BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024331
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 317 bits (812), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 154/250 (61%), Positives = 184/250 (73%), Gaps = 13/250 (5%)
Query: 1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFC-STSPTKVAIADLGC 59
M+V QVLHM GG G SYA NS +Q +VISI KPITE A+T L+ T T++AIADLGC
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60 SSGPNTLLVASELIKVVNKICDKLGSQ-LPEFQVFLNDLPGNDFNTIFRSLASFQKILRK 118
SSGPN L +ELIK V ++ K+G + PE+Q+FLNDLPGNDFN IFRSL +
Sbjct: 61 SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV--- 117
Query: 119 QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMA 178
G CF GVPGSFYGRLFPRN++H HSSYSL WLSQVP G+ESNKGNI+MA
Sbjct: 118 --------DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMA 169
Query: 179 STSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELL 238
+T P VL AYY+QFQ D +LFL+CR++E+V GRMVLT LGR+S+D +S ECC IW+LL
Sbjct: 170 NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLL 229
Query: 239 ATALNNMVSE 248
A ALN MVSE
Sbjct: 230 AMALNQMVSE 239
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 158/259 (61%), Gaps = 18/259 (6%)
Query: 1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK---VAIADL 57
ME+ +VL MNGG G TSYA NS + V++ KP+ E+ + +L + P + +ADL
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58 GCSSGPNTLLVASELIKVVNKICDKLGSQL--PEFQVFLNDLPGNDFNTIFRSLASFQKI 115
GC+SGPNTLL ++++ ++K+ + ++L P Q+FLNDL NDFN++F+ L SF +
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGL------E 169
L K+ G G+ C +PGSFY RLFP S+H HS Y LQWLSQVP GL
Sbjct: 121 LEKENGRKIGS---CLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIG 177
Query: 170 SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSK 229
+NKG+I+ + S V AY +QF +DF+ FL+ SEEL + GRM+LT + + + +
Sbjct: 178 TNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARN 237
Query: 230 ECCYIWELLATALNNMVSE 248
+LL A+N++V E
Sbjct: 238 AI----DLLEMAINDLVVE 252
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 158/261 (60%), Gaps = 23/261 (8%)
Query: 1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK---VAIADL 57
ME+ +VLHMNGG G TSYA NS +I + KP+ E+ + +L + P + DL
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSYNLFLIRV-KPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58 GCSSGPNTLLVASELIKVVNKICDKLGSQL--PEFQVFLNDLPGNDFNTIFRSLASFQKI 115
GC+SGPNT ++++ ++K+ + ++L P Q+FLNDL NDFN++F+ L SF +
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES----- 170
L K+ G G+ C +PGSFY RLFP S+H HS Y L WLSQVP GL +
Sbjct: 120 LEKENGRKIGS---CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGIS 176
Query: 171 -NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQ--DPS 227
NKG I+ + S P + AY +QF +DF+ FL+ SEEL++ GRM+LTF+ ++ + P+
Sbjct: 177 VNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPN 236
Query: 228 SKECCYIWELLATALNNMVSE 248
S +LL ++N++V E
Sbjct: 237 S------MDLLEMSINDLVIE 251
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 126/237 (53%), Gaps = 9/237 (3%)
Query: 1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAM--TKLFCSTSPTKVAIADLG 58
M++ ++L M GG G SYA+NSL Q + EE + L S SP DLG
Sbjct: 1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 59 CSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK 118
CSSG NT+ + ++K ++K D G PEF F +DLP NDFNT+F+ L
Sbjct: 61 CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120
Query: 119 QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NK 172
+ A+ F GVPGSFY RLFP ++ FHS++SL WLSQVP+ + N+
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180
Query: 173 GNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSK 229
G +F+ TAY QFQ D + FL+ R+ E+ G M L LGR S DP+ +
Sbjct: 181 GRVFIHGAGEKTT-TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQ 236
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 138 SFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP 182
S YG FP + L H Y + W+S G ++N F+ T P
Sbjct: 89 SIYGETFPDENFKLKH--YGIGWVSMANAGPDTNGSQFFITLTKP 131
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 138 SFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP 182
S YG FP + L H Y + W+S G ++N F+ T P
Sbjct: 81 SIYGETFPDENFKLKH--YGIGWVSMANAGPDTNGSQFFITLTKP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,345,568
Number of Sequences: 62578
Number of extensions: 273515
Number of successful extensions: 770
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 6
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)