||||+|.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 578999999999999999999965
No 309
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.44 E-value=0.013 Score=48.23 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+++|+|||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999875
No 310
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.44 E-value=0.0016 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 311
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.43 E-value=0.0015 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|+.|||||||++.|.|-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3479999999999999999999873
No 312
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.41 E-value=0.0017 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|++.|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
No 313
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.41 E-value=0.01 Score=47.41 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCC-CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh-CCcEEEEEecCC
Q 024325 137 GTKLCLVDLPGY-GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD 214 (269)
Q Consensus 137 ~~~~~lvDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-~~p~iiv~NK~D 214 (269)
.+.+.++|||+. ..... . ..+ ..+|.+++++.++...-.....+++.+... +.++.+|+|++|
T Consensus 67 ~yD~viiD~p~~~~~~~~--------~----~~l---~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~ 131 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDEDL--------E----ALA---DGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP 131 (209)
T ss_dssp GCSEEEEEEECCCSSSHH--------H----HHH---HTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred cCCEEEEeCCCCcCcHHH--------H----HHH---HHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence 467999999986 43210 1 111 128999999987531111223555666653 678889999999
Q ss_pred CCC
Q 024325 215 TVF 217 (269)
Q Consensus 215 l~~ 217 (269)
...
T Consensus 132 ~~~ 134 (209)
T 3cwq_A 132 PYP 134 (209)
T ss_dssp CTT
T ss_pred Ccc
Confidence 764
No 314
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.40 E-value=0.0015 Score=56.86 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|+++|++|||||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999875
No 315
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.37 E-value=0.0018 Score=56.52 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|++|||||||++.|.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 479999999999999999999863
No 316
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.37 E-value=0.0019 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|+.|||||||++.|.+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998874
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.36 E-value=0.0017 Score=52.23 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||++.|++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
No 318
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.36 E-value=0.0018 Score=56.39 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|++|||||||++.|.|-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 368999999999999999999863
No 319
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.36 E-value=0.0016 Score=56.14 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|||||||++.|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 320
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.35 E-value=0.0016 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...++++|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999876
No 321
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.34 E-value=0.0022 Score=49.73 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.++++|++|+|||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998864
No 322
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.34 E-value=0.0019 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999986
No 323
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.34 E-value=0.0017 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|++|||||||+++|++..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 69999999999999999999863
No 324
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.32 E-value=0.0023 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|++||||||+.+.|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999865
No 325
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.31 E-value=0.0021 Score=55.98 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|++|||||||++.|.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999863
No 326
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.31 E-value=0.0022 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+++|.+||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999765
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.30 E-value=0.0057 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|++||||||+.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999764
No 328
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.022 Score=52.06 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...++|.|++|+||||++.++...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 329
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.29 E-value=0.0022 Score=57.96 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+|+||||+.+.|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.28 E-value=0.0022 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~ 114 (269)
..|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 331
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.017 Score=51.02 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-|.+.|+||+|||+|..++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 4899999999999999999987
No 332
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.27 E-value=0.0022 Score=55.86 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||++.|.|-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 36899999999999999999986
No 333
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.26 E-value=0.0023 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|++|||||||++.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68999999999999999999863
No 334
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.26 E-value=0.0023 Score=52.17 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 024325 94 EIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~ 114 (269)
.++++|++|||||||++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999999884
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.26 E-value=0.0027 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+||||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999886
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.0023 Score=55.83 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|++|||||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999999863
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0024 Score=50.72 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~ 114 (269)
..|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 338
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.24 E-value=0.0034 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+.|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998765
No 339
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.22 E-value=0.0024 Score=55.92 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|++|||||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68999999999999999999863
No 340
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.22 E-value=0.0022 Score=56.22 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999875
No 341
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.20 E-value=0.0032 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHh
Q 024325 92 LPEIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~ 113 (269)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 342
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.20 E-value=0.0025 Score=55.78 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|++|||||||++.|.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999999863
No 343
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0047 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..-.++++|++|||||||++.|.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998864
No 344
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.037 Score=47.26 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+.+.+.|+||+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998875
No 345
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.17 E-value=0.0034 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+++|.+|||||||++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998864
No 346
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.15 E-value=0.003 Score=48.69 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 024325 94 EIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~ 114 (269)
.|++.|.|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999987
No 347
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.14 E-value=0.003 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999875
No 348
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.14 E-value=0.0021 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999864
No 349
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.13 E-value=0.0026 Score=56.62 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++|+|++|||||||+++|++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999875
No 350
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.11 E-value=0.0038 Score=48.18 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 351
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.11 E-value=0.0031 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999875
No 352
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.10 E-value=0.031 Score=49.57 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+++|.+||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999875
No 353
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.10 E-value=0.0027 Score=58.05 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|||||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999985
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.08 E-value=0.0037 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.....|+++|++|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999999998764
No 355
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.07 E-value=0.0043 Score=48.43 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+++|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998765
No 356
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.06 E-value=0.0031 Score=55.55 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||++.|.|-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 37999999999999999999986
No 357
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.04 E-value=0.0021 Score=55.74 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|++|||||||++.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 69999999999999999999863
No 358
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.04 E-value=0.0039 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+|+|++|||||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998765
No 359
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.03 E-value=0.004 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+++|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 360
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.03 E-value=0.004 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+|.|..|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999875
No 361
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.03 E-value=0.0041 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.|+++|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 362
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.02 E-value=0.0041 Score=48.44 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|.+||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 363
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0031 Score=56.88 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....++++|+.|||||||++.|+|-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3568999999999999999999885
No 364
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.01 E-value=0.0035 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|++.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 365
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.96 E-value=0.01 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=16.9
Q ss_pred CcEEEEEcCCCCChHHHHHHH
Q 024325 92 LPEIAFAGRSNVGKSSMLNAL 112 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l 112 (269)
...|+|+|..|+||||+.-.|
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nL 61 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNL 61 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHH
Confidence 457888899999999987543
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.94 E-value=0.005 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|.+||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 367
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.94 E-value=0.0062 Score=48.11 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 90 ~~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.....|++.|.+||||||+.+.|...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999864
No 368
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.93 E-value=0.07 Score=43.53 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|+||+|||+|..++.+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999875
No 369
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.03 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-|.+.|+||+|||+|..++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 35999999999999999999987
No 370
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.92 E-value=0.0036 Score=52.45 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 024325 95 IAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~ 115 (269)
++++|++|+|||||++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999986
No 371
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0069 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..-.++++|++|||||||++.|.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3447999999999999999998863
No 372
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.91 E-value=0.0021 Score=55.99 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|||||||++.|.|-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999999986
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.89 E-value=0.0055 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 374
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.86 E-value=0.0056 Score=47.91 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 375
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.86 E-value=0.0049 Score=47.76 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.|+++|.+||||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 376
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.83 E-value=0.0042 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999986
No 377
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.82 E-value=0.0051 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 378
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.82 E-value=0.007 Score=47.80 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+||||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998764
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.81 E-value=0.0045 Score=49.53 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 380
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.80 E-value=0.018 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+++.|+||+|||+|..++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35777799999999999999876
No 381
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.80 E-value=0.0052 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 024325 94 EIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~ 114 (269)
..+|+|+.|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 382
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.80 E-value=0.0056 Score=48.48 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.79 E-value=0.0055 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+|+++|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998654
No 384
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.77 E-value=0.0073 Score=46.98 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|.+||||||+.+.|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 385
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.77 E-value=0.0058 Score=48.11 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999865
No 386
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.76 E-value=0.014 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
+.|+|+|++|||||||...|....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 468999999999999999998763
No 387
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.76 E-value=0.08 Score=43.71 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...+.+.|+||+|||+|..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999875
No 388
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.73 E-value=0.0048 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+.|+++|++||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999865
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.72 E-value=0.007 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 390
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.71 E-value=0.0069 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998764
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.69 E-value=0.0063 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+||||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999875
No 392
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.68 E-value=0.0055 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|+.|||||||++.|.|..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999863
No 393
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.68 E-value=0.0065 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+|.|.+||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 394
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.012 Score=52.43 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-|++.|+||+|||+|..++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999986
No 395
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.67 E-value=0.019 Score=49.49 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQWG 117 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~~ 117 (269)
+.|+|+|++|+|||||...|.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 5799999999999999999987643
No 396
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.66 E-value=0.011 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
+.|+|+|++|||||||...|....
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 568999999999999999998653
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.65 E-value=0.0064 Score=48.87 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+|+|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 398
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.65 E-value=0.024 Score=47.45 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...+++.|+||+|||+|.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.64 E-value=0.006 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+.|+++|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.62 E-value=0.0063 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|+|||||++.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998854
No 401
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.0069 Score=47.20 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|.+||||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988754
No 402
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.62 E-value=0.0051 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.|+++|+|||||+|....|...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998764
No 403
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.61 E-value=0.0066 Score=52.25 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999876
No 404
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.61 E-value=0.0058 Score=55.28 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|||||||++.|.+-
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998863
No 405
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.60 E-value=0.006 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|.|..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999999863
No 406
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.59 E-value=0.021 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...+++.|+||+|||+|.+++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999876
No 407
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.59 E-value=0.0064 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
..|+++|+|||||+|....|...+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999998764
No 408
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.57 E-value=0.12 Score=44.60 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 024325 94 EIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~ 114 (269)
.+++.|+||+|||||...+..
T Consensus 48 LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999876654
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.57 E-value=0.0074 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.|++.|.+||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.56 E-value=0.0029 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 411
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.55 E-value=0.0078 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|.+||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 412
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.54 E-value=0.0061 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-++++|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999886
No 413
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.012 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-|.+.|+||+|||+|..++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999987
No 414
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.032 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-|++.|+||+|||+|..++.+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 46999999999999999999986
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.51 E-value=0.0081 Score=48.08 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~ 114 (269)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 416
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.51 E-value=0.0077 Score=55.92 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|.|-.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3479999999999999999999863
No 417
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.49 E-value=0.016 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+.|+|+|++|+|||||...|...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 46899999999999999998765
No 418
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.48 E-value=0.0085 Score=45.68 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.48 E-value=0.0072 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+++|++||||||+.+.|.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999874
No 420
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0074 Score=56.28 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|+.|||||||++.|.|..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3479999999999999999999863
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.45 E-value=0.0085 Score=47.89 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 422
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.44 E-value=0.0073 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.++++|++|+|||||++.+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6999999999999999998875
No 423
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.44 E-value=0.0074 Score=49.83 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|+++|++|||||||.+.|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999998764
No 424
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.43 E-value=0.0086 Score=55.63 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|.|-.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999863
No 425
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.43 E-value=0.0094 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|++||||||+.+.|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
No 426
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.42 E-value=0.0097 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+++.|++|+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998875
No 427
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.42 E-value=0.0092 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 428
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.42 E-value=0.0082 Score=46.98 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998765
No 429
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.41 E-value=0.0075 Score=56.16 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|.|-.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3479999999999999999999864
No 430
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.41 E-value=0.0086 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998764
No 431
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.39 E-value=0.0077 Score=52.60 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~ 113 (269)
..+|+|++|||||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999977
No 432
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.38 E-value=0.0082 Score=55.93 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|.|-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4489999999999999999999864
No 433
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.35 E-value=0.0082 Score=56.01 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|+.|||||||++.|.|..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3479999999999999999999863
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.35 E-value=0.008 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-+++++|++|+|||||++.|.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999986
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.35 E-value=0.0093 Score=45.05 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 024325 94 EIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~ 113 (269)
..+|+|+.|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999975
No 436
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.33 E-value=0.0072 Score=56.08 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|.|-.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3479999999999999999999864
No 437
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.32 E-value=0.008 Score=46.49 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=16.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998754
No 438
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.31 E-value=0.01 Score=47.31 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+||||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998765
No 439
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.31 E-value=0.019 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|++|+|||||.+++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.29 E-value=0.012 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
+.|+++|++|||||||...|....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999988753
No 441
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.29 E-value=0.0087 Score=47.99 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 442
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.26 E-value=0.011 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+|.|.+||||||+.+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 443
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.26 E-value=0.0093 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|+|.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999986
No 444
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.22 E-value=0.33 Score=40.96 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.+.|++|+|||+++.++...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 4566677999999999999876
No 445
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.21 E-value=0.012 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|+|||||++.|.+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999875
No 446
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.20 E-value=0.012 Score=48.10 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|++||||||+.+.|...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998743
No 447
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.18 E-value=0.0094 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|.+-.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3479999999999999999999864
No 448
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.16 E-value=0.011 Score=54.49 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|||||||++.|+|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999973
No 449
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.14 E-value=0.012 Score=47.38 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 450
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.14 E-value=0.013 Score=47.68 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|.+||||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999876
No 451
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.13 E-value=0.015 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+|+|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 452
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.12 E-value=0.011 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|+|||||+..+++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999874
No 453
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.10 E-value=0.014 Score=46.35 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~ 114 (269)
-.++++|++|+|||||+..+++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999876
No 454
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.08 E-value=0.1 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+.+.|.|+||+|||||.+.+.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999999999876
No 455
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.08 E-value=0.014 Score=46.94 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...+++.|++|+|||+|+.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 456
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.06 E-value=0.011 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.++++|++|||||||++.|.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999986
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.03 E-value=0.012 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCc
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
-.++++|+.|+|||||++.|.|..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999963
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.02 E-value=0.014 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+.|+|.|.+||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999998764
No 459
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.96 E-value=0.015 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+++.|++|+|||+|+.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998875
No 460
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.95 E-value=0.016 Score=44.22 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.-.|++.|.+||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.015 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.+++.|++|+|||||++.+.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998873
No 462
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.86 E-value=0.013 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+++.|++|+|||+|+..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998765
No 463
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.015 Score=54.29 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.++++|+.|||||||++.|.|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999873
No 464
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.82 E-value=0.017 Score=48.37 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~ 114 (269)
...|+|+|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999873
No 465
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.80 E-value=0.019 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....|+++|.+||||||+.+.|.+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998763
No 466
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.77 E-value=0.013 Score=59.67 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-+|+++|++|||||||++.|++-+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 3489999999999999999999864
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.72 E-value=0.014 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+++.|+||+||||+..+|.+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999998887654
No 468
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.71 E-value=0.0023 Score=52.09 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 024325 95 IAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 95 v~ivG~~~~GKSsLin~l~~~ 115 (269)
++|+|++|||||||+++|++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578899999999999999875
No 469
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.70 E-value=0.055 Score=47.36 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+|.|++|+|||+|..++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999765
No 470
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.68 E-value=0.019 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998764
No 471
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.67 E-value=0.024 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|+||+|||+|..++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999876
No 472
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.66 E-value=0.14 Score=43.67 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 024325 94 EIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~ 114 (269)
.+.+.|+||+|||+|...+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988875
No 473
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.019 Score=49.38 Aligned_cols=24 Identities=42% Similarity=0.720 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.|.+++.|++|+||||+++++.+.
T Consensus 46 ~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 46 LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998875
No 474
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.61 E-value=0.045 Score=44.24 Aligned_cols=41 Identities=10% Similarity=-0.082 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (269)
Q Consensus 177 ~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~ 217 (269)
.-++++|-..-+.....+.+..+...++|++++.-..|-..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 44677887655544444566666666899999998888653
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.58 E-value=0.018 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|++|+|||||+..+++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999988763
No 476
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.57 E-value=0.019 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
+.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 477
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.57 E-value=0.022 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 024325 94 EIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+++.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998764
No 478
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.55 E-value=0.15 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..-|++.|+||+|||+|.+++.+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999987
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.46 E-value=0.025 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|+|+|++|+|||||...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999876
No 480
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.46 E-value=0.08 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..++++|+||+|||+|+..+.+.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999875
No 481
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.46 E-value=0.064 Score=46.44 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|++.|++|+|||+|.+++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 482
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.40 E-value=0.027 Score=47.37 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
....+++.|+||+|||+|..++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999887764
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.38 E-value=0.023 Score=45.22 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 024325 93 PEIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~ 113 (269)
...+|+|+.|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 367899999999999999864
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.38 E-value=0.04 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..++++|+||+|||++.+.|...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998765
No 485
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.34 E-value=0.024 Score=47.65 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 024325 94 EIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~ 114 (269)
.|+++|.|||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 486
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.33 E-value=0.03 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 91 ~~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+.|+++|++|+||||+...|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999887764
No 487
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.33 E-value=0.049 Score=40.55 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|.+.|++|+|||++..++...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999875
No 488
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.31 E-value=0.018 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=17.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
.+.|+|.|.+||||||+.+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 489
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.22 E-value=0.052 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+++.|++|+|||++.+++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998764
No 490
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.19 E-value=0.025 Score=57.48 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~~ 116 (269)
.-.++++|++|||||||++.|++.+
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CcEEEEEecCCCcHHHHHHHhcccc
Confidence 3479999999999999999999874
No 491
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.17 E-value=0.027 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+.+.|++|+|||||++++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999875
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.16 E-value=0.014 Score=57.15 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
-.++++|+.|||||||++.|+|.
T Consensus 700 eivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999986
No 493
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.13 E-value=0.029 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+++.|++|+|||||+..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.08 E-value=0.016 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+++|.+|||||||++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 457999999999999999999886
No 495
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.05 E-value=0.2 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...++++|+||+|||+++..+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999998875
No 496
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.05 E-value=0.0095 Score=52.63 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 024325 94 EIAFAGRSNVGKSSMLNALTR 114 (269)
Q Consensus 94 ~v~ivG~~~~GKSsLin~l~~ 114 (269)
.++|+|++|||||||+++|..
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998743
No 497
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.04 E-value=0.034 Score=46.92 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..|++.|+||+|||+|.+++.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999876
No 498
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.02 E-value=0.02 Score=54.05 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 024325 93 PEIAFAGRSNVGKSSMLNALT 113 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~ 113 (269)
-.++|+|++|||||||++.++
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 368999999999999998754
No 499
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.02 E-value=0.024 Score=46.76 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q 024325 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 92 ~~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
...|+|.|.+||||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999876
No 500
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.99 E-value=0.03 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q 024325 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (269)
Q Consensus 93 ~~v~ivG~~~~GKSsLin~l~~~ 115 (269)
..+++.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998875
Done!