BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024329
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1
Length = 350
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 110/160 (68%)
Query: 98 GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
GR+KAL+ G+ Y + L G IND +++ L G+ SD +VILT+++ + R+PT+
Sbjct: 52 GRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTR 111
Query: 158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
N+ AM+WL +D QP DSL HYSGHG + +D + DE DG D+ I P+D ET+GPIIDD
Sbjct: 112 ANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDD 171
Query: 218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
E++ +V+PL +G +L A+ DSC+SGTVLDLP+ G+
Sbjct: 172 EMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGI 211
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T.
Brucei
pdb|4AFV|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Calcium Chloride
Length = 367
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 91 WSPPPVYGRK-KALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEK 149
W P+ G+ +AL G+ Y T+ L+G NDVK M L + G P + VIL +E+
Sbjct: 83 WVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKK-GLPINEAVILVDEDN 141
Query: 150 NPYRI--PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLD 207
P R PT+ NI M WL +D +PGD L FHYSGHG++ K D + +D+ I P+D
Sbjct: 142 FPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRG-DSDEKYDQCIAPVD 200
Query: 208 HETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQ-------MG 260
+ G I+DD+I+ + LP +L A+ D +SG+++DLPF +G + M
Sbjct: 201 FQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCAHSGSIMDLPFTYVCSGGEQASGTPHMK 260
Query: 261 RSKNSNSLL 269
R + N +L
Sbjct: 261 RIREGNDVL 269
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Samarium
Length = 367
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 91 WSPPPVYGRK-KALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEK 149
W P+ G+ +AL G+ Y T+ L+G NDVK M L + G P + VIL +E+
Sbjct: 83 WVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKK-GLPINEAVILVDEDN 141
Query: 150 NPYRI--PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLD 207
P R PT+ NI M WL +D +PGD L FHYSGHG++ K D + +D+ I P+D
Sbjct: 142 FPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRG-DSDEKYDQCIAPVD 200
Query: 208 HETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQ-------MG 260
+ G I+DD+I+ + LP +L A+ D +SG+++DLPF +G + M
Sbjct: 201 FQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASGTPHMK 260
Query: 261 RSKNSNSLL 269
R + N +L
Sbjct: 261 RIREGNDVL 269
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity
And Activation
Length = 367
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 91 WSPPPVYGRK-KALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEK 149
W P+ G+ +AL G+ Y T+ L+G NDVK M L + G P + VIL +E+
Sbjct: 83 WVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKR-GLPINEAVILVDEDN 141
Query: 150 NPYRI--PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLD 207
P R PT+ NI M WL +D +PGD L FHYSGHG++ K D + +D+ I P+D
Sbjct: 142 FPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRG-DSDEKYDQCIAPVD 200
Query: 208 HETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQ-------MG 260
+ G I+DD+I+ + LP +L A+ D +SG+++DLPF +G + M
Sbjct: 201 FQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASGTPHMK 260
Query: 261 RSKNSNSLL 269
R + N +L
Sbjct: 261 RIREGNDVL 269
>pdb|3BIJ|A Chain A, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
pdb|3BIJ|B Chain B, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
pdb|3BIJ|C Chain C, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
Length = 285
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 153 RIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEG 212
+ T+ + A+ A+ GD YSGHG + D + DE DG DET C D G
Sbjct: 53 KAATRAKVIDAIGKAAKALGKGDIFXLSYSGHGGQVPDTSNDEPDGVDETWCLFD----G 108
Query: 213 PIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGRS 262
+IDDE+ A ++ G ++ DSC+SGTV+ + NG RS
Sbjct: 109 ELIDDELYA-LLGKFAAGVRVLVFSDSCHSGTVVKXAY---YNGTTAARS 154
>pdb|4ERV|A Chain A, Crystal Structure Of Human Ryanodine Receptor 3
(2597-2800)
Length = 207
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 144 LTEEEKNPYRIPTKQNIRT--AMRWLAQDCQPGDSLV 178
LTE+EK YR P +++++T A+ W + + G++LV
Sbjct: 67 LTEKEKEIYRWPARESLKTMLAVGWTVERTKEGEALV 103
>pdb|4ETV|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2
(2699-2904)
pdb|4ETV|B Chain B, Crystal Structure Of Mouse Ryanodine Receptor 2
(2699-2904)
Length = 209
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 143 ILTEEEKNPYRIPTKQNIRT--AMRWLAQDCQPGDSLVFH 180
+L+E+EK YR P K++++T A W + + GDS +
Sbjct: 66 LLSEKEKEIYRWPIKESLKTXLAWGWRIERTREGDSXALY 105
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 59 IVPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALL 104
+ P N++ A +G Q N+YY P A + P V G LL
Sbjct: 328 VAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLL 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,005,629
Number of Sequences: 62578
Number of extensions: 388091
Number of successful extensions: 762
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 10
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)