Query 024333
Match_columns 269
No_of_seqs 128 out of 188
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mea_A SAGA-associated factor 100.0 6.6E-48 2.3E-52 334.5 16.3 147 112-267 29-180 (180)
2 3mp6_A MBP, SGF29, maltose-bin 100.0 3.6E-38 1.2E-42 306.1 14.8 131 125-265 384-514 (522)
3 3dlm_A Histone-lysine N-methyl 97.8 9.7E-05 3.3E-09 65.3 9.6 110 127-254 7-120 (213)
4 2l8d_A Lamin-B receptor; DNA b 97.7 3.8E-05 1.3E-09 56.0 4.6 40 203-244 9-48 (66)
5 2dig_A Lamin-B receptor; tudor 97.7 5.9E-05 2E-09 55.2 5.2 55 203-265 12-66 (68)
6 2g3r_A Tumor suppressor P53-bi 97.6 5.1E-05 1.7E-09 61.7 4.4 54 205-267 6-62 (123)
7 2equ_A PHD finger protein 20-l 97.4 0.00027 9.1E-09 52.8 5.4 56 201-266 7-62 (74)
8 3p8d_A Medulloblastoma antigen 97.3 0.00037 1.3E-08 51.3 5.1 55 202-266 5-59 (67)
9 1mhn_A SurviVal motor neuron p 97.2 0.00043 1.5E-08 48.9 5.1 55 203-264 3-57 (59)
10 3qii_A PHD finger protein 20; 97.2 0.00041 1.4E-08 53.2 5.0 55 201-265 19-73 (85)
11 2e5p_A Protein PHF1, PHD finge 97.2 0.00062 2.1E-08 49.9 5.4 44 199-245 5-48 (68)
12 4hcz_A PHD finger protein 1; p 97.1 0.00069 2.4E-08 48.3 5.0 41 202-245 2-42 (58)
13 4a4f_A SurviVal of motor neuro 97.0 0.00066 2.2E-08 48.8 4.2 57 203-266 8-64 (64)
14 3s6w_A Tudor domain-containing 96.8 0.0016 5.4E-08 45.0 4.5 40 204-245 2-41 (54)
15 1g5v_A SurviVal motor neuron p 96.8 0.0017 5.8E-08 49.9 5.0 58 202-266 9-66 (88)
16 2ldm_A Uncharacterized protein 95.7 0.00025 8.5E-09 54.0 0.0 53 203-265 6-58 (81)
17 2eqj_A Metal-response element- 96.7 0.0026 9E-08 46.5 5.4 40 202-244 12-51 (66)
18 2d9t_A Tudor domain-containing 96.5 0.0042 1.5E-07 46.3 5.8 60 202-268 8-67 (78)
19 3pnw_C Tudor domain-containing 96.2 0.0045 1.5E-07 46.2 4.0 57 203-266 17-73 (77)
20 2xk0_A Polycomb protein PCL; t 95.9 0.02 6.7E-07 42.2 6.4 40 201-245 13-52 (69)
21 2fhd_A RAD9 homolog, DNA repai 95.8 0.0067 2.3E-07 50.9 4.0 38 208-245 10-50 (153)
22 2e5q_A PHD finger protein 19; 95.8 0.019 6.6E-07 41.4 5.7 41 202-245 6-46 (63)
23 1ssf_A Transformation related 95.6 0.011 3.7E-07 49.9 4.5 39 204-245 9-47 (156)
24 2m0o_A PHD finger protein 1; t 95.5 0.025 8.6E-07 42.5 5.5 42 201-245 24-65 (79)
25 4a4f_A SurviVal of motor neuro 95.3 0.12 4.2E-06 36.7 8.6 59 124-194 4-62 (64)
26 1mhn_A SurviVal motor neuron p 94.8 0.16 5.5E-06 35.4 7.8 56 128-195 3-58 (59)
27 3fdr_A Tudor and KH domain-con 94.7 0.027 9.3E-07 42.6 3.9 40 203-245 27-66 (94)
28 3pnw_C Tudor domain-containing 94.1 0.21 7.1E-06 37.0 7.5 56 128-195 17-72 (77)
29 2d9t_A Tudor domain-containing 93.8 0.4 1.4E-05 35.4 8.6 57 127-195 8-64 (78)
30 2eqk_A Tudor domain-containing 93.8 0.32 1.1E-05 37.1 8.2 60 123-195 16-75 (85)
31 2diq_A Tudor and KH domain-con 93.8 0.078 2.7E-06 41.2 4.9 40 203-245 32-71 (110)
32 3ask_A E3 ubiquitin-protein li 93.3 0.48 1.6E-05 42.1 9.8 105 129-244 3-135 (226)
33 2eko_A Histone acetyltransfera 93.1 0.1 3.5E-06 39.9 4.3 46 199-244 5-53 (87)
34 3s6w_A Tudor domain-containing 92.9 0.45 1.5E-05 32.4 7.1 53 129-193 2-54 (54)
35 2equ_A PHD finger protein 20-l 92.8 0.48 1.7E-05 35.0 7.6 55 126-195 7-61 (74)
36 1g5v_A SurviVal motor neuron p 92.7 0.49 1.7E-05 36.0 7.7 58 127-196 9-66 (88)
37 2lcc_A AT-rich interactive dom 92.4 0.049 1.7E-06 40.5 1.7 44 201-244 3-48 (76)
38 2qqr_A JMJC domain-containing 91.1 0.66 2.3E-05 37.3 7.1 111 128-265 5-115 (118)
39 3ntk_A Maternal protein tudor; 90.3 0.33 1.1E-05 40.4 4.9 40 203-245 47-86 (169)
40 3fdr_A Tudor and KH domain-con 90.2 1.2 4.3E-05 33.2 7.7 56 127-195 26-81 (94)
41 2wac_A CG7008-PA; unknown func 89.1 0.32 1.1E-05 41.1 4.0 85 148-245 3-89 (218)
42 3m9q_A Protein MALE-specific l 88.5 0.38 1.3E-05 37.7 3.7 63 199-264 15-85 (101)
43 1ssf_A Transformation related 88.5 2.3 8E-05 35.7 8.7 92 129-244 9-101 (156)
44 2rnz_A Histone acetyltransfera 88.2 0.51 1.7E-05 36.5 4.2 44 199-244 21-64 (94)
45 3sd4_A PHD finger protein 20; 87.8 0.66 2.3E-05 33.4 4.4 40 202-244 11-50 (69)
46 4b9w_A TDRD1, tudor domain-con 87.1 0.54 1.8E-05 40.0 4.1 40 203-245 65-104 (201)
47 2g3r_A Tumor suppressor P53-bi 87.0 5.6 0.00019 32.1 9.8 87 130-243 6-96 (123)
48 3h8z_A FragIle X mental retard 86.7 6.5 0.00022 31.8 10.2 92 132-243 5-100 (128)
49 2lrq_A Protein MRG15, NUA4 com 86.2 0.14 4.9E-06 38.8 0.0 62 201-267 10-71 (85)
50 2f5k_A MORF-related gene 15 is 86.1 0.47 1.6E-05 37.2 3.0 58 201-263 20-77 (102)
51 4b9x_A TDRD1, tudor domain-con 85.8 0.53 1.8E-05 40.8 3.5 40 203-245 65-104 (226)
52 3oa6_A MALE-specific lethal 3 85.7 0.75 2.6E-05 36.6 4.0 59 202-263 18-84 (110)
53 3m9p_A MALE-specific lethal 3 85.1 0.62 2.1E-05 37.1 3.2 62 200-264 16-85 (110)
54 2ro0_A Histone acetyltransfera 84.9 1.1 3.9E-05 34.3 4.6 44 199-244 19-62 (92)
55 2diq_A Tudor and KH domain-con 84.6 2.2 7.4E-05 32.8 6.2 55 128-195 32-86 (110)
56 2qqr_A JMJC domain-containing 84.2 0.74 2.5E-05 37.1 3.3 40 201-244 3-42 (118)
57 2xdp_A Lysine-specific demethy 83.7 0.31 1.1E-05 39.5 0.9 40 201-244 4-43 (123)
58 4hcz_A PHD finger protein 1; p 83.5 7 0.00024 27.7 7.7 52 128-193 3-54 (58)
59 3qii_A PHD finger protein 20; 82.5 6.2 0.00021 29.9 7.7 55 127-196 20-74 (85)
60 1wgs_A MYST histone acetyltran 81.4 1 3.4E-05 36.7 3.2 42 201-243 10-53 (133)
61 2ldm_A Uncharacterized protein 82.1 0.3 1E-05 36.9 0.0 54 128-196 6-59 (81)
62 2wac_A CG7008-PA; unknown func 81.0 6.1 0.00021 33.0 8.1 54 128-195 51-104 (218)
63 3p8d_A Medulloblastoma antigen 80.6 8.6 0.0003 27.8 7.6 54 128-196 6-59 (67)
64 3dlm_A Histone-lysine N-methyl 79.6 0.75 2.6E-05 40.5 2.0 43 201-244 6-48 (213)
65 2m0o_A PHD finger protein 1; t 79.5 5.2 0.00018 29.9 6.2 40 125-169 23-62 (79)
66 4b9w_A TDRD1, tudor domain-con 78.3 7.8 0.00027 32.6 8.0 55 128-195 65-119 (201)
67 2e5p_A Protein PHF1, PHD finge 77.8 13 0.00046 26.9 7.8 53 128-194 9-61 (68)
68 2xdp_A Lysine-specific demethy 76.9 1.1 3.9E-05 36.2 2.1 97 128-245 6-102 (123)
69 2hqx_A P100 CO-activator tudor 75.8 2.2 7.4E-05 37.0 3.8 89 146-245 15-103 (246)
70 4b9x_A TDRD1, tudor domain-con 75.6 9 0.00031 32.9 7.7 56 128-196 65-120 (226)
71 4fu6_A PC4 and SFRS1-interacti 75.4 3.1 0.00011 34.1 4.5 46 203-249 22-70 (153)
72 1uur_A Stata protein, STAT pro 74.8 7.4 0.00025 38.0 7.6 64 12-78 11-78 (473)
73 2dig_A Lamin-B receptor; tudor 71.1 27 0.00092 25.3 8.3 57 126-195 10-66 (68)
74 2eqj_A Metal-response element- 69.4 28 0.00094 25.2 7.7 52 127-192 12-63 (66)
75 2e5q_A PHD finger protein 19; 68.6 17 0.00058 26.0 6.4 53 128-194 7-59 (63)
76 3e9g_A Chromatin modification- 68.0 7.1 0.00024 31.8 4.9 26 201-228 5-30 (130)
77 3ask_A E3 ubiquitin-protein li 67.8 4.2 0.00015 36.0 3.8 47 203-249 2-55 (226)
78 4e61_A Protein BIM1; EB1-like 66.7 17 0.0006 28.5 6.7 49 8-60 3-51 (106)
79 1ri0_A Hepatoma-derived growth 65.9 6.5 0.00022 30.6 4.2 45 201-246 17-64 (110)
80 3h8z_A FragIle X mental retard 61.8 34 0.0011 27.6 7.8 64 127-198 59-122 (128)
81 3ntk_A Maternal protein tudor; 60.9 31 0.0011 28.2 7.7 53 128-195 47-99 (169)
82 3bdl_A Staphylococcal nuclease 60.8 6 0.00021 38.7 3.8 39 203-245 411-449 (570)
83 2eqm_A PHD finger protein 20-l 60.6 11 0.00037 28.4 4.4 40 202-244 18-57 (88)
84 3db3_A E3 ubiquitin-protein li 59.9 49 0.0017 27.8 8.7 91 127-228 9-122 (161)
85 2hqx_A P100 CO-activator tudor 58.4 30 0.001 29.6 7.5 54 128-195 65-118 (246)
86 1at0_A 17-hedgehog; developmen 57.4 40 0.0014 26.9 7.7 98 128-238 20-126 (145)
87 2gfu_A DNA mismatch repair pro 56.7 22 0.00074 28.3 5.9 60 201-266 20-87 (134)
88 3qby_A Hepatoma-derived growth 55.1 17 0.00059 27.3 4.8 46 203-249 5-53 (94)
89 2daq_A WHSC1L1 protein, isofor 54.6 12 0.0004 28.7 3.8 46 202-248 7-60 (110)
90 2eqk_A Tudor domain-containing 51.7 19 0.00064 27.3 4.4 39 203-244 21-59 (85)
91 1h3z_A Hypothetical 62.8 kDa p 50.9 16 0.00055 28.0 4.1 57 201-263 4-70 (109)
92 3mea_A SAGA-associated factor 50.2 37 0.0013 28.9 6.5 63 127-195 115-178 (180)
93 1xou_B Z5138 gene product; coi 48.1 22 0.00075 26.6 4.2 60 18-87 24-83 (95)
94 3pfs_A Bromodomain and PHD fin 44.4 56 0.0019 27.3 6.6 28 201-229 34-61 (158)
95 3l42_A Peregrin; transcription 42.2 47 0.0016 26.9 5.6 28 201-229 3-30 (130)
96 3mp6_A MBP, SGF29, maltose-bin 40.2 48 0.0017 31.3 6.4 59 127-195 456-514 (522)
97 3sd4_A PHD finger protein 20; 40.0 78 0.0027 22.2 6.0 38 125-167 9-46 (69)
98 3bdl_A Staphylococcal nuclease 40.0 67 0.0023 31.2 7.5 55 127-195 410-464 (570)
99 1khc_A DNA cytosine-5 methyltr 38.6 27 0.00091 28.6 3.7 45 202-247 10-58 (147)
100 3db3_A E3 ubiquitin-protein li 36.7 29 0.001 29.1 3.7 49 202-250 9-73 (161)
101 3vem_A Helicase protein MOM1; 35.6 1.4E+02 0.0047 23.7 7.2 62 14-82 37-98 (115)
102 1rso_B MLIN-2/CASK, peripheral 33.9 50 0.0017 22.5 4.0 39 3-41 4-54 (56)
103 2yy0_A C-MYC-binding protein; 33.7 70 0.0024 21.8 4.6 37 5-41 15-51 (53)
104 2xk0_A Polycomb protein PCL; t 32.8 1.4E+02 0.0048 21.6 7.9 51 127-193 14-64 (69)
105 2k3y_A Chromatin modification- 32.5 30 0.001 28.2 3.1 26 202-229 8-33 (136)
106 3ilk_A Uncharacterized tRNA/RR 31.1 1.1E+02 0.0038 26.7 6.8 32 52-84 204-235 (244)
107 2l8d_A Lamin-B receptor; DNA b 30.6 1.5E+02 0.0051 21.3 8.4 56 127-195 8-63 (66)
108 2w4y_A Caulobacter 5 virus-lik 30.5 23 0.00077 27.4 1.9 48 214-262 34-87 (122)
109 2p22_C Protein SRN2; endosome, 30.3 99 0.0034 26.3 6.1 70 10-79 80-151 (192)
110 2yrv_A AT-rich interactive dom 30.1 25 0.00086 28.1 2.1 21 209-229 15-37 (117)
111 2l89_A PWWP domain-containing 26.5 27 0.00093 26.8 1.7 44 201-245 3-54 (108)
112 3llr_A DNA (cytosine-5)-methyl 24.7 79 0.0027 26.1 4.3 57 202-264 15-75 (154)
113 3qr8_A GPV, baseplate assembly 24.6 2.9E+02 0.01 23.1 8.1 81 149-244 18-107 (211)
114 2bud_A Males-absent on the fir 24.3 79 0.0027 24.1 3.9 38 206-244 17-57 (92)
115 2eqm_A PHD finger protein 20-l 24.2 1.8E+02 0.0063 21.5 6.0 38 126-168 17-54 (88)
116 2lcc_A AT-rich interactive dom 23.2 82 0.0028 22.8 3.7 39 127-167 4-44 (76)
117 1deq_A Fibrinogen (alpha chain 22.2 2.8E+02 0.0097 26.3 8.0 70 8-78 69-139 (390)
118 1wgs_A MYST histone acetyltran 21.0 1.1E+02 0.0037 24.5 4.4 35 128-167 12-50 (133)
119 2zxx_A Geminin; coiled-coil, c 20.8 2.2E+02 0.0075 21.1 5.6 40 47-86 11-50 (79)
120 1wjq_A KIAA1798 protein; MBT d 20.8 1.4E+02 0.0048 23.2 4.8 38 203-244 13-51 (107)
121 3ghg_A Fibrinogen alpha chain; 20.5 74 0.0025 31.5 3.8 29 8-36 66-94 (562)
No 1
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=100.00 E-value=6.6e-48 Score=334.52 Aligned_cols=147 Identities=30% Similarity=0.509 Sum_probs=121.1
Q ss_pred CCCCCCccccccccccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCcee
Q 024333 112 DISRLSPSMRNQLDTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFII 191 (269)
Q Consensus 112 ~~s~l~~~~~~~~~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~II 191 (269)
.++.||.++. ..+...+++|++|||+++..+ ++++||||+|++|++++++|||+|+|+ ++ +++|++++++||
T Consensus 29 ~~p~lcGa~p-~~~~~~~~~G~~VAakvk~~~-~~~~WILa~Vv~~~~~~~rYeV~D~d~----eg--~~~~~~s~~~II 100 (180)
T 3mea_A 29 KPPPLCGAIP-ASGDYVARPGDKVAARVKAVD-GDEQWILAEVVSYSHATNKYEVDDIDE----EG--KERHTLSRRRVI 100 (180)
T ss_dssp CCCTTBTTCC-CCTTCCCCTTCEEEEEEECCC---EEEEEEEEEEEETTTTEEEEEECCT----TC--CEEEEEEGGGEE
T ss_pred CCCCcccccc-CCCCcccCCCCEEEEEcCCCC-CCccEEEEEEEEEcCCCCEEEEecCCC----CC--ceeEEeCHHHEE
Confidence 3455664444 244678999999999998643 447999999999999999999999964 23 568999999999
Q ss_pred ecCCCCC--CC--CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC-CCCCCCCcccccCceEeeCCCC
Q 024333 192 PFPKRND--SS--IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD-EEDGALPQRTVPFHNVVPLPEG 266 (269)
Q Consensus 192 PLP~~~~--~~--~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd-~~~G~~P~~~Vp~ryVv~~pe~ 266 (269)
|||++.+ ++ .+.|++|++||||||+|||||+|+|+++|+ +.+++|+|+|||| +++|++|++.||+||||+||++
T Consensus 101 PLP~~~a~p~t~~~~~f~~G~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~L~FEdde~~dG~sp~~~V~~RyVv~~ke~ 179 (180)
T 3mea_A 101 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQ-RPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEP 179 (180)
T ss_dssp ECCSBBCCTTTCGGGSCCTTCEEEEECTTSSEEEEEEEEECCS-STTCCEEEEEBCTTSTTSBCCCEEECGGGEEEC---
T ss_pred ECCCcCCCcccCccccCCCCCEEEEeCCCCceeeEEEEecCCC-CCCCcEEEEEcCCCccCCCCCCcEecceEEEccCCC
Confidence 9998743 44 457999999999999999999999999985 4568899999999 5899999999999999999987
Q ss_pred C
Q 024333 267 H 267 (269)
Q Consensus 267 ~ 267 (269)
+
T Consensus 180 ~ 180 (180)
T 3mea_A 180 K 180 (180)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=100.00 E-value=3.6e-38 Score=306.11 Aligned_cols=131 Identities=31% Similarity=0.487 Sum_probs=108.0
Q ss_pred cccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCCCCCCCC
Q 024333 125 DTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEF 204 (269)
Q Consensus 125 ~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~~~~~~f 204 (269)
++.++++|++|||+++.. +++++||||+|++|+++++||||+|+|||++++. +++|++|+++|||||.. ...+.|
T Consensus 384 ~~~~~~~~~~~~~~~~~~-~~~~~wi~~~~~~~~~~~~~y~v~d~~~~~~~~~--~~~~~~~~~~~~~~p~~--~~~~~~ 458 (522)
T 3mp6_A 384 PNAPILVGSEVAYKPRRG-SADGEWIQCEVLKVVADGTRFEVRDPEPDELGNS--GKVYKCNRKELLLIPPG--FPTKNY 458 (522)
T ss_dssp CCCCBCTTCEEEECCC------CCEEEEEEEEEETTTTEEEEEECSCBTTBTT--CEEEEECGGGEEEECSS--CCCCCC
T ss_pred cccccCCCCEEEEecCCC-CCCCCEEEEEEEEEeCCCCEEEEeCCCCCCCCCC--CeeEEccHHHEEECCCC--CcccCC
Confidence 356689999999999854 3568999999999999999999999999755443 47999999999999963 335679
Q ss_pred CCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024333 205 PPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 265 (269)
Q Consensus 205 ~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe 265 (269)
++|++||||||+|||||||+|+++|++ +.|+|+||||++. .+.+.|++||||++|.
T Consensus 459 ~~~~~v~a~~p~tt~fy~a~v~~~~~~---~~~~~~f~~~~~~--~~~~~~~~~~v~~~~~ 514 (522)
T 3mp6_A 459 PPGTKVLARYPETTTFYPAIVIGTKRD---GTCRLRFDGEEEV--DKETEVTRRLVLPSPT 514 (522)
T ss_dssp CTTCEEEEECTTCSEEEEEEEEEECTT---SCEEEEETTC------CCEEECGGGEEECHH
T ss_pred CCCCEEEEECCCCcceEeEEEecCCCC---CeEEEEecCCCCC--CccccccceeEEecCc
Confidence 999999999999999999999998753 5799999999654 3578999999999985
No 3
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=97.79 E-value=9.7e-05 Score=65.31 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=78.5
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEe--CCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCCCCCCCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFD--RETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEF 204 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~--~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~~~~~~f 204 (269)
..++.|+.|-++-. ...|.-|.|+.+- +++.+|+|.=- +++ +. .+|.++|.-= . . ...-.+
T Consensus 7 ~~l~Vg~~vlg~k~-----~~~W~rg~v~~I~~~~~g~~YkVkF~------~~g-~~--ivs~~hiA~~-~-~-p~~~~l 69 (213)
T 3dlm_A 7 GDLIVSMRILGKKR-----TKTWHKGTLIAIQTVGPGKKYKVKFD------NKG-KS--LLSGNHIAYD-Y-H-PPADKL 69 (213)
T ss_dssp TTEETTCEEEEECT-----TSBEEEEEEEEEEEETTEEEEEEEES------SSC-EE--EECGGGEEES-S-C-CCGGGC
T ss_pred CcEEEccEEEEEec-----CCcEEEEEEEEEEECCCCeEEEEEEc------CCC-CE--EeecceEEEe-c-C-CCccEE
Confidence 35789999999865 3789999999964 34677999753 111 22 5777777651 0 0 111259
Q ss_pred CCCCeEEEeCCCCC--cccceEEeccCCCCCCCCeEEEecCCCCCCCCCccc
Q 024333 205 PPGRHVLAVYPGTT--ALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRT 254 (269)
Q Consensus 205 ~kg~~VLAlYP~TT--~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~ 254 (269)
+.|++|.|+|.+.+ .||.++|..+|.......|.|-|||-+ .+|.++..
T Consensus 70 ~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~-~~Yv~~~~ 120 (213)
T 3dlm_A 70 YVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGY-ASYVTQSE 120 (213)
T ss_dssp CTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSC-EEEECGGG
T ss_pred eEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCC-cceecCce
Confidence 99999999999976 899999999997556667999998754 24544433
No 4
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.70 E-value=3.8e-05 Score=56.04 Aligned_cols=40 Identities=23% Similarity=0.529 Sum_probs=35.7
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
.|+.|+.|||.||+...||+|.|.+-- ...+.|.|+|-|+
T Consensus 9 ~~~vgd~VmaRW~Gd~~yYparI~Si~--s~~~~Y~V~fKdg 48 (66)
T 2l8d_A 9 KYADGEVVMGRWPGSVLYYEVQVTSYD--DASHLYTVKYKDG 48 (66)
T ss_dssp SSCSSCEEEEECTTSSCEEEEEEEEEE--TTTTEEEEEETTS
T ss_pred EeecCCEEEEEcCCCccceEEEEEEec--cCCceEEEEecCC
Confidence 599999999999999999999999984 4567899999774
No 5
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.67 E-value=5.9e-05 Score=55.25 Aligned_cols=55 Identities=18% Similarity=0.432 Sum_probs=42.7
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 265 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe 265 (269)
.|+.|+.|||.||+...||+|.|.+-- ...+.|.|+|-|+. ...+.++.+=++|.
T Consensus 12 ~f~vgd~VmaRW~Gd~~yYparItSit--s~~~~Y~VkfKdgT------~e~L~~kDIKp~~~ 66 (68)
T 2dig_A 12 KFADGEVVRGRWPGSSLYYEVEILSHD--STSQLYTVKYKDGT------ELELKENDIKSGPS 66 (68)
T ss_dssp SSCSSCEEEEECTTTCCEEEEEEEEEE--TTTTEEEEECTTSC------EEEEETTTEECCCC
T ss_pred EeecCCEEEEEccCCccceEEEEEEec--cCCceEEEEecCCC------EEEechhccccCCC
Confidence 499999999999999999999999984 45678999997742 12455555555554
No 6
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=97.59 E-value=5.1e-05 Score=61.66 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=44.8
Q ss_pred CCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEe---eCCCCC
Q 024333 205 PPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVV---PLPEGH 267 (269)
Q Consensus 205 ~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv---~~pe~~ 267 (269)
..|.+|||.|++-.-||+++|.+. +..+.|+|+|||.+ .+.|..++|| ++|.|+
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~---~~~~ky~V~FdDg~------~~~v~~k~iiv~d~ip~g~ 62 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRD---VGAGKYKLLFDDGY------ECDVLGKDILLCDPIPLDT 62 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEE---EETTEEEEEETTSC------EEEEEGGGEECCSSCCTTC
T ss_pred ccceEEEEEeccCCcCcccEEEEe---ccCCeEEEEEcCCC------eeEeecceEEEecccCCCc
Confidence 469999999999999999999885 23466999999975 3568899999 888775
No 7
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00027 Score=52.80 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=44.8
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 266 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe~ 266 (269)
...|++|+.|||.|. --.||+|+|.+... .+.|.|.|+|-. ...|+...+-++|+.
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~---~~~~~V~f~Dyn------~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINK---EGTFTVQFYDGV------IRCLKRMHIKAMPED 62 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEEST---TSSEEEEETTSC------EEEECGGGEECCCGG
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECC---CCEEEEEEecCC------eEEecHHHCeeCChh
Confidence 456999999999999 67999999999852 267999998752 235788888888764
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.26 E-value=0.00037 Score=51.25 Aligned_cols=55 Identities=25% Similarity=0.425 Sum_probs=42.1
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 266 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe~ 266 (269)
|.|..|+.|||.| .---||+|+|.+.-. .+.|.|.|.|. . ...|....|-++|..
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~---~~~Y~V~F~dG----~--~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNK---DGTYTVKFYDG----V--VQTVKHIHVKAFSKD 59 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECT---TSEEEEEETTS----C--EEEEEGGGEEECC--
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECC---CCeEEEEEeCC----c--eEEEeHHHcccCCcc
Confidence 6799999999999 777899999999852 36799999873 2 135777777777753
No 9
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.24 E-value=0.00043 Score=48.91 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=40.9
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLP 264 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p 264 (269)
.|++|+.|+|.|.+--+||||+|.+.. ...+.|.|.|.|-. .+ -.||..-+-++|
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~--~~~~~~~V~f~DYG---n~--e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASID--FKRETCVVVYTGYG---NR--EEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEE--TTTTEEEEEETTTT---EE--EEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEc--CCCCEEEEEEEcCC---CE--EEEcHHHeeCCC
Confidence 589999999999988899999999873 22467999998842 11 246655555554
No 10
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=97.19 E-value=0.00041 Score=53.21 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=41.3
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 265 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe 265 (269)
.+.|..|+.|||.| .---||+|+|.+.-. .+.|.|+|.|. .+ ..|....|-++|.
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~---~~~YtV~F~DG----~~--etvk~~~IKp~~~ 73 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNK---DGTYTVKFYDG----VV--QTVKHIHVKAFSK 73 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECT---TSEEEEEETTS----CE--EEEEGGGEEECC-
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECC---CCeEEEEEeCC----Ce--EEecHHHcccCCh
Confidence 45799999999999 777899999999842 36799999873 21 3567777777765
No 11
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.00062 Score=49.87 Aligned_cols=44 Identities=32% Similarity=0.467 Sum_probs=37.7
Q ss_pred CCCCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 199 SSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 199 ~~~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
.+.+.|..|+.|||.|-| --||.++|...- .....|.|+|+|+.
T Consensus 5 ~~~~~f~eGqdVLarWsD-GlfYlGtV~kV~--~~~~~ClV~FeD~s 48 (68)
T 2e5p_A 5 SSGPRLWEGQDVLARWTD-GLLYLGTIKKVD--SAREVCLVQFEDDS 48 (68)
T ss_dssp CCCCCCCTTCEEEEECTT-SSEEEEEEEEEE--TTTTEEEEEETTTE
T ss_pred CCCcccccCCEEEEEecC-CcEEEeEEEEEe--cCCcEEEEEEccCC
Confidence 567899999999999999 789999999984 34567999999973
No 12
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=97.11 E-value=0.00069 Score=48.34 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=35.1
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
|.|..|+.|||.+-+ --||.|+|+..- .....|.|+|+|..
T Consensus 2 ~~f~~GedVLarwsD-G~fYlGtI~~V~--~~~~~clV~F~D~s 42 (58)
T 4hcz_A 2 PRLWEGQDVLARWTD-GLLYLGTIKKVD--SAREVCLVQFEDDS 42 (58)
T ss_dssp CSCCTTCEEEEECTT-SCEEEEEEEEEE--TTTTEEEEEETTSC
T ss_pred CccccCCEEEEEecC-CCEEeEEEEEEe--cCCCEEEEEEcCCC
Confidence 679999999999999 789999999973 23457999999974
No 13
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.99 E-value=0.00066 Score=48.81 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=44.3
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 266 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe~ 266 (269)
.+.+|+.|+|+|.+--+||||+|.+... ..+.|.|.|.|-.. . -.||..-+-++++|
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~--~~~~~~V~fvdYGn---~--e~V~~~~Lrpl~~~ 64 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDE--ENGTAAITFAGYGN---A--EVTPLLNLKPVEEG 64 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEET--TTTEEEEEETTTTE---E--EEEEGGGEECCSCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcC--CCCEEEEEEEecCC---E--EEEeHHHcEeCCCC
Confidence 5899999999998888999999999742 23579999998631 1 25777777777765
No 14
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.77 E-value=0.0016 Score=45.02 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=32.9
Q ss_pred CCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 204 FPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 204 f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
|++|+.++|.|.+=-.||||+|.+... ..+.|.|.|.|-.
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~--~~~~~~V~fvDYG 41 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHS--SGMTAVVKFIDYG 41 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC----CCSEEEEEETTTC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeC--CCCEEEEEEEccC
Confidence 789999999998888999999999742 2367999998863
No 15
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.76 E-value=0.0017 Score=49.91 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=42.8
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 266 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe~ 266 (269)
..+.+|+.|||+|.+--+||||+|.+... ..+.|.|.|.|-.. .-.||...+.+++..
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~--~~~~~~V~fiDYGN-----~E~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDF--KRETCVVVYTGYGN-----REEQNLSDLLSPICE 66 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEET--TTTEEEEEETTTCC-----EEEEEGGGCBCCC--
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecC--CCCEEEEEEecCCC-----EEEEcHHHcccCChh
Confidence 36899999999999889999999999742 23679999987531 124666666666654
No 16
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.74 E-value=0.00025 Score=53.99 Aligned_cols=53 Identities=26% Similarity=0.432 Sum_probs=40.4
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 265 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe 265 (269)
.|++|+.|||.|. --.||+|+|.+... .+.|.|.|+|.. .-.|+...+-++|.
T Consensus 6 ~~kvGd~clAkws-Dg~wY~A~I~~v~~---~~~y~V~F~DGn------~E~V~~s~LrPl~~ 58 (81)
T 2ldm_A 6 EFQINEQVLASWS-DSRFYPAKVTAVNK---DGTYTVKFYDGV------VQTVKHIHVKAFSK 58 (81)
Confidence 4999999999999 77999999999852 357999998721 12466666666654
No 17
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.70 E-value=0.0026 Score=46.51 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=33.3
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
..|..|+.|||.| -==-||.|+|.+.- ...+.|.|+|+|.
T Consensus 12 ~~f~vGddVLA~w-tDGl~Y~gtI~~V~--~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 12 CKFEEGQDVLARW-SDGLFYLGTIKKIN--ILKQSCFIIFEDS 51 (66)
T ss_dssp CCSCTTCEEEEEC-TTSCEEEEEEEEEE--TTTTEEEEEETTT
T ss_pred ccccCCCEEEEEE-ccCcEEEeEEEEEc--cCCcEEEEEEccC
Confidence 4699999999999 23459999999984 3457899999997
No 18
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.55 E-value=0.0042 Score=46.28 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=44.7
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCCCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEGHR 268 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe~~~ 268 (269)
-.+.+|+.|+|.|.+=-.||||+|..... ..+.|.|.|-|-.. .-.|+..-+-++|....
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~--~~~~~~V~fiDYGN-----~e~V~~~~Lr~l~~~ll 67 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHS--SGMTAVVKFTDYGN-----YEEVLLSNIKPVQTEAW 67 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECS--SSSEEEEEETTTTE-----EEEEEGGGEEECCCCCC
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeC--CCCEEEEEEEcCCC-----eEEEcHHHeEeCCHHHh
Confidence 35899999999999778999999998742 23679999988531 12577777777776543
No 19
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.16 E-value=0.0045 Score=46.16 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=41.9
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 266 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe~ 266 (269)
.+.+|+.|+|.|.+=-.||||+|.+... ..+.|.|.|-|-... -.|+..-+-++|..
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~--~~~~~~V~fvDYGN~-----e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHS--SGMTAVVKFIDYGNY-----EEVLLSNIKPIQTE 73 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECT--TSSEEEEEETTTCCE-----EEEEGGGEECC---
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeC--CCCEEEEEEEcCCCe-----EEEeHHHeEECChh
Confidence 4899999999998878999999999742 235799999886321 25777777777654
No 20
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=95.93 E-value=0.02 Score=42.16 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
...|..|+.|||.+=| --||-++|+..- ...|.|+|||..
T Consensus 13 a~~~~~geDVL~rw~D-G~fYLGtIVd~~----~~~ClV~FeD~S 52 (69)
T 2xk0_A 13 AVTYALQEDVFIKCND-GRFYLGTIIDQT----SDQYLIRFDDQS 52 (69)
T ss_dssp CCCCCTTCEEEEECTT-SCEEEEEEEEEC----SSCEEEEETTCC
T ss_pred ccccccCCeEEEEecC-CCEEEEEEEecC----CceEEEEecCCc
Confidence 3679999999999988 899999997753 356999999974
No 21
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=95.84 E-value=0.0067 Score=50.87 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=31.5
Q ss_pred CeEEEeCCC-CCcccceEEeccCCC--CCCCCeEEEecCCC
Q 024333 208 RHVLAVYPG-TTALYKATVVSTPRK--RKTDDYLLEFDDDE 245 (269)
Q Consensus 208 ~~VLAlYP~-TT~FY~A~V~~~p~~--~~~~~Y~L~FeDd~ 245 (269)
.+|+|.|++ -.+||||+.++.+.. ..+..|.|+|||..
T Consensus 10 NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~ 50 (153)
T 2fhd_A 10 NRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDAT 50 (153)
T ss_dssp GEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSC
T ss_pred ceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCC
Confidence 589999996 799999999999732 24577999999974
No 22
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.77 E-value=0.019 Score=41.40 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
..|..|+.|||.|-|= -||.|+|...- .....|.|+|+|+.
T Consensus 6 ~~f~eGqdVLarWsDG-lfYlgtV~kV~--~~~~~ClV~FeD~s 46 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTDG-LYYLGKIKRVS--SSKQSCLVTFEDNS 46 (63)
T ss_dssp CCCCTTCEEEEECTTS-CEEEEEECCCC--STTSEEEEEETTSC
T ss_pred cceecCCEEEEEecCC-CEEEEEEEEEe--cCCCEEEEEEccCc
Confidence 4699999999999764 59999999984 33456999999974
No 23
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.64 E-value=0.011 Score=49.87 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 204 FPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 204 f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
-..|.+|||.|.+---||+|+|...- ..+.|.|.|||..
T Consensus 9 ~~iG~rVfArWsd~~yyYpG~V~~~~---~~~~Y~V~FdDG~ 47 (156)
T 1ssf_A 9 SFVGLRVVAKWSSNGYFYSGKITRDV---GAGKYKLLFDDGY 47 (156)
T ss_dssp CSTTCEEEECSSCSSEEEEEEEEECC---TTTEEEEECTTSC
T ss_pred chhccEEEEEcCCCCcccccEEEEec---cCCEEEEEEcCCC
Confidence 47899999999988889999999862 3466999999964
No 24
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=95.46 E-value=0.025 Score=42.45 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=34.0
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
...|..|+.|||.+=| --||.++|+..- .....|.|+|+|..
T Consensus 24 ~~~f~eGeDVLarwsD-GlfYLGTI~kV~--~~~e~ClV~F~D~S 65 (79)
T 2m0o_A 24 RPRLWEGQDVLARWTD-GLLYLGTIKKVD--SAREVCLVQFEDDS 65 (79)
T ss_dssp CCCCCTTCEEEBCCTT-SCCCEEEEEEEE--TTTTEEEEEETTSC
T ss_pred cceeccCCEEEEEecC-CCEEeEEEEEec--cCCCEEEEEEcCCC
Confidence 3569999999999966 359999999773 33466999999974
No 25
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=95.31 E-value=0.12 Score=36.69 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=47.4
Q ss_pred ccccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecC
Q 024333 124 LDTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP 194 (269)
Q Consensus 124 ~~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP 194 (269)
++....++|+.++|+-.. ++.|--|+|.+++.+++.|+|.=+|= + ..-.++.+.|.||+
T Consensus 4 ~~~~~~~vGd~c~A~~s~----Dg~wYrA~I~~v~~~~~~~~V~fvdY---G-----n~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 4 QPTHSWKVGDKCMAVWSE----DGQCYEAEIEEIDEENGTAAITFAGY---G-----NAEVTPLLNLKPVE 62 (64)
T ss_dssp CCSSCCCTTCEEEEECTT----TSSEEEEEEEEEETTTTEEEEEETTT---T-----EEEEEEGGGEECCS
T ss_pred CcCCCCCCCCEEEEEECC----CCCEEEEEEEEEcCCCCEEEEEEEec---C-----CEEEEeHHHcEeCC
Confidence 345567999999999853 57899999999998778999988742 2 24678999999986
No 26
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=94.76 E-value=0.16 Score=35.41 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=45.3
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
.+++|+.++|+-.. ++.|-=|+|.+++.+++.|+|.=+|= + ..-.++.+.|.|||.
T Consensus 3 ~~~~G~~c~A~~s~----Dg~wYrA~I~~i~~~~~~~~V~f~DY---G-----n~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 3 QWKVGDKCSAIWSE----DGCIYPATIASIDFKRETCVVVYTGY---G-----NREEQNLSDLLSPIC 58 (59)
T ss_dssp CCCTTCEEEEECTT----TSCEEEEEEEEEETTTTEEEEEETTT---T-----EEEEEEGGGCBCTTC
T ss_pred cCCcCCEEEEEECC----CCCEEEEEEEEEcCCCCEEEEEEEcC---C-----CEEEEcHHHeeCCCC
Confidence 36899999999753 57899999999987678999988742 2 245888999999985
No 27
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=94.67 E-value=0.027 Score=42.60 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
...+|+.|+|.|++-..||||.|.+... .+.+.|.|-|-.
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~---~~~~~V~fvDyG 66 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE---NGNLDLYFVDFG 66 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT---TSCEEEEETTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC---CCeEEEEEEcCC
Confidence 4789999999999999999999999842 357999998864
No 28
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=94.10 E-value=0.21 Score=37.01 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=44.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
..++|+.++|+-.. ++.|--|+|.+++..++.|.|.=+|= ++ .-.++.+.|.|||.
T Consensus 17 ~~kvGd~C~A~ys~----Dg~wYRA~I~~i~~~~~~~~V~fvDY---GN-----~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 17 MWKPGDECFALYWE----DNKFYRAEVEALHSSGMTAVVKFIDY---GN-----YEEVLLSNIKPIQT 72 (77)
T ss_dssp TCCTTCEEEEEETT----TTEEEEEEEEEECTTSSEEEEEETTT---CC-----EEEEEGGGEECC--
T ss_pred CCCcCCEEEEEECC----CCCEEEEEEEEEeCCCCEEEEEEEcC---CC-----eEEEeHHHeEECCh
Confidence 46899999999853 57899999999987778999998852 22 45799999999995
No 29
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=93.83 E-value=0.4 Score=35.40 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=46.2
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
...++|+.|+|+-.. ++.|-=|+|++++...+.|.|.=+|= + ..-.++.+.|.|||.
T Consensus 8 ~~~~~G~~c~A~~s~----Dg~wYRA~I~~i~~~~~~~~V~fiDY---G-----N~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 8 KVWKPGDECFALYWE----DNKFYRAEVEALHSSGMTAVVKFTDY---G-----NYEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCTTCEEEEECTT----TCCEEEEEEEEECSSSSEEEEEETTT---T-----EEEEEEGGGEEECCC
T ss_pred cCCCcCCEEEEEECC----CCCEEEEEEEEEeCCCCEEEEEEEcC---C-----CeEEEcHHHeEeCCH
Confidence 346899999999763 57899999999987678899998842 2 356788999999995
No 30
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.81 E-value=0.32 Score=37.09 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=47.2
Q ss_pred cccccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 123 QLDTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 123 ~~~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
.|..+..+.|+.|||+... +..|-=|+|.+.+.++ +.||.=+|= |+ .-+++..++-|||.
T Consensus 16 ~~~~~~~k~g~~vaak~~d----~n~WyRakV~~v~~~~-~veVl~~Dy---Gn-----~~~V~~~~LR~L~~ 75 (85)
T 2eqk_A 16 KWEPVKWENDMHCAVKIQD----KNQWRRGQIIRMVTDT-LVEVLLYDV---GV-----ELVVNVDCLRKLEE 75 (85)
T ss_dssp CCCCCCCCSSCEEEEECSS----SCCEEEEEEEEECSSS-EEEEECTTT---CC-----EEEEETTTEEECCH
T ss_pred CCcccCccCCCEEEEEeCC----CCeEEEEEEEEecCCC-eEEEEEEcc---CC-----EEEEEccccccCCH
Confidence 3556778999999999873 3599999999998764 599999853 22 34777889999973
No 31
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=93.78 E-value=0.078 Score=41.20 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=34.1
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
.+.+|+.|+|.|.+-..||||.|.+... .+.|.|.|-|-.
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~---~~~~~V~fvDyG 71 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLE---NGNLDLYFVDFG 71 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCS---SSCEEEEETTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC---CCeEEEEEEeCC
Confidence 4789999999999888999999998752 257999999863
No 32
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=93.34 E-value=0.48 Score=42.10 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=68.9
Q ss_pred cCCCCeeEEeeccCCCCCCCeEEEEEEeEeCC---------CCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCCC
Q 024333 129 SLKGEQVAARVTAENADKDEWFVVKVMHFDRE---------TKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDS 199 (269)
Q Consensus 129 ~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~---------~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~~ 199 (269)
.++|+.|-|+-.. .+.|+-|.|+++... .--|.|.=.| ..+. ....++.+.|.|-=... .
T Consensus 3 yki~~~vd~~d~~----~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~---~~~~---~~~~~~~~~irprar~~-~ 71 (226)
T 3ask_A 3 YKVNEYVDARDTN----MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDD---YPEN---GVVQMNSRDVRARARTI-I 71 (226)
T ss_dssp SCTTCEEEEECTT----TCCEEEEEEEEEEECC------CCCEEEEEEETT---CGGG---CEEEEEGGGEEECCCCB-C
T ss_pred cccCceEEeeecC----CCceeEEEEEEEeccccccCCCCCceEEEeeccc---Cccc---Cceeccccccccccccc-C
Confidence 4789999998653 589999999998652 3446654321 2222 25677777777754321 3
Q ss_pred CCCCCCCCCeEEEeC-CCCCc----ccceEEeccCCCCC--------------CCCeEEEecCC
Q 024333 200 SIPEFPPGRHVLAVY-PGTTA----LYKATVVSTPRKRK--------------TDDYLLEFDDD 244 (269)
Q Consensus 200 ~~~~f~kg~~VLAlY-P~TT~----FY~A~V~~~p~~~~--------------~~~Y~L~FeDd 244 (269)
.+.+++.|+.||+-| |++.. +|-|+|-.--..+. ...|.+.|.++
T Consensus 72 ~~~~l~~g~~vm~nyn~~~~~~~G~~y~~~I~~~~~~r~~~~~~a~i~l~g~sl~~c~i~f~~e 135 (226)
T 3ask_A 72 KWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDE 135 (226)
T ss_dssp CGGGCCTTCEEEEEECTTSTTSCCEEEEEEEEEEEECSSCEEEEEEEECSSSEEEEEEESCTTC
T ss_pred CccccccCcEEEEecccCCccccCceeehhhhhhhhcccccceeeEEEecCCcccceeEEEecc
Confidence 344699999999999 76543 58888776531111 12578888776
No 33
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.05 E-value=0.1 Score=39.92 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=37.1
Q ss_pred CCCCCCCCCCeEEEeCC---CCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 199 SSIPEFPPGRHVLAVYP---GTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 199 ~~~~~f~kg~~VLAlYP---~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
++.+.|..|++|++.++ ....+|.|+|...-.......|-|.|.|=
T Consensus 5 ~~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~ 53 (87)
T 2eko_A 5 SSGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDF 53 (87)
T ss_dssp CSSCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSS
T ss_pred cccccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCC
Confidence 45678999999999997 58899999999874333345699999884
No 34
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=92.91 E-value=0.45 Score=32.36 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=39.9
Q ss_pred cCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeec
Q 024333 129 SLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPF 193 (269)
Q Consensus 129 ~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPL 193 (269)
.++|+.++|+-.. ++.|-=|+|.+++.+++.|+|.=+|= ++ .-.++.+.|-||
T Consensus 2 wk~G~~c~A~~s~----Dg~wYrA~I~~i~~~~~~~~V~fvDY---Gn-----~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWE----DNKFYRAEVEALHSSGMTAVVKFIDY---GN-----YEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETT----TTEEEEEEEEEC--CCSEEEEEETTT---CC-----EEEEEGGGEECC
T ss_pred CCCCCEEEEEECC----CCCEEEEEEEEEeCCCCEEEEEEEcc---CC-----eEEEeHHHEEEC
Confidence 4789999999853 57899999999987778899998752 22 346777777775
No 35
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.80 E-value=0.48 Score=34.97 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=43.7
Q ss_pred ccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 126 TCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 126 ~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
...+++|+.|.|+-. ++.|.-|+|.+++.+ +.|.|.=. |.+ .-+++.++|.|||.
T Consensus 7 ~~~~kvGd~clA~ws-----Dg~~Y~A~I~~v~~~-~~~~V~f~----Dyn-----~e~v~~~~lrplp~ 61 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-----DCRYYPAKIEAINKE-GTFTVQFY----DGV-----IRCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCCTTCEEEEECS-----SSSEEEEEEEEESTT-SSEEEEET----TSC-----EEEECGGGEECCCG
T ss_pred CCCCCCCCEEEEECC-----CCCEEEEEEEEECCC-CEEEEEEe----cCC-----eEEecHHHCeeCCh
Confidence 345789999999975 378999999999865 67999765 222 35789999999996
No 36
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.66 E-value=0.49 Score=36.04 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=45.4
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 196 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~ 196 (269)
...++|+.|+|+-.. ++.|.-|+|.+++.+.+.|.|.=+|= ++ .-.++.+.|.|||..
T Consensus 9 ~~~kvGd~C~A~ys~----Dg~wYrA~I~~i~~~~~~~~V~fiDY---GN-----~E~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSE----DGCIYPATIASIDFKRETCVVVYTGY---GN-----REEQNLSDLLSPICE 66 (88)
T ss_dssp CCCCSSCEEEEECTT----TCCEEEEEEEEEETTTTEEEEEETTT---CC-----EEEEEGGGCBCCC--
T ss_pred CCCCCCCEEEEEECC----CCCEEEEEEEEecCCCCEEEEEEecC---CC-----EEEEcHHHcccCChh
Confidence 357899999999863 57999999999988778899988742 22 357889999999853
No 37
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=92.37 E-value=0.049 Score=40.55 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEEeCCCC--CcccceEEeccCCCCCCCCeEEEecCC
Q 024333 201 IPEFPPGRHVLAVYPGT--TALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~T--T~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
...|..|++|++.++++ ..+|+|.|...-.......|.|.|.|=
T Consensus 3 ~~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gw 48 (76)
T 2lcc_A 3 MEPCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGW 48 (76)
T ss_dssp CCCSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTS
T ss_pred ccccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCc
Confidence 46799999999999964 689999999874222234599999874
No 38
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=91.09 E-value=0.66 Score=37.33 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=73.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCCCCCCCCCCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPG 207 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~~~~~~f~kg 207 (269)
.+..|+.|-||.+. +.+..|+|++... ..|...+-+ |+ .-...|....|+--.- .....-+.|
T Consensus 5 ~v~vGq~V~akh~n-----gryy~~~V~~~~~--~~~y~V~F~---Dg----S~s~dl~peDIvs~dc---~~~GpP~~G 67 (118)
T 2qqr_A 5 SITAGQKVISKHKN-----GRFYQCEVVRLTT--ETFYEVNFD---DG----SFSDNLYPEDIVSQDC---LQFGPPAEG 67 (118)
T ss_dssp CCCTTCEEEEECTT-----SSEEEEEEEEEEE--EEEEEEEET---TS----CEEEEECGGGBCSSCH---HHHCCCCTT
T ss_pred eeccCCEEEEECCC-----CCEEeEEEEEEee--EEEEEEEcC---CC----CccCCCCHhhcccccc---cccCCCCCC
Confidence 46889999998773 5677999999753 334444653 22 2345555555543321 111235789
Q ss_pred CeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024333 208 RHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 265 (269)
Q Consensus 208 ~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe 265 (269)
+.|.=+|++=. .|.|+..+.-. .-.|.|.|||.. ++.++..-|-...|
T Consensus 68 ~~V~V~W~DG~-~y~a~f~g~~~---~~~Y~V~feDgs------~~~~kR~~iyt~~E 115 (118)
T 2qqr_A 68 EVVQVRWTDGQ-VYGAKFVASHP---IQMYQVEFEDGS------QLVVKRDDVYTLDE 115 (118)
T ss_dssp CEEEEECTTSC-EEEEEEEEEEE---EEEEEEEETTSC------EEEECGGGEEETTS
T ss_pred CEEEEEcCCCC-EeeeEEeceeE---EEEEEEEECCCC------EEEEcHHHeecccc
Confidence 99999999976 89999887632 346999999974 35666666655544
No 39
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=90.34 E-value=0.33 Score=40.38 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=34.3
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
...+|+.|+|.|++--.+|||.|.+... .+.+.|.|-|-.
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~---~~~~~V~fvDyG 86 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLD---DGKCEVHFIDFG 86 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECS---TTCEEEEETTTT
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECC---CCEEEEEEEecC
Confidence 5789999999999989999999999853 236999998863
No 40
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=90.24 E-value=1.2 Score=33.20 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=44.6
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
...++|+.|||+-.. ++.|-=|+|+++.+ ++.++|.=+|= | ..-.++.++|-|||.
T Consensus 26 ~~~~~G~~c~a~~~~----d~~wyRA~I~~~~~-~~~~~V~fvDy---G-----n~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPT----NGSWYRARVLGTLE-NGNLDLYFVDF---G-----DNGDCPLKDLRALRS 81 (94)
T ss_dssp CCCCTTCEEEEEETT----TTEEEEEEEEEECT-TSCEEEEETTT---C-----CEEEECGGGCEECCG
T ss_pred CCCCCCCEEEEEECC----CCeEEEEEEEEECC-CCeEEEEEEcC---C-----CeEEEEHHHhhhcCH
Confidence 446899999998752 57999999999964 46899998853 2 246789999999995
No 41
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=89.13 E-value=0.32 Score=41.13 Aligned_cols=85 Identities=21% Similarity=0.143 Sum_probs=52.4
Q ss_pred CeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEecc--CceeecCCCCCCCCCCCCCCCeEEEeCCCCCcccceEE
Q 024333 148 EWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHM--SFIIPFPKRNDSSIPEFPPGRHVLAVYPGTTALYKATV 225 (269)
Q Consensus 148 ~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~--~~IIPLP~~~~~~~~~f~kg~~VLAlYP~TT~FY~A~V 225 (269)
+++-+.|+.+.. .+.|-|+.++.+..=+ .-.-.+.. +.--|+|. .-...+|+.|+|.|.+--+||||.|
T Consensus 3 ~~~~V~Vt~v~~-p~~f~vq~~~~~~~l~---~l~~~l~~~~~~~~~~~~-----~~~~~~g~~c~a~~~~d~~wyRa~V 73 (218)
T 2wac_A 3 NYENVIVTEITE-TLTFFAQSVESGSKLE---SLMSKLHADFQSNPPIAG-----SYTPKRGDLVAAQFTLDNQWYRAKV 73 (218)
T ss_dssp CCEEEEEEEECT-TSEEEEEEGGGHHHHH---HHHHHHHHHHHHSCCCTT-----SCCCCTTCEEEEECTTTCCEEEEEE
T ss_pred ceEEEEEEEEcC-CCEEEEEECCCHHHHH---HHHHHHHHHHhhCCCCCC-----CccCCcCCEEEEEECCCCeEEEEEE
Confidence 466677777764 4679999874210000 00000110 11112321 1236799999999998889999999
Q ss_pred eccCCCCCCCCeEEEecCCC
Q 024333 226 VSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 226 ~~~p~~~~~~~Y~L~FeDd~ 245 (269)
.+.. + +.+.|.|-|..
T Consensus 74 ~~v~-~---~~~~V~~vDyG 89 (218)
T 2wac_A 74 ERVQ-G---SNATVLYIDYG 89 (218)
T ss_dssp EEEE-T---TEEEEEETTTC
T ss_pred EEec-C---CeEEEEEEecC
Confidence 9984 2 67999998863
No 42
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=88.48 E-value=0.38 Score=37.73 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCCCCCCCCCeEEEeCCC---CCcccceEEeccCCC-----CCCCCeEEEecCCCCCCCCCcccccCceEeeCC
Q 024333 199 SSIPEFPPGRHVLAVYPG---TTALYKATVVSTPRK-----RKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLP 264 (269)
Q Consensus 199 ~~~~~f~kg~~VLAlYP~---TT~FY~A~V~~~p~~-----~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p 264 (269)
..-|.|.+|..||+.+|+ --..|.|.|...-.. .....|.|.|.|=.. +=...||+-.|+.+-
T Consensus 15 ~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~---rwDEWV~edRilk~~ 85 (101)
T 3m9q_A 15 DETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRP---SYDRAVRATVLLKDT 85 (101)
T ss_dssp CCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCG---GGCEEECGGGEEECC
T ss_pred cCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCc---CceeecCHHHcccCC
Confidence 345679999999999987 568999999987321 112469999987320 011367777776653
No 43
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=88.47 E-value=2.3 Score=35.68 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=62.1
Q ss_pred cCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCCCCCCCCCCCC
Q 024333 129 SLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPGR 208 (269)
Q Consensus 129 ~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~~~~~~f~kg~ 208 (269)
...|..|-|+-.. +.-|.-++|.++- .+++|+|.=. |+. .-++..++|+-. ..||+|.
T Consensus 9 ~~iG~rVfArWsd----~~yyYpG~V~~~~-~~~~Y~V~Fd----DG~-----~k~v~~~divv~--------~~LP~~~ 66 (156)
T 1ssf_A 9 SFVGLRVVAKWSS----NGYFYSGKITRDV-GAGKYKLLFD----DGY-----ECDVLGKDILLC--------DPIPLDT 66 (156)
T ss_dssp CSTTCEEEECSSC----SSEEEEEEEEECC-TTTEEEEECT----TSC-----EEEEETTTEEEE--------CCSCSSE
T ss_pred chhccEEEEEcCC----CCcccccEEEEec-cCCEEEEEEc----CCC-----eeEeeccceEEE--------eccCCCc
Confidence 4689999998873 3577799999974 5689999542 322 346665666531 1345679
Q ss_pred eEEEeCCCCCcccceEEeccCCC-CCCCCeEEEecCC
Q 024333 209 HVLAVYPGTTALYKATVVSTPRK-RKTDDYLLEFDDD 244 (269)
Q Consensus 209 ~VLAlYP~TT~FY~A~V~~~p~~-~~~~~Y~L~FeDd 244 (269)
.|+|+ ..-+||-+.|+..... .....|.|++++.
T Consensus 67 ~V~A~--~~ddy~s~giI~~h~~~~~e~~Y~Ve~~G~ 101 (156)
T 1ssf_A 67 EVTAL--SEDEYFSAGVVKGHRKESGELYYSIEKEGQ 101 (156)
T ss_dssp EEEES--SCTTTCEEEEEEEEEEETTEEEEEEEETTE
T ss_pred EEEEc--cCCccccccEEEeecCCCCcEEEEEEeCCc
Confidence 99999 6678888888875321 1234599999554
No 44
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=88.20 E-value=0.51 Score=36.55 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=34.2
Q ss_pred CCCCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 199 SSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 199 ~~~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
.+.+.|..|++|++.. .-.+|.|+|...-.......|-|.|.|=
T Consensus 21 ~~~~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~ 64 (94)
T 2rnz_A 21 MSVDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNY 64 (94)
T ss_dssp SCGGGCCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTS
T ss_pred cccccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCc
Confidence 4445699999999996 6789999999874333345699999884
No 45
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=87.77 E-value=0.66 Score=33.35 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=32.4
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
..|.+|.+|-|+-+.-.. |.|+|...- .....+.|.|+|-
T Consensus 11 ~~F~vGmkLEa~d~~~p~-~~AtV~~v~--~~~~~~~VhfdGw 50 (69)
T 3sd4_A 11 ISFEVGAQLEARDRLKNW-YPAHIEDID--YEEGKVLIHFKRW 50 (69)
T ss_dssp CCCSTTCEEEEECTTSCE-EEEEEEEEE--TTTTEEEEEETTS
T ss_pred CCcCCCCEEEEEECCCCc-cccEEEEEe--ccCCEEEEEeCCC
Confidence 359999999999998777 999999862 1235699999874
No 46
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=87.08 E-value=0.54 Score=39.96 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
....|+.++|.|++--.+|||.|..... .+.+.|.|-|-.
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~---~~~~~V~~vDyG 104 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILP---SGNVKVHFVDYG 104 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT---TSCEEEEETTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC---CCeEEEEEEccC
Confidence 3568999999999999999999998642 356999998863
No 47
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=86.97 E-value=5.6 Score=32.13 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=58.6
Q ss_pred CCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCcee---ecCCCCCCCCCCCCC
Q 024333 130 LKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFII---PFPKRNDSSIPEFPP 206 (269)
Q Consensus 130 ~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~II---PLP~~~~~~~~~f~k 206 (269)
..|-.|-|+-.. +..|.-++|++.- .++||.|.=- |+. .-++..+.|| ||| .
T Consensus 6 ~~G~rV~AkWsd----n~~yYpG~V~~~~-~~~ky~V~Fd----Dg~-----~~~v~~k~iiv~d~ip-----------~ 60 (123)
T 2g3r_A 6 FVGLRVVAKWSS----NGYFYSGKITRDV-GAGKYKLLFD----DGY-----ECDVLGKDILLCDPIP-----------L 60 (123)
T ss_dssp CTTCEEEEECTT----TCCEEEEEEEEEE-ETTEEEEEET----TSC-----EEEEEGGGEECCSSCC-----------T
T ss_pred ccceEEEEEecc----CCcCcccEEEEec-cCCeEEEEEc----CCC-----eeEeecceEEEecccC-----------C
Confidence 468888888763 3579999999964 4689999542 222 3577899999 776 5
Q ss_pred CCeEEEeCCCCCcccc-eEEeccCCCCCCCCeEEEecC
Q 024333 207 GRHVLAVYPGTTALYK-ATVVSTPRKRKTDDYLLEFDD 243 (269)
Q Consensus 207 g~~VLAlYP~TT~FY~-A~V~~~p~~~~~~~Y~L~FeD 243 (269)
|+-|+|+= +-+||- ++|..-.+....-.|.|+-|+
T Consensus 61 g~~V~A~t--eddy~~~GiI~~~k~~~~e~~Y~Ve~dG 96 (123)
T 2g3r_A 61 DTEVTALS--EDEYFSAGVVKGHRKESGELYYSIEKEG 96 (123)
T ss_dssp TCEEEEEC--TTSCEEEEEEEEEEEETTEEEEEEEETT
T ss_pred CcEEEEee--cCccccceEEEEEecCCCeEEEEEEeCC
Confidence 89999998 446665 555544322222338888533
No 48
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=86.73 E-value=6.5 Score=31.83 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=61.7
Q ss_pred CCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCCCCCCCCCCCCeEE
Q 024333 132 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPGRHVL 211 (269)
Q Consensus 132 G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~~~~~~f~kg~~VL 211 (269)
|..|-.+-. .+.|.-|.|..+.. +.+-|.=. + +- +..-+++.++|-|-|.. ...+.|..|+.|=
T Consensus 5 ~~~VEV~~~-----~G~~y~a~V~~v~~--d~~~V~f~----n-~w--~~~~~vp~~~vRlpP~~--~~~~~f~~gd~VE 68 (128)
T 3h8z_A 5 GLPVEVRGS-----NGAFYKGFVKDVHE--DSVTIFFE----N-NW--QSERQIPFGDVRLPPPA--DYNKEITEGDEVE 68 (128)
T ss_dssp TCEEEEECT-----TSCEEEEEEEEECS--SEEEEEET----T-CT--TCCEEEEGGGEECCCCC------CCCTTCEEE
T ss_pred ccEEEEecC-----CCCEEEEEEEEEeC--CcEEEEEc----c-cc--CcceEechhhEEcCCCc--ccccCCCCCCEEE
Confidence 445555432 47899999988743 34555332 1 11 22457888888887764 3457899999999
Q ss_pred EeCCCC---C-cccceEEeccCCCCCCCCeEEEecC
Q 024333 212 AVYPGT---T-ALYKATVVSTPRKRKTDDYLLEFDD 243 (269)
Q Consensus 212 AlYP~T---T-~FY~A~V~~~p~~~~~~~Y~L~FeD 243 (269)
++.... + +.|+|+|...- .+.|.|.|.+
T Consensus 69 V~~~~~d~ep~gWw~a~I~~~k----g~f~~V~y~~ 100 (128)
T 3h8z_A 69 VYSRANEQEPCGWWLARVRMMK----GDFYVIEYAA 100 (128)
T ss_dssp EEECC---CCCEEEEEEEEEEE----TTEEEEEETT
T ss_pred EEecCCCCCcCccEEEEEEEee----CCEEEEEEcC
Confidence 999753 3 59999999873 4689999877
No 49
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=86.16 E-value=0.14 Score=38.78 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=41.0
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEGH 267 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~pe~~ 267 (269)
-+.|..|++||+.+.+ .+|.|.|...-.......|.|.|.|=.- .=.-.||.--|+..-+.+
T Consensus 10 ~~~~~~Gekv~~~~~~--~~y~AkIl~i~~~~~~~~YyVHY~GwNk---R~DEWV~~~Rl~k~t~en 71 (85)
T 2lrq_A 10 NTLFVDGERVLCFHGP--LIYEAKVLKTKPDATPVEYYIHYAGWSK---NWDEWVPENRVLKYNDDN 71 (85)
Confidence 3569999999999976 5799999987432234569999987320 001256665555544433
No 50
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=86.05 E-value=0.47 Score=37.22 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=39.1
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPL 263 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~ 263 (269)
-+.|..|++||+.+ ...+|.|.|...-.......|.|.|.|=.. .=.-.||.-.|+..
T Consensus 20 ~~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNk---R~DEWV~~~Rl~k~ 77 (102)
T 2f5k_A 20 KPKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWNK---NWDEWVPESRVLKY 77 (102)
T ss_dssp SCSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSCG---GGCEEEEGGGEEES
T ss_pred CcccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCC---CceeeccHhhcccC
Confidence 46799999999998 468999999987422233469999987420 00125665555543
No 51
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=85.75 E-value=0.53 Score=40.76 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
...+|+.++|.|++--+||||.|..... .+.+.|.|-|-.
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~---~~~~~V~~vDyG 104 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILP---SGNVKVHFVDYG 104 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECS---SSEEEEECTTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC---CCeEEEEEEecC
Confidence 3568999999999999999999998742 356999998863
No 52
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=85.71 E-value=0.75 Score=36.62 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=39.7
Q ss_pred CCCCCCCeEEEeCCCCC---cccceEEeccCCCC-C----CCCeEEEecCCCCCCCCCcccccCceEeeC
Q 024333 202 PEFPPGRHVLAVYPGTT---ALYKATVVSTPRKR-K----TDDYLLEFDDDEEDGALPQRTVPFHNVVPL 263 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT---~FY~A~V~~~p~~~-~----~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~ 263 (269)
+.|..|.+||+..|+++ -.|-|.|...-... . ...|.|.|.|=.. .=...||+-.|+.+
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~---~WDEWV~~drllk~ 84 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR---SWDRWAAEDHVLRD 84 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCG---GGCEEEEGGGEEEC
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCc---chhhccChhhhhcC
Confidence 46999999999999965 79999998752110 1 1249999987320 00136777666654
No 53
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=85.06 E-value=0.62 Score=37.10 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCCCCCCCCeEEEeCCC---CCcccceEEeccCCCCC-----CCCeEEEecCCCCCCCCCcccccCceEeeCC
Q 024333 200 SIPEFPPGRHVLAVYPG---TTALYKATVVSTPRKRK-----TDDYLLEFDDDEEDGALPQRTVPFHNVVPLP 264 (269)
Q Consensus 200 ~~~~f~kg~~VLAlYP~---TT~FY~A~V~~~p~~~~-----~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p 264 (269)
..|.|..|.+||+.+++ +-.+|.|.|+..-.... ...|.|.|.|=.. .=...||.-.|+..-
T Consensus 16 ~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~---~wDEWV~e~rllk~~ 85 (110)
T 3m9p_A 16 MKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR---SWDRWAAEDHVLRDT 85 (110)
T ss_dssp --CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCG---GGCEEEEGGGEEECC
T ss_pred CCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCc---chhhccCHhhhhcCC
Confidence 34679999999999987 35799999998732111 1359999987320 012367877777653
No 54
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=84.92 E-value=1.1 Score=34.35 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=34.2
Q ss_pred CCCCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 199 SSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 199 ~~~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
.+...|..|++|++.. .-.+|.|.|...-.......|-|.|.|=
T Consensus 19 ~~~~~~~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~ 62 (92)
T 2ro0_A 19 NSVDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNY 62 (92)
T ss_dssp SCTTSCCTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTS
T ss_pred cccccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCc
Confidence 3445699999999996 6789999999874333345699999884
No 55
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=84.62 E-value=2.2 Score=32.85 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=43.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
...+|+.|||+.. +++.|.=|+|+++.++ +.|+|.=+|= + ..-.++.++|-+||.
T Consensus 32 ~~~~G~~c~a~~~----~d~~wyRA~V~~~~~~-~~~~V~fvDy---G-----n~e~v~~~~Lr~l~~ 86 (110)
T 2diq_A 32 TVHVGDIVAAPLP----TNGSWYRARVLGTLEN-GNLDLYFVDF---G-----DNGDCPLKDLRALRS 86 (110)
T ss_dssp CCCTTCEEEECCT----TTCSCEEEEECCCCSS-SCEEEEETTT---C-----CEEEECGGGCEECCH
T ss_pred CCCCCCEEEEEEC----CCCeEEEEEEEEECCC-CeEEEEEEeC---C-----CeEEEehHHhhcCcH
Confidence 4689999999875 2578999999998753 6799998853 2 256889999999985
No 56
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=84.19 E-value=0.74 Score=37.06 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=33.5
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
.+....|++|.|-.+ ..-||+|+|.+.- ....|.|.|+|-
T Consensus 3 ~~~v~vGq~V~akh~-ngryy~~~V~~~~---~~~~y~V~F~Dg 42 (118)
T 2qqr_A 3 MQSITAGQKVISKHK-NGRFYQCEVVRLT---TETFYEVNFDDG 42 (118)
T ss_dssp SSCCCTTCEEEEECT-TSSEEEEEEEEEE---EEEEEEEEETTS
T ss_pred cceeccCCEEEEECC-CCCEEeEEEEEEe---eEEEEEEEcCCC
Confidence 467899999999988 6789999999983 236799999875
No 57
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=83.65 E-value=0.31 Score=39.53 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
.+....|+.|.|-.++ .-||+|+|.+.- ....|.|.|+|.
T Consensus 4 ~~~v~vGq~V~ak~~n-gryy~~~V~~~~---~~~~y~V~F~Dg 43 (123)
T 2xdp_A 4 EKVISVGQTVITKHRN-TRYYSCRVMAVT---SQTFYEVMFDDG 43 (123)
T ss_dssp CCCCCTTCCCCCCCCC-CCCCCCEEEEEE---EEEEEEEEETTS
T ss_pred ccccccCCEEEEECCC-CcEEeEEEEEEe---eEEEEEEEcCCC
Confidence 4678999999999986 899999999984 246799999875
No 58
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=83.47 E-value=7 Score=27.67 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=41.4
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeec
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPF 193 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPL 193 (269)
.+..|+.|-|+-+ ++.+.|+.|+.++....+|-|.=. |+ ..+-+.++.|-++
T Consensus 3 ~f~~GedVLarws-----DG~fYlGtI~~V~~~~~~clV~F~----D~-----s~~W~~~kdi~~~ 54 (58)
T 4hcz_A 3 RLWEGQDVLARWT-----DGLLYLGTIKKVDSAREVCLVQFE----DD-----SQFLVLWKDISPA 54 (58)
T ss_dssp SCCTTCEEEEECT-----TSCEEEEEEEEEETTTTEEEEEET----TS-----CEEEEEGGGEEEC
T ss_pred ccccCCEEEEEec-----CCCEEeEEEEEEecCCCEEEEEEc----CC-----CeEEEEhHHcccc
Confidence 4678999999986 589999999999998889999764 21 2567777777665
No 59
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=82.46 E-value=6.2 Score=29.93 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=43.6
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 196 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~ 196 (269)
..+++|+.|-|+=. +..|.=|+|++++++ +.|.|.=- | + ..-+|....|.|||+.
T Consensus 20 ~~f~vGd~VlArW~-----D~~yYPAkI~sV~~~-~~YtV~F~----D--G---~~etvk~~~IKp~~~~ 74 (85)
T 3qii_A 20 SEFQINEQVLACWS-----DCRFYPAKVTAVNKD-GTYTVKFY----D--G---VVQTVKHIHVKAFSKD 74 (85)
T ss_dssp -CCCTTCEEEEECT-----TSCEEEEEEEEECTT-SEEEEEET----T--S---CEEEEEGGGEEECC--
T ss_pred cccccCCEEEEEeC-----CCCEeeEEEEEECCC-CeEEEEEe----C--C---CeEEecHHHcccCChh
Confidence 35789999999982 579999999999876 67999764 2 2 3679999999999973
No 60
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=81.36 E-value=1 Score=36.72 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCC--CCCCCCeEEEecC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPR--KRKTDDYLLEFDD 243 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~--~~~~~~Y~L~FeD 243 (269)
.+.|..|++||+.++ .-.+|.|.|...-. ......|.|.|.|
T Consensus 10 ~~~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~g 53 (133)
T 1wgs_A 10 EVTVEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVG 53 (133)
T ss_dssp CCCCCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTT
T ss_pred ccccCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccC
Confidence 346999999999997 45899999998521 1123469999986
No 61
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=82.12 E-value=0.3 Score=36.85 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=42.2
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 196 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~ 196 (269)
.+++||.|.|+-. ++.|.=|+|.+++.+ +.|+|.=.| + ..-+++.++|.|||+.
T Consensus 6 ~~kvGd~clAkws-----Dg~wY~A~I~~v~~~-~~y~V~F~D-G--------n~E~V~~s~LrPl~~~ 59 (81)
T 2ldm_A 6 EFQINEQVLASWS-----DSRFYPAKVTAVNKD-GTYTVKFYD-G--------VVQTVKHIHVKAFSKD 59 (81)
Confidence 4688999999876 368999999999754 579987653 2 2347888999999964
No 62
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=81.03 E-value=6.1 Score=33.04 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=42.9
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
...+|+.|+|+... ++.|.=|+|+++.. +.+.|.=+|- | ..-.++.++|-|||.
T Consensus 51 ~~~~g~~c~a~~~~----d~~wyRa~V~~v~~--~~~~V~~vDy---G-----~~~~v~~~~l~~l~~ 104 (218)
T 2wac_A 51 TPKRGDLVAAQFTL----DNQWYRAKVERVQG--SNATVLYIDY---G-----NKETLPTNRLAALPP 104 (218)
T ss_dssp CCCTTCEEEEECTT----TCCEEEEEEEEEET--TEEEEEETTT---C-----CEEEEEGGGEEECCG
T ss_pred cCCcCCEEEEEECC----CCeEEEEEEEEecC--CeEEEEEEec---C-----CeEEEchHHcccCCh
Confidence 35789999999762 47899999999976 7799988752 2 245788899999985
No 63
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=80.61 E-value=8.6 Score=27.80 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=43.0
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 196 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~ 196 (269)
.+++|+.|-|+=. +..|.=|+|.+++++ +.|.|.=. |+ ..-++..+.|.|+|+.
T Consensus 6 ~~~vGd~vmArW~-----D~~yYpA~I~si~~~-~~Y~V~F~----dG-----~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 6 EFQINEQVLACWS-----DCRFYPAKVTAVNKD-GTYTVKFY----DG-----VVQTVKHIHVKAFSKD 59 (67)
T ss_dssp CCCTTCEEEEECT-----TSCEEEEEEEEECTT-SEEEEEET----TS-----CEEEEEGGGEEECC--
T ss_pred ccccCCEEEEEcC-----CCCEeeEEEEEECCC-CeEEEEEe----CC-----ceEEEeHHHcccCCcc
Confidence 4689999999972 579999999999876 67999764 21 3569999999999973
No 64
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=79.64 E-value=0.75 Score=40.54 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=33.5
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
+.++..|..|||.. -|-++|+|+|..--+....-.|.|+|++.
T Consensus 6 ~~~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~~g~~YkVkF~~~ 48 (213)
T 3dlm_A 6 QGDLIVSMRILGKK-RTKTWHKGTLIAIQTVGPGKKYKVKFDNK 48 (213)
T ss_dssp ETTEETTCEEEEEC-TTSBEEEEEEEEEEEETTEEEEEEEESSS
T ss_pred cCcEEEccEEEEEe-cCCcEEEEEEEEEEECCCCeEEEEEEcCC
Confidence 35688999999999 77999999999843222234599999964
No 65
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=79.54 E-value=5.2 Score=29.92 Aligned_cols=40 Identities=20% Similarity=0.138 Sum_probs=34.4
Q ss_pred cccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecC
Q 024333 125 DTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDE 169 (269)
Q Consensus 125 ~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~ 169 (269)
+...+..|+.|-++-+ ++.+.|+.|+.++....+|-|.=.
T Consensus 23 p~~~f~eGeDVLarws-----DGlfYLGTI~kV~~~~e~ClV~F~ 62 (79)
T 2m0o_A 23 PRPRLWEGQDVLARWT-----DGLLYLGTIKKVDSAREVCLVQFE 62 (79)
T ss_dssp CCCCCCTTCEEEBCCT-----TSCCCEEEEEEEETTTTEEEEEET
T ss_pred CcceeccCCEEEEEec-----CCCEEeEEEEEeccCCCEEEEEEc
Confidence 3467899999999876 589999999999998899999754
No 66
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=78.34 E-value=7.8 Score=32.62 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=43.4
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
..++|+.+||+... ++.|.=|+|+++.+ .+.++|.=+|= | ..-.++.++|-+||.
T Consensus 65 ~~~~G~~c~a~~~~----d~~wyRa~V~~~~~-~~~~~V~~vDy---G-----~~~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 65 KAEIGRPCCAFFSG----DGNWYRALVKEILP-SGNVKVHFVDY---G-----NVEEVTTDQLQAILP 119 (201)
T ss_dssp CCCTTCEEEEEETT----TTEEEEEEEEEECT-TSCEEEEETTT---C-----CEEEECGGGEEECCG
T ss_pred CCCCCCEEEEEECC----CCeEEEEEEEEECC-CCeEEEEEEcc---C-----CEEEEEHHHhccChH
Confidence 35789999999863 57899999999865 35799999853 2 245789999999995
No 67
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.76 E-value=13 Score=26.95 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=43.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP 194 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP 194 (269)
.+..|+.|-|+-. ++.+.|+.|+.++....+|-|.=.| + ..+-+.++.|.++-
T Consensus 9 ~f~eGqdVLarWs-----DGlfYlGtV~kV~~~~~~ClV~FeD-----~----s~~wv~~kdi~~~~ 61 (68)
T 2e5p_A 9 RLWEGQDVLARWT-----DGLLYLGTIKKVDSAREVCLVQFED-----D----SQFLVLWKDISPAA 61 (68)
T ss_dssp CCCTTCEEEEECT-----TSSEEEEEEEEEETTTTEEEEEETT-----T----EEEEEETTTEECCC
T ss_pred ccccCCEEEEEec-----CCcEEEeEEEEEecCCcEEEEEEcc-----C----Ceeeeeeecccccc
Confidence 4789999999876 5899999999999988999997652 1 36888899988865
No 68
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=76.87 E-value=1.1 Score=36.18 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=64.5
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCCCCCCCCCCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPG 207 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~~~~~~f~kg 207 (269)
.+..|+.|-||.+ .+.+..|+|++... ..-|+| +-+ |+ .-...|....|+--.- .....-+.|
T Consensus 6 ~v~vGq~V~ak~~-----ngryy~~~V~~~~~-~~~y~V-~F~---Dg----S~s~dl~PedIvs~dc---~~~GpP~~G 68 (123)
T 2xdp_A 6 VISVGQTVITKHR-----NTRYYSCRVMAVTS-QTFYEV-MFD---DG----SFSRDTFPEDIVSRDC---LKLGPPAEG 68 (123)
T ss_dssp CCCTTCCCCCCCC-----CCCCCCCEEEEEEE-EEEEEE-EET---TS----CEEEEECGGGBCSSCH---HHHCCCCTT
T ss_pred ccccCCEEEEECC-----CCcEEeEEEEEEee-EEEEEE-EcC---CC----CccCCCCHhHcccccc---cccCCCCCC
Confidence 4688999998866 35677899999864 234555 553 22 2344555555532220 111346789
Q ss_pred CeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 208 RHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 208 ~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
+.|.=+|+|=. .|.|+..+.-. .-.|.|.|||..
T Consensus 69 ~~V~V~W~DG~-~y~a~f~g~~~---~~~YtV~FeDgs 102 (123)
T 2xdp_A 69 EVVQVKWPDGK-LYGAKYFGSNI---AHMYQVEFEDGS 102 (123)
T ss_dssp CEEEEECTTSC-EEEEEEEEEEE---EEEEEEECTTSC
T ss_pred CEEEEEcCCCC-EEeEEEeeeee---EEEEEEEECCCC
Confidence 99999999866 88999888742 346999999974
No 69
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=75.77 E-value=2.2 Score=36.96 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=34.5
Q ss_pred CCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCCCCCCCCCCCCeEEEeCCCCCcccceEE
Q 024333 146 KDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPGRHVLAVYPGTTALYKATV 225 (269)
Q Consensus 146 ~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~~~~~~f~kg~~VLAlYP~TT~FY~A~V 225 (269)
.+.++-+.|+.+.. .+.|-|+..+.+..=+.- ........+..-++|. .....+|+.|+|.|. -.+||||.|
T Consensus 15 ~~~~~~V~Vt~v~~-p~~f~vq~~~~~~~l~~l-~~~l~~~~~~~~~~~~-----~~~~~~G~~c~a~~~-d~~wyRa~V 86 (246)
T 2hqx_A 15 SASYKPVFVTEITD-DLHFYVQDVETGTQFQKL-MENMRNDIASHPPVEG-----SYAPRRGEFCIAKFV-DGEWYRARV 86 (246)
T ss_dssp ---------------------------CHHHHH-HHHHHHHHHHSCCCTT-----TCCCCTTCEEEEECT-TSCEEEEEE
T ss_pred CCCEEEEEEEEECC-CCEEEEEECCcHHHHHHH-HHHHHHHHhhCCCCCC-----CCCCCCCCEEEEEcC-CCCEEEEEE
Confidence 35788888888764 467888887421000000 0000000011112211 124679999999999 579999999
Q ss_pred eccCCCCCCCCeEEEecCCC
Q 024333 226 VSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 226 ~~~p~~~~~~~Y~L~FeDd~ 245 (269)
..... .+.+.|.|-|-.
T Consensus 87 ~~~~~---~~~~~V~~vDyG 103 (246)
T 2hqx_A 87 EKVES---PAKIHVFYIDYG 103 (246)
T ss_dssp EEEEE---TTEEEEEETTTC
T ss_pred EEEcC---CCeEEEEEEeCC
Confidence 98742 257999998863
No 70
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=75.60 E-value=9 Score=32.86 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=43.8
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 196 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~ 196 (269)
...+|+.+||+... ++.|.=|+|+++.+ .+.++|.=+|= |+ .-.++.+.|.+||..
T Consensus 65 ~~~~G~~c~a~~~~----d~~WyRa~V~~~~~-~~~~~V~~vDy---Gn-----~~~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 65 KAEIGRPCCAFFSG----DGNWYRALVKEILP-SGNVKVHFVDY---GN-----VEEVTTDQLQAILPQ 120 (226)
T ss_dssp CCCTTCEEEEEETT----TTEEEEEEEEEECS-SSEEEEECTTT---CC-----EEEEEGGGEECCCGG
T ss_pred CCCCCCEEEEEECC----CCeEEEEEEEEECC-CCeEEEEEEec---CC-----EEEEEHHHhccChHH
Confidence 35789999999763 57899999999865 46799999853 22 457889999999953
No 71
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=75.45 E-value=3.1 Score=34.08 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=34.9
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCC---CCCCCeEEEecCCCCCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRK---RKTDDYLLEFDDDEEDGA 249 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~---~~~~~Y~L~FeDd~~~G~ 249 (269)
+|..|++|+|-..+ -.+.||.|..++.. .....|.|.|=|+.+-+.
T Consensus 22 ~f~~GdlVwaK~~g-~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~aw 70 (153)
T 4fu6_A 22 DFKPGDLIFAKMKG-YPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAF 70 (153)
T ss_dssp GCCTTCEEEECCTT-SCCEEEEECCCC---CCCCTTCEEEEETTTCCEEE
T ss_pred CCCCCCEEEEeCCC-CCCCCEEEeEchhhccCCCCCEEEEEecCCCCeEE
Confidence 59999999999865 67999999987632 224679999988754433
No 72
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*
Probab=74.81 E-value=7.4 Score=37.98 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhcCC-cccccCCCcchHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024333 12 LDKSRELDRLRKEQEDVLLEINKMHKKLHNT-PEVIEKPGDNSLTK---LKSLYIQAKELSENEVHVSNLL 78 (269)
Q Consensus 12 ~~~l~el~~lr~~~e~~l~~I~k~h~k~~~~-~e~~~k~s~~~~~k---L~~lY~~a~~~ae~E~~~~~~~ 78 (269)
...|-||+.|-.+|++.|.++--..+.+... |.. ......+- |...|++-+...+.|.+.|..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~ 78 (473)
T 1uur_A 11 QPILDTIYKLLSEQEQTLVQMIHEQSLLLNRLPPT---LDENSLAPLKSLSQKQITLSGQMNTEMSALDAT 78 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSS---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999986655555543 333 23444444 7778999999999999988877
No 73
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=71.11 E-value=27 Score=25.34 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=47.0
Q ss_pred ccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 126 TCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 126 ~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
...+..||.|-||=.. +..+.-|+|++++..+.-|.|.==+ + ..-+|..+.|-|+|.
T Consensus 10 ~~~f~vgd~VmaRW~G----d~~yYparItSits~~~~Y~VkfKd------g---T~e~L~~kDIKp~~~ 66 (68)
T 2dig_A 10 SRKFADGEVVRGRWPG----SSLYYEVEILSHDSTSQLYTVKYKD------G---TELELKENDIKSGPS 66 (68)
T ss_dssp CCSSCSSCEEEEECTT----TCCEEEEEEEEEETTTTEEEEECTT------S---CEEEEETTTEECCCC
T ss_pred ceEeecCCEEEEEccC----CccceEEEEEEeccCCceEEEEecC------C---CEEEechhccccCCC
Confidence 3457899999999872 4689999999999889999997642 1 357999999999995
No 74
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=69.42 E-value=28 Score=25.18 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=40.7
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceee
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIP 192 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIP 192 (269)
..++.|+.|-|+=. ++...+|.|++++...+.|-|+=.| + ..+-+.++.|.+
T Consensus 12 ~~f~vGddVLA~wt-----DGl~Y~gtI~~V~~~~gtC~V~F~D-----~----s~~w~~~kdi~~ 63 (66)
T 2eqj_A 12 CKFEEGQDVLARWS-----DGLFYLGTIKKINILKQSCFIIFED-----S----SKSWVLWKDIQT 63 (66)
T ss_dssp CCSCTTCEEEEECT-----TSCEEEEEEEEEETTTTEEEEEETT-----T----EEEEEETTTEEC
T ss_pred ccccCCCEEEEEEc-----cCcEEEeEEEEEccCCcEEEEEEcc-----C----CEEEEEeecccc
Confidence 45899999999864 5899999999999988999998652 1 346666666654
No 75
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.63 E-value=17 Score=26.04 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=42.0
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP 194 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP 194 (269)
.+..|+.|-|+-+ ++.++|+.|+.++....+|-|.=.| + ..+-+.++.|-++-
T Consensus 7 ~f~eGqdVLarWs-----DGlfYlgtV~kV~~~~~~ClV~FeD-----~----s~~wv~~kdi~~~~ 59 (63)
T 2e5q_A 7 GLTEGQYVLCRWT-----DGLYYLGKIKRVSSSKQSCLVTFED-----N----SKYWVLWKDIQHAG 59 (63)
T ss_dssp CCCTTCEEEEECT-----TSCEEEEEECCCCSTTSEEEEEETT-----S----CEEEEEGGGEECCS
T ss_pred ceecCCEEEEEec-----CCCEEEEEEEEEecCCCEEEEEEcc-----C----ceeEEEeecccccC
Confidence 4789999999876 5899999999999888999997652 1 24677778777653
No 76
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=67.96 E-value=7.1 Score=31.84 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEecc
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVST 228 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~ 228 (269)
-|.|.+|..|||.+=.+ .|.|.|...
T Consensus 5 ~p~f~~gE~VlcfHg~~--~YeAKIl~i 30 (130)
T 3e9g_A 5 EQEFALGGRCLAFHGPL--MYEAKILKI 30 (130)
T ss_dssp --CCCTTCEEEEEETTE--EEEEEEEEE
T ss_pred cccccCCCEEEEEeCCc--ceeeEEEEe
Confidence 36899999999999866 899999988
No 77
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=67.75 E-value=4.2 Score=35.98 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=37.4
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCC-------CCCCeEEEecCCCCCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKR-------KTDDYLLEFDDDEEDGA 249 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~-------~~~~Y~L~FeDd~~~G~ 249 (269)
-|..|+.|.|.-...-.||.|.|+..-+.. ..-.|.++|||..+.|.
T Consensus 2 ~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~ 55 (226)
T 3ask_A 2 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGV 55 (226)
T ss_dssp CSCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCE
T ss_pred ccccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCc
Confidence 488999999999999999999999875322 11349999999866554
No 78
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=66.65 E-value=17 Score=28.53 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCcccccCCCcchHHHHHHH
Q 024333 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKPGDNSLTKLKSL 60 (269)
Q Consensus 8 ~~~i~~~l~el~~lr~~~e~~l~~I~k~h~k~~~~~e~~~k~s~~~~~kL~~l 60 (269)
.+++..+-+||.+.+.+.+.....|+.+...+.. +++--+.|+.|||.+
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~----lEkERDFYF~KLRdI 51 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVST----LEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4567888899988888888888888887777765 346678999999985
No 79
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=65.95 E-value=6.5 Score=30.64 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCC---CCCCCeEEEecCCCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRK---RKTDDYLLEFDDDEE 246 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~---~~~~~Y~L~FeDd~~ 246 (269)
...|..|+.|+|-. ..-.++||.|...|.. ...+.|.|.|=|+.+
T Consensus 17 ~~~~~~GdlVwaK~-kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~ 64 (110)
T 1ri0_A 17 QKEYKCGDLVFAKM-KGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHE 64 (110)
T ss_dssp SSSCCTTCEEEEEE-TTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTE
T ss_pred cCCCCCCCEEEEEe-CCCCCCCEEEecccHhhcCCCCCEEEEEEecCCC
Confidence 44699999999986 4556899999987732 234679999987754
No 80
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=61.84 E-value=34 Score=27.56 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=41.0
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRND 198 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~ 198 (269)
..+..||.|-+..+..+.+.-.|-+|+|+...+ ..|-|.=..= +. .-.=.++..+|-|+|...|
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~---~~---~~~EiV~~~rlR~~n~~~p 122 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAAC---DA---TYNEIVTLERLRPVNPNPL 122 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC----------CEEECGGGEEECCCCCC
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCC---CC---CcceEEehhheEeCCCCCC
Confidence 567899999999886443434699999999875 4576653210 11 1223566889999987544
No 81
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=60.87 E-value=31 Score=28.16 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=39.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
..++|+.+||+-.. ++.|.=|+|.++.++ +.++|.=+|= |+ ... .++|-+||.
T Consensus 47 ~~~~G~~c~A~~~~----d~~wyRa~I~~~~~~-~~~~V~fvDy---Gn---~~~----v~~lr~l~~ 99 (169)
T 3ntk_A 47 DLKEGALCVAQFPE----DEVFYRAQIRKVLDD-GKCEVHFIDF---GN---NAV----TQQFRQLPE 99 (169)
T ss_dssp CCCTTCEEEEEETT----TTEEEEEEEEEECST-TCEEEEETTT---TE---EEE----ESCEECCCH
T ss_pred CCCCCCEEEEEECC----CCcEEEEEEEEECCC-CEEEEEEEec---CC---eEE----hhhhhccCH
Confidence 46899999998753 578999999999764 4799998853 22 222 378999984
No 82
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=60.81 E-value=6 Score=38.73 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=32.8
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 245 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 245 (269)
...+|+.|+|.|. --+||||.|..... .+.|.|.|-|-.
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~---~~~~~V~fvDyG 449 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVES---PAKIHVFYIDYG 449 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEE---TTEEEEEETTTC
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcC---CCeEEEEEEeCC
Confidence 3679999999999 67899999999852 367999998863
No 83
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=60.57 E-value=11 Score=28.38 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
..|.+|.+|-|+-+.-. .|.|+|...- .....|.|.|+|=
T Consensus 18 ~~F~vGmkLEA~D~~~~-~~~a~i~~v~--~~~~~v~VHfdGW 57 (88)
T 2eqm_A 18 ITFEIGARLEALDYLQK-WYPSRIEKID--YEEGKMLVHFERW 57 (88)
T ss_dssp CCCCSSCEEEEECTTSC-EEEEEEEEEE--TTTTEEEEEESSS
T ss_pred CcCCCCCEEEEEcCCCC-eeEEEEEEEe--ccCCEEEEEECCC
Confidence 35999999999987643 4888877652 2335699999884
No 84
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=59.91 E-value=49 Score=27.77 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=59.1
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCC------------------CCeEEEecCCCCCCCCCcceeEEEeccC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRE------------------TKEFEVLDEEPGDDEEGGVQRKYKLHMS 188 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~------------------~~rYeV~D~dp~dd~e~~~~~~~~ls~~ 188 (269)
.-.+.|+.|-|+-.. .+.|+=|.|+++-.. .--|.|.=.| .+|. ....++.+
T Consensus 9 glYKinelVDarD~~----~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkydd---ype~---gvv~~~~~ 78 (161)
T 3db3_A 9 GLYKVNEYVDARDTN----MGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDD---YPEN---GVVQMNSR 78 (161)
T ss_dssp CSSCTTCEEEEECTT----TCCEEEEEEEEEEEC-----------------CCEEEEEEESS---CGGG---CEEEEEGG
T ss_pred ceEEecceeeeeccC----CCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEecc---CccC---CeEecchh
Confidence 446889999998653 579999999996432 2346665421 2222 25677777
Q ss_pred ceeecCCCCCCCCCCCCCCCeEEEeC----CCCCcc-cceEEecc
Q 024333 189 FIIPFPKRNDSSIPEFPPGRHVLAVY----PGTTAL-YKATVVST 228 (269)
Q Consensus 189 ~IIPLP~~~~~~~~~f~kg~~VLAlY----P~TT~F-Y~A~V~~~ 228 (269)
+|-|=-... -.+-++.+|+.||+=| |....| |-|+|-.-
T Consensus 79 ~iRpRARt~-l~w~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~ 122 (161)
T 3db3_A 79 DVRARARTI-IKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRK 122 (161)
T ss_dssp GEECCCCCB-CCGGGCCTTCEEEEEECSSSTTSCCEEEEEEEEEE
T ss_pred ccccceEEe-ccHHHCCcCcEEEEecCCCCccccceeEEEEEeee
Confidence 777643211 2234699999999998 434444 78887764
No 85
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=58.40 E-value=30 Score=29.62 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=41.9
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
...+|+.++|+.. ++.|.=|.|+++..+ +.+.|.=+|= | ..-.++.++|.+||.
T Consensus 65 ~~~~G~~c~a~~~-----d~~wyRa~V~~~~~~-~~~~V~~vDy---G-----n~~~v~~~~lr~l~~ 118 (246)
T 2hqx_A 65 APRRGEFCIAKFV-----DGEWYRARVEKVESP-AKIHVFYIDY---G-----NREVLPSTRLGTLSP 118 (246)
T ss_dssp CCCTTCEEEEECT-----TSCEEEEEEEEEEET-TEEEEEETTT---C-----CEEEECGGGEECCCG
T ss_pred CCCCCCEEEEEcC-----CCCEEEEEEEEEcCC-CeEEEEEEeC---C-----CeEEEeHHHhhcCCH
Confidence 3578999999875 368999999998743 5899988742 2 245788999999985
No 86
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=57.39 E-value=40 Score=26.90 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=63.1
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeC-CC---CeEEEecCCCCCCCCCcceeEEEeccCceeecCCCCC-----
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDR-ET---KEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRND----- 198 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~-~~---~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~~~~----- 198 (269)
.+++||.|-+.-. ++......|+.|.. +. ..|-.+-.+ ++ +..+++..+.|..+....
T Consensus 20 eL~~GD~Vla~d~-----~G~~~~s~V~~~~~r~~~~~~~f~~I~t~-----~g---~~L~lTp~H~i~v~~~~~~~~~~ 86 (145)
T 1at0_A 20 ELSIGDRVLSMTA-----NGQAVYSEVILFMDRNLEQMQNFVQLHTD-----GG---AVLTVTPAHLVSVWQPESQKLTF 86 (145)
T ss_dssp GCCTTCEEEEECT-----TSCEEEEEEEEEEEEEEEEEEEEEEEEET-----TS---CEEEECTTCEEEEEETTTTEEEE
T ss_pred HcCCCCEEEEECC-----CCCEEEEEEEEEEeeCCCcceeEEEEEEC-----CC---CEEEEeCCCEEEEecCCCCcEEE
Confidence 3679999998753 35687788877642 11 122222221 21 578999999999986421
Q ss_pred CCCCCCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeE
Q 024333 199 SSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYL 238 (269)
Q Consensus 199 ~~~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~ 238 (269)
....++.+|+.|+....++.++.++.|.+--.....+.|.
T Consensus 87 v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~~~G~ya 126 (145)
T 1at0_A 87 VFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVA 126 (145)
T ss_dssp EEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEE
T ss_pred EEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEEEEeeeEc
Confidence 1223599999999887656779999998864222234454
No 87
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=56.66 E-value=22 Score=28.30 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=42.2
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCCC-------CCCCCeEEEecCCC-CCCCCCcccccCceEeeCCCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPRK-------RKTDDYLLEFDDDE-EDGALPQRTVPFHNVVPLPEG 266 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~-------~~~~~Y~L~FeDd~-~~G~~P~~~Vp~ryVv~~pe~ 266 (269)
...|..|+.|+|-.- .-.++||.|+.+|.. +....|.|.|=|+. +- -.|+..-+.++-++
T Consensus 20 ~~~~~~GdlVwaK~~-g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~-----aWv~~~~l~pf~~~ 87 (134)
T 2gfu_A 20 SSDFSPGDLVWAKME-GYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTR-----GWVSKRLLKPYTGS 87 (134)
T ss_dssp SCCCCTTSEEEECCT-TSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEE-----EEECGGGEEESCCT
T ss_pred CCCCCCCCEEEEeec-CCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCce-----EEECHHHcccCcch
Confidence 347999999999876 457999999998632 12346999997763 21 14666777766554
No 88
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=55.10 E-value=17 Score=27.31 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=34.1
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCC---CCCCCeEEEecCCCCCCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRK---RKTDDYLLEFDDDEEDGA 249 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~---~~~~~Y~L~FeDd~~~G~ 249 (269)
.|..|+.|+|-. .---+.||.|...+.. ...+.|.|.|=++.+-+.
T Consensus 5 ~f~~GdlVwaK~-~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~aw 53 (94)
T 3qby_A 5 AFKPGDLVFAKM-KGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAF 53 (94)
T ss_dssp CCCTTCEEEECC-TTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCEEE
T ss_pred cCccCCEEEEec-CCCCCCCEEEeecccccccCCCCEEEEEEEcCCCcce
Confidence 599999999987 3455789999987631 124679999988754433
No 89
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=54.56 E-value=12 Score=28.71 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccC---C-----CCCCCCeEEEecCCCCCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTP---R-----KRKTDDYLLEFDDDEEDG 248 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p---~-----~~~~~~Y~L~FeDd~~~G 248 (269)
..|..|+.|.|-... -.++||.|+.+. . +.....|.|.|=|+.+-+
T Consensus 7 ~~~~~GdlVwaK~~g-~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~a 60 (110)
T 2daq_A 7 GKLHYKQIVWVKLGN-YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYY 60 (110)
T ss_dssp CSCCSSEEEEEECSS-SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEE
T ss_pred CCCCCCCEEEEEeCC-CCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCCEE
Confidence 358899999999876 679999999872 1 112356999997765433
No 90
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.75 E-value=19 Score=27.28 Aligned_cols=39 Identities=5% Similarity=0.014 Sum_probs=33.1
Q ss_pred CCCCCCeEEEeCCCCCcccceEEeccCCCCCCCCeEEEecCC
Q 024333 203 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 203 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
....|..|-|.|+++-..|||.|...-++ ....|.|=|-
T Consensus 21 ~~k~g~~vaak~~d~n~WyRakV~~v~~~---~~veVl~~Dy 59 (85)
T 2eqk_A 21 KWENDMHCAVKIQDKNQWRRGQIIRMVTD---TLVEVLLYDV 59 (85)
T ss_dssp CCCSSCEEEEECSSSCCEEEEEEEEECSS---SEEEEECTTT
T ss_pred CccCCCEEEEEeCCCCeEEEEEEEEecCC---CeEEEEEEcc
Confidence 47899999999999999999999998543 3389999775
No 91
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=50.89 E-value=16 Score=27.98 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCC----------CCCCCCeEEEecCCCCCCCCCcccccCceEeeC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPR----------KRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPL 263 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~----------~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~ 263 (269)
...|..|+.|+|-. ..-.+++|.|+.+.. .+..+.|.|.|=|+.+-+ .|+..-+.++
T Consensus 4 ~~~~~~GdlVwaK~-~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~a-----Wv~~~~l~p~ 70 (109)
T 1h3z_A 4 RVNYKPGMRVLTKM-SGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYL-----WTGSDSLTPL 70 (109)
T ss_dssp CCCCCTTCEEEEEE-TTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCE-----EEEGGGEEEC
T ss_pred cccCCCCCEEEEEe-CCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCCCEE-----EECHHHeeeC
Confidence 34799999999987 445699999995410 112467999997775332 3455555444
No 92
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=50.25 E-value=37 Score=28.89 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=42.7
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCC-CCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRE-TKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~-~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
..+.+|+.|-|.-+. ...+.-|.|++--.. .+.|.|.=. +++++++. .-...++++.||++|.
T Consensus 115 ~~f~~G~~VLAlYP~----TT~FY~A~V~~~p~~~~~~y~L~FE-dde~~dG~-sp~~~V~~RyVv~~ke 178 (180)
T 3mea_A 115 ALFQKEQLVLALYPQ----TTCFYRALIHAPPQRPQDDYSVLFE-DTSYADGY-SPPLNVAQRYVVACKE 178 (180)
T ss_dssp GSCCTTCEEEEECTT----SSEEEEEEEEECCSSTTCCEEEEEB-CTTSTTSB-CCCEEECGGGEEEC--
T ss_pred ccCCCCCEEEEeCCC----CceeeEEEEecCCCCCCCcEEEEEc-CCCccCCC-CCCcEecceEEEccCC
Confidence 458899999998874 467889999997443 367888633 33233321 1245899999999985
No 93
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=48.15 E-value=22 Score=26.63 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=37.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhcCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024333 18 LDRLRKEQEDVLLEINKMHKKLHNTPEVIEKPGDNSLTKLKSLYIQAKELSENEVHVSNLLVGQLDALLP 87 (269)
Q Consensus 18 l~~lr~~~e~~l~~I~k~h~k~~~~~e~~~k~s~~~~~kL~~lY~~a~~~ae~E~~~~~~~l~~i~~l~~ 87 (269)
+..+-.+.+.+-.+.|-+.+|..++|+.+++ +-+|..=|+.. .|..+-..++.+|+.|+.
T Consensus 24 ikkiiaefdvvke~v~~l~ekakt~pqaae~-----ln~liegyt~g-----eerklydsalskieklie 83 (95)
T 1xou_B 24 IKKIIAEFDVVKESVNELSEKAKTDPQAAEK-----LNKLIEGYTYG-----EERKLYDSALSKIEKLIE 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHHHS-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH-----HHHHHHhhcch-----hHHHHHHHHHHHHHHHHH
Confidence 3333445566666777778888887775443 22344445542 355666777888888883
No 94
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=44.42 E-value=56 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.8
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTP 229 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p 229 (269)
...|..|+.|.|-- .+--+|||.|+.+.
T Consensus 34 ~~~~~pgdlVWAK~-~GyPwwPa~Iidp~ 61 (158)
T 3pfs_A 34 RGDLEPLELVWAKC-RGYPSYPALIIDPK 61 (158)
T ss_dssp CSCCCTTCEEEEEC-TTSCEEEEEEECTT
T ss_pred CCCCCCCCEEEEec-CCCCCCCEEEcCCC
Confidence 35799999999998 67779999999853
No 95
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=42.16 E-value=47 Score=26.88 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=23.8
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTP 229 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p 229 (269)
.+.|..|+.|.|-- .+-=+|+|.|+.|.
T Consensus 3 ~~~~~~~dlVWAK~-~gyP~wPa~Iidp~ 30 (130)
T 3l42_A 3 DSPLDALDLVWAKC-RGYPSYPALIIDPK 30 (130)
T ss_dssp CSSSCTTCEEEECC-TTSCCEEEEEECTT
T ss_pred cccCCCCCEEEEec-ccCCCCCEEEcCCC
Confidence 36799999999987 67779999999953
No 96
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=40.18 E-value=48 Score=31.29 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=43.3
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
..+.+|+.|-|.-+. ...+.-|+|++. +.+++|.|.=.|++ +. .....++++.|||+|.
T Consensus 456 ~~~~~~~~v~a~~p~----tt~fy~a~v~~~-~~~~~~~~~f~~~~--~~---~~~~~~~~~~v~~~~~ 514 (522)
T 3mp6_A 456 KNYPPGTKVLARYPE----TTTFYPAIVIGT-KRDGTCRLRFDGEE--EV---DKETEVTRRLVLPSPT 514 (522)
T ss_dssp CCCCTTCEEEEECTT----CSEEEEEEEEEE-CTTSCEEEEETTC---------CCEEECGGGEEECHH
T ss_pred cCCCCCCEEEEECCC----CcceEeEEEecC-CCCCeEEEEecCCC--CC---CccccccceeEEecCc
Confidence 458899999998773 467889999996 44578999876532 12 2356799999999995
No 97
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=39.96 E-value=78 Score=22.17 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=28.4
Q ss_pred cccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEe
Q 024333 125 DTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVL 167 (269)
Q Consensus 125 ~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~ 167 (269)
+...+++|++|-|.-.. ..|..|+|+.++...++|-|.
T Consensus 9 ~~~~F~vGmkLEa~d~~-----~p~~~AtV~~v~~~~~~~~Vh 46 (69)
T 3sd4_A 9 RGISFEVGAQLEARDRL-----KNWYPAHIEDIDYEEGKVLIH 46 (69)
T ss_dssp TTCCCSTTCEEEEECTT-----SCEEEEEEEEEETTTTEEEEE
T ss_pred CCCCcCCCCEEEEEECC-----CCccccEEEEEeccCCEEEEE
Confidence 45679999999987553 458899999986555666553
No 98
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=39.95 E-value=67 Score=31.24 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=44.3
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
....+|+.++|+.. ++.|.=|.|+++.. .+.|+|.=+|= | ..-.++.++|-|||.
T Consensus 410 ~~~~~G~~c~a~~~-----d~~wyRa~I~~v~~-~~~~~V~fvDy---G-----n~e~v~~~~Lr~l~~ 464 (570)
T 3bdl_A 410 YAPRRGEFCIAKFV-----DGEWYRARVEKVES-PAKIHVFYIDY---G-----NREVLPSTRLGTLSP 464 (570)
T ss_dssp CCCCTTCEEEEECT-----TSCEEEEEEEEEEE-TTEEEEEETTT---C-----CEEEECGGGEECCCG
T ss_pred cCCCcCCEEEEEEC-----CCCEEEEEEEEEcC-CCeEEEEEEeC---C-----CeEEEEHHHCccCCH
Confidence 44678999999875 36899999999976 47899998853 2 245799999999995
No 99
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=38.64 E-value=27 Score=28.56 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCC----CCCCeEEEecCCCCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKR----KTDDYLLEFDDDEED 247 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~----~~~~Y~L~FeDd~~~ 247 (269)
..|..|+.|.|-- ..-.++||.|+.++... ..+.|.|.|=|+.+-
T Consensus 10 ~~~~~GDlVWaKv-kGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~ 58 (147)
T 1khc_A 10 KEFGIGDLVWGKI-KGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKF 58 (147)
T ss_dssp SSCCTTCEEEEEE-TTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCE
T ss_pred ccCcCCCEEEEec-CCcCCCCEEeccchhhhcccCCCCeEEEEEecCCCE
Confidence 4699999999986 45578999999876321 236799999887543
No 100
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=36.68 E-value=29 Score=29.14 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=38.4
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCCCC----------------CCCCeEEEecCCCCCCCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPRKR----------------KTDDYLLEFDDDEEDGAL 250 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~----------------~~~~Y~L~FeDd~~~G~~ 250 (269)
.-|..|..|=|.=+..-+.+-|.|+..-+.. ..-.|.|+|||..++|..
T Consensus 9 glYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv 73 (161)
T 3db3_A 9 GLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVV 73 (161)
T ss_dssp CSSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEE
T ss_pred ceEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeE
Confidence 4599999999999999999999999832211 123499999999777763
No 101
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=35.60 E-value=1.4e+02 Score=23.73 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024333 14 KSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKPGDNSLTKLKSLYIQAKELSENEVHVSNLLVGQL 82 (269)
Q Consensus 14 ~l~el~~lr~~~e~~l~~I~k~h~k~~~~~e~~~k~s~~~~~kL~~lY~~a~~~ae~E~~~~~~~l~~i 82 (269)
+.-||++||+++|.+...=-.+.-.|+++-| + -.++++.=|..-..+.+.|-..-.+-++.+
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~kklqLkse~e---~----E~ae~k~KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEKKSILKAELE---R----KMAEVQAEFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999998654332222223333211 1 134566666555555555544444444443
No 102
>1rso_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity; NMR {Rattus norvegicus} SCOP: a.194.1.1
Probab=33.85 E-value=50 Score=22.52 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=25.0
Q ss_pred CCcccHHHHHHHHHHHHHHHH----h--------hHHHHHHHHHHHHhhcC
Q 024333 3 SSAPDIADILDKSRELDRLRK----E--------QEDVLLEINKMHKKLHN 41 (269)
Q Consensus 3 ~~~~~~~~i~~~l~el~~lr~----~--------~e~~l~~I~k~h~k~~~ 41 (269)
|+.+.+.++++.|.++..+=. . ++..+..+-|+|+|+++
T Consensus 4 ~~~~~v~~vL~sL~~i~~l~~~~~~d~~fL~~ll~~~~L~~Llkvhdki~~ 54 (56)
T 1rso_B 4 AAERAVSQVLDSLEEIHALTDSSEKDLDFLHSVFQDQHLHTLLDLYDKINT 54 (56)
T ss_dssp TTTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHhcccccccCHHHHHHHHcCHHHHHHHHHHHHHHc
Confidence 444568888999988877711 1 23345566667777764
No 103
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.66 E-value=70 Score=21.77 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcC
Q 024333 5 APDIADILDKSRELDRLRKEQEDVLLEINKMHKKLHN 41 (269)
Q Consensus 5 ~~~~~~i~~~l~el~~lr~~~e~~l~~I~k~h~k~~~ 41 (269)
+|+...+-.+-.|+..||.+.+.....+..+..++..
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667778888899999999999999999888877753
No 104
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=32.81 E-value=1.4e+02 Score=21.63 Aligned_cols=51 Identities=4% Similarity=0.099 Sum_probs=36.5
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeec
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPF 193 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPL 193 (269)
..+..|+-|-++-+ ++.+.|+.||.. ..++|-|.=.| + ..+.+.++.|--|
T Consensus 14 ~~~~~geDVL~rw~-----DG~fYLGtIVd~--~~~~ClV~FeD-----~----S~~Wv~~kdi~kl 64 (69)
T 2xk0_A 14 VTYALQEDVFIKCN-----DGRFYLGTIIDQ--TSDQYLIRFDD-----Q----SEQWCEPDKLRKL 64 (69)
T ss_dssp CCCCTTCEEEEECT-----TSCEEEEEEEEE--CSSCEEEEETT-----C----CEEEECTTTEECS
T ss_pred cccccCCeEEEEec-----CCCEEEEEEEec--CCceEEEEecC-----C----cceeeeHHHHHhh
Confidence 67899999999965 589999999664 46778887532 2 2456666666544
No 105
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=32.50 E-value=30 Score=28.20 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTP 229 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p 229 (269)
+.|..|.+|||.+ --.+|.|.|...-
T Consensus 8 ~~f~~gekvl~~h--g~llYeAKVl~v~ 33 (136)
T 2k3y_A 8 QEFALGGRVLAFH--GPLMYEAKILKIW 33 (136)
T ss_dssp GSCCTTSEEEEEC--SSCEEEEEEEEEE
T ss_pred cccCCCCEEEEEE--CCeeEEEEEEEEE
Confidence 4699999999988 3559999999863
No 106
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=31.14 E-value=1.1e+02 Score=26.70 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024333 52 NSLTKLKSLYIQAKELSENEVHVSNLLVGQLDA 84 (269)
Q Consensus 52 ~~~~kL~~lY~~a~~~ae~E~~~~~~~l~~i~~ 84 (269)
....+||.||..| ...+.|.++|+.++.+|..
T Consensus 204 ~~~~~lr~l~~Ra-~~~~~E~~~LrGi~~~~~~ 235 (244)
T 3ilk_A 204 GVMRKLKRLYYRA-KLEKNELNILNGMLSAVEK 235 (244)
T ss_dssp HHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 5677899999887 4789999999999988875
No 107
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=30.59 E-value=1.5e+02 Score=21.29 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=45.3
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 195 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~ 195 (269)
.....||.|-||=+ ++..+.-|+|++++..+.-|.|.==| + ..-+|..+.|-|+..
T Consensus 8 ~~~~vgd~VmaRW~----Gd~~yYparI~Si~s~~~~Y~V~fKd------g---T~e~L~~kDIkp~~s 63 (66)
T 2l8d_A 8 RKYADGEVVMGRWP----GSVLYYEVQVTSYDDASHLYTVKYKD------G---TELALKESDIRLQSS 63 (66)
T ss_dssp SSSCSSCEEEEECT----TSSCEEEEEEEEEETTTTEEEEEETT------S---CEEEEEGGGEECSSS
T ss_pred eEeecCCEEEEEcC----CCccceEEEEEEeccCCceEEEEecC------C---CEEeechhccccchh
Confidence 45789999999984 24689999999999889999997642 1 356899999999853
No 108
>2w4y_A Caulobacter 5 virus-like particle; structure, assembly, calcium ION, RNA; HET: AMP; 2.90A {Unclassified levivirus} PDB: 2w4z_A*
Probab=30.51 E-value=23 Score=27.39 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=33.6
Q ss_pred CCCCCcccceEEeccCCCCC--C---CCeEEEecCC-CCCCCCCcccccCceEee
Q 024333 214 YPGTTALYKATVVSTPRKRK--T---DDYLLEFDDD-EEDGALPQRTVPFHNVVP 262 (269)
Q Consensus 214 YP~TT~FY~A~V~~~p~~~~--~---~~Y~L~FeDd-~~~G~~P~~~Vp~ryVv~ 262 (269)
.|+|++-|+|.|.-+...-+ + ..-.|.|-.. ++.|.+|. .|-|-|||.
T Consensus 34 lpetsssfrakvrhtkesvkpnqvqyerhnveftetvyasgstpe-fvrqayvvi 87 (122)
T 2w4y_A 34 LPETSSSFRAKVRHTKESVKPNQVQYERHNVEFTETVYASGSTPE-FVRQAYVVI 87 (122)
T ss_dssp EECSSEEEEEEEEEEECCCCTTSCCEEEEEEEEEEEECCBTTBCC-EEEEEEEEE
T ss_pred ccccchHHHHHhhhcccccCccceeeeeccceEEEEEEecCCChH-HhheeeEEE
Confidence 47899999999976532111 1 2347899777 89999875 577778774
No 109
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=30.25 E-value=99 Score=26.32 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCc-ccccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024333 10 DILDKSRELDRLRKEQEDVLLEINKMHKKLHNTP-EVIEKP-GDNSLTKLKSLYIQAKELSENEVHVSNLLV 79 (269)
Q Consensus 10 ~i~~~l~el~~lr~~~e~~l~~I~k~h~k~~~~~-e~~~k~-s~~~~~kL~~lY~~a~~~ae~E~~~~~~~l 79 (269)
.+.++...|+.+|...+..+..++.+...-..-. +.-+.+ +++.-.-|......+.+.+++||..|..-+
T Consensus 80 ~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F 151 (192)
T 2p22_C 80 QLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTT 151 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555557777777777666554432210 010111 233334566677778888888888765443
No 110
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=30.11 E-value=25 Score=28.11 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=16.9
Q ss_pred eEEEeCCCC--CcccceEEeccC
Q 024333 209 HVLAVYPGT--TALYKATVVSTP 229 (269)
Q Consensus 209 ~VLAlYP~T--T~FY~A~V~~~p 229 (269)
+|.++++++ +++|||.|++|-
T Consensus 15 kVV~V~~~~kk~~WfPALVVsPs 37 (117)
T 2yrv_A 15 KVVSVVSATERTEWYPALVISPS 37 (117)
T ss_dssp SEEEEECSSCSSCEEEEEEECCS
T ss_pred cEEEEecCCCCCceeeeEEECCC
Confidence 366788875 699999999984
No 111
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=26.46 E-value=27 Score=26.84 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCCCCCCCeEEEeCCCCCcccceEEeccCC---C-----CCCCCeEEEecCCC
Q 024333 201 IPEFPPGRHVLAVYPGTTALYKATVVSTPR---K-----RKTDDYLLEFDDDE 245 (269)
Q Consensus 201 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~---~-----~~~~~Y~L~FeDd~ 245 (269)
.-.|..|+.|+|-.- .--.+||.|+.++. . ...+.|.|.|=|+.
T Consensus 3 ~~~~~~GdlVwaK~~-gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~ 54 (108)
T 2l89_A 3 DDRLNFGDRILVKAP-GYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDF 54 (108)
T ss_dssp SCCCCTTEEEEEECS-SSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTT
T ss_pred CCcccCCCEEEEEeC-CcCCCceEecCcccCcHHHhhccCCCCeEEEEECCCC
Confidence 457999999999854 44579999987531 1 11356999997764
No 112
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=24.71 E-value=79 Score=26.07 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=40.2
Q ss_pred CCCCCCCeEEEeCCCCCcccceEEeccCC----CCCCCCeEEEecCCCCCCCCCcccccCceEeeCC
Q 024333 202 PEFPPGRHVLAVYPGTTALYKATVVSTPR----KRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLP 264 (269)
Q Consensus 202 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~----~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p 264 (269)
..|..|+.|.|-- .--.+.||.|+.++. ....+.|.|.|=|+.+.+ .|+..-+.++-
T Consensus 15 ~~f~~GDLVWaKv-kG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~a-----wv~~~~L~pf~ 75 (154)
T 3llr_A 15 RGFGIGELVWGKL-RGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFS-----VVCVEKLMPLS 75 (154)
T ss_dssp CCCCTTCEEEECC-TTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCEE-----EEEGGGEEEGG
T ss_pred CCCccCCEEEEec-CCCCCCCEEEecccccccccCCCCEEEEEEeCCCCEE-----EEcHHHCcchh
Confidence 4699999999998 447899999999752 122467999998875332 45555555543
No 113
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=24.57 E-value=2.9e+02 Score=23.08 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=45.6
Q ss_pred eEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeccCceeecCC--CCC-CCCCCCCCCCeEEEeCCC---CCcccc
Q 024333 149 WFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK--RND-SSIPEFPPGRHVLAVYPG---TTALYK 222 (269)
Q Consensus 149 WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~ls~~~IIPLP~--~~~-~~~~~f~kg~~VLAlYP~---TT~FY~ 222 (269)
...+.|..++.+..+..|+-- + . ...|+|.=. ... ..+..-.+|+.||-+||. ...|.-
T Consensus 18 ir~G~V~~vd~~~~rvrV~~~----~-----~------~t~wl~~~~~~ag~~~~~~~P~vGeqV~v~f~~Gd~~~gvVl 82 (211)
T 3qr8_A 18 IRTGIIVETDLNAGRCRVQTG----G-----M------CTDWLQWLTHRAGRSRTWWAPSVGEQVLILAVGGELDTAFVL 82 (211)
T ss_dssp EEEEEEEEEETTTTEEEEEET----T-----E------ECCCEEECCSCBSSSBCCCCCCTTCEEEEEECCTTTCCEEEE
T ss_pred cEEEEEEEEECCCCEEEEEeC----C-----c------cceeEEeEcccccCCceEeCCCCCCEEEEEeCCCccCccEEE
Confidence 346888888888888888641 1 1 123444322 111 334447899999999996 333333
Q ss_pred eEEecc---CCCCCCCCeEEEecCC
Q 024333 223 ATVVST---PRKRKTDDYLLEFDDD 244 (269)
Q Consensus 223 A~V~~~---p~~~~~~~Y~L~FeDd 244 (269)
+-+... |+....+.|.++|.|-
T Consensus 83 g~~~s~~~~~P~~~~~~~~~~~~dG 107 (211)
T 3qr8_A 83 PGIYSGDNPSPSVSADALHIRFPDG 107 (211)
T ss_dssp EEECCSSSCCSCCCSSCEEEECTTS
T ss_pred eeecCcccCCCCCCCCeEEEEcCCC
Confidence 332221 1122335688888663
No 114
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=24.26 E-value=79 Score=24.09 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=27.4
Q ss_pred CCCeEEEeCCCCCcccceEEeccCCCC---CCCCeEEEecCC
Q 024333 206 PGRHVLAVYPGTTALYKATVVSTPRKR---KTDDYLLEFDDD 244 (269)
Q Consensus 206 kg~~VLAlYP~TT~FY~A~V~~~p~~~---~~~~Y~L~FeDd 244 (269)
.|++||...++ -.+|+|.|...-... ....|-|.|.|=
T Consensus 17 ~~e~vlc~~~d-g~~yeAeIl~ir~~~~~~~~~~YYVHY~g~ 57 (92)
T 2bud_A 17 PDKIYFIRRED-GTVHRGQVLQSRTTENAAAPDEYYVHYVGL 57 (92)
T ss_dssp TTSCEEEECTT-SCEEEEEEEEEECTTTCSSCCEEEEECSSS
T ss_pred CCCEEEEEeCC-CCEEEEEEEEEeeccCCCCCcEEEEEeCCc
Confidence 38999999963 469999999863221 123688998774
No 115
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=24.25 E-value=1.8e+02 Score=21.45 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=29.1
Q ss_pred ccccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCCCeEEEec
Q 024333 126 TCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLD 168 (269)
Q Consensus 126 ~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D 168 (269)
...+++|++|-|.-. .+.|..|.|+.++....+|-|.=
T Consensus 17 ~~~F~vGmkLEA~D~-----~~~~~~a~i~~v~~~~~~v~VHf 54 (88)
T 2eqm_A 17 GITFEIGARLEALDY-----LQKWYPSRIEKIDYEEGKMLVHF 54 (88)
T ss_dssp SCCCCSSCEEEEECT-----TSCEEEEEEEEEETTTTEEEEEE
T ss_pred cCcCCCCCEEEEEcC-----CCCeeEEEEEEEeccCCEEEEEE
Confidence 567899999988754 35799999988876667777743
No 116
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=23.18 E-value=82 Score=22.82 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=26.4
Q ss_pred cccCCCCeeEEeeccCCCCCCCeEEEEEEeEeCCC--CeEEEe
Q 024333 127 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRET--KEFEVL 167 (269)
Q Consensus 127 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~--~rYeV~ 167 (269)
..+.+|+.|-++-.. +..+.|..|+|+++.... ..|-|-
T Consensus 4 ~~~~vGekV~~~~~d--~k~~~~y~AkIl~i~~~~~~~~Y~VH 44 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGR--GKTQKIYEASIKSTEIDDGEVLYLVH 44 (76)
T ss_dssp CCSSTTCEEEEEEEE--TTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred cccCCCCEEEEEeCC--CCCCCEEEEEEEEEEccCCceEEEEE
Confidence 357899999998752 113589999999976432 235553
No 117
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.24 E-value=2.8e+02 Score=26.25 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcC-CcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024333 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHN-TPEVIEKPGDNSLTKLKSLYIQAKELSENEVHVSNLL 78 (269)
Q Consensus 8 ~~~i~~~l~el~~lr~~~e~~l~~I~k~h~k~~~-~~e~~~k~s~~~~~kL~~lY~~a~~~ae~E~~~~~~~ 78 (269)
|..|.+.|.++.+.-+.....+.+|..+-++-++ ..++ +..=-.+...|+.-|.-.|........-|+.+
T Consensus 69 Ie~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dn-dn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 69 INKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNN-DNTFKQINEDLRSRIEILRRKVIEQVQRINLL 139 (390)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6778888888888877777777777544444444 2112 22223344456665555555444433333333
No 118
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=21.00 E-value=1.1e+02 Score=24.45 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=25.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCeEEEEEEeEeC----CCCeEEEe
Q 024333 128 ASLKGEQVAARVTAENADKDEWFVVKVMHFDR----ETKEFEVL 167 (269)
Q Consensus 128 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~----~~~rYeV~ 167 (269)
.+..|+.|.++-. ++.|-.|+|+++.. ....|-|-
T Consensus 12 ~~~vGe~v~~~~~-----d~~~y~AkIl~i~~~~~~~~~~YyVH 50 (133)
T 1wgs_A 12 TVEIGETYLCRRP-----DSTWHSAEVIQSRVNDQEGREEFYVH 50 (133)
T ss_dssp CCCTTSEEEEEET-----TTEEEEEEEEEEEEETTTTEEEEEEE
T ss_pred ccCCCCEEEEEeC-----CCCEEEEEEEEEEeccCCCceEEEEe
Confidence 4789999999864 36899999999752 23456664
No 119
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.85 E-value=2.2e+02 Score=21.07 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=34.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024333 47 EKPGDNSLTKLKSLYIQAKELSENEVHVSNLLVGQLDALL 86 (269)
Q Consensus 47 ~k~s~~~~~kL~~lY~~a~~~ae~E~~~~~~~l~~i~~l~ 86 (269)
+.+|..||..|-.=...|..+|-.|..-|+..|+.+++=|
T Consensus 11 e~Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 11 ENPSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEI 50 (79)
T ss_dssp CCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999988777544
No 120
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=20.79 E-value=1.4e+02 Score=23.15 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCCCCCeEEEeCCCC-CcccceEEeccCCCCCCCCeEEEecCC
Q 024333 203 EFPPGRHVLAVYPGT-TALYKATVVSTPRKRKTDDYLLEFDDD 244 (269)
Q Consensus 203 ~f~kg~~VLAlYP~T-T~FY~A~V~~~p~~~~~~~Y~L~FeDd 244 (269)
.|.+|.++=|+=|.- +.++.|+|...- .....|.||+-
T Consensus 13 ~F~~GMKLEAvD~~~p~~icvATV~~v~----g~rl~v~fDGw 51 (107)
T 1wjq_A 13 GFQKKMKLEVVDKRNPMFIRVATVADTD----DHRVKVHFDGW 51 (107)
T ss_dssp SCCSSCEEEEECTTCTTCEEEEEEEEEC----SSCEEEECSSS
T ss_pred cCCCCCEEEEEcCCCCCcEEeEEEEEec----CCEEEEEeCCC
Confidence 599999999999984 568999999983 35689999875
No 121
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.49 E-value=74 Score=31.54 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 024333 8 IADILDKSRELDRLRKEQEDVLLEINKMH 36 (269)
Q Consensus 8 ~~~i~~~l~el~~lr~~~e~~l~~I~k~h 36 (269)
|..|.+.|.+|.+.++..+...++|..+.
T Consensus 66 INELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 66 INKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 66777777788777888888877775443
Done!