Query 024326
Match_columns 269
No_of_seqs 261 out of 1217
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 8.5E-17 2.9E-21 120.6 7.8 60 73-132 5-65 (82)
2 4h10_B Circadian locomoter out 99.6 6.2E-16 2.1E-20 112.4 7.8 59 72-130 6-65 (71)
3 1hlo_A Protein (transcription 99.6 5.1E-15 1.7E-19 110.3 7.2 61 72-132 10-72 (80)
4 1a0a_A BHLH, protein (phosphat 99.6 3.9E-16 1.3E-20 111.3 0.8 52 75-126 3-61 (63)
5 4ati_A MITF, microphthalmia-as 99.6 4.8E-15 1.6E-19 118.3 7.1 58 75-132 28-89 (118)
6 1an4_A Protein (upstream stimu 99.6 5.3E-16 1.8E-20 111.2 1.1 52 75-126 6-63 (65)
7 1nkp_B MAX protein, MYC proto- 99.6 6.9E-15 2.4E-19 110.3 7.3 59 74-132 2-62 (83)
8 4h10_A ARYL hydrocarbon recept 99.5 3.1E-15 1.1E-19 109.5 4.5 53 72-124 7-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 1.2E-14 4E-19 110.3 7.0 60 72-131 4-66 (88)
10 3u5v_A Protein MAX, transcript 99.5 4.9E-14 1.7E-18 103.9 5.0 58 74-131 5-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.5 1.5E-13 5.1E-18 102.3 7.5 58 75-132 2-62 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.3 4.1E-12 1.4E-16 91.6 5.6 56 71-126 9-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 1.2E-11 4.2E-16 87.1 6.2 53 75-127 3-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 1.8E-10 6.2E-15 107.0 5.5 53 74-126 12-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 6.7E-10 2.3E-14 104.3 6.3 53 73-125 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.8 7.4E-10 2.5E-14 79.2 0.4 46 79-124 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.8 8.8E-09 3E-13 76.4 5.7 46 86-131 4-53 (83)
18 4aya_A DNA-binding protein inh 98.3 1.1E-06 3.8E-11 67.0 6.3 50 81-130 32-84 (97)
19 1zpv_A ACT domain protein; str 97.0 0.013 4.4E-07 42.7 11.3 47 157-203 5-51 (91)
20 1u8s_A Glycine cleavage system 96.7 0.015 5E-07 48.7 10.8 47 158-204 7-53 (192)
21 2ko1_A CTR148A, GTP pyrophosph 96.3 0.03 1E-06 40.2 9.1 48 156-203 4-51 (88)
22 2nyi_A Unknown protein; protei 96.1 0.02 7E-07 48.2 8.3 48 157-204 5-52 (195)
23 2nyi_A Unknown protein; protei 95.5 0.069 2.3E-06 44.9 9.1 38 157-194 93-130 (195)
24 1u8s_A Glycine cleavage system 94.3 0.25 8.6E-06 41.0 9.5 39 156-194 92-130 (192)
25 3o1l_A Formyltetrahydrofolate 94.2 0.26 8.7E-06 44.7 9.9 91 158-261 23-115 (302)
26 3obi_A Formyltetrahydrofolate 94.1 0.26 9E-06 44.2 9.7 91 158-261 7-99 (288)
27 3n0v_A Formyltetrahydrofolate 94.0 0.41 1.4E-05 42.9 10.8 90 158-261 9-100 (286)
28 3lou_A Formyltetrahydrofolate 92.9 0.6 2.1E-05 41.9 10.0 91 158-261 11-105 (292)
29 3nrb_A Formyltetrahydrofolate 92.2 0.74 2.5E-05 41.2 9.6 89 158-261 8-98 (287)
30 3p96_A Phosphoserine phosphata 91.6 1.1 3.9E-05 41.2 10.5 72 157-237 12-83 (415)
31 2f1f_A Acetolactate synthase i 90.6 0.76 2.6E-05 37.8 7.4 46 159-204 5-52 (164)
32 2jhe_A Transcription regulator 90.4 0.64 2.2E-05 37.0 6.7 37 159-196 2-38 (190)
33 2pc6_A Probable acetolactate s 90.1 1 3.4E-05 37.2 7.7 46 159-204 6-53 (165)
34 1y7p_A Hypothetical protein AF 87.1 1.4 4.6E-05 38.2 6.7 38 157-194 4-41 (223)
35 2fgc_A Acetolactate synthase, 84.7 3.1 0.00011 35.1 7.7 47 158-204 30-78 (193)
36 2f06_A Conserved hypothetical 70.0 18 0.00061 27.9 7.7 37 161-197 76-112 (144)
37 2qmx_A Prephenate dehydratase; 63.0 28 0.00095 30.9 8.3 44 163-206 206-250 (283)
38 3luy_A Probable chorismate mut 61.4 60 0.0021 29.3 10.4 59 166-234 217-276 (329)
39 3mwb_A Prephenate dehydratase; 61.1 31 0.0011 31.0 8.4 44 162-205 206-251 (313)
40 2re1_A Aspartokinase, alpha an 57.0 45 0.0015 26.5 8.0 37 159-197 105-144 (167)
41 2f06_A Conserved hypothetical 56.8 40 0.0014 25.8 7.4 35 158-192 7-41 (144)
42 2qmw_A PDT, prephenate dehydra 44.9 76 0.0026 27.8 8.0 42 165-206 197-239 (267)
43 2dt9_A Aspartokinase; protein- 35.8 1.2E+02 0.004 23.9 7.2 23 166-188 107-129 (167)
44 2dt9_A Aspartokinase; protein- 35.5 1.3E+02 0.0046 23.5 7.5 26 165-190 25-50 (167)
45 1xkm_B Distinctin chain B; por 35.0 45 0.0016 18.3 3.0 19 110-128 4-22 (26)
46 2dtj_A Aspartokinase; protein- 33.1 1E+02 0.0034 24.7 6.5 29 164-192 23-51 (178)
47 2wt7_A Proto-oncogene protein 31.6 85 0.0029 21.1 4.8 16 83-98 2-17 (63)
48 2dtj_A Aspartokinase; protein- 31.3 1.3E+02 0.0045 24.0 6.9 29 166-196 107-135 (178)
49 3s1t_A Aspartokinase; ACT doma 30.0 1.1E+02 0.0036 24.8 6.1 50 166-228 108-157 (181)
50 2jqq_A Conserved oligomeric go 29.3 42 0.0014 28.3 3.4 45 86-131 53-97 (204)
51 2re1_A Aspartokinase, alpha an 29.2 84 0.0029 24.8 5.3 46 158-203 26-73 (167)
52 1p3q_Q VPS9P, vacuolar protein 26.0 69 0.0023 21.3 3.4 24 80-103 3-26 (54)
53 3he4_B Synzip5; heterodimeric 26.0 71 0.0024 19.8 3.2 19 112-130 5-23 (46)
54 3m05_A Uncharacterized protein 25.7 2.1E+02 0.0072 21.7 6.7 25 167-191 14-38 (114)
55 1pd7_B MAD1; PAH2, SIN3, eukar 24.2 93 0.0032 17.5 3.1 21 106-126 2-22 (26)
56 3fx7_A Putative uncharacterize 23.5 1.8E+02 0.006 21.5 5.6 21 112-132 65-85 (94)
57 3ab4_A Aspartokinase; aspartat 22.9 1.7E+02 0.0059 26.8 6.8 52 165-229 355-406 (421)
58 1phz_A Protein (phenylalanine 22.7 1.4E+02 0.005 27.9 6.2 44 162-205 39-83 (429)
59 4go7_X Aspartokinase; transfer 21.8 2.5E+02 0.0084 23.2 7.0 46 159-204 37-86 (200)
60 3ab4_A Aspartokinase; aspartat 20.9 2.7E+02 0.0092 25.4 7.7 35 158-192 265-300 (421)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.67 E-value=8.5e-17 Score=120.57 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=56.6
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC-CccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024326 73 AALKNHIEAERNRRKRINGHLDTLRSLIPGA-TKMDKATLLTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 73 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-~k~dk~sil~~ai~yik~L~~~~~~l~~~ 132 (269)
..+.+|+.+||+||++||++|.+|+++||+. .|+||++||.+||+||++|+.+++.|+.+
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e 65 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE 65 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999987 99999999999999999999999999765
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=112.41 Aligned_cols=59 Identities=29% Similarity=0.393 Sum_probs=54.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC-CccchhhHHHHHHHHHHHHHHHHHHHh
Q 024326 72 VAALKNHIEAERNRRKRINGHLDTLRSLIPGA-TKMDKATLLTEVISQLKELDKNAMEAT 130 (269)
Q Consensus 72 ~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-~k~dk~sil~~ai~yik~L~~~~~~l~ 130 (269)
...+.+|+.+||+||++||++|.+|++|||.. .|+||++||++||+||++||+++.=|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44568999999999999999999999999965 799999999999999999999987664
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=5.1e-15 Score=110.30 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=56.4
Q ss_pred hHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC--CccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024326 72 VAALKNHIEAERNRRKRINGHLDTLRSLIPGA--TKMDKATLLTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 72 ~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dk~sil~~ai~yik~L~~~~~~l~~~ 132 (269)
...+.+|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||++|++++++|+.+
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999975 79999999999999999999999999764
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.56 E-value=3.9e-16 Score=111.29 Aligned_cols=52 Identities=33% Similarity=0.457 Sum_probs=47.5
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhcCCC-------CccchhhHHHHHHHHHHHHHHHH
Q 024326 75 LKNHIEAERNRRKRINGHLDTLRSLIPGA-------TKMDKATLLTEVISQLKELDKNA 126 (269)
Q Consensus 75 ~~~h~~~Er~RR~~in~~~~~LrslvP~~-------~k~dk~sil~~ai~yik~L~~~~ 126 (269)
+.+|+.+||+||++||+.|.+|++|||.. .+.+||+||+.||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999954 56779999999999999999865
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.56 E-value=4.8e-15 Score=118.28 Aligned_cols=58 Identities=29% Similarity=0.467 Sum_probs=51.8
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024326 75 LKNHIEAERNRRKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 75 ~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik~L~~~~~~l~~~ 132 (269)
+.+|+.+||+||++||++|.+|++|||.+ .|++|++||.+||+||++||++++.|+++
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999976 47889999999999999999999999764
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=5.3e-16 Score=111.19 Aligned_cols=52 Identities=29% Similarity=0.487 Sum_probs=48.2
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhcCCCC------ccchhhHHHHHHHHHHHHHHHH
Q 024326 75 LKNHIEAERNRRKRINGHLDTLRSLIPGAT------KMDKATLLTEVISQLKELDKNA 126 (269)
Q Consensus 75 ~~~h~~~Er~RR~~in~~~~~LrslvP~~~------k~dk~sil~~ai~yik~L~~~~ 126 (269)
+.+|+.+||+||++||+.|.+|++|||.+. |++|++||.+||+||++||++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999764 7899999999999999999865
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.55 E-value=6.9e-15 Score=110.28 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=54.4
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHhhcCCC--CccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024326 74 ALKNHIEAERNRRKRINGHLDTLRSLIPGA--TKMDKATLLTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 74 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dk~sil~~ai~yik~L~~~~~~l~~~ 132 (269)
.+.+|+..||+||.+||+.|..|+++||.. .|++|++||.+||+||++|+.++++|+.+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e 62 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999974 89999999999999999999999888654
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=3.1e-15 Score=109.54 Aligned_cols=53 Identities=34% Similarity=0.559 Sum_probs=48.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHHHHHH
Q 024326 72 VAALKNHIEAERNRRKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLKELDK 124 (269)
Q Consensus 72 ~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik~L~~ 124 (269)
..++.+|+.+||+||++||+.|.+|++|||.+ .|+||++||+.||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999999965 799999999999999999975
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=1.2e-14 Score=110.26 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=54.5
Q ss_pred hHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC---CccchhhHHHHHHHHHHHHHHHHHHHhc
Q 024326 72 VAALKNHIEAERNRRKRINGHLDTLRSLIPGA---TKMDKATLLTEVISQLKELDKNAMEATE 131 (269)
Q Consensus 72 ~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dk~sil~~ai~yik~L~~~~~~l~~ 131 (269)
...+..|+..||+||..||+.|..|+++||.. .|++|++||.+||+||++|+.+.+.+..
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999975 6999999999999999999999887654
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.45 E-value=4.9e-14 Score=103.92 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=49.7
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHhhcCC---CCcc-chhhHHHHHHHHHHHHHHHHHHHhc
Q 024326 74 ALKNHIEAERNRRKRINGHLDTLRSLIPG---ATKM-DKATLLTEVISQLKELDKNAMEATE 131 (269)
Q Consensus 74 ~~~~h~~~Er~RR~~in~~~~~LrslvP~---~~k~-dk~sil~~ai~yik~L~~~~~~l~~ 131 (269)
.+.+|+..||+||..||+.|.+|+.+||. ..|. +|++||..||+||+.||+++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999994 3555 7999999999999999999999875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.5e-13 Score=102.35 Aligned_cols=58 Identities=28% Similarity=0.437 Sum_probs=53.1
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhcCCC---CccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024326 75 LKNHIEAERNRRKRINGHLDTLRSLIPGA---TKMDKATLLTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 75 ~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dk~sil~~ai~yik~L~~~~~~l~~~ 132 (269)
+..|+..||+||..||+.|..|+++||.. .|++|++||.+|++||++|+.+.++|..+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e 62 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999964 78899999999999999999999887654
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.28 E-value=4.1e-12 Score=91.63 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=50.9
Q ss_pred chHHhhhhhHHHHHHHHHHHHhHHHHHhhcCCC--CccchhhHHHHHHHHHHHHHHHH
Q 024326 71 SVAALKNHIEAERNRRKRINGHLDTLRSLIPGA--TKMDKATLLTEVISQLKELDKNA 126 (269)
Q Consensus 71 ~~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dk~sil~~ai~yik~L~~~~ 126 (269)
....+..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||.+|++.+
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999964 79999999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.23 E-value=1.2e-11 Score=87.06 Aligned_cols=53 Identities=26% Similarity=0.287 Sum_probs=48.8
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhcCCC---CccchhhHHHHHHHHHHHHHHHHH
Q 024326 75 LKNHIEAERNRRKRINGHLDTLRSLIPGA---TKMDKATLLTEVISQLKELDKNAM 127 (269)
Q Consensus 75 ~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dk~sil~~ai~yik~L~~~~~ 127 (269)
+..|+..||+|+..||+.|..||.+||.. .|++|..+|..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999965 689999999999999999998753
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.02 E-value=1.8e-10 Score=107.02 Aligned_cols=53 Identities=30% Similarity=0.471 Sum_probs=43.2
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHhhcC-CCCccchhhHHHHHHHHHHHHHHHH
Q 024326 74 ALKNHIEAERNRRKRINGHLDTLRSLIP-GATKMDKATLLTEVISQLKELDKNA 126 (269)
Q Consensus 74 ~~~~h~~~Er~RR~~in~~~~~LrslvP-~~~k~dk~sil~~ai~yik~L~~~~ 126 (269)
.+.+|+.+||+||++||+.|.+|++||| ...|+||++||..||.|||.|+...
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3478999999999999999999999999 5589999999999999999998753
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.95 E-value=6.7e-10 Score=104.31 Aligned_cols=53 Identities=34% Similarity=0.557 Sum_probs=48.9
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHhhcC----CCCccchhhHHHHHHHHHHHHHHH
Q 024326 73 AALKNHIEAERNRRKRINGHLDTLRSLIP----GATKMDKATLLTEVISQLKELDKN 125 (269)
Q Consensus 73 ~~~~~h~~~Er~RR~~in~~~~~LrslvP----~~~k~dk~sil~~ai~yik~L~~~ 125 (269)
..+.+|+.+||+||++||+.|.+|++||| ...|+||++||..||.|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 34689999999999999999999999999 568999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.79 E-value=7.4e-10 Score=79.19 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHhHHHHHhhcCCC---CccchhhHHHHHHHHHHHHHH
Q 024326 79 IEAERNRRKRINGHLDTLRSLIPGA---TKMDKATLLTEVISQLKELDK 124 (269)
Q Consensus 79 ~~~Er~RR~~in~~~~~LrslvP~~---~k~dk~sil~~ai~yik~L~~ 124 (269)
++.||+|+..||+.|..||.+||.. .|++|..+|.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3678999999999999999999965 789999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.77 E-value=8.8e-09 Score=76.44 Aligned_cols=46 Identities=26% Similarity=0.511 Sum_probs=41.5
Q ss_pred HHHHHHhHHHHHhhcCCC----CccchhhHHHHHHHHHHHHHHHHHHHhc
Q 024326 86 RKRINGHLDTLRSLIPGA----TKMDKATLLTEVISQLKELDKNAMEATE 131 (269)
Q Consensus 86 R~~in~~~~~LrslvP~~----~k~dk~sil~~ai~yik~L~~~~~~l~~ 131 (269)
|..||+++.+|..|||.+ .|.+|++||..||+||++||++.+.+.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 6789999999999999999998877654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.30 E-value=1.1e-06 Score=67.05 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCC---CccchhhHHHHHHHHHHHHHHHHHHHh
Q 024326 81 AERNRRKRINGHLDTLRSLIPGA---TKMDKATLLTEVISQLKELDKNAMEAT 130 (269)
Q Consensus 81 ~Er~RR~~in~~~~~LrslvP~~---~k~dk~sil~~ai~yik~L~~~~~~l~ 130 (269)
.||.|-..+|+.|..||.+||.. .|+.|..+|.-||+||..|++-+++-.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35778889999999999999964 789999999999999999999887643
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.98 E-value=0.013 Score=42.72 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=39.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEE
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVM 203 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v 203 (269)
.+.+.+.|+++||++.+|..+|.+.|..|.+.+..+.++...-.+.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v 51 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV 51 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEE
Confidence 45677899999999999999999999999999998877765444444
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.68 E-value=0.015 Score=48.68 Aligned_cols=47 Identities=13% Similarity=0.332 Sum_probs=40.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
+.|.|.|+++||++.+|..+|.++|++|+.+++.+..|.+.-.+.+.
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~ 53 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 53 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEe
Confidence 45779999999999999999999999999999998888775555553
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.29 E-value=0.03 Score=40.15 Aligned_cols=48 Identities=10% Similarity=0.219 Sum_probs=38.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEE
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVM 203 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v 203 (269)
+.+.+.+.++++||+|.+|..+|.+.|+.|.+.++.+.++....++.+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v 51 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI 51 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEE
Confidence 456777889999999999999999999999999998777633333333
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.08 E-value=0.02 Score=48.21 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=40.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEe
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMA 204 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~ 204 (269)
.+.|.|.|+++||++..|..+|.++|+.|+.+++.+..|.+.-.+.+.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~ 52 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS 52 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE
Confidence 356779999999999999999999999999999998888764455553
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.46 E-value=0.069 Score=44.91 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=34.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
...+.|.|+++||++..|...|-++|+.|..++..+.+
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~ 130 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLP 130 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecc
Confidence 35577899999999999999999999999999998876
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.32 E-value=0.25 Score=40.99 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=35.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 156 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 156 ~~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
....+.+.|+++||++.+|.+.|.+.|++|..+...+.+
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 456678899999999999999999999999999988775
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=94.19 E-value=0.26 Score=44.66 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhc
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 235 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~--~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~ 235 (269)
+.+.+.|++++|+...|...|-+.|..|+.++.... .|+++ +.+.........+ ...|+++|..+-+++
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~Ff--Mr~~~~~~~~~~~-------~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFF--MRHEIRADTLPFD-------LDGFREAFTPIAEEF 93 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEE--EEEEEEGGGSSSC-------HHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEE--EEEEEecCCCCCC-------HHHHHHHHHHHHHHh
Confidence 457799999999999999999999999999988754 45542 2332221110011 355666666655544
Q ss_pred ccchhhhccccCCCCCceeeeccCCC
Q 024326 236 SATEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 236 ~~~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
...-... ...++.|+-+|-|-+
T Consensus 94 ~m~~~l~----~~~~~~ri~vl~Sg~ 115 (302)
T 3o1l_A 94 SMDWRIT----DSAQKKRVVLMASRE 115 (302)
T ss_dssp TCEEEEE----ETTSCCEEEEEECSC
T ss_pred CCeeeec----ccCCCcEEEEEEeCC
Confidence 3322111 134567888776544
No 26
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=94.07 E-value=0.26 Score=44.21 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE--eeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhc
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 235 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is--t~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~ 235 (269)
+.+.+.|++++|+...|...|-++|..|..++.. ...|.++-.+.+.. .....+ ...|+++|..+-+++
T Consensus 7 ~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~~~~~-------~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 7 YVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA--AAKVIP-------LASLRTGFGVIAAKF 77 (288)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE--SSCCCC-------HHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc--CCCCCC-------HHHHHHHHHHHHHHc
Confidence 4577899999999999999999999999998875 33554422222211 110011 355666666665554
Q ss_pred ccchhhhccccCCCCCceeeeccCCC
Q 024326 236 SATEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 236 ~~~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
...-... ...++.|+-+|-|-+
T Consensus 78 ~m~~~l~----~~~~~~ri~vl~Sg~ 99 (288)
T 3obi_A 78 TMGWHMR----DRETRRKVMLLVSQS 99 (288)
T ss_dssp TCEEEEE----ETTSCEEEEEEECSC
T ss_pred CCEEEee----ccCCCcEEEEEEcCC
Confidence 4332211 134567888876543
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.02 E-value=0.41 Score=42.94 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE--eeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhc
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 235 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is--t~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~ 235 (269)
+.+.+.|++++|+...|...|-++|..|..++.. ...|+++ +.+....... .+ ...|+++|..+-++.
T Consensus 9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~-~~-------~~~L~~~f~~la~~l 78 (286)
T 3n0v_A 9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFF--IRVEFRQPDD-FD-------EAGFRAGLAERSEAF 78 (286)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE--EEEEEECCSS-CC-------HHHHHHHHHHHHGGG
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeE--EEEEEecCCC-CC-------HHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999998877 3445442 2222221111 11 356666776665544
Q ss_pred ccchhhhccccCCCCCceeeeccCCC
Q 024326 236 SATEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 236 ~~~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
...-... ...++.|+-+|-|-+
T Consensus 79 ~m~~~l~----~~~~~~ri~vl~Sg~ 100 (286)
T 3n0v_A 79 GMAFELT----APNHRPKVVIMVSKA 100 (286)
T ss_dssp TCEEEEE----CTTCCCEEEEEESSC
T ss_pred CCEEEee----cCCCCcEEEEEEeCC
Confidence 4322211 245567888775543
No 28
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=92.92 E-value=0.6 Score=41.94 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE--eeCCeEEEEEEEeeecc--cccchhhhHHHHHHHHHHHHHHHHh
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGRMKNIFVMASCKE--LNFENTEVCQSLVSSVHQAIRSVLD 233 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is--t~~g~v~~vf~v~~~k~--~~~~~~~~~~~l~~~v~qaL~~v~~ 233 (269)
+.+.+.|++++|+..+|...|-++|+.|..++.. ...|+++ +.+..... ....+ ...|+++|..+-+
T Consensus 11 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~~~~~~-------~~~L~~~f~~la~ 81 (292)
T 3lou_A 11 FVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF--VRCVFHATDDADALR-------VDALRREFEPIAE 81 (292)
T ss_dssp EEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE--EEEEEEECC----CC-------HHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE--EEEEEEccCcccCCC-------HHHHHHHHHHHHH
Confidence 4577899999999999999999999999998887 3455542 22221111 00011 3556666666555
Q ss_pred hcccchhhhccccCCCCCceeeeccCCC
Q 024326 234 KFSATEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 234 k~~~~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
++...-... ...++.|+-+|-|-+
T Consensus 82 ~~~m~~~l~----~~~~~~ri~vl~Sg~ 105 (292)
T 3lou_A 82 RFRMQWAIH----DVAARPKVLIMVSKL 105 (292)
T ss_dssp HHTCEEEEE----ETTSCCEEEEEECSC
T ss_pred hcCcEEEee----ccCCCCEEEEEEcCC
Confidence 444322211 134567888876543
No 29
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=92.20 E-value=0.74 Score=41.24 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=56.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEE--eeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhc
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 235 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~is--t~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~ 235 (269)
+.+.+.|++++|+...|...|-++|..|+.++.. ...|+++ +.+...... .. ...|+++|..+-+++
T Consensus 8 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~--~~-------~~~L~~~f~~la~~~ 76 (287)
T 3nrb_A 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFF--MRVSVEIPV--AG-------VNDFNSAFGKVVEKY 76 (287)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE--EEEEEECCC------------CHHHHHHHHHHGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEE--EEEEEEcCC--CC-------HHHHHHHHHHHHHHc
Confidence 4577899999999999999999999999998875 3355442 222222111 00 236777777665554
Q ss_pred ccchhhhccccCCCCCceeeeccCCC
Q 024326 236 SATEEFLLGARLSNKRRRVSLFDSSL 261 (269)
Q Consensus 236 ~~~~~~~~~~~~~~kr~r~~~~~~~~ 261 (269)
...-... ...++.|+-+|-|-+
T Consensus 77 ~m~~~l~----~~~~~~ri~vl~Sg~ 98 (287)
T 3nrb_A 77 NAEWWFR----PRTDRKKVVIMVSKF 98 (287)
T ss_dssp TCEEEEE----ETTCCCEEEEEECSC
T ss_pred CCeeEee----ccCCCcEEEEEEeCC
Confidence 4432211 234567888876544
No 30
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=91.57 E-value=1.1 Score=41.16 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=50.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhhcc
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFS 236 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k~~ 236 (269)
.+.|++.|++|||+...|...|-++|..|+.++-...+|++.-.+.+.... .. .-...|+.+|..+-.+..
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~-----~~----~~~~~l~~~l~~~~~~~~ 82 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPA-----DV----ADGPALRHDVEAAIRKVG 82 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECH-----HH----HTSHHHHHHHHHHHHHTT
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecC-----Cc----CCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999999999999998888764333332111 00 012456666666655544
Q ss_pred c
Q 024326 237 A 237 (269)
Q Consensus 237 ~ 237 (269)
.
T Consensus 83 ~ 83 (415)
T 3p96_A 83 L 83 (415)
T ss_dssp C
T ss_pred e
Confidence 4
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=90.61 E-value=0.76 Score=37.84 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=36.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEe
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GRMKNIFVMA 204 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~--g~v~~vf~v~ 204 (269)
.+++..+++||+|.+|...|...|..|.+.++.+.. +...-+|.+.
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 456778999999999999999999999999987544 4444444553
No 32
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=90.37 E-value=0.64 Score=37.02 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR 196 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~ 196 (269)
+|.|.|.+|+|+|.+|+++|.+.++++..+++.+. |.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 46688999999999999999999999999999766 44
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=90.14 E-value=1 Score=37.19 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEe
Q 024326 159 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GRMKNIFVMA 204 (269)
Q Consensus 159 ~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~--g~v~~vf~v~ 204 (269)
.+++..+++||.|.+|...|...|..|.+.++.... +...-++.+.
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 466788999999999999999999999999887443 5454445553
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=87.10 E-value=1.4 Score=38.19 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeC
Q 024326 157 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 194 (269)
Q Consensus 157 ~V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~ 194 (269)
.+.+.|.+.+|+|+|.+|+.+|-+.+..|.+.+..+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 35667889999999999999999999999999998764
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=84.69 E-value=3.1 Score=35.13 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=36.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe-eC-CeEEEEEEEe
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LE-GRMKNIFVMA 204 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist-~~-g~v~~vf~v~ 204 (269)
-.+++..+++||.|.+|...|...|+.|.+..+.. -+ +...-++++.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE
Confidence 35667889999999999999999999999988863 33 4444444553
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=70.01 E-value=18 Score=27.93 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=28.1
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeE
Q 024326 161 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGRM 197 (269)
Q Consensus 161 ~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v 197 (269)
.+.-+++||.+.+++++|.+.|+.|...-.+..++..
T Consensus 76 ~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~ 112 (144)
T 2f06_A 76 GISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVA 112 (144)
T ss_dssp EEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEE
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcE
Confidence 3456789999999999999999999664443244544
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=62.96 E-value=28 Score=30.85 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=35.8
Q ss_pred EcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEeee
Q 024326 163 CCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMASC 206 (269)
Q Consensus 163 ~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~~ 206 (269)
.-+++||.|.++|..|...|++..+.++-...+. --|.|++...
T Consensus 206 ~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e 250 (283)
T 2qmx_A 206 ALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI 250 (283)
T ss_dssp EEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE
T ss_pred EcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe
Confidence 3468899999999999999999999999766554 4567888643
No 38
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=61.44 E-value=60 Score=29.32 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeE-EEEEEEeeecccccchhhhHHHHHHHHHHHHHHHHhh
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLEGRM-KNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 234 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v-~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~~v~~k 234 (269)
++||.|.++|..|...|++....++-...+.. -|.|++.. ++...+ ..|++||..+...
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~~d--------~~v~~AL~~L~~~ 276 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAAPWE--------ERFRDALVEIAEH 276 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSCTTS--------HHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCCcCC--------HHHHHHHHHHHHh
Confidence 58999999999999999999999998766654 67788753 233222 3455666665444
No 39
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=61.14 E-value=31 Score=31.01 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=35.1
Q ss_pred EEcC-CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEee
Q 024326 162 LCCN-YKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMAS 205 (269)
Q Consensus 162 I~c~-~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~ 205 (269)
+.-+ ++||.|.++|..|...|++....++-...+. --|.|++..
T Consensus 206 f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 206 VPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp EECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 4454 7999999999999999999999998765443 356688864
No 40
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=57.05 E-value=45 Score=26.51 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=27.3
Q ss_pred EEEEEcCC---CCCHHHHHHHHHHhcCCeEEEEEEEeeCCeE
Q 024326 159 KASLCCNY---KPGLLSDLRRVLEALHLSIVKAEIATLEGRM 197 (269)
Q Consensus 159 ~I~I~c~~---r~glL~~Il~aLe~LgL~V~~a~ist~~g~v 197 (269)
.|.+.... +||.+.+++++|.+.|+.|.... +....+
T Consensus 105 ~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~i 144 (167)
T 2re1_A 105 KVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKV 144 (167)
T ss_dssp EEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEE
T ss_pred EEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEE
Confidence 34455544 79999999999999999998743 444444
No 41
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=56.77 E-value=40 Score=25.82 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 158 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 158 V~I~I~c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
-++++.-+++||.+.+|...|.+.|+.|....+..
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 35667789999999999999999999998776653
No 42
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=44.86 E-value=76 Score=27.76 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEeee
Q 024326 165 NYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMASC 206 (269)
Q Consensus 165 ~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~~ 206 (269)
+++||.|.++|..|...|++..+.++-...+. --|.|++...
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 68999999999999999999999998765543 3566888643
No 43
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=35.82 E-value=1.2e+02 Score=23.89 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEE
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKA 188 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a 188 (269)
..||.+.+++++|.+.|+.|.-.
T Consensus 107 ~~~Gv~a~~f~aL~~~~InI~~i 129 (167)
T 2dt9_A 107 STPEVPAKMFQAVASTGANIEMI 129 (167)
T ss_dssp GSTHHHHHHHHHHHHTTCCCCEE
T ss_pred cCcCHHHHHHHHHHHCCCCEEEE
Confidence 37999999999999999999543
No 44
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=35.48 E-value=1.3e+02 Score=23.54 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHhcCCeEEEEEE
Q 024326 165 NYKPGLLSDLRRVLEALHLSIVKAEI 190 (269)
Q Consensus 165 ~~r~glL~~Il~aLe~LgL~V~~a~i 190 (269)
++++|.+.+|+++|.+.++.|.-...
T Consensus 25 ~~~~G~~a~if~~La~~~InVd~I~q 50 (167)
T 2dt9_A 25 PDQPGIAAKVFQALAERGIAVDMIIQ 50 (167)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCSCEEB
T ss_pred CCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 67899999999999999988765443
No 45
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=35.03 E-value=45 Score=18.31 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 024326 110 TLLTEVISQLKELDKNAME 128 (269)
Q Consensus 110 sil~~ai~yik~L~~~~~~ 128 (269)
+-|-+|-.|+.+|+.+++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5577899999999988764
No 46
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=33.14 E-value=1e+02 Score=24.71 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=22.8
Q ss_pred cCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 164 CNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 164 c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
-++++|.+.+|++.|.+.++.|.-...++
T Consensus 23 ~~~~~G~~a~if~~La~~~InId~i~~s~ 51 (178)
T 2dtj_A 23 ISDKPGEAAKVFRALADAEINIDMVLQNV 51 (178)
T ss_dssp EECSTTHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEEcCC
Confidence 47889999999999999996665544333
No 47
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.61 E-value=85 Score=21.07 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=6.5
Q ss_pred HHHHHHHHHhHHHHHh
Q 024326 83 RNRRKRINGHLDTLRS 98 (269)
Q Consensus 83 r~RR~~in~~~~~Lrs 98 (269)
|++|.+...+..+-++
T Consensus 2 kr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKC 17 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHH
Confidence 3333344444444433
No 48
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=31.32 E-value=1.3e+02 Score=23.99 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLEGR 196 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~g~ 196 (269)
..||.+.+++++|.+.|+.|.-.. +..-.
T Consensus 107 ~~~Gv~arif~aLa~~~InI~~is--tSe~~ 135 (178)
T 2dtj_A 107 SHPGVTAEFMEALRDVNVNIELIS--TSEIR 135 (178)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEE--EETTE
T ss_pred cCccHHHHHHHHHHHCCCCEEEEE--cCCCe
Confidence 578999999999999999997643 44433
No 49
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=30.04 E-value=1.1e+02 Score=24.83 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHH
Q 024326 166 YKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 228 (269)
Q Consensus 166 ~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL 228 (269)
..||.+.+++++|.+.++.|.-.. +.+-.+ ++++.. ...+..++.||+++
T Consensus 108 ~~~Gvaa~~f~aLa~~~InI~~Is--tSei~I--s~vV~~---------~d~~~Av~aLH~~f 157 (181)
T 3s1t_A 108 SHPGVTATFCEALAAVGVNIELIS--TSEIRI--SVLCRD---------TELDKAVVALHEAF 157 (181)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEEG---------GGHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHCCCcEEEEE--cCCCEE--EEEEeH---------HHHHHHHHHHHHHH
Confidence 579999999999999999987665 334443 244432 12234456666665
No 50
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=29.32 E-value=42 Score=28.25 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHhHHHHHhhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhc
Q 024326 86 RKRINGHLDTLRSLIPGATKMDKATLLTEVISQLKELDKNAMEATE 131 (269)
Q Consensus 86 R~~in~~~~~LrslvP~~~k~dk~sil~~ai~yik~L~~~~~~l~~ 131 (269)
|..++.-...|+.|+- ..-.....++.+||+|+|.|-+-...|+.
T Consensus 53 ~~Dl~~F~~QL~qL~~-~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIK-DDISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHH-HSCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777662 22235667899999999999987776654
No 51
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=29.16 E-value=84 Score=24.82 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=29.6
Q ss_pred EEEEEE-cCCCCCHHHHHHHHHHhcCCeEEEEEEE-eeCCeEEEEEEE
Q 024326 158 IKASLC-CNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGRMKNIFVM 203 (269)
Q Consensus 158 V~I~I~-c~~r~glL~~Il~aLe~LgL~V~~a~is-t~~g~v~~vf~v 203 (269)
..|+|. -++++|.+.+|+++|.+.|+.|.....+ +.+|...-+|.+
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 344555 3788999999999999999987655433 223433234555
No 52
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=25.97 E-value=69 Score=21.29 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCC
Q 024326 80 EAERNRRKRINGHLDTLRSLIPGA 103 (269)
Q Consensus 80 ~~Er~RR~~in~~~~~LrslvP~~ 103 (269)
+++|-+|...++-+.+|+.+-|..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 578888999999999999999973
No 53
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.96 E-value=71 Score=19.78 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024326 112 LTEVISQLKELDKNAMEAT 130 (269)
Q Consensus 112 l~~ai~yik~L~~~~~~l~ 130 (269)
+.+--+||++|+++..+|+
T Consensus 5 vkelknyiqeleernaelk 23 (46)
T 3he4_B 5 VKELKNYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 4566789999998887764
No 54
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=25.71 E-value=2.1e+02 Score=21.70 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHhcCCeEEEEEEE
Q 024326 167 KPGLLSDLRRVLEALHLSIVKAEIA 191 (269)
Q Consensus 167 r~glL~~Il~aLe~LgL~V~~a~is 191 (269)
||.-+.++.++|.+.|+..+....+
T Consensus 14 rp~kld~V~~AL~~~G~~~t~v~~~ 38 (114)
T 3m05_A 14 QDKDANYLSDQFIDQNVRATKLSTT 38 (114)
T ss_dssp EHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 5778999999999999998655444
No 55
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=24.19 E-value=93 Score=17.52 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=15.9
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 024326 106 MDKATLLTEVISQLKELDKNA 126 (269)
Q Consensus 106 ~dk~sil~~ai~yik~L~~~~ 126 (269)
++...+|-+|.+|+...+++.
T Consensus 2 ~~nvq~LLeAAeyLErrEre~ 22 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERREREA 22 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 456778899999998776643
No 56
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.54 E-value=1.8e+02 Score=21.50 Aligned_cols=21 Identities=14% Similarity=-0.011 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 024326 112 LTEVISQLKELDKNAMEATEG 132 (269)
Q Consensus 112 l~~ai~yik~L~~~~~~l~~~ 132 (269)
.+.|=+||..|.++++-|++.
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHH
Confidence 457889999999999998864
No 57
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=22.90 E-value=1.7e+02 Score=26.77 Aligned_cols=52 Identities=15% Similarity=0.320 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEeeecccccchhhhHHHHHHHHHHHHH
Q 024326 165 NYKPGLLSDLRRVLEALHLSIVKAEIATLEGRMKNIFVMASCKELNFENTEVCQSLVSSVHQAIR 229 (269)
Q Consensus 165 ~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~v~~vf~v~~~k~~~~~~~~~~~~l~~~v~qaL~ 229 (269)
...||.+.+++++|.+.++.|.-. ++..-.+ ++++.. ...+..++.||+++.
T Consensus 355 ~~~~Gv~a~~f~aL~~~~InI~~i--s~Se~~i--s~vV~~---------~d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 355 KSHPGVTAEFMEALRDVNVNIELI--STSEIRI--SVLIRE---------DDLDAAARALHEQFQ 406 (421)
T ss_dssp TSCTTHHHHHHHHHHHTTCCCCEE--EEETTEE--EEEEEG---------GGHHHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHHHCCCCEEEE--EcCCCeE--EEEEeH---------HHHHHHHHHHHHHHh
Confidence 357999999999999999999743 3445444 234432 123345666676653
No 58
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=22.72 E-value=1.4e+02 Score=27.94 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=34.4
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEee
Q 024326 162 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGR-MKNIFVMAS 205 (269)
Q Consensus 162 I~c~~r~glL~~Il~aLe~LgL~V~~a~ist~~g~-v~~vf~v~~ 205 (269)
+..++++|-|.++|..+...|+++.+.++-...+. --+.|.|..
T Consensus 39 Fsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~ 83 (429)
T 1phz_A 39 FSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL 83 (429)
T ss_dssp EEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred EEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEE
Confidence 33467899999999999999999999988765443 356677753
No 59
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=21.80 E-value=2.5e+02 Score=23.24 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=29.8
Q ss_pred EEEE-EcCCCCCHHHHHHHHHHhcCCeEEEE--EEEee-CCeEEEEEEEe
Q 024326 159 KASL-CCNYKPGLLSDLRRVLEALHLSIVKA--EIATL-EGRMKNIFVMA 204 (269)
Q Consensus 159 ~I~I-~c~~r~glL~~Il~aLe~LgL~V~~a--~ist~-~g~v~~vf~v~ 204 (269)
+|.| ..+++||.+.+|+.+|.+.++.|--. +++.. ++..-.+|.+.
T Consensus 37 ~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 37 KVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred EEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 3443 35889999999999999999876443 33333 33444455553
No 60
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=20.86 E-value=2.7e+02 Score=25.41 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=26.8
Q ss_pred EEEEEE-cCCCCCHHHHHHHHHHhcCCeEEEEEEEe
Q 024326 158 IKASLC-CNYKPGLLSDLRRVLEALHLSIVKAEIAT 192 (269)
Q Consensus 158 V~I~I~-c~~r~glL~~Il~aLe~LgL~V~~a~ist 192 (269)
..|+|. .++++|.+.+|++.|.+.++.|......+
T Consensus 265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~ 300 (421)
T 3ab4_A 265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV 300 (421)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccC
Confidence 345555 47789999999999999999987664333
Done!