BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024332
         (269 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 79  SDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPW 138
           +D + WRKYGQK +KGSPYPR YYRCSS  GCP +K VERSS D  +L+ TY  +H+H  
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITTYEGKHDHDM 73

Query: 139 P 139
           P
Sbjct: 74  P 74


>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 80  DSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWP 139
           D + WRKYGQK +KG+PYPR YY+C++  GC  RK VER++ DP  ++ TY  +HNH  P
Sbjct: 19  DGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,860,928
Number of Sequences: 62578
Number of extensions: 230595
Number of successful extensions: 303
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 12
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)