Query 024331
Match_columns 269
No_of_seqs 129 out of 487
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 7E-83 1.5E-87 604.6 25.9 261 1-267 13-288 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 4.3E-74 9.4E-79 538.6 20.1 224 36-267 1-232 (334)
3 TIGR02072 BioC biotin biosynth 99.2 5.2E-11 1.1E-15 104.1 9.8 134 15-222 6-139 (240)
4 PRK10258 biotin biosynthesis p 99.2 5.8E-11 1.2E-15 106.4 9.0 127 16-222 18-144 (251)
5 COG2226 UbiE Methylase involve 99.1 1.9E-10 4.1E-15 103.7 7.7 112 50-224 51-162 (238)
6 PRK14103 trans-aconitate 2-met 99.0 6E-10 1.3E-14 100.3 8.3 126 15-221 4-129 (255)
7 PLN02233 ubiquinone biosynthes 98.9 1.4E-08 3.1E-13 92.3 12.2 111 50-223 73-187 (261)
8 PRK01683 trans-aconitate 2-met 98.9 4.2E-09 9.1E-14 94.6 8.0 127 15-220 6-132 (258)
9 PF08241 Methyltransf_11: Meth 98.9 3.3E-09 7.1E-14 79.2 5.7 73 55-161 1-73 (95)
10 PF01209 Ubie_methyltran: ubiE 98.8 4.5E-09 9.7E-14 94.4 5.7 111 50-223 47-158 (233)
11 PTZ00098 phosphoethanolamine N 98.8 1.8E-07 4E-12 85.1 14.1 110 50-223 52-161 (263)
12 TIGR00740 methyltransferase, p 98.8 1.1E-07 2.5E-12 84.6 12.2 113 50-222 53-165 (239)
13 PLN02244 tocopherol O-methyltr 98.7 2.5E-07 5.4E-12 87.3 12.8 110 50-222 118-227 (340)
14 PRK15451 tRNA cmo(5)U34 methyl 98.7 2.6E-07 5.6E-12 83.2 11.7 83 50-162 56-139 (247)
15 PRK06922 hypothetical protein; 98.6 1.5E-07 3.2E-12 95.4 8.7 116 50-218 418-537 (677)
16 TIGR00477 tehB tellurite resis 98.6 1.9E-07 4.1E-12 81.3 7.9 104 50-218 30-133 (195)
17 TIGR02752 MenG_heptapren 2-hep 98.6 2.3E-07 5E-12 81.8 8.5 110 50-222 45-155 (231)
18 PRK11036 putative S-adenosyl-L 98.6 2E-07 4.3E-12 84.0 8.2 82 49-163 43-127 (255)
19 PLN02336 phosphoethanolamine N 98.5 1.1E-06 2.3E-11 86.1 13.2 108 50-223 266-374 (475)
20 PRK08317 hypothetical protein; 98.5 3.8E-06 8.2E-11 73.0 13.8 108 50-221 19-127 (241)
21 PRK11207 tellurite resistance 98.5 5.8E-07 1.3E-11 78.3 8.4 79 51-162 31-109 (197)
22 PLN02336 phosphoethanolamine N 98.5 9.6E-07 2.1E-11 86.3 10.5 103 51-219 38-143 (475)
23 PLN02396 hexaprenyldihydroxybe 98.5 5.7E-07 1.2E-11 84.6 8.5 108 50-222 131-239 (322)
24 PRK05785 hypothetical protein; 98.5 1.1E-06 2.5E-11 78.3 10.0 74 51-163 52-125 (226)
25 PRK11088 rrmA 23S rRNA methylt 98.4 1.2E-06 2.6E-11 79.8 10.1 75 50-156 85-159 (272)
26 PF12847 Methyltransf_18: Meth 98.4 2.4E-06 5.1E-11 66.4 10.2 108 51-218 2-111 (112)
27 KOG2940 Predicted methyltransf 98.4 4.2E-07 9E-12 81.7 6.5 128 51-254 73-201 (325)
28 smart00828 PKS_MT Methyltransf 98.4 1.4E-06 3E-11 76.5 9.8 106 53-221 2-107 (224)
29 PRK12335 tellurite resistance 98.4 7.1E-07 1.5E-11 82.1 8.1 103 51-218 121-223 (287)
30 PRK15068 tRNA mo(5)U34 methylt 98.4 8.8E-07 1.9E-11 83.2 7.3 108 51-222 123-230 (322)
31 PF13489 Methyltransf_23: Meth 98.4 8.5E-07 1.8E-11 72.7 6.2 100 48-222 20-119 (161)
32 PRK00121 trmB tRNA (guanine-N( 98.3 1.5E-06 3.2E-11 76.1 7.6 159 24-251 14-175 (202)
33 PF13847 Methyltransf_31: Meth 98.3 3.1E-06 6.7E-11 70.1 9.0 105 50-220 3-112 (152)
34 PRK06202 hypothetical protein; 98.3 9.5E-06 2.1E-10 72.0 12.6 86 49-163 59-144 (232)
35 PRK11873 arsM arsenite S-adeno 98.3 2.2E-06 4.7E-11 77.7 8.0 82 50-161 77-159 (272)
36 smart00138 MeTrc Methyltransfe 98.3 8.7E-06 1.9E-10 74.3 11.7 97 49-162 98-217 (264)
37 TIGR00138 gidB 16S rRNA methyl 98.3 9.2E-06 2E-10 70.2 10.9 131 51-262 43-173 (181)
38 PLN02490 MPBQ/MSBQ methyltrans 98.3 3E-06 6.6E-11 80.3 8.5 79 50-161 113-191 (340)
39 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 3.6E-05 7.7E-10 66.6 14.4 108 50-221 39-146 (223)
40 TIGR03438 probable methyltrans 98.3 5.2E-06 1.1E-10 77.0 9.6 129 34-222 48-181 (301)
41 PF08242 Methyltransf_12: Meth 98.2 6.5E-07 1.4E-11 68.6 2.8 76 55-161 1-79 (99)
42 PF03848 TehB: Tellurite resis 98.2 2.2E-06 4.8E-11 75.1 6.2 79 50-162 30-108 (192)
43 KOG1541 Predicted protein carb 98.2 8.5E-06 1.9E-10 72.9 9.9 139 15-219 20-161 (270)
44 PF13649 Methyltransf_25: Meth 98.2 1.2E-06 2.6E-11 67.7 3.7 81 54-163 1-83 (101)
45 COG4106 Tam Trans-aconitate me 98.2 2.2E-06 4.7E-11 76.4 5.4 105 50-223 30-134 (257)
46 PRK00216 ubiE ubiquinone/menaq 98.2 8.8E-06 1.9E-10 71.1 9.3 109 51-222 52-162 (239)
47 TIGR02716 C20_methyl_CrtF C-20 98.2 2.3E-05 4.9E-10 72.5 12.1 112 49-223 148-259 (306)
48 KOG1540 Ubiquinone biosynthesi 98.2 7.5E-06 1.6E-10 74.6 8.5 120 50-223 100-219 (296)
49 PRK11188 rrmJ 23S rRNA methylt 98.1 1.3E-05 2.7E-10 70.8 9.3 110 50-221 51-168 (209)
50 TIGR00452 methyltransferase, p 98.1 8.2E-06 1.8E-10 76.6 8.1 108 51-222 122-229 (314)
51 TIGR00091 tRNA (guanine-N(7)-) 98.1 1.1E-05 2.3E-10 70.1 7.6 81 51-161 17-100 (194)
52 PTZ00146 fibrillarin; Provisio 98.1 0.00013 2.8E-09 67.9 14.3 141 50-265 132-276 (293)
53 PRK00107 gidB 16S rRNA methylt 98.0 2.8E-05 6E-10 67.7 8.8 101 50-218 45-145 (187)
54 PRK14121 tRNA (guanine-N(7)-)- 98.0 1.9E-05 4.1E-10 76.1 8.0 110 52-218 124-235 (390)
55 PF00891 Methyltransf_2: O-met 98.0 3.8E-05 8.2E-10 68.4 8.9 104 49-224 99-205 (241)
56 PRK08287 cobalt-precorrin-6Y C 98.0 0.00017 3.6E-09 61.9 12.6 35 50-99 31-65 (187)
57 TIGR03587 Pse_Me-ase pseudamin 97.9 3.6E-05 7.8E-10 67.7 8.2 105 14-161 14-118 (204)
58 PRK04266 fibrillarin; Provisio 97.9 0.00011 2.3E-09 65.9 11.2 52 205-264 163-214 (226)
59 PRK11705 cyclopropane fatty ac 97.9 0.0001 2.3E-09 70.8 10.9 106 50-223 167-272 (383)
60 PF05148 Methyltransf_8: Hypot 97.9 2.9E-05 6.2E-10 69.0 6.5 93 48-222 70-162 (219)
61 KOG3010 Methyltransferase [Gen 97.9 6.1E-05 1.3E-09 68.1 8.3 129 52-251 35-176 (261)
62 TIGR02469 CbiT precorrin-6Y C5 97.8 0.00019 4.1E-09 56.1 9.8 35 51-100 20-54 (124)
63 PRK09489 rsmC 16S ribosomal RN 97.8 6.9E-05 1.5E-09 71.1 8.6 107 52-219 198-304 (342)
64 TIGR03534 RF_mod_PrmC protein- 97.8 0.00013 2.9E-09 64.5 9.9 127 50-218 87-217 (251)
65 PRK15001 SAM-dependent 23S rib 97.8 0.00013 2.9E-09 70.1 10.4 81 52-160 230-310 (378)
66 PF05175 MTS: Methyltransferas 97.8 0.00016 3.4E-09 61.5 9.7 75 50-155 31-105 (170)
67 KOG4300 Predicted methyltransf 97.8 0.00018 4E-09 63.9 9.9 109 51-222 77-186 (252)
68 PRK13944 protein-L-isoaspartat 97.8 0.00022 4.8E-09 62.4 9.9 81 51-160 73-154 (205)
69 COG4123 Predicted O-methyltran 97.8 7.8E-05 1.7E-09 67.8 7.2 125 50-218 44-170 (248)
70 TIGR03533 L3_gln_methyl protei 97.7 0.00019 4E-09 66.3 9.7 123 51-218 122-251 (284)
71 TIGR00080 pimt protein-L-isoas 97.7 0.00039 8.5E-09 61.1 11.0 79 50-157 77-155 (215)
72 PF03141 Methyltransf_29: Puta 97.7 0.00012 2.7E-09 72.1 7.9 50 140-222 173-223 (506)
73 cd02440 AdoMet_MTases S-adenos 97.7 0.00038 8.2E-09 50.9 8.8 78 53-161 1-79 (107)
74 PRK13942 protein-L-isoaspartat 97.6 0.00063 1.4E-08 60.0 11.2 80 50-158 76-155 (212)
75 TIGR03840 TMPT_Se_Te thiopurin 97.6 0.00038 8.2E-09 61.8 9.6 34 50-100 34-67 (213)
76 TIGR02021 BchM-ChlM magnesium 97.6 0.00058 1.3E-08 59.9 10.5 77 50-161 55-132 (219)
77 TIGR00537 hemK_rel_arch HemK-r 97.6 0.00037 8.1E-09 59.3 8.2 123 51-221 20-143 (179)
78 KOG1270 Methyltransferases [Co 97.5 0.00052 1.1E-08 62.9 9.3 107 52-222 91-199 (282)
79 TIGR01983 UbiG ubiquinone bios 97.5 0.00038 8.2E-09 60.8 8.0 106 50-221 45-152 (224)
80 COG2230 Cfa Cyclopropane fatty 97.5 0.00051 1.1E-08 63.6 9.0 109 48-223 70-181 (283)
81 PF08003 Methyltransf_9: Prote 97.5 0.0006 1.3E-08 63.7 9.3 109 51-223 116-224 (315)
82 PRK00312 pcm protein-L-isoaspa 97.5 0.001 2.2E-08 58.1 10.3 79 50-160 78-156 (212)
83 TIGR02081 metW methionine bios 97.4 0.00047 1E-08 59.5 7.5 75 51-163 14-90 (194)
84 PRK11805 N5-glutamine S-adenos 97.4 0.00062 1.3E-08 63.6 8.8 74 52-155 135-208 (307)
85 PRK14967 putative methyltransf 97.4 0.0012 2.7E-08 58.3 10.1 124 51-220 37-161 (223)
86 COG2227 UbiG 2-polyprenyl-3-me 97.4 0.00034 7.4E-09 63.2 6.3 107 50-222 59-165 (243)
87 TIGR00536 hemK_fam HemK family 97.4 0.001 2.2E-08 61.2 9.6 126 52-218 116-244 (284)
88 KOG3045 Predicted RNA methylas 97.4 0.00056 1.2E-08 62.7 7.3 51 137-221 217-267 (325)
89 TIGR00406 prmA ribosomal prote 97.3 0.0015 3.3E-08 60.2 10.1 34 51-100 160-193 (288)
90 PRK07580 Mg-protoporphyrin IX 97.3 0.0025 5.5E-08 55.7 10.4 76 50-160 63-139 (230)
91 TIGR00438 rrmJ cell division p 97.3 0.0015 3.2E-08 56.1 8.7 107 50-218 32-146 (188)
92 PF06080 DUF938: Protein of un 97.3 0.01 2.2E-07 52.6 14.0 172 30-265 8-197 (204)
93 PRK14966 unknown domain/N5-glu 97.3 0.0015 3.4E-08 63.6 9.7 73 51-155 252-326 (423)
94 PRK13255 thiopurine S-methyltr 97.3 0.0033 7.1E-08 56.0 11.0 49 32-100 22-70 (218)
95 PRK01544 bifunctional N5-gluta 97.3 0.001 2.2E-08 66.3 8.4 75 51-155 139-213 (506)
96 PRK05134 bifunctional 3-demeth 97.2 0.001 2.2E-08 58.7 7.2 105 50-221 48-154 (233)
97 PF02353 CMAS: Mycolic acid cy 97.2 0.0013 2.9E-08 60.5 8.2 109 50-223 62-171 (273)
98 PRK09328 N5-glutamine S-adenos 97.2 0.0013 2.9E-08 59.2 8.0 36 50-100 108-143 (275)
99 TIGR00563 rsmB ribosomal RNA s 97.2 0.0021 4.5E-08 62.5 9.6 129 51-222 239-372 (426)
100 KOG2361 Predicted methyltransf 97.2 0.0031 6.7E-08 57.2 9.6 149 18-222 31-187 (264)
101 PRK10901 16S rRNA methyltransf 97.1 0.0035 7.6E-08 61.0 10.6 127 51-222 245-376 (427)
102 PRK14968 putative methyltransf 97.0 0.0051 1.1E-07 51.8 9.2 125 51-219 24-149 (188)
103 PLN03075 nicotianamine synthas 97.0 0.01 2.3E-07 55.4 11.8 111 50-218 123-233 (296)
104 PRK14903 16S rRNA methyltransf 96.9 0.0033 7.2E-08 61.4 8.5 130 51-223 238-371 (431)
105 PRK14901 16S rRNA methyltransf 96.9 0.0071 1.5E-07 59.0 10.6 127 51-222 253-388 (434)
106 PHA03411 putative methyltransf 96.9 0.0031 6.8E-08 58.3 7.5 117 51-222 65-187 (279)
107 PLN02232 ubiquinone biosynthes 96.8 0.002 4.4E-08 54.2 4.9 54 136-222 32-85 (160)
108 PF13659 Methyltransf_26: Meth 96.8 0.0027 5.9E-08 49.5 5.3 113 52-219 2-116 (117)
109 PLN02585 magnesium protoporphy 96.7 0.011 2.4E-07 55.6 9.9 77 50-160 144-224 (315)
110 PRK01544 bifunctional N5-gluta 96.7 0.0062 1.4E-07 60.7 8.6 105 23-160 323-429 (506)
111 COG2890 HemK Methylase of poly 96.7 0.012 2.5E-07 54.4 9.7 75 53-170 113-189 (280)
112 PRK00377 cbiT cobalt-precorrin 96.7 0.013 2.8E-07 50.8 9.4 37 50-100 40-76 (198)
113 PF05401 NodS: Nodulation prot 96.7 0.0045 9.8E-08 54.6 6.4 103 50-219 43-147 (201)
114 PRK14902 16S rRNA methyltransf 96.7 0.01 2.2E-07 58.0 9.6 128 51-222 251-383 (444)
115 PRK00517 prmA ribosomal protei 96.7 0.013 2.8E-07 52.8 9.5 35 50-100 119-153 (250)
116 PRK14904 16S rRNA methyltransf 96.6 0.015 3.2E-07 56.9 10.2 127 51-222 251-381 (445)
117 TIGR01177 conserved hypothetic 96.5 0.021 4.5E-07 53.6 10.3 115 51-221 183-297 (329)
118 COG2264 PrmA Ribosomal protein 96.5 0.02 4.4E-07 53.6 10.0 100 50-218 162-263 (300)
119 PF02390 Methyltransf_4: Putat 96.5 0.0058 1.3E-07 53.5 6.1 80 53-160 20-100 (195)
120 TIGR03704 PrmC_rel_meth putati 96.5 0.019 4.2E-07 52.0 9.6 35 51-100 87-121 (251)
121 KOG2904 Predicted methyltransf 96.5 0.031 6.7E-07 51.9 10.6 153 34-223 132-290 (328)
122 PF03291 Pox_MCEL: mRNA cappin 96.5 0.013 2.8E-07 55.6 8.5 116 50-219 62-187 (331)
123 KOG1500 Protein arginine N-met 96.3 0.027 5.9E-07 53.7 9.4 149 50-262 177-339 (517)
124 COG2813 RsmC 16S RNA G1207 met 96.3 0.027 5.9E-07 52.6 9.3 69 52-154 160-230 (300)
125 KOG1331 Predicted methyltransf 96.2 0.0064 1.4E-07 56.3 4.9 135 17-226 17-151 (293)
126 PRK13943 protein-L-isoaspartat 96.2 0.059 1.3E-06 50.9 11.1 78 50-156 80-157 (322)
127 PRK07402 precorrin-6B methylas 96.2 0.015 3.2E-07 50.2 6.6 35 50-99 40-74 (196)
128 TIGR00446 nop2p NOL1/NOP2/sun 96.1 0.034 7.3E-07 50.7 9.1 128 51-222 72-203 (264)
129 COG2242 CobL Precorrin-6B meth 96.1 0.07 1.5E-06 46.7 10.6 119 50-250 34-153 (187)
130 TIGR03439 methyl_EasF probable 96.0 0.059 1.3E-06 50.9 10.4 69 49-141 75-143 (319)
131 smart00650 rADc Ribosomal RNA 96.0 0.046 1E-06 46.0 8.6 71 51-155 14-84 (169)
132 PF07021 MetW: Methionine bios 96.0 0.021 4.5E-07 50.2 6.6 75 51-163 14-90 (193)
133 PF01135 PCMT: Protein-L-isoas 95.9 0.042 9E-07 48.7 8.2 20 50-69 72-91 (209)
134 PF05891 Methyltransf_PK: AdoM 95.8 0.0017 3.6E-08 58.0 -0.8 103 50-218 55-161 (218)
135 KOG1499 Protein arginine N-met 95.7 0.038 8.3E-07 52.5 7.6 105 50-215 60-164 (346)
136 PRK13256 thiopurine S-methyltr 95.7 0.04 8.7E-07 49.6 7.4 135 32-221 28-166 (226)
137 KOG3178 Hydroxyindole-O-methyl 95.6 0.063 1.4E-06 51.1 8.7 142 9-223 138-280 (342)
138 PF06325 PrmA: Ribosomal prote 95.5 0.091 2E-06 49.1 9.5 34 51-100 162-195 (295)
139 PRK13168 rumA 23S rRNA m(5)U19 95.3 0.051 1.1E-06 53.2 7.4 105 51-202 298-414 (443)
140 PLN02672 methionine S-methyltr 95.3 0.043 9.4E-07 59.3 7.2 35 51-100 119-153 (1082)
141 PRK00811 spermidine synthase; 95.3 0.11 2.4E-06 47.8 9.1 38 48-100 74-111 (283)
142 PRK03612 spermidine synthase; 95.2 0.12 2.5E-06 51.9 9.4 50 206-267 403-452 (521)
143 PHA03412 putative methyltransf 94.9 0.042 9.2E-07 49.9 5.1 71 51-154 50-120 (241)
144 COG1352 CheR Methylase of chem 94.9 0.21 4.6E-06 46.0 9.7 45 50-100 96-140 (268)
145 PLN02781 Probable caffeoyl-CoA 94.5 0.26 5.6E-06 44.2 9.1 36 50-99 68-103 (234)
146 PF05185 PRMT5: PRMT5 arginine 94.5 0.045 9.8E-07 53.9 4.5 79 50-154 186-264 (448)
147 COG2518 Pcm Protein-L-isoaspar 94.4 0.13 2.8E-06 45.8 6.8 20 50-69 72-91 (209)
148 PF10294 Methyltransf_16: Puta 94.4 0.11 2.3E-06 44.5 5.9 35 50-99 45-79 (173)
149 PRK15128 23S rRNA m(5)C1962 me 94.3 0.63 1.4E-05 45.2 11.8 116 51-219 221-340 (396)
150 KOG1975 mRNA cap methyltransfe 94.3 0.22 4.8E-06 47.3 8.2 61 130-221 175-240 (389)
151 PRK00274 ksgA 16S ribosomal RN 94.1 0.051 1.1E-06 49.7 3.7 85 5-104 7-103 (272)
152 PRK04457 spermidine synthase; 94.1 0.059 1.3E-06 49.2 4.0 37 49-100 65-101 (262)
153 PF05724 TPMT: Thiopurine S-me 94.1 0.5 1.1E-05 42.1 9.9 128 32-221 22-158 (218)
154 COG0220 Predicted S-adenosylme 93.9 0.28 6E-06 44.2 7.8 114 52-218 50-164 (227)
155 TIGR00417 speE spermidine synt 93.5 0.4 8.7E-06 43.7 8.5 37 49-100 71-107 (270)
156 PLN02366 spermidine synthase 93.5 0.4 8.7E-06 45.0 8.6 38 48-100 89-126 (308)
157 PRK11783 rlmL 23S rRNA m(2)G24 92.8 0.4 8.8E-06 49.8 8.1 117 51-219 539-657 (702)
158 PF11968 DUF3321: Putative met 92.5 0.22 4.8E-06 44.6 5.0 137 5-222 4-153 (219)
159 TIGR00478 tly hemolysin TlyA f 92.4 0.27 5.8E-06 44.3 5.5 35 50-100 75-109 (228)
160 PRK01581 speE spermidine synth 92.0 0.91 2E-05 43.8 8.9 38 48-100 148-185 (374)
161 PRK10611 chemotaxis methyltran 90.6 0.56 1.2E-05 43.6 5.8 44 50-100 115-158 (287)
162 PRK11727 23S rRNA mA1618 methy 90.4 0.53 1.2E-05 44.5 5.5 77 50-154 114-195 (321)
163 PF13679 Methyltransf_32: Meth 89.6 0.54 1.2E-05 38.5 4.4 58 29-99 6-63 (141)
164 PRK11933 yebU rRNA (cytosine-C 89.1 1.6 3.4E-05 43.5 7.9 129 51-222 114-246 (470)
165 TIGR00755 ksgA dimethyladenosi 89.0 1.2 2.7E-05 39.9 6.6 20 50-69 29-48 (253)
166 KOG3191 Predicted N6-DNA-methy 88.1 9.1 0.0002 33.8 11.0 142 32-222 28-172 (209)
167 PLN02589 caffeoyl-CoA O-methyl 87.9 1.3 2.8E-05 40.3 6.0 36 50-99 79-114 (247)
168 PLN02476 O-methyltransferase 87.5 1.7 3.6E-05 40.4 6.5 37 50-100 118-154 (278)
169 PRK14896 ksgA 16S ribosomal RN 87.5 0.9 1.9E-05 41.1 4.7 48 50-101 29-88 (258)
170 KOG2899 Predicted methyltransf 87.4 2.8 6E-05 38.6 7.6 28 195-222 186-213 (288)
171 PF09243 Rsm22: Mitochondrial 87.1 5.1 0.00011 36.8 9.5 17 50-66 33-49 (274)
172 PF01728 FtsJ: FtsJ-like methy 86.9 1 2.3E-05 38.0 4.5 37 50-100 23-59 (181)
173 PRK03522 rumB 23S rRNA methylu 86.8 0.92 2E-05 42.3 4.4 33 51-100 174-206 (315)
174 COG4122 Predicted O-methyltran 86.5 2 4.4E-05 38.5 6.3 37 50-100 59-95 (219)
175 COG0144 Sun tRNA and rRNA cyto 86.5 7.4 0.00016 37.1 10.5 132 51-223 157-293 (355)
176 COG2263 Predicted RNA methylas 86.0 0.43 9.4E-06 42.0 1.7 20 50-69 45-64 (198)
177 PRK10909 rsmD 16S rRNA m(2)G96 83.6 1.1 2.4E-05 39.3 3.2 19 51-69 54-72 (199)
178 COG4976 Predicted methyltransf 83.1 0.83 1.8E-05 41.7 2.2 28 195-222 202-229 (287)
179 COG0500 SmtA SAM-dependent met 83.0 8.3 0.00018 28.3 7.5 20 204-223 141-160 (257)
180 PRK04148 hypothetical protein; 83.0 2.2 4.9E-05 35.4 4.6 20 50-69 16-36 (134)
181 PF08123 DOT1: Histone methyla 82.1 2.6 5.7E-05 37.2 5.0 53 50-102 42-115 (205)
182 PTZ00338 dimethyladenosine tra 81.7 3.8 8.3E-05 38.1 6.2 52 50-102 36-99 (294)
183 KOG1271 Methyltransferases [Ge 81.7 1.8 4E-05 38.3 3.7 40 28-69 47-86 (227)
184 PRK01747 mnmC bifunctional tRN 81.2 4.1 9E-05 41.8 6.8 142 49-216 56-204 (662)
185 KOG1269 SAM-dependent methyltr 80.3 7.1 0.00015 37.6 7.6 54 135-221 165-218 (364)
186 COG2519 GCD14 tRNA(1-methylade 80.0 21 0.00046 32.8 10.2 125 51-256 95-219 (256)
187 PF01234 NNMT_PNMT_TEMT: NNMT/ 79.0 23 0.0005 32.5 10.3 47 148-223 158-204 (256)
188 PF01269 Fibrillarin: Fibrilla 78.1 50 0.0011 29.9 11.8 54 193-261 160-213 (229)
189 TIGR02085 meth_trns_rumB 23S r 77.4 2.9 6.4E-05 40.0 4.1 18 52-69 235-252 (374)
190 TIGR00095 RNA methyltransferas 74.5 3.3 7.2E-05 35.8 3.3 34 51-100 50-83 (189)
191 PRK11760 putative 23S rRNA C24 74.3 4.9 0.00011 38.6 4.6 50 30-96 186-240 (357)
192 COG4627 Uncharacterized protei 72.9 3.7 8E-05 35.4 3.1 56 135-221 34-89 (185)
193 PRK04338 N(2),N(2)-dimethylgua 71.5 5.6 0.00012 38.5 4.4 64 13-100 29-92 (382)
194 PRK05031 tRNA (uracil-5-)-meth 71.2 15 0.00032 35.1 7.1 44 52-97 208-263 (362)
195 PF12147 Methyltransf_20: Puta 70.8 11 0.00023 35.6 5.9 53 31-98 118-170 (311)
196 PF05219 DREV: DREV methyltran 69.6 13 0.00028 34.3 6.1 20 50-69 94-113 (265)
197 TIGR00479 rumA 23S rRNA (uraci 69.2 6.6 0.00014 38.1 4.4 19 51-69 293-311 (431)
198 COG1189 Predicted rRNA methyla 69.1 9 0.00019 35.0 4.9 49 34-100 65-113 (245)
199 PF07091 FmrO: Ribosomal RNA m 68.9 4.5 9.8E-05 37.0 2.9 51 33-99 89-139 (251)
200 PRK00536 speE spermidine synth 67.6 83 0.0018 28.9 11.0 36 48-100 70-105 (262)
201 PF07757 AdoMet_MTase: Predict 65.6 7 0.00015 31.5 3.1 17 50-66 58-74 (112)
202 PF09445 Methyltransf_15: RNA 64.1 4.4 9.5E-05 34.7 1.8 29 53-98 2-30 (163)
203 TIGR02143 trmA_only tRNA (urac 63.3 8.3 0.00018 36.7 3.7 18 52-69 199-216 (353)
204 COG2521 Predicted archaeal met 62.4 11 0.00024 34.7 4.0 81 133-250 188-270 (287)
205 PF01739 CheR: CheR methyltran 61.4 16 0.00035 32.0 4.9 46 49-100 30-75 (196)
206 PF02384 N6_Mtase: N-6 DNA Met 60.2 20 0.00044 32.8 5.6 40 50-97 46-85 (311)
207 TIGR01444 fkbM_fam methyltrans 60.2 4.9 0.00011 32.1 1.3 17 53-69 1-17 (143)
208 PRK00050 16S rRNA m(4)C1402 me 60.0 14 0.0003 34.6 4.5 32 191-222 209-240 (296)
209 COG0030 KsgA Dimethyladenosine 60.0 17 0.00037 33.4 5.0 52 51-106 31-94 (259)
210 PF06859 Bin3: Bicoid-interact 58.8 13 0.00029 29.8 3.6 30 193-222 19-48 (110)
211 PF03514 GRAS: GRAS domain fam 57.7 1.8E+02 0.0039 27.9 16.8 44 50-101 110-153 (374)
212 KOG0451 Predicted 2-oxoglutara 56.9 18 0.00038 37.2 4.8 97 146-257 352-473 (913)
213 PF00398 RrnaAD: Ribosomal RNA 53.7 42 0.00092 30.3 6.5 51 50-104 30-92 (262)
214 PHA03297 envelope glycoprotein 53.0 2.2 4.8E-05 36.2 -1.8 65 49-113 38-108 (185)
215 PLN02823 spermine synthase 52.6 74 0.0016 30.3 8.1 22 48-69 101-122 (336)
216 PF01596 Methyltransf_3: O-met 50.6 11 0.00025 33.1 2.2 34 50-97 45-78 (205)
217 TIGR02987 met_A_Alw26 type II 50.4 19 0.00042 35.9 4.0 44 50-100 31-74 (524)
218 KOG4589 Cell division protein 49.2 30 0.00065 30.9 4.5 35 50-98 69-103 (232)
219 KOG3115 Methyltransferase-like 48.0 10 0.00022 34.1 1.5 19 50-68 60-78 (249)
220 PRK11783 rlmL 23S rRNA m(2)G24 47.3 2.1E+02 0.0046 29.9 11.2 20 50-69 190-209 (702)
221 PF02268 TFIIA_gamma_N: Transc 46.3 24 0.00051 24.3 2.7 22 234-255 11-32 (49)
222 PF01189 Nol1_Nop2_Fmu: NOL1/N 45.6 22 0.00048 32.7 3.4 36 51-100 86-121 (283)
223 PF09597 IGR: IGR protein moti 41.7 28 0.00061 24.7 2.6 27 187-213 13-39 (57)
224 PF02475 Met_10: Met-10+ like- 40.3 27 0.00058 30.8 2.9 36 50-100 101-136 (200)
225 KOG3420 Predicted RNA methylas 39.6 16 0.00035 31.3 1.3 17 50-66 48-64 (185)
226 PRK11524 putative methyltransf 39.0 92 0.002 28.4 6.4 21 197-217 59-79 (284)
227 PF01170 UPF0020: Putative RNA 37.4 1.5E+02 0.0033 25.1 7.1 96 33-154 13-112 (179)
228 COG5124 Protein predicted to b 37.3 29 0.00063 30.4 2.5 28 234-261 41-68 (209)
229 smart00400 ZnF_CHCC zinc finge 37.2 29 0.00064 23.7 2.1 21 51-71 21-41 (55)
230 COG0031 CysK Cysteine synthase 35.9 1.2E+02 0.0027 28.5 6.7 117 52-220 170-292 (300)
231 PF03962 Mnd1: Mnd1 family; I 35.0 27 0.00059 30.4 2.1 26 236-261 30-55 (188)
232 KOG2920 Predicted methyltransf 34.9 34 0.00073 32.0 2.7 34 32-69 101-135 (282)
233 PF02527 GidB: rRNA small subu 34.5 48 0.001 28.7 3.5 71 53-154 51-121 (184)
234 PF09851 SHOCT: Short C-termin 34.1 25 0.00053 21.6 1.2 18 240-257 6-23 (31)
235 PF07101 DUF1363: Protein of u 33.3 17 0.00038 28.7 0.5 13 54-67 6-18 (124)
236 COG1889 NOP1 Fibrillarin-like 32.5 2.3E+02 0.005 25.6 7.4 54 193-261 162-215 (231)
237 KOG2352 Predicted spermine/spe 31.8 3E+02 0.0066 27.7 8.9 23 137-159 103-125 (482)
238 PRK10079 phosphonate metabolis 31.7 82 0.0018 27.8 4.7 51 191-255 15-69 (241)
239 PF03269 DUF268: Caenorhabditi 31.2 41 0.00088 29.2 2.4 25 196-221 90-114 (177)
240 cd08788 CARD_NOD2_2_CARD15 Cas 30.4 44 0.00094 25.5 2.2 34 234-267 12-45 (81)
241 KOG1501 Arginine N-methyltrans 29.9 43 0.00092 33.6 2.6 35 36-70 52-86 (636)
242 PRK13699 putative methylase; P 29.6 50 0.0011 29.4 2.9 12 143-154 15-26 (227)
243 PF02636 Methyltransf_28: Puta 29.1 68 0.0015 28.6 3.7 20 50-69 18-37 (252)
244 TIGR02404 trehalos_R_Bsub treh 28.9 93 0.002 27.2 4.5 56 192-260 4-64 (233)
245 COG0279 GmhA Phosphoheptose is 28.7 3E+02 0.0065 24.0 7.3 69 16-91 7-78 (176)
246 COG1942 Uncharacterized protei 28.6 1.7E+02 0.0037 21.4 5.0 46 57-102 6-52 (69)
247 COG0357 GidB Predicted S-adeno 27.0 1.4E+02 0.003 26.7 5.2 31 51-96 68-98 (215)
248 TIGR03357 VI_zyme type VI secr 27.0 3.3E+02 0.0071 21.8 7.8 27 33-59 27-53 (133)
249 TIGR02018 his_ut_repres histid 26.4 1.2E+02 0.0027 26.4 4.9 56 192-260 5-65 (230)
250 TIGR00308 TRM1 tRNA(guanine-26 26.3 83 0.0018 30.4 3.9 51 14-70 14-64 (374)
251 PF04816 DUF633: Family of unk 25.6 38 0.00082 29.9 1.4 34 54-102 1-34 (205)
252 PRK02289 4-oxalocrotonate taut 25.1 99 0.0021 21.3 3.2 40 62-102 11-51 (60)
253 KOG3463 Transcription initiati 24.6 62 0.0013 25.9 2.2 21 235-255 13-33 (109)
254 COG0293 FtsJ 23S rRNA methylas 24.2 1.5E+02 0.0033 26.3 4.9 22 48-69 43-64 (205)
255 KOG1661 Protein-L-isoaspartate 24.1 69 0.0015 29.0 2.7 22 48-69 80-101 (237)
256 KOG3790 Uncharacterized conser 23.5 70 0.0015 31.9 2.8 22 50-73 211-232 (529)
257 TIGR02325 C_P_lyase_phnF phosp 23.3 1.4E+02 0.0031 25.9 4.6 57 191-260 11-72 (238)
258 PRK14999 histidine utilization 22.7 1.5E+02 0.0032 26.1 4.6 57 191-260 15-76 (241)
259 TIGR03099 dCO2ase_PEP1 pyridox 22.5 3.4E+02 0.0075 25.7 7.4 48 8-64 191-238 (398)
260 PF10357 Kin17_mid: Domain of 22.4 93 0.002 25.7 3.0 74 182-257 10-83 (127)
261 PF13260 DUF4051: Protein of u 21.8 1.1E+02 0.0024 21.1 2.7 27 186-212 22-48 (54)
262 PF02167 Cytochrom_C1: Cytochr 21.7 1.1E+02 0.0024 27.5 3.5 48 135-202 133-180 (219)
263 COG1565 Uncharacterized conser 21.3 1.6E+02 0.0034 28.7 4.6 28 48-79 75-102 (370)
264 COG4076 Predicted RNA methylas 21.0 59 0.0013 29.1 1.6 63 34-102 22-94 (252)
265 PF14044 NETI: NETI protein 20.9 68 0.0015 22.8 1.6 17 236-252 8-24 (57)
266 TIGR00730 conserved hypothetic 20.9 95 0.0021 26.7 2.9 29 233-261 136-164 (178)
267 PF15579 Imm32: Immunity prote 20.7 4.3E+02 0.0094 20.9 6.7 36 211-251 67-102 (102)
268 COG0275 Predicted S-adenosylme 20.0 96 0.0021 29.4 2.9 35 188-222 214-248 (314)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=7e-83 Score=604.57 Aligned_cols=261 Identities=37% Similarity=0.622 Sum_probs=237.8
Q ss_pred CcccceeeccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCC-CceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 024331 1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSP-TKVAIADLGCSSGPNTLLVASELIKVVNKI 79 (269)
Q Consensus 1 ~~~~~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~ 79 (269)
|+++++|||+||+|++||++||.+|+.++..++|+|+++|++++....+ ++++|||||||+|+||+.++++||++|+++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999998654434 689999999999999999999999999999
Q ss_pred HHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHH--HHh----cCCCCCCCCceEEeecCCCccCCCCCCCceeeEe
Q 024331 80 CDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKIL--RKQ----LGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFH 153 (269)
Q Consensus 80 ~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~--~~~----~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~ 153 (269)
|.+.+..+|++||||||||+||||+||++|+.+.+.+ ..+ .+. ++||++|||||||+||||++|+||+|
T Consensus 93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-----~~~f~~gvpGSFY~RLfP~~Slh~~~ 167 (386)
T PLN02668 93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-----RSYFAAGVPGSFYRRLFPARSIDVFH 167 (386)
T ss_pred hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-----CceEEEecCccccccccCCCceEEEE
Confidence 9887778899999999999999999999999876532 111 111 35999999999999999999999999
Q ss_pred ccccccccccCCCCCCC------CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCC
Q 024331 154 SSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPS 227 (269)
Q Consensus 154 Ss~alHWLS~~P~~l~~------nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~ 227 (269)
|++|||||||+|+.+.+ |||+||+.+++ ++|.+||++||++||..||++||+||+|||+|+++++||++.++.
T Consensus 168 Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~ 246 (386)
T PLN02668 168 SAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPT 246 (386)
T ss_pred eeccceecccCchhhccCCcccccCCceEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcc
Confidence 99999999999999874 99999999887 789999999999999999999999999999999999999887777
Q ss_pred Chh-hhHHHHH-HHHHHHHHHHccCcccccccceeccccccc
Q 024331 228 SKE-CCYIWEL-LATALNNMVSEVTKSFLLLIVFNQLNYKLK 267 (269)
Q Consensus 228 ~~~-~~~~~~~-l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~ 267 (269)
.++ .+.+|+. ++++|+|||.||+|++|++|+||+|.|.+.
T Consensus 247 ~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps 288 (386)
T PLN02668 247 DQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPS 288 (386)
T ss_pred cCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCC
Confidence 655 5667887 999999999999999999999999999874
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=4.3e-74 Score=538.57 Aligned_cols=224 Identities=57% Similarity=0.923 Sum_probs=188.6
Q ss_pred HHHHHHhhcc-cCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcC-CCCCcceEEecCCCCCchHHHHHhhHHHH
Q 024331 36 TEEAMTKLFC-STSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLG-SQLPEFQVFLNDLPGNDFNTIFRSLASFQ 113 (269)
Q Consensus 36 l~~ai~~~~~-~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~-~~~p~~qv~~nDLP~NDFntLF~~l~~~~ 113 (269)
||+||.+++. ...+++++|||||||+|+||+.+++.||++|+++|++.+ +++|+|||||||||+||||+||++|+.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 5889999885 447789999999999999999999999999999998776 78899999999999999999999999998
Q ss_pred HHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC------CCcceEEcCCCCHHHHH
Q 024331 114 KILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLT 187 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~------nkg~i~~~~~s~~~v~~ 187 (269)
+++.+. ++||++|||||||+||||++||||+||++||||||++|+.+.+ |||+||+.++++++|.+
T Consensus 81 ~~~~~~--------~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ 152 (334)
T PF03492_consen 81 QSLKKF--------RNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAK 152 (334)
T ss_dssp HHHHHT--------TSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHH
T ss_pred hccCCC--------ceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHH
Confidence 777651 5899999999999999999999999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccccccc
Q 024331 188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLK 267 (269)
Q Consensus 188 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~ 267 (269)
||++||++||.+||++||+||||||+|+++++|+++.++...+.+.+|++++++|+|||.||+|++|++|+||+|.|.+.
T Consensus 153 ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps 232 (334)
T PF03492_consen 153 AYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPS 232 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---
T ss_pred HHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCC
Confidence 99999999999999999999999999999999999877766556789999999999999999999999999999999875
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.22 E-value=5.2e-11 Score=104.06 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=93.9
Q ss_pred CchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331 15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL 94 (269)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~ 94 (269)
..+|++.+..|+.....+++.+... ....+.+|+|+|||+|..+..+. +.. |..+++.
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~-------~~~~~~~vLDlG~G~G~~~~~l~--------~~~-------~~~~~~~ 63 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEK-------GIFIPASVLDIGCGTGYLTRALL--------KRF-------PQAEFIA 63 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhh-------ccCCCCeEEEECCCccHHHHHHH--------HhC-------CCCcEEE
Confidence 4679999999998888887777651 12345899999999999877666 432 4577899
Q ss_pred cCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc
Q 024331 95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN 174 (269)
Q Consensus 95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~ 174 (269)
.|...... ...+..... +-.++. +++...++|++++|+++++.++||+..
T Consensus 64 ~D~~~~~~-----------~~~~~~~~~-----~~~~~~---~d~~~~~~~~~~fD~vi~~~~l~~~~~----------- 113 (240)
T TIGR02072 64 LDISAGML-----------AQAKTKLSE-----NVQFIC---GDAEKLPLEDSSFDLIVSNLALQWCDD----------- 113 (240)
T ss_pred EeChHHHH-----------HHHHHhcCC-----CCeEEe---cchhhCCCCCCceeEEEEhhhhhhccC-----------
Confidence 99755411 112211111 113433 788888999999999999999999532
Q ss_pred eEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 175 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
...+|+.-.+-|+|||.++++.++..
T Consensus 114 ----------------------~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 114 ----------------------LSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred ----------------------HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 22355555778889999999887654
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.20 E-value=5.8e-11 Score=106.38 Aligned_cols=127 Identities=16% Similarity=0.191 Sum_probs=86.7
Q ss_pred chHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEec
Q 024331 16 TSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLN 95 (269)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~n 95 (269)
.+|++++.+|+.+...+...+.. ...-+|+|+|||+|..+..+. ++ ..+|+..
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~~ 70 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRYWR--------ER---------GSQVTAL 70 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHHHH--------Hc---------CCeEEEE
Confidence 57999999998888777655432 135689999999998766543 22 2689999
Q ss_pred CCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcce
Q 024331 96 DLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNI 175 (269)
Q Consensus 96 DLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i 175 (269)
|+... +. +..+++. . ...|+. +++...++|++++|+++|+.++||+.+.+
T Consensus 71 D~s~~----------~l-~~a~~~~-~-----~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d~~---------- 120 (251)
T PRK10258 71 DLSPP----------ML-AQARQKD-A-----ADHYLA---GDIESLPLATATFDLAWSNLAVQWCGNLS---------- 120 (251)
T ss_pred ECCHH----------HH-HHHHhhC-C-----CCCEEE---cCcccCcCCCCcEEEEEECchhhhcCCHH----------
Confidence 98654 22 1122211 1 123444 78888889999999999999999954321
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 176 FMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 176 ~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
.+|+.=.+-|+|||.++++.++..
T Consensus 121 -----------------------~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 121 -----------------------TALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred -----------------------HHHHHHHHHcCCCeEEEEEeCCCC
Confidence 122222567779999999998764
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=1.9e-10 Score=103.74 Aligned_cols=112 Identities=20% Similarity=0.260 Sum_probs=83.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
++.+|+|+|||||--++.++ +.. ++.+|+..|...+ |+..-..+....++ ..=
T Consensus 51 ~g~~vLDva~GTGd~a~~~~--------k~~-------g~g~v~~~D~s~~----------ML~~a~~k~~~~~~--~~i 103 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA--------KSV-------GTGEVVGLDISES----------MLEVAREKLKKKGV--QNV 103 (238)
T ss_pred CCCEEEEecCCccHHHHHHH--------Hhc-------CCceEEEEECCHH----------HHHHHHHHhhccCc--cce
Confidence 57999999999999998887 553 2689999999888 65332222111111 011
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
.|+. |++.+.+||++|+|++.+++.||++.+.+.. .++. +|.||
T Consensus 104 ~fv~---~dAe~LPf~D~sFD~vt~~fglrnv~d~~~a------------------L~E~---------------~RVlK 147 (238)
T COG2226 104 EFVV---GDAENLPFPDNSFDAVTISFGLRNVTDIDKA------------------LKEM---------------YRVLK 147 (238)
T ss_pred EEEE---echhhCCCCCCccCEEEeeehhhcCCCHHHH------------------HHHH---------------HHhhc
Confidence 3444 9999999999999999999999998765543 3344 67888
Q ss_pred cCCeEEEEecccCCC
Q 024331 210 AEGRMVLTFLGRKSQ 224 (269)
Q Consensus 210 pGG~lv~~~~g~~~~ 224 (269)
|||++++.-++..+.
T Consensus 148 pgG~~~vle~~~p~~ 162 (238)
T COG2226 148 PGGRLLVLEFSKPDN 162 (238)
T ss_pred CCeEEEEEEcCCCCc
Confidence 999999999888754
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.04 E-value=6e-10 Score=100.32 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=81.8
Q ss_pred CchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331 15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL 94 (269)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~ 94 (269)
...|.+++..|.+.+..++..+. ...+.+|+|+|||+|..+..+. +++ |..+|+.
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~--------~~~-------p~~~v~g 58 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLA--------RRW-------PGAVIEA 58 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHH--------HHC-------CCCEEEE
Confidence 35799999999776654433322 2245899999999998776555 442 5678999
Q ss_pred cCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc
Q 024331 95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN 174 (269)
Q Consensus 95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~ 174 (269)
.|+..+ +.. ..+++ .--|+. +++.. +.|++++|+++|+.++||+.+.+
T Consensus 59 vD~s~~----------~~~-~a~~~--------~~~~~~---~d~~~-~~~~~~fD~v~~~~~l~~~~d~~--------- 106 (255)
T PRK14103 59 LDSSPE----------MVA-AARER--------GVDART---GDVRD-WKPKPDTDVVVSNAALQWVPEHA--------- 106 (255)
T ss_pred EECCHH----------HHH-HHHhc--------CCcEEE---cChhh-CCCCCCceEEEEehhhhhCCCHH---------
Confidence 998654 221 12211 112333 66654 45788999999999999974311
Q ss_pred eEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331 175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR 221 (269)
Q Consensus 175 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~ 221 (269)
.+.+.. .+.|+|||.+++.+.+.
T Consensus 107 ---------~~l~~~---------------~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 107 ---------DLLVRW---------------VDELAPGSWIAVQVPGN 129 (255)
T ss_pred ---------HHHHHH---------------HHhCCCCcEEEEEcCCC
Confidence 111111 45677999999987653
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.91 E-value=1.4e-08 Score=92.32 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=73.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC---CCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG---SASGA 126 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~---~~~~~ 126 (269)
+..+|+|+|||+|..+..+. +++ .|..+|+..|+..+ ++.. .+++.. ...
T Consensus 73 ~~~~VLDlGcGtG~~~~~la--------~~~------~~~~~V~gvD~S~~----------ml~~-A~~r~~~~~~~~-- 125 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLS--------EKV------GSDGKVMGLDFSSE----------QLAV-AASRQELKAKSC-- 125 (261)
T ss_pred CCCEEEEECCcCCHHHHHHH--------HHh------CCCCEEEEEECCHH----------HHHH-HHHHhhhhhhcc--
Confidence 45799999999999776555 442 24578999998877 3321 221110 000
Q ss_pred CCc-eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 127 AGQ-CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 127 ~~~-~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
..+ .|+. ++....+||++|+|++++++++||+.+. ..+.++. .
T Consensus 126 ~~~i~~~~---~d~~~lp~~~~sfD~V~~~~~l~~~~d~------------------~~~l~ei---------------~ 169 (261)
T PLN02233 126 YKNIEWIE---GDATDLPFDDCYFDAITMGYGLRNVVDR------------------LKAMQEM---------------Y 169 (261)
T ss_pred CCCeEEEE---cccccCCCCCCCEeEEEEecccccCCCH------------------HHHHHHH---------------H
Confidence 012 2433 7888889999999999999999996431 1122222 5
Q ss_pred hhhccCCeEEEEecccCC
Q 024331 206 EELVAEGRMVLTFLGRKS 223 (269)
Q Consensus 206 ~EL~pGG~lv~~~~g~~~ 223 (269)
|.|||||+++++.+...+
T Consensus 170 rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 170 RVLKPGSRVSILDFNKST 187 (261)
T ss_pred HHcCcCcEEEEEECCCCC
Confidence 678899999999887654
No 8
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.90 E-value=4.2e-09 Score=94.60 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=80.7
Q ss_pred CchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331 15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL 94 (269)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~ 94 (269)
+..|.+++..|.+.....+..+. ..+..+|+|+|||+|..+..++ +++ |..+|+.
T Consensus 6 ~~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la--------~~~-------~~~~v~g 60 (258)
T PRK01683 6 PSLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLV--------ERW-------PAARITG 60 (258)
T ss_pred HHHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHH--------HHC-------CCCEEEE
Confidence 35799988888665544432221 2345799999999999987766 443 4578999
Q ss_pred cCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc
Q 024331 95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN 174 (269)
Q Consensus 95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~ 174 (269)
.|+... +. +..+++. . .--|+. +++.. +.|++++|+++|+.++||+.+.
T Consensus 61 vD~s~~----------~i-~~a~~~~-~-----~~~~~~---~d~~~-~~~~~~fD~v~~~~~l~~~~d~---------- 109 (258)
T PRK01683 61 IDSSPA----------ML-AEARSRL-P-----DCQFVE---ADIAS-WQPPQALDLIFANASLQWLPDH---------- 109 (258)
T ss_pred EECCHH----------HH-HHHHHhC-C-----CCeEEE---Cchhc-cCCCCCccEEEEccChhhCCCH----------
Confidence 997764 21 1122211 1 112333 56543 3577899999999999996321
Q ss_pred eEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecc
Q 024331 175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG 220 (269)
Q Consensus 175 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g 220 (269)
..+|+.=.+.|+|||.+++++.+
T Consensus 110 -----------------------~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 110 -----------------------LELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred -----------------------HHHHHHHHHhcCCCcEEEEECCC
Confidence 11222235578899999998643
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.88 E-value=3.3e-09 Score=79.24 Aligned_cols=73 Identities=29% Similarity=0.364 Sum_probs=49.1
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEee
Q 024331 55 ADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTG 134 (269)
Q Consensus 55 aD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 134 (269)
+|+|||+|..+..+. ++ +..+|+..|.... +. +..++..... ..-+..
T Consensus 1 LdiG~G~G~~~~~l~--------~~--------~~~~v~~~D~~~~----------~~-~~~~~~~~~~----~~~~~~- 48 (95)
T PF08241_consen 1 LDIGCGTGRFAAALA--------KR--------GGASVTGIDISEE----------ML-EQARKRLKNE----GVSFRQ- 48 (95)
T ss_dssp EEET-TTSHHHHHHH--------HT--------TTCEEEEEES-HH----------HH-HHHHHHTTTS----TEEEEE-
T ss_pred CEecCcCCHHHHHHH--------hc--------cCCEEEEEeCCHH----------HH-HHHHhccccc----Cchhee-
Confidence 799999999988777 43 3588899887665 22 2233322110 112444
Q ss_pred cCCCccCCCCCCCceeeEecccccccc
Q 024331 135 VPGSFYGRLFPRNSVHLFHSSYSLQWL 161 (269)
Q Consensus 135 vpgSFy~~lfP~~Svd~~~Ss~alHWL 161 (269)
++++..+||++|+|++++..++||+
T Consensus 49 --~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 49 --GDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp --SBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred --ehHHhCccccccccccccccceeec
Confidence 8899999999999999999999997
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.83 E-value=4.5e-09 Score=94.43 Aligned_cols=111 Identities=22% Similarity=0.252 Sum_probs=64.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
++.+|+|+|||||-.|..++ ++. .|..+|+..|+..+ |+.. .+++. ..+. .
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~--------~~~------~~~~~v~~vD~s~~----------ML~~-a~~k~~~~~~---~ 98 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELA--------RRV------GPNGKVVGVDISPG----------MLEV-ARKKLKREGL---Q 98 (233)
T ss_dssp S--EEEEET-TTSHHHHHHG--------GGS------S---EEEEEES-HH----------HHHH-HHHHHHHTT-----
T ss_pred CCCEEEEeCCChHHHHHHHH--------HHC------CCccEEEEecCCHH----------HHHH-HHHHHHhhCC---C
Confidence 46799999999998887666 432 25679999998877 5432 22111 1111 1
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
+ +.-+-|+....+||++|+|.+++++.+|-+.+. +.+.++. .|.|
T Consensus 99 ~--i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~------------------~~~l~E~---------------~RVL 143 (233)
T PF01209_consen 99 N--IEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDR------------------ERALREM---------------YRVL 143 (233)
T ss_dssp S--EEEEE-BTTB--S-TT-EEEEEEES-GGG-SSH------------------HHHHHHH---------------HHHE
T ss_pred C--eeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCH------------------HHHHHHH---------------HHHc
Confidence 2 223348999999999999999999999986431 1222233 5778
Q ss_pred ccCCeEEEEecccCC
Q 024331 209 VAEGRMVLTFLGRKS 223 (269)
Q Consensus 209 ~pGG~lv~~~~g~~~ 223 (269)
||||++++.-++++.
T Consensus 144 kPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 144 KPGGRLVILEFSKPR 158 (233)
T ss_dssp EEEEEEEEEEEEB-S
T ss_pred CCCeEEEEeeccCCC
Confidence 899999999888864
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.76 E-value=1.8e-07 Score=85.13 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=71.7
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..+..++ +.+ ..+|+..|+..+ +. +..+++.... .+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~----------~~-~~a~~~~~~~----~~ 100 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEK----------MV-NIAKLRNSDK----NK 100 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHH----------HH-HHHHHHcCcC----Cc
Confidence 45799999999999877665 321 368999998765 21 1122221110 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+..+.+++....||++++|+++|..++++++. .|...+|+.=++-|+
T Consensus 101 --i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~-------------------------------~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 101 --IEFEANDILKKDFPENTFDMIYSRDAILHLSY-------------------------------ADKKKLFEKCYKWLK 147 (263)
T ss_pred --eEEEECCcccCCCCCCCeEEEEEhhhHHhCCH-------------------------------HHHHHHHHHHHHHcC
Confidence 22234788888999999999999887765321 133334444467788
Q ss_pred cCCeEEEEecccCC
Q 024331 210 AEGRMVLTFLGRKS 223 (269)
Q Consensus 210 pGG~lv~~~~g~~~ 223 (269)
|||+++++-.....
T Consensus 148 PGG~lvi~d~~~~~ 161 (263)
T PTZ00098 148 PNGILLITDYCADK 161 (263)
T ss_pred CCcEEEEEEecccc
Confidence 99999998775543
No 12
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.75 E-value=1.1e-07 Score=84.64 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=71.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..+..++ +++ ..|..+++..|+..+ . +....+.+.. .+.. .+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~--------~~~-----~~p~~~v~gvD~s~~-m------l~~a~~~~~~-~~~~----~~ 107 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSAR--------RNI-----NQPNVKIIGIDNSQP-M------VERCRQHIAA-YHSE----IP 107 (239)
T ss_pred CCCEEEEecCCCCHHHHHHH--------Hhc-----CCCCCeEEEEeCCHH-H------HHHHHHHHHh-cCCC----CC
Confidence 45689999999999888776 432 236789999998664 1 1111111111 1111 12
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+.-+.+++....+|+ .|++++++++||++. .|...+|+.=.+.|+
T Consensus 108 --v~~~~~d~~~~~~~~--~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~~Lk 152 (239)
T TIGR00740 108 --VEILCNDIRHVEIKN--ASMVILNFTLQFLPP-------------------------------EDRIALLTKIYEGLN 152 (239)
T ss_pred --eEEEECChhhCCCCC--CCEEeeecchhhCCH-------------------------------HHHHHHHHHHHHhcC
Confidence 222448888776664 789999999999632 122344455567788
Q ss_pred cCCeEEEEecccC
Q 024331 210 AEGRMVLTFLGRK 222 (269)
Q Consensus 210 pGG~lv~~~~g~~ 222 (269)
|||+++++...+.
T Consensus 153 pgG~l~i~d~~~~ 165 (239)
T TIGR00740 153 PNGVLVLSEKFRF 165 (239)
T ss_pred CCeEEEEeecccC
Confidence 9999999876554
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=98.68 E-value=2.5e-07 Score=87.30 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=69.8
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..+..++ +++ ..+|+..|+..+ .-.......++.+..- .-
T Consensus 118 ~~~~VLDiGCG~G~~~~~La--------~~~--------g~~v~gvD~s~~--------~i~~a~~~~~~~g~~~---~v 170 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLA--------RKY--------GANVKGITLSPV--------QAARANALAAAQGLSD---KV 170 (340)
T ss_pred CCCeEEEecCCCCHHHHHHH--------Hhc--------CCEEEEEECCHH--------HHHHHHHHHHhcCCCC---ce
Confidence 46799999999999988777 442 267888887654 1011111111112110 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
.|+. +++....||++++|+++|..++|++.+. . .+|+.=.+.|+
T Consensus 171 ~~~~---~D~~~~~~~~~~FD~V~s~~~~~h~~d~------------------~---------------~~l~e~~rvLk 214 (340)
T PLN02244 171 SFQV---ADALNQPFEDGQFDLVWSMESGEHMPDK------------------R---------------KFVQELARVAA 214 (340)
T ss_pred EEEE---cCcccCCCCCCCccEEEECCchhccCCH------------------H---------------HHHHHHHHHcC
Confidence 3433 7888889999999999999998875321 1 11111156677
Q ss_pred cCCeEEEEecccC
Q 024331 210 AEGRMVLTFLGRK 222 (269)
Q Consensus 210 pGG~lv~~~~g~~ 222 (269)
|||+++++.....
T Consensus 215 pGG~lvi~~~~~~ 227 (340)
T PLN02244 215 PGGRIIIVTWCHR 227 (340)
T ss_pred CCcEEEEEEeccc
Confidence 9999999876543
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.66 E-value=2.6e-07 Score=83.17 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=53.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
+..+|+|+|||+|.+++.+. +.. ..|..+|+..|+... +. +..+++. ..+. ..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~--------~~~-----~~~~~~v~gvD~S~~----------ml-~~A~~~~~~~~~--~~ 109 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVR--------RNI-----HHDNCKIIAIDNSPA----------MI-ERCRRHIDAYKA--PT 109 (247)
T ss_pred CCCEEEEEcccCCHHHHHHH--------Hhc-----CCCCCeEEEEeCCHH----------HH-HHHHHHHHhcCC--CC
Confidence 45799999999999887766 421 236789999998665 32 1122221 1111 01
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccc
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS 162 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS 162 (269)
+ +..+.+++...+++ ..|++++++++|+++
T Consensus 110 ~--v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~ 139 (247)
T PRK15451 110 P--VDVIEGDIRDIAIE--NASMVVLNFTLQFLE 139 (247)
T ss_pred C--eEEEeCChhhCCCC--CCCEEehhhHHHhCC
Confidence 2 22244777776555 479999999999975
No 15
>PRK06922 hypothetical protein; Provisional
Probab=98.59 E-value=1.5e-07 Score=95.36 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=76.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
+..+|+|+|||+|..+..++ +++ |..+|+..|++.+ +.. .++++. ..+. +
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA--------~~~-------P~~kVtGIDIS~~----------MLe-~Ararl~~~g~---~ 468 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIE--------EET-------EDKRIYGIDISEN----------VID-TLKKKKQNEGR---S 468 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HhC-------CCCEEEEEECCHH----------HHH-HHHHHhhhcCC---C
Confidence 35799999999998766555 433 6789999999886 322 122221 1111 1
Q ss_pred ceEEeecCCCccCCC--CCCCceeeEecccccccc-ccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 129 QCFFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWL-SQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 129 ~~f~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWL-S~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
-.++. ++..... ||++|+|++++++++||+ +.+|..- . +| ..++...+|+.=.
T Consensus 469 ie~I~---gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g-----~-------------~f---~~edl~kiLreI~ 524 (677)
T PRK06922 469 WNVIK---GDAINLSSSFEKESVDTIVYSSILHELFSYIEYEG-----K-------------KF---NHEVIKKGLQSAY 524 (677)
T ss_pred eEEEE---cchHhCccccCCCCEEEEEEchHHHhhhhhccccc-----c-------------cc---cHHHHHHHHHHHH
Confidence 12333 5665544 899999999999999964 5555311 0 11 1246667777777
Q ss_pred hhhccCCeEEEEe
Q 024331 206 EELVAEGRMVLTF 218 (269)
Q Consensus 206 ~EL~pGG~lv~~~ 218 (269)
+.|||||++++.-
T Consensus 525 RVLKPGGrLII~D 537 (677)
T PRK06922 525 EVLKPGGRIIIRD 537 (677)
T ss_pred HHcCCCcEEEEEe
Confidence 8889999999974
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.57 E-value=1.9e-07 Score=81.25 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=62.5
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
.+.+|+|+|||+|.+++.++ ++ ..+|+..|+..+ . +........ +.+ . +
T Consensus 30 ~~~~vLDiGcG~G~~a~~la--------~~---------g~~V~~iD~s~~-~------l~~a~~~~~-~~~--~----~ 78 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLS--------LA---------GYDVRAWDHNPA-S------IASVLDMKA-REN--L----P 78 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHH--------HC---------CCeEEEEECCHH-H------HHHHHHHHH-HhC--C----C
Confidence 35799999999999999887 32 268999998654 1 111111111 111 1 1
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+.....++....++ +++|+++|+.++|+++. .++..+++.-++-|+
T Consensus 79 --v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~Lk 124 (195)
T TIGR00477 79 --LRTDAYDINAAALN-EDYDFIFSTVVFMFLQA-------------------------------GRVPEIIANMQAHTR 124 (195)
T ss_pred --ceeEeccchhcccc-CCCCEEEEecccccCCH-------------------------------HHHHHHHHHHHHHhC
Confidence 11222343333344 68999999999998632 233344555566677
Q ss_pred cCCeEEEEe
Q 024331 210 AEGRMVLTF 218 (269)
Q Consensus 210 pGG~lv~~~ 218 (269)
|||++++..
T Consensus 125 pgG~lli~~ 133 (195)
T TIGR00477 125 PGGYNLIVA 133 (195)
T ss_pred CCcEEEEEE
Confidence 999965543
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.57 E-value=2.3e-07 Score=81.78 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=70.8
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
...+|+|+|||+|..+..+. +.+ .|..+|+..|+..+ +. +..+.+. ..+. .
T Consensus 45 ~~~~vLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~----------~~-~~a~~~~~~~~~---~ 96 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALA--------EAV------GPEGHVIGLDFSEN----------ML-SVGRQKVKDAGL---H 96 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHH--------HHh------CCCCEEEEEECCHH----------HH-HHHHHHHHhcCC---C
Confidence 35799999999999887666 442 24578999998664 11 1111111 1111 1
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
+ +.-+.+++....+|++++|++++.+++||++.. ..+|+.=.+-|
T Consensus 97 ~--v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------~~~l~~~~~~L 141 (231)
T TIGR02752 97 N--VELVHGNAMELPFDDNSFDYVTIGFGLRNVPDY---------------------------------MQVLREMYRVV 141 (231)
T ss_pred c--eEEEEechhcCCCCCCCccEEEEecccccCCCH---------------------------------HHHHHHHHHHc
Confidence 2 222447777778899999999999999986421 12233335667
Q ss_pred ccCCeEEEEecccC
Q 024331 209 VAEGRMVLTFLGRK 222 (269)
Q Consensus 209 ~pGG~lv~~~~g~~ 222 (269)
+|||++++...+..
T Consensus 142 k~gG~l~~~~~~~~ 155 (231)
T TIGR02752 142 KPGGKVVCLETSQP 155 (231)
T ss_pred CcCeEEEEEECCCC
Confidence 79999998766543
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.57 E-value=2e-07 Score=84.05 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=52.4
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAA 127 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~ 127 (269)
+.+.+|+|+|||+|..+..++ ++ ..+|+..|+... +. +.++++. ..+. .
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la--------~~---------g~~v~~vD~s~~----------~l-~~a~~~~~~~g~--~ 92 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLA--------EL---------GHQVILCDLSAE----------MI-QRAKQAAEAKGV--S 92 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHH--------Hc---------CCEEEEEECCHH----------HH-HHHHHHHHhcCC--c
Confidence 346899999999999888776 32 267889997665 21 1122111 0111 0
Q ss_pred Cc-eEEeecCCCccCC-CCCCCceeeEecccccccccc
Q 024331 128 GQ-CFFTGVPGSFYGR-LFPRNSVHLFHSSYSLQWLSQ 163 (269)
Q Consensus 128 ~~-~f~~~vpgSFy~~-lfP~~Svd~~~Ss~alHWLS~ 163 (269)
.+ .++. +++... .++++++|++++..++||+.+
T Consensus 93 ~~v~~~~---~d~~~l~~~~~~~fD~V~~~~vl~~~~~ 127 (255)
T PRK11036 93 DNMQFIH---CAAQDIAQHLETPVDLILFHAVLEWVAD 127 (255)
T ss_pred cceEEEE---cCHHHHhhhcCCCCCEEEehhHHHhhCC
Confidence 12 2333 666554 367899999999999999743
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.55 E-value=1.1e-06 Score=86.05 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=70.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
+..+|+|+|||+|..++.+. +.. ..+|+..|+... ++. ..+++. +... .
T Consensus 266 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvDiS~~----------~l~-~A~~~~~~~~~---~ 315 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA--------ENF--------DVHVVGIDLSVN----------MIS-FALERAIGRKC---S 315 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH--------Hhc--------CCEEEEEECCHH----------HHH-HHHHHhhcCCC---c
Confidence 45799999999998776555 331 368999998754 221 111111 1110 1
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
-.|.. +++....+|++++|+++|..+++|+.+ ++.+. +.+ ++-|
T Consensus 316 v~~~~---~d~~~~~~~~~~fD~I~s~~~l~h~~d------------------~~~~l--------~~~-------~r~L 359 (475)
T PLN02336 316 VEFEV---ADCTKKTYPDNSFDVIYSRDTILHIQD------------------KPALF--------RSF-------FKWL 359 (475)
T ss_pred eEEEE---cCcccCCCCCCCEEEEEECCcccccCC------------------HHHHH--------HHH-------HHHc
Confidence 12333 788888999999999999999998633 11111 222 5567
Q ss_pred ccCCeEEEEecccCC
Q 024331 209 VAEGRMVLTFLGRKS 223 (269)
Q Consensus 209 ~pGG~lv~~~~g~~~ 223 (269)
+|||+++++.+.+..
T Consensus 360 kpgG~l~i~~~~~~~ 374 (475)
T PLN02336 360 KPGGKVLISDYCRSP 374 (475)
T ss_pred CCCeEEEEEEeccCC
Confidence 799999999887654
No 20
>PRK08317 hypothetical protein; Provisional
Probab=98.48 E-value=3.8e-06 Score=73.04 Aligned_cols=108 Identities=23% Similarity=0.248 Sum_probs=69.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHh-cCCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ-LGSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~-~~~~~~~~~ 128 (269)
...+|+|+|||+|..+..++ +++ .|..+++..|+..+ .. +..+++ ..... .
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a--------~~~------~~~~~v~~~d~~~~----------~~-~~a~~~~~~~~~---~ 70 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA--------RRV------GPEGRVVGIDRSEA----------ML-ALAKERAAGLGP---N 70 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------Hhc------CCCcEEEEEeCCHH----------HH-HHHHHHhhCCCC---c
Confidence 45799999999998877666 432 14578999998654 11 112221 11110 1
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
-.|+. +++....++++++|++++..++||+.+ +..+|+.-.+-|
T Consensus 71 ~~~~~---~d~~~~~~~~~~~D~v~~~~~~~~~~~---------------------------------~~~~l~~~~~~L 114 (241)
T PRK08317 71 VEFVR---GDADGLPFPDGSFDAVRSDRVLQHLED---------------------------------PARALAEIARVL 114 (241)
T ss_pred eEEEe---cccccCCCCCCCceEEEEechhhccCC---------------------------------HHHHHHHHHHHh
Confidence 22333 677777889999999999999988643 112233335567
Q ss_pred ccCCeEEEEeccc
Q 024331 209 VAEGRMVLTFLGR 221 (269)
Q Consensus 209 ~pGG~lv~~~~g~ 221 (269)
+|||.+++.....
T Consensus 115 ~~gG~l~~~~~~~ 127 (241)
T PRK08317 115 RPGGRVVVLDTDW 127 (241)
T ss_pred cCCcEEEEEecCC
Confidence 7999999987654
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.48 E-value=5.8e-07 Score=78.29 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=50.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
+.+|+|+|||+|.+++.++ ++ ..+|+..|+..+ . +..... .....+ + .+
T Consensus 31 ~~~vLDiGcG~G~~a~~La--------~~---------g~~V~gvD~S~~-~------i~~a~~-~~~~~~--~---~~- 79 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA--------AN---------GFDVTAWDKNPM-S------IANLER-IKAAEN--L---DN- 79 (197)
T ss_pred CCcEEEECCCCCHHHHHHH--------HC---------CCEEEEEeCCHH-H------HHHHHH-HHHHcC--C---Cc-
Confidence 4799999999999998877 32 268889998654 1 111111 111111 1 11
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS 162 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS 162 (269)
+..+.+++....++ +++|+++|+.++||++
T Consensus 80 -v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 109 (197)
T PRK11207 80 -LHTAVVDLNNLTFD-GEYDFILSTVVLMFLE 109 (197)
T ss_pred -ceEEecChhhCCcC-CCcCEEEEecchhhCC
Confidence 22333566655554 6799999999999964
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.46 E-value=9.6e-07 Score=86.35 Aligned_cols=103 Identities=19% Similarity=0.154 Sum_probs=67.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc-
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ- 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~- 129 (269)
..+|+|+|||+|..+..+. +++ .+|+..|.... +.. ......+. . .+
T Consensus 38 ~~~vLDlGcG~G~~~~~la--------~~~---------~~v~giD~s~~----------~l~-~a~~~~~~-~---~~i 85 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELA--------KKA---------GQVIALDFIES----------VIK-KNESINGH-Y---KNV 85 (475)
T ss_pred CCEEEEeCCCcCHHHHHHH--------hhC---------CEEEEEeCCHH----------HHH-HHHHHhcc-C---Cce
Confidence 4589999999999998877 332 36788885443 221 11111111 1 12
Q ss_pred eEEeecCCCcc--CCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 130 CFFTGVPGSFY--GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 130 ~f~~~vpgSFy--~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
.++. +++. ...+|++++|++++..++||++. .++..+|+.-.+-
T Consensus 86 ~~~~---~d~~~~~~~~~~~~fD~I~~~~~l~~l~~-------------------------------~~~~~~l~~~~r~ 131 (475)
T PLN02336 86 KFMC---ADVTSPDLNISDGSVDLIFSNWLLMYLSD-------------------------------KEVENLAERMVKW 131 (475)
T ss_pred EEEE---ecccccccCCCCCCEEEEehhhhHHhCCH-------------------------------HHHHHHHHHHHHh
Confidence 2433 5554 35689999999999999999743 2334555555777
Q ss_pred hccCCeEEEEec
Q 024331 208 LVAEGRMVLTFL 219 (269)
Q Consensus 208 L~pGG~lv~~~~ 219 (269)
|+|||++++.-.
T Consensus 132 Lk~gG~l~~~d~ 143 (475)
T PLN02336 132 LKVGGYIFFRES 143 (475)
T ss_pred cCCCeEEEEEec
Confidence 889999998744
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.46 E-value=5.7e-07 Score=84.61 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=69.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~ 128 (269)
+..+|+|+|||+|..+..+. + +..+|+..|.... +. +..+.+.. ... ...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La--------~---------~g~~V~GID~s~~----------~i-~~Ar~~~~~~~~-~~~ 181 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA--------R---------MGATVTGVDAVDK----------NV-KIARLHADMDPV-TST 181 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH--------H---------cCCEEEEEeCCHH----------HH-HHHHHHHHhcCc-ccc
Confidence 34699999999999876554 2 2368999997754 11 11221111 000 001
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
-.|+. +++....++++++|++++...||++.+. ..||+.=++-|
T Consensus 182 i~~~~---~dae~l~~~~~~FD~Vi~~~vLeHv~d~---------------------------------~~~L~~l~r~L 225 (322)
T PLN02396 182 IEYLC---TTAEKLADEGRKFDAVLSLEVIEHVANP---------------------------------AEFCKSLSALT 225 (322)
T ss_pred eeEEe---cCHHHhhhccCCCCEEEEhhHHHhcCCH---------------------------------HHHHHHHHHHc
Confidence 12333 7888878889999999999999986431 12333335667
Q ss_pred ccCCeEEEEecccC
Q 024331 209 VAEGRMVLTFLGRK 222 (269)
Q Consensus 209 ~pGG~lv~~~~g~~ 222 (269)
||||+++++++.+.
T Consensus 226 kPGG~liist~nr~ 239 (322)
T PLN02396 226 IPNGATVLSTINRT 239 (322)
T ss_pred CCCcEEEEEECCcC
Confidence 79999999987653
No 24
>PRK05785 hypothetical protein; Provisional
Probab=98.46 E-value=1.1e-06 Score=78.30 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=54.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
+.+|+|+|||||..+..+. +++ ..+|+..|+..+ ++.. .+.+ .-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~--------~~~--------~~~v~gvD~S~~----------Ml~~-a~~~---------~~ 95 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFK--------KVF--------KYYVVALDYAEN----------MLKM-NLVA---------DD 95 (226)
T ss_pred CCeEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEECCCHH----------HHHH-HHhc---------cc
Confidence 5799999999998877665 431 258999998766 4322 1211 12
Q ss_pred EEeecCCCccCCCCCCCceeeEecccccccccc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ 163 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~ 163 (269)
++ -+++...+||++|+|+++|+++|||..+
T Consensus 96 ~~---~~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 96 KV---VGSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred eE---EechhhCCCCCCCEEEEEecChhhccCC
Confidence 33 3788999999999999999999999654
No 25
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.45 E-value=1.2e-06 Score=79.81 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=48.5
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..+..+. +... .....+|+..|+..+ +.. ...++. . .-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~--------~~~~----~~~~~~v~giD~s~~----------~l~-~A~~~~-~-----~~ 135 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALA--------DALP----EITTMQLFGLDISKV----------AIK-YAAKRY-P-----QV 135 (272)
T ss_pred CCCeEEEECCcCCHHHHHHH--------Hhcc----cccCCeEEEECCCHH----------HHH-HHHHhC-C-----CC
Confidence 34789999999999887776 3321 111258999998765 322 122211 1 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSY 156 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~ 156 (269)
.|+. ++....+|+++|+|+++|.+
T Consensus 136 ~~~~---~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 136 TFCV---ASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred eEEE---eecccCCCcCCceeEEEEec
Confidence 3433 67778889999999999854
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.44 E-value=2.4e-06 Score=66.40 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=66.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
.-+|+|+|||+|..++.++ ++. |..+|+..|.... + +....+.... .+... +-.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~--------~~~-------~~~~v~gvD~s~~-~------~~~a~~~~~~-~~~~~---~i~ 55 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALA--------RLF-------PGARVVGVDISPE-M------LEIARERAAE-EGLSD---RIT 55 (112)
T ss_dssp TCEEEEETTTTSHHHHHHH--------HHH-------TTSEEEEEESSHH-H------HHHHHHHHHH-TTTTT---TEE
T ss_pred CCEEEEEcCcCCHHHHHHH--------hcC-------CCCEEEEEeCCHH-H------HHHHHHHHHh-cCCCC---CeE
Confidence 4689999999999999888 433 5789999998554 1 1111111111 11110 113
Q ss_pred EEeecCCCc-cCCCCCCCceeeEeccc-cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 131 FFTGVPGSF-YGRLFPRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 131 f~~~vpgSF-y~~lfP~~Svd~~~Ss~-alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
|+. +++ +..-+++ .+|++++.. ++|++-. ..+...+|+.=.+-|
T Consensus 56 ~~~---~d~~~~~~~~~-~~D~v~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~L 101 (112)
T PF12847_consen 56 FVQ---GDAEFDPDFLE-PFDLVICSGFTLHFLLP------------------------------LDERRRVLERIRRLL 101 (112)
T ss_dssp EEE---SCCHGGTTTSS-CEEEEEECSGSGGGCCH------------------------------HHHHHHHHHHHHHHE
T ss_pred EEE---CccccCcccCC-CCCEEEECCCccccccc------------------------------hhHHHHHHHHHHHhc
Confidence 433 677 3333333 499999988 6665311 045555666667888
Q ss_pred ccCCeEEEEe
Q 024331 209 VAEGRMVLTF 218 (269)
Q Consensus 209 ~pGG~lv~~~ 218 (269)
+|||++++..
T Consensus 102 ~pgG~lvi~~ 111 (112)
T PF12847_consen 102 KPGGRLVINT 111 (112)
T ss_dssp EEEEEEEEEE
T ss_pred CCCcEEEEEE
Confidence 8999999974
No 27
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=4.2e-07 Score=81.69 Aligned_cols=128 Identities=23% Similarity=0.255 Sum_probs=85.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
--.++|+|||-|+-+-.+...-| =+++..|.... +.+. .+. ..+ +.+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS~~----------M~~s-~~~-~qd-----p~i 119 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTSYD----------MIKS-CRD-AQD-----PSI 119 (325)
T ss_pred CcceeecccchhhhhHHHHhcch----------------hheeeeecchH----------HHHH-hhc-cCC-----Cce
Confidence 34789999999987766652222 34455565543 3322 211 111 233
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
-+.-.-|+=....|-+||+|+++||.++||..++|.... .+ ..-|||
T Consensus 120 ~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~------------------~c---------------k~~lKP 166 (325)
T KOG2940|consen 120 ETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMI------------------QC---------------KLALKP 166 (325)
T ss_pred EEEEEecchhcccccccchhhhhhhhhhhhhccCchHHH------------------HH---------------HHhcCC
Confidence 333344777888899999999999999999999996432 11 345679
Q ss_pred CCeEEEEecccCCCCCCChhhhHHHHH-HHHHHHHHHHccCcccc
Q 024331 211 EGRMVLTFLGRKSQDPSSKECCYIWEL-LATALNNMVSEVTKSFL 254 (269)
Q Consensus 211 GG~lv~~~~g~~~~~~~~~~~~~~~~~-l~~~l~~mv~eG~i~~~ 254 (269)
.|.++-+++|-++ +|++ ++--|.+|+.+|=|+..
T Consensus 167 Dg~FiasmlggdT----------LyELR~slqLAelER~GGiSph 201 (325)
T KOG2940|consen 167 DGLFIASMLGGDT----------LYELRCSLQLAELEREGGISPH 201 (325)
T ss_pred CccchhHHhcccc----------HHHHHHHhhHHHHHhccCCCCC
Confidence 9999999998764 2232 45568889999877653
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.43 E-value=1.4e-06 Score=76.45 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=64.0
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF 132 (269)
Q Consensus 53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~ 132 (269)
+|+|+|||+|..+..++ +++ |..+|+..|+..+ . +........ +.|.. .. +
T Consensus 2 ~vLDiGcG~G~~~~~la--------~~~-------~~~~v~gid~s~~-~------~~~a~~~~~-~~gl~----~~--i 52 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA--------ERH-------PHLQLHGYTISPE-Q------AEVGRERIR-ALGLQ----GR--I 52 (224)
T ss_pred eEEEECCCCCHHHHHHH--------HHC-------CCCEEEEEECCHH-H------HHHHHHHHH-hcCCC----cc--e
Confidence 69999999999877665 443 4578889998443 1 000111111 11211 11 1
Q ss_pred eecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 024331 133 TGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEG 212 (269)
Q Consensus 133 ~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 212 (269)
..+.+++...++| +++|+++|..++|+..+ +..+|+.=++-|+|||
T Consensus 53 ~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG 98 (224)
T smart00828 53 RIFYRDSAKDPFP-DTYDLVFGFEVIHHIKD---------------------------------KMDLFSNISRHLKDGG 98 (224)
T ss_pred EEEecccccCCCC-CCCCEeehHHHHHhCCC---------------------------------HHHHHHHHHHHcCCCC
Confidence 2223666555565 48999999999998522 2233333356777999
Q ss_pred eEEEEeccc
Q 024331 213 RMVLTFLGR 221 (269)
Q Consensus 213 ~lv~~~~g~ 221 (269)
+++++.+..
T Consensus 99 ~l~i~~~~~ 107 (224)
T smart00828 99 HLVLADFIA 107 (224)
T ss_pred EEEEEEccc
Confidence 999987643
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.43 E-value=7.1e-07 Score=82.09 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=64.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
+-+|+|+|||+|.+++.++ ++ ..+|+..|.... . +....+... ..+ +
T Consensus 121 ~~~vLDlGcG~G~~~~~la--------~~---------g~~V~avD~s~~-a------i~~~~~~~~-~~~--------l 167 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLA--------LL---------GFDVTAVDINQQ-S------LENLQEIAE-KEN--------L 167 (287)
T ss_pred CCCEEEeCCCCCHHHHHHH--------HC---------CCEEEEEECCHH-H------HHHHHHHHH-HcC--------C
Confidence 4599999999999998876 32 268899988665 0 111111111 111 1
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
-+..+.+++....+ ++++|+++|+.++|+++. .++..+|+.=.+-|+|
T Consensus 168 ~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~-------------------------------~~~~~~l~~~~~~Lkp 215 (287)
T PRK12335 168 NIRTGLYDINSASI-QEEYDFILSTVVLMFLNR-------------------------------ERIPAIIKNMQEHTNP 215 (287)
T ss_pred ceEEEEechhcccc-cCCccEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCC
Confidence 12223345544333 789999999999998632 2344555555677889
Q ss_pred CCeEEEEe
Q 024331 211 EGRMVLTF 218 (269)
Q Consensus 211 GG~lv~~~ 218 (269)
||++++..
T Consensus 216 gG~~l~v~ 223 (287)
T PRK12335 216 GGYNLIVC 223 (287)
T ss_pred CcEEEEEE
Confidence 99977654
No 30
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.37 E-value=8.8e-07 Score=83.17 Aligned_cols=108 Identities=21% Similarity=0.149 Sum_probs=66.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|..++.++ +.. + -+|+..|.. ..+..-++.. .+..+.. .++
T Consensus 123 g~~VLDIGCG~G~~~~~la--------~~g-------~-~~V~GiD~S-~~~l~q~~a~-------~~~~~~~----~~i 174 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRML--------GAG-------A-KLVVGIDPS-QLFLCQFEAV-------RKLLGND----QRA 174 (322)
T ss_pred CCEEEEeccCCcHHHHHHH--------HcC-------C-CEEEEEcCC-HHHHHHHHHH-------HHhcCCC----CCe
Confidence 4699999999999988666 431 2 258999944 3331111111 1111111 122
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
.-+++++....+ ++++|+++|..+||+... ...+|+.=++.|+|
T Consensus 175 --~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~d---------------------------------p~~~L~~l~~~Lkp 218 (322)
T PRK15068 175 --HLLPLGIEQLPA-LKAFDTVFSMGVLYHRRS---------------------------------PLDHLKQLKDQLVP 218 (322)
T ss_pred --EEEeCCHHHCCC-cCCcCEEEECChhhccCC---------------------------------HHHHHHHHHHhcCC
Confidence 224578877777 789999999888887422 11223333667889
Q ss_pred CCeEEEEecccC
Q 024331 211 EGRMVLTFLGRK 222 (269)
Q Consensus 211 GG~lv~~~~g~~ 222 (269)
||.+++..+..+
T Consensus 219 GG~lvl~~~~i~ 230 (322)
T PRK15068 219 GGELVLETLVID 230 (322)
T ss_pred CcEEEEEEEEec
Confidence 999999876554
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.36 E-value=8.5e-07 Score=72.67 Aligned_cols=100 Identities=25% Similarity=0.267 Sum_probs=64.5
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA 127 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~ 127 (269)
.++..+|+|+|||+|.++..+. +. + .+++..|.... +... .
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~~~----------~~~~---~--------- 60 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDISPQ----------MIEK---R--------- 60 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESSHH----------HHHH---T---------
T ss_pred cCCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECCHH----------HHhh---h---------
Confidence 3457899999999997755443 32 2 48889887654 1110 0
Q ss_pred CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
...+... .-....+|++++|+++|+.+|||+.. +..+|+.=.+-
T Consensus 61 ~~~~~~~---~~~~~~~~~~~fD~i~~~~~l~~~~d---------------------------------~~~~l~~l~~~ 104 (161)
T PF13489_consen 61 NVVFDNF---DAQDPPFPDGSFDLIICNDVLEHLPD---------------------------------PEEFLKELSRL 104 (161)
T ss_dssp TSEEEEE---ECHTHHCHSSSEEEEEEESSGGGSSH---------------------------------HHHHHHHHHHC
T ss_pred hhhhhhh---hhhhhhccccchhhHhhHHHHhhccc---------------------------------HHHHHHHHHHh
Confidence 0112110 00245568999999999999999753 12222222566
Q ss_pred hccCCeEEEEecccC
Q 024331 208 LVAEGRMVLTFLGRK 222 (269)
Q Consensus 208 L~pGG~lv~~~~g~~ 222 (269)
|+|||+++++.+.+.
T Consensus 105 LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 105 LKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEEEEEEEEEEBTT
T ss_pred cCCCCEEEEEEcCCc
Confidence 779999999999864
No 32
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.34 E-value=1.5e-06 Score=76.13 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchH
Q 024331 24 VQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFN 103 (269)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFn 103 (269)
+|+.+...-.|++-........-......+|+|+|||+|..+..++ +++ |..+|+..|.... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la--------~~~-------p~~~v~gVD~s~~-~- 76 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMA--------KAN-------PDINFIGIEVHEP-G- 76 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHH--------HHC-------CCccEEEEEechH-H-
Confidence 3445555555555322222111112246799999999999988776 442 5578999998765 1
Q ss_pred HHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCc-cC--CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCC
Q 024331 104 TIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSF-YG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180 (269)
Q Consensus 104 tLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSF-y~--~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~ 180 (269)
+........ ..+ . .++.+ +-+++ .. +.++++++|.++++++.+|....-. +..+
T Consensus 77 -----i~~a~~~~~-~~~--~---~~v~~--~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-----~~~~----- 133 (202)
T PRK00121 77 -----VGKALKKIE-EEG--L---TNLRL--LCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-----KRRL----- 133 (202)
T ss_pred -----HHHHHHHHH-HcC--C---CCEEE--EecCHHHHHHHHcCccccceEEEECCCCCCCcccc-----cccc-----
Confidence 111111111 111 1 22222 23666 33 3488999999999888888543110 0000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCc
Q 024331 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTK 251 (269)
Q Consensus 181 s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i 251 (269)
+...||+.=++-|+|||.++++.... +.+...+..|...|+-
T Consensus 134 ---------------~~~~~l~~i~~~LkpgG~l~i~~~~~--------------~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 134 ---------------VQPEFLALYARKLKPGGEIHFATDWE--------------GYAEYMLEVLSAEGGF 175 (202)
T ss_pred ---------------CCHHHHHHHHHHcCCCCEEEEEcCCH--------------HHHHHHHHHHHhCccc
Confidence 11122222255666999999865211 2455566777777753
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.33 E-value=3.1e-06 Score=70.12 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=67.8
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA 126 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~~ 126 (269)
+..+|+|+|||+|..+..++ ++. .|..+++..|+... +. +.+++ +.+..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~--------~~~------~~~~~i~gvD~s~~----------~i-~~a~~~~~~~~~~--- 54 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLA--------KEL------NPGAKIIGVDISEE----------MI-EYAKKRAKELGLD--- 54 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHH--------HHS------TTTSEEEEEESSHH----------HH-HHHHHHHHHTTST---
T ss_pred CCCEEEEecCcCcHHHHHHH--------Hhc------CCCCEEEEEECcHH----------HH-HHhhccccccccc---
Confidence 46899999999999988777 331 25688999998776 22 11222 22211
Q ss_pred CCceEEeecCCCccCCC--CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331 127 AGQCFFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (269)
Q Consensus 127 ~~~~f~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 204 (269)
.-.|+. +++.+.. ++ +.+|++++..++||.... ..+|+.=
T Consensus 55 -ni~~~~---~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~---------------------------------~~~l~~~ 96 (152)
T PF13847_consen 55 -NIEFIQ---GDIEDLPQELE-EKFDIIISNGVLHHFPDP---------------------------------EKVLKNI 96 (152)
T ss_dssp -TEEEEE---SBTTCGCGCSS-TTEEEEEEESTGGGTSHH---------------------------------HHHHHHH
T ss_pred -ccceEE---eehhccccccC-CCeeEEEEcCchhhccCH---------------------------------HHHHHHH
Confidence 124444 7777733 55 899999999999885331 1122222
Q ss_pred hhhhccCCeEEEEecc
Q 024331 205 SEELVAEGRMVLTFLG 220 (269)
Q Consensus 205 a~EL~pGG~lv~~~~g 220 (269)
.+-|++||.++++...
T Consensus 97 ~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 97 IRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHEEEEEEEEEEEEE
T ss_pred HHHcCCCcEEEEEECC
Confidence 4556699999998877
No 34
>PRK06202 hypothetical protein; Provisional
Probab=98.33 E-value=9.5e-06 Score=71.95 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (269)
.++.+|+|+|||+|..+..++ +..++ ..|..+|+..|+..+ +.. ..+++... . +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~--------~~~~~---~g~~~~v~gvD~s~~----------~l~-~a~~~~~~-~---~ 112 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLA--------RWARR---DGLRLEVTAIDPDPR----------AVA-FARANPRR-P---G 112 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHH--------HHHHh---CCCCcEEEEEcCCHH----------HHH-HHHhcccc-C---C
Confidence 356899999999999877655 22211 125579999998775 321 12222111 0 1
Q ss_pred ceEEeecCCCccCCCCCCCceeeEecccccccccc
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ 163 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~ 163 (269)
--+..+ +.....++++++|+++|+.+|||+.+
T Consensus 113 ~~~~~~---~~~~l~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 113 VTFRQA---VSDELVAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred CeEEEE---ecccccccCCCccEEEECCeeecCCh
Confidence 122221 22233457899999999999999754
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.30 E-value=2.2e-06 Score=77.74 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=53.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
..-+|+|+|||+|..++.++ +.. .+..+|+..|...+ ++ +..++.. ..++ .
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a--------~~~------g~~~~v~gvD~s~~----------~l-~~A~~~~~~~g~---~ 128 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAA--------RRV------GPTGKVIGVDMTPE----------ML-AKARANARKAGY---T 128 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEECCCHH----------HH-HHHHHHHHHcCC---C
Confidence 45799999999998776554 332 14468999997654 21 1122111 1111 1
Q ss_pred ceEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL 161 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL 161 (269)
++ .-+.+++....+|++++|+++|...+||.
T Consensus 129 ~v--~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~ 159 (272)
T PRK11873 129 NV--EFRLGEIEALPVADNSVDVIISNCVINLS 159 (272)
T ss_pred CE--EEEEcchhhCCCCCCceeEEEEcCcccCC
Confidence 11 22347888888999999999999999984
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.29 E-value=8.7e-06 Score=74.34 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-C----CC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-G----SA 123 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~----~~ 123 (269)
..+++|+|+|||||.-+-.++-.+.+.... ...+.++|+..|+... ++. ..++.. . .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~------~~~~~~~I~g~Dis~~----------~L~-~Ar~~~y~~~~~~~ 160 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK------AREPDVKILATDIDLK----------ALE-KARAGIYPERELED 160 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhh------cCCCCeEEEEEECCHH----------HHH-HHHcCCCCHHHHhc
Confidence 356999999999997544333222222211 1124689999998775 221 111100 0 00
Q ss_pred CC--CCCceE----------------EeecCCCccCCCCCCCceeeEeccccccccc
Q 024331 124 SG--AAGQCF----------------FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS 162 (269)
Q Consensus 124 ~~--~~~~~f----------------~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS 162 (269)
.+ ....+| |.-..++.....+|.+++|+++|.+.|||++
T Consensus 161 ~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~ 217 (264)
T smart00138 161 LPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD 217 (264)
T ss_pred CCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC
Confidence 00 000111 1112355566667899999999999999964
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.27 E-value=9.2e-06 Score=70.18 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=77.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|..++.+. ... |..+|+..|...+ .-.......++.+ . .++
T Consensus 43 ~~~vLDiGcGtG~~s~~la--------~~~-------~~~~V~~iD~s~~--------~~~~a~~~~~~~~--~---~~i 94 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA--------IAR-------PELKLTLLESNHK--------KVAFLREVKAELG--L---NNV 94 (181)
T ss_pred CCeEEEecCCCCccHHHHH--------HHC-------CCCeEEEEeCcHH--------HHHHHHHHHHHhC--C---CCe
Confidence 5799999999999988776 332 4578999998776 1111111111122 1 122
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
.-+.++..+ +.+.+++|+++|.. +|++ ..+++.=.+-|+|
T Consensus 95 --~~i~~d~~~-~~~~~~fD~I~s~~-~~~~------------------------------------~~~~~~~~~~Lkp 134 (181)
T TIGR00138 95 --EIVNGRAED-FQHEEQFDVITSRA-LASL------------------------------------NVLLELTLNLLKV 134 (181)
T ss_pred --EEEecchhh-ccccCCccEEEehh-hhCH------------------------------------HHHHHHHHHhcCC
Confidence 223466655 34578999999843 2221 0111111344779
Q ss_pred CCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceecc
Q 024331 211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQL 262 (269)
Q Consensus 211 GG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP 262 (269)
||++++.. +.. . ..-+....+.|..+|+ ...+.++|.+|
T Consensus 135 gG~lvi~~-~~~-----~------~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 173 (181)
T TIGR00138 135 GGYFLAYK-GKK-----Y------LDEIEEAKRKCQVLGV-EPLEVPPLTGP 173 (181)
T ss_pred CCEEEEEc-CCC-----c------HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence 99999763 221 1 1235566688888995 55566888888
No 38
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.26 E-value=3e-06 Score=80.27 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=53.7
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..++.++ +.. +..+|+..|+..+ ++. ..+++... .+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La--------~~~-------~~~~VtgVD~S~~----------mL~-~A~~k~~~-----~~ 161 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIV--------KHV-------DAKNVTILDQSPH----------QLA-KAKQKEPL-----KE 161 (340)
T ss_pred CCCEEEEEecCCcHHHHHHH--------HHC-------CCCEEEEEECCHH----------HHH-HHHHhhhc-----cC
Confidence 35799999999999887666 432 3368999998655 221 12211110 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL 161 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL 161 (269)
+ ..+.++.....|+++++|+++++.++|++
T Consensus 162 i--~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 162 C--KIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred C--eEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 1 12458888888999999999999999974
No 39
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.26 E-value=3.6e-05 Score=66.58 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=68.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..+..++ +.+ ++..+++..|.... . .+..+.+..... +-
T Consensus 39 ~~~~vldiG~G~G~~~~~~~--------~~~------~~~~~~~~iD~~~~----------~-~~~~~~~~~~~~---~i 90 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA--------KSA------PDRGKVTGVDFSSE----------M-LEVAKKKSELPL---NI 90 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH--------Hhc------CCCceEEEEECCHH----------H-HHHHHHHhccCC---Cc
Confidence 46899999999999887766 432 12268899987443 1 111111111100 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
.++. +++...+++++++|+++++..+|+..+ ...+|+.-.+.|+
T Consensus 91 ~~~~---~d~~~~~~~~~~~D~i~~~~~~~~~~~---------------------------------~~~~l~~~~~~L~ 134 (223)
T TIGR01934 91 EFIQ---ADAEALPFEDNSFDAVTIAFGLRNVTD---------------------------------IQKALREMYRVLK 134 (223)
T ss_pred eEEe---cchhcCCCCCCcEEEEEEeeeeCCccc---------------------------------HHHHHHHHHHHcC
Confidence 2333 777787888999999999999887422 1234555567778
Q ss_pred cCCeEEEEeccc
Q 024331 210 AEGRMVLTFLGR 221 (269)
Q Consensus 210 pGG~lv~~~~g~ 221 (269)
|||++++.....
T Consensus 135 ~gG~l~~~~~~~ 146 (223)
T TIGR01934 135 PGGRLVILEFSK 146 (223)
T ss_pred CCcEEEEEEecC
Confidence 999999876543
No 40
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.25 E-value=5.2e-06 Score=77.03 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHH
Q 024331 34 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ 113 (269)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~ 113 (269)
.+|+....++.... +...+|+|+|||+|..|..++ +... ...+++..|+... ++.
T Consensus 48 ~il~~~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll--------~~l~------~~~~~~~iDiS~~----------mL~ 102 (301)
T TIGR03438 48 AILERHADEIAAAT-GAGCELVELGSGSSRKTRLLL--------DALR------QPARYVPIDISAD----------ALK 102 (301)
T ss_pred HHHHHHHHHHHHhh-CCCCeEEecCCCcchhHHHHH--------Hhhc------cCCeEEEEECCHH----------HHH
Confidence 34444444443222 235789999999999999888 4321 1378999999886 332
Q ss_pred HHHHHhcCCCCCCCCceEEeecCCCccCC-CCCCC----ceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHH
Q 024331 114 KILRKQLGSASGAAGQCFFTGVPGSFYGR-LFPRN----SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTA 188 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~~-lfP~~----Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~a 188 (269)
...++ ....+ +.+-+.++-|+|... -+|.. ...++++..++++++.
T Consensus 103 ~a~~~-l~~~~---p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~------------------------- 153 (301)
T TIGR03438 103 ESAAA-LAADY---PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP------------------------- 153 (301)
T ss_pred HHHHH-HHhhC---CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH-------------------------
Confidence 21111 10001 234455566898863 35544 3556777677777531
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 189 YYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 189 y~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
.|..+||+.=++-|+|||+|++.+-...
T Consensus 154 ------~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 154 ------EEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred ------HHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 2233444444556779999999775544
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.24 E-value=6.5e-07 Score=68.62 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=38.6
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHH---HHHHHHhcCCCCCCCCceE
Q 024331 55 ADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASF---QKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 55 aD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~---~~~~~~~~~~~~~~~~~~f 131 (269)
+|+|||+|..+..++ +.+ |..+++..|.... ++ ++++...... ....
T Consensus 1 LdiGcG~G~~~~~l~--------~~~-------~~~~~~~~D~s~~----------~l~~a~~~~~~~~~~-----~~~~ 50 (99)
T PF08242_consen 1 LDIGCGTGRLLRALL--------EEL-------PDARYTGVDISPS----------MLERARERLAELGND-----NFER 50 (99)
T ss_dssp -EESTTTS-TTTTHH--------HHC--------EEEEEEEESSSS----------TTSTTCCCHHHCT--------EEE
T ss_pred CEeCccChHHHHHHH--------HhC-------CCCEEEEEECCHH----------HHHHHHHHhhhcCCc-----ceeE
Confidence 699999999999888 553 6799999999887 32 1111111101 1123
Q ss_pred EeecCCCccCCCCCCCceeeEecccccccc
Q 024331 132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWL 161 (269)
Q Consensus 132 ~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL 161 (269)
+.....+..... +.+++|+++++..+||+
T Consensus 51 ~~~~~~~~~~~~-~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 51 LRFDVLDLFDYD-PPESFDLVVASNVLHHL 79 (99)
T ss_dssp EE--SSS---CC-C----SEEEEE-TTS--
T ss_pred EEeecCChhhcc-cccccceehhhhhHhhh
Confidence 333333333322 22799999999999997
No 42
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.23 E-value=2.2e-06 Score=75.12 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=49.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
++-+++|+|||.|+||+.++ ++ -++|..-|....-...+ .+ +..+.+ + +
T Consensus 30 ~~g~~LDlgcG~GRNalyLA--------~~---------G~~VtAvD~s~~al~~l-------~~-~a~~~~--l----~ 78 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLA--------SQ---------GFDVTAVDISPVALEKL-------QR-LAEEEG--L----D 78 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHH--------HT---------T-EEEEEESSHHHHHHH-------HH-HHHHTT-------T
T ss_pred CCCcEEEcCCCCcHHHHHHH--------HC---------CCeEEEEECCHHHHHHH-------HH-HHhhcC--c----e
Confidence 46899999999999999998 54 38999999877622111 11 111111 1 2
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS 162 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS 162 (269)
+...-.++...-+| ..+|+++|...+|.|.
T Consensus 79 --i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 79 --IRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp --EEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred --eEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 33333566555565 6899999999999875
No 43
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.23 E-value=8.5e-06 Score=72.88 Aligned_cols=139 Identities=21% Similarity=0.294 Sum_probs=93.0
Q ss_pred CchHHHhcHH---HHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcce
Q 024331 15 GTSYASNSLV---QEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQ 91 (269)
Q Consensus 15 ~~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~q 91 (269)
+.-|++||.+ |.+..++++.+|.. ..+++--|+|+|||||-.+-.+- .+.-+
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLELLal--------p~~~~~~iLDIGCGsGLSg~vL~-----------------~~Gh~ 74 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALELLAL--------PGPKSGLILDIGCGSGLSGSVLS-----------------DSGHQ 74 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHHhhC--------CCCCCcEEEEeccCCCcchheec-----------------cCCce
Confidence 3468889874 66666666555442 22358899999999996643222 24578
Q ss_pred EEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCC
Q 024331 92 VFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESN 171 (269)
Q Consensus 92 v~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~n 171 (269)
.+..|..-- |+......+.. +.+-.+-++ .+.+|+++++|=++|-.|+|||=...+...
T Consensus 75 wiGvDiSps----------ML~~a~~~e~e------gdlil~DMG---~GlpfrpGtFDg~ISISAvQWLcnA~~s~~-- 133 (270)
T KOG1541|consen 75 WIGVDISPS----------MLEQAVERELE------GDLILCDMG---EGLPFRPGTFDGVISISAVQWLCNADKSLH-- 133 (270)
T ss_pred EEeecCCHH----------HHHHHHHhhhh------cCeeeeecC---CCCCCCCCccceEEEeeeeeeecccCcccc--
Confidence 888887654 55433333221 122333233 789999999999999999999866544322
Q ss_pred CcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEec
Q 024331 172 KGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL 219 (269)
Q Consensus 172 kg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~ 219 (269)
. =++-+.+|+..=..-|++|++-|+.+-
T Consensus 134 ----------~----------P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 134 ----------V----------PKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred ----------C----------hHHHHHHHhhhhhhhhccCceeEEEec
Confidence 1 135677788777888999999999874
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.21 E-value=1.2e-06 Score=67.70 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=48.0
Q ss_pred EEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCceEE
Q 024331 54 IADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQCFF 132 (269)
Q Consensus 54 IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~~f~ 132 (269)
|+|+|||+|..+..+. +.+ +..|+.+++..|+..+ ++. ..+++. ..++ .--|+
T Consensus 1 ILDlgcG~G~~~~~l~--------~~~----~~~~~~~~~gvD~s~~----------~l~-~~~~~~~~~~~---~~~~~ 54 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA--------RRF----DAGPSSRVIGVDISPE----------MLE-LAKKRFSEDGP---KVRFV 54 (101)
T ss_dssp -EEET-TTSHHHHHHH--------HHS---------SEEEEEES-HH----------HHH-HHHHHSHHTTT---TSEEE
T ss_pred CEEeecCCcHHHHHHH--------HHh----hhcccceEEEEECCHH----------HHH-HHHHhchhcCC---ceEEE
Confidence 7999999999988877 432 1125689999998776 221 122211 0111 12344
Q ss_pred eecCCCccCCCCCCCceeeEecccc-cccccc
Q 024331 133 TGVPGSFYGRLFPRNSVHLFHSSYS-LQWLSQ 163 (269)
Q Consensus 133 ~~vpgSFy~~lfP~~Svd~~~Ss~a-lHWLS~ 163 (269)
. +++-+..++++++|+++++.+ +|++++
T Consensus 55 ~---~D~~~l~~~~~~~D~v~~~~~~~~~~~~ 83 (101)
T PF13649_consen 55 Q---ADARDLPFSDGKFDLVVCSGLSLHHLSP 83 (101)
T ss_dssp E---SCTTCHHHHSSSEEEEEE-TTGGGGSSH
T ss_pred E---CCHhHCcccCCCeeEEEEcCCccCCCCH
Confidence 4 777777788999999999665 887543
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.20 E-value=2.2e-06 Score=76.40 Aligned_cols=105 Identities=21% Similarity=0.331 Sum_probs=72.8
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
.+.+|+|+|||+|..|-+++ +|+ |..+|..-|-..- |+. +..++. . .-
T Consensus 30 ~~~~v~DLGCGpGnsTelL~--------~Rw-------P~A~i~GiDsS~~----------Mla-~Aa~rl-p-----~~ 77 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLA--------RRW-------PDAVITGIDSSPA----------MLA-KAAQRL-P-----DA 77 (257)
T ss_pred ccceeeecCCCCCHHHHHHH--------HhC-------CCCeEeeccCCHH----------HHH-HHHHhC-C-----CC
Confidence 47899999999999999888 887 8899999996554 442 333321 1 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
-|.- ++ -...-|+...|++||+-+||||.+-|..+. .|-. +|.
T Consensus 78 ~f~~---aD-l~~w~p~~~~dllfaNAvlqWlpdH~~ll~--------------------------rL~~-------~L~ 120 (257)
T COG4106 78 TFEE---AD-LRTWKPEQPTDLLFANAVLQWLPDHPELLP--------------------------RLVS-------QLA 120 (257)
T ss_pred ceec---cc-HhhcCCCCccchhhhhhhhhhccccHHHHH--------------------------HHHH-------hhC
Confidence 2222 11 123458999999999999999876554322 1222 456
Q ss_pred cCCeEEEEecccCC
Q 024331 210 AEGRMVLTFLGRKS 223 (269)
Q Consensus 210 pGG~lv~~~~g~~~ 223 (269)
|||.|.+.++..-+
T Consensus 121 Pgg~LAVQmPdN~d 134 (257)
T COG4106 121 PGGVLAVQMPDNLD 134 (257)
T ss_pred CCceEEEECCCccC
Confidence 99999999987654
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.19 E-value=8.8e-06 Score=71.14 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=69.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC-CCCCCCc
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS-ASGAAGQ 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~-~~~~~~~ 129 (269)
..+|+|+|||+|..+..++ +.+ ++..+++..|+..+ .. +..+++... +. ..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~--------~~~------~~~~~v~~~D~s~~----------~~-~~a~~~~~~~~~--~~~ 104 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALA--------KAV------GKTGEVVGLDFSEG----------ML-AVGREKLRDLGL--SGN 104 (239)
T ss_pred CCeEEEeCCCCCHHHHHHH--------HHc------CCCCeEEEEeCCHH----------HH-HHHHHhhccccc--ccC
Confidence 4799999999999888766 432 12588999998665 11 111111100 00 012
Q ss_pred -eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 130 -CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 130 -~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
.|+ -+++....++++++|++++++.+|+.++. ..+|+.-.+-|
T Consensus 105 ~~~~---~~d~~~~~~~~~~~D~I~~~~~l~~~~~~---------------------------------~~~l~~~~~~L 148 (239)
T PRK00216 105 VEFV---QGDAEALPFPDNSFDAVTIAFGLRNVPDI---------------------------------DKALREMYRVL 148 (239)
T ss_pred eEEE---ecccccCCCCCCCccEEEEecccccCCCH---------------------------------HHHHHHHHHhc
Confidence 233 37788877888999999999999885431 12333335567
Q ss_pred ccCCeEEEEecccC
Q 024331 209 VAEGRMVLTFLGRK 222 (269)
Q Consensus 209 ~pGG~lv~~~~g~~ 222 (269)
+|||.+++......
T Consensus 149 ~~gG~li~~~~~~~ 162 (239)
T PRK00216 149 KPGGRLVILEFSKP 162 (239)
T ss_pred cCCcEEEEEEecCC
Confidence 79999988766543
No 47
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.18 E-value=2.3e-05 Score=72.52 Aligned_cols=112 Identities=15% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (269)
.+..+|+|+|||+|..++.++ +++ |..+++..|+|.- +....+... +.+.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~--------~~~-------p~~~~~~~D~~~~--------~~~a~~~~~-~~gl------ 197 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAML--------KHF-------PELDSTILNLPGA--------IDLVNENAA-EKGV------ 197 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHH--------HHC-------CCCEEEEEecHHH--------HHHHHHHHH-hCCc------
Confidence 345799999999998887777 554 6788999998631 221111111 1111
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
.-.+..++++|+...+|+ .|+++.+..+|-.+. .+...+|+.=.+-|
T Consensus 198 ~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~-------------------------------~~~~~il~~~~~~L 244 (306)
T TIGR02716 198 ADRMRGIAVDIYKESYPE--ADAVLFCRILYSANE-------------------------------QLSTIMCKKAFDAM 244 (306)
T ss_pred cceEEEEecCccCCCCCC--CCEEEeEhhhhcCCh-------------------------------HHHHHHHHHHHHhc
Confidence 112445669999877776 499988888873111 11122233235667
Q ss_pred ccCCeEEEEecccCC
Q 024331 209 VAEGRMVLTFLGRKS 223 (269)
Q Consensus 209 ~pGG~lv~~~~g~~~ 223 (269)
+|||++++.-+..++
T Consensus 245 ~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 245 RSGGRLLILDMVIDD 259 (306)
T ss_pred CCCCEEEEEEeccCC
Confidence 899999999765543
No 48
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.17 E-value=7.5e-06 Score=74.56 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=79.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+.++++|++||||-.++.+++.+-.+-. ..+-+|+-.|+..+ ++....+++...++.. .+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~---------~~~~~V~v~Dinp~----------mL~vgkqRa~~~~l~~-~~ 159 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFG---------DRESKVTVLDINPH----------MLAVGKQRAKKRPLKA-SS 159 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccC---------CCCceEEEEeCCHH----------HHHHHHHHHhhcCCCc-CC
Confidence 4689999999999999987733322211 23467888887665 5543222221111200 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+ +.-+.|+....+||++|+|...+++.+--+-+++.. ..||| |.||
T Consensus 160 ~-~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~-----------------l~EAY----------------RVLK 205 (296)
T KOG1540|consen 160 R-VEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA-----------------LREAY----------------RVLK 205 (296)
T ss_pred c-eEEEeCCcccCCCCCCcceeEEEecceecCCCHHHH-----------------HHHHH----------------HhcC
Confidence 1 222559999999999999999999988866554443 23455 7899
Q ss_pred cCCeEEEEecccCC
Q 024331 210 AEGRMVLTFLGRKS 223 (269)
Q Consensus 210 pGG~lv~~~~g~~~ 223 (269)
|||++.+..+..-+
T Consensus 206 pGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 206 PGGRFSCLEFSKVE 219 (296)
T ss_pred CCcEEEEEEccccc
Confidence 99999998887754
No 49
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.14 E-value=1.3e-05 Score=70.82 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=68.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+..+|+|+|||+|.-+..++ ++. .+.-+|+..|+.. .+ .++ +-
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~--------~~~------~~~~~V~aVDi~~--~~----~~~-----------------~v 93 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAV--------TQI------GDKGRVIACDILP--MD----PIV-----------------GV 93 (209)
T ss_pred CCCEEEEEcccCCHHHHHHH--------HHc------CCCceEEEEeccc--cc----CCC-----------------Cc
Confidence 35699999999999887776 442 1346899999854 10 000 11
Q ss_pred eEEeecCCCccCC--------CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 024331 130 CFFTGVPGSFYGR--------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL 201 (269)
Q Consensus 130 ~f~~~vpgSFy~~--------lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 201 (269)
.++. +++... .++++++|+++|..+.||... |. . ..+.. .......|
T Consensus 94 ~~i~---~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~------------d~~~~-------~~~~~~~L 148 (209)
T PRK11188 94 DFLQ---GDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--V------------DIPRA-------MYLVELAL 148 (209)
T ss_pred EEEe---cCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--H------------HHHHH-------HHHHHHHH
Confidence 2333 677764 378899999999999999321 10 0 00000 01123444
Q ss_pred hhhhhhhccCCeEEEEeccc
Q 024331 202 KCRSEELVAEGRMVLTFLGR 221 (269)
Q Consensus 202 ~~Ra~EL~pGG~lv~~~~g~ 221 (269)
+.=.+-|+|||.+++..+..
T Consensus 149 ~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 149 DMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHHcCCCCEEEEEEecC
Confidence 44456677999999976544
No 50
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.13 E-value=8.2e-06 Score=76.57 Aligned_cols=108 Identities=21% Similarity=0.155 Sum_probs=62.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|..+..++ ... + -.|+..|.... |-.-|+. .++..+.. ..+
T Consensus 122 g~~VLDvGCG~G~~~~~~~--------~~g-------~-~~v~GiDpS~~-ml~q~~~-------~~~~~~~~----~~v 173 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRML--------GHG-------A-KSLVGIDPTVL-FLCQFEA-------VRKLLDND----KRA 173 (314)
T ss_pred CCEEEEeccCCcHHHHHHH--------HcC-------C-CEEEEEcCCHH-HHHHHHH-------HHHHhccC----CCe
Confidence 4799999999999876555 321 2 26788885442 2111111 11111110 122
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
.+ .++++....+ .+++|+++|..+|||+.. +..+.++. ++-|+|
T Consensus 174 ~~--~~~~ie~lp~-~~~FD~V~s~gvL~H~~d------------------p~~~L~el---------------~r~Lkp 217 (314)
T TIGR00452 174 IL--EPLGIEQLHE-LYAFDTVFSMGVLYHRKS------------------PLEHLKQL---------------KHQLVI 217 (314)
T ss_pred EE--EECCHHHCCC-CCCcCEEEEcchhhccCC------------------HHHHHHHH---------------HHhcCC
Confidence 21 3456665554 358999999999998522 11122222 567779
Q ss_pred CCeEEEEecccC
Q 024331 211 EGRMVLTFLGRK 222 (269)
Q Consensus 211 GG~lv~~~~g~~ 222 (269)
||.|++..+..+
T Consensus 218 GG~Lvletl~i~ 229 (314)
T TIGR00452 218 KGELVLETLVID 229 (314)
T ss_pred CCEEEEEEEEec
Confidence 999999876543
No 51
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.09 E-value=1.1e-05 Score=70.11 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=52.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
.-+|+|+|||+|..++.++ +++ |+.+|+..|+... . +........+ .+ . .++
T Consensus 17 ~~~ilDiGcG~G~~~~~la--------~~~-------p~~~v~gvD~~~~-~------l~~a~~~~~~-~~--l---~ni 68 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMA--------KQN-------PDKNFLGIEIHTP-I------VLAANNKANK-LG--L---KNL 68 (194)
T ss_pred CceEEEeCCCccHHHHHHH--------HhC-------CCCCEEEEEeeHH-H------HHHHHHHHHH-hC--C---CCE
Confidence 4599999999999988777 543 6789999998654 0 1111111111 11 1 233
Q ss_pred EEeecCCCccC---CCCCCCceeeEecccccccc
Q 024331 131 FFTGVPGSFYG---RLFPRNSVHLFHSSYSLQWL 161 (269)
Q Consensus 131 f~~~vpgSFy~---~lfP~~Svd~~~Ss~alHWL 161 (269)
. .+-++... ..+|++++|.++..+..+|.
T Consensus 69 ~--~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~ 100 (194)
T TIGR00091 69 H--VLCGDANELLDKFFPDGSLSKVFLNFPDPWP 100 (194)
T ss_pred E--EEccCHHHHHHhhCCCCceeEEEEECCCcCC
Confidence 2 23366653 34788899999999998894
No 52
>PTZ00146 fibrillarin; Provisional
Probab=98.05 E-value=0.00013 Score=67.94 Aligned_cols=141 Identities=12% Similarity=0.101 Sum_probs=76.7
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+..+|+|+|||+|..|..++ +.. .++=.||..|+... .+..+......+ .+
T Consensus 132 pG~~VLDLGaG~G~~t~~lA--------diV------G~~G~VyAVD~s~r-------~~~dLl~~ak~r--------~N 182 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVS--------DLV------GPEGVVYAVEFSHR-------SGRDLTNMAKKR--------PN 182 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHH--------HHh------CCCCEEEEEECcHH-------HHHHHHHHhhhc--------CC
Confidence 34699999999999988777 432 13457899886543 111111111111 12
Q ss_pred e-EEeecCCCccCC---CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 130 C-FFTGVPGSFYGR---LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 130 ~-f~~~vpgSFy~~---lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
+ ++. ++.... .++..++|++++..+..| . .+. +.....+|
T Consensus 183 I~~I~---~Da~~p~~y~~~~~~vDvV~~Dva~pd------q------------------~~i----l~~na~r~----- 226 (293)
T PTZ00146 183 IVPII---EDARYPQKYRMLVPMVDVIFADVAQPD------Q------------------ARI----VALNAQYF----- 226 (293)
T ss_pred CEEEE---CCccChhhhhcccCCCCEEEEeCCCcc------h------------------HHH----HHHHHHHh-----
Confidence 2 222 444221 123458999999665211 0 001 11223344
Q ss_pred hhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccccc
Q 024331 206 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYK 265 (269)
Q Consensus 206 ~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~ 265 (269)
|||||.+++.+-.+..+.....+ +.+++.++.|.++|+ +.++..+|+-|+
T Consensus 227 --LKpGG~~vI~ika~~id~g~~pe-----~~f~~ev~~L~~~GF---~~~e~v~L~Py~ 276 (293)
T PTZ00146 227 --LKNGGHFIISIKANCIDSTAKPE-----VVFASEVQKLKKEGL---KPKEQLTLEPFE 276 (293)
T ss_pred --ccCCCEEEEEEeccccccCCCHH-----HHHHHHHHHHHHcCC---ceEEEEecCCcc
Confidence 55999999976555433222212 234455588888998 555666676554
No 53
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.02 E-value=2.8e-05 Score=67.73 Aligned_cols=101 Identities=21% Similarity=0.186 Sum_probs=63.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..++.++ .+. |..+|+..|.... +-.......++.+ . .+
T Consensus 45 ~g~~VLDiGcGtG~~al~la--------~~~-------~~~~V~giD~s~~--------~l~~A~~~~~~~~--l---~~ 96 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLA--------IAR-------PELKVTLVDSLGK--------KIAFLREVAAELG--L---KN 96 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHH--------HHC-------CCCeEEEEeCcHH--------HHHHHHHHHHHcC--C---CC
Confidence 36899999999999888777 332 5678999998665 1111111111112 1 12
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+.-+.++..+... ++++|+++|.. + .++..|++.-++-|+
T Consensus 97 --i~~~~~d~~~~~~-~~~fDlV~~~~-----------~--------------------------~~~~~~l~~~~~~Lk 136 (187)
T PRK00107 97 --VTVVHGRAEEFGQ-EEKFDVVTSRA-----------V--------------------------ASLSDLVELCLPLLK 136 (187)
T ss_pred --EEEEeccHhhCCC-CCCccEEEEcc-----------c--------------------------cCHHHHHHHHHHhcC
Confidence 3334466655444 77999999831 0 123456677788899
Q ss_pred cCCeEEEEe
Q 024331 210 AEGRMVLTF 218 (269)
Q Consensus 210 pGG~lv~~~ 218 (269)
|||++++..
T Consensus 137 pGG~lv~~~ 145 (187)
T PRK00107 137 PGGRFLALK 145 (187)
T ss_pred CCeEEEEEe
Confidence 999999875
No 54
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.00 E-value=1.9e-05 Score=76.11 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=68.4
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (269)
-.++|+|||+|..++.++ ++ .|+..++..|+-.. +...-.++....+. .++.
T Consensus 124 p~vLEIGcGsG~~ll~lA--------~~-------~P~~~~iGIEI~~~----------~i~~a~~ka~~~gL---~NV~ 175 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQA--------KN-------NPNKLFIGIEIHTP----------SIEQVLKQIELLNL---KNLL 175 (390)
T ss_pred CeEEEEcCcccHHHHHHH--------Hh-------CCCCCEEEEECCHH----------HHHHHHHHHHHcCC---CcEE
Confidence 489999999999988877 54 27899999998665 22111111111112 3444
Q ss_pred EeecCCCccC--CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 132 FTGVPGSFYG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 132 ~~~vpgSFy~--~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+. .++... ..||++|+|.++.++...|..+ .+ .+. -...||+.=++-|+
T Consensus 176 ~i--~~DA~~ll~~~~~~s~D~I~lnFPdPW~Kk---------rH---RRl---------------v~~~fL~e~~RvLk 226 (390)
T PRK14121 176 II--NYDARLLLELLPSNSVEKIFVHFPVPWDKK---------PH---RRV---------------ISEDFLNEALRVLK 226 (390)
T ss_pred EE--ECCHHHhhhhCCCCceeEEEEeCCCCcccc---------ch---hhc---------------cHHHHHHHHHHHcC
Confidence 33 355432 4689999999999887778211 00 000 01344444477788
Q ss_pred cCCeEEEEe
Q 024331 210 AEGRMVLTF 218 (269)
Q Consensus 210 pGG~lv~~~ 218 (269)
|||.+.+.+
T Consensus 227 pGG~l~l~T 235 (390)
T PRK14121 227 PGGTLELRT 235 (390)
T ss_pred CCcEEEEEE
Confidence 999999965
No 55
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.97 E-value=3.8e-05 Score=68.43 Aligned_cols=104 Identities=20% Similarity=0.381 Sum_probs=75.1
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (269)
.+.-+|+|+|+|+|..++.++ +++ |.++++.-|||.. ++...+ . .
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------~~~~~~------~------~ 143 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA--------RAY-------PNLRATVFDLPEV--------IEQAKE------A------D 143 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEE-HHH--------HCCHHH------T------T
T ss_pred cCccEEEeccCcchHHHHHHH--------HHC-------CCCcceeeccHhh--------hhcccc------c------c
Confidence 345689999999999988777 765 7899999999986 332211 1 1
Q ss_pred ceEEeecCCCccCCCCCCCceeeEecccccc-ccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH-WLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
. +.-+||+|+ ..+|. .|+++-...|| | ..++-..+|+.=++-
T Consensus 144 r--v~~~~gd~f-~~~P~--~D~~~l~~vLh~~--------------------------------~d~~~~~iL~~~~~a 186 (241)
T PF00891_consen 144 R--VEFVPGDFF-DPLPV--ADVYLLRHVLHDW--------------------------------SDEDCVKILRNAAAA 186 (241)
T ss_dssp T--EEEEES-TT-TCCSS--ESEEEEESSGGGS---------------------------------HHHHHHHHHHHHHH
T ss_pred c--cccccccHH-hhhcc--ccceeeehhhhhc--------------------------------chHHHHHHHHHHHHH
Confidence 2 233679999 89999 99999999998 6 124555666666777
Q ss_pred hccC--CeEEEEecccCCC
Q 024331 208 LVAE--GRMVLTFLGRKSQ 224 (269)
Q Consensus 208 L~pG--G~lv~~~~g~~~~ 224 (269)
|+|| |++++.-.-.++.
T Consensus 187 l~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 187 LKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp SEECTTEEEEEEEEEECSS
T ss_pred hCCCCCCeEEEEeeccCCC
Confidence 9999 9999998877654
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.97 E-value=0.00017 Score=61.89 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=27.8
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 99 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~ 99 (269)
...+|+|+|||+|..++.++ +++ |..+|+..|...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la--------~~~-------~~~~v~~vD~s~ 65 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA--------LQF-------PSLQVTAIERNP 65 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH--------HHC-------CCCEEEEEECCH
Confidence 45799999999999988777 442 567899999754
No 57
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.94 E-value=3.6e-05 Score=67.71 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=64.6
Q ss_pred CCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEE
Q 024331 14 GGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVF 93 (269)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~ 93 (269)
|.. |.+....+.. +......+.+.+..+ +++.+|+|+|||+|..+..+. +.. |..+++
T Consensus 14 g~~-~~~rn~~~~~-~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~--------~~~-------~~~~v~ 71 (204)
T TIGR03587 14 GKE-YIDRNSRQSL-VAAKLAMFARALNRL-----PKIASILELGANIGMNLAALK--------RLL-------PFKHIY 71 (204)
T ss_pred cch-hhhccccHHH-HHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHH--------HhC-------CCCeEE
Confidence 444 4444433322 233445555555432 345789999999998877665 431 457899
Q ss_pred ecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331 94 LNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL 161 (269)
Q Consensus 94 ~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL 161 (269)
..|+..+ +.. .+++.. . .-.+. .+++.. +||++++|++++..+||++
T Consensus 72 giDiS~~----------~l~-~A~~~~-~-----~~~~~---~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 72 GVEINEY----------AVE-KAKAYL-P-----NINII---QGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred EEECCHH----------HHH-HHHhhC-C-----CCcEE---EeeccC-CCCCCCEEEEEECChhhhC
Confidence 9998776 322 122211 1 11232 366666 8899999999999999875
No 58
>PRK04266 fibrillarin; Provisional
Probab=97.93 E-value=0.00011 Score=65.92 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=32.8
Q ss_pred hhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceecccc
Q 024331 205 SEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNY 264 (269)
Q Consensus 205 a~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~ 264 (269)
.+.|||||.+++++..+..+-... .. ...++.++.|.+.|+ +.+...++..|
T Consensus 163 ~r~LKpGG~lvI~v~~~~~d~~~~-~~----~~~~~~~~~l~~aGF---~~i~~~~l~p~ 214 (226)
T PRK04266 163 EFFLKDGGYLLLAIKARSIDVTKD-PK----EIFKEEIRKLEEGGF---EILEVVDLEPY 214 (226)
T ss_pred HHhcCCCcEEEEEEecccccCcCC-HH----HHHHHHHHHHHHcCC---eEEEEEcCCCC
Confidence 456779999999877654321111 11 234566788888898 66666666555
No 59
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.88 E-value=0.0001 Score=70.82 Aligned_cols=106 Identities=12% Similarity=0.207 Sum_probs=65.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..++.++ +++ ..+|+..|+... +. +..+++. .+. .
T Consensus 167 ~g~rVLDIGcG~G~~a~~la--------~~~--------g~~V~giDlS~~----------~l-~~A~~~~-~~l----~ 214 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAA--------EHY--------GVSVVGVTISAE----------QQ-KLAQERC-AGL----P 214 (383)
T ss_pred CCCEEEEeCCCccHHHHHHH--------HHC--------CCEEEEEeCCHH----------HH-HHHHHHh-ccC----e
Confidence 35799999999999887666 432 368899998765 22 1122221 111 1
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+....+++.. + ++++|.++|..+++|+.. +++..+++.=.+-|+
T Consensus 215 --v~~~~~D~~~-l--~~~fD~Ivs~~~~ehvg~-------------------------------~~~~~~l~~i~r~Lk 258 (383)
T PRK11705 215 --VEIRLQDYRD-L--NGQFDRIVSVGMFEHVGP-------------------------------KNYRTYFEVVRRCLK 258 (383)
T ss_pred --EEEEECchhh-c--CCCCCEEEEeCchhhCCh-------------------------------HHHHHHHHHHHHHcC
Confidence 2222345433 2 579999999888887411 122233333356677
Q ss_pred cCCeEEEEecccCC
Q 024331 210 AEGRMVLTFLGRKS 223 (269)
Q Consensus 210 pGG~lv~~~~g~~~ 223 (269)
|||++++..++.+.
T Consensus 259 pGG~lvl~~i~~~~ 272 (383)
T PRK11705 259 PDGLFLLHTIGSNK 272 (383)
T ss_pred CCcEEEEEEccCCC
Confidence 99999999887654
No 60
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.88 E-value=2.9e-05 Score=68.96 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA 127 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~ 127 (269)
.++..+|||+|||.+.-+. ++. ..+.|+--||-..
T Consensus 70 ~~~~~viaD~GCGdA~la~--------~~~----------~~~~V~SfDLva~--------------------------- 104 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAK--------AVP----------NKHKVHSFDLVAP--------------------------- 104 (219)
T ss_dssp S-TTS-EEEES-TT-HHHH--------H------------S---EEEEESS-S---------------------------
T ss_pred cCCCEEEEECCCchHHHHH--------hcc----------cCceEEEeeccCC---------------------------
Confidence 4567899999999986552 121 2366777777543
Q ss_pred CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
.+ +|.+ -+.-..+++++|+|+++...||.= .||..||+.=.|.
T Consensus 105 n~-~Vta--cdia~vPL~~~svDv~VfcLSLMG----------------------------------Tn~~~fi~EA~Rv 147 (219)
T PF05148_consen 105 NP-RVTA--CDIANVPLEDESVDVAVFCLSLMG----------------------------------TNWPDFIREANRV 147 (219)
T ss_dssp ST-TEEE--S-TTS-S--TT-EEEEEEES---S----------------------------------S-HHHHHHHHHHH
T ss_pred CC-CEEE--ecCccCcCCCCceeEEEEEhhhhC----------------------------------CCcHHHHHHHHhe
Confidence 01 1222 355678899999999998777642 3677888888899
Q ss_pred hccCCeEEEEecccC
Q 024331 208 LVAEGRMVLTFLGRK 222 (269)
Q Consensus 208 L~pGG~lv~~~~g~~ 222 (269)
|||||.|.+......
T Consensus 148 LK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 148 LKPGGILKIAEVKSR 162 (219)
T ss_dssp EEEEEEEEEEEEGGG
T ss_pred eccCcEEEEEEeccc
Confidence 999999999987544
No 61
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.86 E-value=6.1e-05 Score=68.11 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=78.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (269)
-.+.|+|||+|..++.++ +.+ =+|+..|.... |+. .+.++ . ++-
T Consensus 35 ~~a~DvG~G~Gqa~~~ia--------e~~---------k~VIatD~s~~----------mL~-~a~k~--~------~~~ 78 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIA--------EHY---------KEVIATDVSEA----------MLK-VAKKH--P------PVT 78 (261)
T ss_pred ceEEEeccCCCcchHHHH--------Hhh---------hhheeecCCHH----------HHH-HhhcC--C------Ccc
Confidence 389999999996655555 444 35777887665 432 12222 1 111
Q ss_pred EeecCCCc-----cCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331 132 FTGVPGSF-----YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (269)
Q Consensus 132 ~~~vpgSF-----y~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 206 (269)
-+-+|-+| ...+=+++|||++.+.-|+||+ |+.+|.+.=.|
T Consensus 79 y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF----------------------------------dle~fy~~~~r 124 (261)
T KOG3010|consen 79 YCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF----------------------------------DLERFYKEAYR 124 (261)
T ss_pred cccCCccccccccccccCCCcceeeehhhhhHHhh----------------------------------chHHHHHHHHH
Confidence 12233333 3455569999999999999993 56667777778
Q ss_pred hhccCCeEEEEecccCCCCCCChhhhH-H----H---HHHHHHHHHHHHccCc
Q 024331 207 ELVAEGRMVLTFLGRKSQDPSSKECCY-I----W---ELLATALNNMVSEVTK 251 (269)
Q Consensus 207 EL~pGG~lv~~~~g~~~~~~~~~~~~~-~----~---~~l~~~l~~mv~eG~i 251 (269)
.||+.|-++....=+++ .....+... + + .....-++.|.-+|+-
T Consensus 125 vLRk~Gg~iavW~Y~dd-~v~~pE~dsv~~r~~~~~~p~~r~~~~n~~fdgy~ 176 (261)
T KOG3010|consen 125 VLRKDGGLIAVWNYNDD-FVDWPEFDSVMLRLYDSTLPYWRSPLRNLLFDGYK 176 (261)
T ss_pred HcCCCCCEEEEEEccCC-CcCCHHHHHHHHHHhhccCchhhhHHHHhhccccc
Confidence 88888866655544432 222222211 1 1 1236677888888884
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.83 E-value=0.00019 Score=56.15 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=27.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
..+|+|+|||+|..+..++ +++ |..+|+..|....
T Consensus 20 ~~~vldlG~G~G~~~~~l~--------~~~-------~~~~v~~vD~s~~ 54 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAA--------RLV-------PNGRVYAIERNPE 54 (124)
T ss_pred CCEEEEeCCCCCHHHHHHH--------HHC-------CCceEEEEcCCHH
Confidence 4599999999999988777 442 4578999997543
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.83 E-value=6.9e-05 Score=71.08 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=65.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (269)
-+|+|+|||+|..++.+. +++ |..+|+..|.... .+..-...+.. .+ . ...+
T Consensus 198 g~VLDlGCG~G~ls~~la--------~~~-------p~~~v~~vDis~~-------Al~~A~~nl~~-n~--l---~~~~ 249 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLA--------RHS-------PKIRLTLSDVSAA-------ALESSRATLAA-NG--L---EGEV 249 (342)
T ss_pred CeEEEeccCcCHHHHHHH--------HhC-------CCCEEEEEECCHH-------HHHHHHHHHHH-cC--C---CCEE
Confidence 489999999999877666 543 6788999998653 11111111111 11 1 1112
Q ss_pred EeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 024331 132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 211 (269)
Q Consensus 132 ~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 211 (269)
+.++.+.. .++++|+++|+..+||.-. . . ..+..+|++.=++-|+||
T Consensus 250 ---~~~D~~~~--~~~~fDlIvsNPPFH~g~~----------------~-------~-----~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 250 ---FASNVFSD--IKGRFDMIISNPPFHDGIQ----------------T-------S-----LDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred ---EEcccccc--cCCCccEEEECCCccCCcc----------------c-------c-----HHHHHHHHHHHHHhcCcC
Confidence 23555553 3678999999999997211 0 0 134455555556677899
Q ss_pred CeEEEEec
Q 024331 212 GRMVLTFL 219 (269)
Q Consensus 212 G~lv~~~~ 219 (269)
|.|+++..
T Consensus 297 G~L~iVan 304 (342)
T PRK09489 297 GELRIVAN 304 (342)
T ss_pred CEEEEEEe
Confidence 99998753
No 64
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.82 E-value=0.00013 Score=64.53 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=68.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
++.+|+|+|||+|..++.++ +.+ |..+++..|.... .. +..+... ..+. .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~--------~~~-------~~~~v~~iD~~~~----------~~-~~a~~~~~~~~~---~ 137 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALA--------KER-------PDARVTAVDISPE----------AL-AVARKNAARLGL---D 137 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHH--------HHC-------CCCEEEEEECCHH----------HH-HHHHHHHHHcCC---C
Confidence 35699999999998888776 432 4578999997654 11 1111111 0111 1
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccccC---CCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQV---PDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~---P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
+ +.-+.+++.. .++++++|+++|+--.+..+.. +..+.. -++..+.. -......++..|++.=.
T Consensus 138 ~--~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~---------~e~~~~~~-~~~~~~~~~~~~i~~~~ 204 (251)
T TIGR03534 138 N--VTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRF---------HEPRLALF-GGEDGLDFYRRIIAQAP 204 (251)
T ss_pred e--EEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhh---------cCCHHHHc-CCCcHHHHHHHHHHHHH
Confidence 2 2223477766 5688999999995333221111 111000 00000000 00112345666777667
Q ss_pred hhhccCCeEEEEe
Q 024331 206 EELVAEGRMVLTF 218 (269)
Q Consensus 206 ~EL~pGG~lv~~~ 218 (269)
+.|+|||.+++..
T Consensus 205 ~~L~~gG~~~~~~ 217 (251)
T TIGR03534 205 RLLKPGGWLLLEI 217 (251)
T ss_pred HhcccCCEEEEEE
Confidence 7888999999854
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.82 E-value=0.00013 Score=70.09 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=48.9
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (269)
-+|+|+|||+|.-++.+. +++ |+.+|++.|...- .+..-+..+.. .+.. ...-
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~~-------P~~~V~~vD~S~~-------Av~~A~~N~~~-n~~~----~~~~ 282 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DKN-------PQAKVVFVDESPM-------AVASSRLNVET-NMPE----ALDR 282 (378)
T ss_pred CeEEEEeccccHHHHHHH--------HhC-------CCCEEEEEECCHH-------HHHHHHHHHHH-cCcc----cCce
Confidence 489999999998877666 543 7899999998542 12111111111 1110 0001
Q ss_pred EeecCCCccCCCCCCCceeeEeccccccc
Q 024331 132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQW 160 (269)
Q Consensus 132 ~~~vpgSFy~~lfP~~Svd~~~Ss~alHW 160 (269)
+..+.++.+..+ ++.++|+++|+--+|+
T Consensus 283 v~~~~~D~l~~~-~~~~fDlIlsNPPfh~ 310 (378)
T PRK15001 283 CEFMINNALSGV-EPFRFNAVLCNPPFHQ 310 (378)
T ss_pred EEEEEccccccC-CCCCEEEEEECcCccc
Confidence 222335666543 6679999999878887
No 66
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.81 E-value=0.00016 Score=61.48 Aligned_cols=75 Identities=25% Similarity=0.353 Sum_probs=47.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
..-+|+|+|||+|.-++.+. +++ |..+|++.|.-..= +......... .+ . .+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la--------~~~-------~~~~v~~vDi~~~a-------~~~a~~n~~~-n~--~---~~ 82 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALA--------KRG-------PDAKVTAVDINPDA-------LELAKRNAER-NG--L---EN 82 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHH--------HTS-------TCEEEEEEESBHHH-------HHHHHHHHHH-TT--C---TT
T ss_pred cCCeEEEecCChHHHHHHHH--------HhC-------CCCEEEEEcCCHHH-------HHHHHHHHHh-cC--c---cc
Confidence 35789999999999988777 543 67889999986541 1111111111 11 1 12
Q ss_pred eEEeecCCCccCCCCCCCceeeEecc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSS 155 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss 155 (269)
+..+..+.+..+ +++++|+++|+
T Consensus 83 --v~~~~~d~~~~~-~~~~fD~Iv~N 105 (170)
T PF05175_consen 83 --VEVVQSDLFEAL-PDGKFDLIVSN 105 (170)
T ss_dssp --EEEEESSTTTTC-CTTCEEEEEE-
T ss_pred --cccccccccccc-cccceeEEEEc
Confidence 333447777654 48999999994
No 67
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=0.00018 Score=63.93 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=67.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHH-HHHHhcCCCCCCCCc
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQK-ILRKQLGSASGAAGQ 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~-~~~~~~~~~~~~~~~ 129 (269)
..-++++|||||+|= +-| +..|.-.|.+-|=..| +..+.. +.+.....++ .
T Consensus 77 K~~vLEvgcGtG~Nf------------kfy----~~~p~~svt~lDpn~~--------mee~~~ks~~E~k~~~~----~ 128 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANF------------KFY----PWKPINSVTCLDPNEK--------MEEIADKSAAEKKPLQV----E 128 (252)
T ss_pred ccceEEecccCCCCc------------ccc----cCCCCceEEEeCCcHH--------HHHHHHHHHhhccCcce----E
Confidence 467899999999993 222 1236788888886666 333322 2222222222 3
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
.|+.|-+.+.-+ +|+.|+|.+++.+.| ++-.++..+..+| .+-|+
T Consensus 129 ~fvva~ge~l~~--l~d~s~DtVV~TlvL------------------CSve~~~k~L~e~---------------~rlLR 173 (252)
T KOG4300|consen 129 RFVVADGENLPQ--LADGSYDTVVCTLVL------------------CSVEDPVKQLNEV---------------RRLLR 173 (252)
T ss_pred EEEeechhcCcc--cccCCeeeEEEEEEE------------------eccCCHHHHHHHH---------------HHhcC
Confidence 577766644333 599999999995544 2222333344444 56777
Q ss_pred cCCeEEEEecccC
Q 024331 210 AEGRMVLTFLGRK 222 (269)
Q Consensus 210 pGG~lv~~~~g~~ 222 (269)
|||++++.--+..
T Consensus 174 pgG~iifiEHva~ 186 (252)
T KOG4300|consen 174 PGGRIIFIEHVAG 186 (252)
T ss_pred CCcEEEEEecccc
Confidence 9999999876664
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.75 E-value=0.00022 Score=62.44 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=47.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (269)
..+|+|+|||+|..+..+. +.. .+.-+|+..|.-.+ + . +..+++. ..++ ..+
T Consensus 73 ~~~VLDiG~GsG~~~~~la--------~~~------~~~g~V~~iD~~~~--------~--~-~~a~~~l~~~~~--~~~ 125 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA--------EAI------ERRGKVYTVEIVKE--------L--A-IYAAQNIERLGY--WGV 125 (205)
T ss_pred CCEEEEECcCccHHHHHHH--------Hhc------CCCCEEEEEeCCHH--------H--H-HHHHHHHHHcCC--CCc
Confidence 4799999999999998777 432 12357888887665 1 1 1111111 1111 011
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW 160 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW 160 (269)
+. -+-+++..-+.+.+++|.+++..++++
T Consensus 126 v~--~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 126 VE--VYHGDGKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred EE--EEECCcccCCccCCCccEEEEccCcch
Confidence 22 223676665555679999999776654
No 69
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.75 E-value=7.8e-05 Score=67.78 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=84.5
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
..-+|+|+|||+|.-++.+. +++ ++++|...++-.-......+++.. .++ .
T Consensus 44 ~~~~IlDlGaG~G~l~L~la--------~r~-------~~a~I~~VEiq~~~a~~A~~nv~l----------n~l----~ 94 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLA--------QRT-------EKAKIVGVEIQEEAAEMAQRNVAL----------NPL----E 94 (248)
T ss_pred cCCeEEEecCCcCHHHHHHh--------ccC-------CCCcEEEEEeCHHHHHHHHHHHHh----------Ccc----h
Confidence 47899999999999999888 654 347787777766544333333321 111 1
Q ss_pred eEEeecCCCc--cCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 130 CFFTGVPGSF--YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 130 ~f~~~vpgSF--y~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
-.+..+-+++ +...++..++|+++| .|+....++. ..+.+..+..+.+..-++..+++.=++-
T Consensus 95 ~ri~v~~~Di~~~~~~~~~~~fD~Ii~---------NPPyf~~~~~------~~~~~~~~~Ar~e~~~~le~~i~~a~~~ 159 (248)
T COG4123 95 ERIQVIEADIKEFLKALVFASFDLIIC---------NPPYFKQGSR------LNENPLRAIARHEITLDLEDLIRAAAKL 159 (248)
T ss_pred hceeEehhhHHHhhhcccccccCEEEe---------CCCCCCCccc------cCcChhhhhhhhhhcCCHHHHHHHHHHH
Confidence 1222223555 445666669999999 5777764332 1234455666667788899999999999
Q ss_pred hccCCeEEEEe
Q 024331 208 LVAEGRMVLTF 218 (269)
Q Consensus 208 L~pGG~lv~~~ 218 (269)
|||||.+.+..
T Consensus 160 lk~~G~l~~V~ 170 (248)
T COG4123 160 LKPGGRLAFVH 170 (248)
T ss_pred ccCCCEEEEEe
Confidence 99999999875
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.74 E-value=0.00019 Score=66.30 Aligned_cols=123 Identities=18% Similarity=0.207 Sum_probs=66.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (269)
+.+|+|+|||+|..++.+. +++ |..+|+..|+... .. +..+++. ..++ ..+
T Consensus 122 ~~~vLDlG~GsG~i~~~la--------~~~-------~~~~v~avDis~~----------al-~~A~~n~~~~~~--~~~ 173 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACA--------YAF-------PEAEVDAVDISPD----------AL-AVAEINIERHGL--EDR 173 (284)
T ss_pred CCEEEEEeCchhHHHHHHH--------HHC-------CCCEEEEEECCHH----------HH-HHHHHHHHHcCC--CCc
Confidence 4689999999999888777 443 5689999998654 11 1111111 0111 012
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHH----HHHH--HHHHHHHHHHHhh
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVL----TAYY--EQFQRDFSLFLKC 203 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~----~ay~--~Q~~~D~~~FL~~ 203 (269)
+ .-+.+++... +|++++|+++|+ |+.+..+ .+. .. ++++. .|.. .......+.|++.
T Consensus 174 i--~~~~~D~~~~-~~~~~fD~Iv~N---------PPy~~~~--~~~--~l-~~~~~~ep~~al~gg~dGl~~~~~il~~ 236 (284)
T TIGR03533 174 V--TLIQSDLFAA-LPGRKYDLIVSN---------PPYVDAE--DMA--DL-PAEYHHEPELALASGEDGLDLVRRILAE 236 (284)
T ss_pred E--EEEECchhhc-cCCCCccEEEEC---------CCCCCcc--chh--hC-CHhhhcCHHHHhcCCCcHHHHHHHHHHH
Confidence 2 2233676653 477799999994 5443311 000 00 01110 0000 0122344566666
Q ss_pred hhhhhccCCeEEEEe
Q 024331 204 RSEELVAEGRMVLTF 218 (269)
Q Consensus 204 Ra~EL~pGG~lv~~~ 218 (269)
=.+-|+|||++++-+
T Consensus 237 a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 237 AADHLNENGVLVVEV 251 (284)
T ss_pred HHHhcCCCCEEEEEE
Confidence 667788999998754
No 71
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.72 E-value=0.00039 Score=61.10 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..|+.+. +.. .++.+|+..|.-.. + +...++.+. +.+.. .-
T Consensus 77 ~~~~VLDiG~GsG~~a~~la--------~~~------~~~g~V~~vD~~~~----~---~~~A~~~~~-~~g~~----~v 130 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA--------EIV------GRDGLVVSIERIPE----L---AEKAERRLR-KLGLD----NV 130 (215)
T ss_pred CcCEEEEECCCccHHHHHHH--------HHh------CCCCEEEEEeCCHH----H---HHHHHHHHH-HCCCC----Ce
Confidence 35799999999999998777 442 13467888887543 1 111111111 11211 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEecccc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYS 157 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~a 157 (269)
.++. ++....+.+.+++|++++..+
T Consensus 131 ~~~~---~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 131 IVIV---GDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred EEEE---CCcccCCcccCCCCEEEEcCC
Confidence 3333 676665555678999987543
No 72
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.68 E-value=0.00012 Score=72.08 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=35.4
Q ss_pred cCCCCCCCceeeEecccccc-ccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEe
Q 024331 140 YGRLFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTF 218 (269)
Q Consensus 140 y~~lfP~~Svd~~~Ss~alH-WLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~ 218 (269)
...+||++++|++||+-|+. |.+. .| +|. -|+ -|.|+|||+++++-
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~--------~g-~~l-----------------~ev-------dRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPN--------DG-FLL-----------------FEV-------DRVLRPGGYFVLSG 219 (506)
T ss_pred ccccCCccchhhhhcccccccchhc--------cc-cee-----------------ehh-------hhhhccCceEEecC
Confidence 67899999999999999876 7443 22 222 122 45667999999986
Q ss_pred cccC
Q 024331 219 LGRK 222 (269)
Q Consensus 219 ~g~~ 222 (269)
+-..
T Consensus 220 ppv~ 223 (506)
T PF03141_consen 220 PPVY 223 (506)
T ss_pred Cccc
Confidence 5433
No 73
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.68 E-value=0.00038 Score=50.87 Aligned_cols=78 Identities=21% Similarity=0.188 Sum_probs=45.3
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF 132 (269)
Q Consensus 53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~ 132 (269)
+|+|+|||+|..+..++ + .+..+++..|+..+-....-+ .....+.. .-.++
T Consensus 1 ~ildig~G~G~~~~~~~--------~--------~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~----~~~~~ 52 (107)
T cd02440 1 RVLDLGCGTGALALALA--------S--------GPGARVTGVDISPVALELARK--------AAAALLAD----NVEVL 52 (107)
T ss_pred CeEEEcCCccHHHHHHh--------c--------CCCCEEEEEeCCHHHHHHHHH--------HHhccccc----ceEEE
Confidence 58999999999877665 2 134788888976651111000 00111110 11232
Q ss_pred eecCCCccCCCC-CCCceeeEecccccccc
Q 024331 133 TGVPGSFYGRLF-PRNSVHLFHSSYSLQWL 161 (269)
Q Consensus 133 ~~vpgSFy~~lf-P~~Svd~~~Ss~alHWL 161 (269)
. +++..... +.+++|++++...+++.
T Consensus 53 ~---~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 53 K---GDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred E---cChhhhccccCCceEEEEEccceeeh
Confidence 2 45555443 67789999998887774
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.64 E-value=0.00063 Score=59.97 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=47.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+..+|+|+|||+|..|..+. +.. .+..+|+..|.-.. + +...++.++ ..+ + .+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la--------~~~------~~~~~V~~vE~~~~-~------~~~a~~~l~-~~g--~---~~ 128 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA--------EIV------GKSGKVVTIERIPE-L------AEKAKKTLK-KLG--Y---DN 128 (212)
T ss_pred CcCEEEEECCcccHHHHHHH--------Hhc------CCCCEEEEEeCCHH-H------HHHHHHHHH-HcC--C---CC
Confidence 35799999999999997776 332 13467888876443 1 101111111 111 1 12
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSL 158 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~al 158 (269)
+..+-|+....+.+.+.+|++++..+.
T Consensus 129 --v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 129 --VEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred --eEEEECCcccCCCcCCCcCEEEECCCc
Confidence 223347777666778899999986554
No 75
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.63 E-value=0.00038 Score=61.76 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=28.7
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
..-+|+|+|||.|+|++.++ ++ -.+|+..|+...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA--------~~---------G~~V~gvD~S~~ 67 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLA--------EQ---------GHRVLGVELSEI 67 (213)
T ss_pred CCCeEEEeCCCchhHHHHHH--------hC---------CCeEEEEeCCHH
Confidence 34699999999999999888 54 388999998776
No 76
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.61 E-value=0.00058 Score=59.91 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=45.8
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
+..+|+|+|||+|..+..+. ++ ...|+..|...+ +. ...+++. ..... ..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la--------~~---------~~~v~gvD~s~~----------~i-~~a~~~~~~~~~~-~~ 105 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA--------KR---------GAIVKAVDISEQ----------MV-QMARNRAQGRDVA-GN 105 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH--------HC---------CCEEEEEECCHH----------HH-HHHHHHHHhcCCC-Cc
Confidence 46899999999998777665 22 257888887654 21 1122111 01000 01
Q ss_pred ceEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL 161 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL 161 (269)
-.|. .+++... | +++|+++++..++++
T Consensus 106 i~~~---~~d~~~~--~-~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 106 VEFE---VNDLLSL--C-GEFDIVVCMDVLIHY 132 (219)
T ss_pred eEEE---ECChhhC--C-CCcCEEEEhhHHHhC
Confidence 1233 3666553 2 899999998888764
No 77
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.55 E-value=0.00037 Score=59.31 Aligned_cols=123 Identities=13% Similarity=0.073 Sum_probs=66.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (269)
+.+|+|+|||+|..++.++ ++. + +|+..|+... + .+..+++. ..+. +
T Consensus 20 ~~~vLdlG~G~G~~~~~l~--------~~~-------~--~v~~vD~s~~----------~-~~~a~~~~~~~~~----~ 67 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLK--------GKG-------K--CILTTDINPF----------A-VKELRENAKLNNV----G 67 (179)
T ss_pred CCeEEEeCCChhHHHHHHH--------hcC-------C--EEEEEECCHH----------H-HHHHHHHHHHcCC----c
Confidence 4689999999999877666 321 2 7888888654 1 11122111 0111 1
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+..+.++++..+ .+++|+++|+...|..+..+..-. ...+-..+... ......+||+.=.+-|+
T Consensus 68 --~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~l~~~~~~Lk 131 (179)
T TIGR00537 68 --LDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGD--WLDVAIDGGKD----------GRKVIDRFLDELPEILK 131 (179)
T ss_pred --eEEEEccccccc--CCcccEEEECCCCCCCcchhcccc--hhhhhhhcCCc----------hHHHHHHHHHhHHHhhC
Confidence 222346766643 459999999887775543221100 00000000000 11224556665567788
Q ss_pred cCCeEEEEeccc
Q 024331 210 AEGRMVLTFLGR 221 (269)
Q Consensus 210 pGG~lv~~~~g~ 221 (269)
|||.+++...+.
T Consensus 132 ~gG~~~~~~~~~ 143 (179)
T TIGR00537 132 EGGRVQLIQSSL 143 (179)
T ss_pred CCCEEEEEEecc
Confidence 999999977443
No 78
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.54 E-value=0.00052 Score=62.89 Aligned_cols=107 Identities=22% Similarity=0.247 Sum_probs=65.6
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC--c
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG--Q 129 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~--~ 129 (269)
.+|+|+|||+|--|..++ +. -+||...|+..- ..+-++.++-.++.... .
T Consensus 91 ~~ilDvGCGgGLLSepLA--------rl---------ga~V~GID~s~~-----------~V~vA~~h~~~dP~~~~~~~ 142 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLA--------RL---------GAQVTGIDASDD-----------MVEVANEHKKMDPVLEGAIA 142 (282)
T ss_pred ceEEEeccCccccchhhH--------hh---------CCeeEeecccHH-----------HHHHHHHhhhcCchhccccc
Confidence 689999999999998877 43 289999997653 22223222211110001 1
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+.+.-.-.+-.+..- .+|.+.|+ +|.+-+ +|...||.+=.+-|+
T Consensus 143 y~l~~~~~~~E~~~~---~fDaVvcs----------------------------evleHV-----~dp~~~l~~l~~~lk 186 (282)
T KOG1270|consen 143 YRLEYEDTDVEGLTG---KFDAVVCS----------------------------EVLEHV-----KDPQEFLNCLSALLK 186 (282)
T ss_pred eeeehhhcchhhccc---ccceeeeH----------------------------HHHHHH-----hCHHHHHHHHHHHhC
Confidence 111111122222111 17777773 344444 788999999999999
Q ss_pred cCCeEEEEecccC
Q 024331 210 AEGRMVLTFLGRK 222 (269)
Q Consensus 210 pGG~lv~~~~g~~ 222 (269)
|||+|+++++-|.
T Consensus 187 P~G~lfittinrt 199 (282)
T KOG1270|consen 187 PNGRLFITTINRT 199 (282)
T ss_pred CCCceEeeehhhh
Confidence 9999999998774
No 79
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.52 E-value=0.00038 Score=60.79 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=61.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~ 128 (269)
+..+|+|+|||+|..+..+. +. ...++..|+... .. ...+.+.. .+. ..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~--------~~---------~~~v~~iD~s~~----------~~-~~a~~~~~~~~~--~~ 94 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA--------RL---------GANVTGIDASEE----------NI-EVAKLHAKKDPL--LK 94 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH--------hc---------CCeEEEEeCCHH----------HH-HHHHHHHHHcCC--Cc
Confidence 46899999999998776554 21 134888887544 11 11111111 100 00
Q ss_pred ceEEeecCCCccCCCCC-CCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFP-RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP-~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
-.|.. +++...+.+ ++++|+++++.++|+..+ ...+|+.-.+-
T Consensus 95 ~~~~~---~d~~~~~~~~~~~~D~i~~~~~l~~~~~---------------------------------~~~~l~~~~~~ 138 (224)
T TIGR01983 95 IEYRC---TSVEDLAEKGAKSFDVVTCMEVLEHVPD---------------------------------PQAFIRACAQL 138 (224)
T ss_pred eEEEe---CCHHHhhcCCCCCccEEEehhHHHhCCC---------------------------------HHHHHHHHHHh
Confidence 12222 455444443 479999999888887422 12344444556
Q ss_pred hccCCeEEEEeccc
Q 024331 208 LVAEGRMVLTFLGR 221 (269)
Q Consensus 208 L~pGG~lv~~~~g~ 221 (269)
|+|||.++++...+
T Consensus 139 L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 139 LKPGGILFFSTINR 152 (224)
T ss_pred cCCCcEEEEEecCC
Confidence 77999999876543
No 80
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.00051 Score=63.62 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=71.7
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCC
Q 024331 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSAS 124 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~ 124 (269)
.....+|+|+|||-|..++..+ ++| .+.|+..+|..| +... .++ ..|..
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA--------~~y--------~v~V~GvTlS~~----------Q~~~-~~~r~~~~gl~- 121 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAA--------EEY--------GVTVVGVTLSEE----------QLAY-AEKRIAARGLE- 121 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHH--------HHc--------CCEEEEeeCCHH----------HHHH-HHHHHHHcCCC-
Confidence 3457999999999999999888 776 489999999998 3221 222 11221
Q ss_pred CCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331 125 GAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (269)
Q Consensus 125 ~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 204 (269)
.++-+- .-++-. ..+.+|=++|.= +|..-..+-+..|++.=
T Consensus 122 ---~~v~v~--l~d~rd---~~e~fDrIvSvg-------------------------------mfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 122 ---DNVEVR--LQDYRD---FEEPFDRIVSVG-------------------------------MFEHVGKENYDDFFKKV 162 (283)
T ss_pred ---cccEEE--eccccc---cccccceeeehh-------------------------------hHHHhCcccHHHHHHHH
Confidence 122221 112111 122288888822 33333556778888888
Q ss_pred hhhhccCCeEEEEecccCC
Q 024331 205 SEELVAEGRMVLTFLGRKS 223 (269)
Q Consensus 205 a~EL~pGG~lv~~~~g~~~ 223 (269)
.+-|+|||+|++-.++...
T Consensus 163 ~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 163 YALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HhhcCCCceEEEEEecCCC
Confidence 8999999999999888765
No 81
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.49 E-value=0.0006 Score=63.75 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=70.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+||+.|+-++.+. ++ | + -.|+.-| |+-.|..=|+.+..+. |.. ..+
T Consensus 116 gk~VLDIGC~nGY~~frM~--------~~----G---A-~~ViGiD-P~~lf~~QF~~i~~~l-------g~~----~~~ 167 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRML--------GR----G---A-KSVIGID-PSPLFYLQFEAIKHFL-------GQD----PPV 167 (315)
T ss_pred CCEEEEecCCCcHHHHHHh--------hc----C---C-CEEEEEC-CChHHHHHHHHHHHHh-------CCC----ccE
Confidence 4699999999999998777 43 1 2 4678888 6666655555554332 111 234
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
|. +|-..+..+. .+++|++|| =| |.++..+|-...+.. ..-|+|
T Consensus 168 ~~--lplgvE~Lp~-~~~FDtVF~-----------------MG-VLYHrr~Pl~~L~~L---------------k~~L~~ 211 (315)
T PF08003_consen 168 FE--LPLGVEDLPN-LGAFDTVFS-----------------MG-VLYHRRSPLDHLKQL---------------KDSLRP 211 (315)
T ss_pred EE--cCcchhhccc-cCCcCEEEE-----------------ee-ehhccCCHHHHHHHH---------------HHhhCC
Confidence 43 3556677666 789999999 13 334555664433333 456779
Q ss_pred CCeEEEEecccCC
Q 024331 211 EGRMVLTFLGRKS 223 (269)
Q Consensus 211 GG~lv~~~~g~~~ 223 (269)
||.|++=++..+.
T Consensus 212 gGeLvLETlvi~g 224 (315)
T PF08003_consen 212 GGELVLETLVIDG 224 (315)
T ss_pred CCEEEEEEeeecC
Confidence 9999998886654
No 82
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.49 E-value=0.001 Score=58.12 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=44.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||+|..|..+. +.. -+|+..|...+ +.+ ...+.+.+ .+ + .+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la--------~~~---------~~v~~vd~~~~----~~~---~a~~~~~~-~~--~---~~ 127 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA--------HLV---------RRVFSVERIKT----LQW---EAKRRLKQ-LG--L---HN 127 (212)
T ss_pred CCCEEEEECCCccHHHHHHH--------HHh---------CEEEEEeCCHH----HHH---HHHHHHHH-CC--C---Cc
Confidence 45799999999999987544 221 14677776533 111 11111111 11 1 12
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW 160 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW 160 (269)
+..+.+++...+.+.+++|++++..+.++
T Consensus 128 --v~~~~~d~~~~~~~~~~fD~I~~~~~~~~ 156 (212)
T PRK00312 128 --VSVRHGDGWKGWPAYAPFDRILVTAAAPE 156 (212)
T ss_pred --eEEEECCcccCCCcCCCcCEEEEccCchh
Confidence 23344666554445589999998665544
No 83
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.44 E-value=0.00047 Score=59.50 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=46.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|..+..+. +. ...+++..|+... +. ...++ .+ . -
T Consensus 14 ~~~iLDiGcG~G~~~~~l~--------~~--------~~~~~~giD~s~~----------~i-~~a~~-~~--~-----~ 58 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLR--------DE--------KQVRGYGIEIDQD----------GV-LACVA-RG--V-----N 58 (194)
T ss_pred CCEEEEeCCCCCHHHHHHH--------hc--------cCCcEEEEeCCHH----------HH-HHHHH-cC--C-----e
Confidence 4689999999998765544 22 1245677776432 11 11111 11 1 2
Q ss_pred EEeecCCCccC-C-CCCCCceeeEecccccccccc
Q 024331 131 FFTGVPGSFYG-R-LFPRNSVHLFHSSYSLQWLSQ 163 (269)
Q Consensus 131 f~~~vpgSFy~-~-lfP~~Svd~~~Ss~alHWLS~ 163 (269)
++. +++.. . .++++++|+++|+.++||+.+
T Consensus 59 ~~~---~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 59 VIQ---GDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred EEE---EEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 323 55544 2 378899999999999999744
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.44 E-value=0.00062 Score=63.63 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=44.8
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (269)
.+|+|+|||+|..++.++ +.+ |..+|+..|+...= +.......+ ..+.. .+
T Consensus 135 ~~VLDlG~GsG~iai~la--------~~~-------p~~~V~avDis~~a-------l~~A~~n~~-~~~l~----~~-- 185 (307)
T PRK11805 135 TRILDLCTGSGCIAIACA--------YAF-------PDAEVDAVDISPDA-------LAVAEINIE-RHGLE----DR-- 185 (307)
T ss_pred CEEEEEechhhHHHHHHH--------HHC-------CCCEEEEEeCCHHH-------HHHHHHHHH-HhCCC----Cc--
Confidence 689999999999888776 432 56899999986540 111111111 11110 11
Q ss_pred EeecCCCccCCCCCCCceeeEecc
Q 024331 132 FTGVPGSFYGRLFPRNSVHLFHSS 155 (269)
Q Consensus 132 ~~~vpgSFy~~lfP~~Svd~~~Ss 155 (269)
+..+-+++... +|++++|+++|+
T Consensus 186 i~~~~~D~~~~-l~~~~fDlIvsN 208 (307)
T PRK11805 186 VTLIESDLFAA-LPGRRYDLIVSN 208 (307)
T ss_pred EEEEECchhhh-CCCCCccEEEEC
Confidence 22233777653 477799999994
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=97.42 E-value=0.0012 Score=58.27 Aligned_cols=124 Identities=13% Similarity=0.019 Sum_probs=64.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|..++.+. +. +..+|+..|+... . +........ ..+ . +
T Consensus 37 ~~~vLDlGcG~G~~~~~la--------~~--------~~~~v~~vD~s~~---~----l~~a~~n~~-~~~--~----~- 85 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAA--------AA--------GAGSVTAVDISRR---A----VRSARLNAL-LAG--V----D- 85 (223)
T ss_pred CCeEEEecCCHHHHHHHHH--------Hc--------CCCeEEEEECCHH---H----HHHHHHHHH-HhC--C----e-
Confidence 4699999999999877665 21 1137888887654 1 110011011 111 1 1
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC-CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES-NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~-nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+..+-+++.. .++++++|+++++--.+..+... ..+ +....|..+.. ....+..|++.=.+-|+
T Consensus 86 -~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~l~~a~~~Lk 150 (223)
T PRK14967 86 -VDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAGPD-----------GRAVLDRLCDAAPALLA 150 (223)
T ss_pred -eEEEECchhh-hccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCCCc-----------HHHHHHHHHHHHHHhcC
Confidence 2223367765 46888999999954322222111 000 00011111110 12345566665567788
Q ss_pred cCCeEEEEecc
Q 024331 210 AEGRMVLTFLG 220 (269)
Q Consensus 210 pGG~lv~~~~g 220 (269)
|||++++....
T Consensus 151 ~gG~l~~~~~~ 161 (223)
T PRK14967 151 PGGSLLLVQSE 161 (223)
T ss_pred CCcEEEEEEec
Confidence 99999986543
No 86
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.40 E-value=0.00034 Score=63.22 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=64.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
...+|+|+|||-|--|..++ +. -+.|+..|+..- +. +-.+.+.-.. .
T Consensus 59 ~g~~vLDvGCGgG~Lse~mA--------r~---------Ga~VtgiD~se~----------~I-~~Ak~ha~e~-----g 105 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLA--------RL---------GASVTGIDASEK----------PI-EVAKLHALES-----G 105 (243)
T ss_pred CCCeEEEecCCccHhhHHHH--------HC---------CCeeEEecCChH----------HH-HHHHHhhhhc-----c
Confidence 35899999999985555444 32 289999998764 22 2222221110 1
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+.+-=.+..-.+.....+++|++.| ++=|.++|. +. .|+++=++=+|
T Consensus 106 v~i~y~~~~~edl~~~~~~FDvV~c---mEVlEHv~d---------------p~---------------~~~~~c~~lvk 152 (243)
T COG2227 106 VNIDYRQATVEDLASAGGQFDVVTC---MEVLEHVPD---------------PE---------------SFLRACAKLVK 152 (243)
T ss_pred ccccchhhhHHHHHhcCCCccEEEE---hhHHHccCC---------------HH---------------HHHHHHHHHcC
Confidence 1111122444566666799999998 444444553 11 24444466777
Q ss_pred cCCeEEEEecccC
Q 024331 210 AEGRMVLTFLGRK 222 (269)
Q Consensus 210 pGG~lv~~~~g~~ 222 (269)
|||.|+++++-|.
T Consensus 153 P~G~lf~STinrt 165 (243)
T COG2227 153 PGGILFLSTINRT 165 (243)
T ss_pred CCcEEEEeccccC
Confidence 9999999998764
No 87
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.40 E-value=0.001 Score=61.18 Aligned_cols=126 Identities=14% Similarity=0.208 Sum_probs=64.8
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCce
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQC 130 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~~ 130 (269)
.+|+|+|||+|..++.++ ..+ |..+|+..|+... ... ..+++. ..+. ..+
T Consensus 116 ~~vLDlG~GsG~i~l~la--------~~~-------~~~~v~avDis~~----------al~-~a~~n~~~~~~--~~~- 166 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA--------YEF-------PNAEVIAVDISPD----------ALA-VAEENAEKNQL--EHR- 166 (284)
T ss_pred CEEEEEeccHhHHHHHHH--------HHC-------CCCEEEEEECCHH----------HHH-HHHHHHHHcCC--CCc-
Confidence 689999999998888776 432 5678999997654 111 111111 0111 011
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc-e-EEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN-I-FMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~-i-~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
+..+.++++.. +|++++|+++|+ |+.+..+.-. . -...-.|..+... -.-...+.+.+++.=.+-|
T Consensus 167 -v~~~~~d~~~~-~~~~~fDlIvsN---------PPyi~~~~~~~~~~~~~~eP~~AL~g-g~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 167 -VEFIQSNLFEP-LAGQKIDIIVSN---------PPYIDEEDLADLPNVVRFEPLLALVG-GDDGLNILRQIIELAPDYL 234 (284)
T ss_pred -EEEEECchhcc-CcCCCccEEEEC---------CCCCCcchhhcCCcccccCcHHHhcC-CCcHHHHHHHHHHHHHHhc
Confidence 22233677663 466689999994 3333210000 0 0000011100000 0012345566666666677
Q ss_pred ccCCeEEEEe
Q 024331 209 VAEGRMVLTF 218 (269)
Q Consensus 209 ~pGG~lv~~~ 218 (269)
+|||.+++-+
T Consensus 235 ~~gG~l~~e~ 244 (284)
T TIGR00536 235 KPNGFLVCEI 244 (284)
T ss_pred cCCCEEEEEE
Confidence 8999988755
No 88
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.37 E-value=0.00056 Score=62.73 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=41.1
Q ss_pred CCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEE
Q 024331 137 GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL 216 (269)
Q Consensus 137 gSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~ 216 (269)
-++-+.+++++|+|+++...||+= .||..|++.=.|.|+|||.+.+
T Consensus 217 cDm~~vPl~d~svDvaV~CLSLMg----------------------------------tn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 217 CDMRNVPLEDESVDVAVFCLSLMG----------------------------------TNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred ccccCCcCccCcccEEEeeHhhhc----------------------------------ccHHHHHHHHHHHhccCceEEE
Confidence 366778899999999988555532 4778888888899999999999
Q ss_pred Eeccc
Q 024331 217 TFLGR 221 (269)
Q Consensus 217 ~~~g~ 221 (269)
.-.-.
T Consensus 263 AEv~S 267 (325)
T KOG3045|consen 263 AEVKS 267 (325)
T ss_pred Eehhh
Confidence 87644
No 89
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.34 E-value=0.0015 Score=60.24 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=24.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
..+|+|+|||+|..++.+. +. ..-+|+..|+...
T Consensus 160 g~~VLDvGcGsG~lai~aa--------~~--------g~~~V~avDid~~ 193 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAAL--------KL--------GAAKVVGIDIDPL 193 (288)
T ss_pred CCEEEEeCCChhHHHHHHH--------Hc--------CCCeEEEEECCHH
Confidence 4799999999998776543 22 1247888887765
No 90
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.29 E-value=0.0025 Score=55.70 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=44.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
+..+|+|+|||+|..+..++ +. ..+|+..|+..+ +.. ..++.. ..+.. ..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~--------~~---------~~~v~~~D~s~~----------~i~-~a~~~~~~~~~~-~~ 113 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA--------RR---------GAKVVASDISPQ----------MVE-EARERAPEAGLA-GN 113 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH--------Hc---------CCEEEEEECCHH----------HHH-HHHHHHHhcCCc-cC
Confidence 45799999999999877665 32 145899998665 211 111111 01000 01
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW 160 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW 160 (269)
-.|.. +++ ..+++++|+++++..+|+
T Consensus 114 i~~~~---~d~---~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 114 ITFEV---GDL---ESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred cEEEE---cCc---hhccCCcCEEEEcchhhc
Confidence 12333 443 235689999999998855
No 91
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.29 E-value=0.0015 Score=56.14 Aligned_cols=107 Identities=20% Similarity=0.166 Sum_probs=61.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+.-+|+|+|||+|..+..+. +++ .+..+|+..|+...- . . . +-
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~--------~~~------~~~~~v~~vDis~~~---------~--------~-~-----~i 74 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAV--------EQV------GGKGRVIAVDLQPMK---------P--------I-E-----NV 74 (188)
T ss_pred CCCEEEEecCCCCHHHHHHH--------HHh------CCCceEEEEeccccc---------c--------C-C-----Cc
Confidence 45799999999998777666 432 123568888875530 0 0 0 11
Q ss_pred eEEeecCCCccCC--------CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 024331 130 CFFTGVPGSFYGR--------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL 201 (269)
Q Consensus 130 ~f~~~vpgSFy~~--------lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 201 (269)
.++. +++.+. .+|.+++|++++..+.|- +-.+. + . ... ...+...+|
T Consensus 75 ~~~~---~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~-~g~~~--------~------~-----~~~--~~~~~~~~l 129 (188)
T TIGR00438 75 DFIR---GDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI-SGYWD--------I------D-----HLR--SIDLVELAL 129 (188)
T ss_pred eEEE---eeCCChhHHHHHHHHhCCCCccEEEcCCCCCC-CCCcc--------c------c-----HHH--HHHHHHHHH
Confidence 2332 344332 367889999999655321 00000 0 0 001 113455666
Q ss_pred hhhhhhhccCCeEEEEe
Q 024331 202 KCRSEELVAEGRMVLTF 218 (269)
Q Consensus 202 ~~Ra~EL~pGG~lv~~~ 218 (269)
+.=.+-|+|||++++..
T Consensus 130 ~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 130 DIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHccCCCEEEEEE
Confidence 66677788999999965
No 92
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.28 E-value=0.01 Score=52.64 Aligned_cols=172 Identities=11% Similarity=0.027 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCce-EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHh
Q 024331 30 SIAKPITEEAMTKLFCSTSPTKV-AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRS 108 (269)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~-~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~ 108 (269)
++-++-|.+++++.+. ..- +|+++|||||--+...+ +++ |.++--=+|...+-+.++-.
T Consensus 8 eRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA--------~~l-------P~l~WqPSD~~~~~~~sI~a- 67 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFA--------QAL-------PHLTWQPSDPDDNLRPSIRA- 67 (204)
T ss_pred hhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHH--------HHC-------CCCEEcCCCCChHHHhhHHH-
Confidence 3334444445555432 222 79999999998877776 543 77888889998884433222
Q ss_pred hHHHHHHHHHhcCC-CCCCCCceEEeecCCCccC----CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCH
Q 024331 109 LASFQKILRKQLGS-ASGAAGQCFFTGVPGSFYG----RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPP 183 (269)
Q Consensus 109 l~~~~~~~~~~~~~-~~~~~~~~f~~~vpgSFy~----~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~ 183 (269)
+.++.+. +. .+++.+= |...-.. -.++..++|.++|.+.+|-.+- +
T Consensus 68 -------~~~~~~~~Nv--~~P~~lD-v~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~-------------------~ 118 (204)
T PF06080_consen 68 -------WIAEAGLPNV--RPPLALD-VSAPPWPWELPAPLSPESFDAIFCINMLHISPW-------------------S 118 (204)
T ss_pred -------HHHhcCCccc--CCCeEee-cCCCCCccccccccCCCCcceeeehhHHHhcCH-------------------H
Confidence 2222221 11 0222221 1111011 1236789999999999997322 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHH----------H--HHHHHHHHHHHHccCc
Q 024331 184 CVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYI----------W--ELLATALNNMVSEVTK 251 (269)
Q Consensus 184 ~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~----------~--~~l~~~l~~mv~eG~i 251 (269)
.+ ..+++.=++-|+|||+|++--+=...+..++..+..| | ..++++-.--.+.|+
T Consensus 119 ~~------------~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL- 185 (204)
T PF06080_consen 119 AV------------EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL- 185 (204)
T ss_pred HH------------HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC-
Confidence 11 2233334778889999988755333332322222112 1 235655555556688
Q ss_pred ccccccceeccccc
Q 024331 252 SFLLLIVFNQLNYK 265 (269)
Q Consensus 252 ~~~~~d~FnlP~~~ 265 (269)
+..+...||..+
T Consensus 186 --~l~~~~~MPANN 197 (204)
T PF06080_consen 186 --ELEEDIDMPANN 197 (204)
T ss_pred --ccCcccccCCCC
Confidence 566677788765
No 93
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.28 E-value=0.0015 Score=63.59 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=45.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (269)
..+|+|+|||+|..++.+. +. .|..+|+..|+... +.. ..+++. ..+. +
T Consensus 252 ~~rVLDLGcGSG~IaiaLA--------~~-------~p~a~VtAVDiS~~----------ALe-~AreNa~~~g~----r 301 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVA--------LE-------RPDAFVRASDISPP----------ALE-TARKNAADLGA----R 301 (423)
T ss_pred CCEEEEEeChhhHHHHHHH--------Hh-------CCCCEEEEEECCHH----------HHH-HHHHHHHHcCC----c
Confidence 3589999999999988776 33 25688999998654 211 122111 1111 1
Q ss_pred eEEeecCCCccCCCCC-CCceeeEecc
Q 024331 130 CFFTGVPGSFYGRLFP-RNSVHLFHSS 155 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP-~~Svd~~~Ss 155 (269)
+..+-+++....+| .+++|+++|+
T Consensus 302 --V~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 302 --VEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred --EEEEEcchhccccccCCCccEEEEC
Confidence 22233787765555 4689999994
No 94
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.27 E-value=0.0033 Score=55.99 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
..|.|.+.+..+. .++.-+|+|.|||.|+|++.++ ++ -.+|+..|+...
T Consensus 22 p~~~L~~~~~~~~---~~~~~rvL~~gCG~G~da~~LA--------~~---------G~~V~avD~s~~ 70 (218)
T PRK13255 22 VNPLLQKYWPALA---LPAGSRVLVPLCGKSLDMLWLA--------EQ---------GHEVLGVELSEL 70 (218)
T ss_pred CCHHHHHHHHhhC---CCCCCeEEEeCCCChHhHHHHH--------hC---------CCeEEEEccCHH
Confidence 4455555444321 2234699999999999999888 43 378999998776
No 95
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.25 E-value=0.001 Score=66.27 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=45.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
+.+|+|+|||+|..++.++ ... |..+|+..|+... . +........ ..+.. ..
T Consensus 139 ~~~VLDlG~GsG~iai~la--------~~~-------p~~~v~avDis~~-a------l~~A~~N~~-~~~l~----~~- 190 (506)
T PRK01544 139 FLNILELGTGSGCIAISLL--------CEL-------PNANVIATDISLD-A------IEVAKSNAI-KYEVT----DR- 190 (506)
T ss_pred CCEEEEccCchhHHHHHHH--------HHC-------CCCeEEEEECCHH-H------HHHHHHHHH-HcCCc----cc-
Confidence 4689999999999988776 432 5689999998543 1 111111111 11110 11
Q ss_pred EEeecCCCccCCCCCCCceeeEecc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSS 155 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss 155 (269)
+..+-+++... ++++++|+++|+
T Consensus 191 -v~~~~~D~~~~-~~~~~fDlIvsN 213 (506)
T PRK01544 191 -IQIIHSNWFEN-IEKQKFDFIVSN 213 (506)
T ss_pred -eeeeecchhhh-CcCCCccEEEEC
Confidence 22234776653 467799999995
No 96
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.23 E-value=0.001 Score=58.70 Aligned_cols=105 Identities=13% Similarity=0.130 Sum_probs=59.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
...+|+|+|||+|..+..+. +. ..+++..|+..+-- ...+.+. ..+. .
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~iD~s~~~~-----------~~a~~~~~~~~~---~ 96 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA--------RL---------GADVTGIDASEENI-----------EVARLHALESGL---K 96 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH--------Hc---------CCeEEEEcCCHHHH-----------HHHHHHHHHcCC---c
Confidence 35789999999998765444 22 14688888865511 1111111 0111 1
Q ss_pred ceEEeecCCCccCCC-CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 129 QCFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 129 ~~f~~~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
--+.. +++...+ .+++.+|+++++..+++... ...+|+.-.+-
T Consensus 97 ~~~~~---~~~~~~~~~~~~~fD~Ii~~~~l~~~~~---------------------------------~~~~l~~~~~~ 140 (233)
T PRK05134 97 IDYRQ---TTAEELAAEHPGQFDVVTCMEMLEHVPD---------------------------------PASFVRACAKL 140 (233)
T ss_pred eEEEe---cCHHHhhhhcCCCccEEEEhhHhhccCC---------------------------------HHHHHHHHHHH
Confidence 12222 3333322 35689999999888776421 11233333555
Q ss_pred hccCCeEEEEeccc
Q 024331 208 LVAEGRMVLTFLGR 221 (269)
Q Consensus 208 L~pGG~lv~~~~g~ 221 (269)
|+|||+++++.+.+
T Consensus 141 L~~gG~l~v~~~~~ 154 (233)
T PRK05134 141 VKPGGLVFFSTLNR 154 (233)
T ss_pred cCCCcEEEEEecCC
Confidence 66999999987654
No 97
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.21 E-value=0.0013 Score=60.47 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=60.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
...+|+|+|||-|..++.++ +++ .++|....+..+ .. +..+++. ..+. ..
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a--------~~~--------g~~v~gitlS~~----------Q~-~~a~~~~~~~gl--~~ 112 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAA--------ERY--------GCHVTGITLSEE----------QA-EYARERIREAGL--ED 112 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHH--------HHH----------EEEEEES-HH----------HH-HHHHHHHHCSTS--SS
T ss_pred CCCEEEEeCCCccHHHHHHH--------HHc--------CcEEEEEECCHH----------HH-HHHHHHHHhcCC--CC
Confidence 45799999999999999888 765 277888887665 21 1122211 1111 12
Q ss_pred ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
.+-+. -.+|.+ ++. ++|-++|.-++.-+ ..+++..|++.=.+-|
T Consensus 113 ~v~v~--~~D~~~--~~~-~fD~IvSi~~~Ehv-------------------------------g~~~~~~~f~~~~~~L 156 (273)
T PF02353_consen 113 RVEVR--LQDYRD--LPG-KFDRIVSIEMFEHV-------------------------------GRKNYPAFFRKISRLL 156 (273)
T ss_dssp TEEEE--ES-GGG------S-SEEEEESEGGGT-------------------------------CGGGHHHHHHHHHHHS
T ss_pred ceEEE--Eeeccc--cCC-CCCEEEEEechhhc-------------------------------ChhHHHHHHHHHHHhc
Confidence 23332 256654 233 99999995444332 1134555566556777
Q ss_pred ccCCeEEEEecccCC
Q 024331 209 VAEGRMVLTFLGRKS 223 (269)
Q Consensus 209 ~pGG~lv~~~~g~~~ 223 (269)
+|||++++..++...
T Consensus 157 kpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 157 KPGGRLVLQTITHRD 171 (273)
T ss_dssp ETTEEEEEEEEEE--
T ss_pred CCCcEEEEEeccccc
Confidence 899999998887643
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.21 E-value=0.0013 Score=59.23 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=27.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
+..+|+|+|||+|..++.++ +.. |..+++..|....
T Consensus 108 ~~~~vLDiG~GsG~~~~~la--------~~~-------~~~~v~~iDis~~ 143 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALA--------KER-------PDAEVTAVDISPE 143 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------HHC-------CCCEEEEEECCHH
Confidence 45799999999999888776 332 4678999997654
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.19 E-value=0.0021 Score=62.51 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=72.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|.-|+.++ +.. +..+|+..|...+= +....+.+++ .| . .+
T Consensus 239 g~~VLDlcag~G~kt~~la--------~~~-------~~~~v~a~D~~~~~-------l~~~~~n~~r-~g--~----~~ 289 (426)
T TIGR00563 239 EETILDACAAPGGKTTHIL--------ELA-------PQAQVVALDIHEHR-------LKRVYENLKR-LG--L----TI 289 (426)
T ss_pred CCeEEEeCCCccHHHHHHH--------HHc-------CCCeEEEEeCCHHH-------HHHHHHHHHH-cC--C----Ce
Confidence 4699999999999999877 442 24689999986651 1111111111 12 2 23
Q ss_pred EEeecCCCccCCCC--CCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 131 FFTGVPGSFYGRLF--PRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 131 f~~~vpgSFy~~lf--P~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
.+..+.++.....+ +.+++|.++. .+++.-+.+.|+... . .++ ...+. ..+.-..+|+.=+
T Consensus 290 ~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~--------~-~~~-~~~~~----l~~lQ~~lL~~a~ 355 (426)
T TIGR00563 290 KAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKW--------L-RKP-RDIAE----LAELQSEILDAIW 355 (426)
T ss_pred EEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhh--------c-CCH-HHHHH----HHHHHHHHHHHHH
Confidence 33334455443333 6788999986 233333334443211 0 111 11122 2333455665556
Q ss_pred hhhccCCeEEEEecccC
Q 024331 206 EELVAEGRMVLTFLGRK 222 (269)
Q Consensus 206 ~EL~pGG~lv~~~~g~~ 222 (269)
+-|+|||+|+.++....
T Consensus 356 ~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 356 PLLKTGGTLVYATCSVL 372 (426)
T ss_pred HhcCCCcEEEEEeCCCC
Confidence 67889999999998775
No 100
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.16 E-value=0.0031 Score=57.25 Aligned_cols=149 Identities=14% Similarity=0.219 Sum_probs=83.6
Q ss_pred HHHhcHHHHHHHHH--------HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCc
Q 024331 18 YASNSLVQEKVISI--------AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPE 89 (269)
Q Consensus 18 Y~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~ 89 (269)
|.+++..+....-. -..+|....-++..-....+.+|+.+|||.|...+.++ +. .+.|.
T Consensus 31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll--------~~-----~~n~~ 97 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLL--------KT-----SPNNR 97 (264)
T ss_pred hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhh--------hc-----CCCCC
Confidence 55555544444322 45677776666654332334599999999997777666 43 24456
Q ss_pred ceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCC
Q 024331 90 FQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLE 169 (269)
Q Consensus 90 ~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~ 169 (269)
+.||+.|...+ . .+-++++.+... ..-..|+.-.-++=-...++.+|+|++.-.+. ||-+|+.
T Consensus 98 l~v~acDfsp~----------A-i~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pe-- 160 (264)
T KOG2361|consen 98 LKVYACDFSPR----------A-IELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPE-- 160 (264)
T ss_pred eEEEEcCCChH----------H-HHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEE---EeccChH--
Confidence 99999998887 1 111222221110 00123444333333567778889998876333 3333331
Q ss_pred CCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 170 SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 170 ~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
. -.++.+.+.+.| ||||.|++--.|+.
T Consensus 161 ------------------k-~~~a~~nl~~ll-------KPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 161 ------------------K-MQSVIKNLRTLL-------KPGGSLLFRDYGRY 187 (264)
T ss_pred ------------------H-HHHHHHHHHHHh-------CCCcEEEEeecccc
Confidence 1 122344454444 59999999866664
No 101
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.14 E-value=0.0035 Score=61.01 Aligned_cols=127 Identities=15% Similarity=0.154 Sum_probs=68.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|.-|+.++ ++. +...|+..|+...= +...++.+. +.| . ...
T Consensus 245 g~~VLDlgaG~G~~t~~la--------~~~-------~~~~v~a~D~s~~~-------l~~~~~n~~-~~g--~---~~~ 296 (427)
T PRK10901 245 GERVLDACAAPGGKTAHIL--------ELA-------PQAQVVALDIDAQR-------LERVRENLQ-RLG--L---KAT 296 (427)
T ss_pred CCEEEEeCCCCChHHHHHH--------HHc-------CCCEEEEEeCCHHH-------HHHHHHHHH-HcC--C---CeE
Confidence 4689999999999998777 442 23678999876651 111111111 111 1 112
Q ss_pred EEeecCCCccCC--CCCCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 131 FFTGVPGSFYGR--LFPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 131 f~~~vpgSFy~~--lfP~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
+ +.++.... .++++++|.+++ .+...-+.+-|... |. . .++-.+ .+.+....+|+.=.
T Consensus 297 ~---~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~-------~~-~--~~~~l~----~l~~~q~~iL~~a~ 359 (427)
T PRK10901 297 V---IVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIK-------WL-R--RPEDIA----ALAALQSEILDALW 359 (427)
T ss_pred E---EEcCcccchhhcccCCCCEEEECCCCCcccccccCcccc-------cc-C--CHHHHH----HHHHHHHHHHHHHH
Confidence 2 33555432 256788999995 11111112222211 10 0 111111 23344556676666
Q ss_pred hhhccCCeEEEEecccC
Q 024331 206 EELVAEGRMVLTFLGRK 222 (269)
Q Consensus 206 ~EL~pGG~lv~~~~g~~ 222 (269)
+-|+|||+|+.++....
T Consensus 360 ~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 360 PLLKPGGTLLYATCSIL 376 (427)
T ss_pred HhcCCCCEEEEEeCCCC
Confidence 78889999999987554
No 102
>PRK14968 putative methyltransferase; Provisional
Probab=97.01 E-value=0.0051 Score=51.81 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=63.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|..++.+. ++ ..+|+..|...+ . .... .+.+.. .+..- ..-.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~--------~~---------~~~v~~~D~s~~-~---~~~a---~~~~~~-~~~~~--~~~~ 76 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAA--------KN---------GKKVVGVDINPY-A---VECA---KCNAKL-NNIRN--NGVE 76 (188)
T ss_pred CCEEEEEccccCHHHHHHH--------hh---------cceEEEEECCHH-H---HHHH---HHHHHH-cCCCC--cceE
Confidence 4689999999999877666 22 257888886644 1 1111 111111 11100 0012
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC-CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES-NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~-nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+ +.+++... ++++++|+++++..+.+-. |..... -....+..+.. .......|++.=.+-|+
T Consensus 77 ~---~~~d~~~~-~~~~~~d~vi~n~p~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~~~~~Lk 139 (188)
T PRK14968 77 V---IRSDLFEP-FRGDKFDVILFNPPYLPTE--EEEEWDDWLNYALSGGKD-----------GREVIDRFLDEVGRYLK 139 (188)
T ss_pred E---Eecccccc-ccccCceEEEECCCcCCCC--chhhhhhhhhhhhccCcC-----------hHHHHHHHHHHHHHhcC
Confidence 2 33666664 4666999999854432211 110000 00000000000 12234567777778888
Q ss_pred cCCeEEEEec
Q 024331 210 AEGRMVLTFL 219 (269)
Q Consensus 210 pGG~lv~~~~ 219 (269)
|||.+++...
T Consensus 140 ~gG~~~~~~~ 149 (188)
T PRK14968 140 PGGRILLLQS 149 (188)
T ss_pred CCeEEEEEEc
Confidence 9999988763
No 103
>PLN03075 nicotianamine synthase; Provisional
Probab=96.99 E-value=0.01 Score=55.37 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=60.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
.+-+|||+|||.|+-|..++ ... -.|.-++..-|.-.- -+.+-+.+ +.+..+..- +-
T Consensus 123 ~p~~VldIGcGpgpltaiil--------aa~-----~~p~~~~~giD~d~~-ai~~Ar~~------~~~~~gL~~---rV 179 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVL--------AKH-----HLPTTSFHNFDIDPS-ANDVARRL------VSSDPDLSK---RM 179 (296)
T ss_pred CCCEEEEECCCCcHHHHHHH--------HHh-----cCCCCEEEEEeCCHH-HHHHHHHH------hhhccCccC---Cc
Confidence 57899999999998766555 211 126678888887552 21111111 111111100 12
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
.|.. ++--+..-+.+.+|++|+. ++|-.++- .+..+.+.. ++-|+
T Consensus 180 ~F~~---~Da~~~~~~l~~FDlVF~~-ALi~~dk~----------------~k~~vL~~l---------------~~~Lk 224 (296)
T PLN03075 180 FFHT---ADVMDVTESLKEYDVVFLA-ALVGMDKE----------------EKVKVIEHL---------------GKHMA 224 (296)
T ss_pred EEEE---CchhhcccccCCcCEEEEe-cccccccc----------------cHHHHHHHH---------------HHhcC
Confidence 4544 4433321124789999999 76643321 122233333 56678
Q ss_pred cCCeEEEEe
Q 024331 210 AEGRMVLTF 218 (269)
Q Consensus 210 pGG~lv~~~ 218 (269)
|||++++-.
T Consensus 225 PGG~Lvlr~ 233 (296)
T PLN03075 225 PGALLMLRS 233 (296)
T ss_pred CCcEEEEec
Confidence 999999976
No 104
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.94 E-value=0.0033 Score=61.40 Aligned_cols=130 Identities=10% Similarity=0.051 Sum_probs=73.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|.-|+.++ +.. .+..+|+..|+..+ .+....+.+. +.| . .++
T Consensus 238 g~~VLD~cagpGgkt~~la--------~~~------~~~g~V~a~Dis~~-------rl~~~~~n~~-r~g--~---~~v 290 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIA--------ELM------KDQGKILAVDISRE-------KIQLVEKHAK-RLK--L---SSI 290 (431)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHc------CCCCEEEEEECCHH-------HHHHHHHHHH-HcC--C---CeE
Confidence 4689999999999999877 442 13579999998765 1111111111 112 1 122
Q ss_pred EEeecCCCccCCC-CCCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331 131 FFTGVPGSFYGRL-FPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (269)
Q Consensus 131 f~~~vpgSFy~~l-fP~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 206 (269)
..+-++..... +.++++|.++. .+.+..+.+.|.... .. +++ -..+..+.-...|..=++
T Consensus 291 --~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~---------~~-~~~----~~~~l~~~Q~~iL~~a~~ 354 (431)
T PRK14903 291 --EIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLR---------RV-NKE----DFKKLSEIQLRIVSQAWK 354 (431)
T ss_pred --EEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHH---------hC-CHH----HHHHHHHHHHHHHHHHHH
Confidence 22224443322 34678999986 233444444443211 00 111 112234455666766677
Q ss_pred hhccCCeEEEEecccCC
Q 024331 207 ELVAEGRMVLTFLGRKS 223 (269)
Q Consensus 207 EL~pGG~lv~~~~g~~~ 223 (269)
-|+|||.|+.++.....
T Consensus 355 ~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 355 LLEKGGILLYSTCTVTK 371 (431)
T ss_pred hcCCCCEEEEEECCCCh
Confidence 88899999999988753
No 105
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.92 E-value=0.0071 Score=58.99 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=70.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|..|+.+. +.. .+..+|+..|.... .+....+.++ +.| + .+
T Consensus 253 g~~VLDl~ag~G~kt~~la--------~~~------~~~g~v~a~D~~~~-------rl~~~~~n~~-r~g--~---~~- 304 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIA--------ELM------GDQGEIWAVDRSAS-------RLKKLQENAQ-RLG--L---KS- 304 (434)
T ss_pred cCEEEEeCCCCchhHHHHH--------HHh------CCCceEEEEcCCHH-------HHHHHHHHHH-HcC--C---Ce-
Confidence 4689999999999998877 442 13468999998544 1111111111 112 2 12
Q ss_pred EEeecCCCccCCC----CCCCceeeEeccccccccccCCCCCCCCCcceEEc-----CCCCHHHHHHHHHHHHHHHHHHH
Q 024331 131 FFTGVPGSFYGRL----FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMA-----STSPPCVLTAYYEQFQRDFSLFL 201 (269)
Q Consensus 131 f~~~vpgSFy~~l----fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~-----~~s~~~v~~ay~~Q~~~D~~~FL 201 (269)
+..+.++..... ++++++|.++. +.|+.=. |.+.-. ..++ ... ....+.-..+|
T Consensus 305 -v~~~~~D~~~~~~~~~~~~~~fD~Vl~--------DaPCSg~---G~~~r~p~~~~~~~~-~~~----~~l~~~Q~~iL 367 (434)
T PRK14901 305 -IKILAADSRNLLELKPQWRGYFDRILL--------DAPCSGL---GTLHRHPDARWRQTP-EKI----QELAPLQAELL 367 (434)
T ss_pred -EEEEeCChhhcccccccccccCCEEEE--------eCCCCcc---cccccCcchhhhCCH-HHH----HHHHHHHHHHH
Confidence 222335554433 45788999986 4454211 111100 0011 111 12334446677
Q ss_pred hhhhhhhccCCeEEEEecccC
Q 024331 202 KCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 202 ~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
..=++-|||||+|+.++....
T Consensus 368 ~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 368 ESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred HHHHHhcCCCCEEEEEeCCCC
Confidence 766778889999999886654
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=96.91 E-value=0.0031 Score=58.34 Aligned_cols=117 Identities=11% Similarity=0.108 Sum_probs=70.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
.-+|+|+|||+|..++.+. ++. +..+|+..|+... +. +..++.. . .--
T Consensus 65 ~grVLDLGcGsGilsl~la--------~r~-------~~~~V~gVDisp~----------al-~~Ar~n~-~-----~v~ 112 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCML--------HRC-------KPEKIVCVELNPE----------FA-RIGKRLL-P-----EAE 112 (279)
T ss_pred CCeEEEcCCCCCHHHHHHH--------HhC-------CCCEEEEEECCHH----------HH-HHHHHhC-c-----CCE
Confidence 3589999999998777655 331 3478999998653 11 1111111 0 112
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHH----HHH--HHHHHHhhh
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQ----FQR--DFSLFLKCR 204 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q----~~~--D~~~FL~~R 204 (269)
++. +++.... ++.++|+++|+-.++++..... .+.++.+ ..+ .+..||+..
T Consensus 113 ~v~---~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~-------------------~~~~~~~GG~~g~~~l~~~~~l~~v 169 (279)
T PHA03411 113 WIT---SDVFEFE-SNEKFDVVISNPPFGKINTTDT-------------------KDVFEYTGGEFEFKVMTLGQKFADV 169 (279)
T ss_pred EEE---Cchhhhc-ccCCCcEEEEcCCccccCchhh-------------------hhhhhhccCccccccccHHHHHhhh
Confidence 333 6776543 4578999999888877532110 0111110 011 257888888
Q ss_pred hhhhccCCeEEEEecccC
Q 024331 205 SEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 205 a~EL~pGG~lv~~~~g~~ 222 (269)
+.-|+|+|...+.+-+++
T Consensus 170 ~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 170 GYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred HheecCCceEEEEEeccc
Confidence 889999998888876654
No 107
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.79 E-value=0.002 Score=54.20 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=40.4
Q ss_pred CCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEE
Q 024331 136 PGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMV 215 (269)
Q Consensus 136 pgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 215 (269)
-|+..+.+++++++|++++++++||+.+ +..+.++. .+.|||||.++
T Consensus 32 ~~d~~~lp~~~~~fD~v~~~~~l~~~~d------------------~~~~l~ei---------------~rvLkpGG~l~ 78 (160)
T PLN02232 32 EGDAIDLPFDDCEFDAVTMGYGLRNVVD------------------RLRAMKEM---------------YRVLKPGSRVS 78 (160)
T ss_pred EechhhCCCCCCCeeEEEecchhhcCCC------------------HHHHHHHH---------------HHHcCcCeEEE
Confidence 3788999999999999999999999632 11122222 56677999999
Q ss_pred EEecccC
Q 024331 216 LTFLGRK 222 (269)
Q Consensus 216 ~~~~g~~ 222 (269)
+..++..
T Consensus 79 i~d~~~~ 85 (160)
T PLN02232 79 ILDFNKS 85 (160)
T ss_pred EEECCCC
Confidence 9877654
No 108
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.78 E-value=0.0027 Score=49.47 Aligned_cols=113 Identities=21% Similarity=0.212 Sum_probs=60.7
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (269)
.+|+|.|||+|..++.+. +.. ..+++..|+-.- .-.+. ...+. ..+... +--+
T Consensus 2 ~~vlD~~~G~G~~~~~~~--------~~~--------~~~~~gvdi~~~-----~~~~a--~~~~~-~~~~~~---~~~~ 54 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAAL--------RRG--------AARVTGVDIDPE-----AVELA--RRNLP-RNGLDD---RVEV 54 (117)
T ss_dssp EEEEEETSTTCHHHHHHH--------HHC--------TCEEEEEESSHH-----HHHHH--HHHCH-HCTTTT---TEEE
T ss_pred CEEEEcCcchHHHHHHHH--------HHC--------CCeEEEEEECHH-----HHHHH--HHHHH-HccCCc---eEEE
Confidence 589999999998877666 331 377888876432 11110 00011 111100 1233
Q ss_pred EeecCCCccCCC--CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 132 FTGVPGSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 132 ~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
+. +++.... ++++++|+++++ |+.... . ... +. -.++...|++.=.+-|+
T Consensus 55 ~~---~D~~~~~~~~~~~~~D~Iv~n---------pP~~~~-------~-~~~-----~~---~~~~~~~~~~~~~~~L~ 106 (117)
T PF13659_consen 55 IV---GDARDLPEPLPDGKFDLIVTN---------PPYGPR-------S-GDK-----AA---LRRLYSRFLEAAARLLK 106 (117)
T ss_dssp EE---SHHHHHHHTCTTT-EEEEEE-----------STTSB-------T-T------------GGCHHHHHHHHHHHHEE
T ss_pred EE---CchhhchhhccCceeEEEEEC---------CCCccc-------c-ccc-----hh---hHHHHHHHHHHHHHHcC
Confidence 33 6665544 899999999993 222210 0 000 00 11144566666677788
Q ss_pred cCCeEEEEec
Q 024331 210 AEGRMVLTFL 219 (269)
Q Consensus 210 pGG~lv~~~~ 219 (269)
|||.+++.+.
T Consensus 107 ~gG~~~~~~~ 116 (117)
T PF13659_consen 107 PGGVLVFITP 116 (117)
T ss_dssp EEEEEEEEEE
T ss_pred CCeEEEEEeC
Confidence 9999999864
No 109
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.73 E-value=0.011 Score=55.57 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=46.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHh---cCC-CCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---LGS-ASG 125 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~---~~~-~~~ 125 (269)
+..+|+|+|||+|..++.+. ++ ..+|+..|+..+ ++.. .+++ .+. +.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la--------~~---------g~~V~gvD~S~~----------ml~~-A~~~~~~~~~~~~~ 195 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLA--------LE---------GAIVSASDISAA----------MVAE-AERRAKEALAALPP 195 (315)
T ss_pred CCCEEEEecCCCCHHHHHHH--------HC---------CCEEEEEECCHH----------HHHH-HHHHHHhccccccc
Confidence 35799999999999988777 32 257899998876 3211 1111 100 000
Q ss_pred CCCceEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331 126 AAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW 160 (269)
Q Consensus 126 ~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW 160 (269)
.....|.. +++.. .++++|+++|+..+|+
T Consensus 196 ~~~~~f~~---~Dl~~---l~~~fD~Vv~~~vL~H 224 (315)
T PLN02585 196 EVLPKFEA---NDLES---LSGKYDTVTCLDVLIH 224 (315)
T ss_pred ccceEEEE---cchhh---cCCCcCEEEEcCEEEe
Confidence 00113333 44432 2688999999988765
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.72 E-value=0.0062 Score=60.72 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331 23 LVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF 102 (269)
Q Consensus 23 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF 102 (269)
..|++.++...|.+.-....+.. .+.-.++|+|||.|..++.++ +. .|+.-++..|.-.+
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf~---~~~p~~lEIG~G~G~~~~~~A--------~~-------~p~~~~iGiE~~~~-- 382 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLVN---EKRKVFLEIGFGMGEHFINQA--------KM-------NPDALFIGVEVYLN-- 382 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhCC---CCCceEEEECCCchHHHHHHH--------Hh-------CCCCCEEEEEeeHH--
Confidence 37888888888877654433322 245789999999999988777 44 37888898888764
Q ss_pred HHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCc--cCCCCCCCceeeEeccccccc
Q 024331 103 NTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSF--YGRLFPRNSVHLFHSSYSLQW 160 (269)
Q Consensus 103 ntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSF--y~~lfP~~Svd~~~Ss~alHW 160 (269)
.+-+.+. +.. +.+ + .++.+. ++++ ....||++|||-+|-++.=-|
T Consensus 383 -~~~~~~~----~~~-~~~--l---~N~~~~--~~~~~~~~~~~~~~sv~~i~i~FPDPW 429 (506)
T PRK01544 383 -GVANVLK----LAG-EQN--I---TNFLLF--PNNLDLILNDLPNNSLDGIYILFPDPW 429 (506)
T ss_pred -HHHHHHH----HHH-HcC--C---CeEEEE--cCCHHHHHHhcCcccccEEEEECCCCC
Confidence 2222221 111 112 2 355553 3444 467799999999999887777
No 111
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.012 Score=54.43 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=48.0
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc-e
Q 024331 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ-C 130 (269)
Q Consensus 53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~-~ 130 (269)
+|+|+|||||.-++.++ ..+ |...|+..|+... .+ +-.+.+. ..+. .+ .
T Consensus 113 ~ilDlGTGSG~iai~la--------~~~-------~~~~V~a~Dis~~----------Al-~~A~~Na~~~~l---~~~~ 163 (280)
T COG2890 113 RILDLGTGSGAIAIALA--------KEG-------PDAEVIAVDISPD----------AL-ALARENAERNGL---VRVL 163 (280)
T ss_pred cEEEecCChHHHHHHHH--------hhC-------cCCeEEEEECCHH----------HH-HHHHHHHHHcCC---ccEE
Confidence 89999999999988887 543 6789999998764 11 1111111 1111 12 2
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES 170 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~ 170 (269)
++. ++.+..+-. .+|+++| .|+.+..
T Consensus 164 ~~~---~dlf~~~~~--~fDlIVs---------NPPYip~ 189 (280)
T COG2890 164 VVQ---SDLFEPLRG--KFDLIVS---------NPPYIPA 189 (280)
T ss_pred EEe---eecccccCC--ceeEEEe---------CCCCCCC
Confidence 322 366665544 8999999 5777764
No 112
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.69 E-value=0.013 Score=50.81 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=27.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
...+|+|+|||+|..++.++ +.. .+..+|+..|.-..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a--------~~~------~~~~~v~avD~~~~ 76 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS--------LLV------GETGKVYAVDKDEK 76 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH--------HHh------CCCCEEEEEECCHH
Confidence 45799999999998888766 321 14578999998554
No 113
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.68 E-value=0.0045 Score=54.59 Aligned_cols=103 Identities=21% Similarity=0.283 Sum_probs=61.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
.--+++|+|||.|..|..++ .+| =.+...|.... -.+..+++.+. . ++
T Consensus 43 ry~~alEvGCs~G~lT~~LA--------~rC---------d~LlavDis~~-----------Al~~Ar~Rl~~-~---~~ 90 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLA--------PRC---------DRLLAVDISPR-----------ALARARERLAG-L---PH 90 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHG--------GGE---------EEEEEEES-HH-----------HHHHHHHHTTT-----SS
T ss_pred ccceeEecCCCccHHHHHHH--------Hhh---------CceEEEeCCHH-----------HHHHHHHhcCC-C---CC
Confidence 34689999999999999888 776 35666665443 12234444432 1 22
Q ss_pred --eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 130 --CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 130 --~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
+-...+|. ..|++++|+++-+=.+++|+.. .|+..++..=.+-
T Consensus 91 V~~~~~dvp~-----~~P~~~FDLIV~SEVlYYL~~~------------------------------~~L~~~l~~l~~~ 135 (201)
T PF05401_consen 91 VEWIQADVPE-----FWPEGRFDLIVLSEVLYYLDDA------------------------------EDLRAALDRLVAA 135 (201)
T ss_dssp EEEEES-TTT--------SS-EEEEEEES-GGGSSSH------------------------------HHHHHHHHHHHHT
T ss_pred eEEEECcCCC-----CCCCCCeeEEEEehHhHcCCCH------------------------------HHHHHHHHHHHHH
Confidence 23333553 3699999999999888887541 2444444444566
Q ss_pred hccCCeEEEEec
Q 024331 208 LVAEGRMVLTFL 219 (269)
Q Consensus 208 L~pGG~lv~~~~ 219 (269)
|+|||.||+...
T Consensus 136 L~pgG~LV~g~~ 147 (201)
T PF05401_consen 136 LAPGGHLVFGHA 147 (201)
T ss_dssp EEEEEEEEEEEE
T ss_pred hCCCCEEEEEEe
Confidence 889999999764
No 114
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.67 E-value=0.01 Score=57.95 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=68.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|.-|+.++ ++. .+..+|+..|+..+ .+....+.+. +.| . .+
T Consensus 251 g~~VLDlgaG~G~~t~~la--------~~~------~~~~~v~avDi~~~-------~l~~~~~n~~-~~g--~---~~- 302 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIA--------ELL------KNTGKVVALDIHEH-------KLKLIEENAK-RLG--L---TN- 302 (444)
T ss_pred CCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEEeCCHH-------HHHHHHHHHH-HcC--C---Ce-
Confidence 4689999999999999777 432 13468999998665 1111111111 112 1 12
Q ss_pred EEeecCCCccCC--CCCCCceeeEecc---ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 131 FFTGVPGSFYGR--LFPRNSVHLFHSS---YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 131 f~~~vpgSFy~~--lfP~~Svd~~~Ss---~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
+..+-+++... .++ +++|++++- +....+++.|.... . . .+...+ ...+--..+|+.=.
T Consensus 303 -v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~-------~--~-~~~~~~----~l~~~q~~iL~~a~ 366 (444)
T PRK14902 303 -IETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKY-------N--K-TKEDIE----SLQEIQLEILESVA 366 (444)
T ss_pred -EEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhh-------c--C-CHHHHH----HHHHHHHHHHHHHH
Confidence 22333666443 244 789999872 22223333332111 0 0 111111 12222344555556
Q ss_pred hhhccCCeEEEEecccC
Q 024331 206 EELVAEGRMVLTFLGRK 222 (269)
Q Consensus 206 ~EL~pGG~lv~~~~g~~ 222 (269)
+-|+|||+|+.++....
T Consensus 367 ~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 367 QYLKKGGILVYSTCTIE 383 (444)
T ss_pred HHcCCCCEEEEEcCCCC
Confidence 67889999998876554
No 115
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.67 E-value=0.013 Score=52.83 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=23.7
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
...+|+|+|||+|..++.+. +. + + -+|+..|....
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~--------~~----g---~-~~v~giDis~~ 153 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAA--------KL----G---A-KKVLAVDIDPQ 153 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHH--------Hc----C---C-CeEEEEECCHH
Confidence 45799999999997665433 22 1 2 25888887654
No 116
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.61 E-value=0.015 Score=56.92 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=69.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
.-+|+|+|||+|..|+.++ +... +..+|+..|+...= +....+.++ +.| + .+
T Consensus 251 g~~VLDlgaG~G~kt~~la--------~~~~------~~~~V~avD~s~~~-------l~~~~~~~~-~~g--~---~~- 302 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMA--------ELMQ------NRGQITAVDRYPQK-------LEKIRSHAS-ALG--I---TI- 302 (445)
T ss_pred CCEEEEECCCCCHHHHHHH--------HHhC------CCcEEEEEECCHHH-------HHHHHHHHH-HhC--C---Ce-
Confidence 4689999999999998777 4321 23589999987761 111111111 112 1 12
Q ss_pred EEeecCCCccCCCCCCCceeeEec----cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHS----SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~S----s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 206 (269)
+..+-++.... .|++++|.++. +-+-+|- +-|... |. .++ +.. ++..+.-..+|+.=++
T Consensus 303 -v~~~~~Da~~~-~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~-------~~--~~~-~~~----~~l~~~q~~iL~~a~~ 365 (445)
T PRK14904 303 -IETIEGDARSF-SPEEQPDAILLDAPCTGTGVLG-RRAELR-------WK--LTP-EKL----AELVGLQAELLDHAAS 365 (445)
T ss_pred -EEEEeCccccc-ccCCCCCEEEEcCCCCCcchhh-cCcchh-------hc--CCH-HHH----HHHHHHHHHHHHHHHH
Confidence 22233555443 37788999984 1111121 112110 10 111 111 2233445567777677
Q ss_pred hhccCCeEEEEecccC
Q 024331 207 ELVAEGRMVLTFLGRK 222 (269)
Q Consensus 207 EL~pGG~lv~~~~g~~ 222 (269)
-|+|||+|+.+++...
T Consensus 366 ~lkpgG~lvystcs~~ 381 (445)
T PRK14904 366 LLKPGGVLVYATCSIE 381 (445)
T ss_pred hcCCCcEEEEEeCCCC
Confidence 7889999999998775
No 117
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.54 E-value=0.021 Score=53.58 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=61.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|.|||+|..++... . ....++..|.-.. . +......++ +.+ . .+
T Consensus 183 g~~vLDp~cGtG~~lieaa--------~---------~~~~v~g~Di~~~---~----~~~a~~nl~-~~g--~---~~- 231 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAG--------L---------MGAKVIGCDIDWK---M----VAGARINLE-HYG--I---ED- 231 (329)
T ss_pred cCEEEECCCCCCHHHHHHH--------H---------hCCeEEEEcCCHH---H----HHHHHHHHH-HhC--C---CC-
Confidence 4689999999997543222 1 1257888887543 0 111111111 112 1 12
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
+.-+-+++....++++++|++++. .|-... ...... . ...-...+|+.=++.|+|
T Consensus 232 -i~~~~~D~~~l~~~~~~~D~Iv~d--------PPyg~~-----~~~~~~----~-------~~~l~~~~l~~~~r~Lk~ 286 (329)
T TIGR01177 232 -FFVKRGDATKLPLSSESVDAIATD--------PPYGRS-----TTAAGD----G-------LESLYERSLEEFHEVLKS 286 (329)
T ss_pred -CeEEecchhcCCcccCCCCEEEEC--------CCCcCc-----ccccCC----c-------hHHHHHHHHHHHHHHccC
Confidence 122347888888888999999992 221111 000000 0 011123444444567889
Q ss_pred CCeEEEEeccc
Q 024331 211 EGRMVLTFLGR 221 (269)
Q Consensus 211 GG~lv~~~~g~ 221 (269)
||++++.+...
T Consensus 287 gG~lv~~~~~~ 297 (329)
T TIGR01177 287 EGWIVYAVPTR 297 (329)
T ss_pred CcEEEEEEcCC
Confidence 99999988654
No 118
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.02 Score=53.56 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=59.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (269)
++.+++|+|||||--|+..+ +. | ...|+..|+-.- .... .+.+. -++. .
T Consensus 162 ~g~~vlDvGcGSGILaIAa~--------kL----G----A~~v~g~DiDp~----------AV~a-a~eNa~~N~v---~ 211 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA--------KL----G----AKKVVGVDIDPQ----------AVEA-ARENARLNGV---E 211 (300)
T ss_pred CCCEEEEecCChhHHHHHHH--------Hc----C----CceEEEecCCHH----------HHHH-HHHHHHHcCC---c
Confidence 57899999999998887665 32 2 356888886443 1111 11111 1111 1
Q ss_pred ceEEeecCCCccCCCCCCC-ceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331 129 QCFFTGVPGSFYGRLFPRN-SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (269)
Q Consensus 129 ~~f~~~vpgSFy~~lfP~~-Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 207 (269)
. .+ --..|+..-+|.+ .+|+++.+ |. +.--.+...|+...|+
T Consensus 212 ~-~~--~~~~~~~~~~~~~~~~DvIVAN-------------------IL----------A~vl~~La~~~~~~lk----- 254 (300)
T COG2264 212 L-LV--QAKGFLLLEVPENGPFDVIVAN-------------------IL----------AEVLVELAPDIKRLLK----- 254 (300)
T ss_pred h-hh--hcccccchhhcccCcccEEEeh-------------------hh----------HHHHHHHHHHHHHHcC-----
Confidence 1 11 1145677778885 99999982 21 1222345566666655
Q ss_pred hccCCeEEEEe
Q 024331 208 LVAEGRMVLTF 218 (269)
Q Consensus 208 L~pGG~lv~~~ 218 (269)
|||++++|-
T Consensus 255 --pgg~lIlSG 263 (300)
T COG2264 255 --PGGRLILSG 263 (300)
T ss_pred --CCceEEEEe
Confidence 999999975
No 119
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.53 E-value=0.0058 Score=53.45 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=48.4
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF 132 (269)
Q Consensus 53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~ 132 (269)
.++|+|||.|...+.++ +. .|+..++..|.-.+ .+.+.+ .+..+. +. .++.+
T Consensus 20 l~lEIG~G~G~~l~~~A--------~~-------~Pd~n~iGiE~~~~---~v~~a~----~~~~~~-~l-----~Nv~~ 71 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA--------KR-------NPDINFIGIEIRKK---RVAKAL----RKAEKR-GL-----KNVRF 71 (195)
T ss_dssp EEEEET-TTSHHHHHHH--------HH-------STTSEEEEEES-HH---HHHHHH----HHHHHH-TT-----SSEEE
T ss_pred eEEEecCCCCHHHHHHH--------HH-------CCCCCEEEEecchH---HHHHHH----HHHHhh-cc-----cceEE
Confidence 99999999999988777 54 37899999998665 222211 112211 22 35544
Q ss_pred e-ecCCCccCCCCCCCceeeEeccccccc
Q 024331 133 T-GVPGSFYGRLFPRNSVHLFHSSYSLQW 160 (269)
Q Consensus 133 ~-~vpgSFy~~lfP~~Svd~~~Ss~alHW 160 (269)
. +=...+...++|++||+-++=.+-=-|
T Consensus 72 ~~~da~~~l~~~~~~~~v~~i~i~FPDPW 100 (195)
T PF02390_consen 72 LRGDARELLRRLFPPGSVDRIYINFPDPW 100 (195)
T ss_dssp EES-CTTHHHHHSTTTSEEEEEEES----
T ss_pred EEccHHHHHhhcccCCchheEEEeCCCCC
Confidence 4 333445667899999999988665555
No 120
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.51 E-value=0.019 Score=52.00 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=27.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
+.+|+|+|||+|..++.+. +.+ |..+|+..|....
T Consensus 87 ~~~vLDlg~GsG~i~l~la--------~~~-------~~~~v~~vDis~~ 121 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALA--------AAL-------DGIELHAADIDPA 121 (251)
T ss_pred CCEEEEecCchHHHHHHHH--------HhC-------CCCEEEEEECCHH
Confidence 4689999999999988777 432 4578999997543
No 121
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.031 Score=51.89 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHH
Q 024331 34 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ 113 (269)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~ 113 (269)
.+++..++++.....-+.-.|+|+|||+|+-|+.++ . ..|...|+..|...-=- ++--.+.
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll--------~-------~L~~~~v~AiD~S~~Ai----~La~eN~ 192 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLL--------H-------GLPQCTVTAIDVSKAAI----KLAKENA 192 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHH--------h-------cCCCceEEEEeccHHHH----HHHHHHH
Confidence 344444444432222234589999999999999887 3 33578888888876511 0000011
Q ss_pred HHHHHhcCCCCCCCCceEEe--ecCCCccCCC-CCCCceeeEeccccccccccCCCCCCC--CCcc-eEEcCCCCHHHHH
Q 024331 114 KILRKQLGSASGAAGQCFFT--GVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLES--NKGN-IFMASTSPPCVLT 187 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~--~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~--nkg~-i~~~~~s~~~v~~ 187 (269)
+.+. .. +.+-+. -.-++-|... .+.+.+|++.| .|+.+.+ +.+- .-+..-++.-+..
T Consensus 193 qr~~--l~------g~i~v~~~~me~d~~~~~~l~~~~~dllvs---------NPPYI~~dD~~~l~~eV~~yEp~lALd 255 (328)
T KOG2904|consen 193 QRLK--LS------GRIEVIHNIMESDASDEHPLLEGKIDLLVS---------NPPYIRKDDNRQLKPEVRLYEPKLALD 255 (328)
T ss_pred HHHh--hc------CceEEEecccccccccccccccCceeEEec---------CCCcccccchhhcCchheecCchhhhc
Confidence 1111 00 122222 1124444443 88999999999 4766653 1100 0000001110000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCC
Q 024331 188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 223 (269)
Q Consensus 188 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~ 223 (269)
.= .-.-.-+.+|+..-.|-|+|||.+.+.+.++..
T Consensus 256 Gg-~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 256 GG-LEGYDNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred cc-cchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 00 002244566777778889999999999988854
No 122
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.47 E-value=0.013 Score=55.57 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=60.1
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA 126 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~~ 126 (269)
...+|+|+|||-|.-.. +|... ..-.++..|+... ++..-.+.+.+ +.....
T Consensus 62 ~~~~VLDl~CGkGGDL~------------Kw~~~----~i~~~vg~Dis~~-------si~ea~~Ry~~~~~~~~~~~-- 116 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQ------------KWQKA----KIKHYVGIDISEE-------SIEEARERYKQLKKRNNSKQ-- 116 (331)
T ss_dssp TT-EEEEET-TTTTTHH------------HHHHT----T-SEEEEEES-HH-------HHHHHHHHHHHHHTSTT-HT--
T ss_pred CCCeEEEecCCCchhHH------------HHHhc----CCCEEEEEeCCHH-------HHHHHHHHHHHhcccccccc--
Confidence 57999999999998743 22111 2356777887554 12222222311 100000
Q ss_pred CCceEEe-ecCCCccC----CCCCCC--ceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHH
Q 024331 127 AGQCFFT-GVPGSFYG----RLFPRN--SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSL 199 (269)
Q Consensus 127 ~~~~f~~-~vpgSFy~----~lfP~~--Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~ 199 (269)
....|.+ -+.++-+. ..+++. .+|++-+-+|||..=. + ++-.+.
T Consensus 117 ~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe-----------------s------------e~~ar~ 167 (331)
T PF03291_consen 117 YRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFE-----------------S------------EEKARQ 167 (331)
T ss_dssp SEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGS-----------------S------------HHHHHH
T ss_pred ccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcC-----------------C------------HHHHHH
Confidence 0001111 12243332 245554 9999999999999322 1 123345
Q ss_pred HHhhhhhhhccCCeEEEEec
Q 024331 200 FLKCRSEELVAEGRMVLTFL 219 (269)
Q Consensus 200 FL~~Ra~EL~pGG~lv~~~~ 219 (269)
||+.=++=|+|||+++.+++
T Consensus 168 ~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 168 FLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEec
Confidence 66666777779999999987
No 123
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.29 E-value=0.027 Score=53.67 Aligned_cols=149 Identities=21% Similarity=0.264 Sum_probs=88.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+...|+|.|||+|.-|+..++.= .-.||...- +| +..+.+++.. +..+ .
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvEA-S~--------MAqyA~~Lv~--~N~~----~ 225 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVEA-SE--------MAQYARKLVA--SNNL----A 225 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC----------------cceEEEEeh-hH--------HHHHHHHHHh--cCCc----c
Confidence 35689999999999998877221 133443331 12 3333333322 2222 4
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
-.|..+||--.+--+|+. +|+++| -|- |.+ .| -++=+.++|.+| +=|+
T Consensus 226 ~rItVI~GKiEdieLPEk-~DviIS---------EPM------G~m------------L~---NERMLEsYl~Ar-k~l~ 273 (517)
T KOG1500|consen 226 DRITVIPGKIEDIELPEK-VDVIIS---------EPM------GYM------------LV---NERMLESYLHAR-KWLK 273 (517)
T ss_pred ceEEEccCccccccCchh-ccEEEe---------ccc------hhh------------hh---hHHHHHHHHHHH-hhcC
Confidence 577889999999888864 899998 121 111 22 346688899999 9999
Q ss_pred cCCeEEEEecccCCCCCCChhh--------hHHH------HHHHHHHHHHHHccCcccccccceecc
Q 024331 210 AEGRMVLTFLGRKSQDPSSKEC--------CYIW------ELLATALNNMVSEVTKSFLLLIVFNQL 262 (269)
Q Consensus 210 pGG~lv~~~~g~~~~~~~~~~~--------~~~~------~~l~~~l~~mv~eG~i~~~~~d~FnlP 262 (269)
|.|.|+=++ |+-.--|.+.|. ..|| +.=-..|..=+-+|+.++-.+|+|.+-
T Consensus 274 P~GkMfPT~-gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~R 339 (517)
T KOG1500|consen 274 PNGKMFPTV-GDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIR 339 (517)
T ss_pred CCCcccCcc-cceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccc
Confidence 999997654 443222333221 1123 111123344455677888888888753
No 124
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.027 Score=52.61 Aligned_cols=69 Identities=26% Similarity=0.384 Sum_probs=43.7
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc-
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ- 129 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~- 129 (269)
-+|||+|||-|.-++.++ ++. |+.++.+.|.- + +.+. +.+... ..+. .+
T Consensus 160 ~~vlDlGCG~Gvlg~~la--------~~~-------p~~~vtmvDvn---~----~Av~----~ar~Nl~~N~~---~~~ 210 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLA--------KKS-------PQAKLTLVDVN---A----RAVE----SARKNLAANGV---ENT 210 (300)
T ss_pred CcEEEeCCCccHHHHHHH--------HhC-------CCCeEEEEecC---H----HHHH----HHHHhHHHcCC---Ccc
Confidence 399999999999988777 553 78999999963 3 1121 122211 1111 12
Q ss_pred eEEeecCCCccCCCCCCCceeeEec
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHS 154 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~S 154 (269)
.... .+-|..+.. ++|+++|
T Consensus 211 ~v~~---s~~~~~v~~--kfd~Iis 230 (300)
T COG2813 211 EVWA---SNLYEPVEG--KFDLIIS 230 (300)
T ss_pred EEEE---ecccccccc--cccEEEe
Confidence 2222 566777666 9999999
No 125
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.24 E-value=0.0064 Score=56.34 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=83.8
Q ss_pred hHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecC
Q 024331 17 SYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLND 96 (269)
Q Consensus 17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nD 96 (269)
-|++.+..=...-....|+..+.+.. .+....++|.|||.|.-.. ..|-.-++..|
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~-----~~~gsv~~d~gCGngky~~-------------------~~p~~~~ig~D 72 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDS-----QPTGSVGLDVGCGNGKYLG-------------------VNPLCLIIGCD 72 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhc-----cCCcceeeecccCCcccCc-------------------CCCcceeeecc
Confidence 35555554233333345566665543 3346899999999984321 22557778888
Q ss_pred CCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceE
Q 024331 97 LPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIF 176 (269)
Q Consensus 97 LP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~ 176 (269)
+-.- |-. ..++.|.+ .-++ .+.-..++++.|+|.+.|...+||||.--
T Consensus 73 ~c~~--------l~~----~ak~~~~~----~~~~-----ad~l~~p~~~~s~d~~lsiavihhlsT~~----------- 120 (293)
T KOG1331|consen 73 LCTG--------LLG----GAKRSGGD----NVCR-----ADALKLPFREESFDAALSIAVIHHLSTRE----------- 120 (293)
T ss_pred hhhh--------hcc----ccccCCCc----eeeh-----hhhhcCCCCCCccccchhhhhhhhhhhHH-----------
Confidence 7654 211 11111110 0122 56678999999999999999999987521
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCC
Q 024331 177 MASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDP 226 (269)
Q Consensus 177 ~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~ 226 (269)
-+..+.+++ .++++|||.+.+..-+.....+
T Consensus 121 ----RR~~~l~e~---------------~r~lrpgg~~lvyvwa~~q~~~ 151 (293)
T KOG1331|consen 121 ----RRERALEEL---------------LRVLRPGGNALVYVWALEQHQS 151 (293)
T ss_pred ----HHHHHHHHH---------------HHHhcCCCceEEEEehhhccCc
Confidence 133344455 7789999999998877765433
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.17 E-value=0.059 Score=50.86 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=44.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+..+|+|+|||+|.+++.+. +.+. +.-+|+..|.... . +..-++.+. +.+.. .-
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA--------~~~~------~~g~VvgVDis~~-~------l~~Ar~~l~-~~g~~----nV 133 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMS--------RVVG------EKGLVVSVEYSRK-I------CEIAKRNVR-RLGIE----NV 133 (322)
T ss_pred CCCEEEEEeCCccHHHHHHH--------HhcC------CCCEEEEEECCHH-H------HHHHHHHHH-HcCCC----cE
Confidence 34799999999999998877 4431 1235777776543 0 111111111 11210 11
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSY 156 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~ 156 (269)
.++ -|+....+.+.+++|++++..
T Consensus 134 ~~i---~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 134 IFV---CGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred EEE---eCChhhcccccCCccEEEECC
Confidence 333 367766666667899998843
No 127
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.16 E-value=0.015 Score=50.24 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=26.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 99 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~ 99 (269)
..-+|+|+|||+|..++.+. +.. |..+|+..|+-.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la--------~~~-------~~~~V~~vD~s~ 74 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAG--------LLC-------PKGRVIAIERDE 74 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHC-------CCCEEEEEeCCH
Confidence 34699999999999888665 331 457899998754
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.15 E-value=0.034 Score=50.67 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=67.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|.-|+.+. +... +.-.|+..|.-..=. ....+.++ +.| . .++
T Consensus 72 g~~VLDl~ag~G~kt~~la--------~~~~------~~g~v~a~D~~~~~l-------~~~~~n~~-~~g--~---~~v 124 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQIS--------ALMK------NEGAIVANEFSKSRT-------KVLIANIN-RCG--V---LNV 124 (264)
T ss_pred cCEEEEECCCchHHHHHHH--------HHcC------CCCEEEEEcCCHHHH-------HHHHHHHH-HcC--C---CcE
Confidence 4689999999999998877 4321 234789999766511 11111111 112 1 122
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHH----HHHHHHHHHHHHHHHhhhhh
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVL----TAYYEQFQRDFSLFLKCRSE 206 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~----~ay~~Q~~~D~~~FL~~Ra~ 206 (269)
-+ +-++......+.+++|.++. +.|+.-. |.+. + .|+.. +.-..+..+.-..+|+.=.+
T Consensus 125 ~~--~~~D~~~~~~~~~~fD~Vl~--------D~Pcsg~---G~~~--~--~p~~~~~~~~~~~~~l~~~q~~iL~~a~~ 187 (264)
T TIGR00446 125 AV--TNFDGRVFGAAVPKFDAILL--------DAPCSGE---GVIR--K--DPSRKKNWSEEDIQEISALQKELIDSAFD 187 (264)
T ss_pred EE--ecCCHHHhhhhccCCCEEEE--------cCCCCCC---cccc--c--ChhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 22333222234456888886 4444311 1110 0 01110 01112233444557776677
Q ss_pred hhccCCeEEEEecccC
Q 024331 207 ELVAEGRMVLTFLGRK 222 (269)
Q Consensus 207 EL~pGG~lv~~~~g~~ 222 (269)
-|+|||+|+.++....
T Consensus 188 ~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 188 ALKPGGVLVYSTCSLE 203 (264)
T ss_pred hcCCCCEEEEEeCCCC
Confidence 7889999999887654
No 129
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.14 E-value=0.07 Score=46.71 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=69.5
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+..+++|+|||||.-|+..+ .. .|.-+||.-|--.-=. +.+..+ .++.| . ++
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a--------~~-------~p~~~v~AIe~~~~a~----~~~~~N----~~~fg--~---~n 85 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWA--------LA-------GPSGRVIAIERDEEAL----ELIERN----AARFG--V---DN 85 (187)
T ss_pred CCCEEEEeCCCccHHHHHHH--------Hh-------CCCceEEEEecCHHHH----HHHHHH----HHHhC--C---Cc
Confidence 35699999999999888666 33 2678888888543311 111110 01111 1 34
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCC-HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP-PCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~-~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
+.+. -|+.+.-|- +.|. .++|+|.++.. +.+.+++ .+-|
T Consensus 86 ~~vv--~g~Ap~~L~------------------~~~~-----~daiFIGGg~~i~~ile~~---------------~~~l 125 (187)
T COG2242 86 LEVV--EGDAPEALP------------------DLPS-----PDAIFIGGGGNIEEILEAA---------------WERL 125 (187)
T ss_pred EEEE--eccchHhhc------------------CCCC-----CCEEEECCCCCHHHHHHHH---------------HHHc
Confidence 4433 244443222 3331 36777777643 4455555 5567
Q ss_pred ccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccC
Q 024331 209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVT 250 (269)
Q Consensus 209 ~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~ 250 (269)
+|||++|+..... +.+..++..|.+-|.
T Consensus 126 ~~ggrlV~naitl--------------E~~~~a~~~~~~~g~ 153 (187)
T COG2242 126 KPGGRLVANAITL--------------ETLAKALEALEQLGG 153 (187)
T ss_pred CcCCeEEEEeecH--------------HHHHHHHHHHHHcCC
Confidence 8999999977433 356677777888776
No 130
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.03 E-value=0.059 Score=50.87 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=43.5
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (269)
+...+|+|+|||+|.-+-.+++.+. +. ...+..+-.|+... .+.....+-.-..+ +
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~----~~-------~~~~~Y~plDIS~~----------~L~~a~~~L~~~~~---p 130 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALE----RQ-------KKSVDYYALDVSRS----------ELQRTLAELPLGNF---S 130 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH----hc-------CCCceEEEEECCHH----------HHHHHHHhhhhccC---C
Confidence 3456899999999999888875442 21 12488899999875 22222211110123 4
Q ss_pred ceEEeecCCCccC
Q 024331 129 QCFFTGVPGSFYG 141 (269)
Q Consensus 129 ~~f~~~vpgSFy~ 141 (269)
.+-+.++.|+|..
T Consensus 131 ~l~v~~l~gdy~~ 143 (319)
T TIGR03439 131 HVRCAGLLGTYDD 143 (319)
T ss_pred CeEEEEEEecHHH
Confidence 5777788888866
No 131
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.98 E-value=0.046 Score=46.05 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=44.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
.-+|+|+|||+|..|..++ ++ ..+|+..|+... + .+.++++... . .++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~--------~~---------~~~v~~vE~~~~-~----------~~~~~~~~~~-~---~~v 61 (169)
T smart00650 14 GDTVLEIGPGKGALTEELL--------ER---------AARVTAIEIDPR-L----------APRLREKFAA-A---DNL 61 (169)
T ss_pred cCEEEEECCCccHHHHHHH--------hc---------CCeEEEEECCHH-H----------HHHHHHHhcc-C---CCE
Confidence 4689999999999998877 32 146777776643 1 1112222111 0 122
Q ss_pred EEeecCCCccCCCCCCCceeeEecc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSS 155 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss 155 (269)
..+-+++....+++.+.|.++|+
T Consensus 62 --~ii~~D~~~~~~~~~~~d~vi~n 84 (169)
T smart00650 62 --TVIHGDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred --EEEECchhcCCccccCCCEEEEC
Confidence 12348898888888888999884
No 132
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.98 E-value=0.021 Score=50.21 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=44.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
.-+|+|+|||.|..-. .+++. ..++.+.-++-.- .+-+ ..+ .| . ++
T Consensus 14 gsrVLDLGCGdG~LL~--------~L~~~--------k~v~g~GvEid~~---~v~~--------cv~-rG--v----~V 59 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLA--------YLKDE--------KQVDGYGVEIDPD---NVAA--------CVA-RG--V----SV 59 (193)
T ss_pred CCEEEecCCCchHHHH--------HHHHh--------cCCeEEEEecCHH---HHHH--------HHH-cC--C----CE
Confidence 4899999999996432 22232 3567777764321 1111 111 12 1 22
Q ss_pred EEeecCCCccCC--CCCCCceeeEecccccccccc
Q 024331 131 FFTGVPGSFYGR--LFPRNSVHLFHSSYSLQWLSQ 163 (269)
Q Consensus 131 f~~~vpgSFy~~--lfP~~Svd~~~Ss~alHWLS~ 163 (269)
+-++...- -||++|+|.++-+-+||=+.+
T Consensus 60 ----iq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 60 ----IQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred ----EECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 22555553 399999999999888887543
No 133
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.88 E-value=0.042 Score=48.74 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.9
Q ss_pred CceEEEeecCCCCcccHHHH
Q 024331 50 TKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~ 69 (269)
...+|+|+|||+|++|..+.
T Consensus 72 pg~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHH
Confidence 35899999999999998777
No 134
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.84 E-value=0.0017 Score=58.05 Aligned_cols=103 Identities=24% Similarity=0.336 Sum_probs=58.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC---CCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS---ASGA 126 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~---~~~~ 126 (269)
+.-+.+|.|+|-|+-|-.++. |.|+ ..|+-. . .+.|.+.++...+. +.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl-----------------~~f~--~VDlVE--p------~~~Fl~~a~~~l~~~~~~v-- 105 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLL-----------------PVFD--EVDLVE--P------VEKFLEQAKEYLGKDNPRV-- 105 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCC-----------------CC-S--EEEEEE--S-------HHHHHHHHHHTCCGGCCE--
T ss_pred CcceEEecccccchhHHHHHH-----------------HhcC--EeEEec--c------CHHHHHHHHHHhcccCCCc--
Confidence 567999999999988765441 1111 112211 1 23444444433322 22
Q ss_pred CCceEEeecCCCccCCCCCC-CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 127 AGQCFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 127 ~~~~f~~~vpgSFy~~lfP~-~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
..+|.++.- +| -|+ +..|++|.=|++..|.+ .|+-.||+-=.
T Consensus 106 -~~~~~~gLQ-~f----~P~~~~YDlIW~QW~lghLTD-------------------------------~dlv~fL~RCk 148 (218)
T PF05891_consen 106 -GEFYCVGLQ-DF----TPEEGKYDLIWIQWCLGHLTD-------------------------------EDLVAFLKRCK 148 (218)
T ss_dssp -EEEEES-GG-G--------TT-EEEEEEES-GGGS-H-------------------------------HHHHHHHHHHH
T ss_pred -ceEEecCHh-hc----cCCCCcEeEEEehHhhccCCH-------------------------------HHHHHHHHHHH
Confidence 356666433 22 354 79999999776666533 78999999888
Q ss_pred hhhccCCeEEEEe
Q 024331 206 EELVAEGRMVLTF 218 (269)
Q Consensus 206 ~EL~pGG~lv~~~ 218 (269)
+-|+|||.+++=-
T Consensus 149 ~~L~~~G~IvvKE 161 (218)
T PF05891_consen 149 QALKPNGVIVVKE 161 (218)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhCcCCcEEEEEe
Confidence 8899999999853
No 135
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.70 E-value=0.038 Score=52.51 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=71.5
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+.-+|+|.|||||--|+..+ +. | ...|+.. |++.+.. ...++-..++ + .
T Consensus 60 ~dK~VlDVGcGtGILS~F~a--------kA----G----A~~V~aV-----e~S~ia~----~a~~iv~~N~--~----~ 108 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAA--------KA----G----ARKVYAV-----EASSIAD----FARKIVKDNG--L----E 108 (346)
T ss_pred CCCEEEEcCCCccHHHHHHH--------Hh----C----cceEEEE-----echHHHH----HHHHHHHhcC--c----c
Confidence 46799999999999988777 33 1 2445555 3444432 2222322222 2 2
Q ss_pred eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 209 (269)
.-+.-+.|.-.+..+|...||++.|-|.=+|| -++.=+...|-+|-+=|+
T Consensus 109 ~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L------------------------------l~EsMldsVl~ARdkwL~ 158 (346)
T KOG1499|consen 109 DVITVIKGKVEDIELPVEKVDIIVSEWMGYFL------------------------------LYESMLDSVLYARDKWLK 158 (346)
T ss_pred ceEEEeecceEEEecCccceeEEeehhhhHHH------------------------------HHhhhhhhhhhhhhhccC
Confidence 34455778889999999999999995554443 245667788899999999
Q ss_pred cCCeEE
Q 024331 210 AEGRMV 215 (269)
Q Consensus 210 pGG~lv 215 (269)
|||+++
T Consensus 159 ~~G~i~ 164 (346)
T KOG1499|consen 159 EGGLIY 164 (346)
T ss_pred CCceEc
Confidence 999986
No 136
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.69 E-value=0.04 Score=49.56 Aligned_cols=135 Identities=9% Similarity=-0.023 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHH
Q 024331 32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS 111 (269)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~ 111 (269)
..|.|.+-+.++. .++.-+|++.|||.|.+...++ ++ -.+|+..|+...==...|+....
T Consensus 28 pnp~L~~~~~~l~---~~~~~rvLvPgCGkg~D~~~LA--------~~---------G~~V~GvDlS~~Ai~~~~~e~~~ 87 (226)
T PRK13256 28 PNEFLVKHFSKLN---INDSSVCLIPMCGCSIDMLFFL--------SK---------GVKVIGIELSEKAVLSFFSQNTI 87 (226)
T ss_pred CCHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------hC---------CCcEEEEecCHHHHHHHHHHcCC
Confidence 3455544444332 2245799999999999999888 43 37899999877622222221100
Q ss_pred HHHHHHHh-cCCCCCCCCceEEeecCCCccCCCCCC---CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHH
Q 024331 112 FQKILRKQ-LGSASGAAGQCFFTGVPGSFYGRLFPR---NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLT 187 (269)
Q Consensus 112 ~~~~~~~~-~~~~~~~~~~~f~~~vpgSFy~~lfP~---~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ 187 (269)
... ..+. ....+ ...-+.-+-|+|++...+. +.+|+++=..+|+=| +++.+.
T Consensus 88 ~~~-~~~~~~~~~~---~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al--------------------pp~~R~ 143 (226)
T PRK13256 88 NYE-VIHGNDYKLY---KGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL--------------------PNDLRT 143 (226)
T ss_pred Ccc-eeccccccee---ccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC--------------------CHHHHH
Confidence 000 0000 00000 0111223348999864322 578998887777654 334455
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331 188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR 221 (269)
Q Consensus 188 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~ 221 (269)
.|++ .+.+. |+|||.+++.++-.
T Consensus 144 ~Y~~----~l~~l-------L~pgg~llll~~~~ 166 (226)
T PRK13256 144 NYAK----MMLEV-------CSNNTQILLLVMEH 166 (226)
T ss_pred HHHH----HHHHH-------hCCCcEEEEEEEec
Confidence 6654 33444 45999999998854
No 137
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.62 E-value=0.063 Score=51.06 Aligned_cols=142 Identities=19% Similarity=0.263 Sum_probs=89.3
Q ss_pred ccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCC
Q 024331 9 MNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLP 88 (269)
Q Consensus 9 M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p 88 (269)
|-||-|..+|.-+-.+|+. +.....++.+.+.+.+.. +...-..+|.|-|.|+.+-.++ ..| |
T Consensus 138 ~l~~~~~~~~~~~~~~~~s-m~~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll--------~~f-------p 200 (342)
T KOG3178|consen 138 MLGGYGGADERFSKDFNGS-MSFLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLL--------SKY-------P 200 (342)
T ss_pred hhhhhcccccccHHHHHHH-HHHHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHH--------HhC-------C
Confidence 5666555555444444432 222333333333333332 3446789999999998877666 444 6
Q ss_pred cceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEecccccc-ccccCCCC
Q 024331 89 EFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQVPDG 167 (269)
Q Consensus 89 ~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH-WLS~~P~~ 167 (269)
.+..+=-|+|.= +. .....+. + |.-+.|++++- .|++- ++|--|.|| |
T Consensus 201 ~ik~infdlp~v--------~~-----~a~~~~~-----g---V~~v~gdmfq~-~P~~d--aI~mkWiLhdw------- 249 (342)
T KOG3178|consen 201 HIKGINFDLPFV--------LA-----AAPYLAP-----G---VEHVAGDMFQD-TPKGD--AIWMKWILHDW------- 249 (342)
T ss_pred CCceeecCHHHH--------Hh-----hhhhhcC-----C---cceeccccccc-CCCcC--eEEEEeecccC-------
Confidence 677776666543 10 1100001 1 33455999999 89886 899888887 5
Q ss_pred CCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCC
Q 024331 168 LESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 223 (269)
Q Consensus 168 l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~ 223 (269)
-.+|+.+||+.=.+=|+|||.+++.-.-.++
T Consensus 250 -------------------------tDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 250 -------------------------TDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred -------------------------ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 1278999999889999999999999875443
No 138
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.55 E-value=0.091 Score=49.06 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=23.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
..+|+|+|||||--++..+ +. | .-+|+..|.-..
T Consensus 162 g~~vLDvG~GSGILaiaA~--------kl----G----A~~v~a~DiDp~ 195 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAA--------KL----G----AKKVVAIDIDPL 195 (295)
T ss_dssp TSEEEEES-TTSHHHHHHH--------HT----T----BSEEEEEESSCH
T ss_pred CCEEEEeCCcHHHHHHHHH--------Hc----C----CCeEEEecCCHH
Confidence 4699999999998877655 32 2 246889986443
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.35 E-value=0.051 Score=53.15 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=62.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (269)
..+|+|+|||+|..|+.++ +.. .+|+..|.... +... ++++. ..+. ..-
T Consensus 298 ~~~VLDlgcGtG~~sl~la--------~~~---------~~V~gvD~s~~----------al~~-A~~n~~~~~~--~~v 347 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLA--------RQA---------AEVVGVEGVEA----------MVER-ARENARRNGL--DNV 347 (443)
T ss_pred CCEEEEEeccCCHHHHHHH--------HhC---------CEEEEEeCCHH----------HHHH-HHHHHHHcCC--Cce
Confidence 4699999999999988776 331 46888887654 2211 21111 1111 011
Q ss_pred eEEeecCCCccC----CCCCCCceeeEecc-------ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHH
Q 024331 130 CFFTGVPGSFYG----RLFPRNSVHLFHSS-------YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFS 198 (269)
Q Consensus 130 ~f~~~vpgSFy~----~lfP~~Svd~~~Ss-------~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~ 198 (269)
-|+. +++.. ..++++++|++++. -.++||.++.+ ++-||++.. |. -+.+|+.
T Consensus 348 ~~~~---~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~-----~~ivyvSCn-p~--------tlaRDl~ 410 (443)
T PRK13168 348 TFYH---ANLEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGP-----KRIVYVSCN-PA--------TLARDAG 410 (443)
T ss_pred EEEE---eChHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCC-----CeEEEEEeC-hH--------HhhccHH
Confidence 3333 55543 23567789999963 45577766422 466888763 21 1678998
Q ss_pred HHHh
Q 024331 199 LFLK 202 (269)
Q Consensus 199 ~FL~ 202 (269)
.+.+
T Consensus 411 ~L~~ 414 (443)
T PRK13168 411 VLVE 414 (443)
T ss_pred HHhh
Confidence 8864
No 140
>PLN02672 methionine S-methyltransferase
Probab=95.30 E-value=0.043 Score=59.31 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
..+|+|+|||+|.-++.+. +.+ |..+|+..|+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La--------~~~-------~~~~v~avDis~~ 153 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIA--------EKW-------LPSKVYGLDINPR 153 (1082)
T ss_pred CCEEEEEecchHHHHHHHH--------HHC-------CCCEEEEEECCHH
Confidence 3589999999999999887 543 4579999998776
No 141
>PRK00811 spermidine synthase; Provisional
Probab=95.29 E-value=0.11 Score=47.85 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
.+++.+|+|+|||+|..+..++ ++ ++.-+|...|+-..
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l--------~~-------~~~~~V~~VEid~~ 111 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVL--------KH-------PSVEKITLVEIDER 111 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHH--------cC-------CCCCEEEEEeCCHH
Confidence 3567899999999998876555 32 12346778877654
No 142
>PRK03612 spermidine synthase; Provisional
Probab=95.17 E-value=0.12 Score=51.87 Aligned_cols=50 Identities=10% Similarity=-0.016 Sum_probs=30.4
Q ss_pred hhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccccccc
Q 024331 206 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLK 267 (269)
Q Consensus 206 ~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~ 267 (269)
+-|+|||++++.... +.. . -+.+..+.+.|.+.|. .-.-.+.++|-|.+|
T Consensus 403 ~~L~pgG~lv~~~~~-----~~~-~----~~~~~~i~~~l~~~gf--~v~~~~~~vps~g~w 452 (521)
T PRK03612 403 RRLAPDGLLVVQSTS-----PYF-A----PKAFWSIEATLEAAGL--ATTPYHVNVPSFGEW 452 (521)
T ss_pred HhcCCCeEEEEecCC-----ccc-c----hHHHHHHHHHHHHcCC--EEEEEEeCCCCcchh
Confidence 446699999986521 111 1 1345667777777887 344456667877544
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=94.95 E-value=0.042 Score=49.88 Aligned_cols=71 Identities=8% Similarity=0.115 Sum_probs=43.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+|||+|.-++.++ +++. ..+.++|+..|+-.+ ... ..++.. . ...
T Consensus 50 ~grVLDlG~GSG~Lalala--------~~~~----~~~~~~V~aVEID~~----------Al~-~Ar~n~-~-----~~~ 100 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMV--------HMMM----YAKPREIVCVELNHT----------YYK-LGKRIV-P-----EAT 100 (241)
T ss_pred CCEEEEccChHHHHHHHHH--------Hhcc----cCCCcEEEEEECCHH----------HHH-HHHhhc-c-----CCE
Confidence 4699999999998877765 3321 123578999997665 211 111111 1 123
Q ss_pred EEeecCCCccCCCCCCCceeeEec
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHS 154 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~S 154 (269)
++. ++|....+ ++++|+++|
T Consensus 101 ~~~---~D~~~~~~-~~~FDlIIs 120 (241)
T PHA03412 101 WIN---ADALTTEF-DTLFDMAIS 120 (241)
T ss_pred EEE---cchhcccc-cCCccEEEE
Confidence 333 67765444 569999999
No 144
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.90 E-value=0.21 Score=46.04 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=32.1
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
++++|--.|||||-=.-.++-.+.++... ..+..++|+..|+...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDId~~ 140 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDIDLS 140 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEECCHH
Confidence 58999999999997766555444444432 1335799999998654
No 145
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.53 E-value=0.26 Score=44.17 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=28.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 99 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~ 99 (269)
++.+|+|+||++|..++.++ ... ++..+|+..|...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la--------~~~------~~~g~v~tiD~d~ 103 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTA--------LAL------PEDGRITAIDIDK 103 (234)
T ss_pred CCCEEEEecCcccHHHHHHH--------HhC------CCCCEEEEEECCH
Confidence 46899999999999998777 332 2357888888765
No 146
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=94.49 E-value=0.045 Score=53.91 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=43.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (269)
+..+|+|+|||+|+-+...++ +..+. + -.++||...--.|=. ..+ +...++.+++ ..
T Consensus 186 ~~~vVldVGAGrGpL~~~al~----A~~~~----~---~a~~VyAVEkn~~A~----~~l----~~~v~~n~w~----~~ 242 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQ----AGARA----G---GAVKVYAVEKNPNAV----VTL----QKRVNANGWG----DK 242 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHH----TTHHH----C---CESEEEEEESSTHHH----HHH----HHHHHHTTTT----TT
T ss_pred cceEEEEeCCCccHHHHHHHH----HHHHh----C---CCeEEEEEcCCHhHH----HHH----HHHHHhcCCC----Ce
Confidence 358999999999988776652 22211 1 248888888655511 111 1111222331 12
Q ss_pred eEEeecCCCccCCCCCCCceeeEec
Q 024331 130 CFFTGVPGSFYGRLFPRNSVHLFHS 154 (269)
Q Consensus 130 ~f~~~vpgSFy~~lfP~~Svd~~~S 154 (269)
|.-+-|+...--.|. -+|+++|
T Consensus 243 --V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 243 --VTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp --EEEEES-TTTSCHSS--EEEEEE
T ss_pred --EEEEeCcccCCCCCC-ceeEEEE
Confidence 344557777766665 9999999
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.13 Score=45.80 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.5
Q ss_pred CceEEEeecCCCCcccHHHH
Q 024331 50 TKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~ 69 (269)
...+|+++|||+|++|..+.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla 91 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLA 91 (209)
T ss_pred CCCeEEEECCCchHHHHHHH
Confidence 46899999999999998665
No 148
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=94.36 E-value=0.11 Score=44.46 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=24.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 99 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~ 99 (269)
+..+|+++|||+|--++.+. ... +...|+++|.+.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a--------~~~-------~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAA--------KLF-------GAARVVLTDYNE 79 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHH--------HT--------T-SEEEEEE-S-
T ss_pred CCceEEEECCccchhHHHHH--------hcc-------CCceEEEeccch
Confidence 46899999999998888766 221 347899999876
No 149
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=94.29 E-value=0.63 Score=45.17 Aligned_cols=116 Identities=11% Similarity=-0.007 Sum_probs=61.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|+||++|..++..+ .. ...+|+..|+... .+....+.+. ..+-+. ..-.
T Consensus 221 g~rVLDlfsgtG~~~l~aa--------~~--------ga~~V~~VD~s~~-------al~~a~~N~~-~Ngl~~--~~v~ 274 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSAL--------MG--------GCSQVVSVDTSQE-------ALDIARQNVE-LNKLDL--SKAE 274 (396)
T ss_pred CCeEEEeccCCCHHHHHHH--------hC--------CCCEEEEEECCHH-------HHHHHHHHHH-HcCCCC--CcEE
Confidence 4689999999999765433 11 2358888887654 0111111111 112110 0112
Q ss_pred EEeecCCCccCCC--C--CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331 131 FFTGVPGSFYGRL--F--PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (269)
Q Consensus 131 f~~~vpgSFy~~l--f--P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 206 (269)
++. |+.+.-+ + ...++|++++ -|+.+..+|. . ...+.+++..+++.=.+
T Consensus 275 ~i~---~D~~~~l~~~~~~~~~fDlVil---------DPP~f~~~k~----------~-----l~~~~~~y~~l~~~a~~ 327 (396)
T PRK15128 275 FVR---DDVFKLLRTYRDRGEKFDVIVM---------DPPKFVENKS----------Q-----LMGACRGYKDINMLAIQ 327 (396)
T ss_pred EEE---ccHHHHHHHHHhcCCCCCEEEE---------CCCCCCCChH----------H-----HHHHHHHHHHHHHHHHH
Confidence 333 5655432 1 2458999997 3444432111 1 11244566666666567
Q ss_pred hhccCCeEEEEec
Q 024331 207 ELVAEGRMVLTFL 219 (269)
Q Consensus 207 EL~pGG~lv~~~~ 219 (269)
-|+|||.+++...
T Consensus 328 lLk~gG~lv~~sc 340 (396)
T PRK15128 328 LLNPGGILLTFSC 340 (396)
T ss_pred HcCCCeEEEEEeC
Confidence 7899999987553
No 150
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.26 E-value=0.22 Score=47.29 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=40.8
Q ss_pred eEEeecCCCccCCC-----CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331 130 CFFTGVPGSFYGRL-----FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (269)
Q Consensus 130 ~f~~~vpgSFy~~l-----fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 204 (269)
.|++| -+|+.+| +++-++|++=|=+|+|+.= .+. .-...+|+.=
T Consensus 175 ~f~~~--Dc~~~~l~d~~e~~dp~fDivScQF~~HYaF-----------------ete------------e~ar~~l~Nv 223 (389)
T KOG1975|consen 175 VFIAA--DCFKERLMDLLEFKDPRFDIVSCQFAFHYAF-----------------ETE------------ESARIALRNV 223 (389)
T ss_pred EEEEe--ccchhHHHHhccCCCCCcceeeeeeeEeeee-----------------ccH------------HHHHHHHHHH
Confidence 55553 5665532 4666699999999999821 111 2234566777
Q ss_pred hhhhccCCeEEEEeccc
Q 024331 205 SEELVAEGRMVLTFLGR 221 (269)
Q Consensus 205 a~EL~pGG~lv~~~~g~ 221 (269)
++-|+|||.++-+++-.
T Consensus 224 a~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 224 AKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HhhcCCCcEEEEecCcH
Confidence 88899999999887543
No 151
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.10 E-value=0.051 Score=49.72 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=49.2
Q ss_pred ceeeccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHH------------H
Q 024331 5 QVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASE------------L 72 (269)
Q Consensus 5 ~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~------------i 72 (269)
+.+.|.|=.-...|.+|-..+..++..+...+. ..+..+|+|+|||+|..|..+++. .
T Consensus 7 ~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~ 76 (272)
T PRK00274 7 ELLERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDL 76 (272)
T ss_pred HHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHH
Confidence 344444433445566655555554444332221 123468999999999999988863 3
Q ss_pred HHHHHHHHHhcCCCCCcceEEecCCCCCchHH
Q 024331 73 IKVVNKICDKLGSQLPEFQVFLNDLPGNDFNT 104 (269)
Q Consensus 73 i~~i~~~~~~~~~~~p~~qv~~nDLP~NDFnt 104 (269)
++.+++.. ..+.++++..|...-++..
T Consensus 77 ~~~~~~~~-----~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 77 APILAETF-----AEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHhh-----ccCceEEEEChhhcCCHHH
Confidence 44444332 1146788887766555543
No 152
>PRK04457 spermidine synthase; Provisional
Probab=94.07 E-value=0.059 Score=49.20 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
+.+-+|+|+|||+|.-+..+. +++ |..+|...|+-..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~--------~~~-------p~~~v~~VEidp~ 101 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIY--------TYL-------PDTRQTAVEINPQ 101 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHH--------HhC-------CCCeEEEEECCHH
Confidence 456799999999998776655 432 5678888887443
No 153
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=94.05 E-value=0.5 Score=42.07 Aligned_cols=128 Identities=21% Similarity=0.192 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHH
Q 024331 32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS 111 (269)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~ 111 (269)
..|.|.+-+..+. .+..-+|++-|||.|...+.++ ++ -.+|+..|+... .
T Consensus 22 ~~p~L~~~~~~l~---~~~~~rvLvPgCG~g~D~~~La--------~~---------G~~VvGvDls~~----------A 71 (218)
T PF05724_consen 22 PNPALVEYLDSLA---LKPGGRVLVPGCGKGYDMLWLA--------EQ---------GHDVVGVDLSPT----------A 71 (218)
T ss_dssp STHHHHHHHHHHT---TSTSEEEEETTTTTSCHHHHHH--------HT---------TEEEEEEES-HH----------H
T ss_pred CCHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------HC---------CCeEEEEecCHH----------H
Confidence 4566666665531 2345799999999999988777 54 389999998775 2
Q ss_pred HHHHHHHhcCC--CCCCCCce------EEeecCCCccCCCCCC-CceeeEeccccccccccCCCCCCCCCcceEEcCCCC
Q 024331 112 FQKILRKQLGS--ASGAAGQC------FFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP 182 (269)
Q Consensus 112 ~~~~~~~~~~~--~~~~~~~~------f~~~vpgSFy~~lfP~-~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~ 182 (269)
.. ...++.+. ........ .+.-+-|+||..--.. +++|++|=-.+|+=| +
T Consensus 72 i~-~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al--------------------p 130 (218)
T PF05724_consen 72 IE-QAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL--------------------P 130 (218)
T ss_dssp HH-HHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS---------------------
T ss_pred HH-HHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC--------------------C
Confidence 11 11111110 00000111 1233458999833222 258999998887653 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331 183 PCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR 221 (269)
Q Consensus 183 ~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~ 221 (269)
++.++.|++|. ++=|+|||.+++.++-.
T Consensus 131 p~~R~~Ya~~l-----------~~ll~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 131 PEMRERYAQQL-----------ASLLKPGGRGLLITLEY 158 (218)
T ss_dssp GGGHHHHHHHH-----------HHCEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHH-----------HHHhCCCCcEEEEEEEc
Confidence 33456776644 34566999955555433
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.86 E-value=0.28 Score=44.18 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=67.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (269)
-.++|+|||.|...+.++ ++ .|+.-++..+.-.+ .+-+.+ .+.. +.+. .|+.
T Consensus 50 pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiGiEi~~~---~v~~~l----~k~~-~~~l-----~Nlr 101 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLGIEIRVP---GVAKAL----KKIK-ELGL-----KNLR 101 (227)
T ss_pred cEEEEECCCCCHHHHHHH--------HH-------CCCCCEEEEEEehH---HHHHHH----HHHH-HcCC-----CcEE
Confidence 589999999998877666 43 48888888887766 111111 1111 1121 2444
Q ss_pred EeecC-CCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 132 FTGVP-GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 132 ~~~vp-gSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
+.-.- --+...++|++|+|=++=++.=-| |..-- +|.+|- .++-.+.| ++-|+|
T Consensus 102 i~~~DA~~~l~~~~~~~sl~~I~i~FPDPW----pKkRH-~KRRl~-----~~~fl~~~---------------a~~Lk~ 156 (227)
T COG0220 102 LLCGDAVEVLDYLIPDGSLDKIYINFPDPW----PKKRH-HKRRLT-----QPEFLKLY---------------ARKLKP 156 (227)
T ss_pred EEcCCHHHHHHhcCCCCCeeEEEEECCCCC----CCccc-cccccC-----CHHHHHHH---------------HHHccC
Confidence 44211 123556778889999998776666 32110 333432 22333333 677779
Q ss_pred CCeEEEEe
Q 024331 211 EGRMVLTF 218 (269)
Q Consensus 211 GG~lv~~~ 218 (269)
||.+.+.+
T Consensus 157 gG~l~~aT 164 (227)
T COG0220 157 GGVLHFAT 164 (227)
T ss_pred CCEEEEEe
Confidence 99999954
No 155
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=93.54 E-value=0.4 Score=43.69 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=24.9
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
+++.+|+++|||+|..+..++ ++ .+.-++...|+..+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll--------~~-------~~~~~v~~veid~~ 107 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVL--------KH-------KSVEKATLVDIDEK 107 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHH--------hC-------CCcceEEEEeCCHH
Confidence 456699999999998655444 22 12346778887554
No 156
>PLN02366 spermidine synthase
Probab=93.50 E-value=0.4 Score=44.97 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=24.9
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
.+++-+|+++|||.|..+..++ +. ++.-+|...|+...
T Consensus 89 ~~~pkrVLiIGgG~G~~~rell--------k~-------~~v~~V~~VEiD~~ 126 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIA--------RH-------SSVEQIDICEIDKM 126 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHH--------hC-------CCCCeEEEEECCHH
Confidence 4567899999999998544333 22 12346777777653
No 157
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.79 E-value=0.4 Score=49.76 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=63.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (269)
.-+|+|+||++|..|+.++ +. ..-+|+..|+... .+ +..+++. ..++...+-
T Consensus 539 g~rVLDlf~gtG~~sl~aa--------~~--------Ga~~V~~vD~s~~----------al-~~a~~N~~~ng~~~~~v 591 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAA--------LG--------GAKSTTTVDMSNT----------YL-EWAERNFALNGLSGRQH 591 (702)
T ss_pred CCeEEEcCCCCCHHHHHHH--------HC--------CCCEEEEEeCCHH----------HH-HHHHHHHHHhCCCccce
Confidence 4699999999999999777 32 1236899998765 21 1111111 011100011
Q ss_pred eEEeecCCCccCCCC-CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331 130 CFFTGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 130 ~f~~~vpgSFy~~lf-P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
-|+. ++.+.-+- ..+++|++++. |+.+...+. ...+ ....+|...++..=.+-|
T Consensus 592 ~~i~---~D~~~~l~~~~~~fDlIilD---------PP~f~~~~~--------~~~~-----~~~~~~y~~l~~~a~~lL 646 (702)
T PRK11783 592 RLIQ---ADCLAWLKEAREQFDLIFID---------PPTFSNSKR--------MEDS-----FDVQRDHVALIKDAKRLL 646 (702)
T ss_pred EEEE---ccHHHHHHHcCCCcCEEEEC---------CCCCCCCCc--------cchh-----hhHHHHHHHHHHHHHHHc
Confidence 2333 66543110 15689999983 555542110 0011 123455566665546678
Q ss_pred ccCCeEEEEec
Q 024331 209 VAEGRMVLTFL 219 (269)
Q Consensus 209 ~pGG~lv~~~~ 219 (269)
+|||.++++..
T Consensus 647 ~~gG~l~~~~~ 657 (702)
T PRK11783 647 RPGGTLYFSNN 657 (702)
T ss_pred CCCCEEEEEeC
Confidence 99999988653
No 158
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=92.47 E-value=0.22 Score=44.58 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=83.3
Q ss_pred ceeeccCCCCCchHHHhcHHHHHHHHH---HHHHHHHHHHhhcccC--CCCceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 024331 5 QVLHMNGGVGGTSYASNSLVQEKVISI---AKPITEEAMTKLFCST--SPTKVAIADLGCSSGPNTLLVASELIKVVNKI 79 (269)
Q Consensus 5 ~~l~M~gG~g~~sY~~nS~~Q~~~~~~---~~~~l~~ai~~~~~~~--~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~ 79 (269)
..+...|| -.+|-..|.. -+...+ .--+|-+.+.+..... ...+++++|+||=+..|.+..
T Consensus 4 ~ei~~~GG--l~~YQ~AS~~-Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~----------- 69 (219)
T PF11968_consen 4 AEIEALGG--LEAYQRASKQ-GQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST----------- 69 (219)
T ss_pred HHHHHccC--HHHHHHHHHh-cCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-----------
Confidence 34445565 5667666554 222222 2233333344333221 234699999999988886622
Q ss_pred HHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCC---CCceeeEeccc
Q 024331 80 CDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFP---RNSVHLFHSSY 156 (269)
Q Consensus 80 ~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP---~~Svd~~~Ss~ 156 (269)
+ +-|.|..-||-+. .| .+.- -+|..+++| ++++|+|.+|.
T Consensus 70 ~-------~~fdvt~IDLns~--------~~------------------~I~q----qDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 70 S-------GWFDVTRIDLNSQ--------HP------------------GILQ----QDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred c-------CceeeEEeecCCC--------CC------------------Ccee----eccccCCCCCCcccceeEEEEEE
Confidence 1 4588888888765 11 1222 478888886 77999999999
Q ss_pred cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCe-----EEEEecccC
Q 024331 157 SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGR-----MVLTFLGRK 222 (269)
Q Consensus 157 alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~-----lv~~~~g~~ 222 (269)
-|.+ +|.+.. +-+..+-...||+ |+|. |+++++-..
T Consensus 113 VLNf---VP~p~~--------------------RG~Ml~r~~~fL~-------~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 113 VLNF---VPDPKQ--------------------RGEMLRRAHKFLK-------PPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEee---CCCHHH--------------------HHHHHHHHHHHhC-------CCCccCcceEEEEeCchH
Confidence 8877 454211 2223455667777 9999 888887553
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=92.39 E-value=0.27 Score=44.27 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=28.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
+..+|+|+|||+|..|..++ ++ ..-+|+..|...+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~--------~~--------ga~~v~avD~~~~ 109 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL--------QK--------GAKEVYGVDVGYN 109 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH--------Hc--------CCCEEEEEeCCHH
Confidence 45699999999999998777 43 2357999999887
No 160
>PRK01581 speE spermidine synthase; Validated
Probab=92.01 E-value=0.91 Score=43.83 Aligned_cols=38 Identities=26% Similarity=0.163 Sum_probs=25.7
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
.++|.+|+++|||+|..+..++ +. ++.-+|...|+-..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelL--------k~-------~~v~~It~VEIDpe 185 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVL--------KY-------ETVLHVDLVDLDGS 185 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHH--------hc-------CCCCeEEEEeCCHH
Confidence 4567899999999997443333 21 23467888887664
No 161
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=90.59 E-value=0.56 Score=43.64 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=29.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
.+++|...|||||-=.-.++--+.+.... ....++|+..|+..+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~-------~~~~~~I~atDIs~~ 158 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGT-------APGRWKVFASDIDTE 158 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcc-------cCCCcEEEEEECCHH
Confidence 46999999999996655444333333221 112699999999775
No 162
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=90.35 E-value=0.53 Score=44.50 Aligned_cols=77 Identities=8% Similarity=0.092 Sum_probs=42.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CC-CCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GS-ASGAA 127 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~-~~~~~ 127 (269)
...+|+|+|||+|.-...+. .+ .+..+++..|+-.. .. +..+... .. ++ .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa--------~~-------~~~~~~~atDId~~----------Al-~~A~~Nv~~Np~l--~ 165 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG--------VH-------EYGWRFVGSDIDPQ----------AL-ASAQAIISANPGL--N 165 (321)
T ss_pred CCceEEEecCCccHHHHHHH--------hh-------CCCCEEEEEeCCHH----------HH-HHHHHHHHhccCC--c
Confidence 46899999999995544443 32 14578999998443 11 1111111 11 12 1
Q ss_pred CceEE--eecCCCccCCC-CCCCceeeEec
Q 024331 128 GQCFF--TGVPGSFYGRL-FPRNSVHLFHS 154 (269)
Q Consensus 128 ~~~f~--~~vpgSFy~~l-fP~~Svd~~~S 154 (269)
..+-+ ...++.++..+ .+.+.+|+++|
T Consensus 166 ~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 166 GAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred CcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 12322 33444544433 47889999999
No 163
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=89.60 E-value=0.54 Score=38.54 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331 29 ISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 99 (269)
Q Consensus 29 ~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~ 99 (269)
++++..++...++... ....+.+|+|+|||.|+-|..+.. .+.. ..+..+|+..|.-.
T Consensus 6 i~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~--------~l~~---~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 6 IERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAH--------LLCN---SSPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHH--------HHHh---cCCCCeEEEEECCc
Confidence 3445555555544431 234579999999999999998873 2110 12668899988654
No 164
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=89.14 E-value=1.6 Score=43.46 Aligned_cols=129 Identities=13% Similarity=0.229 Sum_probs=67.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
..+|+|++||.|.-|..++ +... .+-.|+.||...+=...|-+++. +.| + .++
T Consensus 114 g~~VLD~CAAPGgKTt~la--------~~l~------~~g~lvA~D~~~~R~~~L~~nl~--------r~G--~---~nv 166 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIA--------ALMN------NQGAIVANEYSASRVKVLHANIS--------RCG--V---SNV 166 (470)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHcC------CCCEEEEEeCCHHHHHHHHHHHH--------HcC--C---CeE
Confidence 4799999999999998877 4421 23589999987774433333332 112 1 233
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC----CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES----NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 206 (269)
-+...-+.-....+| +++|.|.- ++|++=.. +.+..+ ..++..+ ++..+-=+.+|..=++
T Consensus 167 ~v~~~D~~~~~~~~~-~~fD~ILv--------DaPCSG~G~~rk~p~~~~--~~s~~~v-----~~l~~lQ~~iL~~A~~ 230 (470)
T PRK11933 167 ALTHFDGRVFGAALP-ETFDAILL--------DAPCSGEGTVRKDPDALK--NWSPESN-----LEIAATQRELIESAFH 230 (470)
T ss_pred EEEeCchhhhhhhch-hhcCeEEE--------cCCCCCCcccccCHHHhh--hCCHHHH-----HHHHHHHHHHHHHHHH
Confidence 333211111122333 35777764 45554221 111111 1111111 1122222445555566
Q ss_pred hhccCCeEEEEecccC
Q 024331 207 ELVAEGRMVLTFLGRK 222 (269)
Q Consensus 207 EL~pGG~lv~~~~g~~ 222 (269)
=|+|||+||-+++.-.
T Consensus 231 ~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 231 ALKPGGTLVYSTCTLN 246 (470)
T ss_pred HcCCCcEEEEECCCCC
Confidence 6789999999987664
No 165
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=89.05 E-value=1.2 Score=39.94 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=17.4
Q ss_pred CceEEEeecCCCCcccHHHH
Q 024331 50 TKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~ 69 (269)
+.-+|+|+|||+|..|..+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~ 48 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLL 48 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHH
Confidence 45799999999999888777
No 166
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.12 E-value=9.1 Score=33.85 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHH
Q 024331 32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS 111 (269)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~ 111 (269)
.++.||+...++-.. .+.-.+++|||+|--|-.+++.+. |.+..+..|+-.- .
T Consensus 28 LlDaLekd~~eL~~~---~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiNp~----------A 80 (209)
T KOG3191|consen 28 LLDALEKDAAELKGH---NPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDINPE----------A 80 (209)
T ss_pred HHHHHHHHHHHHhhc---CceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCCHH----------H
Confidence 567778877776432 367899999999977776663222 5577788886321 1
Q ss_pred HHHHHH-HhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHH
Q 024331 112 FQKILR-KQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYY 190 (269)
Q Consensus 112 ~~~~~~-~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~ 190 (269)
....+. .+.+ .+-+-.|-.|+..-+-+ +|+|+..= .|+.+....+.|- ..-...+|+
T Consensus 81 ~~~Tl~TA~~n-------~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~i~-----~~~i~~a~a 138 (209)
T KOG3191|consen 81 LEATLETARCN-------RVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEEIG-----DEGIASAWA 138 (209)
T ss_pred HHHHHHHHHhc-------CCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCcccch-----hHHHHHHHh
Confidence 111111 1111 12233344677666666 88887654 2555543222221 011123444
Q ss_pred --HHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 191 --EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 191 --~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
+-.+.=..+||..=-.-|.|-|.+++..+-++
T Consensus 139 GG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 139 GGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred cCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 33444556677655666779999999887664
No 167
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=87.94 E-value=1.3 Score=40.31 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=27.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 99 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~ 99 (269)
++-+|+++|+++|..|+.++ +.. ++..+|+-.|...
T Consensus 79 ~ak~iLEiGT~~GySal~la--------~al------~~~g~v~tiE~~~ 114 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATA--------LAL------PEDGKILAMDINR 114 (247)
T ss_pred CCCEEEEEeChhhHHHHHHH--------hhC------CCCCEEEEEeCCH
Confidence 47899999999999999877 321 2456788887754
No 168
>PLN02476 O-methyltransferase
Probab=87.48 E-value=1.7 Score=40.37 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=27.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
++-+|+|+||++|..|+.++ ... ++.-.|+..|....
T Consensus 118 ~ak~VLEIGT~tGySal~lA--------~al------~~~G~V~TiE~d~e 154 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVA--------LVL------PESGCLVACERDSN 154 (278)
T ss_pred CCCeEEEecCCCCHHHHHHH--------HhC------CCCCEEEEEECCHH
Confidence 47899999999999999887 332 23456777776553
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=87.46 E-value=0.9 Score=41.13 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=31.4
Q ss_pred CceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCcceEEecCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGND 101 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDLP~ND 101 (269)
+.-+|+|+|||+|..|..+++. .++.++++.. ..+.+.++..|.-.-+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~----~~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI----AAGNVEIIEGDALKVD 88 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc----cCCCEEEEEeccccCC
Confidence 3478999999999999988864 3444444331 1245777766654433
No 170
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=87.37 E-value=2.8 Score=38.60 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 195 RDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 195 ~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
..+.+|++.=.+-|.|||+||+==-+|+
T Consensus 186 ~GL~~ff~kis~ll~pgGiLvvEPQpWk 213 (288)
T KOG2899|consen 186 DGLRRFFRKISSLLHPGGILVVEPQPWK 213 (288)
T ss_pred HHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence 5677788877888889999999554554
No 171
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=87.09 E-value=5.1 Score=36.79 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.1
Q ss_pred CceEEEeecCCCCcccH
Q 024331 50 TKVAIADLGCSSGPNTL 66 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~ 66 (269)
.|.+|+|+|||.|.-+.
T Consensus 33 ~P~~vLD~GsGpGta~w 49 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALW 49 (274)
T ss_pred CCceEEEecCChHHHHH
Confidence 57899999999997544
No 172
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=86.88 E-value=1 Score=38.00 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
+..+++|+|||.|.-|-.++ ++. .+...|+..|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~--------~~~------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL--------QRG------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH--------TST------TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeee--------ecc------cccceEEEEecccc
Confidence 57999999999999988777 331 25689999999877
No 173
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=86.76 E-value=0.92 Score=42.30 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=25.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
+.+|+|+|||+|..++.++ ++ ..+|+..|....
T Consensus 174 ~~~VLDl~cG~G~~sl~la--------~~---------~~~V~gvD~s~~ 206 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA--------TP---------GMQLTGIEISAE 206 (315)
T ss_pred CCEEEEccCCCCHHHHHHH--------hc---------CCEEEEEeCCHH
Confidence 4789999999999988777 22 257888887654
No 174
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=86.53 E-value=2 Score=38.47 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=28.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
++-+|+++|.+.|+.|+.++ ... +.+.+++-.|....
T Consensus 59 ~~k~iLEiGT~~GySal~mA--------~~l------~~~g~l~tiE~~~e 95 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMA--------LAL------PDDGRLTTIERDEE 95 (219)
T ss_pred CCceEEEeecccCHHHHHHH--------hhC------CCCCeEEEEeCCHH
Confidence 57899999999999999888 432 12567888877664
No 175
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=86.46 E-value=7.4 Score=37.14 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=75.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
.-+|+|+=++-|.-|..++ +.. ......|+.+|...+=...|..++. +.|- .++
T Consensus 157 ge~VlD~cAAPGGKTthla--------~~~-----~~~~~iV~A~D~~~~Rl~~l~~nl~--------RlG~-----~nv 210 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLA--------ELM-----ENEGAIVVAVDVSPKRLKRLRENLK--------RLGV-----RNV 210 (355)
T ss_pred cCEEEEECCCCCCHHHHHH--------Hhc-----CCCCceEEEEcCCHHHHHHHHHHHH--------HcCC-----Cce
Confidence 4899999999999999887 543 2234668999998874444444332 2222 233
Q ss_pred EEeecCCCccCCCCCCC-ceeeEeccccccccccCCCCCCC----CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 131 FFTGVPGSFYGRLFPRN-SVHLFHSSYSLQWLSQVPDGLES----NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~-Svd~~~Ss~alHWLS~~P~~l~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
-+.-.-++.+....+.. .+|-+.- +.|++-.. +.+.-|--....-.....++. .+|.+=.
T Consensus 211 ~~~~~d~~~~~~~~~~~~~fD~iLl--------DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~-------~iL~~a~ 275 (355)
T COG0144 211 IVVNKDARRLAELLPGGEKFDRILL--------DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQK-------EILAAAL 275 (355)
T ss_pred EEEecccccccccccccCcCcEEEE--------CCCCCCCcccccCccccccCCHHHHHHHHHHHH-------HHHHHHH
Confidence 33334444444455554 4887765 66776542 122112111111112223333 3444445
Q ss_pred hhhccCCeEEEEecccCC
Q 024331 206 EELVAEGRMVLTFLGRKS 223 (269)
Q Consensus 206 ~EL~pGG~lv~~~~g~~~ 223 (269)
+-|||||.|+-+++....
T Consensus 276 ~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 276 KLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred HhcCCCCEEEEEccCCch
Confidence 555699999999988863
No 176
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.04 E-value=0.43 Score=42.03 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.6
Q ss_pred CceEEEeecCCCCcccHHHH
Q 024331 50 TKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~ 69 (269)
+.-+|+|+|||||..++...
T Consensus 45 ~g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHH
Confidence 45689999999999888654
No 177
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=83.59 E-value=1.1 Score=39.35 Aligned_cols=19 Identities=21% Similarity=0.032 Sum_probs=15.7
Q ss_pred ceEEEeecCCCCcccHHHH
Q 024331 51 KVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~ 69 (269)
..+|+|+|||+|.-++.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 54 DARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CCEEEEcCCCccHHHHHHH
Confidence 3699999999998887544
No 178
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=83.12 E-value=0.83 Score=41.71 Aligned_cols=28 Identities=7% Similarity=0.022 Sum_probs=20.6
Q ss_pred HHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 195 RDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 195 ~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
-++..++-.=+.-|+|||++.||.=.-.
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEecccC
Confidence 4555666666888999999999875443
No 179
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=83.04 E-value=8.3 Score=28.32 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=15.0
Q ss_pred hhhhhccCCeEEEEecccCC
Q 024331 204 RSEELVAEGRMVLTFLGRKS 223 (269)
Q Consensus 204 Ra~EL~pGG~lv~~~~g~~~ 223 (269)
..+-++|||.+++.......
T Consensus 141 ~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 141 LLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred HHHhcCCCcEEEEEeccCCC
Confidence 35557799999999876653
No 180
>PRK04148 hypothetical protein; Provisional
Probab=83.04 E-value=2.2 Score=35.37 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=14.6
Q ss_pred CceEEEeecCCCCc-ccHHHH
Q 024331 50 TKVAIADLGCSSGP-NTLLVA 69 (269)
Q Consensus 50 ~~~~IaD~GCs~G~-Ns~~~~ 69 (269)
+..+|+|+|||+|. .+..+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH
Confidence 35799999999996 444333
No 181
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=82.12 E-value=2.6 Score=37.21 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=27.8
Q ss_pred CceEEEeecCCCCcccHHHH---------------------HHHHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331 50 TKVAIADLGCSSGPNTLLVA---------------------SELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF 102 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~---------------------~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF 102 (269)
+.-+++|+|||.|.-.+..+ ....+.++++++..|....++++..-|.-.+||
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 35699999999998755332 222333344444445455567777666655554
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=81.73 E-value=3.8 Score=38.13 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=34.6
Q ss_pred CceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331 50 TKVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDF 102 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF 102 (269)
..-+|+|+|||+|.-|..+++. .++.++++....+ ..+.++++..|.-..|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKTEF 99 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhhcc
Confidence 3468999999999999988753 4556665543222 12457777777755444
No 183
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=81.69 E-value=1.8 Score=38.25 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHH
Q 024331 28 VISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 28 ~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 69 (269)
+..++..+|..-+. ++. ...+.-+|+|||||.|.--..+.
T Consensus 47 ae~riv~wl~d~~~-~~r-v~~~A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 47 AEERIVDWLKDLIV-ISR-VSKQADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred HHHHHHHHHHhhhh-hhh-hcccccceeeccCCchHHHHHHH
Confidence 34455666666554 221 12222399999999996544443
No 184
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.19 E-value=4.1 Score=41.78 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=73.6
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCC--CCCcceEEecCC-C--CCchHHHHHhhHHHHHHHHHhcCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGS--QLPEFQVFLNDL-P--GNDFNTIFRSLASFQKILRKQLGSA 123 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~--~~p~~qv~~nDL-P--~NDFntLF~~l~~~~~~~~~~~~~~ 123 (269)
.+.++|+|+|=|+|.|.+.+++..-+ .+++ ++ ....++++--+. | .-|+..+.+..|.+.. +.++..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~-~~~~----~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~-~~~~l~-- 127 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQ-FRQR----HPPARLKRLHFISFEKFPLTRADLARAHQHWPELAP-LAEQLQ-- 127 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHH-hhhh----CCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHH-HHHHHH--
Confidence 34699999999999999998854222 1211 11 112466666664 2 3455555444333221 111110
Q ss_pred CCCCCceEEeecCCCccCCCCCCCc--eeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 024331 124 SGAAGQCFFTGVPGSFYGRLFPRNS--VHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL 201 (269)
Q Consensus 124 ~~~~~~~f~~~vpgSFy~~lfP~~S--vd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 201 (269)
..|...++| ++...|.++. +++.+- -+...|++++.. -+.+|..+.+|..=-+-|...+-+.+.+.+
T Consensus 128 -----~~~~~~~~g-~~~~~~~~~~~~l~l~~g-d~~~~~~~~~~~----~d~~~lD~FsP~~np~~W~~~~~~~l~~~~ 196 (662)
T PRK01747 128 -----AQWPLLLPG-CHRLLFDDGRVTLDLWFG-DANELLPQLDAR----ADAWFLDGFAPAKNPDMWSPNLFNALARLA 196 (662)
T ss_pred -----HhCCccCCC-ceEEEecCCcEEEEEEec-CHHHHHHhcccc----ccEEEeCCCCCccChhhccHHHHHHHHHHh
Confidence 112223343 4444555553 334443 222344444421 367888888874444456555555554444
Q ss_pred hhhhhhhccCCeEEE
Q 024331 202 KCRSEELVAEGRMVL 216 (269)
Q Consensus 202 ~~Ra~EL~pGG~lv~ 216 (269)
+|||.++-
T Consensus 197 -------~~~~~~~t 204 (662)
T PRK01747 197 -------RPGATLAT 204 (662)
T ss_pred -------CCCCEEEE
Confidence 49988873
No 185
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=80.34 E-value=7.1 Score=37.63 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=38.6
Q ss_pred cCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeE
Q 024331 135 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 214 (269)
Q Consensus 135 vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 214 (269)
+.+.|-..+|+++++|++.+.-+.+..++ . .++|++++ ++++|||+.
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~------------------~---~~~y~Ei~------------rv~kpGG~~ 211 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPD------------------L---EKVYAEIY------------RVLKPGGLF 211 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCc------------------H---HHHHHHHh------------cccCCCceE
Confidence 55899999999999999999666555322 1 22444433 458899999
Q ss_pred EEEeccc
Q 024331 215 VLTFLGR 221 (269)
Q Consensus 215 v~~~~g~ 221 (269)
++-...+
T Consensus 212 i~~e~i~ 218 (364)
T KOG1269|consen 212 IVKEWIK 218 (364)
T ss_pred EeHHHHH
Confidence 9886644
No 186
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=80.03 E-value=21 Score=32.80 Aligned_cols=125 Identities=22% Similarity=0.223 Sum_probs=74.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (269)
-.+|+|.|.|||.-|+.++ ..- .|+-+|+--|.-. ||-...+. . +.. .+ + .+.
T Consensus 95 g~rVlEAGtGSG~lt~~La--------~~v------g~~G~v~tyE~r~-d~~k~A~~--N----l~~-~~--l---~d~ 147 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLA--------RAV------GPEGHVTTYEIRE-DFAKTARE--N----LSE-FG--L---GDR 147 (256)
T ss_pred CCEEEEcccCchHHHHHHH--------Hhh------CCCceEEEEEecH-HHHHHHHH--H----HHH-hc--c---ccc
Confidence 5799999999999988777 221 1456666666544 55222221 0 111 11 2 111
Q ss_pred EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
+.-.-|+...-.+++ .+|.++= ++|. |-.+.+-. .+.|+|
T Consensus 148 -v~~~~~Dv~~~~~~~-~vDav~L--------Dmp~---------------PW~~le~~---------------~~~Lkp 187 (256)
T COG2519 148 -VTLKLGDVREGIDEE-DVDAVFL--------DLPD---------------PWNVLEHV---------------SDALKP 187 (256)
T ss_pred -eEEEecccccccccc-ccCEEEE--------cCCC---------------hHHHHHHH---------------HHHhCC
Confidence 111228888888888 8888876 4454 22233333 677889
Q ss_pred CCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccc
Q 024331 211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLL 256 (269)
Q Consensus 211 GG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~ 256 (269)
||.+++-.+. .+.+...+..|.+.|.++.+.+
T Consensus 188 gg~~~~y~P~--------------veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 188 GGVVVVYSPT--------------VEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred CcEEEEEcCC--------------HHHHHHHHHHHHhcCccchhhh
Confidence 9999886532 2456777777777788665543
No 187
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=79.04 E-value=23 Score=32.46 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=29.8
Q ss_pred ceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCC
Q 024331 148 SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 223 (269)
Q Consensus 148 Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~ 223 (269)
..|.+.|++||.=.++- .++|.+ -++++ ++=|||||.|++...-..+
T Consensus 158 ~~D~v~s~fcLE~a~~d---------------------~~~y~~----al~ni----~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 158 KFDCVISSFCLESACKD---------------------LDEYRR----ALRNI----SSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp SEEEEEEESSHHHH-SS---------------------HHHHHH----HHHHH----HTTEEEEEEEEEEEESS-S
T ss_pred chhhhhhhHHHHHHcCC---------------------HHHHHH----HHHHH----HHHcCCCcEEEEEEEcCce
Confidence 59999999999875442 124433 23333 3456699999998775543
No 188
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=78.13 E-value=50 Score=29.93 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceec
Q 024331 193 FQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQ 261 (269)
Q Consensus 193 ~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~Fnl 261 (269)
+....+.||+ +||.+++++-.+.-+.....+ +.++...+.|.++|+ +.++..+|
T Consensus 160 ~~~Na~~fLk-------~gG~~~i~iKa~siD~t~~p~-----~vf~~e~~~L~~~~~---~~~e~i~L 213 (229)
T PF01269_consen 160 AALNARHFLK-------PGGHLIISIKARSIDSTADPE-----EVFAEEVKKLKEEGF---KPLEQITL 213 (229)
T ss_dssp HHHHHHHHEE-------EEEEEEEEEEHHHH-SSSSHH-----HHHHHHHHHHHCTTC---EEEEEEE-
T ss_pred HHHHHHhhcc-------CCcEEEEEEecCcccCcCCHH-----HHHHHHHHHHHHcCC---ChheEecc
Confidence 4455666777 999999999876533222212 467788888888888 44444444
No 189
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=77.40 E-value=2.9 Score=40.02 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=16.1
Q ss_pred eEEEeecCCCCcccHHHH
Q 024331 52 VAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~ 69 (269)
-+|+|+|||+|..++.++
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 589999999999988777
No 190
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=74.47 E-value=3.3 Score=35.81 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=25.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
..+++|++||+|.-++.++ .+. .-.|++.|....
T Consensus 50 g~~vLDLfaGsG~lglea~--------srg--------a~~v~~vE~~~~ 83 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEAL--------SRG--------AKVAFLEEDDRK 83 (189)
T ss_pred CCEEEEecCCCcHHHHHHH--------hCC--------CCEEEEEeCCHH
Confidence 4689999999999988777 431 136888887554
No 191
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=74.32 E-value=4.9 Score=38.64 Aligned_cols=50 Identities=22% Similarity=0.162 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhccc-----CCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecC
Q 024331 30 SIAKPITEEAMTKLFCS-----TSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLND 96 (269)
Q Consensus 30 ~~~~~~l~~ai~~~~~~-----~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nD 96 (269)
+++.=.|++++...... ......+++|+|||+|.-|-.++ ++ ...|+..|
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~--------~r---------G~~V~AVD 240 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLV--------RR---------GMFVTAVD 240 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHH--------Hc---------CCEEEEEe
Confidence 34455677777665421 12346899999999999998777 44 25899999
No 192
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.94 E-value=3.7 Score=35.41 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=35.1
Q ss_pred cCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeE
Q 024331 135 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 214 (269)
Q Consensus 135 vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 214 (269)
|.++-..+.|-++|+|+++...-+--| - . .+. .-+.+.|.+||+ |||.|
T Consensus 34 vc~As~e~~F~dns~d~iyaeHvlEHl---t-----------~-----~Eg-----~~alkechr~Lr-------p~G~L 82 (185)
T COG4627 34 VCRASNESMFEDNSVDAIYAEHVLEHL---T-----------Y-----DEG-----TSALKECHRFLR-------PGGKL 82 (185)
T ss_pred hhhhhhhccCCCcchHHHHHHHHHHHH---h-----------H-----HHH-----HHHHHHHHHHhC-------cCcEE
Confidence 346667888999999998773222211 0 0 111 114566666666 99999
Q ss_pred EEEeccc
Q 024331 215 VLTFLGR 221 (269)
Q Consensus 215 v~~~~g~ 221 (269)
-++.+..
T Consensus 83 riAvPdl 89 (185)
T COG4627 83 RIAVPDL 89 (185)
T ss_pred EEEcCCc
Confidence 9997743
No 193
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=71.47 E-value=5.6 Score=38.46 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=42.6
Q ss_pred CCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceE
Q 024331 13 VGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQV 92 (269)
Q Consensus 13 ~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv 92 (269)
.+...|+-|...-+.....+...+.. .. ...+|+|++||+|.-++.++ ... +.-+|
T Consensus 29 ~~~vFyqp~~~~nrdl~~~v~~~~~~--------~~-~~~~vLDl~aGsG~~~l~~a--------~~~-------~~~~V 84 (382)
T PRK04338 29 WAPVFYNPRMELNRDISVLVLRAFGP--------KL-PRESVLDALSASGIRGIRYA--------LET-------GVEKV 84 (382)
T ss_pred CCCeeeCccccchhhHHHHHHHHHHh--------hc-CCCEEEECCCcccHHHHHHH--------HHC-------CCCEE
Confidence 35678888888777665555444432 11 13689999999999998876 321 22468
Q ss_pred EecCCCCC
Q 024331 93 FLNDLPGN 100 (269)
Q Consensus 93 ~~nDLP~N 100 (269)
+.+|.-.+
T Consensus 85 ~a~Din~~ 92 (382)
T PRK04338 85 TLNDINPD 92 (382)
T ss_pred EEEeCCHH
Confidence 88887554
No 194
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=71.16 E-value=15 Score=35.12 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=27.8
Q ss_pred eEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCcceEEecCC
Q 024331 52 VAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDL 97 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDL 97 (269)
.+|+|++||+|..|+.+.+. .++..++.....+. ..++++..|.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~--~~v~~~~~d~ 263 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI--DNVQIIRMSA 263 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEEECCH
Confidence 46999999999999977642 33444433322222 2467777765
No 195
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=70.83 E-value=11 Score=35.57 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 024331 31 IAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (269)
Q Consensus 31 ~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP 98 (269)
.+...|+++|..+.. ...+++|+|+-||+|+- +++++.+. +..| .+|.++|..
T Consensus 118 ~l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRY-------vlDal~~~-----~~~~-~~i~LrDys 170 (311)
T PF12147_consen 118 HLEELIRQAIARLRE--QGRPVRILDIAAGHGRY-------VLDALEKH-----PERP-DSILLRDYS 170 (311)
T ss_pred HHHHHHHHHHHHHHh--cCCceEEEEeccCCcHH-------HHHHHHhC-----CCCC-ceEEEEeCC
Confidence 355666666666532 35789999999999976 45555543 1113 588888764
No 196
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=69.64 E-value=13 Score=34.33 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.0
Q ss_pred CceEEEeecCCCCcccHHHH
Q 024331 50 TKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~ 69 (269)
+..+++|+|.|.|.-|..+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~ 113 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA 113 (265)
T ss_pred cCCceEEecCCCcHHHHHHH
Confidence 45789999999998888665
No 197
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=69.21 E-value=6.6 Score=38.08 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=17.0
Q ss_pred ceEEEeecCCCCcccHHHH
Q 024331 51 KVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~ 69 (269)
..+|+|+|||+|..++.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999876
No 198
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=69.13 E-value=9 Score=34.97 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 34 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
-.|++|++... ...+..+++|+|+|||..|.-++ ++ -.-.||..|.-.|
T Consensus 65 ~KL~~ale~F~--l~~k~kv~LDiGsSTGGFTd~lL--------q~--------gAk~VyavDVG~~ 113 (245)
T COG1189 65 LKLEKALEEFE--LDVKGKVVLDIGSSTGGFTDVLL--------QR--------GAKHVYAVDVGYG 113 (245)
T ss_pred HHHHHHHHhcC--cCCCCCEEEEecCCCccHHHHHH--------Hc--------CCcEEEEEEccCC
Confidence 34555555442 24567899999999999998777 44 2478999999999
No 199
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=68.86 E-value=4.5 Score=37.05 Aligned_cols=51 Identities=22% Similarity=0.375 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331 33 KPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 99 (269)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~ 99 (269)
+|.|+....++... .+.+-+|+|+|||-=|.++..+ ...|.+.++..|+-.
T Consensus 89 l~~Ld~fY~~if~~-~~~p~sVlDigCGlNPlalp~~---------------~~~~~a~Y~a~DID~ 139 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR-IPPPDSVLDIGCGLNPLALPWM---------------PEAPGATYIAYDIDS 139 (251)
T ss_dssp GGGHHHHHHHHCCC-S---SEEEEET-TTCHHHHHTT---------------TSSTT-EEEEEESBH
T ss_pred hhhHHHHHHHHHhc-CCCCchhhhhhccCCceehhhc---------------ccCCCcEEEEEeCCH
Confidence 45555555555442 3448899999998777666545 234668999998754
No 200
>PRK00536 speE spermidine synthase; Provisional
Probab=67.60 E-value=83 Score=28.92 Aligned_cols=36 Identities=6% Similarity=-0.176 Sum_probs=26.5
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
.++|-+|+=+|=|.|...-.++ +. |+ +|.+.|+-..
T Consensus 70 h~~pk~VLIiGGGDGg~~REvL--------kh--------~~-~v~mVeID~~ 105 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLF--------KY--------DT-HVDFVQADEK 105 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHH--------Cc--------CC-eeEEEECCHH
Confidence 5778999999999997655444 32 34 8888888653
No 201
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=65.65 E-value=7 Score=31.49 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=13.4
Q ss_pred CceEEEeecCCCCcccH
Q 024331 50 TKVAIADLGCSSGPNTL 66 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~ 66 (269)
++...+|+|||.|--.-
T Consensus 58 ~~~~FVDlGCGNGLLV~ 74 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVY 74 (112)
T ss_pred CCCceEEccCCchHHHH
Confidence 46789999999995433
No 202
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=64.14 E-value=4.4 Score=34.72 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 024331 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (269)
Q Consensus 53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP 98 (269)
+|+|.-||.|.||+.++ +.+ -+|+..|+-
T Consensus 2 ~vlD~fcG~GGNtIqFA--------~~~---------~~Viaidid 30 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFA--------RTF---------DRVIAIDID 30 (163)
T ss_dssp EEEETT-TTSHHHHHHH--------HTT----------EEEEEES-
T ss_pred EEEEeccCcCHHHHHHH--------HhC---------CeEEEEECC
Confidence 69999999999999998 543 367888853
No 203
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=63.30 E-value=8.3 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.9
Q ss_pred eEEEeecCCCCcccHHHH
Q 024331 52 VAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~ 69 (269)
.+|+|+|||+|..|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la 216 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA 216 (353)
T ss_pred CcEEEEeccccHHHHHHH
Confidence 369999999999999766
No 204
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=62.39 E-value=11 Score=34.70 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=49.3
Q ss_pred eecCCCccC--CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331 133 TGVPGSFYG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (269)
Q Consensus 133 ~~vpgSFy~--~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 210 (269)
--+.|+-|+ +=|+++|+|+++- =|+-+. . +.+-|+..|-+.+.+.|+ |
T Consensus 188 ~iilGD~~e~V~~~~D~sfDaIiH---------DPPRfS------------~--AgeLYseefY~El~RiLk-------r 237 (287)
T COG2521 188 KIILGDAYEVVKDFDDESFDAIIH---------DPPRFS------------L--AGELYSEEFYRELYRILK-------R 237 (287)
T ss_pred EEecccHHHHHhcCCccccceEee---------CCCccc------------h--hhhHhHHHHHHHHHHHcC-------c
Confidence 346788888 6799999999875 244332 1 124677666666655555 9
Q ss_pred CCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccC
Q 024331 211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVT 250 (269)
Q Consensus 211 GG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~ 250 (269)
||+|+=-. |.+.. .+-+ -+.-..+.+.|.+.|.
T Consensus 238 gGrlFHYv-G~Pg~-ryrG-----~d~~~gVa~RLr~vGF 270 (287)
T COG2521 238 GGRLFHYV-GNPGK-RYRG-----LDLPKGVAERLRRVGF 270 (287)
T ss_pred CCcEEEEe-CCCCc-cccc-----CChhHHHHHHHHhcCc
Confidence 99997644 22211 1111 1345566667777777
No 205
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=61.38 E-value=16 Score=31.97 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
.++++|...|||||-=.-.++--+-+...+. ..-.++|+.+|+...
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~------~~~~~~I~atDi~~~ 75 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGA------LGWDFRILATDISPS 75 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-------TT-SEEEEEEES-HH
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhccc------CCCceEEEEEECCHH
Confidence 3689999999999976554443333322211 122699999998653
No 206
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=60.25 E-value=20 Score=32.83 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=27.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDL 97 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL 97 (269)
...+|+|-.||+|...+..+..+.+.-.+ .++.+++..|+
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei 85 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEI 85 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecC
Confidence 35789999999998876666444433111 25799999887
No 207
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=60.16 E-value=4.9 Score=32.12 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=14.7
Q ss_pred EEEeecCCCCcccHHHH
Q 024331 53 AIADLGCSSGPNTLLVA 69 (269)
Q Consensus 53 ~IaD~GCs~G~Ns~~~~ 69 (269)
+|+|+||+.|..++.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999999887766
No 208
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=60.04 E-value=14 Score=34.63 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 191 EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 191 ~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
.+-...++.+|..=..-|+|||+|++..+-.-
T Consensus 209 N~El~~L~~~L~~~~~~L~~gGrl~visfHSl 240 (296)
T PRK00050 209 NDELEELERALEAALDLLKPGGRLAVISFHSL 240 (296)
T ss_pred HhhHHHHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 34456788888888888999999998876443
No 209
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=59.99 E-value=17 Score=33.44 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=39.9
Q ss_pred ceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHH
Q 024331 51 KVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIF 106 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF 106 (269)
.-+|+++|+|.|.-|..+++. ++..++++. .....++|+..|-=.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhc
Confidence 579999999999999988864 334444442 2346799999999888888764
No 210
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=58.77 E-value=13 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 193 FQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 193 ~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
...-+.+|++.=.+-|+|||+|++=--.+.
T Consensus 19 GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~ 48 (110)
T PF06859_consen 19 GDEGLKRFFRRIYSLLRPGGILILEPQPWK 48 (110)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEE---HH
T ss_pred cCHHHHHHHHHHHHhhCCCCEEEEeCCCcH
Confidence 567788888888889999999999655543
No 211
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=57.67 E-value=1.8e+02 Score=27.90 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=33.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCc
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGND 101 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~ND 101 (269)
+.+.|+|||.+.|..=. .+|+++.++. ..+|.+.|...+.|...
T Consensus 110 ~~vHIID~~i~~G~QW~----~LiqaLa~R~----~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWP----SLIQALASRP----GGPPSLRITGIGPPNSG 153 (374)
T ss_pred cceEEEeccCCcchHHH----HHHHHHhcCC----CCCCeEEEEeccCCCCC
Confidence 57999999999996544 4556666542 35789999999998764
No 212
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=56.88 E-value=18 Score=37.15 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=57.2
Q ss_pred CCceeeEeccc-----------cccccccCCCCCCCCCcceEEcCCCCHHHHH------HHHHHHHHHHHHHHhhhhhhh
Q 024331 146 RNSVHLFHSSY-----------SLQWLSQVPDGLESNKGNIFMASTSPPCVLT------AYYEQFQRDFSLFLKCRSEEL 208 (269)
Q Consensus 146 ~~Svd~~~Ss~-----------alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~------ay~~Q~~~D~~~FL~~Ra~EL 208 (269)
-+|+|++..+- +--+||++-+.+. ---|++.+.+|++|.+ +|++||+||.--=|.|=.|
T Consensus 352 GGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~--~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRr-- 427 (913)
T KOG0451|consen 352 GGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQ--APVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRR-- 427 (913)
T ss_pred cceEEEEecccccccCcccccccchhhhHHHHHhC--CCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHH--
Confidence 36788876531 1223444443332 2337788888888766 5889999997666665444
Q ss_pred ccCCeEEEEecccCC-CCCCChhhhHHHHHHH-------HHHHHHHHccCccccccc
Q 024331 209 VAEGRMVLTFLGRKS-QDPSSKECCYIWELLA-------TALNNMVSEVTKSFLLLI 257 (269)
Q Consensus 209 ~pGG~lv~~~~g~~~-~~~~~~~~~~~~~~l~-------~~l~~mv~eG~i~~~~~d 257 (269)
.|.++ ++|.. .+-.+|+-++ .-+..|++||+++||++-
T Consensus 428 ----------wgHnelddp~f-tspvmyk~v~aReSvPdlya~~L~~eg~~tee~vk 473 (913)
T KOG0451|consen 428 ----------WGHNELDDPTF-TSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVK 473 (913)
T ss_pred ----------hccccccCccc-cChhHHHHHHhhhcccHHHHHHHHhcccccHHHHH
Confidence 34443 23332 2222343222 236789999999999864
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=53.73 E-value=42 Score=30.26 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=36.2
Q ss_pred CceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCcceEEecCCCCCchHH
Q 024331 50 TKVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNT 104 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFnt 104 (269)
+...|+|+|.|.|.-|..+.+. .++.+++++. ..+.+++++.|.-.=|...
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGG
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHH
Confidence 4689999999999999988754 3455555431 3567888888876655554
No 214
>PHA03297 envelope glycoprotein L; Provisional
Probab=52.97 E-value=2.2 Score=36.16 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=44.6
Q ss_pred CCceEEEeecCCCCcc------cHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHH
Q 024331 49 PTKVAIADLGCSSGPN------TLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ 113 (269)
Q Consensus 49 ~~~~~IaD~GCs~G~N------s~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~ 113 (269)
.+|.||++.-||+|+- |...++++.+.+....-+..+++||+-+.+.|-+..=+-.=|-.+..+.
T Consensus 38 gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~~CsPPEaILW~~~~~~aYWvNPyvviqGLA 108 (185)
T PHA03297 38 GEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKAHCNPPEAILWVDTPPKPVWVNPFAVIQGLA 108 (185)
T ss_pred CCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEecCCCCceeEEEecCCCceEEecHHHHHHHHH
Confidence 4789999999999985 2344566666655544344468999999999987655544445454443
No 215
>PLN02823 spermine synthase
Probab=52.58 E-value=74 Score=30.25 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.5
Q ss_pred CCCceEEEeecCCCCcccHHHH
Q 024331 48 SPTKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~ 69 (269)
.+++.+|+-+|+|.|..+..++
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHH
Confidence 3467899999999996655444
No 216
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=50.58 E-value=11 Score=33.12 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=25.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDL 97 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL 97 (269)
++-+|+++||++|..|+.++ +.. ++.-+|+-.|.
T Consensus 45 ~~k~vLEIGt~~GySal~la--------~~l------~~~g~i~tiE~ 78 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLA--------EAL------PEDGKITTIEI 78 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHH--------HTS------TTTSEEEEEES
T ss_pred CCceEEEeccccccHHHHHH--------Hhh------cccceEEEecC
Confidence 46899999999999999888 431 23467777775
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=50.36 E-value=19 Score=35.88 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
...+|+|.+||+|...+.++..+. +. .....-+.+++..|.-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~----~~---~~~~~~~~~i~g~DId~~ 74 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNE----EI---NYFKEVELNIYFADIDKT 74 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHH----hc---CCcccceeeeeeechhHH
Confidence 568999999999998777764431 11 001113577888887554
No 218
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=49.22 E-value=30 Score=30.88 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=25.7
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP 98 (269)
+..+|+|.||+.|.=|...+ +++ .|.--|+..||-
T Consensus 69 p~~~VlD~G~APGsWsQVav--------qr~------~p~g~v~gVDll 103 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAV--------QRV------NPNGMVLGVDLL 103 (232)
T ss_pred CCCEEEEccCCCChHHHHHH--------Hhh------CCCceEEEEeee
Confidence 46899999999998887666 554 255667777753
No 219
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=48.04 E-value=10 Score=34.12 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=14.9
Q ss_pred CceEEEeecCCCCcccHHH
Q 024331 50 TKVAIADLGCSSGPNTLLV 68 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~ 68 (269)
+...+||+|||=|...+.+
T Consensus 60 ~kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKL 78 (249)
T ss_pred ccceEEeeccCccchhhhc
Confidence 3478999999999776544
No 220
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=47.34 E-value=2.1e+02 Score=29.90 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=16.2
Q ss_pred CceEEEeecCCCCcccHHHH
Q 024331 50 TKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~ 69 (269)
....++|-+||+|...+..+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa 209 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAA 209 (702)
T ss_pred CCCeEEccCCCccHHHHHHH
Confidence 35789999999998877554
No 221
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=46.26 E-value=24 Score=24.34 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHccCccccc
Q 024331 234 IWELLATALNNMVSEVTKSFLL 255 (269)
Q Consensus 234 ~~~~l~~~l~~mv~eG~i~~~~ 255 (269)
+-..|.++|+||+.+|.|+++.
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 4468999999999999999764
No 222
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=45.63 E-value=22 Score=32.73 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
..+|+|+-+|.|.-|..++ +.. ...-.|+.+|.-.+
T Consensus 86 ~~~VLD~CAapGgKt~~la--------~~~------~~~g~i~A~D~~~~ 121 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLA--------ELM------GNKGEIVANDISPK 121 (283)
T ss_dssp TSEEEESSCTTSHHHHHHH--------HHT------TTTSEEEEEESSHH
T ss_pred cccccccccCCCCceeeee--------ecc------cchhHHHHhccCHH
Confidence 4679999999999998777 543 12578999998776
No 223
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=41.73 E-value=28 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCe
Q 024331 187 TAYYEQFQRDFSLFLKCRSEELVAEGR 213 (269)
Q Consensus 187 ~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 213 (269)
+++++-|..||..++..+.++||.-|+
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 477778889999999999999998664
No 224
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=40.34 E-value=27 Score=30.77 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=25.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N 100 (269)
+.-+|+|+-||.|+.|+.++ +.. +.-.|+.+|+-..
T Consensus 101 ~~e~VlD~faGIG~f~l~~a--------k~~-------~~~~V~A~d~Np~ 136 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIA--------KHG-------KAKRVYAVDLNPD 136 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHH--------HHT--------SSEEEEEES-HH
T ss_pred cceEEEEccCCccHHHHHHh--------hhc-------CccEEEEecCCHH
Confidence 35799999999999999877 421 2367999998554
No 225
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=39.57 E-value=16 Score=31.31 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=14.2
Q ss_pred CceEEEeecCCCCcccH
Q 024331 50 TKVAIADLGCSSGPNTL 66 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~ 66 (269)
+..+++|+|||+|--++
T Consensus 48 Egkkl~DLgcgcGmLs~ 64 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI 64 (185)
T ss_pred cCcchhhhcCchhhhHH
Confidence 56899999999997663
No 226
>PRK11524 putative methyltransferase; Provisional
Probab=38.98 E-value=92 Score=28.45 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=15.8
Q ss_pred HHHHHhhhhhhhccCCeEEEE
Q 024331 197 FSLFLKCRSEELVAEGRMVLT 217 (269)
Q Consensus 197 ~~~FL~~Ra~EL~pGG~lv~~ 217 (269)
+..+|+.=.+-|+|||.|++.
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEE
Confidence 445555556789999999985
No 227
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=37.42 E-value=1.5e+02 Score=25.08 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC----CcceEEecCCCCCchHHHHHh
Q 024331 33 KPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQL----PEFQVFLNDLPGNDFNTIFRS 108 (269)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~----p~~qv~~nDLP~NDFntLF~~ 108 (269)
.|-|-.++..+.. ..+.-+|+|-=||+|.-.+..+ .... +..+ -+.+++..|.-.. .+
T Consensus 13 ~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa-------~~~~---~~~~~~~~~~~~~~g~Di~~~---~v--- 74 (179)
T PF01170_consen 13 RPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAA-------LMGA---NIPPLNDINELKIIGSDIDPK---AV--- 74 (179)
T ss_dssp -HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHH-------HHHT---TTSTTTH-CH--EEEEESSHH---HH---
T ss_pred CHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHH-------HHhh---CcccccccccccEEecCCCHH---HH---
Confidence 3444444444432 1234689999999997644333 1110 0010 0345888886544 11
Q ss_pred hHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEec
Q 024331 109 LASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHS 154 (269)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~S 154 (269)
..-..-+. ..+.. ..+ .-.-++|....++++++|.+++
T Consensus 75 -~~a~~N~~-~ag~~----~~i--~~~~~D~~~l~~~~~~~d~Ivt 112 (179)
T PF01170_consen 75 -RGARENLK-AAGVE----DYI--DFIQWDARELPLPDGSVDAIVT 112 (179)
T ss_dssp -HHHHHHHH-HTT-C----GGE--EEEE--GGGGGGTTSBSCEEEE
T ss_pred -HHHHHHHH-hcccC----Cce--EEEecchhhcccccCCCCEEEE
Confidence 11001011 11211 122 2233788888889999999999
No 228
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=37.30 E-value=29 Score=30.40 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHccCcccccccceec
Q 024331 234 IWELLATALNNMVSEVTKSFLLLIVFNQ 261 (269)
Q Consensus 234 ~~~~l~~~l~~mv~eG~i~~~~~d~Fnl 261 (269)
+...+.++|.+||++|+++-|++.+-|+
T Consensus 41 Vl~tVKd~lQqlVDDgvV~~EK~GtsN~ 68 (209)
T COG5124 41 VLMTVKDLLQQLVDDGVVSVEKCGTSNI 68 (209)
T ss_pred HHHHHHHHHHHHhhcCceeeeeecccee
Confidence 3467899999999999999999999886
No 229
>smart00400 ZnF_CHCC zinc finger.
Probab=37.22 E-value=29 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 024331 51 KVAIADLGCSSGPNTLLVASE 71 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ 71 (269)
.-..=++||+.|.+.+.++..
T Consensus 21 kn~~~Cf~cg~gGd~i~fv~~ 41 (55)
T smart00400 21 KQFFHCFGCGAGGNVISFLMK 41 (55)
T ss_pred CCEEEEeCCCCCCCHHHHHHH
Confidence 345778999999999888843
No 230
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=35.92 E-value=1.2e+02 Score=28.50 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=67.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (269)
Q Consensus 52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (269)
....=-|+|||.....+. ..++++ .|.++++..|=..-.+ +.. |. .+..
T Consensus 170 ~d~fVagvGTGGTitGva----r~Lk~~-------~p~i~iv~vdP~~S~~------~~~---------G~-----g~~~ 218 (300)
T COG0031 170 VDAFVAGVGTGGTITGVA----RYLKER-------NPNVRIVAVDPEGSVL------LSG---------GE-----GPHK 218 (300)
T ss_pred CCEEEEeCCcchhHHHHH----HHHHhh-------CCCcEEEEECCCCCcc------cCC---------CC-----CCcc
Confidence 455556999998765554 445554 3779999999655422 100 11 2566
Q ss_pred EeecCCCccCCCCCCCceeeEec------cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331 132 FTGVPGSFYGRLFPRNSVHLFHS------SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (269)
Q Consensus 132 ~~~vpgSFy~~lfP~~Svd~~~S------s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 205 (269)
+-+++.+|--..+-..-+|-++. ....++|.+ +.-+.+-.+|-..+..|..- +
T Consensus 219 i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~--------~eGilvG~SsGA~~~aa~~~-------------a 277 (300)
T COG0031 219 IEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAR--------EEGLLVGISSGAALAAALKL-------------A 277 (300)
T ss_pred cCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHH--------HhCeeecccHHHHHHHHHHH-------------H
Confidence 77788887765555555555553 223334333 23344444444444444322 7
Q ss_pred hhhccCCeEEEEecc
Q 024331 206 EELVAEGRMVLTFLG 220 (269)
Q Consensus 206 ~EL~pGG~lv~~~~g 220 (269)
+++.+|+.+|+.++-
T Consensus 278 ~~~~~g~~IVti~pD 292 (300)
T COG0031 278 KELPAGKTIVTILPD 292 (300)
T ss_pred HhcCCCCeEEEEECC
Confidence 888888888887753
No 231
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.99 E-value=27 Score=30.42 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHccCcccccccceec
Q 024331 236 ELLATALNNMVSEVTKSFLLLIVFNQ 261 (269)
Q Consensus 236 ~~l~~~l~~mv~eG~i~~~~~d~Fnl 261 (269)
-.+.+++..||+||+|.-|++.+-|+
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~ 55 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNY 55 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeE
Confidence 46899999999999999999999885
No 232
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=34.94 E-value=34 Score=31.96 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=22.0
Q ss_pred HHHHHHHHH-HhhcccCCCCceEEEeecCCCCcccHHHH
Q 024331 32 AKPITEEAM-TKLFCSTSPTKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 32 ~~~~l~~ai-~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~ 69 (269)
+.+.+.+++ .++ .-.--||+||||++|--.+...
T Consensus 101 l~~~l~~e~~~~~----~~~~k~vLELgCg~~Lp~i~~~ 135 (282)
T KOG2920|consen 101 LLPYLKEEIGAQM----SFSGKRVLELGCGAALPGIFAF 135 (282)
T ss_pred HHHHHHHHhhhhe----EecCceeEecCCcccccchhhh
Confidence 556666655 222 2234699999999997766544
No 233
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=34.49 E-value=48 Score=28.72 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=40.7
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF 132 (269)
Q Consensus 53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~ 132 (269)
+|+|+|+|-|-=.+.+. .. .|+.++++.|--.- -. .|.+....+.+. .++.+
T Consensus 51 ~~lDiGSGaGfPGipLa---------I~------~p~~~~~LvEs~~K-------K~-~FL~~~~~~L~L-----~nv~v 102 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLA---------IA------RPDLQVTLVESVGK-------KV-AFLKEVVRELGL-----SNVEV 102 (184)
T ss_dssp EEEEETSTTTTTHHHHH---------HH-------TTSEEEEEESSHH-------HH-HHHHHHHHHHT------SSEEE
T ss_pred eEEecCCCCCChhHHHH---------Hh------CCCCcEEEEeCCch-------HH-HHHHHHHHHhCC-----CCEEE
Confidence 89999999997766544 21 27788888883322 11 122223333343 24444
Q ss_pred eecCCCccCCCCCCCceeeEec
Q 024331 133 TGVPGSFYGRLFPRNSVHLFHS 154 (269)
Q Consensus 133 ~~vpgSFy~~lfP~~Svd~~~S 154 (269)
.. +-... .....++|+++|
T Consensus 103 ~~--~R~E~-~~~~~~fd~v~a 121 (184)
T PF02527_consen 103 IN--GRAEE-PEYRESFDVVTA 121 (184)
T ss_dssp EE--S-HHH-TTTTT-EEEEEE
T ss_pred EE--eeecc-cccCCCccEEEe
Confidence 42 44444 677889999999
No 234
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=34.06 E-value=25 Score=21.58 Aligned_cols=18 Identities=11% Similarity=-0.125 Sum_probs=15.3
Q ss_pred HHHHHHHHccCccccccc
Q 024331 240 TALNNMVSEVTKSFLLLI 257 (269)
Q Consensus 240 ~~l~~mv~eG~i~~~~~d 257 (269)
..|++|-+.|.||+++..
T Consensus 6 ~~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHHcCCCCHHHHH
Confidence 468899999999999864
No 235
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=33.29 E-value=17 Score=28.69 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=9.3
Q ss_pred EEeecCCCCcccHH
Q 024331 54 IADLGCSSGPNTLL 67 (269)
Q Consensus 54 IaD~GCs~G~Ns~~ 67 (269)
=+|+||| |.||+.
T Consensus 6 NIDIGcG-~GNTmd 18 (124)
T PF07101_consen 6 NIDIGCG-AGNTMD 18 (124)
T ss_pred ccccccC-CCcchh
Confidence 3699999 556663
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.53 E-value=2.3e+02 Score=25.62 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceec
Q 024331 193 FQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQ 261 (269)
Q Consensus 193 ~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~Fnl 261 (269)
+...-..||+ +||.+++++-.|.-+.... .. +.+++.+..|.+.|+ +.++..+|
T Consensus 162 ~~~Na~~FLk-------~~G~~~i~iKArSIdvT~d--p~---~vf~~ev~kL~~~~f---~i~e~~~L 215 (231)
T COG1889 162 LADNAEFFLK-------KGGYVVIAIKARSIDVTAD--PE---EVFKDEVEKLEEGGF---EILEVVDL 215 (231)
T ss_pred HHHHHHHhcc-------cCCeEEEEEEeecccccCC--HH---HHHHHHHHHHHhcCc---eeeEEecc
Confidence 4566677887 9999999998886432222 11 467788888999985 44444444
No 237
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=31.84 E-value=3e+02 Score=27.70 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=19.3
Q ss_pred CCccCCCCCCCceeeEecccccc
Q 024331 137 GSFYGRLFPRNSVHLFHSSYSLQ 159 (269)
Q Consensus 137 gSFy~~lfP~~Svd~~~Ss~alH 159 (269)
.+.+...||+.|+|++.-=-+++
T Consensus 103 ~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 103 MDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred ecchhccCCCcceeEEEecCccc
Confidence 78899999999999999844444
No 238
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=31.74 E-value=82 Score=27.80 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHHccCccccc
Q 024331 191 EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEVTKSFLL 255 (269)
Q Consensus 191 ~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~----~~l~~~l~~mv~eG~i~~~~ 255 (269)
.|...+++.-+. . +++||.+| |+..+-+..| ..+.+|+++|++||+|....
T Consensus 15 ~qi~~~L~~~I~--~-~~~~G~~L-----------PsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~ 69 (241)
T PRK10079 15 QEIAAKLEQELR--Q-HYRCGDYL-----------PAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQ 69 (241)
T ss_pred HHHHHHHHHHHh--c-ccCCCCcC-----------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 556777877775 5 89998764 2222222223 47999999999999987654
No 239
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=31.22 E-value=41 Score=29.20 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=17.1
Q ss_pred HHHHHHhhhhhhhccCCeEEEEeccc
Q 024331 196 DFSLFLKCRSEELVAEGRMVLTFLGR 221 (269)
Q Consensus 196 D~~~FL~~Ra~EL~pGG~lv~~~~g~ 221 (269)
|++..++. .+.|||||+|+++++--
T Consensus 90 dl~~m~~i-~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 90 DLRAMAKI-KCVLKPGGLLFLGVPVG 114 (177)
T ss_pred cHHHHHHH-HHhhccCCeEEEEeecC
Confidence 44444443 36788999999999843
No 240
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=30.43 E-value=44 Score=25.45 Aligned_cols=34 Identities=9% Similarity=-0.126 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHccCcccccccceeccccccc
Q 024331 234 IWELLATALNNMVSEVTKSFLLLIVFNQLNYKLK 267 (269)
Q Consensus 234 ~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~ 267 (269)
+...+..+|+.|-..|.|++++-|....|++-+-
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~s 45 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPS 45 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChH
Confidence 3467899999999999999999999999987653
No 241
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=29.85 E-value=43 Score=33.62 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=22.8
Q ss_pred HHHHHHhhcccCCCCceEEEeecCCCCcccHHHHH
Q 024331 36 TEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVAS 70 (269)
Q Consensus 36 l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 70 (269)
|+++|.+..........-++|+|.|||--|+..+.
T Consensus 52 i~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvr 86 (636)
T KOG1501|consen 52 IEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVR 86 (636)
T ss_pred HHHHhcccceeccCceEEEEEccCCccHHHHHHHH
Confidence 34444443322234568899999999998886554
No 242
>PRK13699 putative methylase; Provisional
Probab=29.62 E-value=50 Score=29.41 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=10.9
Q ss_pred CCCCCceeeEec
Q 024331 143 LFPRNSVHLFHS 154 (269)
Q Consensus 143 lfP~~Svd~~~S 154 (269)
-+|++|||++++
T Consensus 15 ~lpd~SVDLIiT 26 (227)
T PRK13699 15 RFPDNAVDFILT 26 (227)
T ss_pred hCCccccceEEe
Confidence 579999999998
No 243
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=29.14 E-value=68 Score=28.65 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=14.2
Q ss_pred CceEEEeecCCCCcccHHHH
Q 024331 50 TKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~ 69 (269)
.+++|+++|.|+|..+.-++
T Consensus 18 ~~~~ivE~GaG~G~La~diL 37 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDIL 37 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHH
Confidence 36999999999997655444
No 244
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=28.90 E-value=93 Score=27.20 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHHccCccccc-cccee
Q 024331 192 QFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEVTKSFLL-LIVFN 260 (269)
Q Consensus 192 Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~----~~l~~~l~~mv~eG~i~~~~-~d~Fn 260 (269)
|...++..-+. ..+++||..| |+..+-+..| ..+.+|+++|++||+|.... ..+|.
T Consensus 4 qi~~~l~~~I~--~g~~~~G~~L-----------PsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G~GTfV 64 (233)
T TIGR02404 4 QIYQDLEQKIT--HGQYKEGDYL-----------PSEHELMDQYGASRETVRKALNLLTEAGYIQKIQGKGSIV 64 (233)
T ss_pred HHHHHHHHHHH--hCCCCCCCCC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCceEEE
Confidence 44555555555 5677776543 2222222223 47999999999999998766 45564
No 245
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=28.73 E-value=3e+02 Score=23.97 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=40.6
Q ss_pred chHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcc---cHHHHHHHHHHHHHHHHhcCCCCCcce
Q 024331 16 TSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPN---TLLVASELIKVVNKICDKLGSQLPEFQ 91 (269)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~N---s~~~~~~ii~~i~~~~~~~~~~~p~~q 91 (269)
..|......|.++++...+.++++...+....+.. -+|+= ||.|.. +..++.+++ .||+..-++.|.+-
T Consensus 7 ~~~~es~~~~~~~~~~l~~~I~~aa~~i~~~l~~G-~Kvl~--cGNGgSaadAqHfaael~----gRf~~eR~~lpaIa 78 (176)
T COG0279 7 SEFTESIQTQIAALEALIEAIERAAQLLVQSLLNG-NKVLA--CGNGGSAADAQHFAAELT----GRFEKERPSLPAIA 78 (176)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEE--ECCCcchhhHHHHHHHHh----hHHHhcCCCCCeeE
Confidence 45888888888888777888888777665433322 33433 666654 445555554 44443334445333
No 246
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=28.59 E-value=1.7e+02 Score=21.40 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=31.7
Q ss_pred ecCCCCcccHHHHHHHHHHHHHHH-HhcCCCCCcceEEecCCCCCch
Q 024331 57 LGCSSGPNTLLVASELIKVVNKIC-DKLGSQLPEFQVFLNDLPGNDF 102 (269)
Q Consensus 57 ~GCs~G~Ns~~~~~~ii~~i~~~~-~~~~~~~p~~qv~~nDLP~NDF 102 (269)
+=|--|+.+-..-+.+++.|.+.. +.+|.++..+.|+++|.|..|+
T Consensus 6 Ik~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~w 52 (69)
T COG1942 6 IKLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPENW 52 (69)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhhe
Confidence 334457777765556666665542 2356778889999999999866
No 247
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=27.01 E-value=1.4e+02 Score=26.71 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=22.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecC
Q 024331 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLND 96 (269)
Q Consensus 51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nD 96 (269)
..+++|+|+|.|-=.+.++ |- .|+.+|.+-|
T Consensus 68 ~~~~~DIGSGaGfPGipLA------I~---------~p~~~vtLle 98 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA------IA---------FPDLKVTLLE 98 (215)
T ss_pred CCEEEEeCCCCCCchhhHH------Hh---------ccCCcEEEEc
Confidence 5899999999998777554 11 2667777766
No 248
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=26.98 E-value=3.3e+02 Score=21.77 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcccCCCCceEEEeecC
Q 024331 33 KPITEEAMTKLFCSTSPTKVAIADLGC 59 (269)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaD~GC 59 (269)
..-+.+.+..++.........+.||||
T Consensus 27 ~~sI~~~L~~LLnTr~g~~~~~~~yGl 53 (133)
T TIGR03357 27 RESIRRHLERLLNTRRGSCASLPDYGL 53 (133)
T ss_pred HHHHHHHHHHHHccCCCccccccccCC
Confidence 333444445555444566789999999
No 249
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=26.42 E-value=1.2e+02 Score=26.36 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHHccCccccc-cccee
Q 024331 192 QFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEVTKSFLL-LIVFN 260 (269)
Q Consensus 192 Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~----~~l~~~l~~mv~eG~i~~~~-~d~Fn 260 (269)
|-..+++.-+. +.|++||-.| |+..+-+..| ..+.+||..|++||+|.... ..+|-
T Consensus 5 qi~~~l~~~I~--~g~~~~g~~L-----------PsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~GtfV 65 (230)
T TIGR02018 5 RIKQDILERIR--SGEWPPGHRI-----------PSEHELVAQYGCSRMTVNRALRELTDAGLLERRQGVGTFV 65 (230)
T ss_pred HHHHHHHHHHH--hCCCCCCCcC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCEEEE
Confidence 45566666555 6778787653 2222222222 46999999999999987655 34454
No 250
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=26.27 E-value=83 Score=30.37 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=34.6
Q ss_pred CCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHH
Q 024331 14 GGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVAS 70 (269)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~ 70 (269)
+...||-.+.+-|...-.+.....+.. .....++|+|+-||+|.-++..++
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~------~~~~~~~vLD~faGsG~rgir~a~ 64 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLY------GKECYINIADALSASGIRAIRYAH 64 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhh------CCcCCCEEEECCCchhHHHHHHHh
Confidence 567899888887776555443332210 011258999999999999988773
No 251
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=25.56 E-value=38 Score=29.88 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=25.2
Q ss_pred EEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331 54 IADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF 102 (269)
Q Consensus 54 IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF 102 (269)
|||+||=+|.-.+.++ ++ ...-.+++.|+-.+=+
T Consensus 1 vaDIGtDHgyLpi~L~--------~~-------~~~~~~ia~DI~~gpL 34 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLL--------KN-------GKAPKAIAVDINPGPL 34 (205)
T ss_dssp EEEET-STTHHHHHHH--------HT-------TSEEEEEEEESSHHHH
T ss_pred CceeccchhHHHHHHH--------hc-------CCCCEEEEEeCCHHHH
Confidence 7999999999988887 43 2345688999887633
No 252
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=25.08 E-value=99 Score=21.35 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHHHHHHHH-hcCCCCCcceEEecCCCCCch
Q 024331 62 GPNTLLVASELIKVVNKICD-KLGSQLPEFQVFLNDLPGNDF 102 (269)
Q Consensus 62 G~Ns~~~~~~ii~~i~~~~~-~~~~~~p~~qv~~nDLP~NDF 102 (269)
|+ |-.-.+.+++.|.+... ..+.++..+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhhe
Confidence 44 45445555555555432 245567789999999988744
No 253
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=24.56 E-value=62 Score=25.92 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHccCccccc
Q 024331 235 WELLATALNNMVSEVTKSFLL 255 (269)
Q Consensus 235 ~~~l~~~l~~mv~eG~i~~~~ 255 (269)
-..|.++|.||+.+|.|+...
T Consensus 13 G~~L~~tLDe~v~~g~itp~l 33 (109)
T KOG3463|consen 13 GNALQKTLDELVSDGVITPSL 33 (109)
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 357999999999999999764
No 254
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=1.5e+02 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.3
Q ss_pred CCCceEEEeecCCCCcccHHHH
Q 024331 48 SPTKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~ 69 (269)
..+..+|+||||+.|.=|..+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~ 64 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAA 64 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHH
Confidence 3456899999999999887666
No 255
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=69 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=17.1
Q ss_pred CCCceEEEeecCCCCcccHHHH
Q 024331 48 SPTKVAIADLGCSSGPNTLLVA 69 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~ 69 (269)
...-.+++|+|.|||+-|.-+.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFA 101 (237)
T ss_pred hccCcceeecCCCccHHHHHHH
Confidence 3346899999999999876544
No 256
>KOG3790 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.48 E-value=70 Score=31.91 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=16.5
Q ss_pred CceEEEeecCCCCcccHHHHHHHH
Q 024331 50 TKVAIADLGCSSGPNTLLVASELI 73 (269)
Q Consensus 50 ~~~~IaD~GCs~G~Ns~~~~~~ii 73 (269)
.|..-+|+||+.| ++..+.+.+
T Consensus 211 ~p~~f~d~gcgng--llvhllna~ 232 (529)
T KOG3790|consen 211 KPNKFVDIGCGNG--LLVHLLNAI 232 (529)
T ss_pred cccchhccccCch--hHHHHHHHH
Confidence 6889999999999 555554444
No 257
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=23.33 E-value=1.4e+02 Score=25.92 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHHccCccccc-cccee
Q 024331 191 EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEVTKSFLL-LIVFN 260 (269)
Q Consensus 191 ~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~----~~l~~~l~~mv~eG~i~~~~-~d~Fn 260 (269)
.|-..+++.-+. +.|++||-.| |+..+-+..| ..+.+||++|++||+|.... ..+|-
T Consensus 11 ~~i~~~l~~~I~--~g~~~~G~~L-----------PsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G~GtfV 72 (238)
T TIGR02325 11 RQIADKIEQEIA--AGHLRAGDYL-----------PAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQGRGTFV 72 (238)
T ss_pred HHHHHHHHHHHH--cCCCCCCCcC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCEEEE
Confidence 445566666665 5677776543 2222222223 47999999999999998654 34444
No 258
>PRK14999 histidine utilization repressor; Provisional
Probab=22.68 E-value=1.5e+02 Score=26.13 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHHccCccccc-cccee
Q 024331 191 EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEVTKSFLL-LIVFN 260 (269)
Q Consensus 191 ~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~----~~l~~~l~~mv~eG~i~~~~-~d~Fn 260 (269)
.|-..+++.-+. ..+++||.+| |+..+-+..| ..+.+||++|++||+|.... ..+|-
T Consensus 15 ~qi~~~i~~~I~--~g~~~~G~~L-----------PsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~GkGTfV 76 (241)
T PRK14999 15 ETVKQDICKKIA--GGVWQPHDRI-----------PSEAELVAQYGFSRMTINRALRELTDEGWLVRLQGVGTFV 76 (241)
T ss_pred HHHHHHHHHHHH--cCCCCCCCcC-----------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCcEEEE
Confidence 456677777666 6677777653 2222222223 47999999999999997654 45554
No 259
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=22.52 E-value=3.4e+02 Score=25.72 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=24.8
Q ss_pred eccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcc
Q 024331 8 HMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPN 64 (269)
Q Consensus 8 ~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~N 64 (269)
|+--|.+..++......|++++..+..++++ ..-.++++|+|.|-|-+
T Consensus 191 h~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~idiGGG~~v~ 238 (398)
T TIGR03099 191 HIFAGSQNLNAEAIIEAQAKTLALALRLAES---------APAPVRVINIGGGFGIP 238 (398)
T ss_pred EecccccCCCHHHHHHHHHHHHHHHHHHHHH---------hCCCCCEEEeCCcccCC
Confidence 3333434444444444455555444444332 12246799999998743
No 260
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=22.38 E-value=93 Score=25.65 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCccccccc
Q 024331 182 PPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLI 257 (269)
Q Consensus 182 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d 257 (269)
+..+.+.|++||++||-..|+.|..+=+...--|-.-.-.+-+. ..-+..-|..|..=+.-|-.+|++.-++-+
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~krV~AN~vYnEyI~Dk~H--vHMNaT~W~sLT~FvkyLgr~G~~~Vdete 83 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGTKRVNANKVYNEYIQDKDH--VHMNATRWTSLTEFVKYLGREGKCKVDETE 83 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS-EEEHHHHHHHHTTSS------GGGSS-SSHHHHHHHHTTTTSEEEEEET
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCeechhHHHHHHhcCccc--eeecccccchHHHHHHHHhhCCeeEeecCC
Confidence 44567899999999999999987655332111111111111111 111233478888889999999987655544
No 261
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=21.75 E-value=1.1e+02 Score=21.11 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCC
Q 024331 186 LTAYYEQFQRDFSLFLKCRSEELVAEG 212 (269)
Q Consensus 186 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 212 (269)
.|.|.+.|++|-...|++|.+-++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 468999999999999999998776543
No 262
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=21.67 E-value=1.1e+02 Score=27.48 Aligned_cols=48 Identities=29% Similarity=0.617 Sum_probs=28.7
Q ss_pred cCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 024331 135 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLK 202 (269)
Q Consensus 135 vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 202 (269)
-||.+|+..||.+-+- +|..|.+ +.|-+...++ +-.+|..+|..+||.
T Consensus 133 ~~~~~~N~~fpg~~ia-------------MP~~L~~--~~v~y~dGt~-----at~~q~a~DVv~FL~ 180 (219)
T PF02167_consen 133 RPGGYYNPYFPGGAIA-------------MPPPLSD--GQVEYDDGTP-----ATVDQMAKDVVNFLA 180 (219)
T ss_dssp STTSEEETTSTTSEES-------------S--TSST--TSS-BTTTB--------HHHHHHHHHHHHH
T ss_pred CCCCccccccCCCccc-------------chhhhhh--hcccccCCCc-----chHHHHHHHHHHHHH
Confidence 5677888888775442 4666763 3443333333 446889999999998
No 263
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=21.29 E-value=1.6e+02 Score=28.70 Aligned_cols=28 Identities=18% Similarity=0.612 Sum_probs=20.5
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 024331 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKI 79 (269)
Q Consensus 48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~ 79 (269)
.|.++.|+.+|.|+|.. ++.++.++++.
T Consensus 75 ~p~~~~lvEiGaG~G~l----~~DiL~~l~~L 102 (370)
T COG1565 75 RPAPLKLVEIGAGRGTL----ASDILRTLRRL 102 (370)
T ss_pred CCCCceEEEeCCCcChH----HHHHHHHHHHh
Confidence 56789999999999964 45555555444
No 264
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=21.05 E-value=59 Score=29.14 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHH-------HHHHHHhcC---CCCCcceEEecCCCCCch
Q 024331 34 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKV-------VNKICDKLG---SQLPEFQVFLNDLPGNDF 102 (269)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~-------i~~~~~~~~---~~~p~~qv~~nDLP~NDF 102 (269)
.+..+||.+.-+ -+++|+|.|+|.-|+......-.. -+.+|.+.+ ...-+++|+-.|-..=||
T Consensus 22 avF~~ai~~va~------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 22 AVFTSAIAEVAE------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred HHHHHHHHHHhh------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence 344555554422 578999999999998776543211 122333333 123478999999999999
No 265
>PF14044 NETI: NETI protein
Probab=20.91 E-value=68 Score=22.81 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHccCcc
Q 024331 236 ELLATALNNMVSEVTKS 252 (269)
Q Consensus 236 ~~l~~~l~~mv~eG~i~ 252 (269)
+.++++|..|..+|+.+
T Consensus 8 ETI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 8 ETISDCLARMKKEGYMP 24 (57)
T ss_pred CcHHHHHHHHHHcCCCc
Confidence 46999999999999954
No 266
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=20.90 E-value=95 Score=26.71 Aligned_cols=29 Identities=17% Similarity=-0.042 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHccCcccccccceec
Q 024331 233 YIWELLATALNNMVSEVTKSFLLLIVFNQ 261 (269)
Q Consensus 233 ~~~~~l~~~l~~mv~eG~i~~~~~d~Fnl 261 (269)
.+|+.+-+-++.|+++|.++++.++.+.+
T Consensus 136 g~~~~l~~~l~~~~~~gfi~~~~~~~~~~ 164 (178)
T TIGR00730 136 GHFDGLVEWLKYSIQEGFISESHLKLIHV 164 (178)
T ss_pred chHHHHHHHHHHHHHCCCCCHHHcCcEEE
Confidence 37899999999999999999999887654
No 267
>PF15579 Imm32: Immunity protein 32
Probab=20.74 E-value=4.3e+02 Score=20.92 Aligned_cols=36 Identities=8% Similarity=-0.091 Sum_probs=24.1
Q ss_pred CCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCc
Q 024331 211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTK 251 (269)
Q Consensus 211 GG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i 251 (269)
-|.+++++-.+.+ .++....+..+++-..|++.|++
T Consensus 67 ~GTiIvst~e~F~-----~~NpeHv~~An~IeirL~~~gLL 102 (102)
T PF15579_consen 67 KGTIIVSTDEPFD-----VENPEHVALANRIEIRLADQGLL 102 (102)
T ss_pred ceEEEEeCCCCcC-----CCCHHHHHHHHHHHHHHhhcCCC
Confidence 3889888544443 23333457788888888888875
No 268
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.01 E-value=96 Score=29.42 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331 188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (269)
Q Consensus 188 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~ 222 (269)
.|..+-...++.+|.+=-+-|+|||+|++..+-.-
T Consensus 214 I~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHSL 248 (314)
T COG0275 214 IYVNDELEELEEALEAALDLLKPGGRLAVISFHSL 248 (314)
T ss_pred eeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecch
Confidence 34455678899999988899999999999887554
Done!