BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024333
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LX7|A Chain A, Crystal Structure Of A Novel Tudor Domain-Containing
Protein Sgf29
Length = 174
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 132 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSFII 191
G++VAARV A + D ++W + +V+ + T ++EV + ++ L +I
Sbjct: 40 GDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 92
Query: 192 PFP--KRNDSSIPE--FPPGRHVLAVYPGTTALYKATVVSTPRK 231
P P K N + PE F + VLA+YP TT Y+A + + P++
Sbjct: 93 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQR 136
>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
pdb|3ME9|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
pdb|3MET|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me2
pdb|3MET|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me2
pdb|3MEU|A Chain A, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
pdb|3MEU|B Chain B, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
pdb|3MEV|A Chain A, Crystal Structure Of Sgf29 In Complex With R2ak4me3
pdb|3MEV|B Chain B, Crystal Structure Of Sgf29 In Complex With R2ak4me3
Length = 180
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 132 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSFII 191
G++VAARV A + D ++W + +V+ + T ++EV + ++ L +I
Sbjct: 46 GDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 98
Query: 192 PFP--KRNDSSIPE--FPPGRHVLAVYPGTTALYKATVVSTPRK 231
P P K N + PE F + VLA+YP TT Y+A + + P++
Sbjct: 99 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQR 142
>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3
Length = 180
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 132 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSFII 191
G++VAARV A + D ++W + +V+ + T ++EV + ++ L +I
Sbjct: 48 GDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 100
Query: 192 PFP--KRNDSSIPE--FPPGRHVLAVYPGTTALYKATVVSTPRK 231
P P K N + PE F + VLA+YP TT Y+A + + P++
Sbjct: 101 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQR 144
>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing Protein
Sgf29
Length = 159
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 132 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSFII 191
G++VAARV A + D ++W + +V+ + T ++EV + ++ L +I
Sbjct: 31 GDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 83
Query: 192 PFP--KRNDSSIPE--FPPGRHVLAVYPGTTALYKATVVSTPRK 231
P P K N + PE F + VLA+YP TT Y+A + + P++
Sbjct: 84 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQR 127
>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
Length = 522
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 130 LKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSF 189
L G +VA + +AD EW +V+ + FEV K
Sbjct: 389 LVGSEVAYKPRRGSAD-GEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELL 447
Query: 190 IIP--FPKRNDSSIPEFPPGRHVLAVYPGTTALYKATVVSTPR 230
+IP FP +N +PPG VLA YP TT Y A V+ T R
Sbjct: 448 LIPPGFPTKN------YPPGTKVLARYPETTTFYPAIVIGTKR 484
>pdb|2RFB|A Chain A, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|B Chain B, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|C Chain C, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFC|A Chain A, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|B Chain B, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|C Chain C, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|D Chain D, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
Length = 343
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 51 DNSLTKLKSLYIQAKELSENEVHVSNLLVGQLDALLPSGAMGQQRRRIGGDQKRKRMKND 110
D L KL S YI + EN +V+N +V +L + S + G G K +++ D
Sbjct: 117 DMPLFKLWSDYIIGNKRDENFNYVNNRMVSRLLEIFKSDSHGIINVLAGSSLKNRKLTMD 176
Query: 111 SDISRLSPSMRNQLDTCASLKGEQVAARVTAENAD 145
I + + +T +L G + RV EN D
Sbjct: 177 EKIKYIMLLIIGGNETTTNLIGNMI--RVIDENPD 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,023,021
Number of Sequences: 62578
Number of extensions: 248076
Number of successful extensions: 689
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 9
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)