Query 024326
Match_columns 269
No_of_seqs 261 out of 1217
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 1.8E-13 3.9E-18 96.5 6.7 53 74-126 4-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 1.9E-13 4E-18 95.4 6.0 49 75-123 2-55 (55)
3 smart00353 HLH helix loop heli 99.4 5.9E-13 1.3E-17 91.8 6.1 49 79-127 1-52 (53)
4 KOG1318 Helix loop helix trans 99.2 6.5E-11 1.4E-15 112.5 7.4 59 71-129 230-292 (411)
5 KOG1319 bHLHZip transcription 99.1 6.7E-11 1.4E-15 100.7 6.2 90 37-133 32-128 (229)
6 cd04897 ACT_ACR_3 ACT domain-c 99.1 1E-09 2.3E-14 81.5 9.8 71 159-233 3-73 (75)
7 cd04896 ACT_ACR-like_3 ACT dom 99.0 4.6E-09 1E-13 78.1 9.7 69 160-233 3-73 (75)
8 cd04895 ACT_ACR_1 ACT domain-c 98.9 7.3E-09 1.6E-13 76.4 9.2 62 159-220 3-64 (72)
9 cd04927 ACT_ACR-like_2 Second 98.8 4.7E-08 1E-12 72.6 10.2 69 159-232 2-71 (76)
10 cd04900 ACT_UUR-like_1 ACT dom 98.8 4.3E-08 9.3E-13 71.9 9.9 48 158-205 2-50 (73)
11 cd04925 ACT_ACR_2 ACT domain-c 98.6 5.5E-07 1.2E-11 66.4 10.3 46 160-205 3-48 (74)
12 KOG4304 Transcriptional repres 98.6 4.6E-08 1E-12 88.3 5.0 55 74-128 32-94 (250)
13 KOG3561 Aryl-hydrocarbon recep 98.4 2.1E-07 4.6E-12 95.2 5.5 51 75-125 21-75 (803)
14 cd04928 ACT_TyrKc Uncharacteri 98.4 4.4E-06 9.5E-11 61.0 9.2 48 159-206 3-51 (68)
15 cd04926 ACT_ACR_4 C-terminal 98.2 1.2E-05 2.7E-10 58.8 9.3 48 158-205 2-49 (72)
16 cd04899 ACT_ACR-UUR-like_2 C-t 98.2 1.6E-05 3.5E-10 56.9 9.6 68 159-231 2-69 (70)
17 KOG0561 bHLH transcription fac 98.2 2.3E-06 5E-11 78.1 4.9 57 73-129 59-117 (373)
18 KOG2483 Upstream transcription 98.1 8.9E-06 1.9E-10 72.7 6.7 60 70-129 55-117 (232)
19 PRK05007 PII uridylyl-transfer 98.0 2.6E-05 5.6E-10 82.0 10.6 72 156-232 807-878 (884)
20 KOG2588 Predicted DNA-binding 98.0 2.3E-06 4.9E-11 88.2 2.2 58 73-130 275-333 (953)
21 PRK00275 glnD PII uridylyl-tra 98.0 3.4E-05 7.3E-10 81.3 10.5 77 157-233 814-890 (895)
22 PRK01759 glnD PII uridylyl-tra 97.9 6E-05 1.3E-09 79.0 10.2 71 156-231 782-852 (854)
23 cd04873 ACT_UUR-ACR-like ACT d 97.9 0.00023 5E-09 50.4 9.7 47 159-205 2-48 (70)
24 KOG3960 Myogenic helix-loop-he 97.8 8.2E-05 1.8E-09 66.6 7.7 62 71-132 115-178 (284)
25 PRK04374 PII uridylyl-transfer 97.8 0.00012 2.6E-09 76.8 9.7 71 157-232 796-866 (869)
26 PLN03217 transcription factor 97.7 6.7E-05 1.5E-09 56.5 5.5 47 87-133 20-72 (93)
27 KOG4029 Transcription factor H 97.6 6.5E-05 1.4E-09 67.0 4.5 61 72-132 107-171 (228)
28 PRK03059 PII uridylyl-transfer 97.6 0.00035 7.7E-09 73.4 10.3 48 157-204 786-833 (856)
29 PRK05092 PII uridylyl-transfer 97.6 0.00046 9.9E-09 73.2 10.7 74 157-234 843-916 (931)
30 TIGR01693 UTase_glnD [Protein- 97.5 0.00074 1.6E-08 70.9 10.7 74 157-234 668-742 (850)
31 PRK05007 PII uridylyl-transfer 97.4 0.0012 2.6E-08 69.6 11.8 74 157-235 701-775 (884)
32 PRK01759 glnD PII uridylyl-tra 97.4 0.001 2.2E-08 69.9 10.6 72 158-234 678-750 (854)
33 TIGR01693 UTase_glnD [Protein- 97.4 0.00099 2.1E-08 70.0 10.4 70 157-231 779-848 (850)
34 PRK03381 PII uridylyl-transfer 97.4 0.00076 1.6E-08 70.2 9.4 65 158-228 708-772 (774)
35 PF13740 ACT_6: ACT domain; PD 97.4 0.0035 7.6E-08 46.1 10.3 66 158-234 3-68 (76)
36 PF01842 ACT: ACT domain; Int 97.4 0.0026 5.7E-08 44.3 9.2 37 159-195 2-38 (66)
37 COG2844 GlnD UTP:GlnB (protein 97.3 0.00085 1.8E-08 69.0 8.6 53 158-210 792-844 (867)
38 PRK00275 glnD PII uridylyl-tra 97.3 0.0017 3.8E-08 68.5 10.5 51 158-208 705-756 (895)
39 PRK03059 PII uridylyl-transfer 97.1 0.0027 5.9E-08 66.8 10.2 72 158-234 679-751 (856)
40 cd04893 ACT_GcvR_1 ACT domains 97.1 0.0079 1.7E-07 44.4 9.9 66 158-234 2-67 (77)
41 PRK03381 PII uridylyl-transfer 97.0 0.0037 8E-08 65.1 10.0 48 158-205 600-647 (774)
42 PRK05092 PII uridylyl-transfer 97.0 0.0043 9.4E-08 65.8 10.6 71 158-232 733-804 (931)
43 PF13291 ACT_4: ACT domain; PD 96.7 0.018 3.9E-07 42.3 9.0 51 155-205 4-56 (80)
44 PRK04374 PII uridylyl-transfer 96.6 0.013 2.7E-07 61.9 10.6 70 158-234 691-761 (869)
45 cd04872 ACT_1ZPV ACT domain pr 96.2 0.04 8.7E-07 41.4 8.2 46 159-204 3-48 (88)
46 PRK00194 hypothetical protein; 96.1 0.047 1E-06 41.0 8.4 46 158-203 4-49 (90)
47 cd04869 ACT_GcvR_2 ACT domains 96.1 0.093 2E-06 38.3 9.6 35 160-194 2-36 (81)
48 cd04870 ACT_PSP_1 CT domains f 96.1 0.076 1.6E-06 38.7 9.0 45 160-204 2-46 (75)
49 KOG3910 Helix loop helix trans 96.0 0.0069 1.5E-07 59.1 4.0 59 70-128 522-584 (632)
50 cd04875 ACT_F4HF-DF N-terminal 96.0 0.1 2.2E-06 37.8 9.3 33 160-192 2-34 (74)
51 cd04886 ACT_ThrD-II-like C-ter 95.7 0.15 3.1E-06 35.5 8.9 33 161-193 2-34 (73)
52 cd04887 ACT_MalLac-Enz ACT_Mal 95.5 0.21 4.6E-06 35.7 9.3 45 160-204 2-47 (74)
53 cd04888 ACT_PheB-BS C-terminal 95.4 0.13 2.9E-06 36.8 8.2 47 158-204 1-48 (76)
54 COG2844 GlnD UTP:GlnB (protein 95.3 0.072 1.6E-06 55.3 8.6 71 159-234 686-757 (867)
55 TIGR00655 PurU formyltetrahydr 94.8 0.33 7.1E-06 44.8 10.7 89 160-261 3-94 (280)
56 cd04894 ACT_ACR-like_1 ACT dom 94.8 0.19 4.1E-06 36.1 7.0 45 160-204 3-47 (69)
57 PRK06027 purU formyltetrahydro 94.5 0.55 1.2E-05 43.4 11.5 92 157-261 6-99 (286)
58 KOG4447 Transcription factor T 94.4 0.03 6.5E-07 46.9 2.5 54 74-127 78-133 (173)
59 PRK13010 purU formyltetrahydro 94.2 0.46 9.9E-06 44.0 10.1 92 158-261 10-103 (289)
60 cd04877 ACT_TyrR N-terminal AC 94.0 0.43 9.2E-06 34.5 7.8 36 160-196 3-38 (74)
61 cd04876 ACT_RelA-SpoT ACT dom 93.4 0.99 2.1E-05 30.0 8.5 43 161-203 2-45 (71)
62 PRK13011 formyltetrahydrofolat 93.4 1.1 2.3E-05 41.5 11.0 92 158-261 8-99 (286)
63 cd04881 ACT_HSDH-Hom ACT_HSDH_ 93.0 0.91 2E-05 31.9 8.1 34 160-193 3-36 (79)
64 KOG3898 Transcription factor N 92.8 0.11 2.3E-06 47.3 3.6 53 73-125 71-126 (254)
65 cd04880 ACT_AAAH-PDT-like ACT 92.8 1.6 3.4E-05 31.4 9.2 45 162-206 4-49 (75)
66 cd04874 ACT_Af1403 N-terminal 92.7 0.7 1.5E-05 32.0 7.0 35 159-193 2-36 (72)
67 cd02116 ACT ACT domains are co 92.6 0.97 2.1E-05 28.4 7.2 34 161-194 2-35 (60)
68 PRK04435 hypothetical protein; 92.5 1.2 2.6E-05 37.1 9.2 50 156-205 68-118 (147)
69 cd04879 ACT_3PGDH-like ACT_3PG 92.2 0.62 1.4E-05 31.9 6.1 44 160-203 2-47 (71)
70 cd04889 ACT_PDH-BS-like C-term 92.1 0.78 1.7E-05 31.0 6.3 43 161-203 2-45 (56)
71 COG0788 PurU Formyltetrahydrof 91.7 1.2 2.7E-05 40.7 8.9 90 159-259 9-98 (287)
72 KOG3560 Aryl-hydrocarbon recep 91.6 0.15 3.2E-06 50.7 3.0 41 80-120 31-75 (712)
73 PRK11589 gcvR glycine cleavage 91.3 0.86 1.9E-05 39.7 7.3 48 156-203 7-54 (190)
74 PRK07334 threonine dehydratase 91.3 1.6 3.4E-05 42.1 9.8 49 156-204 325-378 (403)
75 KOG3559 Transcriptional regula 91.1 0.23 5E-06 47.9 3.7 41 81-121 8-52 (598)
76 cd04905 ACT_CM-PDT C-terminal 91.1 3.7 8.1E-05 29.9 9.6 45 162-206 6-51 (80)
77 cd04878 ACT_AHAS N-terminal AC 90.8 3 6.6E-05 28.5 8.6 45 160-204 3-49 (72)
78 KOG4395 Transcription factor A 90.8 0.42 9.2E-06 43.2 4.9 54 74-127 174-230 (285)
79 cd04909 ACT_PDH-BS C-terminal 90.0 4.3 9.4E-05 28.3 8.9 34 160-193 4-37 (69)
80 KOG3558 Hypoxia-inducible fact 89.6 0.34 7.4E-06 49.4 3.7 42 79-120 51-96 (768)
81 cd04908 ACT_Bt0572_1 N-termina 89.4 2.1 4.5E-05 30.1 6.7 44 159-204 3-46 (66)
82 cd04903 ACT_LSD C-terminal ACT 89.1 2.1 4.6E-05 29.3 6.6 32 161-192 3-34 (71)
83 cd04884 ACT_CBS C-terminal ACT 89.0 3.3 7.1E-05 29.5 7.6 34 160-193 2-35 (72)
84 cd04883 ACT_AcuB C-terminal AC 88.9 6 0.00013 27.7 9.0 45 159-203 3-49 (72)
85 PRK08577 hypothetical protein; 88.8 4.9 0.00011 32.7 9.5 38 157-194 56-93 (136)
86 cd04882 ACT_Bt0572_2 C-termina 86.5 2.6 5.6E-05 28.8 5.7 33 161-193 3-35 (65)
87 TIGR00119 acolac_sm acetolacta 84.5 6.9 0.00015 33.0 8.3 44 160-203 4-49 (157)
88 cd04931 ACT_PAH ACT domain of 84.1 12 0.00026 28.6 8.7 44 162-205 19-63 (90)
89 cd04904 ACT_AAAH ACT domain of 83.5 9.6 0.00021 27.5 7.7 45 162-206 5-50 (74)
90 PRK10872 relA (p)ppGpp synthet 83.5 7.9 0.00017 40.5 9.8 50 155-204 664-715 (743)
91 PRK11895 ilvH acetolactate syn 83.2 8.9 0.00019 32.5 8.4 44 160-203 5-50 (161)
92 cd04929 ACT_TPH ACT domain of 82.9 15 0.00033 26.8 8.6 43 163-205 6-49 (74)
93 COG3830 ACT domain-containing 82.8 3 6.4E-05 32.1 4.8 47 158-204 4-50 (90)
94 cd04885 ACT_ThrD-I Tandem C-te 82.0 13 0.00028 26.2 7.8 31 162-193 3-33 (68)
95 cd04901 ACT_3PGDH C-terminal A 81.8 1.3 2.7E-05 30.9 2.4 43 161-203 3-45 (69)
96 cd04902 ACT_3PGDH-xct C-termin 80.7 6 0.00013 27.6 5.7 42 162-203 4-47 (73)
97 PRK11092 bifunctional (p)ppGpp 80.6 11 0.00024 39.2 9.7 50 155-204 624-674 (702)
98 CHL00100 ilvH acetohydroxyacid 80.1 14 0.0003 31.8 8.6 33 160-192 5-37 (174)
99 COG4492 PheB ACT domain-contai 79.2 15 0.00032 30.5 8.0 49 156-204 71-120 (150)
100 TIGR00691 spoT_relA (p)ppGpp s 79.0 13 0.00029 38.5 9.6 50 155-204 608-658 (683)
101 cd04918 ACT_AK1-AT_2 ACT domai 78.2 19 0.00041 25.1 7.6 52 166-228 12-63 (65)
102 cd04922 ACT_AKi-HSDH-ThrA_2 AC 77.5 20 0.00042 24.4 7.7 52 166-228 13-64 (66)
103 PRK11589 gcvR glycine cleavage 77.1 35 0.00077 29.6 10.4 37 158-194 96-132 (190)
104 PF13710 ACT_5: ACT domain; PD 76.5 11 0.00024 26.6 5.9 38 166-203 1-40 (63)
105 PRK06737 acetolactate synthase 75.2 17 0.00037 26.9 6.8 34 160-193 5-38 (76)
106 cd04915 ACT_AK-Ectoine_2 ACT d 75.0 21 0.00045 25.1 7.1 51 167-228 14-64 (66)
107 PRK00227 glnD PII uridylyl-tra 74.6 17 0.00036 37.9 8.9 44 162-206 552-595 (693)
108 PRK00227 glnD PII uridylyl-tra 74.6 4.2 9E-05 42.2 4.5 42 159-204 633-674 (693)
109 cd04937 ACT_AKi-DapG-BS_2 ACT 74.3 26 0.00056 24.2 8.6 21 166-186 13-33 (64)
110 PRK13562 acetolactate synthase 73.2 18 0.00039 27.5 6.5 36 160-195 5-40 (84)
111 PRK11152 ilvM acetolactate syn 70.0 27 0.00058 25.9 6.8 35 159-193 5-39 (76)
112 PF05088 Bac_GDH: Bacterial NA 69.2 83 0.0018 35.9 13.2 78 157-238 489-571 (1528)
113 PRK11899 prephenate dehydratas 68.2 42 0.00092 30.9 9.2 46 162-207 199-245 (279)
114 cd04930 ACT_TH ACT domain of t 68.0 47 0.001 26.5 8.3 44 162-205 46-90 (115)
115 cd04919 ACT_AK-Hom3_2 ACT doma 67.3 37 0.00079 23.1 7.8 29 166-194 13-41 (66)
116 PRK06382 threonine dehydratase 67.1 38 0.00082 32.6 9.1 36 156-191 329-364 (406)
117 COG0317 SpoT Guanosine polypho 65.8 36 0.00079 35.4 9.0 47 155-201 625-671 (701)
118 cd04898 ACT_ACR-like_4 ACT dom 62.0 18 0.00038 27.0 4.4 37 161-197 4-42 (77)
119 TIGR01127 ilvA_1Cterm threonin 61.8 66 0.0014 30.4 9.6 36 156-191 304-339 (380)
120 KOG3582 Mlx interactors and re 61.5 1.5 3.3E-05 44.9 -1.7 61 73-133 650-715 (856)
121 PRK08198 threonine dehydratase 60.9 77 0.0017 30.3 10.0 37 156-192 326-362 (404)
122 PRK08178 acetolactate synthase 56.0 61 0.0013 25.2 6.7 37 159-195 10-46 (96)
123 cd04916 ACT_AKiii-YclM-BS_2 AC 55.6 61 0.0013 21.8 7.6 27 166-192 13-39 (66)
124 cd04924 ACT_AK-Arch_2 ACT doma 54.1 64 0.0014 21.6 7.7 27 166-192 13-39 (66)
125 KOG4447 Transcription factor T 53.1 9.2 0.0002 32.3 1.8 44 81-124 29-74 (173)
126 PF13840 ACT_7: ACT domain ; P 52.3 79 0.0017 22.1 6.6 32 158-189 7-42 (65)
127 COG4747 ACT domain-containing 51.8 55 0.0012 26.7 6.0 39 159-197 5-43 (142)
128 cd04892 ACT_AK-like_2 ACT doma 50.3 69 0.0015 20.8 8.8 27 166-192 12-38 (65)
129 COG0077 PheA Prephenate dehydr 49.0 1E+02 0.0022 28.6 8.2 45 162-206 199-244 (279)
130 PRK10622 pheA bifunctional cho 48.1 1.3E+02 0.0029 28.9 9.2 43 164-206 304-347 (386)
131 cd04890 ACT_AK-like_1 ACT doma 46.9 72 0.0016 21.5 5.4 24 166-189 12-35 (62)
132 PF02344 Myc-LZ: Myc leucine z 45.9 23 0.00049 21.9 2.3 20 79-98 10-29 (32)
133 PLN02317 arogenate dehydratase 45.2 1.3E+02 0.0028 29.1 8.5 33 164-196 290-322 (382)
134 cd04935 ACT_AKiii-DAPDC_1 ACT 44.3 1.2E+02 0.0026 21.9 7.1 26 164-189 11-36 (75)
135 cd04920 ACT_AKiii-DAPDC_2 ACT 44.3 1E+02 0.0023 21.2 7.4 51 166-229 12-62 (63)
136 COG2716 GcvR Glycine cleavage 43.9 27 0.00058 30.1 3.3 47 158-204 6-52 (176)
137 COG4747 ACT domain-containing 43.3 94 0.002 25.4 6.1 24 162-185 74-97 (142)
138 KOG3582 Mlx interactors and re 42.5 7.4 0.00016 40.1 -0.3 55 75-132 788-847 (856)
139 PF14689 SPOB_a: Sensor_kinase 39.5 1.2E+02 0.0026 21.2 5.6 46 78-130 12-57 (62)
140 cd04933 ACT_AK1-AT_1 ACT domai 38.9 1.6E+02 0.0034 21.7 7.5 26 164-189 11-36 (78)
141 PRK11898 prephenate dehydratas 38.7 2E+02 0.0044 26.4 8.5 45 162-206 201-247 (283)
142 cd04912 ACT_AKiii-LysC-EC-like 38.5 1.4E+02 0.0031 21.1 7.8 25 165-189 12-36 (75)
143 cd04906 ACT_ThrD-I_1 First of 38.3 1.6E+02 0.0034 21.6 8.7 31 160-192 4-34 (85)
144 PRK08526 threonine dehydratase 38.0 2.5E+02 0.0053 27.2 9.4 38 156-193 325-362 (403)
145 PRK10820 DNA-binding transcrip 35.6 56 0.0012 32.6 4.7 36 159-194 2-37 (520)
146 cd04934 ACT_AK-Hom3_1 CT domai 35.4 1.7E+02 0.0036 21.0 6.5 24 167-190 14-37 (73)
147 cd04868 ACT_AK-like ACT domain 34.3 1.2E+02 0.0026 19.1 5.9 25 167-191 13-37 (60)
148 PRK14637 hypothetical protein; 34.2 2.7E+02 0.0058 23.2 7.9 59 166-228 6-65 (151)
149 cd04921 ACT_AKi-HSDH-ThrA-like 30.5 1.9E+02 0.0042 20.2 9.5 57 165-232 12-68 (80)
150 cd04911 ACT_AKiii-YclM-BS_1 AC 29.7 2.1E+02 0.0045 21.2 5.7 23 166-188 13-35 (76)
151 cd04923 ACT_AK-LysC-DapG-like_ 29.4 1.7E+02 0.0036 19.1 7.2 24 166-189 12-35 (63)
152 TIGR01270 Trp_5_monoox tryptop 29.0 3.8E+02 0.0083 26.7 9.0 44 162-205 36-81 (464)
153 TIGR00656 asp_kin_monofn aspar 28.7 2.4E+02 0.0053 26.8 7.6 51 165-228 348-398 (401)
154 PF07334 IFP_35_N: Interferon- 28.4 1.9E+02 0.0041 21.6 5.2 14 156-169 62-75 (76)
155 COG2716 GcvR Glycine cleavage 27.7 85 0.0018 27.1 3.8 34 157-190 92-125 (176)
156 PRK08210 aspartate kinase I; R 26.1 2.6E+02 0.0056 26.7 7.3 29 166-196 351-379 (403)
157 COG3978 Acetolactate synthase 24.5 3.2E+02 0.0069 20.7 7.5 66 159-236 5-72 (86)
158 PRK06545 prephenate dehydrogen 23.4 2.4E+02 0.0052 26.6 6.4 39 158-196 291-329 (359)
159 cd04936 ACT_AKii-LysC-BS-like_ 22.9 2.3E+02 0.0049 18.5 7.2 24 166-189 12-35 (63)
160 TIGR02079 THD1 threonine dehyd 22.5 7E+02 0.015 24.0 9.8 35 157-191 325-359 (409)
161 TIGR01268 Phe4hydrox_tetr phen 22.0 4.3E+02 0.0092 26.1 7.9 44 162-205 21-65 (436)
162 TIGR01124 ilvA_2Cterm threonin 21.4 6.8E+02 0.015 24.9 9.4 48 156-205 324-371 (499)
163 COG2061 ACT-domain-containing 21.3 1.4E+02 0.003 25.4 3.8 35 158-192 6-40 (170)
164 PRK08639 threonine dehydratase 20.4 7.4E+02 0.016 23.9 9.3 36 156-191 335-370 (420)
165 cd04932 ACT_AKiii-LysC-EC_1 AC 20.1 3.4E+02 0.0074 19.5 8.1 26 164-189 11-36 (75)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.46 E-value=1.8e-13 Score=96.46 Aligned_cols=53 Identities=38% Similarity=0.557 Sum_probs=50.2
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHhhcCCC---CccchhhHHHHHHHHHHHHHHHH
Q 024326 74 ALKNHIEAERNRRKRINGHLDTLRSLIPGA---TKMDKATLLTEVISQLKELDKNA 126 (269)
Q Consensus 74 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dk~sil~~ai~yik~L~~~~ 126 (269)
....|+..||+||++||+.|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999988 89999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.44 E-value=1.9e-13 Score=95.38 Aligned_cols=49 Identities=43% Similarity=0.706 Sum_probs=46.4
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhcCCC-----CccchhhHHHHHHHHHHHHH
Q 024326 75 LKNHIEAERNRRKRINGHLDTLRSLIPGA-----TKMDKATLLTEVISQLKELD 123 (269)
Q Consensus 75 ~~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dk~sil~~ai~yik~L~ 123 (269)
+..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999975 78999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.40 E-value=5.9e-13 Score=91.81 Aligned_cols=49 Identities=39% Similarity=0.587 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhHHHHHhhcCC---CCccchhhHHHHHHHHHHHHHHHHH
Q 024326 79 IEAERNRRKRINGHLDTLRSLIPG---ATKMDKATLLTEVISQLKELDKNAM 127 (269)
Q Consensus 79 ~~~Er~RR~~in~~~~~LrslvP~---~~k~dk~sil~~ai~yik~L~~~~~ 127 (269)
+..||+||++||+.|..|+++||. ..|++|++||.+||+||++|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999994 5799999999999999999999876
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.15 E-value=6.5e-11 Score=112.48 Aligned_cols=59 Identities=34% Similarity=0.485 Sum_probs=52.6
Q ss_pred chHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHHHHHHHHHHH
Q 024326 71 SVAALKNHIEAERNRRKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLKELDKNAMEA 129 (269)
Q Consensus 71 ~~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik~L~~~~~~l 129 (269)
....+.+|+++|||||++||+++.+|..|||.+ .|..|.+||..+++||+.||+..++.
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 334568999999999999999999999999987 56779999999999999999987754
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.14 E-value=6.7e-11 Score=100.74 Aligned_cols=90 Identities=27% Similarity=0.361 Sum_probs=65.7
Q ss_pred CCCCCCCCcccccccchhhhhhhhccCCCCCcccchHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC-------Cccchh
Q 024326 37 NGSSSHSSLVLDSERGELVEANVKLQRKGVSEDRSVAALKNHIEAERNRRKRINGHLDTLRSLIPGA-------TKMDKA 109 (269)
Q Consensus 37 ~~~s~s~s~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-------~k~dk~ 109 (269)
+.++.++..+.|.+..+...+..+...|.| ++..|..+||+||+.||..+..|+.|||.+ .|+.||
T Consensus 32 GStsssSApNtdd~ds~~hS~a~k~syk~r-------rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA 104 (229)
T KOG1319|consen 32 GSTSASSAPNTDDEDSDYHSEAYKESYKDR-------RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKA 104 (229)
T ss_pred CCCCCCCCCCCCcccccchhHHHHhhHHHH-------HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHH
Confidence 334455555555555443333223222222 347899999999999999999999999954 488899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccC
Q 024326 110 TLLTEVISQLKELDKNAMEATEGF 133 (269)
Q Consensus 110 sil~~ai~yik~L~~~~~~l~~~~ 133 (269)
.||..+|+||.+|++++.+.+++.
T Consensus 105 ~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 105 IILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776653
No 6
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.09 E-value=1e-09 Score=81.55 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=56.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHh
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 233 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~ 233 (269)
.|+|.|++|||||.+|..+|-+++++|.+|.|+|.++++.++|++....+....++... ..|+++|..+++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~----~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGER----QRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHH----HHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999986655544454443 455555555544
No 7
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.99 E-value=4.6e-09 Score=78.07 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=55.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE--eeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHh
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 233 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is--t~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~ 233 (269)
++|.|.+|||+|.+|.++|..+|++|..|.|+ |.|+++.++|++ .+.++...+++. ...|+++|..+++
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~----~~~L~~~L~~~l~ 73 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKK----QAALCARLREEMV 73 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHH----HHHHHHHHHHHhc
Confidence 56889999999999999999999999999999 999999999999 555544444444 3455555555544
No 8
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.94 E-value=7.3e-09 Score=76.42 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHH
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSL 220 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l 220 (269)
.++|.+++|||+|.+|.++|.++||+|..|.|+|.|+++.++|++....+....+++..+.+
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l 64 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYI 64 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence 36788999999999999999999999999999999999999999985543333344443333
No 9
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.83 E-value=4.7e-08 Score=72.63 Aligned_cols=69 Identities=26% Similarity=0.471 Sum_probs=52.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHH
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 232 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist-~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~ 232 (269)
.++|.|+++||+|.+|..+|..+|++|+.|.|.| .+|+++++|+|.... +....+... ..|+++|..++
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~-~~~~~~~~~----~~l~~~L~~~L 71 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR-ELLHTKKRR----EETYDYLRAVL 71 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC-CCCCCHHHH----HHHHHHHHHHH
Confidence 4678999999999999999999999999999995 899999999997443 222222333 44555555444
No 10
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.83 E-value=4.3e-08 Score=71.91 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=43.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEee
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-EGRMKNIFVMAS 205 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~-~g~v~~vf~v~~ 205 (269)
..|.|.|+++||+|++|..+|..+|++|+.|.+.|. +|+++++|++..
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~ 50 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD 50 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC
Confidence 356788999999999999999999999999999877 799999999974
No 11
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.62 E-value=5.5e-07 Score=66.37 Aligned_cols=46 Identities=33% Similarity=0.486 Sum_probs=43.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEee
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMAS 205 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~ 205 (269)
++|.++++||+|.+|..+|..+|++|+.|.+.|.++++.++|++..
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d 48 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD 48 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc
Confidence 5688999999999999999999999999999999999999999974
No 12
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.60 E-value=4.6e-08 Score=88.32 Aligned_cols=55 Identities=33% Similarity=0.526 Sum_probs=48.5
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHhhcCC--------CCccchhhHHHHHHHHHHHHHHHHHH
Q 024326 74 ALKNHIEAERNRRKRINGHLDTLRSLIPG--------ATKMDKATLLTEVISQLKELDKNAME 128 (269)
Q Consensus 74 ~~~~h~~~Er~RR~~in~~~~~LrslvP~--------~~k~dk~sil~~ai~yik~L~~~~~~ 128 (269)
+..+|-+.||+||+|||+.|.+|+.|||. ..|++||-||+-|++|+++|+...+.
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34778899999999999999999999993 27899999999999999999886543
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.44 E-value=2.1e-07 Score=95.22 Aligned_cols=51 Identities=27% Similarity=0.487 Sum_probs=47.9
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHHHHHHH
Q 024326 75 LKNHIEAERNRRKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLKELDKN 125 (269)
Q Consensus 75 ~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik~L~~~ 125 (269)
+.+|+.+|||||+++|..+.+|.+|||.+ .|+||.+||.+||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 48899999999999999999999999975 6999999999999999988875
No 14
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.36 E-value=4.4e-06 Score=60.98 Aligned_cols=48 Identities=33% Similarity=0.453 Sum_probs=43.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE-eeCCeEEEEEEEeee
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGRMKNIFVMASC 206 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is-t~~g~v~~vf~v~~~ 206 (269)
.|.|.|+++||+|.+|..+|..+||+|+.|++. +.+|.++++|.|...
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~ 51 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW 51 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC
Confidence 456889999999999999999999999999996 679999999999743
No 15
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=1.2e-05 Score=58.77 Aligned_cols=48 Identities=31% Similarity=0.475 Sum_probs=43.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEee
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMAS 205 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~ 205 (269)
+++.|.+++++|+|.+|..+|.+++++|+++.+.+.++.+.++|++..
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~ 49 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD 49 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC
Confidence 356688999999999999999999999999999999899999999974
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=1.6e-05 Score=56.88 Aligned_cols=68 Identities=29% Similarity=0.419 Sum_probs=52.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHH
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 231 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v 231 (269)
.+.|.+++++|+|.+|+.+|.+++++|.++++.+.++.+.++|++....... ... .....|+++|..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~----~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDP----ERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCH----HHHHHHHHHHHhh
Confidence 3568899999999999999999999999999999888999999997533222 221 2344566666544
No 17
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.16 E-value=2.3e-06 Score=78.10 Aligned_cols=57 Identities=26% Similarity=0.414 Sum_probs=50.9
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC--CccchhhHHHHHHHHHHHHHHHHHHH
Q 024326 73 AALKNHIEAERNRRKRINGHLDTLRSLIPGA--TKMDKATLLTEVISQLKELDKNAMEA 129 (269)
Q Consensus 73 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dk~sil~~ai~yik~L~~~~~~l 129 (269)
-++.--|.-||||-+-||..|..||+|+|.. .|++||+||+.+.+||.+|+.+..+|
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 4556778899999999999999999999974 89999999999999999999876554
No 18
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.07 E-value=8.9e-06 Score=72.66 Aligned_cols=60 Identities=13% Similarity=0.363 Sum_probs=50.6
Q ss_pred cchHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC--Cccc-hhhHHHHHHHHHHHHHHHHHHH
Q 024326 70 RSVAALKNHIEAERNRRKRINGHLDTLRSLIPGA--TKMD-KATLLTEVISQLKELDKNAMEA 129 (269)
Q Consensus 70 ~~~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~d-k~sil~~ai~yik~L~~~~~~l 129 (269)
.....+..||.-||+||+.|.+.|..|+.+||.. .+.. .++||..|+.||+.|+.+....
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 3445678999999999999999999999999976 3333 6899999999999999876543
No 19
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.04 E-value=2.6e-05 Score=82.02 Aligned_cols=72 Identities=24% Similarity=0.395 Sum_probs=56.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHH
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 232 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~ 232 (269)
....++|.|.+|||+|++|.++|.++|++|.+|.|+|.++++.++|+|.... +...+++. ...|+++|..++
T Consensus 807 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~-g~~l~~~~----~~~l~~~L~~~l 878 (884)
T PRK05007 807 RRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD-RRALNEEL----QQELRQRLTEAL 878 (884)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC-CCcCCHHH----HHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999997543 33223333 455555555554
No 20
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.02 E-value=2.3e-06 Score=88.21 Aligned_cols=58 Identities=24% Similarity=0.427 Sum_probs=53.1
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC-CccchhhHHHHHHHHHHHHHHHHHHHh
Q 024326 73 AALKNHIEAERNRRKRINGHLDTLRSLIPGA-TKMDKATLLTEVISQLKELDKNAMEAT 130 (269)
Q Consensus 73 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-~k~dk~sil~~ai~yik~L~~~~~~l~ 130 (269)
..+.+||.+|||.|..||+++.+|+.+||+. .|+.|.++|..||+||++|+...+.+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk 333 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLK 333 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccc
Confidence 4468999999999999999999999999987 899999999999999999998776654
No 21
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.00 E-value=3.4e-05 Score=81.27 Aligned_cols=77 Identities=21% Similarity=0.457 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHh
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 233 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~ 233 (269)
...|.|.+.++||+|++|..+|..+||+|+.|.|+|.|+++.++|+|....+.....+...+.+.+.|.++|....+
T Consensus 814 ~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 890 (895)
T PRK00275 814 VTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE 890 (895)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 35677999999999999999999999999999999999999999999854433333333444455555555544333
No 22
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.89 E-value=6e-05 Score=79.05 Aligned_cols=71 Identities=18% Similarity=0.374 Sum_probs=55.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHH
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 231 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v 231 (269)
....++|.+.+|||+|.+|.++|.++|++|..|.|+|.++++.++|+|....+....+.+ ...|+++|...
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~-----~~~l~~~L~~~ 852 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEE-----RKALKSRLLSN 852 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHH-----HHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999754433222221 25566665544
No 23
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.86 E-value=0.00023 Score=50.39 Aligned_cols=47 Identities=34% Similarity=0.533 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEee
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMAS 205 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~ 205 (269)
.+.|.|++++|+|.+|+.+|.++++.|.++.+.+.++....+|.+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~ 48 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD 48 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC
Confidence 35678999999999999999999999999999988778777888764
No 24
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.79 E-value=8.2e-05 Score=66.57 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=52.0
Q ss_pred chHHhhhhhHHHHHHHHHHHHhHHHHHh-hcCCC-CccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024326 71 SVAALKNHIEAERNRRKRINGHLDTLRS-LIPGA-TKMDKATLLTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 71 ~~~~~~~h~~~Er~RR~~in~~~~~Lrs-lvP~~-~k~dk~sil~~ai~yik~L~~~~~~l~~~ 132 (269)
+..+++.-.+.||||=.|+|+.|.+|+. -.++. ..+-|.-||..||+||..||.-++++.+.
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455677889999999999999999954 44554 77899999999999999999999988543
No 25
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.75 E-value=0.00012 Score=76.84 Aligned_cols=71 Identities=27% Similarity=0.411 Sum_probs=55.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHH
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 232 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~ 232 (269)
...|.|.+.++||+|++|..+|..+|++|+.|.|+|.|+++.++|+|....+.. .+.. + ...|+++|...+
T Consensus 796 ~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~-~~~~---~-~~~l~~~L~~~l 866 (869)
T PRK04374 796 RTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRP-LSES---A-RQALRDALCACL 866 (869)
T ss_pred eEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCc-CChH---H-HHHHHHHHHHHh
Confidence 456779999999999999999999999999999999999999999997543332 2221 1 256666666554
No 26
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.75 E-value=6.7e-05 Score=56.46 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=40.2
Q ss_pred HHHHHhHHHHHhhcCCC------CccchhhHHHHHHHHHHHHHHHHHHHhccC
Q 024326 87 KRINGHLDTLRSLIPGA------TKMDKATLLTEVISQLKELDKNAMEATEGF 133 (269)
Q Consensus 87 ~~in~~~~~LrslvP~~------~k~dk~sil~~ai~yik~L~~~~~~l~~~~ 133 (269)
++||+.+..|+.|+|.. .|..-+-+|++|+.||+.|+.+|.+|.+.+
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerL 72 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999953 455566689999999999999999997653
No 27
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.61 E-value=6.5e-05 Score=66.98 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=53.1
Q ss_pred hHHhhhhhHHHHHHHHHHHHhHHHHHhhcCC----CCccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024326 72 VAALKNHIEAERNRRKRINGHLDTLRSLIPG----ATKMDKATLLTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 72 ~~~~~~h~~~Er~RR~~in~~~~~LrslvP~----~~k~dk~sil~~ai~yik~L~~~~~~l~~~ 132 (269)
..++..++..||+|=..+|..|..||.+||. .+|..|..+|.-||.||++|+.-++.-+..
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 3456778888999999999999999999994 478999999999999999999988766543
No 28
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.59 E-value=0.00035 Score=73.35 Aligned_cols=48 Identities=33% Similarity=0.507 Sum_probs=44.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
...|.|.|+++||+|.+|..+|..+|++|+.|.|+|.|+++.++|+|.
T Consensus 786 ~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 786 YYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred EEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 345779999999999999999999999999999999999999999994
No 29
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.56 E-value=0.00046 Score=73.15 Aligned_cols=74 Identities=28% Similarity=0.394 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
...|.|.|.++||+|.+|..+|..+|++|..|.|.|.++++.++|++....+.....+. ....|+++|..++..
T Consensus 843 ~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~----~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 843 FTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEA----RQAAIRRALLAALAE 916 (931)
T ss_pred eEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHH----HHHHHHHHHHHHhcC
Confidence 35677999999999999999999999999999999999999999999755433323322 245677777777654
No 30
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.47 E-value=0.00074 Score=70.90 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE-eeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is-t~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
...|.|.++++||+|.+|..+|..+||+|+.|.|. |.+|+++++|+|....+.....+ .....|.++|..++..
T Consensus 668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~----~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAE----RVFQELLQGLVDVLAG 742 (850)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcH----HHHHHHHHHHHHHHcC
Confidence 34577899999999999999999999999999998 88999999999985443322222 2344566666666655
No 31
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.43 E-value=0.0012 Score=69.61 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhc
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-EGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 235 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~-~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~ 235 (269)
...|.|+|++++|+|.+|..+|..+||+|+.|.|.|. +|+++++|+|....+... .. .....|.++|..++...
T Consensus 701 ~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~-~~----~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 701 GTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL-SQ----DRHQVIRKALEQALTQS 775 (884)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC-CH----HHHHHHHHHHHHHHcCC
Confidence 3566789999999999999999999999999998755 569999999985433322 22 23445666666666543
No 32
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.39 E-value=0.001 Score=69.93 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=55.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist-~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
..|.|.|+++||+|++|..+|..+||+|+.|.|.| .+|+++++|+|....+.. ... .....|+++|..++..
T Consensus 678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~-~~~----~~~~~l~~~L~~aL~~ 750 (854)
T PRK01759 678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKL-LEF----DRRRQLEQALTKALNT 750 (854)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCC-CCH----HHHHHHHHHHHHHHcC
Confidence 46678999999999999999999999999999976 899999999998543322 222 2334566666666654
No 33
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.38 E-value=0.00099 Score=69.95 Aligned_cols=70 Identities=24% Similarity=0.371 Sum_probs=54.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHH
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 231 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v 231 (269)
...+.|.|.++||+|.+|.++|..+|++|.+|.|+|.++++.++|++....+....+ +. ...|+++|...
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~----~~~l~~~L~~~ 848 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EE----EQRLLEVLAAS 848 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HH----HHHHHHHHHHH
Confidence 345779999999999999999999999999999999999999999997544333232 23 35555555543
No 34
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.38 E-value=0.00076 Score=70.16 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHH
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 228 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL 228 (269)
..|.|.|.++||+|.+|..+|..+|++|..|.|+|.|+++.++|+|....+....+ . ...|+++|
T Consensus 708 t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~-----~-~~~l~~~L 772 (774)
T PRK03381 708 TVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLAD-----A-RAAVEQAV 772 (774)
T ss_pred EEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCch-----H-HHHHHHHh
Confidence 56779999999999999999999999999999999999999999997544332222 1 45566655
No 35
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.36 E-value=0.0035 Score=46.14 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=49.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
+.|++.+++|||++..|..+|.++|.+|..++.++.++.+..++.+.... .....|+.+|..+..+
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~-----------~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE-----------DSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH-----------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc-----------ccHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999987777775431 2345666666666443
No 36
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.35 E-value=0.0026 Score=44.29 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCC
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG 195 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g 195 (269)
.|.+.|+++||+|.+|..+|.++|++|.++.+.+.++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 4568899999999999999999999999999998877
No 37
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00085 Score=69.02 Aligned_cols=53 Identities=26% Similarity=0.434 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccc
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELN 210 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~ 210 (269)
..+++.+.+|||+|..|..+|.+++|+|++|.|+|+|.++.++|++.......
T Consensus 792 t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~ 844 (867)
T COG2844 792 TVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQA 844 (867)
T ss_pred eEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecccccc
Confidence 34678899999999999999999999999999999999999999998655443
No 38
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.25 E-value=0.0017 Score=68.53 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=45.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEE-EeeCCeEEEEEEEeeecc
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI-ATLEGRMKNIFVMASCKE 208 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~i-st~~g~v~~vf~v~~~k~ 208 (269)
+.|.|.|+++||+|.+|..+|..+|++|+.|.| ++.+|.++++|+|....+
T Consensus 705 t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g 756 (895)
T PRK00275 705 TQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDG 756 (895)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCC
Confidence 456688999999999999999999999999998 677899999999985443
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.11 E-value=0.0027 Score=66.78 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEE-EeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI-ATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~i-st~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
+.|.|+|+++||+|.+|..+|..+||+|+.|.| ++.+|.++++|.|....+. .... .....|.++|.+++..
T Consensus 679 ~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~----~~~~~i~~~l~~~l~~ 751 (856)
T PRK03059 679 LQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYR----DIINLVEHELAERLAE 751 (856)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChH----HHHHHHHHHHHHHHcC
Confidence 466789999999999999999999999999999 5789999999999753222 1122 2344566666666544
No 40
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.10 E-value=0.0079 Score=44.40 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=49.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
+.+.+.|+++||+..+|.+.|.++|..|+.++....++.+...+.+.... .-...|.++|..+-.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~-----------~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW-----------DAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc-----------ccHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999875555554321 1135566666665444
No 41
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.01 E-value=0.0037 Score=65.14 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEee
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMAS 205 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~ 205 (269)
+.|.|.|+++||++.+|..+|..+|++|+.|+|.|.+|.++++|.|..
T Consensus 600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~ 647 (774)
T PRK03381 600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP 647 (774)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC
Confidence 456789999999999999999999999999999999999999999974
No 42
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.00 E-value=0.0043 Score=65.84 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=52.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHH
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 232 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist-~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~ 232 (269)
+.|.|.|++++|+|.+|..+|..+|++|+.|.|.| .+|+++++|.|....+........ ...|.++|..++
T Consensus 733 t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~----~~~l~~~L~~~l 804 (931)
T PRK05092 733 TEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRR----LARLAKAIEDAL 804 (931)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHH----HHHHHHHHHHHH
Confidence 45678899999999999999999999999999876 799999999997433222122223 344555555554
No 43
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.71 E-value=0.018 Score=42.29 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=40.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEee
Q 024326 155 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGRMKNIFVMAS 205 (269)
Q Consensus 155 ~~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~--~g~v~~vf~v~~ 205 (269)
.+.+.+.|.+.+++|+|.+|..++.+.++.|.+.++.+. ++...-.|.+..
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V 56 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV 56 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE
Confidence 467888899999999999999999999999999999885 566655566654
No 44
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.65 E-value=0.013 Score=61.94 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=53.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist-~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
+.|.|.|++++|+|.+|..+|..+|++|+.|.|.| .+|.++++|.|....... . .. ...|.++|..++..
T Consensus 691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~-~~----~~~i~~~l~~~l~~ 761 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--D-GD----PQRLAAALRQVLAG 761 (869)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--h-HH----HHHHHHHHHHHHcC
Confidence 45678999999999999999999999999999975 799999999997433221 1 11 23366666666654
No 45
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.16 E-value=0.04 Score=41.41 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=38.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
.+.+.|+++||++.+|.+.|-.+|++|...+..+.++.+.-.+.+.
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~ 48 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVD 48 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEE
Confidence 4678899999999999999999999999999988877764444443
No 46
>PRK00194 hypothetical protein; Validated
Probab=96.11 E-value=0.047 Score=41.05 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEE
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVM 203 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v 203 (269)
+.+.+.|+++||++.+|.+.|.++|++|...+..+.++.+.-.+.+
T Consensus 4 ~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v 49 (90)
T PRK00194 4 AIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV 49 (90)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE
Confidence 4567899999999999999999999999999988877765433333
No 47
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.07 E-value=0.093 Score=38.31 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=32.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
+.+.|+++||++.+|.+.|.++|++|...+..+.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 45889999999999999999999999999998877
No 48
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.06 E-value=0.076 Score=38.68 Aligned_cols=45 Identities=27% Similarity=0.374 Sum_probs=39.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
|++.+++|||+..++.++|.++|++|...+.++.++.+.-.+.+.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~ 46 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQ 46 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEE
Confidence 467899999999999999999999999999999998876566554
No 49
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.99 E-value=0.0069 Score=59.10 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=49.2
Q ss_pred cchHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHHHHHHHHHH
Q 024326 70 RSVAALKNHIEAERNRRKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLKELDKNAME 128 (269)
Q Consensus 70 ~~~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik~L~~~~~~ 128 (269)
|..++++..|..||-|=..||+.|++|..+.-.- ..-.|.-||..||.-|-.|++||.+
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 4446778899999999999999999998876422 3335899999999999999999986
No 50
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.96 E-value=0.1 Score=37.76 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=30.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
|.+.|+++||++.+|.+.|.++|+.|...+..+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 568899999999999999999999999998875
No 51
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.66 E-value=0.15 Score=35.55 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=29.0
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
.|.++++||.|.+|+++|.+.|++|.+.+....
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 366899999999999999999999998887653
No 52
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.46 E-value=0.21 Score=35.65 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=35.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEe
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE-GRMKNIFVMA 204 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~-g~v~~vf~v~ 204 (269)
+.+.+.++||+|.+|+.+|.+.|..|...++.... +.....|.++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ve 47 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVD 47 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEE
Confidence 45779999999999999999999999999987654 5544444443
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.43 E-value=0.13 Score=36.77 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEe
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-EGRMKNIFVMA 204 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~-~g~v~~vf~v~ 204 (269)
|++.+.+++++|+|.+|+++|.+.+.+|...+.... ++...-.|.+.
T Consensus 1 ~~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~ 48 (76)
T cd04888 1 VTLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISID 48 (76)
T ss_pred CEEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEE
Confidence 356688999999999999999999999999877543 35444445554
No 54
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.072 Score=55.31 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=52.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEE-EeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEI-ATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~i-st~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
.|.|.|+++|.+|..+..++...|++|+.|+| +|.+|+.+++|+|....+. ...+ .-...+.+.|..++..
T Consensus 686 eV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~-~~~~----dr~~~~~~~l~~~l~s 757 (867)
T COG2844 686 EVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF-PVEE----DRRAALRGELIEALLS 757 (867)
T ss_pred EEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCC-ccch----hHHHHHHHHHHHHHhc
Confidence 45588999999999999999999999999998 6889999999999744332 2222 2334444444444444
No 55
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.83 E-value=0.33 Score=44.79 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=56.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHH-HHhhcc
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRS-VLDKFS 236 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~--g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~-v~~k~~ 236 (269)
+.+.|++++|+...|...|-++|..|+.++.+..+ |++.-.+.+. ...... ....++++|.. +-++.+
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~--~~~~~~-------~~~~l~~~l~~~~~~~~~ 73 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQ--LEGFRL-------EESSLLAAFKSALAEKFE 73 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEE--eCCCCC-------CHHHHHHHHHHHHHHHhC
Confidence 56889999999999999999999999999888743 5543222222 111001 14566677777 555444
Q ss_pred cchhhhccccCCCCCceeeeccCCC
Q 024326 237 ATEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 237 ~~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
..-... ...++.|+-+|-|-+
T Consensus 74 l~i~l~----~~~~~~ki~vl~Sg~ 94 (280)
T TIGR00655 74 MTWELI----LADKLKRVAILVSKE 94 (280)
T ss_pred CEEEEe----cCCCCcEEEEEEcCC
Confidence 322211 134567888776544
No 56
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.81 E-value=0.19 Score=36.09 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=37.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
|.|.||++.|+--+|.+.+-+.||.|....++|-|.--.-+|-+.
T Consensus 3 itvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv 47 (69)
T cd04894 3 ITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVV 47 (69)
T ss_pred EEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEe
Confidence 568899999999999999999999999999999777544445444
No 57
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.51 E-value=0.55 Score=43.35 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=59.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe--eCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT--LEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist--~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
.+.|++.|++|||+..+|.++|.++|++|...+.++ .+|.+.-.+.+..... +.. ...|+++|..+-+.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~-----~~~----~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL-----IFN----LETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC-----CCC----HHHHHHHHHHHHHH
Confidence 455778999999999999999999999999999998 7775322222221010 111 45666666666555
Q ss_pred cccchhhhccccCCCCCceeeeccCCC
Q 024326 235 FSATEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 235 ~~~~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
....-... ...++.|+-+|-|.+
T Consensus 77 l~l~i~l~----~~~~~~ri~vl~Sg~ 99 (286)
T PRK06027 77 FEMDWRLL----DSAERKRVVILVSKE 99 (286)
T ss_pred hCCEEEEc----ccccCcEEEEEEcCC
Confidence 44322111 234667888886544
No 58
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.40 E-value=0.03 Score=46.86 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=47.7
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHhhcCCC--CccchhhHHHHHHHHHHHHHHHHH
Q 024326 74 ALKNHIEAERNRRKRINGHLDTLRSLIPGA--TKMDKATLLTEVISQLKELDKNAM 127 (269)
Q Consensus 74 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dk~sil~~ai~yik~L~~~~~ 127 (269)
++.-|+..||+|=..+|+.|..||.++|.. .|.+|.--|.-|..||-.|-+-.+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 557899999999999999999999999965 788898899999999998876443
No 59
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.17 E-value=0.46 Score=44.04 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE--eeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhc
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 235 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is--t~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~ 235 (269)
+.|.+.|++++|+...|...|-++|++|+.++-. +..+.++-.+.+. +..... .....++++|..+-.+.
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~-~~~~~~-------~~~~~l~~~l~~l~~~l 81 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH-AQSAEA-------ASVDTFRQEFQPVAEKF 81 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE-cCCCCC-------CCHHHHHHHHHHHHHHh
Confidence 4577999999999999999999999999999885 3333332111111 110000 11456777777766554
Q ss_pred ccchhhhccccCCCCCceeeeccCCC
Q 024326 236 SATEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 236 ~~~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
+..-... ...++.|+-+|-|-+
T Consensus 82 ~l~~~i~----~~~~~~kiavl~Sg~ 103 (289)
T PRK13010 82 DMQWAIH----PDGQRPKVVIMVSKF 103 (289)
T ss_pred CCeEEEe----cCCCCeEEEEEEeCC
Confidence 4432211 134567888886554
No 60
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.01 E-value=0.43 Score=34.52 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=32.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR 196 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~ 196 (269)
+.|.|.+++|+|.+|+.++.+.+..|...++.+. +.
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 5677999999999999999999999999998765 44
No 61
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.44 E-value=0.99 Score=30.00 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=33.5
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEE
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE-GRMKNIFVM 203 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~-g~v~~vf~v 203 (269)
.+.+++++|.+.+|++.|.++++++....+...+ +.....+.+
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL 45 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence 4668899999999999999999999999887655 433333334
No 62
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.35 E-value=1.1 Score=41.52 Aligned_cols=92 Identities=12% Similarity=0.119 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhccc
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 237 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~~~ 237 (269)
+.|.+.|+++||+..+|.+.|.+++++|...+..+-.+.-...+.+...-..+ .+ ...|+++|..+-+....
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-~~-------~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-LD-------EDALRAGFAPIAARFGM 79 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-CC-------HHHHHHHHHHHHHHhCc
Confidence 45678899999999999999999999999998863222212223332211111 11 45566666665444332
Q ss_pred chhhhccccCCCCCceeeeccCCC
Q 024326 238 TEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 238 ~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
.-... ...++.|+-+|-|.+
T Consensus 80 ~i~i~----~~~~~~ri~vl~Sg~ 99 (286)
T PRK13011 80 QWELH----DPAARPKVLIMVSKF 99 (286)
T ss_pred EEEEe----ecccCceEEEEEcCC
Confidence 21111 134456888886553
No 63
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.05 E-value=0.91 Score=31.88 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=29.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
+.+.+.+++|+|.+|+..|.+.+..|...+..+.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 4577899999999999999999999999887654
No 64
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=92.84 E-value=0.11 Score=47.31 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=46.3
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC---CccchhhHHHHHHHHHHHHHHH
Q 024326 73 AALKNHIEAERNRRKRINGHLDTLRSLIPGA---TKMDKATLLTEVISQLKELDKN 125 (269)
Q Consensus 73 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dk~sil~~ai~yik~L~~~ 125 (269)
..+..-|..||+|--.+|+.|..||.++|.. .|+.|.-.|.-|-.||..|++-
T Consensus 71 ~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 71 LRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 3457778999999999999999999999953 8889999999999999988754
No 65
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.79 E-value=1.6 Score=31.40 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=35.0
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCC-eEEEEEEEeee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-RMKNIFVMASC 206 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g-~v~~vf~v~~~ 206 (269)
+..+++||.|.+|++.+..+|+.+.+.......+ .-.+.|++...
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 4457799999999999999999999998876554 34455666543
No 66
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.67 E-value=0.7 Score=32.02 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
.+.+.+++++|.|.++++.|.+.+..|.+.+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 35577999999999999999999999998887665
No 67
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.61 E-value=0.97 Score=28.37 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=29.8
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
.+.|++++|.+.+|+..|...++.+.........
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 4678899999999999999999999999876643
No 68
>PRK04435 hypothetical protein; Provisional
Probab=92.53 E-value=1.2 Score=37.09 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=38.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEee
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGRMKNIFVMAS 205 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist-~~g~v~~vf~v~~ 205 (269)
..+.+.+.+++++|+|.+|+++|.+.+.+|...+... .+|...-+|.+..
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 3566778899999999999999999999999988754 3565544555543
No 69
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=92.18 E-value=0.62 Score=31.95 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=35.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEE
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GRMKNIFVM 203 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~--g~v~~vf~v 203 (269)
+.+..++++|++.+|++.|.+.++.|.+..+.... +.....|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 44678999999999999999999999999887654 555445555
No 70
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=92.05 E-value=0.78 Score=31.01 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=34.6
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEE
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE-GRMKNIFVM 203 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~-g~v~~vf~v 203 (269)
.+..+++||.|.++++.|.+.+..|....+...+ +.....|.+
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 3568999999999999999999999888876655 555555555
No 71
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=91.73 E-value=1.2 Score=40.74 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=56.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhcccc
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSAT 238 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~~~~ 238 (269)
.+.++|++++|+...|-..|.+.|..|+.++-.+ +.....|.+...-..... + .....++++|..+-+++...
T Consensus 9 ~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR~~f~~~~~-~----~~~~~l~~~f~~~a~~f~m~ 81 (287)
T COG0788 9 ILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMRVEFEGEGG-P----LDREALRAAFAPLAEEFGMD 81 (287)
T ss_pred EEEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEEEEEecCCC-c----ccHHHHHHHHHHHHHhhCce
Confidence 4568899999999999999999999999987663 222222333322211111 1 22566777777776666643
Q ss_pred hhhhccccCCCCCceeeeccC
Q 024326 239 EEFLLGARLSNKRRRVSLFDS 259 (269)
Q Consensus 239 ~~~~~~~~~~~kr~r~~~~~~ 259 (269)
-. -....+|.|+-++-|
T Consensus 82 ~~----~~~~~~~~ri~i~VS 98 (287)
T COG0788 82 WR----LHDAAQRKRIAILVS 98 (287)
T ss_pred eE----EeccccCceEEEEEe
Confidence 22 123677777876643
No 72
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.62 E-value=0.15 Score=50.74 Aligned_cols=41 Identities=37% Similarity=0.600 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHH
Q 024326 80 EAERNRRKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLK 120 (269)
Q Consensus 80 ~~Er~RR~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik 120 (269)
---||-|+|+|.-|..|.+|+|-. .|+||.|||.=+|.|++
T Consensus 31 NPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 31 NPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred CcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 345778999999999999999953 99999999999999986
No 73
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.30 E-value=0.86 Score=39.67 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=42.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEE
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVM 203 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v 203 (269)
-.+.|++.+++|||+...|.++|.++|..|..++.+..+|.+.-++.+
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 346678999999999999999999999999999999999987555555
No 74
>PRK07334 threonine dehydratase; Provisional
Probab=91.30 E-value=1.6 Score=42.07 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=39.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee-----CCeEEEEEEEe
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-----EGRMKNIFVMA 204 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~-----~g~v~~vf~v~ 204 (269)
+.+.+.|.+.+|+|+|.+|+.+|.+.+.+|.+.++.+. ++...-.|.+.
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~ 378 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE 378 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE
Confidence 56788899999999999999999999999999998754 45543344443
No 75
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=91.09 E-value=0.23 Score=47.86 Aligned_cols=41 Identities=37% Similarity=0.478 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHHH
Q 024326 81 AERNRRKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLKE 121 (269)
Q Consensus 81 ~Er~RR~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik~ 121 (269)
+-|.||++-|--|.+|..++|-. ...||++|+.=|..|||.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 56899999999999999999964 669999999999999984
No 76
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=91.09 E-value=3.7 Score=29.89 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.9
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCC-eEEEEEEEeee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-RMKNIFVMASC 206 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g-~v~~vf~v~~~ 206 (269)
+.-++++|.|.+|++.+.++|+.+.+.......+ ...++|++...
T Consensus 6 ~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 6 FTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 4457899999999999999999999998766533 44466776543
No 77
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=90.82 E-value=3 Score=28.51 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=34.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEe
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGRMKNIFVMA 204 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~--~g~v~~vf~v~ 204 (269)
+.+.+.+++|+|.+|+..|.+.+..+...+..+. ++.....|.+.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 3466889999999999999999999999887764 34444444443
No 78
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=90.79 E-value=0.42 Score=43.23 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=46.5
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHhhcCCC---CccchhhHHHHHHHHHHHHHHHHH
Q 024326 74 ALKNHIEAERNRRKRINGHLDTLRSLIPGA---TKMDKATLLTEVISQLKELDKNAM 127 (269)
Q Consensus 74 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dk~sil~~ai~yik~L~~~~~ 127 (269)
++..-+..||+|-..+|..|..||.+||.. .|++|-.-|+.|-.||--|-....
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 345678899999999999999999999965 778888899999999998776553
No 79
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.04 E-value=4.3 Score=28.33 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=29.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
+.+.++++||.|.++++.|.++|++|........
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 4567999999999999999999999988766554
No 80
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.60 E-value=0.34 Score=49.42 Aligned_cols=42 Identities=33% Similarity=0.513 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHH
Q 024326 79 IEAERNRRKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLK 120 (269)
Q Consensus 79 ~~~Er~RR~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik 120 (269)
.-+-|-||.|-|+-|.+|..+||-. ..+|||+|+.=||.|++
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 3577899999999999999999943 77899999999999998
No 81
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=89.41 E-value=2.1 Score=30.06 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
++.|..+++||.|.+|++.|.+.|+.|.+.-+...++. .++.+.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 45677899999999999999999999998877665553 345553
No 82
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.10 E-value=2.1 Score=29.30 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=28.7
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
.+.+++++|.|.+|+..|.+++.+|.......
T Consensus 3 ~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 3 IVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 46789999999999999999999999887765
No 83
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.00 E-value=3.3 Score=29.46 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
+.+.-+++||.|.++++.|.++|..|++......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 3456789999999999999999999998876654
No 84
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.92 E-value=6 Score=27.67 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEE
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGRMKNIFVM 203 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~--~g~v~~vf~v 203 (269)
++.+..+++||.|.++++.|.+.++.|.+...... ++...-+|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 55677899999999999999999999987754332 3444334444
No 85
>PRK08577 hypothetical protein; Provisional
Probab=88.84 E-value=4.9 Score=32.66 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=33.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
.+.+.+.+.+++|+|.+|++.|.+++.++.+.+..+..
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 45677889999999999999999999999988876653
No 86
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.51 E-value=2.6 Score=28.79 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=27.4
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
.+.-+++||.|.+++..|.+.|+.|.+......
T Consensus 3 ~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~ 35 (65)
T cd04882 3 AVEVPDKPGGLHEILQILSEEGINIEYMYAFVE 35 (65)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence 355689999999999999999999987765443
No 87
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=84.49 E-value=6.9 Score=33.05 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=35.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEE
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GRMKNIFVM 203 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~--g~v~~vf~v 203 (269)
+.+.-+++||.|.+|...|...|+.|.+..+...+ +...-++.+
T Consensus 4 isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V 49 (157)
T TIGR00119 4 LSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV 49 (157)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE
Confidence 45778999999999999999999999999887654 444444444
No 88
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.15 E-value=12 Score=28.57 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=35.5
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMAS 205 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~ 205 (269)
+..+++||.|.+++..+...|+.+.+...-...+. --+.|++..
T Consensus 19 f~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi 63 (90)
T cd04931 19 FSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL 63 (90)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 55688999999999999999999999998765433 346777764
No 89
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=83.53 E-value=9.6 Score=27.54 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=35.6
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEeee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMASC 206 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~~ 206 (269)
+..+++||-|.+++..+...|+.+.+.+.-...+. --+.|++...
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 34577999999999999999999999998765543 3466777643
No 90
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=83.50 E-value=7.9 Score=40.54 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=40.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEe
Q 024326 155 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGRMKNIFVMA 204 (269)
Q Consensus 155 ~~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~--~g~v~~vf~v~ 204 (269)
.+.+.|.|.+.+++|+|.+|..+|.+.++.|..+++.+. ++...-.|.++
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie 715 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE 715 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE
Confidence 356788899999999999999999999999999998765 45544445554
No 91
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=83.15 E-value=8.9 Score=32.52 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=35.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEE
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GRMKNIFVM 203 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~--g~v~~vf~v 203 (269)
+.+.-+++||.|.+|...|...|+.|.+..+...+ +...-++.+
T Consensus 5 IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V 50 (161)
T PRK11895 5 LSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT 50 (161)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE
Confidence 55778999999999999999999999999887554 444444444
No 92
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.91 E-value=15 Score=26.81 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=34.3
Q ss_pred EcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEee
Q 024326 163 CCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMAS 205 (269)
Q Consensus 163 ~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~ 205 (269)
.-+++||.|.+++..+...|+.+.+.+.-...+. --+.|++..
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 3477899999999999999999999998765333 456677764
No 93
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=82.84 E-value=3 Score=32.09 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=39.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
+.|++.-.+|+|+...|..+|-++|..|+..+=+-.+|++.-.+.+.
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~ 50 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD 50 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence 45678899999999999999999999999998888888875555554
No 94
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.03 E-value=13 Score=26.22 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=26.5
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
+.=+++||-|.++++.|.. +.+|+..+....
T Consensus 3 v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 3 VTFPERPGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred EECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 4568999999999999999 999998877654
No 95
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=81.84 E-value=1.3 Score=30.94 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=32.3
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEE
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVM 203 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v 203 (269)
-+.+.+++|+|.+|+..|.+.+..|...+....++...-.|.+
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 3568999999999999999999999777655444554333333
No 96
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=80.68 E-value=6 Score=27.57 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=33.0
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe--eCCeEEEEEEE
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIAT--LEGRMKNIFVM 203 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist--~~g~v~~vf~v 203 (269)
+..++++|.+.+|.+.|.+.|+.|.+..... .++....+|.+
T Consensus 4 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 4 VRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4688999999999999999999998776654 35666545555
No 97
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=80.62 E-value=11 Score=39.19 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=40.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCC-eEEEEEEEe
Q 024326 155 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-RMKNIFVMA 204 (269)
Q Consensus 155 ~~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g-~v~~vf~v~ 204 (269)
.+.+.|.|.+.+++|+|.+|+.+|.+.++.|.++++.+.++ .+.-.|.+.
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie 674 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT 674 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE
Confidence 35678889999999999999999999999999999877654 433334444
No 98
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=80.14 E-value=14 Score=31.75 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=29.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
+.+..+++||+|.+|...|...|++|.+.++..
T Consensus 5 isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 5 LSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 567789999999999999999999999988865
No 99
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=79.20 E-value=15 Score=30.46 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=39.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE-eeCCeEEEEEEEe
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGRMKNIFVMA 204 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is-t~~g~v~~vf~v~ 204 (269)
..+.+.+.-++|.|.|+++++++-..++.|++.+=+ ..+|+.--++.+.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 456777889999999999999999999999988765 7788774444443
No 100
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=78.99 E-value=13 Score=38.50 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=40.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEe
Q 024326 155 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE-GRMKNIFVMA 204 (269)
Q Consensus 155 ~~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~-g~v~~vf~v~ 204 (269)
.+.+.|.|.+.+++|+|.+|+.+|.+.+..|.+.++.+.+ +.+.-.|.+.
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie 658 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE 658 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE
Confidence 3567788999999999999999999999999999998764 4443334443
No 101
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.16 E-value=19 Score=25.09 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHH
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 228 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL 228 (269)
+.+|++.+++++|.+.++.|.-...++.+-.+ +|.+.. ...+...+.||+.|
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si--s~~v~~---------~~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNI--SLIVND---------SEAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceE--EEEEeH---------HHHHHHHHHHHHHH
Confidence 35789999999999999999776666655544 244431 12334566666665
No 102
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=77.45 E-value=20 Score=24.37 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHH
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 228 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL 228 (269)
+.++++.+|+++|.+.++.|.-...++.+.. -+|.+..+ ..+...+.||++|
T Consensus 13 ~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~--is~~v~~~---------~~~~~~~~lh~~~ 64 (66)
T cd04922 13 GTPGVAATFFSALAKANVNIRAIAQGSSERN--ISAVIDED---------DATKALRAVHERF 64 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcccE--EEEEEeHH---------HHHHHHHHHHHHH
Confidence 4689999999999999999976654443322 23455321 1234466666665
No 103
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=77.07 E-value=35 Score=29.60 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
+.|.+...++||++.+|.+.|-+.|++|...+.-+.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~ 132 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQP 132 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeec
Confidence 5667889999999999999999999999888776654
No 104
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=76.47 E-value=11 Score=26.62 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEe--eCCeEEEEEEE
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIAT--LEGRMKNIFVM 203 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist--~~g~v~~vf~v 203 (269)
++||.|.+|+..+..-|..|.+.++.. .++...-++.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v 40 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV 40 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE
Confidence 479999999999999999999998886 55555444444
No 105
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=75.22 E-value=17 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=29.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
+.+..+++||.|.+|...+..-|..|.+.++...
T Consensus 5 isi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~t 38 (76)
T PRK06737 5 FSLVIHNDPSVLLRISGIFARRGYYISSLNLNER 38 (76)
T ss_pred EEEEEecCCCHHHHHHHHHhccCcceEEEEeccc
Confidence 5677889999999999999999999998888743
No 106
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=75.02 E-value=21 Score=25.14 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHH
Q 024326 167 KPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 228 (269)
Q Consensus 167 r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL 228 (269)
.+|++.+++++|.+.++++.-...+..+-.+ +|.+.. ...+...+.||++|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~i--s~~V~~---------~~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDV--QFVVDR---------DDYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEE--EEEEEH---------HHHHHHHHHHHHHH
Confidence 5789999999999999999766555543333 244432 22345677777765
No 107
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=74.60 E-value=17 Score=37.89 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=39.6
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASC 206 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~ 206 (269)
+.+++++|+|.++..+|--+++.|.+|++.+ +|.....|.|..-
T Consensus 552 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~ 595 (693)
T PRK00227 552 IWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRAN 595 (693)
T ss_pred EecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecC
Confidence 4569999999999999999999999999999 8888889998753
No 108
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=74.55 E-value=4.2 Score=42.24 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=39.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
.++|...+|+|+|..|+.+|. +|..+.++|.|..+.++|.+.
T Consensus 633 ~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 633 ILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred EEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 467889999999999999999 999999999999999999996
No 109
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=74.27 E-value=26 Score=24.23 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHhcCCeEE
Q 024326 166 YKPGLLSDLRRVLEALHLSIV 186 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~ 186 (269)
..+|++.+++++|.+.++.+.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE
Confidence 479999999999999999996
No 110
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=73.17 E-value=18 Score=27.46 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=30.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCC
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG 195 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g 195 (269)
+++.-+++||.|.+|...|...|..|.+.++....+
T Consensus 5 isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~ 40 (84)
T PRK13562 5 LKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQ 40 (84)
T ss_pred EEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCC
Confidence 557788999999999999999999999988875443
No 111
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=69.97 E-value=27 Score=25.87 Aligned_cols=35 Identities=11% Similarity=0.326 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
.+++.-.++||.|.+|+..+..-|..|.+.++...
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t 39 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQN 39 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeec
Confidence 35566788999999999999999999999988753
No 112
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=69.18 E-value=83 Score=35.86 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=53.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE---eeCC--eEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHH
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA---TLEG--RMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 231 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is---t~~g--~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v 231 (269)
.++++|....++..|++|+-.|+++||.|+...-. ..++ ..++-|.+....... .....+...+.++|..+
T Consensus 489 ~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~----~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 489 RLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDA----LDLDDIRERFEEAFEAV 564 (1528)
T ss_pred eEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCcc----ccHHHHHHHHHHHHHHH
Confidence 46677888888999999999999999999987643 3233 345666665443221 23446677888888887
Q ss_pred Hhhcccc
Q 024326 232 LDKFSAT 238 (269)
Q Consensus 232 ~~k~~~~ 238 (269)
..+..-+
T Consensus 565 ~~g~~e~ 571 (1528)
T PF05088_consen 565 WNGRAEN 571 (1528)
T ss_pred hcCCCCC
Confidence 6554433
No 113
>PRK11899 prephenate dehydratase; Provisional
Probab=68.16 E-value=42 Score=30.90 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=37.2
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCC-eEEEEEEEeeec
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-RMKNIFVMASCK 207 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g-~v~~vf~v~~~k 207 (269)
+..+++||.|.+++.++...|+..+..++-...+ .--|+|++....
T Consensus 199 ~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg 245 (279)
T PRK11899 199 FRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG 245 (279)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC
Confidence 3447899999999999999999999999876644 456788886543
No 114
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.03 E-value=47 Score=26.45 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=34.6
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMAS 205 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~ 205 (269)
+..+++||.|.+++..+...|+.+++.+.-...+. --|.|+|..
T Consensus 46 fsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 46 FSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 44477999999999999999999999998765333 345677754
No 115
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.29 E-value=37 Score=23.11 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
.++|.+.+++++|.+.++++.-...++.+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 46899999999999999999666544433
No 116
>PRK06382 threonine dehydratase; Provisional
Probab=67.06 E-value=38 Score=32.63 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=31.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 191 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is 191 (269)
..+++.|.-+++||.|.+|++.|.+.+.+|++....
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 356777889999999999999999999999887764
No 117
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=65.79 E-value=36 Score=35.45 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=40.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEE
Q 024326 155 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIF 201 (269)
Q Consensus 155 ~~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf 201 (269)
.+.+.|.|...+++|+|.+|+++|-+.+..|.++++.+.++.+..+.
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~ 671 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ 671 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence 46778889999999999999999999999999999988766654433
No 118
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.95 E-value=18 Score=26.97 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=30.5
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE--eeCCeE
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGRM 197 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~is--t~~g~v 197 (269)
+++-..||-.+.|+.-||..|+.-|.+|.|. ..+++-
T Consensus 4 ElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~ 42 (77)
T cd04898 4 ELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQ 42 (77)
T ss_pred cccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCee
Confidence 3556678999999999999999999999996 445554
No 119
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=61.84 E-value=66 Score=30.44 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=31.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 191 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is 191 (269)
..+++.+.-+++||.|.++++.+.+.+.+|++....
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 345677888999999999999999999999988655
No 120
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=61.54 E-value=1.5 Score=44.90 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=51.3
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC-----CccchhhHHHHHHHHHHHHHHHHHHHhccC
Q 024326 73 AALKNHIEAERNRRKRINGHLDTLRSLIPGA-----TKMDKATLLTEVISQLKELDKNAMEATEGF 133 (269)
Q Consensus 73 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dk~sil~~ai~yik~L~~~~~~l~~~~ 133 (269)
.....|+.+|.+||.+|.-.+..|.++.-+. .|+.++.-++.++.||..++.+...+.++.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 4568999999999999999999999998654 566777779999999999998877776553
No 121
>PRK08198 threonine dehydratase; Provisional
Probab=60.90 E-value=77 Score=30.30 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=31.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
..+++.+.=+++||.|.++++.|.+.|..|...+...
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 3456667789999999999999999999998887653
No 122
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=56.02 E-value=61 Score=25.20 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=31.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCC
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG 195 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g 195 (269)
.+++.-+++||+|.+|...+..-|..|.+.++...+.
T Consensus 10 tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~ 46 (96)
T PRK08178 10 ILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQD 46 (96)
T ss_pred EEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCC
Confidence 4567789999999999999999999998888764433
No 123
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.63 E-value=61 Score=21.79 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
..++.+.+++.+|.+.++.+.-...+.
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 468999999999999999997665433
No 124
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.09 E-value=64 Score=21.61 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
+.++.+.+++++|.+.++.+.-...+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 468999999999999999986555433
No 125
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=53.13 E-value=9.2 Score=32.28 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCC--CccchhhHHHHHHHHHHHHHH
Q 024326 81 AERNRRKRINGHLDTLRSLIPGA--TKMDKATLLTEVISQLKELDK 124 (269)
Q Consensus 81 ~Er~RR~~in~~~~~LrslvP~~--~k~dk~sil~~ai~yik~L~~ 124 (269)
.|+.|-.++|+.+.-|+.|+|+. .++.+.--|.-+-+||..|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 58888899999999999999976 233222224444455544433
No 126
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=52.33 E-value=79 Score=22.11 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=25.0
Q ss_pred EEEEEEcC----CCCCHHHHHHHHHHhcCCeEEEEE
Q 024326 158 IKASLCCN----YKPGLLSDLRRVLEALHLSIVKAE 189 (269)
Q Consensus 158 V~I~I~c~----~r~glL~~Il~aLe~LgL~V~~a~ 189 (269)
..|+|..+ +.+|++.+++.+|.+.|+.|....
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 34555555 479999999999999999998766
No 127
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=51.78 E-value=55 Score=26.69 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeE
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRM 197 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v 197 (269)
.|++.-+++||-|..++.+|.+.|+.|.-.++.-.+++-
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFG 43 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFG 43 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcc
Confidence 467889999999999999999999999998888777653
No 128
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=50.32 E-value=69 Score=20.85 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
..++.+.+++++|.+.++.+.....+.
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 568899999999999999997765533
No 129
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=49.01 E-value=1e+02 Score=28.55 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=36.0
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCC-eEEEEEEEeee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-RMKNIFVMASC 206 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g-~v~~vf~v~~~ 206 (269)
+.-+++||.|.++|..|...|++....++-...+ ---|.|++...
T Consensus 199 f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e 244 (279)
T COG0077 199 FSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE 244 (279)
T ss_pred EEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe
Confidence 4456899999999999999999999999875554 34667888643
No 130
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=48.15 E-value=1.3e+02 Score=28.92 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=35.7
Q ss_pred cCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEeee
Q 024326 164 CNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMASC 206 (269)
Q Consensus 164 c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~~ 206 (269)
-+++||.|.+++..|...|+......+-...+. --|.|++...
T Consensus 304 ~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e 347 (386)
T PRK10622 304 TGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ 347 (386)
T ss_pred cCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe
Confidence 468999999999999999999999998755444 5677888654
No 131
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=46.86 E-value=72 Score=21.48 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEE
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAE 189 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ 189 (269)
..+|...+|+++|.+.+++|....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999998774
No 132
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=45.86 E-value=23 Score=21.90 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHhHHHHHh
Q 024326 79 IEAERNRRKRINGHLDTLRS 98 (269)
Q Consensus 79 ~~~Er~RR~~in~~~~~Lrs 98 (269)
...=|+||+.++.++..||.
T Consensus 10 keqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 10 KEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34457888999999999985
No 133
>PLN02317 arogenate dehydratase
Probab=45.17 E-value=1.3e+02 Score=29.14 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=28.3
Q ss_pred cCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe
Q 024326 164 CNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR 196 (269)
Q Consensus 164 c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~ 196 (269)
-++++|.|.++|.+|...++.+.+.+.-...+.
T Consensus 290 l~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~ 322 (382)
T PLN02317 290 LEEGPGVLFKALAVFALRDINLTKIESRPQRKR 322 (382)
T ss_pred cCCCCchHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence 367899999999999999999999998765444
No 134
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.35 E-value=1.2e+02 Score=21.89 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.4
Q ss_pred cCCCCCHHHHHHHHHHhcCCeEEEEE
Q 024326 164 CNYKPGLLSDLRRVLEALHLSIVKAE 189 (269)
Q Consensus 164 c~~r~glL~~Il~aLe~LgL~V~~a~ 189 (269)
.+..+|++.+|+++|.+.++.|-...
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~ 36 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS 36 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 34568999999999999999988774
No 135
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.33 E-value=1e+02 Score=21.21 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHH
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIR 229 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~ 229 (269)
..+|++.+++++|.+.++.+... ++.+-.+ +|++.. ...+..++.||++|.
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~--~~s~~~i--s~vv~~---------~d~~~av~~LH~~f~ 62 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQ--AANDLNL--TFVVDE---------DQADGLCARLHFQLI 62 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEE--eCCCCeE--EEEEeH---------HHHHHHHHHHHHHHh
Confidence 46899999999999887766433 2323222 244432 223456777777653
No 136
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=43.91 E-value=27 Score=30.11 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=41.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
+.|+.-..++||+.-.|.++.-+.|-.++.+.++.+|+.+.-++.+.
T Consensus 6 LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis 52 (176)
T COG2716 6 LVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS 52 (176)
T ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe
Confidence 45667789999999999999999999999999999999886666664
No 137
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=43.32 E-value=94 Score=25.37 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeE
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSI 185 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V 185 (269)
+.-+++||-|+.|+++|-..++.+
T Consensus 74 VEmeD~PG~l~~I~~vl~d~diNl 97 (142)
T COG4747 74 VEMEDVPGGLSRIAEVLGDADINL 97 (142)
T ss_pred EEecCCCCcHHHHHHHHhhcCcCc
Confidence 668999999999999999877654
No 138
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=42.51 E-value=7.4 Score=40.15 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=46.3
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhcCCC-----CccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024326 75 LKNHIEAERNRRKRINGHLDTLRSLIPGA-----TKMDKATLLTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 75 ~~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dk~sil~~ai~yik~L~~~~~~l~~~ 132 (269)
...|+.++|++|..+-++|..|-.|.|.. .+..+++||. +.|+.+++.-+.+.+.
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~ 847 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEK 847 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhh
Confidence 36789999999999999999999999953 6778999999 8888888877766553
No 139
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.48 E-value=1.2e+02 Score=21.22 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHhhcCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 024326 78 HIEAERNRRKRINGHLDTLRSLIPGATKMDKATLLTEVISQLKELDKNAMEAT 130 (269)
Q Consensus 78 h~~~Er~RR~~in~~~~~LrslvP~~~k~dk~sil~~ai~yik~L~~~~~~l~ 130 (269)
....=|..|=....++..+..++- ..+ .++|.+||+++-+.++...
T Consensus 12 ~~~~lR~~RHD~~NhLqvI~gllq-lg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 12 LIDSLRAQRHDFLNHLQVIYGLLQ-LGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-CCC------HHHHHHHHHHHHHHHHHHH
Confidence 334446677778888999999883 223 4678999999998887764
No 140
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.91 E-value=1.6e+02 Score=21.69 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred cCCCCCHHHHHHHHHHhcCCeEEEEE
Q 024326 164 CNYKPGLLSDLRRVLEALHLSIVKAE 189 (269)
Q Consensus 164 c~~r~glL~~Il~aLe~LgL~V~~a~ 189 (269)
.+..+|.+.+|+++|.+.|+.|-...
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 35578999999999999999988764
No 141
>PRK11898 prephenate dehydratase; Provisional
Probab=38.70 E-value=2e+02 Score=26.37 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=34.7
Q ss_pred EEcCC-CCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEeee
Q 024326 162 LCCNY-KPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMASC 206 (269)
Q Consensus 162 I~c~~-r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~~ 206 (269)
+..++ ++|.|.+++..+...|+.+++.++-...+. --+.|++...
T Consensus 201 f~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e 247 (283)
T PRK11898 201 LTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE 247 (283)
T ss_pred EEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE
Confidence 44544 599999999999999999999998865443 3466777643
No 142
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=38.47 E-value=1.4e+02 Score=21.15 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHhcCCeEEEEE
Q 024326 165 NYKPGLLSDLRRVLEALHLSIVKAE 189 (269)
Q Consensus 165 ~~r~glL~~Il~aLe~LgL~V~~a~ 189 (269)
...+|++.+++++|.+.++.+....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 4568999999999999999997664
No 143
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.28 E-value=1.6e+02 Score=21.57 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=23.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 160 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 160 I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
+.+.=+++||-|.+++++|- +..|.......
T Consensus 4 l~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~ 34 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIG--PRNITEFNYRY 34 (85)
T ss_pred EEEecCCCCcHHHHHHHHhC--CCceeEEEEEc
Confidence 34567899999999999999 66766555543
No 144
>PRK08526 threonine dehydratase; Provisional
Probab=38.00 E-value=2.5e+02 Score=27.16 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=32.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 193 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~ 193 (269)
..+++.+.-+++||-|.++++.+-+.+.+|+..+....
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~ 362 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRF 362 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEec
Confidence 35666788899999999999999999999998887543
No 145
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=35.63 E-value=56 Score=32.60 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
+++|.|.+|-|+..+|++.|-..++++...+|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 567889999999999999999999999999986653
No 146
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=35.43 E-value=1.7e+02 Score=21.04 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHhcCCeEEEEEE
Q 024326 167 KPGLLSDLRRVLEALHLSIVKAEI 190 (269)
Q Consensus 167 r~glL~~Il~aLe~LgL~V~~a~i 190 (269)
.+|.+.+|+++|.+.++.|-....
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEe
Confidence 589999999999999999887643
No 147
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=34.30 E-value=1.2e+02 Score=19.07 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHhcCCeEEEEEEE
Q 024326 167 KPGLLSDLRRVLEALHLSIVKAEIA 191 (269)
Q Consensus 167 r~glL~~Il~aLe~LgL~V~~a~is 191 (269)
.+|.+.+++++|.+.++.+.....+
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998766443
No 148
>PRK14637 hypothetical protein; Provisional
Probab=34.15 E-value=2.7e+02 Score=23.22 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEeeecccccchhhhHHHHHHHHHHHH
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMASCKELNFENTEVCQSLVSSVHQAI 228 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL 228 (269)
+.-|....+-.+++++|+++...++...++. ++-+|+ .+.++ .+-..++.+.+.|..+|
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I---D~~~g-V~iddC~~vSr~Is~~L 65 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI---YSAGG-VGLDDCARVHRILVPRL 65 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE---ECCCC-CCHHHHHHHHHHHHHHh
Confidence 3457788888899999999999999876664 433333 34333 33344455555555544
No 149
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=30.47 E-value=1.9e+02 Score=20.24 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHH
Q 024326 165 NYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 232 (269)
Q Consensus 165 ~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~ 232 (269)
...++.+.+++++|.+.++.+.-.+.++.+.. .+|.+... ..+.....+++.|..-+
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~--isf~v~~~---------d~~~~~~~l~~~~~~~~ 68 (80)
T cd04921 12 VGVPGIAARIFSALARAGINVILISQASSEHS--ISFVVDES---------DADKALEALEEEFALEI 68 (80)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEecCCcce--EEEEEeHH---------HHHHHHHHHHHHHHhhh
Confidence 34688999999999999999976655433322 23445321 12234556777664443
No 150
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.69 E-value=2.1e+02 Score=21.18 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEE
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKA 188 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a 188 (269)
...|.+.++++.|+++|+.+-+.
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeee
Confidence 45799999999999999999875
No 151
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.41 E-value=1.7e+02 Score=19.14 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEE
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAE 189 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ 189 (269)
..++.+.+++++|.+.++.+...+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE
Confidence 458999999999999999987665
No 152
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=29.01 E-value=3.8e+02 Score=26.69 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=34.4
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeE-E-EEEEEee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRM-K-NIFVMAS 205 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v-~-~vf~v~~ 205 (269)
+.-++++|-|.+++..+...|+.+++.+.-...+.. - +.|+|..
T Consensus 36 FsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 36 FSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred EECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 445778999999999999999999999987654443 2 4566753
No 153
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=28.70 E-value=2.4e+02 Score=26.77 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHH
Q 024326 165 NYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 228 (269)
Q Consensus 165 ~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL 228 (269)
.+.+|.+.+++++|.+.|+.|.. +++.+..+ +|++.. ...+...+.||+.+
T Consensus 348 ~~~~g~~a~i~~~L~~~gIni~~--i~~s~~~i--s~vv~~---------~d~~~av~~Lh~~f 398 (401)
T TIGR00656 348 VGAPGVASEIFSALEEKNINILM--IGSSETNI--SFLVDE---------KDAEKAVRKLHEVF 398 (401)
T ss_pred ccCccHHHHHHHHHHHCCCcEEE--EEcCCCEE--EEEEeH---------HHHHHHHHHHHHHH
Confidence 35799999999999999999984 44444443 244421 12335566666655
No 154
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=28.36 E-value=1.9e+02 Score=21.57 Aligned_cols=14 Identities=7% Similarity=0.337 Sum_probs=9.7
Q ss_pred eeEEEEEEcCCCCC
Q 024326 156 YSIKASLCCNYKPG 169 (269)
Q Consensus 156 ~~V~I~I~c~~r~g 169 (269)
+.|...|+|+=..|
T Consensus 62 f~v~~~I~y~L~~G 75 (76)
T PF07334_consen 62 FQVTLQIPYELQGG 75 (76)
T ss_pred EEeecceeeeCCCC
Confidence 56677788875544
No 155
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=27.69 E-value=85 Score=27.09 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEE
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI 190 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~i 190 (269)
-|.+.+...+|||++-++.+.|..+|+.|.+...
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~ 125 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVS 125 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhcee
Confidence 4556677999999999999999999998865544
No 156
>PRK08210 aspartate kinase I; Reviewed
Probab=26.08 E-value=2.6e+02 Score=26.71 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLEGR 196 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~g~ 196 (269)
+.+|.+.+++++|.+.++.|.. +++.+..
T Consensus 351 ~~~g~~~~i~~aL~~~~I~i~~--~~~s~~~ 379 (403)
T PRK08210 351 GVPGVMAKIVTALSEEGIEILQ--SADSHTT 379 (403)
T ss_pred CCccHHHHHHHHHHhCCCCEEE--EecCCCE
Confidence 5789999999999999999974 4444433
No 157
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=24.49 E-value=3.2e+02 Score=20.72 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=44.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhcc
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFS 236 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~--~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~~ 236 (269)
.+.+....+|+.|-+++++.+--|+.|-..++++. .|+.---+++. ... ....|...|.++.+-.+
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~--s~R----------~~~lL~~QLeKl~Dv~~ 72 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD--SDR----------SVDLLTSQLEKLYDVAH 72 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc--CCC----------ChHHHHHHHHHHcccee
Confidence 44566788999999999999999999999999876 55543233332 221 13445556666665433
No 158
>PRK06545 prephenate dehydrogenase; Validated
Probab=23.39 E-value=2.4e+02 Score=26.56 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR 196 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~ 196 (269)
..+.+.-+++||.+.+|+..|-+.|+.|.+..|.-.-+.
T Consensus 291 ~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~ 329 (359)
T PRK06545 291 YDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARED 329 (359)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCC
Confidence 334455689999999999999999999999888644433
No 159
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=22.91 E-value=2.3e+02 Score=18.45 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEE
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAE 189 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ 189 (269)
..++.+.+++++|.+.++.+.-.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEE
Confidence 458999999999999999997665
No 160
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=22.54 E-value=7e+02 Score=24.00 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=28.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 191 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is 191 (269)
.+++.+.=+++||-|.++++.+-..+.+|.+.+.-
T Consensus 325 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 325 KHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 45666778999999999999777777788877665
No 161
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=22.01 E-value=4.3e+02 Score=26.15 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=33.9
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMAS 205 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~ 205 (269)
+.-++++|-|.+++..+...|+.+++.++-...+. --+.|.|..
T Consensus 21 FsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 21 FSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 34477899999999999999999999998654332 345677754
No 162
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=21.37 E-value=6.8e+02 Score=24.93 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=33.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEee
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMAS 205 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~ 205 (269)
.++.+.+.=|++||-|.+++++|-. .+|+..+.-..+.....+|+...
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie 371 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ 371 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE
Confidence 3556667789999999999999986 46666666544444444555443
No 163
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=21.34 E-value=1.4e+02 Score=25.44 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
+.+.|.-+++||.|.++++-|-+.|..|++.--+.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r 40 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSR 40 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeec
Confidence 44556678999999999999999999998775553
No 164
>PRK08639 threonine dehydratase; Validated
Probab=20.45 E-value=7.4e+02 Score=23.86 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=27.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 191 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is 191 (269)
..+++.+.=+++||-|.++++.+-..+.+|+..+.-
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 356667788999999999999666666688876654
No 165
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.07 E-value=3.4e+02 Score=19.46 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=22.5
Q ss_pred cCCCCCHHHHHHHHHHhcCCeEEEEE
Q 024326 164 CNYKPGLLSDLRRVLEALHLSIVKAE 189 (269)
Q Consensus 164 c~~r~glL~~Il~aLe~LgL~V~~a~ 189 (269)
.+..+|.+.+|+++|.+.++.|-...
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 45679999999999999999988764
Done!