Query 024329
Match_columns 269
No_of_seqs 206 out of 1179
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:21:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f6o_A Metacaspase-1; rossmann 100.0 3.1E-44 1.1E-48 337.7 18.6 165 92-256 46-210 (350)
2 4af8_A Metacaspase MCA2; hydro 100.0 2.1E-40 7.2E-45 313.2 18.0 163 92-256 85-249 (367)
3 3bij_A Uncharacterized protein 100.0 1.7E-33 5.9E-38 257.4 13.8 141 98-253 2-149 (285)
4 3uoa_B Mucosa-associated lymph 99.8 2.8E-20 9.4E-25 177.1 14.8 127 97-246 3-133 (390)
5 2h54_A Caspase-1; allosteric s 99.4 2.3E-12 7.8E-17 110.6 14.7 122 98-245 42-171 (178)
6 2j32_A Caspase-3; Pro-caspase3 99.2 6.3E-11 2.2E-15 106.3 11.5 118 97-244 14-139 (250)
7 3e4c_A Caspase-1; zymogen, inf 99.2 1.3E-10 4.4E-15 107.2 12.5 122 98-245 59-188 (302)
8 1m72_A Caspase-1; caspase, cys 99.2 1.2E-10 4.1E-15 105.8 11.7 119 97-245 30-155 (272)
9 1f1j_A Caspase-7 protease; cas 99.2 1.5E-10 5.1E-15 106.9 11.9 120 96-245 66-193 (305)
10 4ehd_A Caspase-3; caspase, apo 99.1 4.2E-10 1.5E-14 102.5 11.9 119 96-244 41-167 (277)
11 2fp3_A Caspase NC; apoptosis, 99.1 4.3E-10 1.5E-14 104.3 12.1 122 98-244 60-188 (316)
12 2nn3_C Caspase-1; cysteine pro 99.1 2.5E-10 8.6E-15 105.6 10.4 119 97-245 58-183 (310)
13 3od5_A Caspase-6; caspase doma 99.1 7.7E-10 2.6E-14 100.8 13.0 119 96-244 18-144 (278)
14 1nw9_B Caspase 9, apoptosis-re 99.1 1.1E-09 3.8E-14 99.4 13.0 127 96-244 18-152 (277)
15 3sir_A Caspase; hydrolase; 2.6 99.1 1.3E-10 4.3E-15 105.0 6.2 118 97-244 18-142 (259)
16 3h11_B Caspase-8; cell death, 99.0 2.6E-09 8.9E-14 96.9 13.1 120 97-245 15-149 (271)
17 1pyo_A Caspase-2; apoptosis, c 98.8 1.5E-07 5.1E-12 79.8 13.8 120 97-245 31-159 (167)
18 2dko_A Caspase-3; low barrier 98.6 3.3E-07 1.1E-11 76.0 12.4 119 97-245 14-140 (146)
19 1qtn_A Caspase-8; apoptosis, d 98.6 7.1E-07 2.4E-11 75.3 13.0 120 97-245 21-155 (164)
20 2ql9_A Caspase-7; cysteine pro 98.4 3.8E-06 1.3E-10 71.5 11.7 118 97-244 42-167 (173)
21 3p45_A Caspase-6; protease, hu 98.3 1E-05 3.4E-10 69.3 12.3 118 97-244 42-167 (179)
22 3h11_A CAsp8 and FADD-like apo 97.9 3.5E-05 1.2E-09 69.9 8.7 109 97-243 41-155 (272)
23 1gh9_A 8.3 kDa protein (gene M 90.1 0.12 4.3E-06 37.5 1.9 34 3-38 2-35 (71)
24 2apo_B Ribosome biogenesis pro 78.0 1.1 3.6E-05 31.5 2.0 32 1-38 2-33 (60)
25 1pft_A TFIIB, PFTFIIBN; N-term 74.0 2.5 8.6E-05 27.7 2.9 33 1-33 1-34 (50)
26 3j20_W 30S ribosomal protein S 68.0 4.3 0.00015 28.7 3.1 30 4-33 14-44 (63)
27 1qxf_A GR2, 30S ribosomal prot 67.5 3.1 0.00011 29.6 2.3 30 4-33 6-36 (66)
28 2yrc_A Protein transport prote 66.6 5 0.00017 27.8 3.2 36 3-38 7-48 (59)
29 7aat_A Aspartate aminotransfer 65.5 9 0.00031 34.2 5.7 56 117-180 71-129 (401)
30 2ct7_A Ring finger protein 31; 64.5 4.7 0.00016 29.5 3.0 32 5-36 25-56 (86)
31 2aus_D NOP10, ribosome biogene 62.7 3.3 0.00011 29.0 1.7 32 1-38 1-32 (60)
32 3uws_A Hypothetical protein; c 61.6 21 0.00071 28.1 6.5 85 100-189 9-117 (126)
33 3j20_Y 30S ribosomal protein S 60.5 4.4 0.00015 27.1 1.9 27 6-32 20-46 (50)
34 2xzm_6 RPS27E; ribosome, trans 60.2 4.9 0.00017 29.7 2.3 30 4-33 31-61 (81)
35 3ca8_A Protein YDCF; two domai 60.1 18 0.00062 32.0 6.5 44 120-169 96-139 (266)
36 3h0g_L DNA-directed RNA polyme 56.8 5.7 0.0002 28.0 2.1 27 4-31 20-46 (63)
37 3isl_A Purine catabolism prote 56.5 34 0.0012 30.1 7.9 54 121-185 44-97 (416)
38 3n0l_A Serine hydroxymethyltra 56.0 41 0.0014 29.7 8.3 47 126-185 76-122 (417)
39 1cvr_A Gingipain R, RGPB; casp 53.2 40 0.0014 31.9 8.1 75 97-188 140-215 (435)
40 3cai_A Possible aminotransfera 49.4 97 0.0033 27.1 9.7 57 120-185 68-124 (406)
41 3u5c_b RP61, YS20, 40S ribosom 48.7 7.5 0.00026 28.8 1.7 29 4-32 33-62 (82)
42 1svv_A Threonine aldolase; str 48.6 82 0.0028 26.8 8.9 58 118-187 46-103 (359)
43 3efo_B SEC24 related gene fami 47.9 9 0.00031 39.0 2.7 35 4-38 97-135 (770)
44 3ly1_A Putative histidinol-pho 47.8 1.3E+02 0.0045 25.7 10.3 56 120-187 50-105 (354)
45 3euc_A Histidinol-phosphate am 47.6 1.1E+02 0.0038 26.4 9.7 52 123-186 69-121 (367)
46 3eh2_A Protein transport prote 46.5 10 0.00034 38.7 2.8 35 4-38 93-131 (766)
47 1x3l_A Hypothetical protein PH 46.5 41 0.0014 32.1 6.9 36 153-188 99-136 (440)
48 3f9t_A TDC, L-tyrosine decarbo 46.4 92 0.0031 26.8 8.9 59 120-187 68-136 (397)
49 1pcx_A Protein transport prote 46.3 11 0.00037 38.7 3.0 34 5-38 112-149 (810)
50 3iz6_X 40S ribosomal protein S 46.1 8.9 0.0003 28.6 1.7 29 4-32 35-64 (86)
51 4hvk_A Probable cysteine desul 46.0 27 0.00091 30.2 5.2 52 120-180 42-94 (382)
52 1k81_A EIF-2-beta, probable tr 46.0 12 0.00042 23.1 2.2 31 6-36 1-34 (36)
53 2pk7_A Uncharacterized protein 45.5 17 0.00058 25.8 3.1 35 4-38 7-41 (69)
54 1m2v_B SEC24, protein transpor 45.3 11 0.00038 39.2 3.0 34 5-38 228-265 (926)
55 1vq8_Z 50S ribosomal protein L 44.2 8.1 0.00028 28.5 1.3 27 6-32 28-54 (83)
56 2k4x_A 30S ribosomal protein S 44.1 14 0.00047 25.1 2.4 29 4-32 17-45 (55)
57 2jrp_A Putative cytoplasmic pr 43.2 14 0.00049 27.2 2.5 27 4-32 1-27 (81)
58 2js4_A UPF0434 protein BB2007; 43.1 18 0.0006 25.8 2.9 35 4-38 7-41 (70)
59 3eh1_A Protein transport prote 43.1 14 0.00048 37.5 3.3 34 4-38 84-121 (751)
60 1vjo_A Alanine--glyoxylate ami 42.6 76 0.0026 27.7 7.8 54 121-186 67-121 (393)
61 4ayb_P DNA-directed RNA polyme 42.6 12 0.00039 25.0 1.7 25 6-30 4-30 (48)
62 2jr6_A UPF0434 protein NMA0874 42.3 18 0.0006 25.6 2.8 35 4-38 7-41 (68)
63 2hf1_A Tetraacyldisaccharide-1 41.9 16 0.00056 25.8 2.6 34 5-38 8-41 (68)
64 1u08_A Hypothetical aminotrans 41.7 1.7E+02 0.006 25.3 10.6 57 118-186 68-127 (386)
65 1twf_L ABC10-alpha, DNA-direct 41.0 9.5 0.00033 27.3 1.2 26 5-31 28-53 (70)
66 4dq6_A Putative pyridoxal phos 39.6 73 0.0025 27.7 7.1 55 119-185 69-125 (391)
67 2i0x_A Hypothetical protein PF 39.4 99 0.0034 22.3 6.7 52 123-183 14-66 (85)
68 3rq1_A Aminotransferase class 39.2 91 0.0031 27.6 7.9 56 117-184 80-136 (418)
69 3ffh_A Histidinol-phosphate am 39.1 1.4E+02 0.0049 25.6 9.0 52 123-186 69-120 (363)
70 3lvm_A Cysteine desulfurase; s 39.0 50 0.0017 29.3 6.0 55 121-184 68-123 (423)
71 1vk6_A NADH pyrophosphatase; 1 38.8 16 0.00055 32.2 2.6 29 6-34 108-136 (269)
72 4eb5_A Probable cysteine desul 38.4 58 0.002 28.1 6.3 51 121-180 43-94 (382)
73 1o4s_A Aspartate aminotransfer 38.0 1.2E+02 0.0042 26.5 8.5 57 118-186 79-137 (389)
74 2hd9_A UPF0310 protein PH1033; 37.9 18 0.00063 29.0 2.6 18 167-184 31-48 (145)
75 2dr1_A PH1308 protein, 386AA l 37.4 2E+02 0.0067 24.7 9.7 54 120-185 52-106 (386)
76 3zrp_A Serine-pyruvate aminotr 37.2 95 0.0032 26.7 7.4 51 121-184 35-87 (384)
77 3kgw_A Alanine-glyoxylate amin 37.1 1.9E+02 0.0066 24.8 9.5 52 122-184 57-108 (393)
78 3ele_A Amino transferase; RER0 36.9 1.6E+02 0.0056 25.6 9.1 58 117-186 76-136 (398)
79 3piu_A 1-aminocyclopropane-1-c 36.5 1.8E+02 0.0061 25.9 9.5 55 121-187 90-148 (435)
80 1iay_A ACC synthase 2, 1-amino 35.4 2.4E+02 0.008 25.0 10.7 55 121-187 87-145 (428)
81 3nra_A Aspartate aminotransfer 35.0 1.5E+02 0.0051 25.8 8.5 57 118-186 79-138 (407)
82 1j32_A Aspartate aminotransfer 35.0 1.5E+02 0.005 25.8 8.4 56 118-185 68-125 (388)
83 2ch1_A 3-hydroxykynurenine tra 34.8 1.6E+02 0.0054 25.6 8.6 55 121-187 51-106 (396)
84 2zc0_A Alanine glyoxylate tran 34.5 75 0.0026 27.9 6.4 53 120-184 78-132 (407)
85 2zyj_A Alpha-aminodipate amino 34.4 81 0.0028 27.7 6.6 48 125-184 78-125 (397)
86 4b6d_A RAC GTPase-activating p 34.4 27 0.00092 24.0 2.6 31 4-36 18-48 (61)
87 3dzz_A Putative pyridoxal 5'-p 34.3 58 0.002 28.3 5.6 55 120-186 65-121 (391)
88 2r2n_A Kynurenine/alpha-aminoa 34.1 1.3E+02 0.0045 26.8 8.1 51 123-185 84-143 (425)
89 3ijw_A Aminoglycoside N3-acety 33.9 34 0.0012 30.4 3.9 26 155-182 15-40 (268)
90 3aow_A Putative uncharacterize 33.9 1.4E+02 0.0048 27.2 8.4 50 123-184 124-174 (448)
91 2gbs_A Hypothetical protein RP 33.8 26 0.00089 28.5 2.9 19 165-183 37-55 (145)
92 1p91_A Ribosomal RNA large sub 33.7 20 0.00069 30.1 2.3 27 5-33 2-28 (269)
93 3meb_A Aspartate aminotransfer 33.2 2.6E+02 0.0089 25.2 10.1 16 232-247 235-250 (448)
94 1faq_A RAF-1; transferase, ser 33.1 22 0.00075 22.9 2.0 26 4-34 13-38 (52)
95 2jny_A Uncharacterized BCR; st 32.8 31 0.0011 24.3 2.8 35 4-38 9-43 (67)
96 3fdb_A Beta C-S lyase, putativ 32.6 1.6E+02 0.0055 25.3 8.2 53 123-187 64-118 (377)
97 1vp4_A Aminotransferase, putat 32.5 92 0.0031 27.8 6.7 56 118-185 86-144 (425)
98 3sma_A FRBF; N-acetyl transfer 32.1 38 0.0013 30.5 3.9 27 154-182 21-47 (286)
99 2nyg_A YOKD protein; PFAM02522 32.0 38 0.0013 30.1 3.9 26 155-182 13-38 (273)
100 1zce_A Hypothetical protein AT 31.9 28 0.00094 28.7 2.7 19 165-183 38-56 (155)
101 1o58_A O-acetylserine sulfhydr 31.8 1.1E+02 0.0037 26.7 7.0 35 155-189 266-300 (303)
102 2ar1_A Hypothetical protein; s 31.4 31 0.0011 28.8 3.0 19 166-184 54-72 (172)
103 1ve1_A O-acetylserine sulfhydr 31.1 1.2E+02 0.0042 26.3 7.1 36 155-190 262-297 (304)
104 2eve_A Hypothetical protein ps 30.9 33 0.0011 28.3 3.0 18 166-183 36-53 (157)
105 1zpw_X Hypothetical protein TT 30.6 82 0.0028 22.9 5.0 55 121-184 16-71 (90)
106 1wg2_A Zinc finger (AN1-like) 30.2 25 0.00084 24.8 1.9 27 5-36 15-41 (64)
107 1qxf_A GR2, 30S ribosomal prot 30.2 24 0.00081 25.0 1.8 23 2-24 23-45 (66)
108 3get_A Histidinol-phosphate am 30.1 1.3E+02 0.0044 25.9 7.1 49 125-185 69-117 (365)
109 2gmg_A Hypothetical protein PF 30.0 23 0.00078 27.4 1.8 26 5-31 67-92 (105)
110 2avu_E Flagellar transcription 30.0 17 0.00057 31.0 1.1 27 4-30 133-161 (192)
111 2e7j_A SEP-tRNA:Cys-tRNA synth 29.5 2.6E+02 0.009 23.7 9.3 49 123-185 55-104 (371)
112 2z9v_A Aspartate aminotransfer 29.0 2.8E+02 0.0095 23.9 10.3 49 121-181 42-90 (392)
113 3fkd_A L-threonine-O-3-phospha 29.0 2.7E+02 0.0092 23.7 10.2 104 125-246 54-174 (350)
114 2zy4_A L-aspartate beta-decarb 28.9 1.3E+02 0.0045 28.6 7.5 34 211-245 258-293 (546)
115 2x5f_A Aspartate_tyrosine_phen 28.6 1.8E+02 0.0063 25.7 8.1 17 231-247 226-242 (430)
116 1eg5_A Aminotransferase; PLP-d 28.4 2.3E+02 0.0079 24.1 8.5 52 121-181 44-96 (384)
117 3cq5_A Histidinol-phosphate am 27.8 2.9E+02 0.01 23.7 9.4 52 123-186 75-128 (369)
118 1wfh_A Zinc finger (AN1-like) 27.7 32 0.0011 24.2 2.1 27 5-36 15-41 (64)
119 1rv3_A Serine hydroxymethyltra 27.5 3.6E+02 0.012 24.7 10.9 52 125-187 94-147 (483)
120 2c0r_A PSAT, phosphoserine ami 27.2 1.3E+02 0.0045 25.9 6.6 48 122-180 50-98 (362)
121 1gd9_A Aspartate aminotransfer 26.7 1.8E+02 0.006 25.3 7.5 57 118-186 64-123 (389)
122 3eop_A Thymocyte nuclear prote 26.5 43 0.0015 28.1 3.0 16 169-184 50-65 (176)
123 1elu_A L-cysteine/L-cystine C- 26.4 2.3E+02 0.008 24.2 8.1 55 121-186 59-113 (390)
124 3gbx_A Serine hydroxymethyltra 26.1 1.4E+02 0.0046 26.2 6.6 48 126-186 81-128 (420)
125 2kdx_A HYPA, hydrogenase/ureas 25.9 21 0.00072 27.4 1.0 26 5-32 73-99 (119)
126 2jmo_A Parkin; IBR, E3 ligase, 25.7 44 0.0015 23.9 2.6 29 4-32 24-59 (80)
127 2jne_A Hypothetical protein YF 25.7 38 0.0013 25.9 2.3 28 4-33 31-58 (101)
128 3op7_A Aminotransferase class 25.4 1.3E+02 0.0045 26.0 6.3 51 124-186 66-117 (375)
129 3tcm_A Alanine aminotransferas 24.7 3.2E+02 0.011 25.2 9.2 58 117-185 134-193 (500)
130 3nnk_A Ureidoglycine-glyoxylat 24.5 1.9E+02 0.0064 25.2 7.2 53 121-184 46-98 (411)
131 3t18_A Aminotransferase class 24.5 1.8E+02 0.0062 25.5 7.2 37 210-247 191-233 (413)
132 2egu_A Cysteine synthase; O-ac 24.4 1.8E+02 0.0062 25.2 7.1 30 161-190 271-300 (308)
133 1dl6_A Transcription factor II 24.4 53 0.0018 22.2 2.7 28 6-33 12-40 (58)
134 3rhz_A GTF3, nucleotide sugar 24.2 1.1E+02 0.0039 27.3 5.7 60 117-182 24-83 (339)
135 3vax_A Putative uncharacterize 24.2 47 0.0016 29.1 3.1 49 122-179 64-114 (400)
136 3h0g_I DNA-directed RNA polyme 23.6 64 0.0022 24.6 3.4 36 1-37 1-40 (113)
137 4es1_A BH0342 protein; ferredo 23.6 1.2E+02 0.0041 22.8 4.8 57 122-187 23-80 (100)
138 2o0r_A RV0858C (N-succinyldiam 23.4 2.2E+02 0.0076 25.0 7.5 57 118-186 63-122 (411)
139 1wfp_A Zinc finger (AN1-like) 23.2 38 0.0013 24.5 1.8 27 5-36 25-51 (74)
140 3f59_A Ankyrin-1; beta sandwic 23.1 31 0.0011 28.6 1.5 23 8-30 22-48 (161)
141 2a20_A Regulating synaptic mem 23.1 16 0.00053 25.5 -0.3 25 7-31 35-59 (62)
142 1yiz_A Kynurenine aminotransfe 23.1 3.8E+02 0.013 23.5 10.7 56 117-184 77-135 (429)
143 1twf_I B12.6, DNA-directed RNA 23.0 56 0.0019 25.3 3.0 33 4-36 3-39 (122)
144 3g7q_A Valine-pyruvate aminotr 22.3 2.3E+02 0.0078 24.7 7.4 32 210-243 192-224 (417)
145 3oq2_A Crispr-associated prote 22.0 1.4E+02 0.0046 22.4 4.9 57 121-186 25-82 (103)
146 4amm_A DYNE8; transferase; 1.4 21.9 1.7E+02 0.0059 26.8 6.6 61 121-191 33-113 (401)
147 2e9h_A EIF-5, eukaryotic trans 21.4 73 0.0025 26.1 3.5 33 6-38 104-141 (157)
148 2p5d_A UPF0310 protein mjecl36 21.4 42 0.0014 26.9 2.0 14 167-180 34-47 (147)
149 4gdk_A Ubiquitin-like protein 20.8 2.5E+02 0.0086 20.5 6.3 54 123-183 32-86 (91)
150 1b5p_A Protein (aspartate amin 20.7 3E+02 0.01 23.9 7.8 56 118-185 69-126 (385)
151 1iug_A Putative aspartate amin 20.7 2.3E+02 0.0078 23.9 6.8 48 121-180 34-81 (352)
152 1xho_A Chorismate mutase; sout 20.6 90 0.0031 25.4 3.7 28 156-183 45-78 (148)
153 3j20_W 30S ribosomal protein S 20.4 47 0.0016 23.3 1.8 22 2-23 31-52 (63)
154 2b8n_A Glycerate kinase, putat 20.3 81 0.0028 30.0 4.0 77 100-188 50-140 (429)
155 1o69_A Aminotransferase; struc 20.2 4.3E+02 0.015 23.0 8.8 53 122-187 33-85 (394)
156 3ezs_A Aminotransferase ASPB; 20.0 2.6E+02 0.009 23.9 7.1 58 117-186 59-120 (376)
No 1
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-44 Score=337.65 Aligned_cols=165 Identities=46% Similarity=0.855 Sum_probs=145.1
Q ss_pred CCCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC
Q 024329 92 SPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC 171 (269)
Q Consensus 92 ~~p~~~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~ 171 (269)
.+++..++|+||||||||++...+|+||+|||++|+++|++++||+.++|++|+|++.++...||++||+++|+||++++
T Consensus 46 ~~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a 125 (350)
T 4f6o_A 46 QYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDA 125 (350)
T ss_dssp CCCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTC
T ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhC
Confidence 56678899999999999888788999999999999999998899999999999998877777899999999999999999
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCCCccc
Q 024329 172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFV 251 (269)
Q Consensus 172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~dlp~~ 251 (269)
+++|+|||||||||.+..+.+|+|.||+||+|||+|++..|.|+++||.++|++.++++++|++|+||||||+++|+||.
T Consensus 126 ~pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~~ 205 (350)
T 4f6o_A 126 QPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYT 205 (350)
T ss_dssp CTTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSEE
T ss_pred CCCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCcccccccc
Confidence 99999999999999999999999999999999999998888999999999998889999999999999999999999999
Q ss_pred ccccc
Q 024329 252 CKING 256 (269)
Q Consensus 252 ~~~~~ 256 (269)
|+.++
T Consensus 206 ~~~~g 210 (350)
T 4f6o_A 206 YSTKG 210 (350)
T ss_dssp EETTE
T ss_pred ccccc
Confidence 98653
No 2
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=100.00 E-value=2.1e-40 Score=313.23 Aligned_cols=163 Identities=39% Similarity=0.672 Sum_probs=143.2
Q ss_pred CCCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC--CCCccHHHHHHHHHHHHH
Q 024329 92 SPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNP--YRIPTKQNIRTAMRWLAQ 169 (269)
Q Consensus 92 ~~p~~~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~--~~~pTk~nI~~aL~~L~~ 169 (269)
.++...+++|||+||||||+...+|+||+|||++|+++|+ ++||+.++|.+|+|++..+ ...||++||+++|+||++
T Consensus 85 ~~~~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~-~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~ 163 (367)
T 4af8_A 85 ATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQ-KRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVK 163 (367)
T ss_dssp CCCCTTCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHH-HTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHH-HcCCCchheEEecccccccccccCCCHHHHHHHHHHHHH
Confidence 3456789999999999988878899999999999999997 4899999999999875332 346999999999999999
Q ss_pred hCCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCCCc
Q 024329 170 DCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLP 249 (269)
Q Consensus 170 ~~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~dlp 249 (269)
++++||+|||||||||.+.++. ++|.||+||+|||+|++.+|.|+++||.++|++.+++++++++|+||||||+++|+|
T Consensus 164 ~a~pgD~l~fyFSGHG~q~~d~-~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~~l~~g~~v~vIlD~ChSGt~~dlp 242 (367)
T 4af8_A 164 DAKPGDVLFFHYSGHGTQCKSR-GDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLP 242 (367)
T ss_dssp TCCTTCEEEEEEESCEEEECCC------CCEEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEEECTTCCCCTTCS
T ss_pred hCCCCCEEEEEEcCCcCccCCC-CCCCCCcceEEEeecCCcCCCccHHHHHHHHHHhccCCCEEEEEEeCCCCCcccccc
Confidence 9999999999999999999885 678899999999999988899999999999889998899999999999999999999
Q ss_pred ccccccc
Q 024329 250 FVCKING 256 (269)
Q Consensus 250 ~~~~~~~ 256 (269)
|.++.++
T Consensus 243 ~~~~~r~ 249 (367)
T 4af8_A 243 FTYVCSG 249 (367)
T ss_dssp EEEECCT
T ss_pred ccccccc
Confidence 9876543
No 3
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=100.00 E-value=1.7e-33 Score=257.39 Aligned_cols=141 Identities=30% Similarity=0.441 Sum_probs=125.3
Q ss_pred CceEEEEEeeCC-C-----CCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC
Q 024329 98 GRKKALLCGVTY-N-----DTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC 171 (269)
Q Consensus 98 ~~k~ALlIGInY-~-----~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~ 171 (269)
++++||+||||+ . +...+|+||+|||+.|+++|+ ++||+ |.+|++++ ||++||+++|+||++++
T Consensus 2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~-~~Gf~---v~~l~~~~------~t~~~i~~al~~l~~~~ 71 (285)
T 3bij_A 2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAA-ERGFA---VTTLMTKA------ATRAKVIDAIGKAAKAL 71 (285)
T ss_dssp CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHH-HTTCE---EEEEEGGG------CCHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHH-HcCCc---eEEecCCc------cCHHHHHHHHHHHHHhC
Confidence 689999999994 2 345699999999999999995 68997 67777765 89999999999999999
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCC-Ccc
Q 024329 172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD-LPF 250 (269)
Q Consensus 172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~d-lp~ 250 (269)
+++|+|||||||||.+..+.+|+|.||++++|+|+|. .|.++||.++| +.+++++++++||||||||++.+ +||
T Consensus 72 ~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~----~i~~~~l~~~l-~~l~~~~~~~vilD~C~SG~~~~~~p~ 146 (285)
T 3bij_A 72 GKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG----ELIDDELYALL-GKFAAGVRVLVFSDSCHSGTVVKMAYY 146 (285)
T ss_dssp CTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS----EEEHHHHHHHH-TTSCSSCEEEEEEECCCCCCHHHHHHT
T ss_pred CCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC----CccHHHHHHHH-HhccCCCeEEEEEecCCCCcccccccc
Confidence 9999999999999999988889999999999999994 58899999988 67776789999999999999998 888
Q ss_pred ccc
Q 024329 251 VCK 253 (269)
Q Consensus 251 ~~~ 253 (269)
.++
T Consensus 147 ~~~ 149 (285)
T 3bij_A 147 NGT 149 (285)
T ss_dssp TC-
T ss_pred ccc
Confidence 653
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=99.83 E-value=2.8e-20 Score=177.09 Aligned_cols=127 Identities=23% Similarity=0.219 Sum_probs=103.5
Q ss_pred CCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCE
Q 024329 97 YGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDS 176 (269)
Q Consensus 97 ~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~ 176 (269)
.++++||||||+.|....+|+|+.+||++|+++|+ .+||+ |.+++| +|+++|+++|+++.+..+++|.
T Consensus 3 A~~r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~-~lGF~---V~~l~D--------lT~~eI~~aL~~f~~~~~~~D~ 70 (390)
T 3uoa_B 3 AKDKVALLIGNMNYREHPKLKAPLVDVYELTNLLR-QLDFK---VVSLLD--------LTEYEMRNAVDEFLLLLDKGVY 70 (390)
T ss_dssp BSCEEEEEEECCCCSSSCCCSTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHTCCTTCE
T ss_pred CCCCEEEEEEecCCCCcccCCChHHHHHHHHHHHH-HcCCe---EEEeec--------CCHHHHHHHHHHHHhhCCCCCE
Confidence 46899999999944445689999999999999997 58996 667776 6999999999999999999999
Q ss_pred EEEEEeccccccCCCCCCCCCCCcceeeccCCCC----CCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCC
Q 024329 177 LVFHYSGHGSRQKDYNKDELDGFDETICPLDHET----EGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVL 246 (269)
Q Consensus 177 lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~----~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~ 246 (269)
++|||||||.+.. | ..||+|.|... ...+..++|.+.+. .+ .++..++|||||+++...
T Consensus 71 ~l~yfsGHG~~~~---g------~~yL~p~Da~~~~~~~~~isl~~Ll~~l~-~~-~~K~kL~ILDACrg~~~~ 133 (390)
T 3uoa_B 71 GLLYYAGHGYENF---G------NSFMVPVDAPNPYRSENCLCVQNILKLMQ-EK-ETGLNVFLLDMCRKRNDY 133 (390)
T ss_dssp EEEEEESCEEEET---T------EEEECCTTCCSSCCGGGSEEHHHHHHHHH-HT-TCSEEEEEEESCCCCCTT
T ss_pred EEEEEecCccccC---C------cceEEecCCCccccccceeeHHHHHHHHH-hc-CCCceEEEEECCCCCCcc
Confidence 9999999999852 1 24899999863 23577888888774 34 346678999999996443
No 5
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=99.43 E-value=2.3e-12 Score=110.60 Aligned_cols=122 Identities=23% Similarity=0.292 Sum_probs=91.3
Q ss_pred CceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh--CCCCC
Q 024329 98 GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD--CQPGD 175 (269)
Q Consensus 98 ~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~--~~~gD 175 (269)
+++.|||||+..+....++.|+.+||+.|+++|+ .+||. |.+..| .|+++|+++|+++.++ .+..|
T Consensus 42 ~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~f~~~~d~~~~d 109 (178)
T 2h54_A 42 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSD 109 (178)
T ss_dssp CCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCS
T ss_pred cCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhhhcCCCC
Confidence 5789999999833445689999999999999996 58997 566666 6999999999999863 46789
Q ss_pred EEEEEEeccccccCCCCCCCCCCCcceeeccCCC--CCCCChHHHHHHHHhcc----CCCCCeEEEEEeCCCCCCC
Q 024329 176 SLVFHYSGHGSRQKDYNKDELDGFDETICPLDHE--TEGPIIDDEINATIVRP----LPRGAKLHAIIDSCYSGTV 245 (269)
Q Consensus 176 ~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~--~~g~I~~deL~~~L~~~----l~~g~~l~vIlD~C~SG~~ 245 (269)
.++|||.|||.+. .++..|.. ....+..++|.+.+... | .++--++|||||+.+..
T Consensus 110 ~~v~~~lsHG~~g-------------~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL-~gKPKlffiqACRg~~~ 171 (178)
T 2h54_A 110 STFLVFMSHGIRE-------------GICGKKHSEQVPDILQLNAIFNMLNTKNCPSL-KDKPKVIIIQACRGDSP 171 (178)
T ss_dssp CEEEEEESCBCSS-------------CEECTTCCSSSCCEECHHHHHHHHSTTTCGGG-TTSCEEEEEESCSSSBC
T ss_pred EEEEEEecCCCCC-------------eEEeecCCcccCcEEEHHHHHHHHhhcCChhh-cCCceEEEEECCCCCCC
Confidence 9999999999862 25556542 11246667777766321 2 23444699999997654
No 6
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=99.22 E-value=6.3e-11 Score=106.27 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=89.5
Q ss_pred CCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-C
Q 024329 97 YGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-Q 172 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~ 172 (269)
.++..|||||+. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+.. +
T Consensus 14 ~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~~~ 81 (250)
T 2j32_A 14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 81 (250)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhcc
Confidence 467899999997 653 23688999999999999996 58996 566666 69999999999998774 6
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhcc----CCCCCeEEEEEeCCCCCC
Q 024329 173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRP----LPRGAKLHAIIDSCYSGT 244 (269)
Q Consensus 173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~----l~~g~~l~vIlD~C~SG~ 244 (269)
..|.++|||.|||.. | .+++.|. .+.-++|.+.+... +. ++--++|||||....
T Consensus 82 ~~d~~v~~~lsHG~~-----g--------~i~~~D~----~v~l~~i~~~f~~~~cp~L~-gKPKlf~iqACRg~~ 139 (250)
T 2j32_A 82 KRSSFVCVLLSHGEE-----G--------IIFGTNG----PVDLKKITNFFRGDRCRSLT-GKPKLFIIQACRGTE 139 (250)
T ss_dssp TEEEEEEEEESCEET-----T--------EEEETTE----EEEHHHHHHTTSTTTCGGGT-TSCEEEEEESCSEEE
T ss_pred CCCEEEEEECCCCCC-----C--------eEEecCC----cEEHHHHHHHhccccChhHc-CCCeEEEEecccCCc
Confidence 689999999999983 1 4667763 56667776666321 32 333369999998443
No 7
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=99.19 E-value=1.3e-10 Score=107.21 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=91.7
Q ss_pred CceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh--CCCCC
Q 024329 98 GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD--CQPGD 175 (269)
Q Consensus 98 ~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~--~~~gD 175 (269)
+++.|||||+..+.....+.|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|+++.+. ....|
T Consensus 59 ~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~dh~~~d 126 (302)
T 3e4c_A 59 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSD 126 (302)
T ss_dssp CCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCS
T ss_pred CccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhhhccCCCC
Confidence 4689999999833345789999999999999996 58997 566666 6999999999999763 45689
Q ss_pred EEEEEEeccccccCCCCCCCCCCCcceeeccCCCC--CCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329 176 SLVFHYSGHGSRQKDYNKDELDGFDETICPLDHET--EGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV 245 (269)
Q Consensus 176 ~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~--~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~ 245 (269)
.++|||.|||.+. ++++.|... ...+..++|.+.+.. .| .++--++|||||+....
T Consensus 127 ~~vv~~lsHG~~~-------------~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL-~gKPKlffIQACRG~~~ 188 (302)
T 3e4c_A 127 STFLVFMSHGIRE-------------GICGKKHSEQVPDILQLNAIFNMLNTKNCPSL-KDKPKVIIIQAARGDSP 188 (302)
T ss_dssp CEEEEEEEEEETT-------------EEECTTCCSSSCCEECHHHHHHHTSTTTCGGG-TTSCEEEEEEEECSSSC
T ss_pred EEEEEEeccCcCC-------------eEEeecccccCCcEEEHHHHHHHHhhhcchhh-cCCccEEEEECCCCCCC
Confidence 9999999999962 466666421 235667778777632 12 23333699999996554
No 8
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=99.18 E-value=1.2e-10 Score=105.84 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=89.9
Q ss_pred CCceEEEEEeeC-CCC-CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 024329 97 YGRKKALLCGVT-YND-TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQP 173 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~~ 173 (269)
.++..||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|+++.+. ...
T Consensus 30 ~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~~ 97 (272)
T 1m72_A 30 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD 97 (272)
T ss_dssp SEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCTT
T ss_pred CCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhcCC
Confidence 357899999997 654 24689999999999999996 58996 566666 6999999999999876 467
Q ss_pred CCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329 174 GDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV 245 (269)
Q Consensus 174 gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~ 245 (269)
.|.++|||.|||.. .+|++.|. .+..++|.+.+.. .+ .++--++|||||....+
T Consensus 98 ~d~~v~~~lsHG~~-------------~~i~~~D~----~v~l~~i~~~f~~~~cpsL-~gKPKlffiqACRg~~~ 155 (272)
T 1m72_A 98 ADCLLVAVLTHGEL-------------GMLYAKDT----HYKPDNLWYYFTADKCPTL-AGKPKLFFIQACQGDRL 155 (272)
T ss_dssp EEEEEEEEESCEET-------------TEEECSSS----EECTTHHHHTTSTTTCGGG-TTSCEEEEEESCSSSBC
T ss_pred CCEEEEEEcCCCCC-------------CEEEecCC----cEEHHHHHHHhccccChhh-cCCceEEEEeCCCCCcc
Confidence 89999999999973 26888885 3555566665521 12 23333699999995433
No 9
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=99.17 E-value=1.5e-10 Score=106.89 Aligned_cols=120 Identities=13% Similarity=0.192 Sum_probs=90.4
Q ss_pred CCCceEEEEEeeC-CCCC--CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-
Q 024329 96 VYGRKKALLCGVT-YNDT--NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC- 171 (269)
Q Consensus 96 ~~~~k~ALlIGIn-Y~~~--~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~- 171 (269)
..+++.|||||+. |... ...+.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+..
T Consensus 66 ~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h 133 (305)
T 1f1j_A 66 FEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDH 133 (305)
T ss_dssp SSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHHSCG
T ss_pred CCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhc
Confidence 3467899999997 6542 2467899999999999996 58996 566666 69999999999988763
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329 172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV 245 (269)
Q Consensus 172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~ 245 (269)
...|.++|||.|||.. .+|++.|. .+..++|.+.+.. .+ .++--++|||||+...+
T Consensus 134 ~~~d~~vv~ilsHG~~-------------~~i~g~D~----~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~~ 193 (305)
T 1f1j_A 134 TNAACFACILLSHGEE-------------NVIYGKDG----VTPIKDLTAHFRGDRSKTL-LEKPKLFFIQACRGTEL 193 (305)
T ss_dssp GGEEEEEEEEESCEET-------------TEEECSSS----EEEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSBC
T ss_pred CCCCEEEEEEecCCCC-------------CeEEecCC----eEEHHHHHHHhhhccChhh-cCCceEEEeccccCCcc
Confidence 5679999999999985 26888884 4666677665521 12 23333699999986553
No 10
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=99.11 E-value=4.2e-10 Score=102.55 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=91.7
Q ss_pred CCCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-C
Q 024329 96 VYGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-C 171 (269)
Q Consensus 96 ~~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~ 171 (269)
..++..||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|+++.+. .
T Consensus 41 ~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh 108 (277)
T 4ehd_A 41 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDH 108 (277)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhcc
Confidence 3577899999997 653 24578999999999999996 58996 666666 6999999999999875 5
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329 172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT 244 (269)
Q Consensus 172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~ 244 (269)
...|.++++|.|||.+ .+|++.|. .+..++|.+.+.. .| .++--++|||||+...
T Consensus 109 ~~~d~~vv~ilSHG~~-------------g~i~g~D~----~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~ 167 (277)
T 4ehd_A 109 SKRSSFVCVLLSHGEE-------------GIIFGTNG----PVDLKKITNFFRGDRCRSL-TGKPKLFIIQACRGTE 167 (277)
T ss_dssp TTEEEEEEEEESCEET-------------TEEEETTE----EEEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSB
T ss_pred cCCCEEEEEEEcCCCC-------------CEEEEeCC----cEeHHHHHHHhhhccCchh-cCCccEEEEecCCCCc
Confidence 6789999999999996 16888885 4667777766632 12 2333369999998543
No 11
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=99.11 E-value=4.3e-10 Score=104.27 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=90.6
Q ss_pred CceEEEEEeeC-CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-C-CC
Q 024329 98 GRKKALLCGVT-YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-Q-PG 174 (269)
Q Consensus 98 ~~k~ALlIGIn-Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~-~g 174 (269)
++..||||++. |......+.|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|+++.+.. . ..
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~h~~~~ 127 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQ-ELNFT---IFPYGN--------VNQDQFFKLLTMVTSSSYVQNT 127 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHH-HTTEE---EEEECS--------CCHHHHHHHHHHHHTSHHHHTC
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEccC--------CCHHHHHHHHHHHHHHhhcCCC
Confidence 78999999987 65322789999999999999996 68996 566666 69999999999998765 3 68
Q ss_pred CEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329 175 DSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT 244 (269)
Q Consensus 175 D~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~ 244 (269)
|.++++|.|||.+... +.+|++.|.. .+..++|.+.+.. .| .++--++|||||....
T Consensus 128 D~~vv~ilSHG~~~~g---------~g~i~g~D~~---~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~ 188 (316)
T 2fp3_A 128 ECFVMVLMTHGNSVEG---------KEKVEFRDGS---VVDMQKIKDHFQTAKCPYL-VNKPKVLMFPFARGDE 188 (316)
T ss_dssp SCEEEEEESCEECCTT---------CCEEECTTSC---EEEHHHHHHTTSTTTCGGG-TTSCEEEEESCC----
T ss_pred CEEEEEEccCCCccCC---------CCEEEeecCc---EEeHHHHHHHhccccChhh-cCCceEEEEecCCCCc
Confidence 9999999999997531 2478898853 3666777766632 12 2333369999998644
No 12
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=99.11 E-value=2.5e-10 Score=105.65 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=90.5
Q ss_pred CCceEEEEEeeC-CCC-CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 024329 97 YGRKKALLCGVT-YND-TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQP 173 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~~ 173 (269)
.++..||||++. |.. ....+.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+. ...
T Consensus 58 ~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh~~ 125 (310)
T 2nn3_C 58 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD 125 (310)
T ss_dssp SBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHSSCGGG
T ss_pred CCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHHhccCC
Confidence 457899999997 653 34689999999999999996 58996 666666 6999999999999875 467
Q ss_pred CCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329 174 GDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV 245 (269)
Q Consensus 174 gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~ 245 (269)
.|.++|||.|||.. .+|++.|. .+..++|.+.+.. .+ .++--++|||||....+
T Consensus 126 ~D~~vv~ilSHG~~-------------g~i~g~D~----~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~~ 183 (310)
T 2nn3_C 126 ADCLLVAVLTAGEL-------------GMLYAKDT----HYKPDNLWYYFTADKCPTL-AGKPKLFFIQACQGDRL 183 (310)
T ss_dssp BSCEEEEEEEEEET-------------TEEECSSC----EECTHHHHGGGSTTTCGGG-TTSCEEEEEEEECCCCC
T ss_pred CCEEEEEEeCCCCC-------------CEEEecCC----cEEHHHHHHHhccccChhh-cCCceEEEEecccCCcc
Confidence 89999999999973 26888885 3555666655521 12 23333699999986444
No 13
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=99.10 E-value=7.7e-10 Score=100.76 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=90.9
Q ss_pred CCCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-C
Q 024329 96 VYGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-C 171 (269)
Q Consensus 96 ~~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~ 171 (269)
..++..||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|+++.+. .
T Consensus 18 ~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h 85 (278)
T 3od5_A 18 HRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSH 85 (278)
T ss_dssp SSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCC
T ss_pred CCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhcc
Confidence 3467899999997 653 34688999999999999996 58996 566666 6999999999998654 4
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329 172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT 244 (269)
Q Consensus 172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~ 244 (269)
...|.++++|.+||.. .+|++.|.. +..++|.+.+.. .| .++--++|||||....
T Consensus 86 ~~~d~~vv~ilSHG~~-------------g~i~g~D~~----v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~ 144 (278)
T 3od5_A 86 ADADCFVCVFLSHGEG-------------NHIYAYDAK----IEIQTLTGLFKGDKCHSL-VGKPKIFIIQACRGNQ 144 (278)
T ss_dssp TTBSCEEEEEESCEET-------------TEEECSSSE----EEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSB
T ss_pred cCCCEEEEEEECCCCC-------------CEEEEeCCe----EEHHHHHHHhccccChhh-cCCCcEEEEecCCCCc
Confidence 6789999999999984 158888753 777777766632 12 2333369999999543
No 14
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=99.07 E-value=1.1e-09 Score=99.40 Aligned_cols=127 Identities=19% Similarity=0.148 Sum_probs=90.6
Q ss_pred CCCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-
Q 024329 96 VYGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC- 171 (269)
Q Consensus 96 ~~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~- 171 (269)
..++..||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|+++.+..
T Consensus 18 ~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~h 85 (277)
T 1nw9_B 18 MEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD--------LTAKKMVLALLELARQDH 85 (277)
T ss_dssp CSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHHSCC
T ss_pred CCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEcC--------CCHHHHHHHHHHHHHhhc
Confidence 3467899999987 653 23578999999999999996 58996 566666 69999999999998764
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329 172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT 244 (269)
Q Consensus 172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~ 244 (269)
+..|.++++|.|||.+.. +. +.+..+.+.|.. .+..++|.+.+.. .| .++--++|||||....
T Consensus 86 ~~~D~~vv~ilSHG~~~~---~~---~~~g~iy~~D~~---~v~l~~i~~~f~~~~CpsL-~gKPKlffiQACRG~~ 152 (277)
T 1nw9_B 86 GALDCCVVVILSHGCQAS---HL---QFPGAVYGTDGC---PVSVEKIVNIFNGTSCPSL-GGKPKLFFIQACGGEQ 152 (277)
T ss_dssp TTCSEEEEEEEEEEECCC---CS---SSCCEEECTTSC---EEEHHHHHHTTCTTTCGGG-TTSCEEEEEEEEC---
T ss_pred ccCCeEEEEEeCCCCccc---cc---cCCCcEEecCCc---eeeHHHHHHHhcccCChhH-cCCCcEEEEeccCCCc
Confidence 567999999999998742 11 122356677642 4666677665521 12 2333369999998544
No 15
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=99.07 E-value=1.3e-10 Score=104.95 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=80.5
Q ss_pred CCceEEEEEeeC-CCC-CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 024329 97 YGRKKALLCGVT-YND-TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQP 173 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~~ 173 (269)
.++..||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|+++.+. .+.
T Consensus 18 ~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~~ 85 (259)
T 3sir_A 18 KNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLK-QLDFE---VTVYKD--------CRYKDILRTIEYSASQNHSD 85 (259)
T ss_dssp SEEEEEEEEEECCC-----------CCHHHHHHHHHH-HTTCE---EEEEEE--------CSHHHHHHHHHHHHTSCCTT
T ss_pred CCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccC
Confidence 467899999997 653 23577899999999999996 58997 566666 6899999999998865 567
Q ss_pred CCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329 174 GDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT 244 (269)
Q Consensus 174 gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~ 244 (269)
.|.++|+|.|||.+. +|++.|. .+..++|.+.+.. .| .++--++|||||+...
T Consensus 86 ~d~~v~~~lsHG~~g-------------~i~~~D~----~v~l~~i~~~f~~~~cpsL-~gKPKlf~iQACRG~~ 142 (259)
T 3sir_A 86 SDCILVAILSHGEMG-------------YIYAKDT----QYKLDNIWSFFTANHCPSL-AGKPKLFFIQACQGDR 142 (259)
T ss_dssp EEEEEEEEEECTTCC-------------CCCCTTH----HHHHHHTTGGGSTTTCGGG-SSSCEEEEEEEETTSC
T ss_pred CCEEEEEEecCCCCC-------------eEEeCCC----cEEHHHHHHHhhhccCccc-cCCCCEEEEecCCCCc
Confidence 899999999999961 4667763 2444454443421 11 2333369999999654
No 16
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=99.02 E-value=2.6e-09 Score=96.94 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=90.0
Q ss_pred CCceEEEEEeeC-CCCC---------CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHH
Q 024329 97 YGRKKALLCGVT-YNDT---------NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRW 166 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~~---------~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~ 166 (269)
.++.+||||++. |... ..+..|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|++
T Consensus 15 ~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~ 82 (271)
T 3h11_B 15 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI 82 (271)
T ss_dssp SSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred CCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHH
Confidence 467899999986 5531 3567899999999999996 58997 566666 699999999999
Q ss_pred HHHh-CCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCC
Q 024329 167 LAQD-CQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCY 241 (269)
Q Consensus 167 L~~~-~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~ 241 (269)
+.+. -+..|.++++|.+||.. .+|++.|.. .+.-++|.+.+.. .| .++--++|||||.
T Consensus 83 ~~~~~h~~~d~~v~~ilSHG~~-------------g~i~g~D~~---~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACR 145 (271)
T 3h11_B 83 YQLMDHSNMDCFICCILSHGDK-------------GIIYGTDGQ---EAPIYELTSQFTGLKCPSL-AGKPKVFFIQACQ 145 (271)
T ss_dssp HHHSCCTTCSCEEEEEESCEET-------------TEEECTTSC---EEEHHHHHGGGSTTTCGGG-TTSCEEEEEESCC
T ss_pred HHHhcCCCCCEEEEEEEcCCcC-------------CEEEecCCC---eecHHHHHHHhhhccChhh-cCCccEEEEeccC
Confidence 9875 35689999999999985 168888853 3555666665521 12 2333369999998
Q ss_pred CCCC
Q 024329 242 SGTV 245 (269)
Q Consensus 242 SG~~ 245 (269)
....
T Consensus 146 G~~~ 149 (271)
T 3h11_B 146 GDNY 149 (271)
T ss_dssp SSBC
T ss_pred CCcc
Confidence 6544
No 17
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=98.76 E-value=1.5e-07 Score=79.76 Aligned_cols=120 Identities=20% Similarity=0.259 Sum_probs=90.0
Q ss_pred CCceEEEEEeeC-CCCC--CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH--hC
Q 024329 97 YGRKKALLCGVT-YNDT--NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ--DC 171 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~~--~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~--~~ 171 (269)
.++..||||.+. |... .....|+..|++.|+++|+ .+||. |.+..| .|.++|++.|+++.+ .-
T Consensus 31 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh 98 (167)
T 1pyo_A 31 RPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFK-LLGYD---VHVLCD--------QTAQEMQEKLQNFAQLPAH 98 (167)
T ss_dssp SSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHTCGGG
T ss_pred CCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHhhhhhhc
Confidence 467899999886 5432 2467999999999999996 68996 556665 699999999999987 34
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329 172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV 245 (269)
Q Consensus 172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~ 245 (269)
...|.++++|.+||.. .++++.|.. .+..++|.+.+.. .| .++--++||+||.....
T Consensus 99 ~~~dc~vv~ilSHG~~-------------g~i~g~D~~---~v~l~~i~~~F~~~~CpsL-~gKPKlffiQACRG~~~ 159 (167)
T 1pyo_A 99 RVTDSCIVALLSHGVE-------------GAIYGVDGK---LLQLQEVFQLFDNANCPSL-QNKPKMFFIQACRGDET 159 (167)
T ss_dssp GTSSEEEEEEESCEET-------------TEEECTTSC---EEEHHHHHHHTSTTTCGGG-TTSCEEEEEESCSSSBC
T ss_pred cCCCEEEEEeCCCCCC-------------CeEEEeCCC---EEcHHHHHHHhcccCChhH-cCCCeEEEEECCCCCCC
Confidence 6789999999999985 157777742 3666777776632 13 24434699999986543
No 18
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=98.65 E-value=3.3e-07 Score=76.05 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCceEEEEEeeC-CCCC--CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-C
Q 024329 97 YGRKKALLCGVT-YNDT--NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-Q 172 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~~--~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~ 172 (269)
.++..||||... |... ..+..|+..|++.|+++|+ .+||. |.+..| .|.++|++.|+++.+.- +
T Consensus 14 ~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 81 (146)
T 2dko_A 14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 81 (146)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred CCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHHhhcC
Confidence 356788888876 4421 2466899999999999996 58997 556666 69999999999998764 5
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329 173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV 245 (269)
Q Consensus 173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~ 245 (269)
..|.++++|.+||.. ..++..|. .+.-++|.+.+.. .| .++--++||+||.....
T Consensus 82 ~~dc~vv~ilSHG~~-------------g~i~g~D~----~~~l~~i~~~F~~~~CpsL-~gKPKlffiQACRG~~~ 140 (146)
T 2dko_A 82 KRSSFVCVLLSHGEE-------------GIIFGTNG----PVDLKKITNFFRGDRCRSL-TGKPKLFIIQACRGTEL 140 (146)
T ss_dssp TEEEEEEEEESCEET-------------TEEEETTE----EEEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSBC
T ss_pred CCCeEEEEeccCCCC-------------CEEEEeCC----cEeHHHHHHHhccccChhh-cCCCeEEEEECCCCCCC
Confidence 679999999999984 15777774 4666677665521 12 34444699999985443
No 19
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=98.59 E-value=7.1e-07 Score=75.34 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=87.8
Q ss_pred CCceEEEEEeeC-CCC---------CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHH
Q 024329 97 YGRKKALLCGVT-YND---------TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRW 166 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~---------~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~ 166 (269)
.++.+||||... |.. ......|+..|++.|+++|+ .+||. |.+..| .|.++|++.|++
T Consensus 21 ~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~ 88 (164)
T 1qtn_A 21 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI 88 (164)
T ss_dssp SSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred CCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHH
Confidence 356799999875 442 13477999999999999996 68997 556555 699999999999
Q ss_pred HHHh-CCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCC
Q 024329 167 LAQD-CQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCY 241 (269)
Q Consensus 167 L~~~-~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~ 241 (269)
+.+. -...|.++++|.+||.. ..++..|.. .+.-++|.+.+.. .| .|+--++||.||.
T Consensus 89 ~~~~dh~~~dc~vv~ilSHG~~-------------g~i~g~D~~---~v~i~~i~~~F~~~~CpsL-~gKPKlFfiQACR 151 (164)
T 1qtn_A 89 YQLMDHSNMDCFICCILSHGDK-------------GIIYGTDGQ---EAPIYELTSQFTGLKCPSL-AGKPKVFFIQACQ 151 (164)
T ss_dssp HHHSCCTTCSCEEEEEESCEET-------------TEEECTTSC---EEEHHHHHGGGSTTTCGGG-TTSCEEEEEESCS
T ss_pred HHHhhccCCCEEEEEeCCCCCC-------------CEEEeeCCC---EeeHHHHHHHhccccChhh-cCCCeEEEEECCC
Confidence 9765 36789999999999984 157777742 3555677665522 12 2443469999998
Q ss_pred CCCC
Q 024329 242 SGTV 245 (269)
Q Consensus 242 SG~~ 245 (269)
....
T Consensus 152 G~~~ 155 (164)
T 1qtn_A 152 GDNY 155 (164)
T ss_dssp SSBC
T ss_pred CCCc
Confidence 6443
No 20
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=98.35 E-value=3.8e-06 Score=71.54 Aligned_cols=118 Identities=13% Similarity=0.195 Sum_probs=84.4
Q ss_pred CCceEEEEEeeC-CCCC--CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CC
Q 024329 97 YGRKKALLCGVT-YNDT--NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQ 172 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~~--~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~ 172 (269)
..+..||||... |... ...-.|+..|++.|.++|. .+||. |.+..| .|.++|++.|+++.+. -.
T Consensus 42 ~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LgF~---V~v~~d--------lt~~em~~~l~~~s~~dh~ 109 (173)
T 2ql9_A 42 EKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDHT 109 (173)
T ss_dssp SEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhcc
Confidence 355678888765 4321 2345899999999999996 58996 555555 6999999999998765 35
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329 173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT 244 (269)
Q Consensus 173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~ 244 (269)
..|.+++++.+||... .++..|. .+.-++|.+.+.. .| .|+--++||.||....
T Consensus 110 ~~dc~vvvilSHG~~g-------------~I~g~D~----~~~i~~I~~~F~~~~CpsL-~gKPKlFfIQACRG~~ 167 (173)
T 2ql9_A 110 NAACFACILLSHGEEN-------------VIYGKDG----VTPIKDLTAHFRGDRCKTL-LEKPKLFFIQACRGTE 167 (173)
T ss_dssp TEEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHGGGSTTTCGGG-TTSCEEEEEESCCSSB
T ss_pred CCCeEEEeecCCCCCC-------------EEEEcCC----cEEHHHHHHHcCcccChhH-cCCCeEEEEECCCCCC
Confidence 6799999999999851 5777774 3556666655521 12 3443469999998544
No 21
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=98.26 E-value=1e-05 Score=69.32 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=84.5
Q ss_pred CCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CC
Q 024329 97 YGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQ 172 (269)
Q Consensus 97 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~ 172 (269)
.++.+||||.+. |.. ...+-.|+..|++.|+++|+ .+||. |.+..| .|.++|++.|+++.+. -.
T Consensus 42 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 109 (179)
T 3p45_A 42 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSHA 109 (179)
T ss_dssp SBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHhhhhcC
Confidence 456789999886 442 34577999999999999996 59997 556666 6999999999998653 24
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329 173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT 244 (269)
Q Consensus 173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~ 244 (269)
..|.+++++..||.. ..++..|. .+.-++|.+.+.. .| .++--++||.||....
T Consensus 110 ~~dc~vvvilSHG~~-------------g~I~g~D~----~v~l~~I~~~F~~~~CpsL-~gKPKlFfIQACRG~~ 167 (179)
T 3p45_A 110 DADCFVCVFLSHGEG-------------NHIYAYDA----KIEIQTLTGLFKGDKCHSL-VGKPKIFIIQACRGNQ 167 (179)
T ss_dssp TBSCEEEEEESCEET-------------TEEECSSS----EEEHHHHHGGGSGGGCGGG-TTSCEEEEEECC----
T ss_pred CCCEEEEEEeccCCC-------------CEEEEECC----EEEHHHHHHhcccccChhh-CCCCcEEEEECCCCCC
Confidence 679999999999984 14777774 2666777766632 12 3444469999999543
No 22
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=97.88 E-value=3.5e-05 Score=69.86 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=79.8
Q ss_pred CCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH--hCCCC
Q 024329 97 YGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ--DCQPG 174 (269)
Q Consensus 97 ~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~--~~~~g 174 (269)
.++-.||||-.. .+|++.|+++|+ .+||. |.+..| .|.++|++.|+++.+ .....
T Consensus 41 ~~rG~~LIinn~-----------~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh~~~ 97 (272)
T 3h11_A 41 KPLGICLIIDCI-----------GNETELLRDTFT-SLGYE---VQKFLH--------LSMHGISQILGQFACMPEHRDY 97 (272)
T ss_dssp SSSEEEEEEESS-----------CCCCSHHHHHHH-HHTEE---EEEEES--------CBHHHHHHHHHHHHTCGGGGGC
T ss_pred CcceEEEEECCc-----------hHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhccccCCC
Confidence 355677777642 169999999996 58996 556666 699999999999986 46789
Q ss_pred CEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCC
Q 024329 175 DSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSG 243 (269)
Q Consensus 175 D~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG 243 (269)
|.++++|.+||.. .+|++.|.... .+.-++|.+.+.. .| .|+--++||+||...
T Consensus 98 d~~v~~ilSHG~~-------------g~i~g~D~~~~-~v~l~~i~~~f~~~~CpsL-~gKPKlffiQACRG~ 155 (272)
T 3h11_A 98 DSFVCVLVSRGGS-------------QSVYGVDQTHS-GLPLHHIRRMFMGDSCPYL-AGKPKMFFIQNYVVS 155 (272)
T ss_dssp SEEEEEEEEEEET-------------TEECBTSCCSS-CEEHHHHHHHHSTTTCGGG-TTSCEEEEEEEEEC-
T ss_pred CEEEEEEEcCCCC-------------CeEEEEcCCcc-eEeHHHHHHHhccccChhh-cCCCcEEEEECCCCC
Confidence 9999999999984 15777775321 3666788777743 22 344446999999853
No 23
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=90.15 E-value=0.12 Score=37.47 Aligned_cols=34 Identities=26% Similarity=0.614 Sum_probs=30.7
Q ss_pred cccccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329 3 SRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 3 ~~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
+-.++|+ |++.+-+..++.+.+|. |.++-++...
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~ 35 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDR 35 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECCSS
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceE
Confidence 5678999 99999999999999998 9999988864
No 24
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=78.03 E-value=1.1 Score=31.51 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=24.7
Q ss_pred CCcccccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329 1 MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 1 ~~~~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
|-+....|..|+.+-. ..+|..|...|.++-+
T Consensus 2 Mks~mr~C~~CgvYTL------k~~CP~CG~~T~~~hP 33 (60)
T 2apo_B 2 VEMRMKKCPKCGLYTL------KEICPKCGEKTVIPKP 33 (60)
T ss_dssp -CCCCEECTTTCCEES------SSBCSSSCSBCBCCCC
T ss_pred chhhceeCCCCCCEec------cccCcCCCCcCCCCCC
Confidence 4567788999998633 5569999999988865
No 25
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=74.03 E-value=2.5 Score=27.74 Aligned_cols=33 Identities=24% Similarity=0.552 Sum_probs=27.6
Q ss_pred CCcccccCCCCCC-ceecCCCCceeeccccccee
Q 024329 1 MTSRVERCSGCGR-QLWLPPQAVAARCYACRSVT 33 (269)
Q Consensus 1 ~~~~~~~c~~c~~-~~~~~~~~~~~~c~~c~~~~ 33 (269)
|......|..|+. .|..-+......|..|..|-
T Consensus 1 m~~~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 1 MVNKQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSSCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred CCCccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 6666788999998 89888888889999997653
No 26
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.01 E-value=4.3 Score=28.65 Aligned_cols=30 Identities=23% Similarity=0.618 Sum_probs=22.7
Q ss_pred ccccCCCCCCc-eecCCCCceeeccccccee
Q 024329 4 RVERCSGCGRQ-LWLPPQAVAARCYACRSVT 33 (269)
Q Consensus 4 ~~~~c~~c~~~-~~~~~~~~~~~c~~c~~~~ 33 (269)
|.|.|.+|... .....-...+.|..|..+-
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATL 44 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEE
Confidence 44569999984 6666777899999997553
No 27
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=67.51 E-value=3.1 Score=29.62 Aligned_cols=30 Identities=13% Similarity=0.506 Sum_probs=24.2
Q ss_pred ccccCCCCCCc-eecCCCCceeeccccccee
Q 024329 4 RVERCSGCGRQ-LWLPPQAVAARCYACRSVT 33 (269)
Q Consensus 4 ~~~~c~~c~~~-~~~~~~~~~~~c~~c~~~~ 33 (269)
|-|+|++|... .....-...+.|..|..+-
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEE
Confidence 67889999984 6666777899999998654
No 28
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=66.60 E-value=5 Score=27.75 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=29.0
Q ss_pred cccccCCC--CCCce----ecCCCCceeecccccceeeccCC
Q 024329 3 SRVERCSG--CGRQL----WLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 3 ~~~~~c~~--c~~~~----~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
+..++|.+ |++.| ++-.+.+..+|.+|...+.+...
T Consensus 7 ~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~ 48 (59)
T 2yrc_A 7 GEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPS 48 (59)
T ss_dssp CCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSC
T ss_pred CCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHH
Confidence 46789998 99964 45567789999999988888765
No 29
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=65.49 E-value=9 Score=34.15 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHHhhCC--CCcceEEe-cCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEE
Q 024329 117 TGSINDVKSMWFLLVRMLGF--PSDCVVIL-TEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFH 180 (269)
Q Consensus 117 ~g~~nDA~~m~~~L~~~~Gf--~~~~I~lL-td~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfY 180 (269)
.|...=-+.+++++..++|. ++++|.++ +.. ..+.+..++.-+..-.++||.|++-
T Consensus 71 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G--------~~~al~~~~~~l~~~~~~gd~Vlv~ 129 (401)
T 7aat_A 71 AGLADFTRASAELALGENSEAFKSGRYVTVQGIS--------GTGSLRVGANFLQRFFKFSRDVYLP 129 (401)
T ss_dssp TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH--------HHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCHHHHHHHHHHhcCCCccccccCceEEEecCc--------chHHHHHHHHHHHHhccCCCEEEEc
Confidence 34333344566777555553 36777653 432 3445555555555556789999883
No 30
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=64.50 E-value=4.7 Score=29.50 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=26.6
Q ss_pred cccCCCCCCceecCCCCceeecccccceeecc
Q 024329 5 VERCSGCGRQLWLPPQAVAARCYACRSVTSFP 36 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~ 36 (269)
..+|++|+..+...++...+.|..|+...-+.
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVR 56 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSS
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccc
Confidence 34699999998888888889999999777554
No 31
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=62.72 E-value=3.3 Score=28.96 Aligned_cols=32 Identities=28% Similarity=0.648 Sum_probs=23.1
Q ss_pred CCcccccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329 1 MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 1 ~~~~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
|-+++..|..|+.+-. .-.|..|...|.++-+
T Consensus 1 Mks~mr~C~~Cg~YTL------k~~CP~CG~~t~~ahP 32 (60)
T 2aus_D 1 MRFRIRKCPKCGRYTL------KETCPVCGEKTKVAHP 32 (60)
T ss_dssp ---CCEECTTTCCEES------SSBCTTTCSBCEESSC
T ss_pred CCccceECCCCCCEEc------cccCcCCCCccCCCCC
Confidence 5677888999988643 3449999999998865
No 32
>3uws_A Hypothetical protein; clostripain family protein, peptidase_C11, structural genomi center for structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides merdae}
Probab=61.62 E-value=21 Score=28.08 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=56.8
Q ss_pred eEEEEEeeCCCCCCCCC-CChHHHHHHHHHHHHHhhCCCCcceEEecCCCC-----------------------CCCCCc
Q 024329 100 KKALLCGVTYNDTNYML-TGSINDVKSMWFLLVRMLGFPSDCVVILTEEEK-----------------------NPYRIP 155 (269)
Q Consensus 100 k~ALlIGInY~~~~~~L-~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~-----------------------~~~~~p 155 (269)
+|.++|=.... .+| .+..+|.+.|.+.+.+ .|....+++++.|... ......
T Consensus 9 ~~TvlvYm~~d---N~L~~~~~~di~eM~~g~~~-~g~~~~~llV~~d~~~~~~~L~~i~~~~g~~~~~~lk~y~e~n~~ 84 (126)
T 3uws_A 9 TRTILVYMMAN---NSLNSFASKNIESMIEGATS-KNLNGGNLIVYYAPAGSPPELLRIKEENGVVKKIHLKDYEKQNSA 84 (126)
T ss_dssp EEEEEEEEEES---STTHHHHHHHHHHHHHHCCH-HHHTTCEEEEEEEESSSCCEEEEEEEETTEEEEEEEEECCSCCTT
T ss_pred CeEEEEEEcCC---CChHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEcCCCCCCeEEEEEeCCCcEEeehhhccCCcCcC
Confidence 78888866543 356 6778999999988753 2334445666555210 112456
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Q 024329 156 TKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQK 189 (269)
Q Consensus 156 Tk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~ 189 (269)
+.+.+.+.|+|..+.. |-+.-.+.|.+||.-+.
T Consensus 85 d~~~l~~~l~~~~~~~-PA~~y~LIlw~HG~GW~ 117 (126)
T 3uws_A 85 DPDVMRSVIGEVVSQY-PADSYGLVLWSHGTAWL 117 (126)
T ss_dssp SHHHHHHHHHHHHHHS-CEEEEEEEEESCBCTTC
T ss_pred CHHHHHHHHHHHHHhC-CccceEEEEEeCCCcCc
Confidence 7777888888888775 45888888899998543
No 33
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.47 E-value=4.4 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.527 Sum_probs=21.5
Q ss_pred ccCCCCCCceecCCCCceeecccccce
Q 024329 6 ERCSGCGRQLWLPPQAVAARCYACRSV 32 (269)
Q Consensus 6 ~~c~~c~~~~~~~~~~~~~~c~~c~~~ 32 (269)
-.|+.||..+.+.+......|..|.-+
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCE
Confidence 349999998777667788999999743
No 34
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=60.16 E-value=4.9 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.421 Sum_probs=23.1
Q ss_pred ccccCCCCCCc-eecCCCCceeeccccccee
Q 024329 4 RVERCSGCGRQ-LWLPPQAVAARCYACRSVT 33 (269)
Q Consensus 4 ~~~~c~~c~~~-~~~~~~~~~~~c~~c~~~~ 33 (269)
|-|.|.+|..- ...-.-...|.|..|..+-
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAIL 61 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEE
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEE
Confidence 56789999884 5666777889999998653
No 35
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=60.06 E-value=18 Score=31.96 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH
Q 024329 120 INDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ 169 (269)
Q Consensus 120 ~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~ 169 (269)
...|+.|+++|.+.+|++.+.|++-.... -|.+|++.+.+.|.+
T Consensus 96 ~sEA~~m~~~l~~~~GVp~~~IllE~~S~------nT~ENa~~s~~ll~~ 139 (266)
T 3ca8_A 96 RAEATILADIAHQFWHIPHEKIWIEDQST------NCGENARFSIALLNQ 139 (266)
T ss_dssp SCHHHHHHHHHHHTTCCCGGGEEEECCCC------SHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCHHHEEeCCCCc------cHHHHHHHHHHHHHh
Confidence 47899999999876799998886543332 489999988877754
No 36
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=56.78 E-value=5.7 Score=27.97 Aligned_cols=27 Identities=22% Similarity=0.596 Sum_probs=21.7
Q ss_pred ccccCCCCCCceecCCCCceeecccccc
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRS 31 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~ 31 (269)
+.-.|..|++...+-.+ ..|||..|..
T Consensus 20 v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~ 46 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK-EVIRCRECGH 46 (63)
T ss_dssp CCCBCSSSCCBCCCCSS-SCCCCSSSCC
T ss_pred eEEECCCCCCeeecCCC-CceECCCCCc
Confidence 44569999999888865 5799999964
No 37
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=56.54 E-value=34 Score=30.13 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
.-...+++.|.+.+|.+.+++.+++.. ..+.+..++..+ +++||.|++.--+|-
T Consensus 44 ~~~~~l~~~la~~~g~~~~~~~~~~~s--------~t~al~~~~~~l---~~~gd~Vl~~~~~~~ 97 (416)
T 3isl_A 44 GIMNETMEMLRELFQTKNRWAYPIDGT--------SRAGIEAVLASV---IEPEDDVLIPIYGRF 97 (416)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEEESC--------HHHHHHHHHHHH---CCTTCEEEEEESSHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCc--------HHHHHHHHHHHh---cCCCCEEEEecCCcc
Confidence 346678888888889887766656653 345666666655 679999888765543
No 38
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=55.96 E-value=41 Score=29.74 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=27.5
Q ss_pred HHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 126 MWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 126 m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
.++.|.+.+|.+.++|.+ ++ ..+.+..++..+ +++||.|++---+|+
T Consensus 76 ~~~~la~~~g~~~~~i~~-~s---------Gt~a~~~~~~~~---~~~gd~vl~~~~~~~ 122 (417)
T 3n0l_A 76 AIERCKKLFNCKFANVQP-NS---------GSQANQGVYAAL---INPGDKILGMDLSHG 122 (417)
T ss_dssp HHHHHHHHHTCSEEECCC-SS---------HHHHHHHHHHHH---SCTTCEEEEECC---
T ss_pred HHHHHHHHhCCCCcceEe-cc---------HHHHHHHHHHHh---cCCCCEEEecccccc
Confidence 455676667886655532 22 235566566555 678999887655554
No 39
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=53.17 E-value=40 Score=31.87 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCceEEEEEeeCC-CCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCC
Q 024329 97 YGRKKALLCGVTY-NDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGD 175 (269)
Q Consensus 97 ~~~k~ALlIGInY-~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD 175 (269)
.=++++++|+=.- .....+-.....+.+.+++.+. .+++- +|..+.+.+ ++.++|.++|+ + .
T Consensus 140 ~Wr~~~l~ia~~~~~~~~d~G~~~~~~~~~~~~~~~-~~~~~--~v~k~ydp~------~~~~~I~~~ln---~-----G 202 (435)
T 1cvr_A 140 KWLGQALCIASAEGGPSADNGESDIQHENVIANLLT-QYGYT--KIIKCYDPG------VTPKNIIDAFN---G-----G 202 (435)
T ss_dssp TTTTEEEEEECSCBCTTSGGGCBHHHHHHHHHHHHH-HHTCS--EEEEEESSS------CCHHHHHHHHH---H-----C
T ss_pred chhceEEEEecCCCCcccccchhhhhHHHHHHhhhh-cCCcc--eeEEecCCc------cCHHHHHHHHh---C-----C
Confidence 3467888887431 1100100122345556666664 34542 344444543 56666766553 2 3
Q ss_pred EEEEEEecccccc
Q 024329 176 SLVFHYSGHGSRQ 188 (269)
Q Consensus 176 ~lvfYFSGHG~~~ 188 (269)
.+++.|.|||...
T Consensus 203 ~~ivnY~GHG~~~ 215 (435)
T 1cvr_A 203 ISLVNYTGHGSET 215 (435)
T ss_dssp CSEEEEESCBCSS
T ss_pred CeEEEEecCCCcc
Confidence 4677888999863
No 40
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=49.37 E-value=97 Score=27.14 Aligned_cols=57 Identities=5% Similarity=-0.014 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 120 INDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 120 ~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
......+++.|.+.+|.++++|.+ +.. +.+.|..++..+....++||.|++---+|.
T Consensus 68 ~~~~~~l~~~la~~~g~~~~~v~~-~~g--------~t~al~~~~~~l~~~~~~gd~vi~~~~~~~ 124 (406)
T 3cai_A 68 AAVLDAAREAVADLVNADPGGVVL-GAD--------RAVLLSLLAEASSSRAGLGYEVIVSRLDDE 124 (406)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEE-ESC--------HHHHHHHHHHHTGGGGBTTCEEEEETTSCG
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEE-eCC--------hHHHHHHHHHHHhhccCCCCEEEEcCCccH
Confidence 345677888888778987777755 432 335555555555334678998887544444
No 41
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=48.73 E-value=7.5 Score=28.80 Aligned_cols=29 Identities=21% Similarity=0.537 Sum_probs=0.0
Q ss_pred ccccCCCCCC-ceecCCCCceeecccccce
Q 024329 4 RVERCSGCGR-QLWLPPQAVAARCYACRSV 32 (269)
Q Consensus 4 ~~~~c~~c~~-~~~~~~~~~~~~c~~c~~~ 32 (269)
|.|.|.+|.. ......-...|.|..|..+
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCE
No 42
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=48.61 E-value=82 Score=26.80 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 024329 118 GSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~ 187 (269)
|...-.+.++++|.+.+|.+.++|.+ +.. ..+.+..+++.+ .++||.|++.=-+|...
T Consensus 46 g~~~~~~~~~~~l~~~~g~~~~~v~~-~~g--------~t~a~~~~~~~~---~~~gd~vl~~~~~~~~~ 103 (359)
T 1svv_A 46 GQDSHCAKAARLIGELLERPDADVHF-ISG--------GTQTNLIACSLA---LRPWEAVIATQLGHIST 103 (359)
T ss_dssp TCSHHHHHHHHHHHHHHTCTTSEEEE-ESC--------HHHHHHHHHHHH---CCTTEEEEEETTSHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCCccEEE-eCC--------chHHHHHHHHHH---hCCCCEEEEcccchHHH
Confidence 33455677888888778987777655 432 345566666655 45889888764455443
No 43
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=47.91 E-value=9 Score=39.03 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=28.4
Q ss_pred ccccCCCCCCce----ecCCCCceeecccccceeeccCC
Q 024329 4 RVERCSGCGRQL----WLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 4 ~~~~c~~c~~~~----~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
..+||.+|++.+ ++-.+.+..+|.+|...+.+...
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 135 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPF 135 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGG
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchH
Confidence 468999999964 44567789999999999998754
No 44
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=47.76 E-value=1.3e+02 Score=25.65 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 024329 120 INDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 120 ~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~ 187 (269)
......+++.|.+.+|.+.++|.+... +.+.+..++..+ +++||.|++--.+|...
T Consensus 50 ~~~~~~l~~~la~~~~~~~~~i~~~~g---------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~~ 105 (354)
T 3ly1_A 50 KNEILMLGNKLAAHHQVEAPSILLTAG---------SSEGIRAAIEAY---ASLEAQLVIPELTYGDG 105 (354)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEESSSCTHH
T ss_pred CCchHHHHHHHHHHhCCChHHEEEeCC---------hHHHHHHHHHHH---hCCCCeEEECCCCchHH
Confidence 345677888888888988788765433 345555555554 47899988776666543
No 45
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=47.63 E-value=1.1e+02 Score=26.37 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhCC-CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 123 VKSMWFLLVRMLGF-PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 123 A~~m~~~L~~~~Gf-~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
...+++.|.+.+|. +.++|.+... +.+.+..+++.+ +++||.|++---+|..
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~~g---------~t~a~~~~~~~~---~~~gd~Vl~~~~~~~~ 121 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLGNG---------SDEIISMLALAA---ARPGAKVMAPVPGFVM 121 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEEH---------HHHHHHHHHHHT---CCTTCEEEEEESCSCC
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCC---------HHHHHHHHHHHH---cCCCCEEEEcCCCHHH
Confidence 35677778777788 5566655332 344444444444 5789988876555544
No 46
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=46.52 E-value=10 Score=38.68 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=28.7
Q ss_pred ccccCCCCCCce----ecCCCCceeecccccceeeccCC
Q 024329 4 RVERCSGCGRQL----WLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 4 ~~~~c~~c~~~~----~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
..+||.+|++.+ ++-.+.+..+|..|...+.+...
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 468999999964 44457789999999999998865
No 47
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=46.49 E-value=41 Score=32.14 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCccHHHHHHH--HHHHHHhCCCCCEEEEEEecccccc
Q 024329 153 RIPTKQNIRTA--MRWLAQDCQPGDSLVFHYSGHGSRQ 188 (269)
Q Consensus 153 ~~pTk~nI~~a--L~~L~~~~~~gD~lvfYFSGHG~~~ 188 (269)
..|+...+..+ +.+++++++++|.|+|..||=|+-.
T Consensus 99 PvPD~~s~~Aa~~il~~~~~l~~~Dlvl~LISGGGSAL 136 (440)
T 1x3l_A 99 PIPDEKSILGAKEALSILNRARENDIVFILISGGGSAL 136 (440)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCCTTSEEEEEECTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCEEEEEecCcHHHh
Confidence 45777766654 5688899999999999999988864
No 48
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=46.35 E-value=92 Score=26.79 Aligned_cols=59 Identities=14% Similarity=-0.026 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh----------CCCCCEEEEEEeccccc
Q 024329 120 INDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD----------CQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 120 ~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~----------~~~gD~lvfYFSGHG~~ 187 (269)
..-...+++.|.+.+|.+.++|.+ ++. ..+.+..++..+... .++||.|++--.+|...
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~-~~g--------gt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~ 136 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHI-VSG--------GTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSF 136 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEE-ESC--------HHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEE-ecC--------cHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHH
Confidence 333446778888778998877754 442 345566666655543 34689999888788754
No 49
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=46.33 E-value=11 Score=38.68 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=28.3
Q ss_pred cccCCCCCCce----ecCCCCceeecccccceeeccCC
Q 024329 5 VERCSGCGRQL----WLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 5 ~~~c~~c~~~~----~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
.++|.+|++.+ .+-.+.+..+|..|...+.+...
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~~ 149 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQ 149 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCGG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCchh
Confidence 68999999964 56678889999999999988643
No 50
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=46.15 E-value=8.9 Score=28.65 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=20.4
Q ss_pred ccccCCCCCCc-eecCCCCceeecccccce
Q 024329 4 RVERCSGCGRQ-LWLPPQAVAARCYACRSV 32 (269)
Q Consensus 4 ~~~~c~~c~~~-~~~~~~~~~~~c~~c~~~ 32 (269)
|.|.|.+|... ...-.-...|.|..|..+
T Consensus 35 m~VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EEEECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred eEEECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 45778888874 555666678888888644
No 51
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=45.98 E-value=27 Score=30.18 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH-hCCCCCEEEEE
Q 024329 120 INDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ-DCQPGDSLVFH 180 (269)
Q Consensus 120 ~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~-~~~~gD~lvfY 180 (269)
..-.+.+++.|.+.+|.+.++|.+ ++. ..+.+..++..+.. ..++||.|++-
T Consensus 42 ~~~~~~~~~~la~~~~~~~~~i~~-~~g--------~~~a~~~~~~~~~~~~~~~gd~vi~~ 94 (382)
T 4hvk_A 42 REAVQEAREKVAKLVNGGGGTVVF-TSG--------ATEANNLAIIGYAMRNARKGKHILVS 94 (382)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEE-ESS--------HHHHHHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcCeEEE-ECC--------chHHHHHHHHHhhhhhcCCCCEEEEC
Confidence 344557788887778987777655 432 34555555555542 22589998883
No 52
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=45.97 E-value=12 Score=23.11 Aligned_cols=31 Identities=19% Similarity=0.562 Sum_probs=24.0
Q ss_pred ccCCCCCCc---eecCCCCceeecccccceeecc
Q 024329 6 ERCSGCGRQ---LWLPPQAVAARCYACRSVTSFP 36 (269)
Q Consensus 6 ~~c~~c~~~---~~~~~~~~~~~c~~c~~~~~~~ 36 (269)
|-|+.|+.+ |..-.+.-..+|..|.+.+.|.
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEEEC
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCccccc
Confidence 569999975 5665566788999999888774
No 53
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=45.52 E-value=17 Score=25.80 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=29.3
Q ss_pred ccccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
....|..|+.+|.+-.......|..|...-.|...
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAYPIRDG 41 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEEEEETT
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEecCcCC
Confidence 34679999999999888888999999887777753
No 54
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=45.33 E-value=11 Score=39.25 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=28.2
Q ss_pred cccCCCCCCce----ecCCCCceeecccccceeeccCC
Q 024329 5 VERCSGCGRQL----WLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 5 ~~~c~~c~~~~----~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
.+||.+|++.+ .+-.+.+..+|.+|...+.+...
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~~ 265 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQ 265 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCchh
Confidence 68999999964 55678889999999999988643
No 55
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=44.15 E-value=8.1 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=23.7
Q ss_pred ccCCCCCCceecCCCCceeecccccce
Q 024329 6 ERCSGCGRQLWLPPQAVAARCYACRSV 32 (269)
Q Consensus 6 ~~c~~c~~~~~~~~~~~~~~c~~c~~~ 32 (269)
-.|+.|+..+..-++.....|..|..+
T Consensus 28 y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred CcCCCCCCcceeccCCCeEECCCCCCE
Confidence 359999999999999999999999753
No 56
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=44.10 E-value=14 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.545 Sum_probs=22.7
Q ss_pred ccccCCCCCCceecCCCCceeecccccce
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSV 32 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~ 32 (269)
....|+.|+..+.+......+.|..|.-.
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 34569999998777766679999999643
No 57
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=43.24 E-value=14 Score=27.17 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=17.4
Q ss_pred ccccCCCCCCceecCCCCceeecccccce
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSV 32 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~ 32 (269)
|...|..|++.|.- ..+..+|..|++-
T Consensus 1 M~~~CP~C~~~l~~--~~~~~~C~~C~~~ 27 (81)
T 2jrp_A 1 MEITCPVCHHALER--NGDTAHCETCAKD 27 (81)
T ss_dssp CCCCCSSSCSCCEE--CSSEEECTTTCCE
T ss_pred CCCCCCCCCCcccc--CCCceECcccccc
Confidence 34678888777653 4456677777653
No 58
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=43.09 E-value=18 Score=25.79 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=29.4
Q ss_pred ccccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
....|..|+.+|.+-.......|..|...-.|...
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDG 41 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEEEETT
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCceecCCCC
Confidence 35679999999999888888999999888777753
No 59
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=43.08 E-value=14 Score=37.50 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=27.0
Q ss_pred ccccCCCCCCce----ecCCCCceeecccccceeeccCC
Q 024329 4 RVERCSGCGRQL----WLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 4 ~~~~c~~c~~~~----~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
..+||.+|++.+ ++-.| +..+|..|...+.+...
T Consensus 84 ~p~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~~ 121 (751)
T 3eh1_A 84 TIVRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEE 121 (751)
T ss_dssp CCCBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCGG
T ss_pred CCCcccCccCEeCCceEEecC-CEEEcccccCCCCCCHH
Confidence 358999999963 44344 89999999999988754
No 60
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=42.60 E-value=76 Score=27.72 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhCCCCc-ceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 121 NDVKSMWFLLVRMLGFPSD-CVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~-~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
.-.+.+++.|.+.+|.+.+ +|.+ +.. ..+.+..++..+ +++||.|++.=-+|..
T Consensus 67 ~~~~~~~~~la~~~g~~~~~~v~~-t~g--------~t~al~~~~~~~---~~~gd~Vl~~~~~~~~ 121 (393)
T 1vjo_A 67 ALMDEIQSLLRYVWQTENPLTIAV-SGT--------GTAAMEATIANA---VEPGDVVLIGVAGYFG 121 (393)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEE-SSC--------HHHHHHHHHHHH---CCTTCEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEE-eCc--------hHHHHHHHHHhc---cCCCCEEEEEcCChhH
Confidence 4456788888777898766 6654 432 345566666655 5689988876555543
No 61
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=42.58 E-value=12 Score=24.98 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=17.0
Q ss_pred ccCCCCCCceecCC--CCceeeccccc
Q 024329 6 ERCSGCGRQLWLPP--QAVAARCYACR 30 (269)
Q Consensus 6 ~~c~~c~~~~~~~~--~~~~~~c~~c~ 30 (269)
-.|.+||+.+..-. --..|+|..|.
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCG 30 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCG 30 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccC
Confidence 36999998655432 22578999995
No 62
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=42.33 E-value=18 Score=25.65 Aligned_cols=35 Identities=6% Similarity=-0.005 Sum_probs=29.2
Q ss_pred ccccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
....|..|+.+|.+-.......|..|...-.|...
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDG 41 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecCCCC
Confidence 35679999999999888888999999887777753
No 63
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=41.93 E-value=16 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=28.8
Q ss_pred cccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329 5 VERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
...|..|+.+|.+-.......|..|...-.|...
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDG 41 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCCCC
Confidence 4579999999999888888999999887777753
No 64
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=41.67 E-value=1.7e+02 Score=25.32 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHHhhCC--CCc-ceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 118 GSINDVKSMWFLLVRMLGF--PSD-CVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~Gf--~~~-~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
|...=.+.++++|.+.+|+ +.+ +|.+ +.. ..+.+..+++.+ +++||.|++.--+|..
T Consensus 68 g~~~l~~~la~~l~~~~g~~~~~~~~v~~-~~g--------~~~a~~~~~~~~---~~~gd~vl~~~p~~~~ 127 (386)
T 1u08_A 68 GVQALREAIAQKTERLYGYQPDADSDITV-TAG--------ATEALYAAITAL---VRNGDEVICFDPSYDS 127 (386)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCTTTTEEE-ESS--------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCEEE-cCC--------hHHHHHHHHHHh---CCCCCEEEEeCCCchh
Confidence 3444445677777766675 455 6654 432 345565566555 5689988887666654
No 65
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=41.01 E-value=9.5 Score=27.26 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=19.8
Q ss_pred cccCCCCCCceecCCCCceeecccccc
Q 024329 5 VERCSGCGRQLWLPPQAVAARCYACRS 31 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~ 31 (269)
.-.|..|+..+.+-.+ ..++|..|..
T Consensus 28 ~Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp CEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EEECCCCCCcceeCCC-CCccCCCCCc
Confidence 3469999998777644 4679999985
No 66
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=39.57 E-value=73 Score=27.68 Aligned_cols=55 Identities=13% Similarity=0.075 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHhhC--CCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 119 SINDVKSMWFLLVRMLG--FPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 119 ~~nDA~~m~~~L~~~~G--f~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
...-.+.++++|.+.+| ...++|.+ ++. +.+.+..++..+ +++||.|++.--+|.
T Consensus 69 ~~~~~~~l~~~l~~~~g~~~~~~~v~~-~~g--------~~~a~~~~~~~~---~~~gd~vl~~~~~~~ 125 (391)
T 4dq6_A 69 PDSYNESIVNWLYRRHNWKIKSEWLIY-SPG--------VIPAISLLINEL---TKANDKIMIQEPVYS 125 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEE-ESC--------HHHHHHHHHHHH---SCTTCEEEECSSCCT
T ss_pred CHHHHHHHHHHHHHHhCCCCcHHHeEE-cCC--------hHHHHHHHHHHh---CCCCCEEEEcCCCCH
Confidence 34556678888887788 66777755 432 455566666655 568999887554444
No 67
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=39.42 E-value=99 Score=22.29 Aligned_cols=52 Identities=17% Similarity=-0.027 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCC-CCEEEEEEec
Q 024329 123 VKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQP-GDSLVFHYSG 183 (269)
Q Consensus 123 A~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~-gD~lvfYFSG 183 (269)
...+++.|. .||...++-...-+ -|..++.+-...|.+-..+ .|+|.||..+
T Consensus 14 ~~kv~k~l~-~yg~rvQ~SVFeg~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~ 66 (85)
T 2i0x_A 14 VNKVKKFLR-MHLNWVQNSVFEGE--------VTLAEFERIKEGLKKIIDENSDSVIIYKLR 66 (85)
T ss_dssp HHHHHHHHT-TTSEEEETTEEEEE--------CCHHHHHHHHHHHHHSSCTTTCEEEEEEES
T ss_pred HHHHHHHHH-HhCcccceeEEEEE--------CCHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 455777775 46654333222122 3566665544555555554 6999999999
No 68
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=39.24 E-value=91 Score=27.61 Aligned_cols=56 Identities=11% Similarity=-0.057 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCC-cceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecc
Q 024329 117 TGSINDVKSMWFLLVRMLGFPS-DCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 117 ~g~~nDA~~m~~~L~~~~Gf~~-~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGH 184 (269)
.|...=.+.++++|....+... ++|.+ +.. ..+.|..++..+ +++||.|++-=.+|
T Consensus 80 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~-t~g--------~~~al~~~~~~l---~~~gd~Vl~~~p~~ 136 (418)
T 3rq1_A 80 AGIPDFLCAAEKECFGNFRPEGHIRSIA-TAG--------GTGGIHHLIHNY---TEPGDEVLTADWYW 136 (418)
T ss_dssp TCCHHHHHHHHHHHHGGGCCSSEEEEEE-ESH--------HHHHHHHHHHHH---SCTTCEEEEESSCC
T ss_pred CChHHHHHHHHHHHhcccCccccccEEE-CCc--------hHHHHHHHHHHh---cCCCCEEEECCCCc
Confidence 3443434556676654444321 14543 432 345555555544 57899988854444
No 69
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=39.06 E-value=1.4e+02 Score=25.57 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 123 VKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 123 A~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
...+++.|.+.+|.+.++|.+... +.+.+..++..+ +++||.|++---+|..
T Consensus 69 ~~~lr~~la~~~~~~~~~v~~~~g---------~t~a~~~~~~~~---~~~gd~vl~~~~~~~~ 120 (363)
T 3ffh_A 69 ASSLRKEVADFYQLEEEELIFTAG---------VDELIELLTRVL---LDTTTNTVMATPTFVQ 120 (363)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEESS---------HHHHHHHHHHHH---CSTTCEEEEEESSCHH
T ss_pred hHHHHHHHHHHhCCChhhEEEeCC---------HHHHHHHHHHHH---ccCCCEEEEcCCChHH
Confidence 456788888778888788755333 345555555555 5689988876555543
No 70
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=38.96 E-value=50 Score=29.25 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-CCCCEEEEEEecc
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-QPGDSLVFHYSGH 184 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~~gD~lvfYFSGH 184 (269)
.-...+++.|.+.+|.+.++|.+... ..+.+..++..+.+.. ++||.|++.--.|
T Consensus 68 ~~~~~l~~~la~~~~~~~~~v~~~~g---------gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~ 123 (423)
T 3lvm_A 68 EAVDIARNQIADLVGADPREIVFTSG---------ATESDNLAIKGAANFYQKKGKHIITSKTEH 123 (423)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEESS---------HHHHHHHHHHHHHHHHTTTCCEEEEETTSC
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEeCC---------hHHHHHHHHHHHHHhhccCCCEEEECCccc
Confidence 44567888888878998778765433 3455666666665432 3689988754444
No 71
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=38.80 E-value=16 Score=32.20 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=24.0
Q ss_pred ccCCCCCCceecCCCCceeecccccceee
Q 024329 6 ERCSGCGRQLWLPPQAVAARCYACRSVTS 34 (269)
Q Consensus 6 ~~c~~c~~~~~~~~~~~~~~c~~c~~~~~ 34 (269)
-.|+.||+++....+....+|..|..+..
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCEEC
T ss_pred CccccCCCcCccCCCceeeeCCCCCCEec
Confidence 46999999998888888899999975543
No 72
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=38.42 E-value=58 Score=28.14 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CCCCCEEEEE
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQPGDSLVFH 180 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~~gD~lvfY 180 (269)
.-...+++.|.+.+|.+.++|.+ +.. ..+.+..++..+.+. .++||.|++-
T Consensus 43 ~~~~~l~~~la~~~g~~~~~v~~-~~g--------~t~a~~~~~~~l~~~~~~~gd~Vl~~ 94 (382)
T 4eb5_A 43 EAVQEAREKVAKLVNGGGGTVVF-TSG--------ATEANNLAIIGYAMRNARKGKHILVS 94 (382)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEE-ESS--------HHHHHHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEE-cCc--------hHHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45667888888778987667654 432 345555566655422 2578988774
No 73
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=37.99 E-value=1.2e+02 Score=26.54 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHHhhCC--CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 118 GSINDVKSMWFLLVRMLGF--PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~Gf--~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
+...=-+.++++|.+.+|. +.++|.+... ..+.+..++..+ +++||.|++-=-+|..
T Consensus 79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g---------~t~al~~~~~~l---~~~gd~Vl~~~~~~~~ 137 (389)
T 1o4s_A 79 GIYELREGIAKRIGERYKKDISPDQVVVTNG---------AKQALFNAFMAL---LDPGDEVIVFSPVWVS 137 (389)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHEEEecC---------HHHHHHHHHHHh---CCCCCEEEEcCCCchh
Confidence 3333345577777666676 5667755332 345555555555 5689988877555543
No 74
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=37.91 E-value=18 Score=29.00 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=14.9
Q ss_pred HHHhCCCCCEEEEEEecc
Q 024329 167 LAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 167 L~~~~~~gD~lvfYFSGH 184 (269)
..+..++||.+|||-|+-
T Consensus 31 ~lr~mk~GD~~~fYhs~~ 48 (145)
T 2hd9_A 31 TLSRVKPGDKLVIYVRQE 48 (145)
T ss_dssp HHTTCCTTCEEEEEECCE
T ss_pred HHHhCCCCCEEEEEEccc
Confidence 445789999999999964
No 75
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=37.40 E-value=2e+02 Score=24.68 Aligned_cols=54 Identities=9% Similarity=0.039 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhCCC-CcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 120 INDVKSMWFLLVRMLGFP-SDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 120 ~nDA~~m~~~L~~~~Gf~-~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
..-.+.+++.|.+.+|.+ .++|. ++.. ..+.+..++..+ +++||.|++.=-+|.
T Consensus 52 ~~~~~~~~~~la~~~g~~~~~~v~-~~~g--------~t~a~~~~~~~l---~~~gd~vl~~~~~~~ 106 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVEKGEVLL-VPSS--------GTGIMEASIRNG---VSKGGKVLVTIIGAF 106 (386)
T ss_dssp HHHHHHHHHHHHHHHTCSSSEEEE-ESSC--------HHHHHHHHHHHH---SCTTCEEEEEESSHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEE-EeCC--------hHHHHHHHHHHh---hcCCCeEEEEcCCch
Confidence 455667888888778987 44454 4442 345566666655 568998887655554
No 76
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=37.17 E-value=95 Score=26.70 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhCCCC--cceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecc
Q 024329 121 NDVKSMWFLLVRMLGFPS--DCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~--~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGH 184 (269)
.-...+++.|.+.+|.+. ++|.+ ++. ..+.+. ++..+ +++||.|++.--+|
T Consensus 35 ~~~~~~~~~la~~~~~~~~~~~v~~-~~g--------~t~al~-~~~~~---~~~gd~vi~~~~~~ 87 (384)
T 3zrp_A 35 EALAYSLKGLRYVMGASKNYQPLII-PGG--------GTSAME-SVTSL---LKPNDKILVVSNGV 87 (384)
T ss_dssp HHHHHHHHHHHHHHTCCTTSEEEEE-ESC--------HHHHHH-HGGGG---CCTTCEEEEECSSH
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEE-cCC--------cHHHHH-HHHhh---cCCCCEEEEecCCc
Confidence 445667888887789876 66654 442 344455 55444 57899887754443
No 77
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=37.11 E-value=1.9e+02 Score=24.77 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecc
Q 024329 122 DVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 122 DA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGH 184 (269)
-...+++.|.+.+|.+..+-.+++... .+.+..++..+ .++||.|++.--+|
T Consensus 57 ~~~~l~~~la~~~~~~~~~~v~~~~gg--------~~al~~~~~~~---~~~gd~vl~~~~~~ 108 (393)
T 3kgw_A 57 IMEEIKQGIQYVFQTRNPLTLVVSGSG--------HCAMETALFNL---LEPGDSFLTGTNGI 108 (393)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEESCCT--------TTHHHHHHHHH---CCTTCEEEEEESSH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCc--------HHHHHHHHHhc---CCCCCEEEEEeCCc
Confidence 345678888877888765433445432 34455556555 67899888764443
No 78
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=36.86 E-value=1.6e+02 Score=25.59 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHHHhhC--CCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCC-CEEEEEEecccc
Q 024329 117 TGSINDVKSMWFLLVRMLG--FPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPG-DSLVFHYSGHGS 186 (269)
Q Consensus 117 ~g~~nDA~~m~~~L~~~~G--f~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~g-D~lvfYFSGHG~ 186 (269)
.|...=.+.++++|.+.+| .+.++|.+ +.. ..+.|..+++.+ +++| |.|++---+|..
T Consensus 76 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~-~~g--------~~~al~~~~~~l---~~~g~d~vl~~~p~~~~ 136 (398)
T 3ele_A 76 QGDVETRAAIAEFLNNTHGTHFNADNLYM-TMG--------AAASLSICFRAL---TSDAYDEFITIAPYFPE 136 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEE-ESS--------HHHHHHHHHHHH---CCSTTCEEEEESSCCTH
T ss_pred CCcHHHHHHHHHHHHHHhCCCCChHHEEE-ccC--------HHHHHHHHHHHH---cCCCCCEEEEeCCCchh
Confidence 3434445667888877677 45677754 432 345566566555 5789 998876555543
No 79
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=36.53 E-value=1.8e+02 Score=25.91 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhC----CCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 024329 121 NDVKSMWFLLVRMLG----FPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 121 nDA~~m~~~L~~~~G----f~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~ 187 (269)
.=.+.+++++.+.+| .+.++|.+... ..+.+..++..+ +++||.|++-=-+|+..
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~~v~~~~g---------g~~a~~~~~~~l---~~~gd~vl~~~p~~~~~ 148 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAG---------ATSANETFIFCL---ADPGEAVLIPTPYYPGF 148 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGGGEEEEEH---------HHHHHHHHHHHH---CCTTCEEEEEESCCTTH
T ss_pred HHHHHHHHHHHHhhCCCCCCCHHHEEEcCC---------hHHHHHHHHHHh---cCCCCeEEECCCccccH
Confidence 334445566654333 45677755433 334455555544 46899998877777654
No 80
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=35.36 E-value=2.4e+02 Score=24.98 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhC----CCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 024329 121 NDVKSMWFLLVRMLG----FPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 121 nDA~~m~~~L~~~~G----f~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~ 187 (269)
.=.+.+++++.+.+| .+.++|.+-.. +.+.|..++..+ +++||.|++.--+|+..
T Consensus 87 ~lr~~la~~~~~~~g~~~~~~~~~i~~~~G---------~~~ai~~~~~~~---~~~gd~Vl~~~p~y~~~ 145 (428)
T 1iay_A 87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGG---------ATGANETIIFCL---ADPGDAFLVPSPYYPAF 145 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTTSCEEEEH---------HHHHHHHHHHHH---CCTTCEEEEESSCCTTH
T ss_pred HHHHHHHHHHHHhcCCCCCCChhhEEEccC---------hHHHHHHHHHHh---CCCCCeEEEccCCCcch
Confidence 334456667765566 44667754332 345555555554 46899888875555543
No 81
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=35.04 E-value=1.5e+02 Score=25.83 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHHhhCCC--C-cceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 118 GSINDVKSMWFLLVRMLGFP--S-DCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~Gf~--~-~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
|...=.+.++++|.+.+|.+ + ++|.+ +.. ..+.+..++..+ +++||.|++-=-+|..
T Consensus 79 g~~~l~~~l~~~l~~~~g~~~~~~~~i~~-~~g--------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~ 138 (407)
T 3nra_A 79 GDLGIRDLLAPRLAAFTGAPVDARDGLII-TPG--------TQGALFLAVAAT---VARGDKVAIVQPDYFA 138 (407)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEE-ESH--------HHHHHHHHHHTT---CCTTCEEEEEESCCTH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEE-eCC--------cHHHHHHHHHHh---CCCCCEEEEcCCcccc
Confidence 44444556777887667874 2 56655 332 334444444433 5789998886666643
No 82
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=35.03 E-value=1.5e+02 Score=25.80 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHHhhCC--CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 118 GSINDVKSMWFLLVRMLGF--PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~Gf--~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
|...=-+.++++|.+.+|+ +.++|.+... ..+.|..+++.+ +++||.|++.=-+|.
T Consensus 68 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---------~~~a~~~~~~~~---~~~gd~vl~~~~~~~ 125 (388)
T 1j32_A 68 GEPRLREAIAQKLQRDNGLCYGADNILVTNG---------GKQSIFNLMLAM---IEPGDEVIIPAPFWV 125 (388)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEESSCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcCC---------HHHHHHHHHHHh---cCCCCEEEEcCCCCh
Confidence 3444445677888766675 4566655332 345566666655 568998887655553
No 83
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=34.85 E-value=1.6e+02 Score=25.56 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhCCCCc-ceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 024329 121 NDVKSMWFLLVRMLGFPSD-CVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~-~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~ 187 (269)
.....+++.|.+.+|.+.+ +|.+ +.. ..+.+..++..+ +++||.|++.=-+|...
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~-~~g--------~t~al~~~~~~~---~~~gd~vl~~~~~~~~~ 106 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCV-SGS--------AHAGMEAMLSNL---LEEGDRVLIAVNGIWAE 106 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEE-SSC--------HHHHHHHHHHHH---CCTTCEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEE-CCc--------HHHHHHHHHHHh---cCCCCeEEEEcCCcccH
Confidence 4477888888888898776 5644 442 345555556555 57899888875555543
No 84
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=34.48 E-value=75 Score=27.94 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhC--CCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecc
Q 024329 120 INDVKSMWFLLVRMLG--FPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 120 ~nDA~~m~~~L~~~~G--f~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGH 184 (269)
..=-+.+++++.+.+| .+.++|.+ +.. ..+.+..+++.+ +++||.|++.--+|
T Consensus 78 ~~l~~~la~~~~~~~g~~~~~~~v~~-t~g--------~t~a~~~~~~~~---~~~gd~vl~~~p~~ 132 (407)
T 2zc0_A 78 PELREELAAFLKKYDHLEVSPENIVI-TIG--------GTGALDLLGRVL---IDPGDVVITENPSY 132 (407)
T ss_dssp HHHHHHHHHHHHHHSCCCCCGGGEEE-ESH--------HHHHHHHHHHHH---CCTTCEEEEEESCC
T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEE-ecC--------HHHHHHHHHHHh---cCCCCEEEEeCCCh
Confidence 3434557777765567 45667654 332 345555555555 46889887765444
No 85
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=34.44 E-value=81 Score=27.75 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecc
Q 024329 125 SMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 125 ~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGH 184 (269)
.+++.|.+.+|.+.++|.+ +.. +.+.|..+++.+ .++||.|++.--+|
T Consensus 78 ~l~~~la~~~g~~~~~v~~-~~g--------~~~al~~~~~~~---~~~gd~Vl~~~p~y 125 (397)
T 2zyj_A 78 PLRAFVAEWIGVRPEEVLI-TTG--------SQQALDLVGKVF---LDEGSPVLLEAPSY 125 (397)
T ss_dssp HHHHHHHHHHTSCGGGEEE-ESH--------HHHHHHHHHHHH---CCTTCEEEEEESCC
T ss_pred HHHHHHHHHhCCChhhEEE-ecc--------HHHHHHHHHHHh---CCCCCEEEEeCCCc
Confidence 3555665555776677754 332 345555566555 46889887754444
No 86
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=34.39 E-value=27 Score=23.96 Aligned_cols=31 Identities=26% Similarity=0.635 Sum_probs=25.3
Q ss_pred ccccCCCCCCceecCCCCceeecccccceeecc
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSVTSFP 36 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~ 36 (269)
+...|..|+..++ -|....+|..|.-+.+..
T Consensus 18 ~~~~C~~Cg~~i~--~gkq~~kC~dC~~~cH~~ 48 (61)
T 4b6d_A 18 KPESCVPCGKRIK--FGKLSLKCRDCRVVSHPE 48 (61)
T ss_dssp SCEECTTTCCEEC--TTCEEEEESSSSCEECGG
T ss_pred CCcccccccCEEE--EeeEeeECCCCCCeEchh
Confidence 4567999998776 588999999998777665
No 87
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=34.33 E-value=58 Score=28.34 Aligned_cols=55 Identities=15% Similarity=0.052 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhC--CCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 120 INDVKSMWFLLVRMLG--FPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 120 ~nDA~~m~~~L~~~~G--f~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
..-.+.++++|.+.+| .+.++|.+ ++. ..+.+..++..+ +++||.|++---+|..
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~-~~g--------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~ 121 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVF-ASG--------VVPAISAMVRQF---TSPGDQILVQEPVYNM 121 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEE-ESC--------HHHHHHHHHHHH---SCTTCEEEECSSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEE-CCC--------HHHHHHHHHHHh---CCCCCeEEECCCCcHH
Confidence 3445678888877778 55677755 432 355566666655 5789988876555543
No 88
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=34.06 E-value=1.3e+02 Score=26.83 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhCCCC---------cceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 123 VKSMWFLLVRMLGFPS---------DCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 123 A~~m~~~L~~~~Gf~~---------~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
-+.++++|.+.+|.+. ++|.+ +.. +.+.|..++.-+ +++||.|++-=-+|.
T Consensus 84 r~~ia~~l~~~~g~~~~~~~~~~~~~~i~~-t~G--------~~~al~~~~~~l---~~~gd~Vlv~~p~y~ 143 (425)
T 2r2n_A 84 LSWLKQLQIKLHNPPTIHYPPSQGQMDLCV-TSG--------SQQGLCKVFEMI---INPGDNVLLDEPAYS 143 (425)
T ss_dssp HHHHHHHHHHHHCCTTTTSCGGGTCEEEEE-ESS--------HHHHHHHHHHHH---CCTTCEEEEESSCCH
T ss_pred HHHHHHHHHHhcCCCCccccccCCcCcEEE-eCc--------HHHHHHHHHHHh---CCCCCEEEEeCCCcH
Confidence 4567788876678764 45544 432 345565555555 468999888654543
No 89
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=33.91 E-value=34 Score=30.41 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 024329 155 PTKQNIRTAMRWLAQDCQPGDSLVFHYS 182 (269)
Q Consensus 155 pTk~nI~~aL~~L~~~~~~gD~lvfYFS 182 (269)
-|++.|.+.|+.| ++++||+|++|=|
T Consensus 15 ~t~~~l~~~L~~L--Gi~~Gd~llVHsS 40 (268)
T 3ijw_A 15 NTIKTITNDLRKL--GLKKGMTVIVHSS 40 (268)
T ss_dssp BCHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred cCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 4788888888888 7888888888865
No 90
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=33.87 E-value=1.4e+02 Score=27.16 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhCC-CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecc
Q 024329 123 VKSMWFLLVRMLGF-PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 123 A~~m~~~L~~~~Gf-~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGH 184 (269)
.+.+++++.+.+|. +.++|.+ +.. ..+.|..+++-+ +++||.|++-=-+|
T Consensus 124 r~~ia~~~~~~~g~~~~~~v~~-t~G--------~~~al~~~~~~l---~~~Gd~Vlv~~p~y 174 (448)
T 3aow_A 124 RETLMKWLGKRYGISQDNDIMI-TSG--------SQQALDLIGRVF---LNPGDIVVVEAPTY 174 (448)
T ss_dssp HHHHHHHHHHHHCCCTTSEEEE-ESS--------HHHHHHHHHHHH---CCTTCEEEEEESCC
T ss_pred HHHHHHHHHHhcCcCChhhEEE-eCc--------HHHHHHHHHHHH---cCCCCEEEEeCCCh
Confidence 34566666555688 5667654 432 345555555555 56899888764444
No 91
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=33.77 E-value=26 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.0
Q ss_pred HHHHHhCCCCCEEEEEEec
Q 024329 165 RWLAQDCQPGDSLVFHYSG 183 (269)
Q Consensus 165 ~~L~~~~~~gD~lvfYFSG 183 (269)
+.+.+..+.||.+|||=|+
T Consensus 37 rn~mr~Mk~GD~~ffYHS~ 55 (145)
T 2gbs_A 37 KLHMVAMRRGDRAFYYHSN 55 (145)
T ss_dssp HHHHHHCCTTCEEEEEETT
T ss_pred HHHHHhcCCCCEEEEEEeC
Confidence 3344568999999999887
No 92
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=33.69 E-value=20 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.184 Sum_probs=20.9
Q ss_pred cccCCCCCCceecCCCCceeeccccccee
Q 024329 5 VERCSGCGRQLWLPPQAVAARCYACRSVT 33 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~~~ 33 (269)
...|..|+..+.. ..+..+|..||.+.
T Consensus 2 ~~~Cp~C~~~~~~--~~~~~~C~~~~~~~ 28 (269)
T 1p91_A 2 SFSCPLCHQPLSR--EKNSYICPQRHQFD 28 (269)
T ss_dssp CBBCTTTCCBCEE--ETTEEECTTCCEEE
T ss_pred cccCCCCCcccee--CCCEEECCCCCcCC
Confidence 3679999998866 33578999998664
No 93
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=33.15 E-value=2.6e+02 Score=25.22 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=10.9
Q ss_pred eEEEEEeCCCCCCCCC
Q 024329 232 KLHAIIDSCYSGTVLD 247 (269)
Q Consensus 232 ~l~vIlD~C~SG~~~d 247 (269)
.+++|+|..|++-..+
T Consensus 235 ~~~li~Deay~~~~~~ 250 (448)
T 3meb_A 235 KHIAFFDSAYQGFATG 250 (448)
T ss_dssp TCEEEEEESCTTTSSS
T ss_pred CCEEEEecccccccCC
Confidence 4678888888765543
No 94
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=33.13 E-value=22 Score=22.93 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=20.1
Q ss_pred ccccCCCCCCceecCCCCceeecccccceee
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSVTS 34 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~ 34 (269)
....|..|+..|| ...+|..|.-.-+
T Consensus 13 ~pt~C~~C~~~l~-----qG~~C~~C~~~~H 38 (52)
T 1faq_A 13 KLAFCDICQKFLL-----NGFRCQTCGYKFH 38 (52)
T ss_dssp SCEECTTSSSEEC-----SEEECTTTTCCBC
T ss_pred CCcCCCCcccccc-----cCCEeCCCCCeEC
Confidence 3467999999887 6889999974443
No 95
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.82 E-value=31 Score=24.30 Aligned_cols=35 Identities=9% Similarity=-0.089 Sum_probs=28.6
Q ss_pred ccccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~ 38 (269)
....|..|+.+|.+-.......|..|...-.|...
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccccCCCC
Confidence 34579999999999888888999999877777643
No 96
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=32.56 E-value=1.6e+02 Score=25.27 Aligned_cols=53 Identities=4% Similarity=0.069 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCC--CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 024329 123 VKSMWFLLVRMLGF--PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 123 A~~m~~~L~~~~Gf--~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~ 187 (269)
.+.++++|.+.+|. +.++|.+ +.. ..+.+..+++.+ +++||.|++.--+|...
T Consensus 64 r~~la~~~~~~~~~~~~~~~i~~-t~g--------~~~a~~~~~~~~---~~~gd~vl~~~~~~~~~ 118 (377)
T 3fdb_A 64 SQATAEFYADRYGYQARPEWIFP-IPD--------VVRGLYIAIDHF---TPAQSKVIVPTPAYPPF 118 (377)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEE-ESC--------HHHHHHHHHHHH---SCTTCCEEEEESCCTHH
T ss_pred HHHHHHHHHHHhCCCCCHHHEEE-eCC--------hHHHHHHHHHHh---cCCCCEEEEcCCCcHhH
Confidence 34567777666664 5567655 432 345555555555 56899888876666543
No 97
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=32.45 E-value=92 Score=27.84 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHHhhC---CCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 118 GSINDVKSMWFLLVRMLG---FPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~G---f~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
+...=-+.++++|.+++| .+.++|.+-.. +.+.|..++..+ +++||.|++.--+|.
T Consensus 86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G---------~~~al~~~~~~l---~~~gd~Vl~~~p~y~ 144 (425)
T 1vp4_A 86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVG---------SQQALDLIGKLF---LDDESYCVLDDPAYL 144 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEH---------HHHHHHHHHHHH---CCTTCEEEEEESCCH
T ss_pred CCHHHHHHHHHHHHhccCCCCCCcccEEEecc---------HHHHHHHHHHHh---CCCCCEEEEeCCCcH
Confidence 333334567777766668 45667755332 345555566555 468898887655553
No 98
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=32.06 E-value=38 Score=30.47 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=22.5
Q ss_pred CccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 024329 154 IPTKQNIRTAMRWLAQDCQPGDSLVFHYS 182 (269)
Q Consensus 154 ~pTk~nI~~aL~~L~~~~~~gD~lvfYFS 182 (269)
.-|++.|.+.|+.| ++++||+|++|=|
T Consensus 21 ~~T~~~L~~~L~~L--GI~~Gd~llVHsS 47 (286)
T 3sma_A 21 LVTRDRLASDLAAL--GVRPGGVLLVHAS 47 (286)
T ss_dssp EECHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred CcCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 36888899999888 8889999998864
No 99
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=31.99 E-value=38 Score=30.09 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 024329 155 PTKQNIRTAMRWLAQDCQPGDSLVFHYS 182 (269)
Q Consensus 155 pTk~nI~~aL~~L~~~~~~gD~lvfYFS 182 (269)
-|++.|.+.|+.| ++++||+|++|=|
T Consensus 13 ~T~~~L~~~L~~L--GI~~Gd~llVHsS 38 (273)
T 2nyg_A 13 RTKQSITEDLKAL--GLKKGMTVLVHSS 38 (273)
T ss_dssp BCHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred cCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 5888899999888 8889999998864
No 100
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=31.91 E-value=28 Score=28.68 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=15.2
Q ss_pred HHHHHhCCCCCEEEEEEec
Q 024329 165 RWLAQDCQPGDSLVFHYSG 183 (269)
Q Consensus 165 ~~L~~~~~~gD~lvfYFSG 183 (269)
+.+.+..+.||.+|||=|+
T Consensus 38 rN~mr~Mk~GD~~fFYHS~ 56 (155)
T 1zce_A 38 RNNMRAMKIGDKGFFYHSN 56 (155)
T ss_dssp HHHHHTCCTTCEEEEEETT
T ss_pred HHHHHhccCCCEEEEEEeC
Confidence 3444578999999999887
No 101
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=31.82 E-value=1.1e+02 Score=26.72 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Q 024329 155 PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQK 189 (269)
Q Consensus 155 pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~ 189 (269)
|+-.--..++.++.+...+++.+++.++|||....
T Consensus 266 pssa~alaa~~~~~~~~~~~~~vv~i~tg~g~ky~ 300 (303)
T 1o58_A 266 ISSGANVAAALKVAQKLGPDARVVTVAPDHAERYL 300 (303)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCCEEEEECBBGGGCT
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEECCCCcccc
Confidence 44444455555566666688999999999998753
No 102
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=31.41 E-value=31 Score=28.83 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.2
Q ss_pred HHHHhCCCCCEEEEEEecc
Q 024329 166 WLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 166 ~L~~~~~~gD~lvfYFSGH 184 (269)
.+.+..+.||.+|||-|+.
T Consensus 54 N~mr~Mk~GD~vfFYHS~c 72 (172)
T 2ar1_A 54 NNMRAMSVGDKVLFYHSNT 72 (172)
T ss_dssp HHHHHCCTTCEEEEEECSS
T ss_pred HHHHhcCCCCEEEEEecCC
Confidence 3445789999999999883
No 103
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=31.07 E-value=1.2e+02 Score=26.33 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC
Q 024329 155 PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKD 190 (269)
Q Consensus 155 pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~d 190 (269)
|+-.--..++.++.+...+++.+++..+|||....+
T Consensus 262 pssa~a~aa~~~~~~~~~~~~~vv~i~tg~g~ky~~ 297 (304)
T 1ve1_A 262 MSSGGIVWAALQVARELGPGKRVACISPDGGWKYLS 297 (304)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEECBBSGGGTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEECCCCccCCC
Confidence 444444445555555556789999999999998654
No 104
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=30.87 E-value=33 Score=28.29 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHhCCCCCEEEEEEec
Q 024329 166 WLAQDCQPGDSLVFHYSG 183 (269)
Q Consensus 166 ~L~~~~~~gD~lvfYFSG 183 (269)
.+.+..+.||.+|||-|+
T Consensus 36 N~mr~Mk~GD~~ffYHS~ 53 (157)
T 2eve_A 36 NFLRTMAEGDEFFFYHSS 53 (157)
T ss_dssp HHHHHCCTTCEEEEEECS
T ss_pred HHHHhcCCCCEEEEEecC
Confidence 344578999999999888
No 105
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=30.55 E-value=82 Score=22.92 Aligned_cols=55 Identities=13% Similarity=-0.061 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCC-CCEEEEEEecc
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQP-GDSLVFHYSGH 184 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~-gD~lvfYFSGH 184 (269)
.....+.+.|+ .+|....+-...-+ -|..++.+-...|.+-..+ .|+|.||..+-
T Consensus 16 kr~~kv~k~l~-~yg~rvQ~SVFe~~--------lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~ 71 (90)
T 1zpw_X 16 TRRVKLANLLK-SYGERVQLSVFECY--------LDERLLEDLRRRARRLLDLGQDALRIYPVAG 71 (90)
T ss_dssp HHHHHHHHHHH-TTEEEEETTEEEEE--------ECHHHHHHHHHHHHHHCCTTTCEEEEEECCS
T ss_pred HHHHHHHHHHH-HhCccceEeEEEEE--------cCHHHHHHHHHHHHHhhCCCCCEEEEEEeCC
Confidence 56677888886 46754332222222 2444444433444444555 79999999886
No 106
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.17 E-value=25 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=19.8
Q ss_pred cccCCCCCCceecCCCCceeecccccceeecc
Q 024329 5 VERCSGCGRQLWLPPQAVAARCYACRSVTSFP 36 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~ 36 (269)
..+|+.|++.+.|. .++| .|..+--..
T Consensus 15 ~~rC~~C~kkvgl~----~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKC-KCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTS----CEEC-TTSCEECSS
T ss_pred CCcChhhCCccccc----CeEe-ecCCEeccc
Confidence 45799999987775 5888 787665444
No 107
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=30.16 E-value=24 Score=25.03 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=19.6
Q ss_pred CcccccCCCCCCceecCCCCcee
Q 024329 2 TSRVERCSGCGRQLWLPPQAVAA 24 (269)
Q Consensus 2 ~~~~~~c~~c~~~~~~~~~~~~~ 24 (269)
|...|.|..|++.|.-|.|-++-
T Consensus 23 A~tvV~C~~Cg~~L~~PTGGKA~ 45 (66)
T 1qxf_A 23 PSTIVKCIICGRTVAEPTGGKGN 45 (66)
T ss_dssp CSSCEECSSSCCEEEECCSSSCE
T ss_pred CceEEEcccCCCEEeecCCccee
Confidence 56789999999999999988643
No 108
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=30.14 E-value=1.3e+02 Score=25.94 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=32.1
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 125 SMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 125 ~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
.+++.|.+.+|.+.++|.+... +.+.+..++..+ +++||.|++---+|.
T Consensus 69 ~lr~~la~~~~~~~~~v~~~~g---------~~~a~~~~~~~l---~~~gd~vl~~~~~~~ 117 (365)
T 3get_A 69 ELKSTLAQKYKVQNENIIIGAG---------SDQVIEFAIHSK---LNSKNAFLQAGVTFA 117 (365)
T ss_dssp HHHHHHHHHHTCCGGGEEEESS---------HHHHHHHHHHHH---CCTTCEEEECSSCCT
T ss_pred HHHHHHHHHhCCCcceEEECCC---------HHHHHHHHHHHH---hCCCCEEEEeCCChH
Confidence 5777777777888788765433 445555555555 578999887544443
No 109
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.97 E-value=23 Score=27.36 Aligned_cols=26 Identities=27% Similarity=0.698 Sum_probs=19.5
Q ss_pred cccCCCCCCceecCCCCceeecccccc
Q 024329 5 VERCSGCGRQLWLPPQAVAARCYACRS 31 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~ 31 (269)
..+|..||-.+ ...-....+|..|++
T Consensus 67 p~~C~~CG~~F-~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 67 PAQCRKCGFVF-KAEINIPSRCPKCKS 92 (105)
T ss_dssp CCBBTTTCCBC-CCCSSCCSSCSSSCC
T ss_pred CcChhhCcCee-cccCCCCCCCcCCCC
Confidence 34699999987 444446789999975
No 110
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=29.95 E-value=17 Score=31.01 Aligned_cols=27 Identities=19% Similarity=0.598 Sum_probs=21.8
Q ss_pred ccccCCCCCCceecCCCCc--eeeccccc
Q 024329 4 RVERCSGCGRQLWLPPQAV--AARCYACR 30 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~--~~~c~~c~ 30 (269)
++..|..|+..+.+..... .+-|..|+
T Consensus 133 ~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccCCCCCCCcCCCCC
Confidence 3457999999988887764 89999998
No 111
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=29.55 E-value=2.6e+02 Score=23.75 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHHHHH-HHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 123 VKSMWFL-LVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 123 A~~m~~~-L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
...+++. |.+.+|.+ +|.+ +.. ..+.+..++..+ .++||.|++.=-+|.
T Consensus 55 ~~~l~~~~la~~~~~~--~v~~-~~g--------~t~a~~~~~~~~---~~~gd~vl~~~~~~~ 104 (371)
T 2e7j_A 55 IHDFIHNQLPKFLGCD--VARV-TNG--------AREAKFAVMHSL---AKKDAWVVMDENCHY 104 (371)
T ss_dssp HHHHHHTHHHHHTTSS--EEEE-ESS--------HHHHHHHHHHHH---CCTTCEEEEETTCCH
T ss_pred HHHHHHHHHHHHcCCC--EEEE-eCC--------hHHHHHHHHHHH---hCCCCEEEEccCcch
Confidence 4557777 77777776 5543 432 345566666665 568998887655553
No 112
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=29.03 E-value=2.8e+02 Score=23.86 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEE
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHY 181 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYF 181 (269)
.-...+++.|.+.+|.+.++|.+ +.. ..+.+..++..+ .++||.|++.=
T Consensus 42 ~~~~~l~~~la~~~g~~~~~v~~-t~g--------~t~a~~~~~~~~---~~~gd~Vl~~~ 90 (392)
T 2z9v_A 42 LLYEKVVDKAQKAMRLSNKPVIL-HGE--------PVLGLEAAAASL---ISPDDVVLNLA 90 (392)
T ss_dssp HHHHHHHHHHHHHTTCSSCCEEE-SSC--------THHHHHHHHHHH---CCTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEE-eCC--------chHHHHHHHHHh---cCCCCEEEEec
Confidence 34567888888778987666654 443 345566666555 57899877643
No 113
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=29.02 E-value=2.7e+02 Score=23.68 Aligned_cols=104 Identities=9% Similarity=0.162 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC--CCC---------
Q 024329 125 SMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKD--YNK--------- 193 (269)
Q Consensus 125 ~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~d--~~g--------- 193 (269)
.+++.|.+.+|.++++|.+... +.+.|..+++.+ . ||.|++---+|...... ..|
T Consensus 54 ~lr~~la~~~~~~~~~i~~t~g---------~~~al~~~~~~l----~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~ 119 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNNAILVTNG---------PTAAFYQIAQAF----R-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSN 119 (350)
T ss_dssp HHHHHHHHHTTCCGGGEEEESH---------HHHHHHHHHHHT----T-TCEEEEEESCCHHHHHHHHHTTCEEEEEETT
T ss_pred HHHHHHHHHhCcCHHHEEEcCC---------HHHHHHHHHHHH----C-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecC
Confidence 5788887778888788765332 334444444433 3 88888765554432210 000
Q ss_pred CCCCCCc-----ceeeccCCCCCCC-ChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCC
Q 024329 194 DELDGFD-----ETICPLDHETEGP-IIDDEINATIVRPLPRGAKLHAIIDSCYSGTVL 246 (269)
Q Consensus 194 de~dG~d-----e~L~p~D~~~~g~-I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~ 246 (269)
++.++++ -.+++.=..+.|. ...++|.+++ +... .. ++|+|..|+.-..
T Consensus 120 ~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~-~~~~--~~-~li~Dea~~~~~~ 174 (350)
T 3fkd_A 120 EDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLL-NDHP--DT-TFVLDQSYVSFTT 174 (350)
T ss_dssp SCGGGSCCTTCSEEEEESSCTTTCCCCCHHHHHHHH-HHCT--TS-EEEEECTTTTSCS
T ss_pred CccccCccCCCCEEEEeCCCCCcCCCCCHHHHHHHH-HhCC--CC-EEEEECchhhhcc
Confidence 1101111 1112111123454 4566777755 4332 23 7999999986543
No 114
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=28.94 E-value=1.3e+02 Score=28.61 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=21.2
Q ss_pred CCC-ChHHHHHHHHhccC-CCCCeEEEEEeCCCCCCC
Q 024329 211 EGP-IIDDEINATIVRPL-PRGAKLHAIIDSCYSGTV 245 (269)
Q Consensus 211 ~g~-I~~deL~~~L~~~l-~~g~~l~vIlD~C~SG~~ 245 (269)
.|. ++.+++.+++ +.. .+...+++|+|.||+.-.
T Consensus 258 tG~~~~~~~l~~l~-~~a~~~~~~~~ii~De~y~~~~ 293 (546)
T 2zy4_A 258 PSVKMDQRSLERVR-NIVAEHRPDLMILTDDVYGTFA 293 (546)
T ss_dssp SCBCCCHHHHHHHH-HHHHHTCTTCEEEEECTTGGGS
T ss_pred CCccCCHHHHHHHH-HHHHhccCCcEEEEeCcchhhc
Confidence 454 4566776654 322 023467899999998644
No 115
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=28.63 E-value=1.8e+02 Score=25.74 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=13.8
Q ss_pred CeEEEEEeCCCCCCCCC
Q 024329 231 AKLHAIIDSCYSGTVLD 247 (269)
Q Consensus 231 ~~l~vIlD~C~SG~~~d 247 (269)
..+++|+|.+|++...+
T Consensus 226 ~~~~li~De~~~~~~~~ 242 (430)
T 2x5f_A 226 TKVIAVVDDAYYGLFYE 242 (430)
T ss_dssp CEEEEEEECTTTTCBCS
T ss_pred CCEEEEEehhcccccCC
Confidence 57899999999986543
No 116
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=28.39 E-value=2.3e+02 Score=24.12 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH-hCCCCCEEEEEE
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ-DCQPGDSLVFHY 181 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~-~~~~gD~lvfYF 181 (269)
.-...+++.|.+.+|.+.++|.+ +.. ..+.+..++..+.. ..++||.|++.-
T Consensus 44 ~~~~~l~~~la~~~g~~~~~v~~-~~g--------~t~a~~~~~~~~~~~~~~~gd~vl~~~ 96 (384)
T 1eg5_A 44 LHMEKAREKVAKVLGVSPSEIFF-TSC--------ATESINWILKTVAETFEKRKRTIITTP 96 (384)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEEE-ESC--------HHHHHHHHHHHHHHHTTTTCCEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCCeEEE-ECC--------HHHHHHHHHHhhhhhccCCCCEEEECC
Confidence 34566888888778988777754 432 34556666666642 135889887763
No 117
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=27.82 E-value=2.9e+02 Score=23.75 Aligned_cols=52 Identities=8% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCC--CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 123 VKSMWFLLVRMLGF--PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 123 A~~m~~~L~~~~Gf--~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
.+.++++|.+.+|+ +.++|.+ +.. +.+.+..+++.+ +++||.|++.=-+|..
T Consensus 75 ~~~la~~l~~~~g~~~~~~~v~~-~~G--------~~~al~~~~~~l---~~~gd~Vl~~~~~y~~ 128 (369)
T 3cq5_A 75 RDELAAYITKQTGVAVTRDNLWA-ANG--------SNEILQQLLQAF---GGPGRTALGFQPSYSM 128 (369)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEE-ESH--------HHHHHHHHHHHH---CSTTCEEEEEESSCTH
T ss_pred HHHHHHhhhhcccCCCChHhEEE-CCC--------hHHHHHHHHHHh---cCCCCEEEEcCCChHH
Confidence 34567777666665 4566644 432 445566666555 4688988877555543
No 118
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.69 E-value=32 Score=24.20 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=19.0
Q ss_pred cccCCCCCCceecCCCCceeecccccceeecc
Q 024329 5 VERCSGCGRQLWLPPQAVAARCYACRSVTSFP 36 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~ 36 (269)
..+|+.|++.+.|+ .++| .|..+--..
T Consensus 15 ~~rC~~C~kkvgl~----~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT----GFMC-RCGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCCTT----CEEC-SSSCEECTT
T ss_pred CCcChhhCCccCcc----CEEe-ecCCEeccc
Confidence 45799999887776 5788 587655443
No 119
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=27.52 E-value=3.6e+02 Score=24.73 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCCcc--eEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 024329 125 SMWFLLVRMLGFPSDC--VVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 125 ~m~~~L~~~~Gf~~~~--I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~ 187 (269)
..++.+.+.+|.+.++ ..++... -+ ..+..++..+ +++||.|++.=-.||..
T Consensus 94 ~~~~~~a~~~g~~~~~~~~~V~~~s-------Gs-~an~~~~~al---l~pGD~Vl~~~~~~~~~ 147 (483)
T 1rv3_A 94 LCQKRALQAYGLDPQCWGVNVQPYS-------GS-PANFAVYTAL---VEPHGRIMGLDLPDGGH 147 (483)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSS-------HH-HHHHHHHHHH---TCTTCEEEEECGGGTCC
T ss_pred HHHHHHHHHhCCCcccCceEEEECC-------cH-HHHHHHHHHh---cCCCCEEEEecCccCcC
Confidence 3457777778887533 2122221 13 3344445444 57999988775444443
No 120
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=27.20 E-value=1.3e+02 Score=25.89 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCCCc-ceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEE
Q 024329 122 DVKSMWFLLVRMLGFPSD-CVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFH 180 (269)
Q Consensus 122 DA~~m~~~L~~~~Gf~~~-~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfY 180 (269)
-.+.+++.|.+.+|.+.+ ++.+++.. ..+.+..++..+ +++||.|++.
T Consensus 50 ~~~~~~~~la~~~g~~~~~~~i~~t~g--------~t~a~~~~~~~l---~~~gd~vl~~ 98 (362)
T 2c0r_A 50 VHNEAQARLLALLGNPTGYKVLFIQGG--------ASTQFAMIPMNF---LKEGQTANYV 98 (362)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEESSH--------HHHHHHHHHHHH---CCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCC--------chHHHHHHHHhc---CCCCCeEEEE
Confidence 456778888777899764 66666653 345555555555 4689987654
No 121
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=26.69 E-value=1.8e+02 Score=25.27 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHHhhCC--CCcc-eEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 118 GSINDVKSMWFLLVRMLGF--PSDC-VVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~Gf--~~~~-I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
+...=-+.++++|.+.+|+ +.++ |.+ +.. ..+.+..++..+ +++||.|++.=-+|..
T Consensus 64 g~~~l~~~la~~~~~~~g~~~~~~~~v~~-~~g--------~~~a~~~~~~~~---~~~gd~vl~~~~~~~~ 123 (389)
T 1gd9_A 64 GLLELREAIAEKLKKQNGIEADPKTEIMV-LLG--------ANQAFLMGLSAF---LKDGEEVLIPTPAFVS 123 (389)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEE-ESS--------TTHHHHHHHTTT---CCTTCEEEEEESCCTT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCeEEE-cCC--------hHHHHHHHHHHh---CCCCCEEEEcCCCchh
Confidence 3334345677777766684 5667 655 432 234455455444 4688988887666654
No 122
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=26.50 E-value=43 Score=28.09 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=13.7
Q ss_pred HhCCCCCEEEEEEecc
Q 024329 169 QDCQPGDSLVFHYSGH 184 (269)
Q Consensus 169 ~~~~~gD~lvfYFSGH 184 (269)
+..+.||.+|||=|+-
T Consensus 50 R~Mk~GD~~fFYHSnc 65 (176)
T 3eop_A 50 RAMKLGEEAFFYHSNC 65 (176)
T ss_dssp HHCCTTCEEEEEECCS
T ss_pred HhcCCCCEEEEEecCC
Confidence 3578999999999983
No 123
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=26.38 E-value=2.3e+02 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
.....+++.|.+.+|.+.++|.+ +.. ..+.+..+++.+. .++||.|++.--+|..
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~-~~g--------~t~a~~~~~~~~~--~~~gd~vl~~~~~~~~ 113 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITI-TDN--------VTTGCDIVLWGLD--WHQGDEILLTDCEHPG 113 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEE-ESS--------HHHHHHHHHHHSC--CCTTCEEEEETTCCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHEEE-eCC--------hHHHHHHHHhCCC--CCCCCEEEEecCcccH
Confidence 45667888888778887777755 332 3344444444431 4688988876444543
No 124
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=26.14 E-value=1.4e+02 Score=26.19 Aligned_cols=48 Identities=19% Similarity=0.084 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 126 MWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 126 m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
.++.|.+.+|.+.++| +++. ..+.+..++..+ +++||.|++--..|+.
T Consensus 81 ~~~~la~~~~~~~~~v-~~~s---------Gs~a~~~a~~~~---~~~gd~v~~~~~~~~~ 128 (420)
T 3gbx_A 81 AIDRAKELFGADYANV-QPHS---------GSQANFAVYTAL---LQPGDTVLGMNLAQGG 128 (420)
T ss_dssp HHHHHHHHHTCSEEEC-CCSS---------HHHHHHHHHHHH---CCTTCEEEEEEEC---
T ss_pred HHHHHHHHhCCCCcee-EecC---------cHHHHHHHHHHh---cCCCCEEEecchhhcc
Confidence 3456666678865544 2222 234455555444 5799999886555554
No 125
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.86 E-value=21 Score=27.42 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=18.7
Q ss_pred cccCCCCCCceecCCCCcee-ecccccce
Q 024329 5 VERCSGCGRQLWLPPQAVAA-RCYACRSV 32 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~-~c~~c~~~ 32 (269)
..+|..|+....+ ..... .|+.|.+.
T Consensus 73 ~~~C~~CG~~~e~--~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKP--NALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECS--CCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeC--CCCCCCcCccccCC
Confidence 4579999987765 34456 89999754
No 126
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.70 E-value=44 Score=23.87 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=24.1
Q ss_pred ccccCCC--CCCceecCCCCceeecc-----cccce
Q 024329 4 RVERCSG--CGRQLWLPPQAVAARCY-----ACRSV 32 (269)
Q Consensus 4 ~~~~c~~--c~~~~~~~~~~~~~~c~-----~c~~~ 32 (269)
..++|+. |+..+...++.+.++|. .|+..
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~ 59 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFA 59 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCC
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCe
Confidence 4678988 99999888888899998 88744
No 127
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.68 E-value=38 Score=25.86 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=20.3
Q ss_pred ccccCCCCCCceecCCCCceeeccccccee
Q 024329 4 RVERCSGCGRQLWLPPQAVAARCYACRSVT 33 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~ 33 (269)
|...|+.|++.|.-- |. .+.|..|+.--
T Consensus 31 M~~~CP~Cq~eL~~~-g~-~~hC~~C~~~f 58 (101)
T 2jne_A 31 MELHCPQCQHVLDQD-NG-HARCRSCGEFI 58 (101)
T ss_dssp CCCBCSSSCSBEEEE-TT-EEEETTTCCEE
T ss_pred ccccCccCCCcceec-CC-EEECccccchh
Confidence 557899999988743 33 66799998643
No 128
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=25.39 E-value=1.3e+02 Score=25.99 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHHHHhh-CCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 124 KSMWFLLVRML-GFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 124 ~~m~~~L~~~~-Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
..+++.|.+.+ +...++|.+... ..+.+..++..+ +++||.|++.--+|..
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g---------~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~ 117 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNG---------ATGANLLVLYSL---IEPGDHVISLYPTYQQ 117 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEEESSCTH
T ss_pred HHHHHHHHHHhccCChhhEEEcCC---------hHHHHHHHHHHh---cCCCCEEEEeCCCchh
Confidence 35677776655 566777755432 345555555555 5789999887777754
No 129
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=24.67 E-value=3.2e+02 Score=25.22 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHHhhCC--CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 117 TGSINDVKSMWFLLVRMLGF--PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 117 ~g~~nDA~~m~~~L~~~~Gf--~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
.|...=-+.++++|.+++|+ ..++|.+ +.. ..+.|..++..+. .++||.|++---.|.
T Consensus 134 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G--------~~~al~~~~~~l~--~~~gd~Vlv~~p~y~ 193 (500)
T 3tcm_A 134 QGIHGLRDAIASGIASRDGFPANADDIFL-TDG--------ASPGVHLMMQLLI--RNEKDGILVPIPQYP 193 (500)
T ss_dssp TCCHHHHHHHHHHHHHHHSSCCCGGGEEE-ESS--------SHHHHHHHHHHHC--CSTTEEEEEEESCCT
T ss_pred cChHHHHHHHHHHHHhhcCCCCCcccEEE-cCC--------HHHHHHHHHHHHc--CCCCCEEEEeCCCcH
Confidence 44444445577777666674 5677754 442 3455666665552 158898888655553
No 130
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=24.53 E-value=1.9e+02 Score=25.16 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecc
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGH 184 (269)
.-...+++.|.+.+|.+.+++.+++.. ..+.+..++..+ +++||.|++.--+|
T Consensus 46 ~~~~~~~~~la~~~~~~~~~~v~~~~s--------gt~al~~~~~~~---~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 46 HYMNEVMALYRGVFRTENRWTMLVDGT--------SRAGIEAILVSA---IRPGDKVLVPVFGR 98 (411)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEEESC--------HHHHHHHHHHHH---CCTTCEEEEEECSH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCC--------cHHHHHHHHHHh---cCCCCEEEEecCCc
Confidence 345667888887789887765566653 345566666665 67899988876655
No 131
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=24.52 E-value=1.8e+02 Score=25.53 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=22.5
Q ss_pred CCCCC-hHHHHHHHHhccCC---C--CCeEEEEEeCCCCCCCCC
Q 024329 210 TEGPI-IDDEINATIVRPLP---R--GAKLHAIIDSCYSGTVLD 247 (269)
Q Consensus 210 ~~g~I-~~deL~~~L~~~l~---~--g~~l~vIlD~C~SG~~~d 247 (269)
+.|.+ ..+++.+++ +... + ...+++|+|..|++-..+
T Consensus 191 PtG~~~~~~~l~~l~-~~~~~~~~~~~~~~~li~De~y~~~~~~ 233 (413)
T 3t18_A 191 PTGYSLSDEEWDEVI-TFLKEKAEDKDKKITLIVDVAYLEFAGD 233 (413)
T ss_dssp TTCCCCCHHHHHHHH-HHHHHHTTSTTCEEEEEEECTTGGGSSS
T ss_pred CCCCCCCHHHHHHHH-HHHHHHhhccCCcEEEEEecccccccCC
Confidence 44544 566666643 3221 1 568899999999765544
No 132
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=24.45 E-value=1.8e+02 Score=25.21 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCCEEEEEEeccccccCC
Q 024329 161 RTAMRWLAQDCQPGDSLVFHYSGHGSRQKD 190 (269)
Q Consensus 161 ~~aL~~L~~~~~~gD~lvfYFSGHG~~~~d 190 (269)
..++.++.+...+++.+++.++|||....+
T Consensus 271 ~aa~~~~~~~~~~~~~vv~i~tg~g~ky~~ 300 (308)
T 2egu_A 271 IHAALKVAKELGKGKKVLAIIPSNGERYLS 300 (308)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECBBGGGGTT
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCccccc
Confidence 334434443336789999999999988654
No 133
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=24.41 E-value=53 Score=22.19 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=22.2
Q ss_pred ccCCCCCC-ceecCCCCceeeccccccee
Q 024329 6 ERCSGCGR-QLWLPPQAVAARCYACRSVT 33 (269)
Q Consensus 6 ~~c~~c~~-~~~~~~~~~~~~c~~c~~~~ 33 (269)
..|+.|+. .|..-.....+.|..|.-|-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 46999987 67776677789999998664
No 134
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=24.20 E-value=1.1e+02 Score=27.33 Aligned_cols=60 Identities=8% Similarity=0.136 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 024329 117 TGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYS 182 (269)
Q Consensus 117 ~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFS 182 (269)
..+.+=|+..-+.+.+.+||.+-.|......+ -+.+++.+.|..++..++++|.|++++-
T Consensus 24 ~~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~DvIi~q~P 83 (339)
T 3rhz_A 24 QSTAQLCQNTVTDVAVSLGYRELGIYCYQIHT------DSESELSKRLDGIVAGLRHGDVVIFQTP 83 (339)
T ss_dssp TCHHHHHHHHHHHHHHHTTCEEEEEECCCGGG------SCHHHHHHHHHHHTTTCCTTCEEEEEEC
T ss_pred cchHHHHHHHHHHHHHHCCCeEEEeecccccc------ccHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 34555555544444456799753332111111 1346777788888889999999988764
No 135
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=24.16 E-value=47 Score=29.09 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH-hCCCCC-EEEE
Q 024329 122 DVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ-DCQPGD-SLVF 179 (269)
Q Consensus 122 DA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~-~~~~gD-~lvf 179 (269)
-.+.+++.|.+.+|.++++|.+... ..+.|..++..+.. ..++|| .|++
T Consensus 64 ~~~~l~~~la~~~~~~~~~v~~~~g---------~t~al~~~~~~l~~~~~~~gd~~Vl~ 114 (400)
T 3vax_A 64 GVERAREYLASTVSAEPDELIFTSG---------ATESNNIALLGLAPYGERTGRRHIIT 114 (400)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEESC---------HHHHHHHHHHTTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcEEEeCC---------HHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 3567888888778988777755433 34455555554431 124789 8887
No 136
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.62 E-value=64 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=24.9
Q ss_pred CCcccccCCCCCCceecCCCC----ceeecccccceeeccC
Q 024329 1 MTSRVERCSGCGRQLWLPPQA----VAARCYACRSVTSFPS 37 (269)
Q Consensus 1 ~~~~~~~c~~c~~~~~~~~~~----~~~~c~~c~~~~~~~~ 37 (269)
|+. +.-|+.|+.-|.+..+. ..+.|..|.-+-.+..
T Consensus 1 m~~-m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 1 MSN-FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp --C-CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred CCc-ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 444 34699999988777543 3799999987666553
No 137
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=23.59 E-value=1.2e+02 Score=22.77 Aligned_cols=57 Identities=12% Similarity=-0.015 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCC-CCCEEEEEEeccccc
Q 024329 122 DVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQ-PGDSLVFHYSGHGSR 187 (269)
Q Consensus 122 DA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~-~gD~lvfYFSGHG~~ 187 (269)
-...++++|. .||...++-...-+ -|..++.+-..+|.+-.. ..|+|.||.-|-...
T Consensus 23 R~~kv~k~~~-~yg~rvQ~SVFe~~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~~~~~ 80 (100)
T 4es1_A 23 RLRKVAKACQ-NYGQRVQNSVFECI--------VDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYK 80 (100)
T ss_dssp HHHHHHHHHH-TTEEEEETTEEEEE--------ECHHHHHHHHHHHHHHSCTTTCEEEEEEECCCSS
T ss_pred HHHHHHHHHH-HhChhheeeEEEEE--------cCHHHHHHHHHHHHhhcCCCCCEEEEEEcCCCcc
Confidence 3556777775 46654332212111 245555544444444443 469999999885443
No 138
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=23.36 E-value=2.2e+02 Score=24.98 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHhhCC--CCc-ceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 024329 118 GSINDVKSMWFLLVRMLGF--PSD-CVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGS 186 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~Gf--~~~-~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~ 186 (269)
|...=.+.++++|.+.+|+ +.+ +|.+... ..+.+..++..+ .++||.|++.=-+|..
T Consensus 63 g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g---------~~~al~~~~~~~---~~~gd~Vl~~~~~y~~ 122 (411)
T 2o0r_A 63 GSAPLRRAIAAQRRRHFGVDYDPETEVLVTVG---------ATEAIAAAVLGL---VEPGSEVLLIEPFYDS 122 (411)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEH---------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCceEEEeCC---------HHHHHHHHHHHh---cCCCCEEEEeCCCcHh
Confidence 3344455677888766675 455 6655332 345555555555 4689988876555543
No 139
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.16 E-value=38 Score=24.49 Aligned_cols=27 Identities=22% Similarity=0.588 Sum_probs=18.0
Q ss_pred cccCCCCCCceecCCCCceeecccccceeecc
Q 024329 5 VERCSGCGRQLWLPPQAVAARCYACRSVTSFP 36 (269)
Q Consensus 5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~ 36 (269)
..+|+.|+..+.+. .++| .|..+--..
T Consensus 25 ~~RC~~C~kkvgL~----~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT----GFKC-RCGSTFCGT 51 (74)
T ss_dssp CCBCSSSCCBCTTT----CEEC-TTSCEECTT
T ss_pred CccchhhcCccccc----ceEe-ccCCEeccc
Confidence 35688888887775 4778 577554433
No 140
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=23.13 E-value=31 Score=28.59 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=18.7
Q ss_pred CCCCCCceecCCCC----ceeeccccc
Q 024329 8 CSGCGRQLWLPPQA----VAARCYACR 30 (269)
Q Consensus 8 c~~c~~~~~~~~~~----~~~~c~~c~ 30 (269)
|++||..|.+|||| ..|.|..++
T Consensus 22 ~r~~GvrliiPpga~~~ptrI~cRl~~ 48 (161)
T 3f59_A 22 SRHNGLRVVIPPRTCAAPTRITCRLVK 48 (161)
T ss_dssp TTCSSCEEEECTTSCSSCEEEEEEEEC
T ss_pred ccCCCEEEEECCCCCCCCcEEEEEEEC
Confidence 88999999999998 356666665
No 141
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.12 E-value=16 Score=25.55 Aligned_cols=25 Identities=32% Similarity=0.688 Sum_probs=18.3
Q ss_pred cCCCCCCceecCCCCceeecccccc
Q 024329 7 RCSGCGRQLWLPPQAVAARCYACRS 31 (269)
Q Consensus 7 ~c~~c~~~~~~~~~~~~~~c~~c~~ 31 (269)
-|++||-...+...-..-.|.+|+.
T Consensus 35 ~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp ECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred eecccCCEeeecCCeEEEEehhhhh
Confidence 3777887777777777777777753
No 142
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=23.07 E-value=3.8e+02 Score=23.48 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHHHHhhCC--CCc-ceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecc
Q 024329 117 TGSINDVKSMWFLLVRMLGF--PSD-CVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH 184 (269)
Q Consensus 117 ~g~~nDA~~m~~~L~~~~Gf--~~~-~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGH 184 (269)
.|...=.+.++++|.+.+|. +.+ +|.+ +.. ..+.+..+++.+ +++||.|++.--+|
T Consensus 77 ~g~~~l~~~la~~l~~~~g~~~~~~~~v~~-~~g--------~~~a~~~~~~~~---~~~gd~Vl~~~p~y 135 (429)
T 1yiz_A 77 FGHPRLVQALSKLYSQLVDRTINPMTEVLV-TVG--------AYEALYATIQGH---VDEGDEVIIIEPFF 135 (429)
T ss_dssp SCCHHHHHHHHHHHHHHHTSCCCTTTSEEE-ESH--------HHHHHHHHHHHH---CCTTCEEEEEESCC
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCcCCEEE-ecC--------hHHHHHHHHHHh---cCCCCEEEEcCCCc
Confidence 34444456678888766674 455 6654 332 345555555555 46889887765555
No 143
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=23.00 E-value=56 Score=25.32 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=25.7
Q ss_pred ccccCCCCCCceecCC----CCceeecccccceeecc
Q 024329 4 RVERCSGCGRQLWLPP----QAVAARCYACRSVTSFP 36 (269)
Q Consensus 4 ~~~~c~~c~~~~~~~~----~~~~~~c~~c~~~~~~~ 36 (269)
++.-|+.|+.-|.++. +...+.|..|.....+.
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 4567999999888774 45689999998766554
No 144
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=22.33 E-value=2.3e+02 Score=24.73 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=19.2
Q ss_pred CCCCC-hHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 024329 210 TEGPI-IDDEINATIVRPLPRGAKLHAIIDSCYSG 243 (269)
Q Consensus 210 ~~g~I-~~deL~~~L~~~l~~g~~l~vIlD~C~SG 243 (269)
+.|.+ +.+++.+++ +.. +...+++|+|..|+.
T Consensus 192 ptG~~~~~~~~~~l~-~~a-~~~~~~li~De~~~~ 224 (417)
T 3g7q_A 192 PTGNVITDEELMKLD-RLA-NQHNIPLVIDNAYGV 224 (417)
T ss_dssp TTCCCCCHHHHHHHH-HHH-HHTTCCEEEECTTCT
T ss_pred CCCCccCHHHHHHHH-HHH-HHcCCEEEEeCCCcc
Confidence 34544 455666543 222 224578999999975
No 145
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=21.99 E-value=1.4e+02 Score=22.36 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCC-CCEEEEEEecccc
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQP-GDSLVFHYSGHGS 186 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~-gD~lvfYFSGHG~ 186 (269)
.-...+++.|. .+|...++-...-+ -|..++.+-...|.+-..+ .|+|.||.-+-..
T Consensus 25 kr~~kv~k~l~-~yG~rvQ~SVFe~~--------lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~~~ 82 (103)
T 3oq2_A 25 RRLRRIAKACQ-DYGQRVQYSVFECV--------VDPAQWAKLKHRLLSEMDKEKDCLRFYYLGANW 82 (103)
T ss_dssp HHHHHHHHHHG-GGEEEEETTEEEEE--------ECHHHHHHHHHHHHHHSCTTTCEEEEEEEETTG
T ss_pred HHHHHHHHHHH-HhCccceEEEEEEE--------cCHHHHHHHHHHHHHhcCCCCCEEEEEEeCccc
Confidence 45667888885 46643322111111 3555565555555555644 7999999877443
No 146
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A
Probab=21.88 E-value=1.7e+02 Score=26.81 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHH-h-hCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC------------------CCCCEEEEE
Q 024329 121 NDVKSMWFLLVR-M-LGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC------------------QPGDSLVFH 180 (269)
Q Consensus 121 nDA~~m~~~L~~-~-~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~------------------~~gD~lvfY 180 (269)
.+..++...|.. + -.|+ ....++.+ +.+++.+.|+.+.+.. ...-.++|.
T Consensus 33 ~~l~dla~tl~~~rr~~~~-~R~avva~---------~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv 102 (401)
T 4amm_A 33 PELTDLAAGLAAAHRGDVP-ARFAAAVR---------DADGLVAALDRALGHLAEGGRRLLDAGRGLFLVVGGPLRVGLL 102 (401)
T ss_dssp HHHHHHHHHHHHHSCSSCS-EEEEEEES---------SHHHHHHHHHHHHHHHHTTCCEEEEGGGTEEEESSCCCCEEEE
T ss_pred CCHHHHHHHHhhccccCCC-ceEEEEEC---------CHHHHHHHHHHHHhhhccCCccccCCCCceeecCCCCCCEEEE
Confidence 456677777762 2 2333 33444333 5778888887665321 122358999
Q ss_pred EeccccccCCC
Q 024329 181 YSGHGSRQKDY 191 (269)
Q Consensus 181 FSGHG~~~~d~ 191 (269)
|+|.|.+....
T Consensus 103 F~GQGsq~~gM 113 (401)
T 4amm_A 103 FPGQAAPVHAD 113 (401)
T ss_dssp ECCCCCCBTTC
T ss_pred ECCcccchhhh
Confidence 99999998765
No 147
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.41 E-value=73 Score=26.13 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=26.2
Q ss_pred ccCCCCCCc---eec--CCCCceeecccccceeeccCC
Q 024329 6 ERCSGCGRQ---LWL--PPQAVAARCYACRSVTSFPSS 38 (269)
Q Consensus 6 ~~c~~c~~~---~~~--~~~~~~~~c~~c~~~~~~~~~ 38 (269)
|-|+.|+.+ |.. -.+.-..+|..|.+.+-|..+
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~~~ 141 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTH 141 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCcccch
Confidence 779999986 554 345678999999999999854
No 148
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=21.38 E-value=42 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.6
Q ss_pred HHHhCCCCCEEEEE
Q 024329 167 LAQDCQPGDSLVFH 180 (269)
Q Consensus 167 L~~~~~~gD~lvfY 180 (269)
+++..++||.+|||
T Consensus 34 ~lr~Mk~GD~~~fY 47 (147)
T 2p5d_A 34 TINKVKVGDKLIIY 47 (147)
T ss_dssp HHTTCCTTCEEEEE
T ss_pred HHHhCCCCCEEEEE
Confidence 34578999999999
No 149
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=20.83 E-value=2.5e+02 Score=20.52 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhCCCC-cceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEec
Q 024329 123 VKSMWFLLVRMLGFPS-DCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSG 183 (269)
Q Consensus 123 A~~m~~~L~~~~Gf~~-~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSG 183 (269)
+..+..+|+++...++ +.+.++.+...- |+-......| -+.-+.++-|++.||+
T Consensus 32 v~~~~~~lRkrL~l~~~~alFlyVnn~~~----P~~d~~~~~L---y~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 32 IQGLIDFIKKFLKLVASEQLFIYVNQSFA----PSPDQEVGTL---YECFGSDGKLVLHYCK 86 (91)
T ss_dssp HHHHHHHHHHHTTCCSSSCCEEEETTTBC----CCTTCBHHHH---HHHHCBTTEEEEEEES
T ss_pred HHHHHHHHHHHhCCCCCCeEEEEECCccC----CChhhHHHHH---HHHhCCCCEEEEEEeC
Confidence 4567888888888854 467777776422 3322222233 2222357899999987
No 150
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=20.69 E-value=3e+02 Score=23.85 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHhhCC--CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 024329 118 GSINDVKSMWFLLVRMLGF--PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185 (269)
Q Consensus 118 g~~nDA~~m~~~L~~~~Gf--~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG 185 (269)
|...=-+.++++|...+|. ++++|.+ +.. ..+.|..++..+ +++||.|++-=-+|.
T Consensus 69 g~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~g--------~~~al~~~~~~l---~~~gd~Vlv~~p~y~ 126 (385)
T 1b5p_A 69 GIPELREALAEKFRRENGLSVTPEETIV-TVG--------GSQALFNLFQAI---LDPGDEVIVLSPYWV 126 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCCGGGEEE-ESH--------HHHHHHHHHHHH---CCTTCEEEEEESCCT
T ss_pred CCHHHHHHHHHHHHHHhCCCCChHHEEE-cCC--------hHHHHHHHHHHh---cCCCCEEEEcCCCch
Confidence 4444445677777665664 4567654 332 344455555544 578998887655553
No 151
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=20.68 E-value=2.3e+02 Score=23.88 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEE
Q 024329 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFH 180 (269)
Q Consensus 121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfY 180 (269)
.....+++.|.+.+|.+.++|.+ +.. ..+.+..++..+ .++||.|++.
T Consensus 34 ~~~~~l~~~la~~~g~~~~~i~~-~~g--------~t~a~~~~~~~~---~~~gd~vl~~ 81 (352)
T 1iug_A 34 EVFLKARGLLREAFRTEGEVLIL-TGS--------GTLAMEALVKNL---FAPGERVLVP 81 (352)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEE-ESC--------HHHHHHHHHHHH---CCTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEE-cCc--------hHHHHHHHHHhc---cCCCCeEEEE
Confidence 34577888888888987666544 432 345566566555 4689988773
No 152
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=20.57 E-value=90 Score=25.42 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHh------CCCCCEEEEEEec
Q 024329 156 TKQNIRTAMRWLAQD------CQPGDSLVFHYSG 183 (269)
Q Consensus 156 Tk~nI~~aL~~L~~~------~~~gD~lvfYFSG 183 (269)
|+++|+++-.+|++. +++.|++-++|+-
T Consensus 45 t~e~I~~At~ELl~eii~~N~l~~eDIvSv~FTv 78 (148)
T 1xho_A 45 TADEIVAETQKLLKEMAEKNGLEEDDIISIIFTV 78 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEe
Confidence 788888887766643 6789999999975
No 153
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.45 E-value=47 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=18.8
Q ss_pred CcccccCCCCCCceecCCCCce
Q 024329 2 TSRVERCSGCGRQLWLPPQAVA 23 (269)
Q Consensus 2 ~~~~~~c~~c~~~~~~~~~~~~ 23 (269)
|...|.|..|++-|.=|.|-+.
T Consensus 31 a~t~V~C~~Cgt~L~~PTGGKa 52 (63)
T 3j20_W 31 PATKVRCLICGATLVEPTGGKG 52 (63)
T ss_dssp CSSCEECSSSCCEEEECCSSSC
T ss_pred CCeEEEccCcCCEEecCCCCcE
Confidence 4577899999999999998764
No 154
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Probab=20.31 E-value=81 Score=29.98 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=48.7
Q ss_pred eEEEEEeeCCCCCCCCCCChHHHHHH-HHHHHH--------HhhCC--C-CcceEEecCCCCCCCCCccHHHHHHH--HH
Q 024329 100 KKALLCGVTYNDTNYMLTGSINDVKS-MWFLLV--------RMLGF--P-SDCVVILTEEEKNPYRIPTKQNIRTA--MR 165 (269)
Q Consensus 100 k~ALlIGInY~~~~~~L~g~~nDA~~-m~~~L~--------~~~Gf--~-~~~I~lLtd~e~~~~~~pTk~nI~~a--L~ 165 (269)
.+.+|||+. |.+..=|+. +.+.+. .++|. + ..+|.++.-. ...|+...+..+ +.
T Consensus 50 gr~~vvg~G--------KAa~~MA~aa~e~~~~~~~~GlVvt~~g~~~~~~~~i~v~eA~----HPvPD~~s~~Aa~~il 117 (429)
T 2b8n_A 50 DRVILVAVG--------KAAWRMAKAAYEVLGKKIRKGVVVTKYGHSEGPIDDFEIYEAG----HPVPDENTIKTTRRVL 117 (429)
T ss_dssp CSEEEEEES--------TTHHHHHHHHHHHHGGGEEEEEEEEETTCCCSCCTTCEEEEEC----SSSCCHHHHHHHHHHH
T ss_pred CCEEEEEec--------HHHHHHHHHHHHHhhccCccEEEEECCCcCCCCCCceEEEECC----CCCCCHHHHHHHHHHH
Confidence 466777774 555565555 555451 12333 2 2345554421 245777766654 56
Q ss_pred HHHHhCCCCCEEEEEEecccccc
Q 024329 166 WLAQDCQPGDSLVFHYSGHGSRQ 188 (269)
Q Consensus 166 ~L~~~~~~gD~lvfYFSGHG~~~ 188 (269)
+++++++++|.|+|..||=|+-.
T Consensus 118 ~l~~~l~~~Dlvl~LISGGGSAL 140 (429)
T 2b8n_A 118 ELVDQLNENDTVLFLLSGGGSSL 140 (429)
T ss_dssp HHHSSCCTTCEEEEEECTTHHHH
T ss_pred HHHhcCCCCCEEEEEecCcHHHH
Confidence 88899999999999999988864
No 155
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.23 E-value=4.3e+02 Score=23.02 Aligned_cols=53 Identities=8% Similarity=-0.048 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 024329 122 DVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187 (269)
Q Consensus 122 DA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~ 187 (269)
....+++.|.+.+|. ++|.+ ++. ..+.+..++..+ ..++||.|++---+|...
T Consensus 33 ~~~~l~~~la~~~~~--~~v~~-~~g--------gt~al~~~~~~l--~~~~gd~Vl~~~~~~~~~ 85 (394)
T 1o69_A 33 FVNRFEQSVKDYSKS--ENALA-LNS--------ATAALHLALRVA--GVKQDDIVLASSFTFIAS 85 (394)
T ss_dssp HHHHHHHHHHHHHCC--SEEEE-ESC--------HHHHHHHHHHHT--TCCTTCEEEEESSSCGGG
T ss_pred HHHHHHHHHHHHhCC--CcEEE-eCC--------HHHHHHHHHHHc--CCCCCCEEEECCCccHHH
Confidence 466777888776776 45544 432 234455455444 257899888776666654
No 156
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=20.00 E-value=2.6e+02 Score=23.92 Aligned_cols=58 Identities=3% Similarity=-0.083 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHHhhCC--CCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCC--CCEEEEEEecccc
Q 024329 117 TGSINDVKSMWFLLVRMLGF--PSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQP--GDSLVFHYSGHGS 186 (269)
Q Consensus 117 ~g~~nDA~~m~~~L~~~~Gf--~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~--gD~lvfYFSGHG~ 186 (269)
.|...=-+.++++|.+.+|. +.++|.+ ++. ..+.+..+++.+ +++ ||.|++.--+|..
T Consensus 59 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~-t~g--------~~~al~~~~~~~---~~~~~gd~vl~~~p~~~~ 120 (376)
T 3ezs_A 59 AFEESLRAAQRGFFKRRFKIELKENELIS-TLG--------SREVLFNFPSFV---LFDYQNPTIAYPNPFYQI 120 (376)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCGGGEEE-ESS--------SHHHHHHHHHHH---TTTCSSCEEEEEESCCTH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHEEE-CcC--------cHHHHHHHHHHH---cCCCCCCEEEEecCCcHh
Confidence 34444456688888777787 6677755 442 345566666655 357 8998887666654
Done!