Query 024330
Match_columns 269
No_of_seqs 132 out of 1422
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02339 thermosome_arch ther 100.0 2.1E-58 4.6E-63 443.3 26.8 255 13-268 10-265 (519)
2 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.1E-57 2.5E-62 438.8 26.7 254 13-267 2-256 (527)
3 TIGR02340 chap_CCT_alpha T-com 100.0 2.6E-57 5.7E-62 437.0 27.3 256 13-268 6-261 (536)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 3.1E-57 6.6E-62 435.3 27.6 251 13-268 10-261 (531)
5 TIGR02344 chap_CCT_gamma T-com 100.0 2.3E-57 4.9E-62 436.7 25.6 255 13-268 10-265 (525)
6 TIGR02343 chap_CCT_epsi T-comp 100.0 3E-57 6.4E-62 435.9 26.2 259 6-268 9-274 (532)
7 TIGR02342 chap_CCT_delta T-com 100.0 1.2E-56 2.6E-61 430.7 26.8 253 13-268 3-256 (517)
8 KOG0361 Chaperonin complex com 100.0 2E-57 4.3E-62 402.8 19.5 258 3-268 1-268 (543)
9 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.3E-56 2.7E-61 431.5 26.5 251 14-268 18-270 (526)
10 cd03343 cpn60 cpn60 chaperonin 100.0 2E-56 4.4E-61 429.6 26.1 254 13-268 9-262 (517)
11 TIGR02345 chap_CCT_eta T-compl 100.0 3.7E-56 8.1E-61 427.7 25.4 255 6-268 2-265 (522)
12 PTZ00212 T-complex protein 1 s 100.0 9E-56 2E-60 425.9 27.9 259 1-268 1-271 (533)
13 KOG0358 Chaperonin complex com 100.0 4E-57 8.8E-62 400.2 16.3 255 11-268 18-272 (534)
14 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.2E-55 2.5E-60 424.1 26.3 251 14-267 3-254 (515)
15 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.1E-55 2.4E-60 424.7 26.3 248 13-268 10-264 (522)
16 cd03336 TCP1_beta TCP-1 (CTT o 100.0 3.4E-55 7.4E-60 420.7 27.0 247 13-268 7-259 (517)
17 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 4.3E-55 9.3E-60 416.8 25.5 240 13-257 6-246 (484)
18 TIGR02346 chap_CCT_theta T-com 100.0 2.7E-54 5.8E-59 415.3 27.1 248 14-268 12-262 (531)
19 TIGR02341 chap_CCT_beta T-comp 100.0 5.6E-54 1.2E-58 412.1 26.4 247 13-268 8-260 (519)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.6E-54 5.7E-59 411.1 22.7 233 13-246 10-243 (480)
21 COG0459 GroL Chaperonin GroEL 100.0 1E-52 2.3E-57 400.3 24.6 246 13-268 5-252 (524)
22 cd00309 chaperonin_type_I_II c 100.0 6.9E-52 1.5E-56 393.6 24.9 228 14-246 3-230 (464)
23 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.1E-49 4.6E-54 376.8 25.4 224 16-246 5-230 (472)
24 KOG0360 Chaperonin complex com 100.0 8.3E-50 1.8E-54 361.6 18.4 266 3-268 3-268 (545)
25 KOG0363 Chaperonin complex com 100.0 1E-49 2.3E-54 351.7 17.5 253 7-268 3-264 (527)
26 KOG0362 Chaperonin complex com 100.0 3.6E-48 7.9E-53 352.8 22.4 245 14-268 20-265 (537)
27 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.2E-47 2.7E-52 365.7 23.3 228 31-268 1-228 (485)
28 PTZ00114 Heat shock protein 60 100.0 2.8E-46 6.1E-51 360.9 26.3 212 13-245 16-239 (555)
29 PRK00013 groEL chaperonin GroE 100.0 2.9E-46 6.3E-51 359.4 26.1 223 13-268 4-237 (542)
30 PRK12849 groEL chaperonin GroE 100.0 2.9E-46 6.2E-51 359.5 25.0 221 14-268 5-237 (542)
31 KOG0364 Chaperonin complex com 100.0 8.8E-48 1.9E-52 345.7 12.0 260 5-268 2-265 (527)
32 cd03344 GroEL GroEL_like type 100.0 1.2E-45 2.7E-50 354.0 25.0 210 14-244 3-224 (520)
33 TIGR02348 GroEL chaperonin Gro 100.0 2.1E-45 4.6E-50 352.8 24.6 211 14-245 4-226 (524)
34 PRK12851 groEL chaperonin GroE 100.0 4.3E-45 9.3E-50 351.5 25.9 213 13-245 5-228 (541)
35 CHL00093 groEL chaperonin GroE 100.0 2.1E-45 4.6E-50 353.2 22.9 216 13-248 4-230 (529)
36 PRK12850 groEL chaperonin GroE 100.0 8.8E-45 1.9E-49 349.5 25.2 212 13-244 5-227 (544)
37 PLN03167 Chaperonin-60 beta su 100.0 1.5E-44 3.2E-49 350.3 24.6 219 14-267 59-291 (600)
38 PRK12852 groEL chaperonin GroE 100.0 4.5E-44 9.7E-49 345.1 25.1 212 13-245 5-228 (545)
39 PRK14104 chaperonin GroEL; Pro 100.0 3.5E-43 7.5E-48 338.4 24.1 210 13-243 5-226 (546)
40 KOG0359 Chaperonin complex com 100.0 5.6E-42 1.2E-46 307.9 6.0 242 18-267 16-257 (520)
41 KOG0356 Mitochondrial chaperon 100.0 1.5E-27 3.1E-32 221.0 14.7 213 12-245 17-241 (550)
42 KOG0357 Chaperonin complex com 99.9 6.6E-22 1.4E-26 173.9 7.2 133 2-144 6-143 (400)
43 cd03333 chaperonin_like chaper 99.6 1.5E-15 3.2E-20 129.9 8.1 93 149-246 2-94 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.5 3.6E-14 7.9E-19 125.4 8.5 95 166-268 18-113 (261)
45 KOG0230 Phosphatidylinositol-4 98.0 1.1E-05 2.3E-10 83.8 6.7 86 166-251 332-417 (1598)
46 PF08708 PriCT_1: Primase C te 62.9 42 0.00092 22.9 6.4 52 102-159 15-66 (71)
47 PF07141 Phage_term_sma: Putat 38.7 1.2E+02 0.0026 24.0 5.9 75 90-165 7-84 (174)
48 TIGR03859 PQQ_PqqD coenzyme PQ 34.2 1.1E+02 0.0023 21.7 4.8 46 41-86 13-58 (81)
49 PF12554 MOZART1: Mitotic-spin 32.7 74 0.0016 20.5 3.3 20 101-120 21-40 (48)
50 PF04719 TAFII28: hTAFII28-lik 31.5 86 0.0019 23.1 3.9 29 98-126 56-89 (90)
51 PF08861 DUF1828: Domain of un 30.6 1.1E+02 0.0025 22.0 4.5 62 50-111 17-84 (90)
52 KOG4189 Uncharacterized conser 26.6 79 0.0017 26.8 3.3 33 123-159 106-138 (209)
53 KOG3219 Transcription initiati 26.0 97 0.0021 26.2 3.7 32 96-127 142-178 (195)
54 PHA02591 hypothetical protein; 23.8 1.2E+02 0.0027 21.7 3.4 35 102-136 47-81 (83)
55 PF02796 HTH_7: Helix-turn-hel 23.8 1E+02 0.0022 19.1 2.7 32 104-135 11-42 (45)
56 PF01230 HIT: HIT domain; Int 23.2 1.3E+02 0.0027 21.8 3.6 33 18-50 45-77 (98)
57 PRK12282 tryptophanyl-tRNA syn 22.9 5.9E+02 0.013 23.3 11.8 128 19-156 150-306 (333)
58 PF02474 NodA: Nodulation prot 22.7 56 0.0012 27.2 1.7 17 29-45 21-37 (196)
59 PRK00756 acyltransferase NodA; 21.8 58 0.0013 27.0 1.6 17 29-45 21-37 (196)
60 PF00725 3HCDH: 3-hydroxyacyl- 20.7 2.4E+02 0.0052 20.1 4.7 29 99-127 7-36 (97)
61 PF02743 Cache_1: Cache domain 20.6 93 0.002 21.4 2.4 38 31-69 41-79 (81)
62 COG0396 sufC Cysteine desulfur 20.6 1.2E+02 0.0027 26.5 3.5 45 2-52 159-203 (251)
No 1
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.1e-58 Score=443.34 Aligned_cols=255 Identities=46% Similarity=0.665 Sum_probs=241.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDG 89 (519)
T TIGR02339 10 QRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDG 89 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhccccc-CCchhHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLI-GGDSDFF 171 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~-~~~~~~l 171 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++..+.+.|.++|+|+++||+. +.+.+.|
T Consensus 90 Ttt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~l 168 (519)
T TIGR02339 90 TTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEI-ATKISPEDRDLLKKVAETSLTGKASAEVTKDKL 168 (519)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcccHHHHHHHHHhhhccccccchhHHHH
Confidence 9999999999999999999999999999999999999999999998 8888765678899999999999999 6889999
Q ss_pred HHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCcccccc
Q 024330 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (269)
Q Consensus 172 ~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~ 251 (269)
++++++|+.++.+..++|...+|+++|+|++..|++++||++++|++|++++.++.||++++||||++++||||+++++.
T Consensus 169 s~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~ 248 (519)
T TIGR02339 169 ANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEI 248 (519)
T ss_pred HHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEecccccccccc
Confidence 99999999999643235666688999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECCHHHHHHHHh
Q 024330 252 GVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 252 ~~~v~i~~~~~~~~~~~ 268 (269)
++++.++++++++++++
T Consensus 249 ~~~~~i~~~~~~~~~l~ 265 (519)
T TIGR02339 249 DAKIRITDPDQIKKFLD 265 (519)
T ss_pred ceEEEECCHHHHHHHHH
Confidence 99999999999999865
No 2
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-57 Score=438.83 Aligned_cols=254 Identities=78% Similarity=1.137 Sum_probs=239.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhh-hhccccccCChhhhHHHHHHhhcccccCCchhHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE-KLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~-~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l 171 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++ + +++++..+++.|.++++|+++||+.+.+.+.|
T Consensus 82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~-~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l 160 (527)
T cd03335 82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHL-SISVDNLGKESLINVAKTSMSSKIIGADSDFF 160 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhh-ccCCCccCHHHHHHHHHHHhcccccchhHHHH
Confidence 999999999999999999999999999999999999999999986 5 88887557888999999999999998888999
Q ss_pred HHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCcccccc
Q 024330 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (269)
Q Consensus 172 ~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~ 251 (269)
++++++|+..+...+.+|...+++++|+|++..|++++||++++|++|++++.++.||++++||||++++|||++++++.
T Consensus 161 s~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 161 ANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCcccc
Confidence 99999999998532334544588899999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECCHHHHHHHH
Q 024330 252 GVQVLVTDPRELEKIR 267 (269)
Q Consensus 252 ~~~v~i~~~~~~~~~~ 267 (269)
++++.++++++|+++.
T Consensus 241 ~~~~~~~~~~~le~~~ 256 (527)
T cd03335 241 GVQVVVTDPEKLEKIR 256 (527)
T ss_pred ceeEEeCCHHHHHHHH
Confidence 9999999999999885
No 3
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-57 Score=436.96 Aligned_cols=256 Identities=75% Similarity=1.103 Sum_probs=241.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
++.+|.+++..|++||..|++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~ 172 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++.++++++..+.+.+.++|+|+++||+.+.+++.|+
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 165 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFS 165 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999998744788875567889999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCccccccC
Q 024330 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (269)
Q Consensus 173 ~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~~ 252 (269)
+++++|+..+...+.+|...+++++|++++..|++++||++++|++|++++.++.||++++||||++++|||++++++.+
T Consensus 166 ~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~ 245 (536)
T TIGR02340 166 NIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALG 245 (536)
T ss_pred HHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCc
Confidence 99999999985323445556888999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCHHHHHHHHh
Q 024330 253 VQVLVTDPRELEKIRQ 268 (269)
Q Consensus 253 ~~v~i~~~~~~~~~~~ 268 (269)
+++.++++++|+.+.+
T Consensus 246 ~~~~~~~~~~le~~~~ 261 (536)
T TIGR02340 246 VQIVVDDPAKLEGIRQ 261 (536)
T ss_pred eeEEeCCHHHHHHHHH
Confidence 9999999999999864
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-57 Score=435.27 Aligned_cols=251 Identities=31% Similarity=0.491 Sum_probs=237.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDG 89 (531)
T TIGR02347 10 ESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDG 89 (531)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccc-cCChhhhHHHHHHhhcccccCCchhHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVE-KLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~-~~~~~~l~~i~~t~l~sk~~~~~~~~l 171 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ ++++. ..+.+.|.++++|+++||+.+.++++|
T Consensus 90 TTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l 168 (531)
T TIGR02347 90 TTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKF-KIKTEDEVDRELLLNVARTSLRTKLPIDLADQL 168 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCHHHHHHHHHHHhccccchhhHHHH
Confidence 9999999999999999999999999999999999999999999987 77653 346788999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCcccccc
Q 024330 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (269)
Q Consensus 172 ~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~ 251 (269)
++++++|+..+.+ ++. .+++++|++++..|++.+||++++|++|++++.+++||++++||||++++|||++++++.
T Consensus 169 s~iv~~Av~~v~~---~~~-~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~ 244 (531)
T TIGR02347 169 TEIVVDAVLAIKK---DGE-QIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEV 244 (531)
T ss_pred HHHHHHHHHHHhh---cCC-CCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCcccc
Confidence 9999999999953 232 477889999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECCHHHHHHHHh
Q 024330 252 GVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 252 ~~~v~i~~~~~~~~~~~ 268 (269)
++++.+++++|++.|.+
T Consensus 245 ~~~~~~~~~~~~~~~~~ 261 (531)
T TIGR02347 245 NSGFFYSNAEQREKLVE 261 (531)
T ss_pred CceEEEcCHHHHHHHHH
Confidence 99999999999998864
No 5
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-57 Score=436.71 Aligned_cols=255 Identities=33% Similarity=0.525 Sum_probs=238.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDG 89 (525)
T TIGR02344 10 KRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (525)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~ 172 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++..+.+.|.++++|+++||+.+.|.+.|+
T Consensus 90 Ttt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls 168 (525)
T TIGR02344 90 TTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEI-SIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMC 168 (525)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCHHHHHHHHHHhhccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999987 888876667889999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCcccccCcc-eeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCcccccc
Q 024330 173 NLVVEAVQAVKMTNQRGEVKYPIKG-INILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (269)
Q Consensus 173 ~li~~Av~~v~~~~~~g~~~~~~~~-I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~ 251 (269)
+++++|+..+.+.+.++...+|+++ |+|++.+|++++||++++|++|++++.++.||++++||||++++|||++++++.
T Consensus 169 ~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~ 248 (525)
T TIGR02344 169 DLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGES 248 (525)
T ss_pred HHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEecccccccccc
Confidence 9999999999643212233556554 899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECCHHHHHHHHh
Q 024330 252 GVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 252 ~~~v~i~~~~~~~~~~~ 268 (269)
++++.++++++++++.+
T Consensus 249 ~~~i~i~~~~~~~~~l~ 265 (525)
T TIGR02344 249 QTNVEIMKEEDWNRILQ 265 (525)
T ss_pred cceEEeCCHHHHHHHHH
Confidence 99999999999998865
No 6
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3e-57 Score=435.90 Aligned_cols=259 Identities=35% Similarity=0.527 Sum_probs=240.0
Q ss_pred ccccchhh-----hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHH
Q 024330 6 QTLDILGE-----RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVE 80 (269)
Q Consensus 6 ~~~~~~~~-----~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~ 80 (269)
+|..++++ ..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~ 88 (532)
T TIGR02343 9 RPFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVE 88 (532)
T ss_pred CCchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHH
Confidence 45445554 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhcccccc--CChhhhHHHHHHh
Q 024330 81 LAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK--LGKDSLVNCAKTS 158 (269)
Q Consensus 81 ~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~--~~~~~l~~i~~t~ 158 (269)
++++|++++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++. .+.+.|.++++|+
T Consensus 89 ~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~ia~t~ 167 (532)
T TIGR02343 89 LSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEI-SEEISDDNNNKEPLIQAAKTS 167 (532)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999987 887742 3467899999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEE
Q 024330 159 MSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIA 238 (269)
Q Consensus 159 l~sk~~~~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~ 238 (269)
+++|+.+.+.+.|++++++|+..+... .++ .+|+++|+++++.|++++||++++|++|++++.+++||+.++||||+
T Consensus 168 l~sK~~~~~~~~ls~i~~~av~~i~~~-~~~--~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~ 244 (532)
T TIGR02343 168 LGSKIVSKCHRRFAEIAVDAVLMVADM-ERR--DVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIA 244 (532)
T ss_pred hccchhhHHHHHHHHHHHHHHHhhhhc-CCC--cCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEE
Confidence 999998888999999999999988531 122 57889999999999999999999999999999999999999999999
Q ss_pred EEeccCCccccccCcEEEECCHHHHHHHHh
Q 024330 239 CLDFNLQKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 239 i~~~~Le~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
+++|+||+++++.++++.+++++|+++|.+
T Consensus 245 l~~~~le~~~~~~~~~~~i~~~~~~~~~~~ 274 (532)
T TIGR02343 245 ILTCPFEPPKPKTKHKLDISSVEEYKKLQK 274 (532)
T ss_pred EEEeeccccccccceeEEeCCHHHHHHHHH
Confidence 999999999999999999999999987754
No 7
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-56 Score=430.71 Aligned_cols=253 Identities=38% Similarity=0.594 Sum_probs=237.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+...+.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 3 ~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 82 (517)
T TIGR02342 3 DKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDG 82 (517)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~ 172 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ ++|++..+.+.|.++++|++++|+.+.+.+.|+
T Consensus 83 Ttt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 161 (517)
T TIGR02342 83 TTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEM-SIPVDLSDREILIKSATTSLSSKVVSQYSSLLA 161 (517)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCccCHHHHHHHHHHHhccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999998 888875567889999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCC-CCCCccccCcEEEEEeccCCcccccc
Q 024330 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAA-QGMPLRVAPAKIACLDFNLQKTKMQL 251 (269)
Q Consensus 173 ~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~-~~~~~~~~~~kI~i~~~~Le~~k~~~ 251 (269)
+++++|+..+.....++ .+++++|+|++..|++.+||++++|++|++++.+ ++||++++||||++++|||++++++.
T Consensus 162 ~l~~~a~~~v~~~~~~~--~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~ 239 (517)
T TIGR02342 162 PLAVDAVLKVIDPENDK--NVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDM 239 (517)
T ss_pred HHHHHHHHHHhccccCC--ccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccc
Confidence 99999999996422233 4788999999999999999999999999999998 48999999999999999999999999
Q ss_pred CcEEEECCHHHHHHHHh
Q 024330 252 GVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 252 ~~~v~i~~~~~~~~~~~ 268 (269)
++++.++++++|+++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~ 256 (517)
T TIGR02342 240 ENQVIVNDYAQMDRVLK 256 (517)
T ss_pred cceEEeCCHHHHHHHHH
Confidence 99999999999998864
No 8
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-57 Score=402.81 Aligned_cols=258 Identities=39% Similarity=0.598 Sum_probs=242.5
Q ss_pred cccccccchhh---hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHH
Q 024330 3 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLV 79 (269)
Q Consensus 3 ~~~~~~~~~~~---~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~ 79 (269)
|+++|+.++++ ..+|.-+..+|++||..+++.++|||||+||+|+|++..|+++|||||+||||-|++.||++++++
T Consensus 1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV 80 (543)
T KOG0361|consen 1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV 80 (543)
T ss_pred CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence 67789988874 578888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCC----hhhhHHHH
Q 024330 80 ELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG----KDSLVNCA 155 (269)
Q Consensus 80 ~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~----~~~l~~i~ 155 (269)
+++++||.++||||||+++|++++|+++..+++.|+||..|+++|+.|...+++.++++ +..++..+ ++.|.++|
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~el-av~i~~~~~~~~r~lL~KcA 159 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKEL-AVEIDGSSKTELRELLEKCA 159 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHh-eeEecccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 88776322 56789999
Q ss_pred HHhhcccccCCchhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCC---CCccc
Q 024330 156 KTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG---MPLRV 232 (269)
Q Consensus 156 ~t~l~sk~~~~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~---~~~~~ 232 (269)
.|+++||+++.+.++|+++++||+..+.. ..++++|-|.|++||+++||.+++|+.|++.|++.+ +||++
T Consensus 160 ~T~lsSKlI~~ek~fF~~MvVDAV~~ld~-------~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~ 232 (543)
T KOG0361|consen 160 ATALSSKLIRQEKEFFAKMVVDAVLTLDN-------DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKF 232 (543)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHhhcc-------ccchhhcceeecCCCccchhhhccceeeeehccccchhhCcccc
Confidence 99999999999999999999999998841 367889999999999999999999999999999864 69999
Q ss_pred cCcEEEEEeccCCccccccCcEEEECCHHHHHHHHh
Q 024330 233 APAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 233 ~~~kI~i~~~~Le~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
.||||+++|.+||.+.++.++++++.+++||+++.+
T Consensus 233 ~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVD 268 (543)
T KOG0361|consen 233 LNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVD 268 (543)
T ss_pred CCceEEEEeeeeeecccccCceeecCCHHHHHHHHh
Confidence 999999999999999999999999999999999875
No 9
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-56 Score=431.54 Aligned_cols=251 Identities=36% Similarity=0.523 Sum_probs=235.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCCc
Q 024330 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGT 93 (269)
Q Consensus 14 ~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 93 (269)
..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||
T Consensus 18 ~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGT 97 (526)
T cd03339 18 RLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGT 97 (526)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCCh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhcccccc--CChhhhHHHHHHhhcccccCCchhHH
Q 024330 94 TSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK--LGKDSLVNCAKTSMSSKLIGGDSDFF 171 (269)
Q Consensus 94 tt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~--~~~~~l~~i~~t~l~sk~~~~~~~~l 171 (269)
||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++. .+.+.|.++++|++++|+.+.+.+.|
T Consensus 98 tt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~ 176 (526)
T cd03339 98 TGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEI-ADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQF 176 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCcccHHHHHHHHHHhhcccchhhHHHHH
Confidence 999999999999999999999999999999999999999999987 888752 25678999999999999998889999
Q ss_pred HHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCcccccc
Q 024330 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (269)
Q Consensus 172 ~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~ 251 (269)
++++++|+..+... . + ..+++++|+|++++|++++||++++|++|++++.+++||++++||||++++|+||+++++.
T Consensus 177 s~i~v~av~~i~~~-~-~-~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~ 253 (526)
T cd03339 177 AEIAVDAVLSVADL-E-R-KDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKT 253 (526)
T ss_pred HHHHHHHHHHHhhc-C-C-CccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCcccc
Confidence 99999999988531 1 1 1467789999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECCHHHHHHHHh
Q 024330 252 GVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 252 ~~~v~i~~~~~~~~~~~ 268 (269)
++++.++++++|++|.+
T Consensus 254 ~~~~~i~s~~~~~~~~~ 270 (526)
T cd03339 254 KHKLDITSVEDYKKLQE 270 (526)
T ss_pred ceEEEeCCHHHHHHHHH
Confidence 99999999999888754
No 10
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2e-56 Score=429.65 Aligned_cols=254 Identities=46% Similarity=0.680 Sum_probs=239.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+..+|.+++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 9 ~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 88 (517)
T cd03343 9 QRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDG 88 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~ 172 (269)
|||+++|+++|++++.+++++|+||+.|++||++|.+.++++|+++ +.+++..+.+.+.++|+|+++||+.+.+.+.|+
T Consensus 89 Ttt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~ 167 (517)
T cd03343 89 TTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEI-AIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLA 167 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-hcccCCCCHHHHHHHHHHhhcccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999998 888864467889999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCccccccC
Q 024330 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (269)
Q Consensus 173 ~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~~ 252 (269)
+++++|+.++...+ .+...+++++|+|+++.|++++||++++|++|++++.+++||++++||||++++|+||+++++.+
T Consensus 168 ~l~~~A~~~v~~~~-~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~ 246 (517)
T cd03343 168 DLVVDAVLQVAEKR-DGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEID 246 (517)
T ss_pred HHHHHHHHHhhhcc-CCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccc
Confidence 99999999985421 12235788999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCHHHHHHHHh
Q 024330 253 VQVLVTDPRELEKIRQ 268 (269)
Q Consensus 253 ~~v~i~~~~~~~~~~~ 268 (269)
+++.++++++++.+.+
T Consensus 247 ~~~~i~s~~~~~~~~~ 262 (517)
T cd03343 247 AKIRITSPDQLQAFLE 262 (517)
T ss_pred eeEEeCCHHHHHHHHH
Confidence 9999999999998764
No 11
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.7e-56 Score=427.75 Aligned_cols=255 Identities=39% Similarity=0.622 Sum_probs=236.6
Q ss_pred ccccchh---hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHH
Q 024330 6 QTLDILG---ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELA 82 (269)
Q Consensus 6 ~~~~~~~---~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~ 82 (269)
||..++. +..+|.+++..|++||..+++++++||||+||+|||+++.| ++|||||+||+++|+++||+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a 80 (522)
T TIGR02345 2 PTIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIA 80 (522)
T ss_pred CccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHH
Confidence 4444443 46789999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhccccccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccC---ChhhhHHHHHHhh
Q 024330 83 ELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL---GKDSLVNCAKTSM 159 (269)
Q Consensus 83 ~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~---~~~~l~~i~~t~l 159 (269)
++|++++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++.. +.+.+.++|+|++
T Consensus 81 ~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~l~~va~tsl 159 (522)
T TIGR02345 81 KSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEI-AVTIDEVKGEQREVLEKCAATAL 159 (522)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcCCcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987 8888632 3468999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCC---CccccCcE
Q 024330 160 SSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM---PLRVAPAK 236 (269)
Q Consensus 160 ~sk~~~~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~---~~~~~~~k 236 (269)
+||+.+.++++|++++++|+.++.+ + .+|+++|+++++.|++++||++++|++|++++.+++| |++++|||
T Consensus 160 ~sK~~~~~~~~l~~l~~~A~~~v~~---~---~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~k 233 (522)
T TIGR02345 160 NSKLIAHEKEFFSKMIVDAVLQLDI---D---DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPK 233 (522)
T ss_pred ccccccchHHHHHHHHHHHHHHHhh---c---cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccce
Confidence 9999999999999999999999842 1 4788899999999999999999999999999998864 89999999
Q ss_pred EEEEeccCCccccccCcEEEECCHHHHHHHHh
Q 024330 237 IACLDFNLQKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 237 I~i~~~~Le~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
|++++|||++++++.+..+.++++++|+++.+
T Consensus 234 Ill~~~~Le~~~~~~~~~i~~~~~~~~~~~~~ 265 (522)
T TIGR02345 234 ILLLNVELELKAEKDNAEIRVEDVEDYQAIVD 265 (522)
T ss_pred EEEEecCcccCccccceEEEECCHHHHHHHHH
Confidence 99999999999999999999999999988865
No 12
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=9e-56 Score=425.87 Aligned_cols=259 Identities=40% Similarity=0.610 Sum_probs=239.6
Q ss_pred CCcccccccchhh---hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecC-----CCCeEEecCHHHHhhhccccC
Q 024330 1 MAISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD-----IGDVTITNDGATILKMLEVEH 72 (269)
Q Consensus 1 ~~~~~~~~~~~~~---~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~-----~g~~~iTnDg~tIl~~l~~~h 72 (269)
|-|...|..++.+ ..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~h 80 (533)
T PTZ00212 1 MIMANVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDN 80 (533)
T ss_pred CcccccchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcC
Confidence 5566666667653 57889999999999999999999999999999999998 699999999999999999999
Q ss_pred chhHHHHHHHhhccccccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCC---hh
Q 024330 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG---KD 149 (269)
Q Consensus 73 P~~~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~---~~ 149 (269)
|+++|+++++++|++++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++..+ .+
T Consensus 81 P~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~ 159 (533)
T PTZ00212 81 PAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEI-AFDHGSDEEKFKE 159 (533)
T ss_pred HHHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-CcCCCccchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 88876433 57
Q ss_pred hhHHHHHHhhcccccCCchhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCC
Q 024330 150 SLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMP 229 (269)
Q Consensus 150 ~l~~i~~t~l~sk~~~~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~ 229 (269)
.|.++|+|+++||+.+.+.+.|++++++|+..+.. .+++++|++++++|++++||++++|+++++++.+ .||
T Consensus 160 ~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~-------~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~ 231 (533)
T PTZ00212 160 DLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG-------SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQP 231 (533)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc-------cCCccceEEEEecCcCccccEEEEeEEEecccCC-CCC
Confidence 89999999999999999999999999999998842 3678899999999999999999999999998865 589
Q ss_pred ccccCcEEEEEeccCCcccccc-CcEEEECCHHHHHHHHh
Q 024330 230 LRVAPAKIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 230 ~~~~~~kI~i~~~~Le~~k~~~-~~~v~i~~~~~~~~~~~ 268 (269)
++++||||++++||||+++++. ++++.+++++|+..|.+
T Consensus 232 ~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~ 271 (533)
T PTZ00212 232 KRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEA 271 (533)
T ss_pred ccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHH
Confidence 9999999999999999999998 99999999999988754
No 13
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-57 Score=400.24 Aligned_cols=255 Identities=38% Similarity=0.586 Sum_probs=241.2
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhcccccc
Q 024330 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (269)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (269)
..+....+++|.+|+.|++.+++.++|||||+||+|||+++.|+++|||||+|||++|.+-||+++|+++++..||.++|
T Consensus 18 f~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaG 97 (534)
T KOG0358|consen 18 FKDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAG 97 (534)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhcccccc
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhH
Q 024330 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDF 170 (269)
Q Consensus 91 DGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~ 170 (269)
|||||+|+|+++||+.+.+|+++|+||+.|...|+.|.++++++|.++ +.|++-.|++.|.+-+.|+|+||+.++++..
T Consensus 98 DGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m-~~~velsdre~Li~~atTsLnSKvvSq~s~l 176 (534)
T KOG0358|consen 98 DGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEM-SVPVELSDRESLIKSATTSLNSKVVSQYSSL 176 (534)
T ss_pred CCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhc-CCCcccCcHHHHHHHHHhHhhHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999998 9999887889999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCccccc
Q 024330 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (269)
Q Consensus 171 l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~ 250 (269)
++.+.++|+.++.. +....+.|+.+|+++|..||.++|+++++|++|+.......-|++++++||.+++|.|++||++
T Consensus 177 lapmAVdAV~kv~d--p~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtd 254 (534)
T KOG0358|consen 177 LAPMAVDAVLKVID--PENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTD 254 (534)
T ss_pred cchHHHHHHHhccC--cccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCC
Confidence 99999999999863 3333468899999999999999999999999999877766689999999999999999999999
Q ss_pred cCcEEEECCHHHHHHHHh
Q 024330 251 LGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 251 ~~~~v~i~~~~~~~~~~~ 268 (269)
+..++.++++.+|+++.+
T Consensus 255 men~iiv~DyaqMdrilk 272 (534)
T KOG0358|consen 255 MENQIIVNDYAQMDRILK 272 (534)
T ss_pred cccceEecCHHHHHHHHH
Confidence 999999999999999875
No 14
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-55 Score=424.09 Aligned_cols=251 Identities=37% Similarity=0.578 Sum_probs=235.5
Q ss_pred hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCCc
Q 024330 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGT 93 (269)
Q Consensus 14 ~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 93 (269)
...|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 3 KEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHHH
Q 024330 94 TSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFAN 173 (269)
Q Consensus 94 tt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~~ 173 (269)
||+++|+++|++++.+++++|+||+.|++||+.|.+.++++|+++ +.+++..+.+.|.++|+|+++||+.+.+++++++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~ 161 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSM-SIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAP 161 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999987 8888655678899999999999999999999999
Q ss_pred HHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCC-CCccccCcEEEEEeccCCccccccC
Q 024330 174 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG-MPLRVAPAKIACLDFNLQKTKMQLG 252 (269)
Q Consensus 174 li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~-~~~~~~~~kI~i~~~~Le~~k~~~~ 252 (269)
++++|+.++.+.+.. ..+|+++|++++..|++++||++++|++|++++.+++ ||+.++|||+++++||||+++++.+
T Consensus 162 li~~A~~~v~~~~~~--~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~ 239 (515)
T cd03338 162 IAVDAVLKVIDPATA--TNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMD 239 (515)
T ss_pred HHHHHHHHhhccccc--CcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccC
Confidence 999999999643211 2578899999999999999999999999999999986 5999999999999999999999999
Q ss_pred cEEEECCHHHHHHHH
Q 024330 253 VQVLVTDPRELEKIR 267 (269)
Q Consensus 253 ~~v~i~~~~~~~~~~ 267 (269)
+++.++++++++++.
T Consensus 240 ~~~~i~~~~~~~~~~ 254 (515)
T cd03338 240 NNIVVNDYAQMDRIL 254 (515)
T ss_pred ceEEeCCHHHHHHHH
Confidence 999999999998885
No 15
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-55 Score=424.69 Aligned_cols=248 Identities=42% Similarity=0.656 Sum_probs=232.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDG 89 (522)
T cd03340 10 DTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDG 89 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccC----ChhhhHHHHHHhhcccccCCch
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL----GKDSLVNCAKTSMSSKLIGGDS 168 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~----~~~~l~~i~~t~l~sk~~~~~~ 168 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++.. +.+.|.++++|+++||+.+.+.
T Consensus 90 Ttt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (522)
T cd03340 90 TTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEI-AVNIDKEDKEEQRELLEKCAATALNSKLIASEK 168 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hcccCcccccccHHHHHHHHHHHhccCcchhHH
Confidence 9999999999999999999999999999999999999999999987 8887643 2567999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCC---CCccccCcEEEEEeccCC
Q 024330 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG---MPLRVAPAKIACLDFNLQ 245 (269)
Q Consensus 169 ~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~---~~~~~~~~kI~i~~~~Le 245 (269)
++|++++++|+..+.+ .+++++|+++++.|++++||++++|++|++++.+++ ||++++||||++++||||
T Consensus 169 ~~l~~l~~~A~~~v~~-------~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le 241 (522)
T cd03340 169 EFFAKMVVDAVLSLDD-------DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELE 241 (522)
T ss_pred HHHHHHHHHHHHHhcc-------cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCC
Confidence 9999999999999842 356789999999999999999999999999999876 589999999999999999
Q ss_pred ccccccCcEEEECCHHHHHHHHh
Q 024330 246 KTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 246 ~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
+++++.++++.++++++++++.+
T Consensus 242 ~~~~~~~~~i~i~~~~~~~~~~~ 264 (522)
T cd03340 242 LKAEKDNAEVRVEDPEEYQAIVD 264 (522)
T ss_pred CCccccceEEEECCHHHHHHHHH
Confidence 99999999999999999888643
No 16
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.4e-55 Score=420.65 Aligned_cols=247 Identities=40% Similarity=0.622 Sum_probs=230.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecC--CCCeEEecCHHHHhhhccccCchhHHHHHHHhhcccccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD--IGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~--~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (269)
+..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|++++|
T Consensus 7 ~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~G 86 (517)
T cd03336 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVG 86 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhC
Confidence 467888999999999999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccC---ChhhhHHHHHHhhcccccCCc
Q 024330 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL---GKDSLVNCAKTSMSSKLIGGD 167 (269)
Q Consensus 91 DGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~---~~~~l~~i~~t~l~sk~~~~~ 167 (269)
|||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++.. +++.|.++|+|+++||+.+.+
T Consensus 87 DGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~ 165 (517)
T cd03336 87 DGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSS-AVDHSSDEEAFREDLLNIARTTLSSKILTQD 165 (517)
T ss_pred CChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcccccchhHHHHHHHHHhhccccccchh
Confidence 999999999999999999999999999999999999999999999988 8887421 357899999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCcc
Q 024330 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKT 247 (269)
Q Consensus 168 ~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~ 247 (269)
+++|++++++|+..+.. .+++++|+++++.|++++||++++|+++++++.+ .||++++||||++++||||++
T Consensus 166 ~~~l~~l~~~A~~~v~~-------~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~ 237 (517)
T cd03336 166 KEHFAELAVDAVLRLKG-------SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTD 237 (517)
T ss_pred HHHHHHHHHHHHHHhhc-------cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCcc
Confidence 99999999999999841 3677899999999999999999999999998765 479999999999999999999
Q ss_pred cccc-CcEEEECCHHHHHHHHh
Q 024330 248 KMQL-GVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 248 k~~~-~~~v~i~~~~~~~~~~~ 268 (269)
+++. ++++.+++++|++.|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~ 259 (517)
T cd03336 238 KIKIFGAKVRVDSTAKVAEIEE 259 (517)
T ss_pred cccccCceEEeCCHHHHHHHHH
Confidence 9997 89999999999988753
No 17
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.3e-55 Score=416.79 Aligned_cols=240 Identities=31% Similarity=0.476 Sum_probs=226.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDG 85 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDG 85 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhcccccc-CChhhhHHHHHHhhcccccCCchhHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK-LGKDSLVNCAKTSMSSKLIGGDSDFF 171 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~-~~~~~l~~i~~t~l~sk~~~~~~~~l 171 (269)
|||+++|+++||+++.+++++|+||+.|++||++|.+.++++|+++ +.+++. .+.+.+.++|+|++++|+.+.+++.|
T Consensus 86 TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l 164 (484)
T cd03342 86 TTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESF-KVPVEIDTDRELLLSVARTSLRTKLHADLADQL 164 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCHHHHHHHHHHHhCcccchhHHHHH
Confidence 9999999999999999999999999999999999999999999988 888852 36788999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCcccccc
Q 024330 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (269)
Q Consensus 172 ~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~ 251 (269)
++++++|+..+.+ ++. .+++++|+++++.|++.+||++++|++|++++.+++||++++||||++++|||++++++.
T Consensus 165 ~~l~~~A~~~v~~---~~~-~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~ 240 (484)
T cd03342 165 TEIVVDAVLAIYK---PDE-PIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEV 240 (484)
T ss_pred HHHHHHHHHHHhh---cCC-ccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCcccc
Confidence 9999999999953 232 578899999999999999999999999999999999999999999999999999999988
Q ss_pred CcEEEE
Q 024330 252 GVQVLV 257 (269)
Q Consensus 252 ~~~v~i 257 (269)
++++.+
T Consensus 241 ~~~~~~ 246 (484)
T cd03342 241 NSGFFY 246 (484)
T ss_pred CcEEEE
Confidence 877653
No 18
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-54 Score=415.32 Aligned_cols=248 Identities=37% Similarity=0.593 Sum_probs=228.5
Q ss_pred hcccH-HHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 14 RQAGQ-DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 14 ~~~g~-~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
..+|. +++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 12 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDG 91 (531)
T TIGR02346 12 HMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDG 91 (531)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCC
Confidence 45664 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhcc-cccc-CChhhhHHHHHHhhcccccCCchhH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAV-KVEK-LGKDSLVNCAKTSMSSKLIGGDSDF 170 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~-~v~~-~~~~~l~~i~~t~l~sk~~~~~~~~ 170 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +. ++++ .+.+.+.++++|+++||+.+. +++
T Consensus 92 TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~tsl~sK~~~~-~~~ 169 (531)
T TIGR02346 92 TNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEEL-VVWEVEDVRNKKELIKALKASISSKQYGN-EDF 169 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCCCHHHHHHHHHHHhccccCch-HHH
Confidence 9999999999999999999999999999999999999999999887 75 6643 346789999999999999987 899
Q ss_pred HHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCccccc
Q 024330 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (269)
Q Consensus 171 l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~ 250 (269)
|++++++|+.++.+. +...+++++|+|+++.|++++||++++|++|++++. +||++++||||++++||+++++++
T Consensus 170 ls~l~~~Ai~~v~~~---~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~ 244 (531)
T TIGR02346 170 LAQLVAKACSTVMPK---NPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTE 244 (531)
T ss_pred HHHHHHHHHHHHhhc---CCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCccc
Confidence 999999999998532 211478899999999999999999999999999854 579999999999999999999999
Q ss_pred cCcEEEECCHHHHHHHHh
Q 024330 251 LGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 251 ~~~~v~i~~~~~~~~~~~ 268 (269)
.++++.++++++|+++.+
T Consensus 245 ~~~~~~~~~~~~l~~~~~ 262 (531)
T TIGR02346 245 TKGTVLIHNAEELLNYSK 262 (531)
T ss_pred CceEEEECCHHHHHHHHH
Confidence 999999999999988754
No 19
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.6e-54 Score=412.06 Aligned_cols=247 Identities=39% Similarity=0.609 Sum_probs=229.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCC--CCeEEecCHHHHhhhccccCchhHHHHHHHhhcccccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDI--GDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~--g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (269)
+..+|++++..|+.||..++++++|||||+||+|||+++. |+++|||||+|||++|+++||.++|+++++++|++++|
T Consensus 8 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~G 87 (519)
T TIGR02341 8 QEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVG 87 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhC
Confidence 4678889999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccC---ChhhhHHHHHHhhcccccCCc
Q 024330 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL---GKDSLVNCAKTSMSSKLIGGD 167 (269)
Q Consensus 91 DGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~---~~~~l~~i~~t~l~sk~~~~~ 167 (269)
|||||+++|+++||++|.+++++|+||+.|++||+.|.+.++++|+++ +++++.. +++.|.++++|++++|+.+.+
T Consensus 88 DGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~ 166 (519)
T TIGR02341 88 DGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKS-SIDNGSDKTKFRDDLLNIARTTLSSKILSQH 166 (519)
T ss_pred CchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-cccccCcccccHHHHHHHHHHHhhhhhhhhH
Confidence 999999999999999999999999999999999999999999999987 8887532 357899999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCcc
Q 024330 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKT 247 (269)
Q Consensus 168 ~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~ 247 (269)
.+.|++++++|+..+.. ..+.++|+++++.|++++||++++|+++++.+.+ .||++++||||++++||||++
T Consensus 167 ~~~~s~l~~~av~~i~~-------~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~ 238 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKG-------SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTD 238 (519)
T ss_pred HHHHHHHHHHHHHHhcc-------CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCC
Confidence 99999999999998842 1356789999999999999999999999999765 589999999999999999999
Q ss_pred cccc-CcEEEECCHHHHHHHHh
Q 024330 248 KMQL-GVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 248 k~~~-~~~v~i~~~~~~~~~~~ 268 (269)
+++. ++++.+++++++.+|.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~ 260 (519)
T TIGR02341 239 KVKVFGSRVRVDSTAKVAELEA 260 (519)
T ss_pred ccccCCceEEeCCHHHHHHHHH
Confidence 9997 99999999999988754
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-54 Score=411.15 Aligned_cols=233 Identities=35% Similarity=0.565 Sum_probs=217.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
+..+|++++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||.++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 89 (480)
T cd03337 10 KRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (480)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~ 172 (269)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++..+.+.|.++++|+++||+.+.|.+.|+
T Consensus 90 Ttt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls 168 (480)
T cd03337 90 TTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEI-SIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMC 168 (480)
T ss_pred cchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccccCCHHHHHHHHHHHhccCcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999987 888876678899999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCcccccCc-ceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCc
Q 024330 173 NLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQK 246 (269)
Q Consensus 173 ~li~~Av~~v~~~~~~g~~~~~~~-~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~ 246 (269)
+++++|+..+.+........+|++ +|+|++++|++++||++++|++|++++.++.||++++||||++++||||+
T Consensus 169 ~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~ 243 (480)
T cd03337 169 NLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY 243 (480)
T ss_pred HHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce
Confidence 999999999964321111135554 49999999999999999999999999999999999999999999999987
No 21
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-52 Score=400.34 Aligned_cols=246 Identities=42% Similarity=0.596 Sum_probs=229.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
++.+|.+++..|+.|++.++++|++||||+||+|||+++.|+++|||||+||+++|+++||.++|+++++++||+++|||
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDG 84 (524)
T COG0459 5 ERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDG 84 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCc
Confidence 56789999999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~ 172 (269)
|||++||+++||+++.+++++|+||+.|++||++|.+.++++|++. +++++..+.+. +++.|+++||..+++ ++++
T Consensus 85 TTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~-a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i~ 160 (524)
T COG0459 85 TTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEI-AKPVSDSEEEL--KIAITSVASKSANSD-EEIG 160 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccCCcchhhh--hhhhheeeeeeccCh-HHHH
Confidence 9999999999999999999999999999999999999999999998 99987543333 899999999998876 9999
Q ss_pred HHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEcc-ccCCCCCC-ccccCcEEEEEeccCCccccc
Q 024330 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNA-FRAAQGMP-LRVAPAKIACLDFNLQKTKMQ 250 (269)
Q Consensus 173 ~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~-~~~~~~~~-~~~~~~kI~i~~~~Le~~k~~ 250 (269)
+++++|+.++.... .|+++|.+++..|++.+|+++++|++||+ ..+|++|| +.++||||+++||+|++.+++
T Consensus 161 ~lv~~Av~~v~~~~------~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~ 234 (524)
T COG0459 161 ELVVEAVEKVGKEQ------SDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPE 234 (524)
T ss_pred HHHHHHHHHhcccc------cccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEcccccccccc
Confidence 99999999995321 26789999999999999999999999999 55666789 899999999999999999999
Q ss_pred cCcEEEECCHHHHHHHHh
Q 024330 251 LGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 251 ~~~~v~i~~~~~~~~~~~ 268 (269)
.+.++.++++++++.|.+
T Consensus 235 l~~e~~i~~~~~l~~i~e 252 (524)
T COG0459 235 LPLEIVISSGKPLLIIAE 252 (524)
T ss_pred CcceeEecCccHHHHHHH
Confidence 999999999999999875
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.9e-52 Score=393.58 Aligned_cols=228 Identities=48% Similarity=0.688 Sum_probs=216.7
Q ss_pred hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCCc
Q 024330 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGT 93 (269)
Q Consensus 14 ~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 93 (269)
..+|++++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHHH
Q 024330 94 TSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFAN 173 (269)
Q Consensus 94 tt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~~ 173 (269)
||+++|+++|++++.+++++|+||+.|++||+.|.+.++++|+++ +++++..+.+.+.++++|+++||+.+.|++++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEI-AVPIDVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cCccCCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 999999999999999999999999999999999999999999998 8886555788999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCc
Q 024330 174 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQK 246 (269)
Q Consensus 174 li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~ 246 (269)
++++|+.++.+.. + .++.++|+|++..|++++||++++|++|++++.+++||++++||||++++|||++
T Consensus 162 l~~~Ai~~v~~~~--~--~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~ 230 (464)
T cd00309 162 LVVDAVLKVGKEN--G--DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY 230 (464)
T ss_pred HHHHHHHHhcccc--C--ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce
Confidence 9999999985422 1 4778899999999999999999999999999999999999999999999999998
No 23
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-49 Score=376.78 Aligned_cols=224 Identities=36% Similarity=0.597 Sum_probs=205.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCCchh
Q 024330 16 AGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTS 95 (269)
Q Consensus 16 ~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt 95 (269)
.+++++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccc-ccc-CChhhhHHHHHHhhcccccCCchhHHHH
Q 024330 96 VVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVK-VEK-LGKDSLVNCAKTSMSSKLIGGDSDFFAN 173 (269)
Q Consensus 96 ~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~-v~~-~~~~~l~~i~~t~l~sk~~~~~~~~l~~ 173 (269)
+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +.+ +++ .+.+.+.++++|+++||..+ ++++|++
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~ 162 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEEL-VVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSP 162 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCHHHHHHHHHHHhcccccc-hHHHHHH
Confidence 9999999999999999999999999999999999999999987 655 432 35678999999999999987 6899999
Q ss_pred HHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCc
Q 024330 174 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQK 246 (269)
Q Consensus 174 li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~ 246 (269)
++++|+.++.+.. .| .+++++|+|+++.|++++||++++|++|++.+. .++++++||||++++|||++
T Consensus 163 l~~~a~~~~~~~~-~~--~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~ 230 (472)
T cd03341 163 LVAEACISVLPEN-IG--NFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI 230 (472)
T ss_pred HHHHHHHHHhhcc-CC--cCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC
Confidence 9999999985421 13 478889999999999999999999999987654 46688999999999999998
No 24
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-50 Score=361.55 Aligned_cols=266 Identities=70% Similarity=0.977 Sum_probs=255.4
Q ss_pred cccccccchhhhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHH
Q 024330 3 ISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELA 82 (269)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~ 82 (269)
....|....+++.+|+.+|..|..|+..+++++++||||-|++||++++.|++++||||+|||+.+.++||+++++++.+
T Consensus 3 ~~~~~~~~~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvela 82 (545)
T KOG0360|consen 3 EAKKPLLCKGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELA 82 (545)
T ss_pred cccCCccccCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHH
Confidence 44578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhccc
Q 024330 83 ELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSK 162 (269)
Q Consensus 83 ~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk 162 (269)
..||+++|||||++++++++||+++.+|...++||+.++.||+.|+..+++++.+-++.+++.+....|.++++|+++||
T Consensus 83 q~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK 162 (545)
T KOG0360|consen 83 QLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSK 162 (545)
T ss_pred HhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcce
Confidence 99999999999999999999999999999999999999999999999999999876688998888999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEec
Q 024330 163 LIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDF 242 (269)
Q Consensus 163 ~~~~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~ 242 (269)
+++...++|+++++||+..+...+.+|...++++.++|.|.+|++..||.++.|+.++....+..||+++.|+||+++++
T Consensus 163 ~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~ 242 (545)
T KOG0360|consen 163 IIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDF 242 (545)
T ss_pred ecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEec
Confidence 99999999999999999998766667877899999999999999999999999999999998889999999999999999
Q ss_pred cCCccccccCcEEEECCHHHHHHHHh
Q 024330 243 NLQKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 243 ~Le~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
.|...+.++.-.+.+++|++++++++
T Consensus 243 ~Lqk~km~lGv~vvv~dp~kle~ir~ 268 (545)
T KOG0360|consen 243 TLQKTKMKLGVQVVVDDPEKLEQIRQ 268 (545)
T ss_pred ccccccccccceEEEcChHHHHHHHH
Confidence 99999999999999999999999986
No 25
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-49 Score=351.73 Aligned_cols=253 Identities=38% Similarity=0.622 Sum_probs=228.6
Q ss_pred cccchh---hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecC--CCCeEEecCHHHHhhhccccCchhHHHHHH
Q 024330 7 TLDILG---ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD--IGDVTITNDGATILKMLEVEHPAAKVLVEL 81 (269)
Q Consensus 7 ~~~~~~---~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~--~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~ 81 (269)
|..+++ ....|++++.+.+.++..++|+|+|||||+||+||++.. .|.+.+||||+|||+++.+.+|+|+++++.
T Consensus 3 p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~ 82 (527)
T KOG0363|consen 3 PVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDI 82 (527)
T ss_pred hhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheecc
Confidence 445554 457899999999999999999999999999999999875 478999999999999999999999999999
Q ss_pred HhhccccccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhcccccc---CChhhhHHHHHHh
Q 024330 82 AELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK---LGKDSLVNCAKTS 158 (269)
Q Consensus 82 ~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~---~~~~~l~~i~~t~ 158 (269)
++.||+++|||||++++|+++||++|.+|+.+.+||+.|+.||+.|.+.+.+.|.+. +..-.. .-++.|+++++|.
T Consensus 83 S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~-s~dns~~~~kfr~DLl~iarTT 161 (527)
T KOG0363|consen 83 SKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKS-SIDNSSDKEKFREDLLKIARTT 161 (527)
T ss_pred ccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHh-hhhccCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999765 443111 1157899999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEE
Q 024330 159 MSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIA 238 (269)
Q Consensus 159 l~sk~~~~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~ 238 (269)
|+||+.+.+.++|++++++|+.+++. .-+++.|+|+|+.||+++||+|-+|+++++.+.. ++|++++|+||+
T Consensus 162 L~SKiLsq~kehFaelavdAV~rLkG-------s~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iL 233 (527)
T KOG0363|consen 162 LSSKILSQDKEHFAELAVDAVLRLKG-------STNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKIL 233 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcC-------CCCccceeeehhcCCccccccccccceeccccCC-CCcccccccceE
Confidence 99999999999999999999999853 2467899999999999999999999999988764 789999999999
Q ss_pred EEeccCCccccc-cCcEEEECCHHHHHHHHh
Q 024330 239 CLDFNLQKTKMQ-LGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 239 i~~~~Le~~k~~-~~~~v~i~~~~~~~~~~~ 268 (269)
|-|.+++.+|-+ +.+.|++++..++.++..
T Consensus 234 IANT~mDtDKvKvfGarvrVds~~klaelE~ 264 (527)
T KOG0363|consen 234 IANTPMDTDKVKVFGARVRVDSTAKLAELEK 264 (527)
T ss_pred EecCCCcccceeeecceEeecchhHHHHHHH
Confidence 999999999998 489999999998887754
No 26
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-48 Score=352.77 Aligned_cols=245 Identities=31% Similarity=0.498 Sum_probs=223.2
Q ss_pred hcccHH-HHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCC
Q 024330 14 RQAGQD-VRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (269)
Q Consensus 14 ~~~g~~-~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (269)
..+|.+ +..+|+.||+.++++++|+|||+||+||++|..|++.+|||.+||+++++++||+++|++++++.|+++.|||
T Consensus 20 ~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGDg 99 (537)
T KOG0362|consen 20 SPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGDG 99 (537)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCCC
Confidence 356654 7789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHH
Q 024330 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (269)
Q Consensus 93 ttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~ 172 (269)
|+++|+|+++||++|.++|..|++|..|++||+.|.+++++.|+++......+ .+.....++|++.||.+.+ .++++
T Consensus 100 tnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d--~~d~~~~~rs~i~skq~~~-ed~l~ 176 (537)
T KOG0362|consen 100 TNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGD--LEDKEWALRSVIMSKQYGN-EDFLT 176 (537)
T ss_pred ceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhccc--ccChHHHHHHHHHHhhcch-HHHHH
Confidence 99999999999999999999999999999999999999999999984433332 2222388999999998875 68999
Q ss_pred HHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCccccccC
Q 024330 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (269)
Q Consensus 173 ~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~~ 252 (269)
+++++|+..+.+. + .|+.++|+++|+.|+++++|.++.||+|++.. .+.+++.+++||++++||+++..++++
T Consensus 177 ~lVa~ac~si~p~---~--~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~--eG~v~~ak~arvAvf~cP~d~~~TEtk 249 (537)
T KOG0362|consen 177 KLVAKACVSILPL---M--SFNVDNIRVCKILGGGLEDSCVVCGMVFKRDP--EGEVKSAKDARVAVFACPFDIAQTETK 249 (537)
T ss_pred HHHHHHHHhhccc---c--cccccceEEEEEecCCcccceeeEEEEecccc--CCcccccccceeEEEecCCCcccccCc
Confidence 9999999999654 2 38899999999999999999999999999774 456788899999999999999999999
Q ss_pred cEEEECCHHHHHHHHh
Q 024330 253 VQVLVTDPRELEKIRQ 268 (269)
Q Consensus 253 ~~v~i~~~~~~~~~~~ 268 (269)
+||.++|++|+..|++
T Consensus 250 gTvLi~~A~el~~FSK 265 (537)
T KOG0362|consen 250 GTVLLKNAKELLNFSK 265 (537)
T ss_pred ceeeecCcHhhhhhcc
Confidence 9999999999999976
No 27
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.2e-47 Score=365.68 Aligned_cols=228 Identities=41% Similarity=0.665 Sum_probs=213.3
Q ss_pred HHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCCchhHHHHHHHHHHHHHHH
Q 024330 31 VANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDL 110 (269)
Q Consensus 31 l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~l 110 (269)
|++++++||||+|++|||+++.|++++||||+||+++++++||+++++++++++|++++||||||+++|+++||+++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHHHHHHHHHHHhhccccCCc
Q 024330 111 VRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGE 190 (269)
Q Consensus 111 i~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~~li~~Av~~v~~~~~~g~ 190 (269)
+++|+||..|++||+.|.+.+++.|+++ +++++.. .+.+.++++|++++|+.+.|.++|++++++|+..+. .
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~-s~~~~~~-~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~-~----- 152 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKI-SIPINND-DESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIK-S----- 152 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHH-SEESTST-SHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHT-T-----
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhh-hcccccc-chhhhhhhcccccccccccchhhhhhhHHHHHHhhc-c-----
Confidence 9999999999999999999999999987 8888742 289999999999999999999999999999994442 1
Q ss_pred ccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCccccccCcEEEECCHHHHHHHHh
Q 024330 191 VKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 191 ~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
.+++++++++++.|++.+||++++|++|++++.+++||+++++|||++++|+|+++++ .++++.++++++++.+.+
T Consensus 153 -~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 153 -NFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSK 228 (485)
T ss_dssp -THHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHH
T ss_pred -cccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHh
Confidence 1677889999999999999999999999999999999999999999999999999999 999999999999998764
No 28
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.8e-46 Score=360.87 Aligned_cols=212 Identities=23% Similarity=0.381 Sum_probs=196.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCc----hhHHHHHHHhhcccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (269)
+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++++++|| .++|+++++++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 5678899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCch
Q 024330 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (269)
Q Consensus 89 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~ 168 (269)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++ +++++ +.+.+.++|+|+.+ .+
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~-s~~v~--~~~~l~~va~ts~~------~~ 166 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQ-SRPVK--TKEDILNVATISAN------GD 166 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHHcC------Ch
Confidence 99999999999999999999999999999999999999999999999998 88886 57789999998864 46
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCccee-EEEEeEEEccccCCCCC-------CccccCcEEEEE
Q 024330 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQGM-------PLRVAPAKIACL 240 (269)
Q Consensus 169 ~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS-~lv~Giv~~~~~~~~~~-------~~~~~~~kI~i~ 240 (269)
+.+++++++|+..+. ++| .|.+..|++..|| ++++|++|++++.+++| |+.++||+|+++
T Consensus 167 ~~l~~li~eAv~~vg---~~g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~ 234 (555)
T PTZ00114 167 VEIGSLIADAMDKVG---KDG---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVT 234 (555)
T ss_pred HHHHHHHHHHHHHhC---cCC---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEE
Confidence 899999999999884 223 2667789999998 89999999999999975 788999999999
Q ss_pred eccCC
Q 024330 241 DFNLQ 245 (269)
Q Consensus 241 ~~~Le 245 (269)
|++|+
T Consensus 235 d~~L~ 239 (555)
T PTZ00114 235 DKKIS 239 (555)
T ss_pred cCCCC
Confidence 99998
No 29
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.9e-46 Score=359.44 Aligned_cols=223 Identities=23% Similarity=0.365 Sum_probs=202.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCc----hhHHHHHHHhhcccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (269)
...+|.+++..|++||+.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++|+++++++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4567899999999999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCch
Q 024330 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (269)
Q Consensus 89 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~ 168 (269)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++ ++|++ +.+.+.+++.|+++ ++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-a~~~~--~~~~l~~va~ts~~------~~ 154 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKI-SKPVE--DKEEIAQVATISAN------GD 154 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHhccc------ch
Confidence 99999999999999999999999999999999999999999999999998 88886 57789999998753 68
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCC-------CccccCcEEEEEe
Q 024330 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (269)
Q Consensus 169 ~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~-------~~~~~~~kI~i~~ 241 (269)
+.+++++++|+..+. ++| .|+|.+..| ...||++++|++|++++.+++| |+.++||+|+++|
T Consensus 155 ~~ls~lv~~Av~~v~---~~g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d 223 (542)
T PRK00013 155 EEIGKLIAEAMEKVG---KEG-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITD 223 (542)
T ss_pred HHHHHHHHHHHHHhC---cCC-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEc
Confidence 999999999999884 223 267888777 6789999999999999999976 7889999999999
Q ss_pred ccCCccccccCcEEEECCHHHHHHHHh
Q 024330 242 FNLQKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 242 ~~Le~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
|++ ++++++..+.+
T Consensus 224 ~~i-------------~~~~~l~~~l~ 237 (542)
T PRK00013 224 KKI-------------SNIQDLLPVLE 237 (542)
T ss_pred Ccc-------------CCHHHHHHHHH
Confidence 954 56677666543
No 30
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.9e-46 Score=359.45 Aligned_cols=221 Identities=22% Similarity=0.312 Sum_probs=197.9
Q ss_pred hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCc----hhHHHHHHHhhccccc
Q 024330 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDREV 89 (269)
Q Consensus 14 ~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 89 (269)
..+|.+++..|+.||+.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++|++++|++|++++
T Consensus 5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 84 (542)
T PRK12849 5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA 84 (542)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence 457899999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchh
Q 024330 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (269)
Q Consensus 90 GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~ 169 (269)
||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++ +.+.+.++++|+. ++++
T Consensus 85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~-s~~~~--~~~~l~~va~ts~------~~~~ 155 (542)
T PRK12849 85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKAL-ARPVS--GSEEIAQVATISA------NGDE 155 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhc------CChH
Confidence 9999999999999999999999999999999999999999999999998 88886 5778999999885 3689
Q ss_pred HHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcce-eEEEEeEEEccccCCCCC-------CccccCcEEEEEe
Q 024330 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARD-SYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (269)
Q Consensus 170 ~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~d-S~lv~Giv~~~~~~~~~~-------~~~~~~~kI~i~~ 241 (269)
++++++++|+..+. .+|. + .+. .|++.+| |++++|++|++++.+++| |++++||+|+++|
T Consensus 156 ~l~~lv~~Av~~v~---~~g~--i-----~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 223 (542)
T PRK12849 156 EIGELIAEAMEKVG---KDGV--I-----TVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223 (542)
T ss_pred HHHHHHHHHHHHhc---cCCc--E-----eEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeec
Confidence 99999999999884 2332 3 232 6777775 899999999999999865 7889999999999
Q ss_pred ccCCccccccCcEEEECCHHHHHHHHh
Q 024330 242 FNLQKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 242 ~~Le~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
|.+ +++++++++.+
T Consensus 224 ~~i-------------~~~~~~~~~l~ 237 (542)
T PRK12849 224 KKI-------------SSLQDLLPLLE 237 (542)
T ss_pred CCc-------------CCHHHHHHHHH
Confidence 955 45666666543
No 31
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-48 Score=345.69 Aligned_cols=260 Identities=32% Similarity=0.514 Sum_probs=245.7
Q ss_pred cccccchh---hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHH
Q 024330 5 SQTLDILG---ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVEL 81 (269)
Q Consensus 5 ~~~~~~~~---~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~ 81 (269)
++|..++. .+.+|..++..|+.|++.++|.+++|+||+.|.||+.++.|.+..||||..||+++++.||.|+-++++
T Consensus 2 ~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel 81 (527)
T KOG0364|consen 2 QAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIEL 81 (527)
T ss_pred CCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhh
Confidence 57888876 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcc
Q 024330 82 AELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSS 161 (269)
Q Consensus 82 ~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~s 161 (269)
+++||+++||||||+++|++++|.++..++++|+||+.++++|.+|++.++..+++. +.+++..+...+++++++++.+
T Consensus 82 ~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~-~~~~d~~~~~km~~vi~~~v~t 160 (527)
T KOG0364|consen 82 SRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKI-SIPVDVKDQAKMLRVINSSVGT 160 (527)
T ss_pred hhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhh-cccCCcccHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999987 8999887888999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhhccccCCcccccC-cceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEE
Q 024330 162 KLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPI-KGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACL 240 (269)
Q Consensus 162 k~~~~~~~~l~~li~~Av~~v~~~~~~g~~~~~~-~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~ 240 (269)
|+.+.|++.++++..+|+.++... +|. .+|+ .+.+++|++||.+.||++++|+.++++..||.|.+.++||||+++
T Consensus 161 k~~~~~~~~~~~lal~avk~V~~~--~g~-e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLl 237 (527)
T KOG0364|consen 161 KFNSRWSDLICNLALDAVKTVGVE--NGR-EIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLL 237 (527)
T ss_pred hhhhhhcchhhhHHHHHHHHhhhc--cCc-eechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEe
Confidence 999999999999999999999643 444 4665 679999999999999999999999999999999999999999999
Q ss_pred eccCCccccccCcEEEECCHHHHHHHHh
Q 024330 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 241 ~~~Le~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
+|||||.|.+.+.++.+.-.++|.+++|
T Consensus 238 D~~LeykkGeSqtnve~~~eed~~r~Lq 265 (527)
T KOG0364|consen 238 DCPLEYKKGESQTNVEIVKEEDFTRILQ 265 (527)
T ss_pred cCCccCCCCccccceeeeechhHHHHHH
Confidence 9999999999999999999999998876
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.2e-45 Score=353.97 Aligned_cols=210 Identities=23% Similarity=0.382 Sum_probs=192.7
Q ss_pred hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCc----hhHHHHHHHhhccccc
Q 024330 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDREV 89 (269)
Q Consensus 14 ~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 89 (269)
..+|.+++..|++||+.++++++|||||+||+|||+++.|+++|||||+||+++++++|| .++|+++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 357889999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchh
Q 024330 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (269)
Q Consensus 90 GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~ 169 (269)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++ +++++ +.+.+.++|+|+++ .++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~-~~~i~--~~~~l~~va~ts~~------~~~ 153 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKL-SKPVK--TKEEIAQVATISAN------GDE 153 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcC------ChH
Confidence 9999999999999999999999999999999999999999999999998 89986 67889999999975 379
Q ss_pred HHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcce-eEEEEeEEEccccCCCCC---C----ccccCcEEEEEe
Q 024330 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARD-SYFLNGYALNAFRAAQGM---P----LRVAPAKIACLD 241 (269)
Q Consensus 170 ~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~d-S~lv~Giv~~~~~~~~~~---~----~~~~~~kI~i~~ 241 (269)
++++++++|+..+. .+|. |.+ ..|++.+| +++++|++|++++.+++| | ++++||+|+++|
T Consensus 154 ~l~~lv~~A~~~v~---~~~~-------i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 221 (520)
T cd03344 154 EIGELIAEAMEKVG---KDGV-------ITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTD 221 (520)
T ss_pred HHHHHHHHHHHHhc---cCCc-------EEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEEC
Confidence 99999999999884 2231 233 57888888 799999999999999886 4 578999999999
Q ss_pred ccC
Q 024330 242 FNL 244 (269)
Q Consensus 242 ~~L 244 (269)
|+|
T Consensus 222 ~~l 224 (520)
T cd03344 222 KKI 224 (520)
T ss_pred CCC
Confidence 996
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.1e-45 Score=352.81 Aligned_cols=211 Identities=24% Similarity=0.353 Sum_probs=191.1
Q ss_pred hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCc----hhHHHHHHHhhccccc
Q 024330 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDREV 89 (269)
Q Consensus 14 ~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 89 (269)
..+|.+++..|++|++.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++|+++++++|++++
T Consensus 4 ~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 83 (524)
T TIGR02348 4 IKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVA 83 (524)
T ss_pred ccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCcee
Confidence 457889999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchh
Q 024330 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (269)
Q Consensus 90 GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~ 169 (269)
||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++ +.+.+.++++|+.+ +++
T Consensus 84 GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~-s~~~~--~~~~l~~va~ts~~------~~~ 154 (524)
T TIGR02348 84 GDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKL-SKPVK--GKKEIAQVATISAN------NDE 154 (524)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcc------ChH
Confidence 9999999999999999999999999999999999999999999999998 89886 57789999998753 579
Q ss_pred HHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCc-ceeEEEEeEEEccccCCCCC-------CccccCcEEEEEe
Q 024330 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (269)
Q Consensus 170 ~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~-~dS~lv~Giv~~~~~~~~~~-------~~~~~~~kI~i~~ 241 (269)
.+++++++|+..+. ++|. |.|.+ |+.. .+|++++|++|++++.+++| |++++||+|+++|
T Consensus 155 ~l~~lv~~A~~~v~---~~~~-------i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 222 (524)
T TIGR02348 155 EIGSLIAEAMEKVG---KDGV-------ITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITD 222 (524)
T ss_pred HHHHHHHHHHHHhC---cCCc-------Eeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeecc
Confidence 99999999999884 3332 23433 4545 67999999999999999986 7889999999999
Q ss_pred ccCC
Q 024330 242 FNLQ 245 (269)
Q Consensus 242 ~~Le 245 (269)
|+++
T Consensus 223 ~~i~ 226 (524)
T TIGR02348 223 KKIS 226 (524)
T ss_pred CCcC
Confidence 9643
No 34
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.3e-45 Score=351.49 Aligned_cols=213 Identities=23% Similarity=0.322 Sum_probs=193.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCc----hhHHHHHHHhhcccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (269)
...+|.+++..|+++|+.+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 4467789999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCch
Q 024330 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (269)
Q Consensus 89 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~ 168 (269)
+||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++ +.+.+.++++++. +++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~-s~~~~--~~~~l~~va~~s~------~~~ 155 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKAN-ARPVT--TNAEIAQVATISA------NGD 155 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhc------cCh
Confidence 99999999999999999999999999999999999999999999999998 88886 5677899998775 368
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCC-------CCccccCcEEEEEe
Q 024330 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG-------MPLRVAPAKIACLD 241 (269)
Q Consensus 169 ~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~-------~~~~~~~~kI~i~~ 241 (269)
+.+++++++|+..+. .+|. +++.+.. ++..++++++|++|++++.+++ ||++++||+|+++|
T Consensus 156 ~~l~~lv~~Av~~vg---~~g~-------i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d 224 (541)
T PRK12851 156 AEIGRLVAEAMEKVG---NEGV-------ITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHE 224 (541)
T ss_pred HHHHHHHHHHHHHhc---ccCc-------eEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEc
Confidence 999999999999884 2232 3555555 4567899999999999999996 89999999999999
Q ss_pred ccCC
Q 024330 242 FNLQ 245 (269)
Q Consensus 242 ~~Le 245 (269)
++++
T Consensus 225 ~~i~ 228 (541)
T PRK12851 225 KKIS 228 (541)
T ss_pred CCcC
Confidence 9864
No 35
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.1e-45 Score=353.18 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=192.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhH----HHHHHHhhcccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAK----VLVELAELQDRE 88 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~----ll~~~~~~~~~~ 88 (269)
...+|.+++...+++|..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++ |+++++++|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 3457789999999999999999999999999999999999999999999999999999999995 788899999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCch
Q 024330 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (269)
Q Consensus 89 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~ 168 (269)
+||||||+++|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++ +++++ +.+.|.++++++.+ ++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~-s~~v~--d~~~L~~VA~ts~~------~~ 154 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEY-ARPVE--DIQAITQVASISAG------ND 154 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CHHHHHHHHHHhcc------Ch
Confidence 99999999999999999999999999999999999999999999999998 99986 57889999998754 68
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCC---Cc----cccCcEEEEEe
Q 024330 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM---PL----RVAPAKIACLD 241 (269)
Q Consensus 169 ~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~---~~----~~~~~kI~i~~ 241 (269)
+.+++++++|+..+. ++|. ++ +. ..+++..++++++|++|+++|.+++| |+ +++||||+++|
T Consensus 155 ~~l~~lv~eAv~~vg---~~g~--i~-----~~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d 223 (529)
T CHL00093 155 EEVGSMIADAIEKVG---REGV--IS-----LE-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTD 223 (529)
T ss_pred HHHHHHHHHHHHHhc---cCCc--ee-----ec-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhc
Confidence 999999999999984 3342 32 21 22334567899999999999999986 55 38999999999
Q ss_pred ccCCccc
Q 024330 242 FNLQKTK 248 (269)
Q Consensus 242 ~~Le~~k 248 (269)
|+|++.+
T Consensus 224 ~~le~~~ 230 (529)
T CHL00093 224 KKITLVQ 230 (529)
T ss_pred CCCCchH
Confidence 9999865
No 36
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.8e-45 Score=349.54 Aligned_cols=212 Identities=23% Similarity=0.350 Sum_probs=190.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCch----hHHHHHHHhhcccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDRE 88 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----~~ll~~~~~~~~~~ 88 (269)
...+|.+++..|++||+.++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 34578899999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCch
Q 024330 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (269)
Q Consensus 89 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~ 168 (269)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++ +++++ +.+.|.++++++++ .+
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~-s~~v~--~~~~l~~va~~s~~------~~ 155 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKI-AKKVT--SSKEIAQVATISAN------GD 155 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcC------CH
Confidence 99999999999999999999999999999999999999999999999998 88886 57789999998754 47
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCC-------CccccCcEEEEEe
Q 024330 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (269)
Q Consensus 169 ~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~-------~~~~~~~kI~i~~ 241 (269)
+.+++++++|+..+. ++|. ++++. .+..| .++++++|++|++++.+++| |++++||+|+++|
T Consensus 156 ~~l~~lv~eAv~~vg---~~g~--i~v~~---~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 224 (544)
T PRK12850 156 ESIGEMIAEAMDKVG---KEGV--ITVEE---AKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHE 224 (544)
T ss_pred HHHHHHHHHHHHHhc---ccCc--eeeEE---ccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEe
Confidence 899999999999984 3342 33322 22333 68999999999999999976 7889999999999
Q ss_pred ccC
Q 024330 242 FNL 244 (269)
Q Consensus 242 ~~L 244 (269)
+.+
T Consensus 225 ~~i 227 (544)
T PRK12850 225 KKI 227 (544)
T ss_pred ccc
Confidence 965
No 37
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=350.27 Aligned_cols=219 Identities=26% Similarity=0.391 Sum_probs=195.3
Q ss_pred hcccH--HHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCch----hHHHHHHHhhccc
Q 024330 14 RQAGQ--DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDR 87 (269)
Q Consensus 14 ~~~g~--~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----~~ll~~~~~~~~~ 87 (269)
..+|. ++|...+.+|+.|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+++++++|++
T Consensus 59 ~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~ 138 (600)
T PLN03167 59 LHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 138 (600)
T ss_pred eecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhh
Confidence 45677 69999999999999999999999999999999999999999999999999999996 8999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCc
Q 024330 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (269)
Q Consensus 88 ~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~ 167 (269)
++||||||+++|+++||+++.++++.|+||..|++||+.|.+.+++.|+++ +.+++ .+.|.++++++++ +
T Consensus 139 evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-s~~v~---d~~L~~vA~tS~~------~ 208 (600)
T PLN03167 139 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKM-SKEVE---DSELADVAAVSAG------N 208 (600)
T ss_pred hhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC---HHHHHHHHHHhcc------C
Confidence 999999999999999999999999999999999999999999999999988 88885 3569999998864 5
Q ss_pred hhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCccee-EEEEeEEEccccCCC-------CCCccccCcEEEE
Q 024330 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQ-------GMPLRVAPAKIAC 239 (269)
Q Consensus 168 ~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS-~lv~Giv~~~~~~~~-------~~~~~~~~~kI~i 239 (269)
++.|++|+++|+.++. ++|. +++ ..|++.+|+ ++++|++|+++|.+| +|+++++||||++
T Consensus 209 ~~~i~~liaeAv~~Vg---~~g~--i~v-------~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill 276 (600)
T PLN03167 209 NYEVGNMIAEAMSKVG---RKGV--VTL-------EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLL 276 (600)
T ss_pred cHHHHHHHHHHHHHhc---cCCc--EEe-------ccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEE
Confidence 6799999999999984 3342 222 268888887 999999999999999 5788899999999
Q ss_pred EeccCCccccccCcEEEECCHHHHHHHH
Q 024330 240 LDFNLQKTKMQLGVQVLVTDPRELEKIR 267 (269)
Q Consensus 240 ~~~~Le~~k~~~~~~v~i~~~~~~~~~~ 267 (269)
+|++ +++++|+..+.
T Consensus 277 ~d~~-------------i~~~~~l~~~l 291 (600)
T PLN03167 277 VDKK-------------ITNARDLIGIL 291 (600)
T ss_pred Eccc-------------cCCHHHHHHHH
Confidence 9985 45666665554
No 38
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.5e-44 Score=345.10 Aligned_cols=212 Identities=22% Similarity=0.348 Sum_probs=190.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccc----cCchhHHHHHHHhhcccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EHPAAKVLVELAELQDRE 88 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~----~hP~~~ll~~~~~~~~~~ 88 (269)
...+|.+++..|++|+..+++++++||||+||+|||+++.|+++|||||+||+++|++ +||.++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 4567789999999999999999999999999999999999999999999999999999 499999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCch
Q 024330 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (269)
Q Consensus 89 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~ 168 (269)
+||||||+++|+++||+++.+++++|+||+.|++||++|.+.++++|+++ +++++ +.+.+.++++++.+ .+
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~-s~~v~--~~~~l~~va~~s~~------~~ 155 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKR-AKPVA--SSAEIAQVGTISAN------GD 155 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHHHhhhcC------Ch
Confidence 99999999999999999999999999999999999999999999999998 88886 35668999987754 36
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCc-ceeEEEEeEEEccccCCCC-------CCccccCcEEEEE
Q 024330 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQG-------MPLRVAPAKIACL 240 (269)
Q Consensus 169 ~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~-~dS~lv~Giv~~~~~~~~~-------~~~~~~~~kI~i~ 240 (269)
+.+++++++|+..+. ++|. +++ . .|+.. .++++++|++|++++.+|+ |+..++||+|+++
T Consensus 156 ~~l~~li~eA~~~vg---~~g~--i~v-----~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~ 223 (545)
T PRK12852 156 AAIGKMIAQAMQKVG---NEGV--ITV-----E--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLH 223 (545)
T ss_pred HHHHHHHHHHHHHhc---cCCc--eee-----e--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEe
Confidence 899999999999984 3342 332 2 26665 7999999999999999997 7788999999999
Q ss_pred eccCC
Q 024330 241 DFNLQ 245 (269)
Q Consensus 241 ~~~Le 245 (269)
++.+.
T Consensus 224 d~~i~ 228 (545)
T PRK12852 224 EKKLS 228 (545)
T ss_pred cCccC
Confidence 98653
No 39
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=3.5e-43 Score=338.39 Aligned_cols=210 Identities=23% Similarity=0.344 Sum_probs=187.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhcccc----CchhHHHHHHHhhcccc
Q 024330 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVE----HPAAKVLVELAELQDRE 88 (269)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~----hP~~~ll~~~~~~~~~~ 88 (269)
...+|.+++..|++||..+++++++||||+||+|||.++.|+++|||||+||+++|.++ ||.++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 34678899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCch
Q 024330 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (269)
Q Consensus 89 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~ 168 (269)
+||||||+++|+++||+++.+++++|+||+.|++||++|.+.+++.|.++ +++++. .+.+.++++++.+ ++
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-a~~v~~--~~~l~~va~~s~~------~d 155 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKN-SKKVTS--NDEIAQVGTISAN------GD 155 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHh-cccCCC--HHHHHHHHHHHhc------Cc
Confidence 99999999999999999999999999999999999999999999999998 899863 4678999998754 45
Q ss_pred hHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCc-ceeEEEEeEEEccccCCCCC-------CccccCcEEEEE
Q 024330 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACL 240 (269)
Q Consensus 169 ~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~-~dS~lv~Giv~~~~~~~~~~-------~~~~~~~kI~i~ 240 (269)
+.+++++++|+..+. ++|. + .+... ++. .++++++|++|++++.+|+| +.++++|+|+++
T Consensus 156 ~~i~~lv~~Av~~vg---~~g~--i-----~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~ 223 (546)
T PRK14104 156 AEIGKFLADAMKKVG---NEGV--I-----TVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILIN 223 (546)
T ss_pred hHHHHHHHHHHHHhc---cCCc--e-----eeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEe
Confidence 889999999999884 3342 3 33322 234 58999999999999999977 567899999999
Q ss_pred ecc
Q 024330 241 DFN 243 (269)
Q Consensus 241 ~~~ 243 (269)
+..
T Consensus 224 d~~ 226 (546)
T PRK14104 224 EKK 226 (546)
T ss_pred hhh
Confidence 844
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-42 Score=307.86 Aligned_cols=242 Identities=28% Similarity=0.469 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhccccccCCchhHH
Q 024330 18 QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVV 97 (269)
Q Consensus 18 ~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~v 97 (269)
.++...|+.++..+.+.+++.+||.|..||++++.|++.+|+||.+.+++|+++||.+-++...+..||+..|||||++|
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~V 95 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVV 95 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEE
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCchhHHHHHHHH
Q 024330 98 IVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVE 177 (269)
Q Consensus 98 lL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~~~~l~~li~~ 177 (269)
+|+++|+++|..++..|+||..|.+||+.|.+.++++|+.. +.++ +++.|..+++|++++|+...-.+.+++++++
T Consensus 96 lligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~-~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~ 171 (520)
T KOG0359|consen 96 LLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKV-SREV---DRETLKDVARTSLRTKVHAELADVLTPIVVD 171 (520)
T ss_pred EeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhcc-ccch---hHHHHHHHHHHhhcCcccHHHHhHhHHHHHh
Confidence 99999999999999999999999999999999999999866 6666 4889999999999999988888999999999
Q ss_pred HHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCCccccccCcEEEE
Q 024330 178 AVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLV 257 (269)
Q Consensus 178 Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le~~k~~~~~~v~i 257 (269)
|+..+...+ ..+|+.++++.++..++..|+.+++|+++|++..||.||++++|+.|+++|.+|||+|++.++.|.+
T Consensus 172 aVl~i~~~~----~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffY 247 (520)
T KOG0359|consen 172 SVLCIRRQE----EPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFY 247 (520)
T ss_pred hheeeccCC----CCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhc
Confidence 999886322 2588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 024330 258 TDPRELEKIR 267 (269)
Q Consensus 258 ~~~~~~~~~~ 267 (269)
++++|.+++.
T Consensus 248 sta~ere~L~ 257 (520)
T KOG0359|consen 248 STAEEREVLV 257 (520)
T ss_pred cchhHHHHHH
Confidence 9999999875
No 41
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-27 Score=220.98 Aligned_cols=213 Identities=22% Similarity=0.349 Sum_probs=189.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCch----hHHHHHHHhhccc
Q 024330 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDR 87 (269)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----~~ll~~~~~~~~~ 87 (269)
++..+|.++|...+.++..|++++..|+||+|++++|-...|.+.|||||.|+.+++.+.+++ ++++++.+.+.++
T Consensus 17 k~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~ 96 (550)
T KOG0356|consen 17 KDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNE 96 (550)
T ss_pred cccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccC
Confidence 367899999999999999999999999999999999999999999999999999999999998 6889999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhhcccccCCc
Q 024330 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (269)
Q Consensus 88 ~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l~sk~~~~~ 167 (269)
..||||||+++|++++..++..-+.+|.+|..|.+|...|.+.+.+.|+++ ++++. ..+++.+++..+. ++
T Consensus 97 ~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~-sk~Vt--t~eeIaqVAtiSA------ng 167 (550)
T KOG0356|consen 97 EAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKM-SKPVT--TPEEIAQVATISA------NG 167 (550)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHh-CCCCC--CHHHHHHHHhhhc------CC
Confidence 999999999999999999999999999999999999999999999999998 99987 5889999998653 46
Q ss_pred hhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCc-ceeEEEEeEEEccccCCCCCCc-------cccCcEEEE
Q 024330 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGMPL-------RVAPAKIAC 239 (269)
Q Consensus 168 ~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~-~dS~lv~Giv~~~~~~~~~~~~-------~~~~~kI~i 239 (269)
+.++++++.+|+.++ +++|.+. + ..|.++ .+-++++|+-||++|.+||+.+ ++++|++++
T Consensus 168 D~~ig~li~~a~~kv---G~~GVIt-------v--~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll 235 (550)
T KOG0356|consen 168 DKEIGNLISDAMKKV---GRKGVIT-------V--KDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLL 235 (550)
T ss_pred cHHHHHHHHHHHHHh---CcCCeEE-------e--ecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhh
Confidence 899999999999998 4555432 2 244444 4678999999999999999864 467898888
Q ss_pred EeccCC
Q 024330 240 LDFNLQ 245 (269)
Q Consensus 240 ~~~~Le 245 (269)
.+..++
T Consensus 236 ~~kki~ 241 (550)
T KOG0356|consen 236 SEKKIS 241 (550)
T ss_pred hhhhhh
Confidence 876654
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.6e-22 Score=173.87 Aligned_cols=133 Identities=44% Similarity=0.628 Sum_probs=125.0
Q ss_pred Ccccccccchhh-----hcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCCCCeEEecCHHHHhhhccccCchhH
Q 024330 2 AISSQTLDILGE-----RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAK 76 (269)
Q Consensus 2 ~~~~~~~~~~~~-----~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ 76 (269)
+++..|+.++.+ +..|.++.++|+-|.++++.++++|+||+|++|+++.+.|++++|||| .|++++
T Consensus 6 ~~~~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~Iak 76 (400)
T KOG0357|consen 6 DEFGRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAK 76 (400)
T ss_pred HhhcCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHH
Confidence 456688888864 468999999999999999999999999999999999999999999999 789999
Q ss_pred HHHHHHhhccccccCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccc
Q 024330 77 VLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVE 144 (269)
Q Consensus 77 ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~ 144 (269)
++...+..|+.++|||||.+++|++++++++.+++.+|+||.+|..||..+.+.+++.|++. +.+++
T Consensus 77 Lmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i-~~~~e 143 (400)
T KOG0357|consen 77 LIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEI-SDPFE 143 (400)
T ss_pred HHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhh-ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999987 66665
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.61 E-value=1.5e-15 Score=129.94 Aligned_cols=93 Identities=34% Similarity=0.368 Sum_probs=85.6
Q ss_pred hhhHHHHHHhhcccccCCchhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCC
Q 024330 149 DSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM 228 (269)
Q Consensus 149 ~~l~~i~~t~l~sk~~~~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~ 228 (269)
+.|.++++|+++||+ +.|.+.+++++++|+..+.+. ++ .++.++|+|++.+||+++||++++|++|++++.+++|
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~--~~--~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPD--NR--MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhcc--CC--CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 468899999999999 899999999999999999642 12 5677899999999999999999999999999999999
Q ss_pred CccccCcEEEEEeccCCc
Q 024330 229 PLRVAPAKIACLDFNLQK 246 (269)
Q Consensus 229 ~~~~~~~kI~i~~~~Le~ 246 (269)
|++++||||++++|||++
T Consensus 77 ~~~~~n~~Ill~~~~le~ 94 (209)
T cd03333 77 PKRLENAKILLLDCPLEY 94 (209)
T ss_pred CeEcCCCcEEEEeCCeeE
Confidence 999999999999999998
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.51 E-value=3.6e-14 Score=125.43 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=80.4
Q ss_pred CchhHHHHHHHHHHHHhhccccCCcccccCc-ceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccC
Q 024330 166 GDSDFFANLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNL 244 (269)
Q Consensus 166 ~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~-~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~L 244 (269)
.|.++|++++++|+..+.+...++. .+|++ +|+|.+++||+++||++++|++|++.+.++.||++++||||++++|||
T Consensus 18 ~~~~~ls~l~v~Av~~v~~~~~~~~-~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~L 96 (261)
T cd03334 18 SWLDILLPLVWKAASNVKPDVRAGD-DMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPL 96 (261)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCC-ccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeee
Confidence 4789999999999999864221221 47765 599999999999999999999999999999999999999999999999
Q ss_pred CccccccCcEEEECCHHHHHHHHh
Q 024330 245 QKTKMQLGVQVLVTDPRELEKIRQ 268 (269)
Q Consensus 245 e~~k~~~~~~v~i~~~~~~~~~~~ 268 (269)
++++++. ++++++++.+
T Consensus 97 e~~~~~~-------~~~~~~~~~~ 113 (261)
T cd03334 97 EYQRVEN-------KLLSLDPVIL 113 (261)
T ss_pred ccccccC-------CHHHHHHHHH
Confidence 9999873 4677777643
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.00 E-value=1.1e-05 Score=83.77 Aligned_cols=86 Identities=20% Similarity=0.167 Sum_probs=75.4
Q ss_pred CchhHHHHHHHHHHHHhhccccCCcccccCcceeEEecCCCCcceeEEEEeEEEccccCCCCCCccccCcEEEEEeccCC
Q 024330 166 GDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQ 245 (269)
Q Consensus 166 ~~~~~l~~li~~Av~~v~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~lv~Giv~~~~~~~~~~~~~~~~~kI~i~~~~Le 245 (269)
.|.+.+..++++|...+++.-..|......++|+|.++.||+..||+++.|+++.+..++..|+.++++|||+++.++|+
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~le 411 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLE 411 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchh
Confidence 47888999999999999775443444555689999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 024330 246 KTKMQL 251 (269)
Q Consensus 246 ~~k~~~ 251 (269)
|++-..
T Consensus 412 yqrisn 417 (1598)
T KOG0230|consen 412 YQRISN 417 (1598)
T ss_pred hhhhhc
Confidence 997653
No 46
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=62.87 E-value=42 Score=22.95 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhh
Q 024330 102 ELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSM 159 (269)
Q Consensus 102 ~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l 159 (269)
.|++.+..+..+|+++.. .+...+...+..+.+.+..|+ +.+++..+++|+.
T Consensus 15 ~lf~~a~~~~~~~v~~~~---~~~~~v~~~~~~~N~~~~~PL---~~~Ev~~i~kSi~ 66 (71)
T PF08708_consen 15 TLFRLARRLAYRGVDQEE---QFRQEVLSLAQAINSNFSPPL---PESEVKAIAKSIA 66 (71)
T ss_pred HHHHHHHHHHHhCCCHhH---HHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHH
Confidence 466667777788998887 454444444444544433444 4778888999874
No 47
>PF07141 Phage_term_sma: Putative bacteriophage terminase small subunit; InterPro: IPR010789 This entry is represented by Bacteriophage 712, Gp1; it is a family of uncharacterised viral proteins. This family consists of several putative Lactococcus bacteriophage terminase small subunit proteins. The exact function of this family is unknown.
Probab=38.70 E-value=1.2e+02 Score=23.98 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=46.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHhhhhccccc---cCChhhhHHHHHHhhcccccC
Q 024330 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVE---KLGKDSLVNCAKTSMSSKLIG 165 (269)
Q Consensus 90 GDGttt~vlL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~---~~~~~~l~~i~~t~l~sk~~~ 165 (269)
|--|.-.-+-..-|+++...+|+.|-+...|+..+....+-.-+ +++-.-..++ +..+..|.-+|+++|.+|+-+
T Consensus 7 grptilpkmYtE~Lve~II~~IE~dt~~sEIc~~L~isrKtFye-Wrdtk~eA~eeA~~~rdd~LlmLArssLk~KLeg 84 (174)
T PF07141_consen 7 GRPTILPKMYTEPLVEQIIDKIESDTNDSEICTSLHISRKTFYE-WRDTKIEAYEEAKGIRDDNLLMLARSSLKSKLEG 84 (174)
T ss_pred CCCcccHHhhhhHHHHHHHHHHHcCCcHHHHHHHHhccHHHHHH-HHhhhHHHHHHHHhhccchHHHHHHHHHHhhcce
Confidence 33355555677889999999999999889998877654432222 2111000010 112456888999999888643
No 48
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=34.23 E-value=1.1e+02 Score=21.75 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.0
Q ss_pred CCCCceeeecCCCCeEEecCHHHHhhhccccCchhHHHHHHHhhcc
Q 024330 41 PVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQD 86 (269)
Q Consensus 41 P~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~ 86 (269)
+-+...++.++.|-+.+..-|+.|.+.++-.+-+..+...++...+
T Consensus 13 ~v~~~~Vl~~p~~~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~Y~ 58 (81)
T TIGR03859 13 RAQDCYVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFP 58 (81)
T ss_pred cccCcEEEEcCCceeeeChHHHHHHHHccCCCcHHHHHHHHHHHcC
Confidence 3455677888878889999999999999988877777777666554
No 49
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=32.66 E-value=74 Score=20.54 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHcCCChHhH
Q 024330 101 AELLKRANDLVRNKIHPTSI 120 (269)
Q Consensus 101 ~~Ll~~~~~li~~gi~p~~I 120 (269)
.+-|+-+.+|++.|++|..+
T Consensus 21 ~etL~ici~L~e~GVnPeaL 40 (48)
T PF12554_consen 21 RETLSICIELCENGVNPEAL 40 (48)
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 34455567777788888554
No 50
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=31.52 E-value=86 Score=23.07 Aligned_cols=29 Identities=21% Similarity=0.516 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHc-----CCChHhHHHHHHH
Q 024330 98 IVAAELLKRANDLVRN-----KIHPTSIISGYRL 126 (269)
Q Consensus 98 lL~~~Ll~~~~~li~~-----gi~p~~Ii~g~~~ 126 (269)
+++|+|+++|.+.-+. -+.|..+.++|++
T Consensus 56 vFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 56 VFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 6889999999987764 3678898888875
No 51
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=30.56 E-value=1.1e+02 Score=21.98 Aligned_cols=62 Identities=16% Similarity=0.347 Sum_probs=41.4
Q ss_pred cCCCCeEEecCHHHHhhh----cccc-Cch-hHHHHHHHhhccccccCCchhHHHHHHHHHHHHHHHH
Q 024330 50 DDIGDVTITNDGATILKM----LEVE-HPA-AKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLV 111 (269)
Q Consensus 50 ~~~g~~~iTnDg~tIl~~----l~~~-hP~-~~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li 111 (269)
...+++++|-||+|+.+- +++. .|- -+++.+.+....-+.-||..++..=...+-.....++
T Consensus 17 ~~~~~~~ltDdG~Tl~~L~~~G~~~~~s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~li 84 (90)
T PF08861_consen 17 KDDDSIRLTDDGYTLMNLSSSGIDIDRSKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRLI 84 (90)
T ss_pred ECCCeEEEecCHHHHHhHhHcCCccccchHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHHH
Confidence 334789999999999875 3343 222 4788888888888888887766554444444444443
No 52
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.62 E-value=79 Score=26.75 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhhccccccCChhhhHHHHHHhh
Q 024330 123 GYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSM 159 (269)
Q Consensus 123 g~~~a~~~~l~~l~~~~s~~v~~~~~~~l~~i~~t~l 159 (269)
-+++|++++.+.++.+++.+ +++.+..+|+++-
T Consensus 106 rl~R~LefV~efl~~i~as~----nD~s~~diakesY 138 (209)
T KOG4189|consen 106 RLNRALEFVIEFLDQIFAST----NDESLKDIAKESY 138 (209)
T ss_pred HHHhhHHHHHHHHHHHHcCC----CcchhhHHHHHHH
Confidence 45678889999988875554 3566778888774
No 53
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=25.97 E-value=97 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHcC-----CChHhHHHHHHHH
Q 024330 96 VVIVAAELLKRANDLVRNK-----IHPTSIISGYRLA 127 (269)
Q Consensus 96 ~vlL~~~Ll~~~~~li~~g-----i~p~~Ii~g~~~a 127 (269)
+=|++|+++++|....+.. +.|..|.++|++-
T Consensus 142 aKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rrL 178 (195)
T KOG3219|consen 142 AKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRRL 178 (195)
T ss_pred hhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 4478999999999887642 7899999999874
No 54
>PHA02591 hypothetical protein; Provisional
Probab=23.84 E-value=1.2e+02 Score=21.71 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHh
Q 024330 102 ELLKRANDLVRNKIHPTSIISGYRLAMREACKYVN 136 (269)
Q Consensus 102 ~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l~ 136 (269)
.+..-|.+|.+.|+...+|.+.+......+.+++.
T Consensus 47 d~~~vA~eL~eqGlSqeqIA~~LGVsqetVrKYL~ 81 (83)
T PHA02591 47 DLISVTHELARKGFTVEKIASLLGVSVRKVRRYLE 81 (83)
T ss_pred hHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 34556778888899999988877776666666654
No 55
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=23.79 E-value=1e+02 Score=19.11 Aligned_cols=32 Identities=9% Similarity=0.303 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCChHhHHHHHHHHHHHHHHHH
Q 024330 104 LKRANDLVRNKIHPTSIISGYRLAMREACKYV 135 (269)
Q Consensus 104 l~~~~~li~~gi~p~~Ii~g~~~a~~~~l~~l 135 (269)
++++.++.+.|++...|.+-+..+..-+..+|
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l 42 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTVYRYL 42 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHH
Confidence 56778888888877777766655544444443
No 56
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=23.20 E-value=1.3e+02 Score=21.77 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCceeeec
Q 024330 18 QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVD 50 (269)
Q Consensus 18 ~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~ 50 (269)
.+.+......+..+++.++..|||.|....+.+
T Consensus 45 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~ 77 (98)
T PF01230_consen 45 PEERAELMQLVQKVAKALKEAFGPDGYNVIINN 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeeccccc
Confidence 567778899999999999999999998866654
No 57
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=22.90 E-value=5.9e+02 Score=23.29 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC-CC------------------CCceeeecCCCCeEEecCHHHHhhhccc--cCchhHH
Q 024330 19 DVRTQNVMACQAVANIVKSSLG-PV------------------GLDKMLVDDIGDVTITNDGATILKMLEV--EHPAAKV 77 (269)
Q Consensus 19 ~~~~~n~~~~~~l~~~v~~slG-P~------------------G~~k~i~~~~g~~~iTnDg~tIl~~l~~--~hP~~~l 77 (269)
..+..+++-++.++.-+..-|| |. |..||=.+..+.+.++.+..+|-+.+.- ..|. +
T Consensus 150 ~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D~pe~I~kKI~~A~td~~-~- 227 (333)
T PRK12282 150 DDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSDDADTIKKKVMSMYTDPN-H- 227 (333)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeCCHHHHHHHHHhCcCCCC-C-
Confidence 3445588889999988887777 22 4445544444467888888888777642 1110 0
Q ss_pred HHHHHhhccccccCCchhHHH-HHHHH------HHHHHHHH-HcCCChHhHHHHHHHHHHHHHHHHhhhhccccccCChh
Q 024330 78 LVELAELQDREVGDGTTSVVI-VAAEL------LKRANDLV-RNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKD 149 (269)
Q Consensus 78 l~~~~~~~~~~~GDGttt~vl-L~~~L------l~~~~~li-~~gi~p~~Ii~g~~~a~~~~l~~l~~~~s~~v~~~~~~ 149 (269)
.+-+.-|+=....++ +...+ +++..+-. ..+++|.++.+.+-.+....++-+++. ...+.. +.+
T Consensus 228 ------~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer-~~~~~~-~~~ 299 (333)
T PRK12282 228 ------IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRER-RAEFAK-DPG 299 (333)
T ss_pred ------ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHc-CHH
Confidence 000111111112222 11111 23333222 346788888777766665555555442 112221 355
Q ss_pred hhHHHHH
Q 024330 150 SLVNCAK 156 (269)
Q Consensus 150 ~l~~i~~ 156 (269)
.+.+++.
T Consensus 300 ~~~~vl~ 306 (333)
T PRK12282 300 YVLEILK 306 (333)
T ss_pred HHHHHHH
Confidence 6666666
No 58
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=22.67 E-value=56 Score=27.21 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=14.5
Q ss_pred HHHHHHhhhhcCCCCCc
Q 024330 29 QAVANIVKSSLGPVGLD 45 (269)
Q Consensus 29 ~~l~~~v~~slGP~G~~ 45 (269)
..|++.++.||||.|..
T Consensus 21 ~eLa~ffrktYgptg~f 37 (196)
T PF02474_consen 21 VELAEFFRKTYGPTGAF 37 (196)
T ss_pred HHHHHHHHHhcCCCCcc
Confidence 46899999999999854
No 59
>PRK00756 acyltransferase NodA; Provisional
Probab=21.85 E-value=58 Score=26.96 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=14.5
Q ss_pred HHHHHHhhhhcCCCCCc
Q 024330 29 QAVANIVKSSLGPVGLD 45 (269)
Q Consensus 29 ~~l~~~v~~slGP~G~~ 45 (269)
.+|++.++.||||.|..
T Consensus 21 ~eLaeFfr~tYgptGaf 37 (196)
T PRK00756 21 AELAEFFRKTYGPTGAF 37 (196)
T ss_pred HHHHHHHHHhcCCcccc
Confidence 36899999999999954
No 60
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=20.70 E-value=2.4e+02 Score=20.14 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHcC-CChHhHHHHHHHH
Q 024330 99 VAAELLKRANDLVRNK-IHPTSIISGYRLA 127 (269)
Q Consensus 99 L~~~Ll~~~~~li~~g-i~p~~Ii~g~~~a 127 (269)
+...++.++..++++| .+|..|=.+++..
T Consensus 7 l~~~~~~ea~~l~~egvas~~~ID~~~~~~ 36 (97)
T PF00725_consen 7 LLAALLNEAARLVEEGVASPEDIDRAMRYG 36 (97)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 5678899999999999 5787776555543
No 61
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=20.61 E-value=93 Score=21.45 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=25.2
Q ss_pred HHHHhhh-hcCCCCCceeeecCCCCeEEecCHHHHhhhcc
Q 024330 31 VANIVKS-SLGPVGLDKMLVDDIGDVTITNDGATILKMLE 69 (269)
Q Consensus 31 l~~~v~~-slGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~ 69 (269)
|.+.++. .+|+.| ..+|++..|.++..+|-..+.++..
T Consensus 41 l~~~i~~~~~~~~g-~~~ivd~~G~ii~hp~~~~i~~~~~ 79 (81)
T PF02743_consen 41 LSEIISNIKFGNNG-YAFIVDKNGTIIAHPDKDLINKNKK 79 (81)
T ss_dssp HHHHHTTSBBTTTB-EEEEEETTSBBCE-SSGGCTTS---
T ss_pred eeeEEEeeEECCCE-EEEEEECCCCEEEeCChHHhccccc
Confidence 3444443 788776 4688888999999999888777653
No 62
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.60 E-value=1.2e+02 Score=26.53 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=34.6
Q ss_pred CcccccccchhhhcccHHHHHHHHHHHHHHHHHhhhhcCCCCCceeeecCC
Q 024330 2 AISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDI 52 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~ 52 (269)
.|..|...+|-+..||.+. .|.+.+++.+..-.+| |...+|++.+
T Consensus 159 ~~lePkl~ILDE~DSGLDI-----dalk~V~~~i~~lr~~-~~~~liITHy 203 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDI-----DALKIVAEGINALREE-GRGVLIITHY 203 (251)
T ss_pred HhcCCCEEEecCCCcCccH-----HHHHHHHHHHHHHhcC-CCeEEEEecH
Confidence 4556777788899999987 7788888888888887 6666776654
Done!