Query 024332
Match_columns 269
No_of_seqs 175 out of 635
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.1E-33 1E-37 214.3 4.6 67 73-140 9-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3.7E-33 1.3E-37 214.8 4.7 68 72-140 11-78 (78)
3 2rpr_A Flywch-type zinc finger 70.3 1.9 6.6E-05 32.0 1.9 49 77-138 23-73 (87)
4 1cz6_A Protein (androctonin); 19.7 24 0.00081 21.5 0.1 8 100-107 16-23 (26)
5 1xiw_B T-cell surface glycopro 16.5 17 0.00057 26.9 -1.4 49 79-136 17-75 (79)
6 1xiw_A T-cell surface glycopro 11.2 33 0.0011 27.3 -1.1 29 78-106 32-79 (105)
7 1ter_A Tertiapin; toxin; NMR { 9.7 54 0.0019 19.9 -0.3 12 81-92 12-23 (26)
8 1igq_A Transcriptional repress 9.0 74 0.0025 23.3 0.1 13 77-89 30-42 (62)
9 1odh_A MGCM1; transcription fa 8.3 2.3E+02 0.0078 24.4 2.9 20 123-142 141-160 (174)
10 3ed7_A Tsase, TS, thymidylate 7.7 57 0.0019 30.2 -1.2 11 80-90 117-127 (295)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=3.1e-33 Score=214.31 Aligned_cols=67 Identities=55% Similarity=1.034 Sum_probs=63.6
Q ss_pred CCCCCCCCCchhhhcCCccCCCCCCCCCccccCCCCCCccccceeeccCCCCeEEEEecccCCCCCCC
Q 024332 73 GESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPL 140 (269)
Q Consensus 73 ~~~~p~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H~~P~ 140 (269)
.+..+++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+||++++|||+|+|||+.|.
T Consensus 9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 3566899999999999999999999999999997 899999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=3.7e-33 Score=214.79 Aligned_cols=68 Identities=49% Similarity=1.013 Sum_probs=64.3
Q ss_pred CCCCCCCCCCchhhhcCCccCCCCCCCCCccccCCCCCCccccceeeccCCCCeEEEEecccCCCCCCC
Q 024332 72 KGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPL 140 (269)
Q Consensus 72 k~~~~p~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H~~P~ 140 (269)
.++.++++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+++++|||+|+|||+.|.
T Consensus 11 ~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 11 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred cCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 45667999999999999999999999999999998 899999999999999999999999999999874
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=70.29 E-value=1.9 Score=32.02 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCCCCchhhhcCCccCCCCCCCCCccccCC--CCCCccccceeeccCCCCeEEEEecccCCCCC
Q 024332 77 PPSDSWAWRKYGQKPIKGSPYPRGYYRCSS--SKGCPARKQVERSSVDPSMLLITYSCEHNHPW 138 (269)
Q Consensus 77 p~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~--~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H~~ 138 (269)
+.-|||.-.+--+ ...+.|.+|+. ..+|.|+-.... + . +.-.+.|||++
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p 73 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQP 73 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCC
Confidence 4458887775321 12468999996 358999755432 1 1 33568899976
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=19.72 E-value=24 Score=21.52 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=6.5
Q ss_pred CccccCCC
Q 024332 100 GYYRCSSS 107 (269)
Q Consensus 100 sYYRCs~~ 107 (269)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999973
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=16.52 E-value=17 Score=26.92 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=27.3
Q ss_pred CCCchhhhcCCcc--------CC--CCCCCCCccccCCCCCCccccceeeccCCCCeEEEEecccCCC
Q 024332 79 SDSWAWRKYGQKP--------IK--GSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNH 136 (269)
Q Consensus 79 ~DGy~WRKYGQK~--------Ik--gs~~pRsYYRCs~~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H 136 (269)
..++.|.|-|... ++ ...-||+||.|... +.+.. ..+.+.|-|.=.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~------~~~~~---~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT------DIYKD---KESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC------CCCCc---ccEEEEEEhhhcCCc
Confidence 5678999988642 33 33559999999531 11110 012567777766665
No 6
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=11.22 E-value=33 Score=27.25 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=20.0
Q ss_pred CCCCchhhhcCCcc----------------CCCCCC---CCCccccCC
Q 024332 78 PSDSWAWRKYGQKP----------------IKGSPY---PRGYYRCSS 106 (269)
Q Consensus 78 ~~DGy~WRKYGQK~----------------Ikgs~~---pRsYYRCs~ 106 (269)
+.+...|.|-|+.. ++++-. ||+||.|..
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 44558999888652 345533 899999963
No 7
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=9.74 E-value=54 Score=19.93 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=8.4
Q ss_pred CchhhhcCCccC
Q 024332 81 SWAWRKYGQKPI 92 (269)
Q Consensus 81 Gy~WRKYGQK~I 92 (269)
..-|+|.|.|..
T Consensus 12 hmcwkkcgkk~~ 23 (26)
T 1ter_A 12 HMCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHHCC--
T ss_pred hHHHHHhCcccc
Confidence 457999999865
No 8
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=9.03 E-value=74 Score=23.28 Aligned_cols=13 Identities=46% Similarity=1.255 Sum_probs=11.2
Q ss_pred CCCCCchhhhcCC
Q 024332 77 PPSDSWAWRKYGQ 89 (269)
Q Consensus 77 p~~DGy~WRKYGQ 89 (269)
|+.+|+.|-||-.
T Consensus 30 ps~~G~~wiKyED 42 (62)
T 1igq_A 30 PPAEGYAWLKYED 42 (62)
T ss_dssp CSSTTEEEEEETT
T ss_pred CCcCceEEEEEec
Confidence 7789999999953
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=8.30 E-value=2.3e+02 Score=24.41 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=13.7
Q ss_pred CCeEEEEecccCCCCCCCCC
Q 024332 123 PSMLLITYSCEHNHPWPLPS 142 (269)
Q Consensus 123 p~~~~vtY~G~H~H~~P~~~ 142 (269)
+..+...-+|.|+|+.|...
T Consensus 141 ~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 141 GRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp SSBEEEEEECCCCSCCCCCH
T ss_pred CCEEEEecccccCCCCCCCc
Confidence 33344455799999998763
No 10
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=7.65 E-value=57 Score=30.15 Aligned_cols=11 Identities=27% Similarity=1.005 Sum_probs=9.1
Q ss_pred CCchhhhcCCc
Q 024332 80 DSWAWRKYGQK 90 (269)
Q Consensus 80 DGy~WRKYGQK 90 (269)
=|++||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 47899999875
Done!