Query 024334
Match_columns 269
No_of_seqs 236 out of 1392
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1571 Predicted E3 ubiquitin 100.0 8.7E-42 1.9E-46 310.9 7.2 227 42-269 122-355 (355)
2 PF12483 GIDE: E3 Ubiquitin li 99.9 1E-27 2.2E-32 201.1 10.5 129 31-159 19-156 (160)
3 KOG4172 Predicted E3 ubiquitin 99.4 2.4E-14 5.1E-19 97.1 -2.5 50 220-269 8-62 (62)
4 KOG4265 Predicted E3 ubiquitin 99.3 1.3E-12 2.7E-17 120.1 2.9 53 217-269 288-344 (349)
5 PF13920 zf-C3HC4_3: Zinc fing 99.3 1.7E-12 3.7E-17 88.1 1.7 45 219-263 2-50 (50)
6 KOG4275 Predicted E3 ubiquitin 99.2 1.6E-12 3.5E-17 116.1 0.8 51 219-269 300-350 (350)
7 KOG0317 Predicted E3 ubiquitin 99.0 2.5E-10 5.5E-15 102.3 3.8 45 218-263 238-286 (293)
8 KOG0823 Predicted E3 ubiquitin 98.9 1.5E-09 3.3E-14 94.7 4.2 50 217-267 45-103 (230)
9 PLN03208 E3 ubiquitin-protein 98.8 4.1E-09 9E-14 90.3 3.5 49 218-267 17-87 (193)
10 KOG1100 Predicted E3 ubiquitin 98.5 2E-07 4.3E-12 81.5 7.1 47 221-267 160-206 (207)
11 KOG4628 Predicted E3 ubiquitin 98.5 4.2E-07 9.1E-12 84.5 8.4 42 220-262 230-279 (348)
12 PF13923 zf-C3HC4_2: Zinc fing 98.4 6.4E-08 1.4E-12 62.1 1.2 34 222-256 1-39 (39)
13 PHA02929 N1R/p28-like protein; 98.4 1.1E-07 2.3E-12 84.7 2.9 47 219-266 174-232 (238)
14 PF13639 zf-RING_2: Ring finge 98.4 1.2E-07 2.7E-12 62.3 1.0 36 221-257 2-44 (44)
15 KOG0320 Predicted E3 ubiquitin 98.4 1.7E-07 3.7E-12 78.9 2.0 47 220-267 132-186 (187)
16 PF14634 zf-RING_5: zinc-RING 98.2 5.3E-07 1.2E-11 59.4 2.0 36 222-258 2-44 (44)
17 KOG2164 Predicted E3 ubiquitin 98.2 4E-07 8.7E-12 87.5 1.7 48 219-267 186-244 (513)
18 PHA02926 zinc finger-like prot 98.2 5.1E-07 1.1E-11 78.7 0.7 46 219-265 170-234 (242)
19 PF15227 zf-C3HC4_4: zinc fing 98.1 1.3E-06 2.7E-11 57.2 1.7 34 222-256 1-42 (42)
20 KOG0978 E3 ubiquitin ligase in 98.0 8E-07 1.7E-11 89.0 -0.6 42 220-262 644-690 (698)
21 COG5574 PEX10 RING-finger-cont 98.0 1.7E-06 3.7E-11 77.1 1.3 43 219-262 215-263 (271)
22 PF00097 zf-C3HC4: Zinc finger 98.0 2.1E-06 4.6E-11 55.3 1.2 34 222-256 1-41 (41)
23 cd00162 RING RING-finger (Real 98.0 3.9E-06 8.3E-11 54.0 2.2 39 221-260 1-45 (45)
24 smart00184 RING Ring finger. E 98.0 3.9E-06 8.4E-11 52.1 1.8 34 222-256 1-39 (39)
25 KOG1785 Tyrosine kinase negati 98.0 2.3E-06 4.9E-11 80.1 0.8 46 219-265 369-420 (563)
26 smart00504 Ubox Modified RING 97.8 1E-05 2.2E-10 56.8 2.3 41 221-262 3-47 (63)
27 TIGR00599 rad18 DNA repair pro 97.8 7.5E-06 1.6E-10 77.9 1.8 45 217-262 24-72 (397)
28 COG5243 HRD1 HRD ubiquitin lig 97.8 4.8E-05 1E-09 70.8 6.8 42 218-260 286-344 (491)
29 PF13445 zf-RING_UBOX: RING-ty 97.6 2.3E-05 4.9E-10 51.5 1.0 27 222-250 1-31 (43)
30 COG5540 RING-finger-containing 97.5 3.9E-05 8.5E-10 69.7 2.2 41 220-261 324-372 (374)
31 KOG4692 Predicted E3 ubiquitin 97.5 4.7E-05 1E-09 70.5 2.1 44 218-262 421-468 (489)
32 COG5432 RAD18 RING-finger-cont 97.4 5.7E-05 1.2E-09 68.3 1.5 43 217-260 23-69 (391)
33 PF12678 zf-rbx1: RING-H2 zinc 97.4 7.7E-05 1.7E-09 54.5 1.9 36 221-257 21-73 (73)
34 KOG0287 Postreplication repair 97.4 5.2E-05 1.1E-09 69.8 0.8 43 219-262 23-69 (442)
35 PF14447 Prok-RING_4: Prokaryo 97.3 0.00011 2.3E-09 50.5 1.4 43 219-262 7-51 (55)
36 COG5236 Uncharacterized conser 97.3 0.00029 6.3E-09 65.2 4.3 48 217-265 59-112 (493)
37 KOG2177 Predicted E3 ubiquitin 97.2 9E-05 1.9E-09 65.6 0.6 40 218-258 12-55 (386)
38 KOG0802 E3 ubiquitin ligase [P 97.2 0.00052 1.1E-08 68.2 5.8 42 218-260 290-340 (543)
39 PF04564 U-box: U-box domain; 96.7 0.00092 2E-08 48.7 2.0 43 219-262 4-51 (73)
40 PF14835 zf-RING_6: zf-RING of 96.6 0.00086 1.9E-08 47.6 1.3 40 220-260 8-50 (65)
41 COG5152 Uncharacterized conser 96.6 0.00075 1.6E-08 58.1 0.6 46 216-262 193-242 (259)
42 KOG0311 Predicted E3 ubiquitin 96.3 0.00045 9.7E-09 64.1 -2.6 44 219-263 43-92 (381)
43 KOG0804 Cytoplasmic Zn-finger 96.2 0.0031 6.6E-08 60.3 2.9 41 217-258 173-219 (493)
44 KOG4159 Predicted E3 ubiquitin 96.1 0.0027 5.8E-08 60.7 1.7 45 217-262 82-130 (398)
45 KOG0828 Predicted E3 ubiquitin 96.1 0.0017 3.7E-08 62.6 0.4 44 218-262 570-635 (636)
46 KOG1813 Predicted E3 ubiquitin 96.1 0.0026 5.6E-08 57.9 1.4 48 215-263 237-288 (313)
47 KOG1039 Predicted E3 ubiquitin 96.0 0.0025 5.4E-08 59.8 1.2 46 219-265 161-225 (344)
48 PF12861 zf-Apc11: Anaphase-pr 95.4 0.01 2.2E-07 44.6 2.0 29 232-261 47-82 (85)
49 KOG1734 Predicted RING-contain 95.1 0.14 3E-06 46.3 8.7 46 216-262 221-282 (328)
50 KOG2879 Predicted E3 ubiquitin 94.8 0.025 5.4E-07 51.1 3.2 46 217-263 237-289 (298)
51 KOG3002 Zn finger protein [Gen 94.5 0.018 4E-07 53.1 1.5 44 218-263 47-93 (299)
52 KOG0826 Predicted E3 ubiquitin 94.3 0.2 4.3E-06 46.5 7.8 52 215-267 296-354 (357)
53 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.048 1E-06 49.3 2.9 46 216-262 110-162 (260)
54 KOG0825 PHD Zn-finger protein 93.7 0.021 4.6E-07 58.1 0.3 45 220-265 124-175 (1134)
55 KOG1001 Helicase-like transcri 93.6 0.026 5.6E-07 57.6 0.9 41 220-262 455-501 (674)
56 KOG2932 E3 ubiquitin ligase in 93.4 0.024 5.2E-07 52.0 0.3 45 219-264 90-137 (389)
57 KOG1814 Predicted E3 ubiquitin 93.4 0.033 7.1E-07 53.0 1.0 40 219-259 184-238 (445)
58 KOG0297 TNF receptor-associate 92.9 0.06 1.3E-06 51.6 2.1 46 217-263 19-69 (391)
59 KOG1002 Nucleotide excision re 91.1 0.059 1.3E-06 52.8 -0.2 42 218-260 535-585 (791)
60 smart00744 RINGv The RING-vari 90.6 0.15 3.2E-06 34.3 1.4 36 221-257 1-49 (49)
61 KOG1428 Inhibitor of type V ad 89.9 0.12 2.6E-06 56.0 0.8 46 217-263 3484-3546(3738)
62 PF10367 Vps39_2: Vacuolar sor 89.9 0.8 1.7E-05 34.9 5.2 29 219-248 78-108 (109)
63 KOG2113 Predicted RNA binding 89.6 0.35 7.7E-06 44.7 3.5 49 218-266 342-392 (394)
64 KOG3039 Uncharacterized conser 88.2 0.32 7E-06 43.5 2.1 42 220-262 222-271 (303)
65 PF10272 Tmpp129: Putative tra 87.7 1 2.2E-05 42.7 5.3 41 219-260 271-350 (358)
66 PF04710 Pellino: Pellino; In 87.6 0.17 3.6E-06 48.1 0.0 43 219-262 328-402 (416)
67 PF05290 Baculo_IE-1: Baculovi 87.2 0.24 5.2E-06 40.2 0.7 44 221-265 82-136 (140)
68 COG5219 Uncharacterized conser 85.6 0.29 6.2E-06 51.3 0.5 41 221-262 1471-1524(1525)
69 COG5175 MOT2 Transcriptional r 85.1 0.34 7.4E-06 45.2 0.6 43 219-262 14-65 (480)
70 KOG2660 Locus-specific chromos 84.0 0.22 4.7E-06 46.2 -1.1 46 219-265 15-65 (331)
71 COG5220 TFB3 Cdk activating ki 83.7 0.27 5.9E-06 43.8 -0.6 39 219-258 10-61 (314)
72 PF14570 zf-RING_4: RING/Ubox 83.3 0.5 1.1E-05 31.7 0.7 38 222-260 1-47 (48)
73 KOG3842 Adaptor protein Pellin 82.8 0.69 1.5E-05 42.9 1.6 43 219-262 341-415 (429)
74 COG5222 Uncharacterized conser 81.3 0.61 1.3E-05 42.9 0.7 38 220-258 275-318 (427)
75 PF11789 zf-Nse: Zinc-finger o 79.4 1.2 2.6E-05 30.9 1.5 38 217-255 9-53 (57)
76 PF11793 FANCL_C: FANCL C-term 77.8 0.65 1.4E-05 33.5 -0.2 42 220-262 3-67 (70)
77 PF05883 Baculo_RING: Baculovi 74.9 0.98 2.1E-05 36.8 0.1 30 220-250 27-65 (134)
78 KOG3161 Predicted E3 ubiquitin 73.9 1.2 2.6E-05 44.9 0.4 39 219-259 11-55 (861)
79 PF03854 zf-P11: P-11 zinc fin 73.8 1.6 3.4E-05 29.2 0.8 42 221-264 4-49 (50)
80 KOG3799 Rab3 effector RIM1 and 73.1 5.3 0.00012 32.7 3.9 39 219-260 65-117 (169)
81 PF02318 FYVE_2: FYVE-type zin 71.3 6.5 0.00014 31.1 4.0 39 219-258 54-102 (118)
82 PHA03096 p28-like protein; Pro 70.7 1.6 3.5E-05 40.1 0.4 30 220-250 179-216 (284)
83 PLN02189 cellulose synthase 68.4 3.2 6.8E-05 44.4 2.1 44 219-262 34-88 (1040)
84 KOG4445 Uncharacterized conser 67.0 1.5 3.2E-05 40.5 -0.6 41 220-261 116-186 (368)
85 COG5194 APC11 Component of SCF 66.1 4.1 8.9E-05 30.3 1.7 40 221-261 33-81 (88)
86 PF06305 DUF1049: Protein of u 62.2 50 0.0011 22.9 7.3 22 169-190 41-62 (68)
87 KOG1493 Anaphase-promoting com 61.3 1.6 3.6E-05 32.1 -1.1 40 221-261 33-81 (84)
88 KOG4362 Transcriptional regula 61.1 2.4 5.2E-05 43.3 -0.4 41 221-262 23-70 (684)
89 PF10883 DUF2681: Protein of u 58.7 58 0.0013 24.6 6.8 26 158-183 12-37 (87)
90 PF00558 Vpu: Vpu protein; In 58.0 16 0.00036 27.2 3.7 18 168-185 26-43 (81)
91 KOG2113 Predicted RNA binding 57.6 4 8.7E-05 37.9 0.5 45 219-263 136-185 (394)
92 KOG3579 Predicted E3 ubiquitin 57.0 4.4 9.5E-05 37.2 0.6 31 219-250 268-302 (352)
93 KOG3842 Adaptor protein Pellin 56.9 7.4 0.00016 36.3 2.0 38 229-267 314-357 (429)
94 KOG1940 Zn-finger protein [Gen 55.7 2.3 5E-05 38.9 -1.4 46 221-268 160-213 (276)
95 PF08114 PMP1_2: ATPase proteo 54.6 34 0.00073 22.2 4.2 22 156-177 17-38 (43)
96 PHA02825 LAP/PHD finger-like p 52.3 12 0.00027 31.4 2.5 43 218-261 7-59 (162)
97 cd00350 rubredoxin_like Rubred 52.2 7.4 0.00016 23.6 0.9 27 236-265 6-32 (33)
98 PF04216 FdhE: Protein involve 50.6 9.7 0.00021 34.8 1.8 48 219-267 172-228 (290)
99 PF14880 COX14: Cytochrome oxi 50.6 81 0.0018 21.7 7.4 32 147-178 15-46 (59)
100 KOG2817 Predicted E3 ubiquitin 50.5 7.8 0.00017 37.0 1.2 41 219-260 334-384 (394)
101 KOG2930 SCF ubiquitin ligase, 50.3 7.5 0.00016 30.3 0.8 27 232-259 76-106 (114)
102 PF02891 zf-MIZ: MIZ/SP-RING z 50.2 10 0.00022 25.4 1.4 38 221-259 4-50 (50)
103 KOG1941 Acetylcholine receptor 50.1 3.8 8.2E-05 39.2 -1.0 43 218-261 364-416 (518)
104 PRK00523 hypothetical protein; 48.2 65 0.0014 23.5 5.3 28 147-174 5-32 (72)
105 PF04710 Pellino: Pellino; In 47.9 6.1 0.00013 37.9 0.0 30 230-259 302-337 (416)
106 KOG2114 Vacuolar assembly/sort 46.8 25 0.00055 36.9 4.2 47 220-267 841-889 (933)
107 KOG3899 Uncharacterized conser 45.6 7.5 0.00016 35.8 0.2 23 237-260 325-364 (381)
108 KOG3113 Uncharacterized conser 44.1 18 0.0004 32.7 2.4 45 217-262 109-159 (293)
109 PF09835 DUF2062: Uncharacteri 40.9 1.3E+02 0.0028 24.5 6.9 33 131-163 102-134 (154)
110 COG5183 SSM4 Protein involved 40.5 16 0.00035 38.2 1.6 44 218-261 11-66 (1175)
111 smart00734 ZnF_Rad18 Rad18-lik 39.4 5.7 0.00012 23.0 -1.0 9 252-260 3-11 (26)
112 PRK01844 hypothetical protein; 39.2 92 0.002 22.7 5.0 25 150-174 7-31 (72)
113 cd00729 rubredoxin_SM Rubredox 38.8 13 0.00029 22.8 0.5 27 236-265 7-33 (34)
114 KOG2068 MOT2 transcription fac 38.7 21 0.00046 33.4 2.1 46 219-265 249-302 (327)
115 PRK13872 conjugal transfer pro 37.0 43 0.00093 29.5 3.7 37 122-158 14-50 (228)
116 PF10176 DUF2370: Protein of u 37.0 66 0.0014 28.7 4.8 31 148-178 192-222 (233)
117 PF10217 DUF2039: Uncharacteri 36.8 7.3 0.00016 29.8 -1.1 37 218-259 54-90 (92)
118 KOG4218 Nuclear hormone recept 36.4 18 0.00039 34.2 1.2 17 218-234 14-30 (475)
119 KOG1812 Predicted E3 ubiquitin 36.3 11 0.00024 36.1 -0.2 31 219-250 146-180 (384)
120 PF07191 zinc-ribbons_6: zinc- 36.1 8.5 0.00019 27.9 -0.7 38 221-263 3-43 (70)
121 PF01102 Glycophorin_A: Glycop 35.0 18 0.0004 29.0 0.9 27 141-167 60-86 (122)
122 PF11190 DUF2976: Protein of u 34.3 1.8E+02 0.0038 22.0 6.0 52 118-176 2-54 (87)
123 PRK13836 conjugal transfer pro 34.1 50 0.0011 28.9 3.6 38 122-159 5-42 (220)
124 cd04488 RecG_wedge_OBF RecG_we 34.1 74 0.0016 21.5 3.9 31 93-124 41-71 (75)
125 COG1592 Rubrerythrin [Energy p 33.0 17 0.00038 30.7 0.5 26 236-265 139-164 (166)
126 PF04423 Rad50_zn_hook: Rad50 32.6 16 0.00035 24.6 0.2 10 252-261 22-31 (54)
127 KOG1705 Uncharacterized conser 32.6 17 0.00036 27.8 0.3 34 220-258 28-63 (110)
128 PF01102 Glycophorin_A: Glycop 32.0 85 0.0018 25.2 4.3 27 151-177 66-92 (122)
129 PF10571 UPF0547: Uncharacteri 31.9 20 0.00042 20.8 0.4 16 243-258 3-22 (26)
130 PF14316 DUF4381: Domain of un 31.7 1.3E+02 0.0028 24.4 5.5 12 163-174 36-47 (146)
131 PF11669 WBP-1: WW domain-bind 30.7 1.2E+02 0.0026 23.4 4.8 11 147-157 21-31 (102)
132 TIGR01562 FdhE formate dehydro 30.7 23 0.00051 32.9 1.0 42 218-259 183-233 (305)
133 KOG0825 PHD Zn-finger protein 30.6 19 0.00042 37.6 0.4 42 220-262 100-155 (1134)
134 PRK03564 formate dehydrogenase 30.1 30 0.00065 32.2 1.6 41 218-258 186-234 (309)
135 PF12906 RINGv: RING-variant d 30.0 31 0.00066 22.7 1.2 35 222-256 1-47 (47)
136 COG1198 PriA Primosomal protei 29.9 22 0.00048 37.0 0.8 15 236-250 440-454 (730)
137 PF10146 zf-C4H2: Zinc finger- 29.7 22 0.00049 31.6 0.7 20 242-261 196-219 (230)
138 KOG1815 Predicted E3 ubiquitin 28.8 20 0.00044 34.8 0.3 31 219-250 70-101 (444)
139 PF14569 zf-UDP: Zinc-binding 28.0 25 0.00055 26.0 0.6 43 219-262 9-63 (80)
140 PRK13887 conjugal transfer pro 27.9 75 0.0016 28.4 3.7 37 122-158 28-64 (250)
141 PLN02400 cellulose synthase 26.0 63 0.0014 35.1 3.3 45 218-262 35-90 (1085)
142 PF06388 DUF1075: Protein of u 25.6 3.9E+02 0.0085 22.2 7.2 40 127-170 76-116 (146)
143 PF09838 DUF2065: Uncharacteri 25.5 49 0.0011 22.8 1.6 38 127-164 15-53 (57)
144 KOG3970 Predicted E3 ubiquitin 25.5 41 0.00089 30.0 1.5 40 221-261 52-105 (299)
145 PF07047 OPA3: Optic atrophy 3 25.3 2.4E+02 0.0053 22.7 6.0 13 128-140 61-73 (134)
146 PF07245 Phlebovirus_G2: Phleb 25.1 7E+02 0.015 24.9 10.5 42 102-145 416-462 (507)
147 cd00730 rubredoxin Rubredoxin; 24.5 33 0.00072 23.1 0.6 15 251-265 35-49 (50)
148 PF10886 DUF2685: Protein of u 24.0 35 0.00077 23.4 0.7 13 251-263 2-14 (54)
149 PF09237 GAGA: GAGA factor; I 24.0 8.4 0.00018 26.3 -2.3 7 220-226 25-31 (54)
150 PF01336 tRNA_anti-codon: OB-f 23.6 86 0.0019 21.4 2.7 31 93-123 40-70 (75)
151 PF05439 JTB: Jumping transloc 23.2 27 0.00059 27.7 0.0 39 145-183 74-112 (114)
152 PHA03237 envelope glycoprotein 23.2 6.7E+02 0.014 24.5 9.4 21 10-30 181-201 (424)
153 PF12123 Amidase02_C: N-acetyl 23.2 89 0.0019 20.6 2.4 29 116-145 6-35 (45)
154 TIGR00595 priA primosomal prot 23.2 37 0.00081 33.6 1.0 15 236-250 218-232 (505)
155 KOG2034 Vacuolar sorting prote 22.6 65 0.0014 34.1 2.5 29 219-249 817-848 (911)
156 smart00834 CxxC_CXXC_SSSS Puta 22.6 33 0.00071 21.2 0.3 14 250-263 26-39 (41)
157 COG3114 CcmD Heme exporter pro 22.4 3E+02 0.0065 19.7 6.8 17 148-164 17-33 (67)
158 PF03672 UPF0154: Uncharacteri 22.4 1.6E+02 0.0035 20.9 3.8 21 154-174 4-24 (64)
159 PLN02436 cellulose synthase A 22.4 82 0.0018 34.2 3.3 45 218-262 35-90 (1094)
160 PRK00398 rpoP DNA-directed RNA 22.3 27 0.00059 22.6 -0.2 21 241-261 4-32 (46)
161 PF00558 Vpu: Vpu protein; In 22.2 1.6E+02 0.0034 22.0 3.8 21 166-186 27-47 (81)
162 PHA02610 uvsY.-2 hypothetical 22.1 41 0.00088 22.9 0.6 14 251-264 2-15 (53)
163 COG4306 Uncharacterized protei 22.0 33 0.00071 27.8 0.2 20 243-262 31-51 (160)
164 PF03908 Sec20: Sec20; InterP 21.8 2.2E+02 0.0048 21.1 4.8 27 136-162 56-85 (92)
165 PLN02915 cellulose synthase A 21.8 84 0.0018 34.0 3.2 45 218-262 14-69 (1044)
166 cd04478 RPA2_DBD_D RPA2_DBD_D: 21.0 2.1E+02 0.0046 20.8 4.6 27 94-121 44-70 (95)
167 PF07787 DUF1625: Protein of u 21.0 4E+02 0.0087 23.5 7.1 66 100-168 132-205 (248)
168 COG3809 Uncharacterized protei 20.9 33 0.00072 25.5 0.1 8 251-258 22-29 (88)
169 PLN02638 cellulose synthase A 20.9 95 0.0021 33.8 3.4 45 218-262 16-71 (1079)
170 PF15345 TMEM51: Transmembrane 20.9 50 0.0011 29.4 1.2 20 159-178 67-86 (233)
171 PF10235 Cript: Microtubule-as 20.8 51 0.0011 25.1 1.0 38 219-262 44-81 (90)
172 PF02009 Rifin_STEVOR: Rifin/s 20.6 1.8E+02 0.0038 27.1 4.7 22 161-182 271-292 (299)
No 1
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-42 Score=310.90 Aligned_cols=227 Identities=38% Similarity=0.650 Sum_probs=201.2
Q ss_pred cCCCce----EEEecCCCccceeeeeeeEEeecCcc-cccccccccccceeeeeeeeeecccCCCceEEEeEEEEECCCC
Q 024334 42 DDGTGR----AFVVGARGATGFVLTVGSEVFEESGR-SLVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIG 116 (269)
Q Consensus 42 ~d~~g~----V~V~~~~~a~~~~l~~v~~~f~~~~~-s~~~~~~~~l~g~~~~G~~~~E~vL~~G~~lt~vGel~~d~~g 116 (269)
.++++. |+|..++.+..++++++++.|+|+.+ +++++.++|++|.++.|++++|++||+|+.+|++||++.|+.+
T Consensus 122 ~~q~~~~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~ 201 (355)
T KOG1571|consen 122 RSQTTGFACEVRVSKTLGRLFLPLNVVYDLFEPSDPCSLVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYC 201 (355)
T ss_pred ccCCcceeeeeeeecceeeeeecceeeeccccccCcceeeecccccccceeeecccceEEeeccccceeeeehheecCCC
Confidence 566777 99999999999999999999999996 9999999999999999999999999999999999999999889
Q ss_pred CeEEeCCCCCCeEEeeCChHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhh
Q 024334 117 TVRIQRPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIFGTFLIAKRAIHYILQ--RKRRWELHRRVLAAAAVKRS 194 (269)
Q Consensus 117 ~~~iq~P~~g~f~lS~~s~d~Li~~l~~~ar~~~~l~iv~~~~Gv~ll~~~~~r~~~~--~r~~~~~~~~~~~~~~~~r~ 194 (269)
+.++|+|.+|++|++....|+||++++++++.+++.++++++.++++|.+...+++++ ++++.++.+....+++ .+.
T Consensus 202 ~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~k~~~~~~~-~ra 280 (355)
T KOG1571|consen 202 GVRVQPPMQGPLYVTKSAADRLISREGDLSFFVKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELVKRVEDLAT-VRA 280 (355)
T ss_pred ceEecCCccCcceeeccchhhHHHhhccceeeeeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHHHhhhhhhh-hee
Confidence 9999999999766666669999999999999999999999999999999999999998 7777777777766666 454
Q ss_pred hcccCCCCCCCCCCCCCCccCCccccccccccccccceEEeCCCCcccchhhHhcCCCCccccccccceEEcccC
Q 024334 195 EQDNEGTNGQAENGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 269 (269)
Q Consensus 195 ~~~~~~~~~~~e~~~~~~~~~~~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~~v~~f~~ 269 (269)
.....+.+..-+..+++...+...+++|+||.+++.+++|+||||+|||..|+..+++||+||+.|..++++|+|
T Consensus 281 e~~s~g~~gtr~~~~~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 281 ELLSRGVRGTRIQNENGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred eeecccccccccccccCcccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 444444433333335566667777889999999999999999999999999999999999999999999999997
No 2
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=99.95 E-value=1e-27 Score=201.09 Aligned_cols=129 Identities=37% Similarity=0.593 Sum_probs=120.0
Q ss_pred hhcccccccc----ccCCCceEEEecCCCccceeeeeeeEEeecCccccccccccccccee---eeeeeeeecccCCCce
Q 024334 31 QSRVSINSRS----WDDGTGRAFVVGARGATGFVLTVGSEVFEESGRSLVRGTLDYLQGLK---MLGVKRIERLLPTGTS 103 (269)
Q Consensus 31 ~~~~~~n~~~----~~d~~g~V~V~~~~~a~~~~l~~v~~~f~~~~~s~~~~~~~~l~g~~---~~G~~~~E~vL~~G~~ 103 (269)
.++++++... ++|+||+|+|+++..++++++++++++|+|...+..+.++++++|.+ ++|++++|+|||+|++
T Consensus 19 ~~~v~~~~~~vPF~L~D~tg~v~V~~~p~~a~l~l~~v~~~f~p~~~~~~~~~~~~~~~~~~~~~~G~r~~E~~L~~G~~ 98 (160)
T PF12483_consen 19 WRTVSSGTSEVPFYLEDGTGRVRVVDDPEGAELDLETVYDRFEPSPSSPPDGLFGFFSGERELEPKGYRYTEEILPVGTP 98 (160)
T ss_pred EEEEEcceeEcCEEEECCceEEEEecCcccCccceeeEEEEeEECCCCccceeeeeeccceeccccccEEEEEEcCCCCE
Confidence 3455666555 89999999998888999999999999999998899999999999999 9999999999999999
Q ss_pred EEEeEEEEECCCCCeEEeCCCCC--CeEEeeCChHHHHHhHhHHHHHHHHHHHHHHHH
Q 024334 104 LTVVGEAVKDDIGTVRIQRPHKG--PFYVSPKTIDELIENLGKWARWYKYASFGLTIF 159 (269)
Q Consensus 104 lt~vGel~~d~~g~~~iq~P~~g--~f~lS~~s~d~Li~~l~~~ar~~~~l~iv~~~~ 159 (269)
||++||+..|++|+++||+|++| |||||++++++|++++.+++++|++++++++++
T Consensus 99 ltvvGe~~~~~~g~~~i~~p~~g~~~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~ 156 (160)
T PF12483_consen 99 LTVVGELVRDGDGNLVIQPPKDGGQPFFISTKSEEELIRSLRSSARWWKWLAIALGVV 156 (160)
T ss_pred EEEEEEEEEcCCCcEEEeCCCCCCccEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE
Confidence 99999999999999999999998 999999999999999999999999999998776
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.4e-14 Score=97.13 Aligned_cols=50 Identities=44% Similarity=1.099 Sum_probs=46.6
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccceEEcccC
Q 024334 220 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTFRH 269 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~~v~~f~~ 269 (269)
+.|.||++++.+.|+.-|||+|.|.+|..++ ..||+||++|..+++.|++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5799999999999999999999999999887 3799999999999999974
No 4
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.3e-12 Score=120.14 Aligned_cols=53 Identities=36% Similarity=0.941 Sum_probs=47.7
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccceEEcccC
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFRH 269 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~~f~~ 269 (269)
+....|+||++..++++++||.|+|+|..|+..+ .+||+||++|..+..++.|
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~ 344 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVN 344 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheeccc
Confidence 3456899999999999999999999999999987 3799999999999988754
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.26 E-value=1.7e-12 Score=88.13 Aligned_cols=45 Identities=42% Similarity=1.125 Sum_probs=39.3
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccce
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 263 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~ 263 (269)
+..|.||++++++++++||||.+.|..|+.++ .+||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 34799999999999999999997799999998 7999999999864
No 6
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.6e-12 Score=116.14 Aligned_cols=51 Identities=43% Similarity=1.033 Sum_probs=49.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcCCCCccccccccceEEcccC
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 269 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~~v~~f~~ 269 (269)
..+|.||++.|++++||+|||+..|..|-..|..|||||+.|.+++++|+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 569999999999999999999999999999999999999999999999973
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.5e-10 Score=102.32 Aligned_cols=45 Identities=36% Similarity=0.918 Sum_probs=40.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccce
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 263 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~ 263 (269)
....|.+|++++.+...+||||+| ||.|+..| ..||+||.+....
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCc
Confidence 346899999999999999999999 99999988 5899999988654
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.5e-09 Score=94.73 Aligned_cols=50 Identities=30% Similarity=0.725 Sum_probs=43.7
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-------CCCcccccccc--ceEEcc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRID--QVVRTF 267 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-------~~CPiCR~~I~--~~v~~f 267 (269)
.....|-||++..++.|++.|||++ ||.|+.+| +.||+|+..|+ .++++|
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3455899999999999999999999 99999988 47999998774 588887
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.78 E-value=4.1e-09 Score=90.31 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=41.8
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC--------------------CCCccccccccc--eEEcc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--------------------TNCPLCRRRIDQ--VVRTF 267 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l--------------------~~CPiCR~~I~~--~v~~f 267 (269)
....|.||++...+.++++|||.+ |+.|+..| .+||+||..|.. ++++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 356899999999999999999999 99999753 379999999965 66665
No 10
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2e-07 Score=81.49 Aligned_cols=47 Identities=36% Similarity=0.824 Sum_probs=44.7
Q ss_pred ccccccccccceEEeCCCCcccchhhHhcCCCCccccccccceEEcc
Q 024334 221 LCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTF 267 (269)
Q Consensus 221 ~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~~v~~f 267 (269)
.|..|.++...++++||.|+++|..|...++.||+|+.++.+.+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999998889999999999998876
No 11
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.2e-07 Score=84.53 Aligned_cols=42 Identities=38% Similarity=0.806 Sum_probs=34.9
Q ss_pred cccccccccccc---eEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 220 DLCVICLEQEYN---AVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~~~---~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
..|+||++.... ...|||.|.+ -..|+..| +.||+|++.|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence 589999997654 6678999999 45999988 359999998865
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.44 E-value=6.4e-08 Score=62.12 Aligned_cols=34 Identities=41% Similarity=1.082 Sum_probs=29.0
Q ss_pred cccccccccce-EEeCCCCcccchhhHhcC----CCCccc
Q 024334 222 CVICLEQEYNA-VFVPCGHMCCCIICSWHL----TNCPLC 256 (269)
Q Consensus 222 C~IC~~~~~~~-v~lpCgH~~~C~~C~~~l----~~CPiC 256 (269)
|+||++..++. ++++|||.+ |.+|+.++ .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 89999999998 789999998 99999876 589988
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.44 E-value=1.1e-07 Score=84.66 Aligned_cols=47 Identities=32% Similarity=0.865 Sum_probs=38.6
Q ss_pred ccccccccccccc--------eEEeCCCCcccchhhHhcC----CCCccccccccceEEc
Q 024334 219 PDLCVICLEQEYN--------AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRT 266 (269)
Q Consensus 219 ~~~C~IC~~~~~~--------~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~~ 266 (269)
...|+||++...+ .++.+|||.| |..|...| ..||+||.++..+++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3589999997433 4667899999 99999887 5899999999987763
No 14
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.36 E-value=1.2e-07 Score=62.33 Aligned_cols=36 Identities=42% Similarity=0.919 Sum_probs=30.7
Q ss_pred ccccccccc---cceEEeCCCCcccchhhHhcC----CCCcccc
Q 024334 221 LCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCR 257 (269)
Q Consensus 221 ~C~IC~~~~---~~~v~lpCgH~~~C~~C~~~l----~~CPiCR 257 (269)
.|+||++.. ..++.+||||.+ |.+|+..+ .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 699999875 568888999999 99999987 6999998
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.7e-07 Score=78.90 Aligned_cols=47 Identities=34% Similarity=0.817 Sum_probs=37.6
Q ss_pred cccccccccccceE--EeCCCCcccchhhHhcC----CCCccccccccc--eEEcc
Q 024334 220 DLCVICLEQEYNAV--FVPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 267 (269)
Q Consensus 220 ~~C~IC~~~~~~~v--~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~--~v~~f 267 (269)
-.|+|||+....-+ -+.|||+| |..|+... .+||+||.+|+. +.++|
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 48999999876644 47999999 99999876 489999998875 44444
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.24 E-value=5.3e-07 Score=59.43 Aligned_cols=36 Identities=39% Similarity=1.046 Sum_probs=31.5
Q ss_pred cccccccc---cceEEeCCCCcccchhhHhcCC----CCccccc
Q 024334 222 CVICLEQE---YNAVFVPCGHMCCCIICSWHLT----NCPLCRR 258 (269)
Q Consensus 222 C~IC~~~~---~~~v~lpCgH~~~C~~C~~~l~----~CPiCR~ 258 (269)
|.+|++.. ....+++|||.+ |..|+..+. .||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 88888776 468899999998 999999886 9999985
No 17
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4e-07 Score=87.52 Aligned_cols=48 Identities=35% Similarity=0.784 Sum_probs=41.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC---------CCCccccccccc--eEEcc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------TNCPLCRRRIDQ--VVRTF 267 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l---------~~CPiCR~~I~~--~v~~f 267 (269)
+..|+||++.+.-++.+.|||++ |..|+.++ ..||+||..|.. +.++|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 56899999999999999999999 89998765 489999999987 55543
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.16 E-value=5.1e-07 Score=78.70 Aligned_cols=46 Identities=35% Similarity=0.827 Sum_probs=37.4
Q ss_pred ccccccccccc---------cceEEeCCCCcccchhhHhcCC----------CCccccccccceEE
Q 024334 219 PDLCVICLEQE---------YNAVFVPCGHMCCCIICSWHLT----------NCPLCRRRIDQVVR 265 (269)
Q Consensus 219 ~~~C~IC~~~~---------~~~v~lpCgH~~~C~~C~~~l~----------~CPiCR~~I~~~v~ 265 (269)
+..|.||++.. +-.++.+|+|.| |..|+..|. .||+||+.+..+.+
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 45899999863 236888999998 999999882 39999999887654
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.12 E-value=1.3e-06 Score=57.20 Aligned_cols=34 Identities=44% Similarity=1.001 Sum_probs=27.2
Q ss_pred cccccccccceEEeCCCCcccchhhHhcC--------CCCccc
Q 024334 222 CVICLEQEYNAVFVPCGHMCCCIICSWHL--------TNCPLC 256 (269)
Q Consensus 222 C~IC~~~~~~~v~lpCgH~~~C~~C~~~l--------~~CPiC 256 (269)
|+||++-..+.+.++|||.+ |..|+.++ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999 99999876 158887
No 20
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=8e-07 Score=88.99 Aligned_cols=42 Identities=29% Similarity=0.673 Sum_probs=38.3
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 220 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
-.|.+|.++++++|++.|||+| |..|.... .+||.|.+++..
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred eeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4899999999999999999999 99999865 699999998854
No 21
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.7e-06 Score=77.08 Aligned_cols=43 Identities=35% Similarity=0.875 Sum_probs=37.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhc-C-----CCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWH-L-----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~-l-----~~CPiCR~~I~~ 262 (269)
+..|.||++.+.....+||||+| |+.|... + ..||+||+.+.-
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhccc
Confidence 45899999999999999999999 9999987 4 259999997643
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.01 E-value=2.1e-06 Score=55.32 Aligned_cols=34 Identities=47% Similarity=1.112 Sum_probs=30.5
Q ss_pred cccccccccceE-EeCCCCcccchhhHhcC------CCCccc
Q 024334 222 CVICLEQEYNAV-FVPCGHMCCCIICSWHL------TNCPLC 256 (269)
Q Consensus 222 C~IC~~~~~~~v-~lpCgH~~~C~~C~~~l------~~CPiC 256 (269)
|.||++...+.+ +++|||.+ |..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 889999999988 99999998 99999876 479987
No 23
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.99 E-value=3.9e-06 Score=53.96 Aligned_cols=39 Identities=46% Similarity=1.024 Sum_probs=30.9
Q ss_pred ccccccccccceEE-eCCCCcccchhhHhcC-----CCCccccccc
Q 024334 221 LCVICLEQEYNAVF-VPCGHMCCCIICSWHL-----TNCPLCRRRI 260 (269)
Q Consensus 221 ~C~IC~~~~~~~v~-lpCgH~~~C~~C~~~l-----~~CPiCR~~I 260 (269)
.|.||++...+.+. .+|||.+ |..|...+ ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 48999999855544 4599998 99999755 4799999764
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.97 E-value=3.9e-06 Score=52.06 Aligned_cols=34 Identities=44% Similarity=1.150 Sum_probs=30.3
Q ss_pred cccccccccceEEeCCCCcccchhhHhcC-----CCCccc
Q 024334 222 CVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLC 256 (269)
Q Consensus 222 C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiC 256 (269)
|.||++...+.+++||||.+ |..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 78999999999999999998 99999865 469987
No 25
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.95 E-value=2.3e-06 Score=80.11 Aligned_cols=46 Identities=35% Similarity=0.831 Sum_probs=41.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC------CCCccccccccceEE
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQVVR 265 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l------~~CPiCR~~I~~~v~ 265 (269)
-.+|.||-++.+++-+-||||+. |..|...| +.||.||..|.+.-+
T Consensus 369 FeLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 35999999999999999999998 99999888 489999999987543
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.84 E-value=1e-05 Score=56.78 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=37.1
Q ss_pred ccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 221 LCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 221 ~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
.|.||.+-..+.+.+||||++ |..|+..+ ..||+|+.+++.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCCh
Confidence 699999999999999999999 99999877 589999998843
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=7.5e-06 Score=77.87 Aligned_cols=45 Identities=29% Similarity=0.637 Sum_probs=39.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
.....|.||++...+.+++||||.| |..|+..+ ..||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 3456899999999999999999999 99999865 479999998764
No 28
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=4.8e-05 Score=70.83 Aligned_cols=42 Identities=31% Similarity=0.872 Sum_probs=33.3
Q ss_pred cccccccccccc-------------cceEEeCCCCcccchhhHhcC----CCCccccccc
Q 024334 218 MPDLCVICLEQE-------------YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRI 260 (269)
Q Consensus 218 ~~~~C~IC~~~~-------------~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I 260 (269)
+++.|.||++.. +...=+||||.. --.|...| ++||+||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 345899999872 223557999987 78999887 6999999984
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.60 E-value=2.3e-05 Score=51.54 Aligned_cols=27 Identities=41% Similarity=0.920 Sum_probs=18.0
Q ss_pred cccccccccc----eEEeCCCCcccchhhHhcC
Q 024334 222 CVICLEQEYN----AVFVPCGHMCCCIICSWHL 250 (269)
Q Consensus 222 C~IC~~~~~~----~v~lpCgH~~~C~~C~~~l 250 (269)
|+||.+ ..+ .+.|||||++ |.+|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHH
Confidence 889998 666 8889999999 99999887
No 30
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=3.9e-05 Score=69.72 Aligned_cols=41 Identities=29% Similarity=0.679 Sum_probs=34.9
Q ss_pred cccccccccc---cceEEeCCCCcccchhhHhcC-----CCCcccccccc
Q 024334 220 DLCVICLEQE---YNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRID 261 (269)
Q Consensus 220 ~~C~IC~~~~---~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~ 261 (269)
-.|+||+++. -..+.+||.|.+ -..|..+| .+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence 4899999875 237888999999 79999998 48999999875
No 31
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.7e-05 Score=70.48 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=38.9
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
++++|+||+..+.+++|.||+|.- |..|+.+- +.|-.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence 356999999999999999999998 99999864 689999988764
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.42 E-value=5.7e-05 Score=68.27 Aligned_cols=43 Identities=28% Similarity=0.538 Sum_probs=37.9
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRI 260 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I 260 (269)
+....|.||-..-+..+.++|||.| |.-|+... +.||+||.+.
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccH
Confidence 3455899999999999999999999 99999875 6999999764
No 33
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.41 E-value=7.7e-05 Score=54.54 Aligned_cols=36 Identities=42% Similarity=0.945 Sum_probs=28.0
Q ss_pred ccccccccc-------------cceEEeCCCCcccchhhHhcC----CCCcccc
Q 024334 221 LCVICLEQE-------------YNAVFVPCGHMCCCIICSWHL----TNCPLCR 257 (269)
Q Consensus 221 ~C~IC~~~~-------------~~~v~lpCgH~~~C~~C~~~l----~~CPiCR 257 (269)
.|.||++.- ..++..+|||.| ...|+.++ ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 499999754 334667999999 89999987 5899998
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.38 E-value=5.2e-05 Score=69.84 Aligned_cols=43 Identities=28% Similarity=0.711 Sum_probs=38.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
--.|-||.+=.+.++++||+|.| |.-|+... +.||.|+..++.
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence 34799999999999999999999 99999886 799999987754
No 35
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.30 E-value=0.00011 Score=50.50 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=37.3
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC--CCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l--~~CPiCR~~I~~ 262 (269)
...|+.|......-+++||||+. |..|.... ..||+|..+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 44799999999999999999998 99998654 699999998864
No 36
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.27 E-value=0.00029 Score=65.21 Aligned_cols=48 Identities=35% Similarity=0.726 Sum_probs=40.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC------CCCccccccccceEE
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQVVR 265 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l------~~CPiCR~~I~~~v~ 265 (269)
++...|+||-..-.-...+||+|.. |..|+.++ +.||+||..-..++-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred cccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEEE
Confidence 4456999999999888999999998 99999876 589999987766553
No 37
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=9e-05 Score=65.55 Aligned_cols=40 Identities=40% Similarity=0.841 Sum_probs=35.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcCC----CCccccc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLT----NCPLCRR 258 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~----~CPiCR~ 258 (269)
....|.||++..+...++||||.+ |..|...+. .||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 345899999999999999999999 999998863 8999994
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00052 Score=68.23 Aligned_cols=42 Identities=36% Similarity=0.838 Sum_probs=36.4
Q ss_pred cccccccccccccc-----eEEeCCCCcccchhhHhcC----CCCccccccc
Q 024334 218 MPDLCVICLEQEYN-----AVFVPCGHMCCCIICSWHL----TNCPLCRRRI 260 (269)
Q Consensus 218 ~~~~C~IC~~~~~~-----~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I 260 (269)
....|.||.+.-.. ...+||||.+ +..|...| ..||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence 35689999998777 7889999999 99999988 6999999833
No 39
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.71 E-value=0.00092 Score=48.71 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=33.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
...|+|+.+-..+.|++||||.+ +..|+.++ ..||+|+++++.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45899999999999999999999 99999876 479999998875
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.64 E-value=0.00086 Score=47.61 Aligned_cols=40 Identities=28% Similarity=0.718 Sum_probs=22.5
Q ss_pred cccccccccccceE-EeCCCCcccchhhHhcC--CCCccccccc
Q 024334 220 DLCVICLEQEYNAV-FVPCGHMCCCIICSWHL--TNCPLCRRRI 260 (269)
Q Consensus 220 ~~C~IC~~~~~~~v-~lpCgH~~~C~~C~~~l--~~CPiCR~~I 260 (269)
-.|.+|.+--+++| +..|.|.| |..|+..- ..||+|+.+-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B--TTTGGGGTTTB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHH-HHHHhHHhcCCCCCCcCChH
Confidence 36999999999986 57999999 99999876 6899999775
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.55 E-value=0.00075 Score=58.09 Aligned_cols=46 Identities=28% Similarity=0.691 Sum_probs=39.3
Q ss_pred CccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 216 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
+..+.+|.||-...+..|.+.|||.| |..|+..- +.|-+|...--.
T Consensus 193 e~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 193 EKIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred CCCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhcc
Confidence 34578999999999999999999999 99998864 689999876543
No 42
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.00045 Score=64.12 Aligned_cols=44 Identities=30% Similarity=0.793 Sum_probs=36.5
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhcC-----CCCccccccccce
Q 024334 219 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRRRIDQV 263 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l-----~~CPiCR~~I~~~ 263 (269)
...|.||++--+..+.+ .|+|.| |.+|++.. ..||.||+...+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence 45899999988776665 599999 99999875 5899999887653
No 43
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.25 E-value=0.0031 Score=60.32 Aligned_cols=41 Identities=29% Similarity=0.715 Sum_probs=32.3
Q ss_pred ccccccccccccccc----eEEeCCCCcccchhhHhcCC--CCccccc
Q 024334 217 VMPDLCVICLEQEYN----AVFVPCGHMCCCIICSWHLT--NCPLCRR 258 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~----~v~lpCgH~~~C~~C~~~l~--~CPiCR~ 258 (269)
.+-+.|+||+++.-. ++-++|.|.|-| .|...|+ .||+||=
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~~scpvcR~ 219 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWDSSCPVCRY 219 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccch-HHHhhcccCcChhhhh
Confidence 445699999998633 355689999965 8999884 9999994
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0027 Score=60.69 Aligned_cols=45 Identities=36% Similarity=0.808 Sum_probs=38.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
..+..|.||+..-...+.+||||.+ |..|..+. ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 4567999999999999999999999 99996654 689999988765
No 45
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0017 Score=62.65 Aligned_cols=44 Identities=30% Similarity=0.723 Sum_probs=35.7
Q ss_pred ccccccccccc-----------------ccceEEeCCCCcccchhhHhcC----C-CCccccccccc
Q 024334 218 MPDLCVICLEQ-----------------EYNAVFVPCGHMCCCIICSWHL----T-NCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~-----------------~~~~v~lpCgH~~~C~~C~~~l----~-~CPiCR~~I~~ 262 (269)
....|+||++. .++.+++||.|++ -..|..++ + .||+||+++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCCC
Confidence 34579999962 3568889999999 79999887 3 89999998764
No 46
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0026 Score=57.87 Aligned_cols=48 Identities=27% Similarity=0.710 Sum_probs=41.1
Q ss_pred CCccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccce
Q 024334 215 DRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 263 (269)
Q Consensus 215 ~~~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~ 263 (269)
....+..|-||..-..+.|...|||.| |..|+..- ..|++|.+.+.++
T Consensus 237 ~~~~Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 237 IELLPFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred cccCCccccccccccccchhhcCCcee-ehhhhccccccCCcceecccccccc
Confidence 334566899999999999999999999 99999764 5899999988764
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0025 Score=59.75 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=37.7
Q ss_pred ccccccccccccceE-----E---eCCCCcccchhhHhcC-----------CCCccccccccceEE
Q 024334 219 PDLCVICLEQEYNAV-----F---VPCGHMCCCIICSWHL-----------TNCPLCRRRIDQVVR 265 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v-----~---lpCgH~~~C~~C~~~l-----------~~CPiCR~~I~~~v~ 265 (269)
...|.||+++..+.. | .+|-|.+ |-.|+..| +.||.||.....+.+
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 458999999876666 5 7899998 99999887 379999998876544
No 48
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.38 E-value=0.01 Score=44.62 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=23.9
Q ss_pred eEEeCCCCcccchhhHhcC-------CCCcccccccc
Q 024334 232 AVFVPCGHMCCCIICSWHL-------TNCPLCRRRID 261 (269)
Q Consensus 232 ~v~lpCgH~~~C~~C~~~l-------~~CPiCR~~I~ 261 (269)
.++-.|+|.| -..|+.++ ..||+||++..
T Consensus 47 lv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 4666899999 79999876 48999999764
No 49
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.14 Score=46.33 Aligned_cols=46 Identities=24% Similarity=0.655 Sum_probs=35.7
Q ss_pred Ccccccccccccccc----------ceEEeCCCCcccchhhHhcC------CCCccccccccc
Q 024334 216 RVMPDLCVICLEQEY----------NAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~----------~~v~lpCgH~~~C~~C~~~l------~~CPiCR~~I~~ 262 (269)
..+++.|.||-.+-- +.--+.|+|++ -+.|+..+ +.||-|+.+|+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence 345669999986432 33457999999 79999987 699999998864
No 50
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.025 Score=51.12 Aligned_cols=46 Identities=26% Similarity=0.657 Sum_probs=36.7
Q ss_pred ccccccccccccccceE-EeCCCCcccchhhHhcC---C---CCccccccccce
Q 024334 217 VMPDLCVICLEQEYNAV-FVPCGHMCCCIICSWHL---T---NCPLCRRRIDQV 263 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v-~lpCgH~~~C~~C~~~l---~---~CPiCR~~I~~~ 263 (269)
...-.|++|-+.|..+. ..||||.+ |..|+.+- . .||.|..+...+
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcch
Confidence 34558999999998864 45799999 99998864 2 899999887643
No 51
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.45 E-value=0.018 Score=53.12 Aligned_cols=44 Identities=30% Similarity=0.787 Sum_probs=36.6
Q ss_pred cccccccccccccceEEeCC--CCcccchhhHhcC-CCCccccccccce
Q 024334 218 MPDLCVICLEQEYNAVFVPC--GHMCCCIICSWHL-TNCPLCRRRIDQV 263 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpC--gH~~~C~~C~~~l-~~CPiCR~~I~~~ 263 (269)
+-..|+||.+.-.-.++ -| ||+. |..|...+ .+||.||.+|..+
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcccCCccccccccH
Confidence 34589999999888888 45 7998 99999665 6999999999853
No 52
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.2 Score=46.49 Aligned_cols=52 Identities=23% Similarity=0.613 Sum_probs=36.5
Q ss_pred CCccccccccccccccceEEe-CCCCcccchhhHhcC----CCCcccccc--ccceEEcc
Q 024334 215 DRVMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRR--IDQVVRTF 267 (269)
Q Consensus 215 ~~~~~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l----~~CPiCR~~--I~~~v~~f 267 (269)
...+...|++|+....+...+ --|-++ |..|+... ..||+-..+ +..++++|
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 344566999999988775554 458888 99999875 689985543 34444444
No 53
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.81 E-value=0.048 Score=49.27 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=36.8
Q ss_pred Cccccccccccccc----cceEEeCCCCcccchhhHhcCC---CCccccccccc
Q 024334 216 RVMPDLCVICLEQE----YNAVFVPCGHMCCCIICSWHLT---NCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~----~~~v~lpCgH~~~C~~C~~~l~---~CPiCR~~I~~ 262 (269)
......|+|..... +-+.+.||||++ +..+...+. .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhcccccccccCCcccc
Confidence 34566999998543 456667999999 899999886 89999999765
No 54
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.65 E-value=0.021 Score=58.07 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=32.9
Q ss_pred cccccccccccceEE---eCCCCcccchhhHhcC----CCCccccccccceEE
Q 024334 220 DLCVICLEQEYNAVF---VPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 265 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~---lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~ 265 (269)
..|.+|+..-.+-.. .+|+|.| |..|+..| .+||+||..+..++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeee
Confidence 366677655443222 4899998 99999998 599999988877554
No 55
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.64 E-value=0.026 Score=57.59 Aligned_cols=41 Identities=32% Similarity=0.797 Sum_probs=35.6
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC------CCCccccccccc
Q 024334 220 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l------~~CPiCR~~I~~ 262 (269)
..|.+|++ ...+++++|||.+ |.+|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 8889999999999 99998765 379999987654
No 56
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.024 Score=52.05 Aligned_cols=45 Identities=27% Similarity=0.679 Sum_probs=32.3
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhHhcC--CCCccccccccceE
Q 024334 219 PDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQVV 264 (269)
Q Consensus 219 ~~~C~IC~~~~~~-~v~lpCgH~~~C~~C~~~l--~~CPiCR~~I~~~v 264 (269)
-.-|.-|----.. --++||.|+| |.+|+..- +.||.|-.+|.++.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvF-Cl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVF-CLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred eEeecccCCcceeeecccccchhh-hhhhhhcCccccCcCcccHHHHHH
Confidence 3467666433222 3457999999 99999876 59999998887643
No 57
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.033 Score=52.97 Aligned_cols=40 Identities=30% Similarity=0.660 Sum_probs=31.7
Q ss_pred cccccccccccc---ceEEeCCCCcccchhhHhcC------------CCCcccccc
Q 024334 219 PDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL------------TNCPLCRRR 259 (269)
Q Consensus 219 ~~~C~IC~~~~~---~~v~lpCgH~~~C~~C~~~l------------~~CPiCR~~ 259 (269)
...|.||++... ..+++||+|++ |..|.... -+||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHH-HHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 457999998764 48999999999 99998764 278877644
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.87 E-value=0.06 Score=51.56 Aligned_cols=46 Identities=33% Similarity=0.724 Sum_probs=38.9
Q ss_pred ccccccccccccccceEE-eCCCCcccchhhHhcC----CCCccccccccce
Q 024334 217 VMPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL----TNCPLCRRRIDQV 263 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~-lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~ 263 (269)
..+..|.+|..--++.+- +.|||.+ |..|...+ +.||.|++.+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchh
Confidence 345689999999999988 5999999 99999887 5899999877654
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.11 E-value=0.059 Score=52.82 Aligned_cols=42 Identities=21% Similarity=0.593 Sum_probs=35.8
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC---------CCCccccccc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------TNCPLCRRRI 260 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l---------~~CPiCR~~I 260 (269)
....|.+|.+...+.+...|.|.| |.-|.... .+||+|-...
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence 345899999999999999999999 99998654 4899997543
No 60
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=90.58 E-value=0.15 Score=34.29 Aligned_cols=36 Identities=25% Similarity=0.729 Sum_probs=27.7
Q ss_pred ccccccc--cccceEEeCCC-----CcccchhhHhcC------CCCcccc
Q 024334 221 LCVICLE--QEYNAVFVPCG-----HMCCCIICSWHL------TNCPLCR 257 (269)
Q Consensus 221 ~C~IC~~--~~~~~v~lpCg-----H~~~C~~C~~~l------~~CPiCR 257 (269)
.|.||++ .+.+..+.||. |.+ -..|..+| ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 3889996 56677888996 555 68899887 3799995
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=89.94 E-value=0.12 Score=56.05 Aligned_cols=46 Identities=26% Similarity=0.853 Sum_probs=34.8
Q ss_pred ccccccccccccc---cceEEeCCCCcccchhhHhcC--------------CCCccccccccce
Q 024334 217 VMPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL--------------TNCPLCRRRIDQV 263 (269)
Q Consensus 217 ~~~~~C~IC~~~~---~~~v~lpCgH~~~C~~C~~~l--------------~~CPiCR~~I~~~ 263 (269)
+.++.|+||+... .-++-+.|+|+| -..|-..+ -.||+|.++|...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3456999999875 446788999999 56665442 2899999999754
No 62
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.86 E-value=0.8 Score=34.87 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=21.9
Q ss_pred cccccccccccc--ceEEeCCCCcccchhhHh
Q 024334 219 PDLCVICLEQEY--NAVFVPCGHMCCCIICSW 248 (269)
Q Consensus 219 ~~~C~IC~~~~~--~~v~lpCgH~~~C~~C~~ 248 (269)
...|.+|...-. ..++.||||++ ...|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 457999997644 45556999998 788864
No 63
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=89.62 E-value=0.35 Score=44.66 Aligned_cols=49 Identities=4% Similarity=-0.182 Sum_probs=42.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC--CCCccccccccceEEc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQVVRT 266 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l--~~CPiCR~~I~~~v~~ 266 (269)
....|.+|-.+--..++.||||...|.+|+..- +.||+|....-..+++
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 345899999999999999999999999999854 6999999877777665
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.22 E-value=0.32 Score=43.50 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=33.3
Q ss_pred cccccccccccc----eEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 220 DLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~~~----~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
-.|++|.+.-.+ +++-||||++ |.+|..++ ..||+|-.+...
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence 489999865433 5667999999 99999987 489999877643
No 65
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.67 E-value=1 Score=42.65 Aligned_cols=41 Identities=29% Similarity=0.775 Sum_probs=28.7
Q ss_pred ccccccccccccceEEe-CC----------------C-----CcccchhhHhcC-----------------CCCcccccc
Q 024334 219 PDLCVICLEQEYNAVFV-PC----------------G-----HMCCCIICSWHL-----------------TNCPLCRRR 259 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~l-pC----------------g-----H~~~C~~C~~~l-----------------~~CPiCR~~ 259 (269)
.+.|.-|+..+.++.+. .| . -++ |-+|..++ ..||.||++
T Consensus 271 ~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmW-C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 271 LEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMW-CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred cCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchH-HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 44788888888777765 23 2 233 77887765 279999987
Q ss_pred c
Q 024334 260 I 260 (269)
Q Consensus 260 I 260 (269)
+
T Consensus 350 F 350 (358)
T PF10272_consen 350 F 350 (358)
T ss_pred c
Confidence 5
No 66
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=87.62 E-value=0.17 Score=48.14 Aligned_cols=43 Identities=28% Similarity=0.731 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cccceEEeCCCCcccchhhHhcC-------------CCCccccccccc
Q 024334 219 PDLCVICLE-------------------QEYNAVFVPCGHMCCCIICSWHL-------------TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~-------------------~~~~~v~lpCgH~~~C~~C~~~l-------------~~CPiCR~~I~~ 262 (269)
...|++|+. .+...+|.||||++ =...+.-| ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 558999985 23557889999997 34444433 389999999875
No 67
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.25 E-value=0.24 Score=40.25 Aligned_cols=44 Identities=30% Similarity=0.706 Sum_probs=36.2
Q ss_pred ccccccccccceEEeC----CCCcccchhhHhcC-------CCCccccccccceEE
Q 024334 221 LCVICLEQEYNAVFVP----CGHMCCCIICSWHL-------TNCPLCRRRIDQVVR 265 (269)
Q Consensus 221 ~C~IC~~~~~~~v~lp----CgH~~~C~~C~~~l-------~~CPiCR~~I~~~v~ 265 (269)
.|-||.+...+--|+. ||-.. |..|...+ +.||+|+.++.+.-.
T Consensus 82 eCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred eccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccccc
Confidence 7999999999988872 77655 99998876 599999999876543
No 68
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.64 E-value=0.29 Score=51.26 Aligned_cols=41 Identities=29% Similarity=0.648 Sum_probs=29.1
Q ss_pred ccccccccc-------cceEEeCCCCcccchhhHhcC------CCCccccccccc
Q 024334 221 LCVICLEQE-------YNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 262 (269)
Q Consensus 221 ~C~IC~~~~-------~~~v~lpCgH~~~C~~C~~~l------~~CPiCR~~I~~ 262 (269)
.|+|||.-- .+-..--|.|-+ -..|.-+| .+||+||..|+-
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCcccccccc
Confidence 699999621 111122488888 68898887 599999988863
No 69
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.09 E-value=0.34 Score=45.23 Aligned_cols=43 Identities=37% Similarity=0.967 Sum_probs=31.2
Q ss_pred ccccccccccc--cceEEe--CCCCcccchhhHhcC-----CCCccccccccc
Q 024334 219 PDLCVICLEQE--YNAVFV--PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~--~~~v~l--pCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
++.|+.|++.. .+--|. |||-.. |..|...+ .+||-||+..+.
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhccc
Confidence 34699999864 223343 677776 99998876 499999987654
No 70
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=84.01 E-value=0.22 Score=46.22 Aligned_cols=46 Identities=24% Similarity=0.475 Sum_probs=37.5
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhcC----CCCccccccccceEE
Q 024334 219 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 265 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~ 265 (269)
...|.+|-.=-.++..+ .|=|.| |..|+.+. ..||.|...|-...+
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCccc
Confidence 34799998887776554 699999 99999875 689999999877654
No 71
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.66 E-value=0.27 Score=43.80 Aligned_cols=39 Identities=26% Similarity=0.712 Sum_probs=29.0
Q ss_pred ccccccccccc---cceEEe--C-CCCcccchhhHhcC-----CCCc--cccc
Q 024334 219 PDLCVICLEQE---YNAVFV--P-CGHMCCCIICSWHL-----TNCP--LCRR 258 (269)
Q Consensus 219 ~~~C~IC~~~~---~~~v~l--p-CgH~~~C~~C~~~l-----~~CP--iCR~ 258 (269)
+..|++|.... .++.++ | |-|.. |.+|..++ ..|| -|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence 44899998753 334443 6 99998 99999887 3899 7764
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=83.26 E-value=0.5 Score=31.69 Aligned_cols=38 Identities=34% Similarity=0.876 Sum_probs=16.5
Q ss_pred cccccccc--cceEEeC--CCCcccchhhHhcC-----CCCccccccc
Q 024334 222 CVICLEQE--YNAVFVP--CGHMCCCIICSWHL-----TNCPLCRRRI 260 (269)
Q Consensus 222 C~IC~~~~--~~~v~lp--CgH~~~C~~C~~~l-----~~CPiCR~~I 260 (269)
|++|.+.. ++.-|.| ||+.. |..|...+ ..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 34454432 3344554 77887 99998765 3799999874
No 73
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=82.84 E-value=0.69 Score=42.86 Aligned_cols=43 Identities=26% Similarity=0.642 Sum_probs=28.5
Q ss_pred cccccccccc-------------------ccceEEeCCCCcccchhhHhcC-------------CCCccccccccc
Q 024334 219 PDLCVICLEQ-------------------EYNAVFVPCGHMCCCIICSWHL-------------TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~-------------------~~~~v~lpCgH~~~C~~C~~~l-------------~~CPiCR~~I~~ 262 (269)
+..|++|+.- +..-.|-||||+|. ..=..-| ..||.|-+..+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccc-hhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4589999863 34456789999973 2222111 379999988765
No 74
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.32 E-value=0.61 Score=42.89 Aligned_cols=38 Identities=34% Similarity=0.697 Sum_probs=31.9
Q ss_pred cccccccccccceEEeC-CCCcccchhhHhcC-----CCCccccc
Q 024334 220 DLCVICLEQEYNAVFVP-CGHMCCCIICSWHL-----TNCPLCRR 258 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~lp-CgH~~~C~~C~~~l-----~~CPiCR~ 258 (269)
..|+.|..--++.+=+| |||.+ |.+|+... -.||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 58999998888887775 88998 99999843 59999987
No 75
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=79.39 E-value=1.2 Score=30.87 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=25.0
Q ss_pred ccccccccccccccceEEe-CCCCcccchhhHhcC------CCCcc
Q 024334 217 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPL 255 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l------~~CPi 255 (269)
.....|+|.+....+.|-- .|||.+ ..+.+..+ ..||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 3456899999999998875 899999 78887765 37998
No 76
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=77.77 E-value=0.65 Score=33.47 Aligned_cols=42 Identities=26% Similarity=0.610 Sum_probs=18.6
Q ss_pred ccccccccccc-c-----eEEe--CCCCcccchhhHhcC---------------CCCccccccccc
Q 024334 220 DLCVICLEQEY-N-----AVFV--PCGHMCCCIICSWHL---------------TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~~-~-----~v~l--pCgH~~~C~~C~~~l---------------~~CPiCR~~I~~ 262 (269)
..|.||++..- + .+-- .|++.+ -..|...| .+||.|+.+|+-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 36999997643 1 1111 566666 56787665 269999999863
No 77
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=74.94 E-value=0.98 Score=36.84 Aligned_cols=30 Identities=33% Similarity=0.658 Sum_probs=24.9
Q ss_pred cccccccccccc---eEEeCCC------CcccchhhHhcC
Q 024334 220 DLCVICLEQEYN---AVFVPCG------HMCCCIICSWHL 250 (269)
Q Consensus 220 ~~C~IC~~~~~~---~v~lpCg------H~~~C~~C~~~l 250 (269)
..|.||+++--+ +|.++|| |++ |.+|..++
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw 65 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRW 65 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHH
Confidence 379999987544 7888998 676 99999988
No 78
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.90 E-value=1.2 Score=44.92 Aligned_cols=39 Identities=41% Similarity=0.833 Sum_probs=30.6
Q ss_pred ccccccccc----cccceEEeCCCCcccchhhHhcC--CCCcccccc
Q 024334 219 PDLCVICLE----QEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRR 259 (269)
Q Consensus 219 ~~~C~IC~~----~~~~~v~lpCgH~~~C~~C~~~l--~~CPiCR~~ 259 (269)
--.|.||+. .....+++-|||.. |..|...+ ..|| |...
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhccCC-CCcc
Confidence 347899964 45668889999998 99999988 5898 6543
No 79
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=73.79 E-value=1.6 Score=29.23 Aligned_cols=42 Identities=19% Similarity=0.615 Sum_probs=24.3
Q ss_pred ccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccceE
Q 024334 221 LCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 264 (269)
Q Consensus 221 ~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v 264 (269)
-|.-|.-..+..| .|.--.+|-.|...| ..||+|..++...+
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 4778887777766 488666799999987 58999998876543
No 80
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.14 E-value=5.3 Score=32.65 Aligned_cols=39 Identities=33% Similarity=0.801 Sum_probs=23.6
Q ss_pred ccccccccccccceEEeCCCCcc------cchhhHhcC--------CCCccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMC------CCIICSWHL--------TNCPLCRRRI 260 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~------~C~~C~~~l--------~~CPiCR~~I 260 (269)
+..|-||+... ..--|||.| +|..|--+. +.|-.|+...
T Consensus 65 datC~IC~KTK---FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 65 DATCGICHKTK---FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred Ccchhhhhhcc---cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 44899998543 122489986 355554332 4688887543
No 81
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=71.27 E-value=6.5 Score=31.08 Aligned_cols=39 Identities=26% Similarity=0.538 Sum_probs=25.9
Q ss_pred ccccccccccc-----cceEEeCCCCcccchhhHhcC-----CCCccccc
Q 024334 219 PDLCVICLEQE-----YNAVFVPCGHMCCCIICSWHL-----TNCPLCRR 258 (269)
Q Consensus 219 ~~~C~IC~~~~-----~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~ 258 (269)
...|.+|.... +..+-..|+|.+ |..|.... +.|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHH
Confidence 44899998742 345666788887 88887653 36888875
No 82
>PHA03096 p28-like protein; Provisional
Probab=70.70 E-value=1.6 Score=40.11 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=24.1
Q ss_pred cccccccccc--------cceEEeCCCCcccchhhHhcC
Q 024334 220 DLCVICLEQE--------YNAVFVPCGHMCCCIICSWHL 250 (269)
Q Consensus 220 ~~C~IC~~~~--------~~~v~lpCgH~~~C~~C~~~l 250 (269)
..|-||+++. +..++-.|.|.+ |-.|...|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHH
Confidence 4699999864 345667899999 99999876
No 83
>PLN02189 cellulose synthase
Probab=68.38 E-value=3.2 Score=44.35 Aligned_cols=44 Identities=30% Similarity=0.705 Sum_probs=31.3
Q ss_pred cccccccccc----ccceEEeCCCC--cccchhhHhcC-----CCCccccccccc
Q 024334 219 PDLCVICLEQ----EYNAVFVPCGH--MCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~----~~~~v~lpCgH--~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
...|.||-+. ...-.|+.|.- ...|..|+.-- +.||.|++...+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 4589999987 33346777652 22599998543 689999988764
No 84
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=66.97 E-value=1.5 Score=40.49 Aligned_cols=41 Identities=34% Similarity=0.714 Sum_probs=29.1
Q ss_pred ccccccccccc---ceEEeCCCCcccchhhHhcC---------------------------CCCcccccccc
Q 024334 220 DLCVICLEQEY---NAVFVPCGHMCCCIICSWHL---------------------------TNCPLCRRRID 261 (269)
Q Consensus 220 ~~C~IC~~~~~---~~v~lpCgH~~~C~~C~~~l---------------------------~~CPiCR~~I~ 261 (269)
..|+||+-... ..+.++|-|.+. ..|..+. ..||+||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H-~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMH-FACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 36888886543 367789999984 4675432 26999998874
No 85
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=66.09 E-value=4.1 Score=30.31 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=29.0
Q ss_pred ccccccc---cc--cceEEeCCCCcccchhhHhcC----CCCcccccccc
Q 024334 221 LCVICLE---QE--YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRID 261 (269)
Q Consensus 221 ~C~IC~~---~~--~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~ 261 (269)
.|+-|.. .. ..++.--|.|.| -.-|+.++ ..||+||++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence 5666665 22 224555899999 78999987 48999998754
No 86
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.15 E-value=50 Score=22.85 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=11.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 024334 169 IHYILQRKRRWELHRRVLAAAA 190 (269)
Q Consensus 169 ~r~~~~~r~~~~~~~~~~~~~~ 190 (269)
.++++.+++.+++++++++..+
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666654433
No 87
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=61.33 E-value=1.6 Score=32.09 Aligned_cols=40 Identities=25% Similarity=0.541 Sum_probs=26.1
Q ss_pred ccccccccccce--EEeCCCCcccchhhHhcC-------CCCcccccccc
Q 024334 221 LCVICLEQEYNA--VFVPCGHMCCCIICSWHL-------TNCPLCRRRID 261 (269)
Q Consensus 221 ~C~IC~~~~~~~--v~lpCgH~~~C~~C~~~l-------~~CPiCR~~I~ 261 (269)
.|+-|.-..-++ ++--|.|.+ -.-|+.++ ..||+||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence 344444333333 333689988 68898877 38999998653
No 88
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=61.09 E-value=2.4 Score=43.26 Aligned_cols=41 Identities=32% Similarity=0.782 Sum_probs=35.7
Q ss_pred ccccccccccceEEeCCCCcccchhhHhcC-------CCCccccccccc
Q 024334 221 LCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 262 (269)
Q Consensus 221 ~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-------~~CPiCR~~I~~ 262 (269)
.|.||.....+.+.+.|.|.+ |..|.... ..||+|+..+++
T Consensus 23 Ec~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 23 ECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred cCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence 699999999999999999999 89998765 379999977764
No 89
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=58.73 E-value=58 Score=24.59 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 024334 158 IFGTFLIAKRAIHYILQRKRRWELHR 183 (269)
Q Consensus 158 ~~Gv~ll~~~~~r~~~~~r~~~~~~~ 183 (269)
.+.+++++|..+|..+.+++..+++.
T Consensus 12 ~v~~~i~~y~~~k~~ka~~~~~kL~~ 37 (87)
T PF10883_consen 12 AVVALILAYLWWKVKKAKKQNAKLQK 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666655554444443
No 90
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=58.03 E-value=16 Score=27.17 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=2.5
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 024334 168 AIHYILQRKRRWELHRRV 185 (269)
Q Consensus 168 ~~r~~~~~r~~~~~~~~~ 185 (269)
.++.|++.++|++..+.+
T Consensus 26 v~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 26 VYIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp H------------CHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 344454544444444433
No 91
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=57.64 E-value=4 Score=37.91 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=36.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccce
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQV 263 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~~ 263 (269)
.-.|++|+++..-...++|||-..|..|.... ..|++|-..+.+.
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra 185 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRA 185 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhh
Confidence 45899999999999999999999999986544 4699998665543
No 92
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.02 E-value=4.4 Score=37.17 Aligned_cols=31 Identities=35% Similarity=0.759 Sum_probs=26.5
Q ss_pred ccccccccccccceEEeCCC----CcccchhhHhcC
Q 024334 219 PDLCVICLEQEYNAVFVPCG----HMCCCIICSWHL 250 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCg----H~~~C~~C~~~l 250 (269)
...|.+|.++--+.-|+-|- |-| |+.|+...
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSRes 302 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRES 302 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccce-ecccCHHH
Confidence 35899999999999999995 888 99998753
No 93
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=56.88 E-value=7.4 Score=36.26 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=23.4
Q ss_pred ccceEEeCCCCcccc--hhhHhcC----CCCccccccccceEEcc
Q 024334 229 EYNAVFVPCGHMCCC--IICSWHL----TNCPLCRRRIDQVVRTF 267 (269)
Q Consensus 229 ~~~~v~lpCgH~~~C--~~C~~~l----~~CPiCR~~I~~~v~~f 267 (269)
..-.+++.|||+--- +.|...- .+||+||..=. ++++|
T Consensus 314 ~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp-~V~L~ 357 (429)
T KOG3842|consen 314 KQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGP-YVPLW 357 (429)
T ss_pred cCCeEEEeccccccccccccccccCcccCcCCeeeeecc-eeeee
Confidence 345899999998632 2232221 48999997433 55553
No 94
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=55.69 E-value=2.3 Score=38.87 Aligned_cols=46 Identities=30% Similarity=0.631 Sum_probs=34.6
Q ss_pred cccccccc----ccceEEeCCCCcccchhhHhcC----CCCccccccccceEEccc
Q 024334 221 LCVICLEQ----EYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFR 268 (269)
Q Consensus 221 ~C~IC~~~----~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~~f~ 268 (269)
-|++|.+. ...+..++|||.-- ..|...+ -+||+|-. +.....+|+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~~~ 213 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHYFR 213 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHHHH
Confidence 39999865 45677889999884 7787766 38999998 666555554
No 95
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=54.59 E-value=34 Score=22.16 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024334 156 LTIFGTFLIAKRAIHYILQRKR 177 (269)
Q Consensus 156 ~~~~Gv~ll~~~~~r~~~~~r~ 177 (269)
.+++|+.++....+|.|+.|++
T Consensus 17 Vglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777765443
No 96
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=52.29 E-value=12 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=29.6
Q ss_pred cccccccccccccceEEeCCCCcc----cchhhHhcC------CCCcccccccc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMC----CCIICSWHL------TNCPLCRRRID 261 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~----~C~~C~~~l------~~CPiCR~~I~ 261 (269)
.+..|-||++..... ..||.-.. .-.+|..+| ..|++|+.+..
T Consensus 7 ~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 355899999887543 34765322 235688776 48999998874
No 97
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=52.23 E-value=7.4 Score=23.64 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=16.4
Q ss_pred CCCCcccchhhHhcCCCCccccccccceEE
Q 024334 236 PCGHMCCCIICSWHLTNCPLCRRRIDQVVR 265 (269)
Q Consensus 236 pCgH~~~C~~C~~~l~~CPiCR~~I~~~v~ 265 (269)
.|||+..= ...-..||+|..+-..+.+
T Consensus 6 ~CGy~y~~---~~~~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 6 VCGYIYDG---EEAPWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCCCEECC---CcCCCcCcCCCCcHHHcEE
Confidence 46666520 1133589999987766654
No 98
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=50.62 E-value=9.7 Score=34.79 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=24.2
Q ss_pred ccccccccccccceEEeCC---C--CcccchhhHhcC----CCCccccccccceEEcc
Q 024334 219 PDLCVICLEQEYNAVFVPC---G--HMCCCIICSWHL----TNCPLCRRRIDQVVRTF 267 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpC---g--H~~~C~~C~~~l----~~CPiCR~~I~~~v~~f 267 (269)
...|+||-+.+.-.++..= | |+. |.-|...| .+||.|-..-......|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~-Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLH-CSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEE-ETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEE-cCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4689999999988888765 3 444 99999888 48999987765554443
No 99
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=50.60 E-value=81 Score=21.74 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024334 147 RWYKYASFGLTIFGTFLIAKRAIHYILQRKRR 178 (269)
Q Consensus 147 r~~~~l~iv~~~~Gv~ll~~~~~r~~~~~r~~ 178 (269)
|...+..+++.+.+..++.+..+.++...|++
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~ 46 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFKYNRRR 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566777777778888888777654443
No 100
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.54 E-value=7.8 Score=37.02 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=30.0
Q ss_pred ccccccccccccc---eEEeCCCCcccchhhHhcCC-------CCccccccc
Q 024334 219 PDLCVICLEQEYN---AVFVPCGHMCCCIICSWHLT-------NCPLCRRRI 260 (269)
Q Consensus 219 ~~~C~IC~~~~~~---~v~lpCgH~~~C~~C~~~l~-------~CPiCR~~I 260 (269)
-..|+|=.+.-.+ ++-++|||+. |.+=..++. +||.|....
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4578887654433 6778999998 888777761 799998654
No 101
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=50.29 E-value=7.5 Score=30.34 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=21.5
Q ss_pred eEEeCCCCcccchhhHhcC----CCCcccccc
Q 024334 232 AVFVPCGHMCCCIICSWHL----TNCPLCRRR 259 (269)
Q Consensus 232 ~v~lpCgH~~~C~~C~~~l----~~CPiCR~~ 259 (269)
++.-.|.|.| -.-|+.++ ..||+|.+.
T Consensus 76 VaWG~CNHaF-H~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 76 VAWGVCNHAF-HFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred EEeeecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence 3445899999 68899887 589999875
No 102
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=50.18 E-value=10 Score=25.40 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=16.0
Q ss_pred ccccccccccceE-EeCCCCcccchhhHhc--------CCCCcccccc
Q 024334 221 LCVICLEQEYNAV-FVPCGHMCCCIICSWH--------LTNCPLCRRR 259 (269)
Q Consensus 221 ~C~IC~~~~~~~v-~lpCgH~~~C~~C~~~--------l~~CPiCR~~ 259 (269)
.|++...+-...+ -..|.|.- |.+=..- .++||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 5777776665543 34799996 5543211 1589999864
No 103
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=50.09 E-value=3.8 Score=39.18 Aligned_cols=43 Identities=26% Similarity=0.630 Sum_probs=32.8
Q ss_pred cccccccccc----cccceEEeCCCCcccchhhHhcC------CCCcccccccc
Q 024334 218 MPDLCVICLE----QEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRID 261 (269)
Q Consensus 218 ~~~~C~IC~~----~~~~~v~lpCgH~~~C~~C~~~l------~~CPiCR~~I~ 261 (269)
..--|-.|-+ ++.+.-.+||-|.+ -..|...+ ..||-||.-+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence 3457888875 45667788999999 78999854 58999995443
No 104
>PRK00523 hypothetical protein; Provisional
Probab=48.17 E-value=65 Score=23.46 Aligned_cols=28 Identities=11% Similarity=-0.086 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024334 147 RWYKYASFGLTIFGTFLIAKRAIHYILQ 174 (269)
Q Consensus 147 r~~~~l~iv~~~~Gv~ll~~~~~r~~~~ 174 (269)
.+|..+.++.+++|++.-++.+++++++
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777777754
No 105
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=47.92 E-value=6.1 Score=37.85 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=0.0
Q ss_pred cceEEeCCCCcccchh--hHh----cCCCCcccccc
Q 024334 230 YNAVFVPCGHMCCCII--CSW----HLTNCPLCRRR 259 (269)
Q Consensus 230 ~~~v~lpCgH~~~C~~--C~~----~l~~CPiCR~~ 259 (269)
.-.|++.|||+.--.. ... ....||+||+.
T Consensus 302 qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 302 QPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------
T ss_pred CceeeccccceeeecccccccccccccccCCCcccc
Confidence 4579999999863221 100 13589999974
No 106
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.75 E-value=25 Score=36.90 Aligned_cols=47 Identities=23% Similarity=0.457 Sum_probs=35.0
Q ss_pred ccccccccc-ccceEEeCCCCcccchhhHhc-CCCCccccccccceEEcc
Q 024334 220 DLCVICLEQ-EYNAVFVPCGHMCCCIICSWH-LTNCPLCRRRIDQVVRTF 267 (269)
Q Consensus 220 ~~C~IC~~~-~~~~v~lpCgH~~~C~~C~~~-l~~CPiCR~~I~~~v~~f 267 (269)
..|-.|-.. .--+|..-|||.+ -..|... ...||-|+....++++.+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsy-HqhC~e~~~~~CP~C~~e~~~~m~l~ 889 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSY-HQHCLEDKEDKCPKCLPELRGVMDLK 889 (933)
T ss_pred eeecccCCccccceeeeecccHH-HHHhhccCcccCCccchhhhhhHHHH
Confidence 479999754 3446777999999 6888874 479999998766665544
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.63 E-value=7.5 Score=35.81 Aligned_cols=23 Identities=30% Similarity=0.979 Sum_probs=16.7
Q ss_pred CCCcccchhhHhcC-----------------CCCccccccc
Q 024334 237 CGHMCCCIICSWHL-----------------TNCPLCRRRI 260 (269)
Q Consensus 237 CgH~~~C~~C~~~l-----------------~~CPiCR~~I 260 (269)
|..++ |.+|..++ ..||+||+.+
T Consensus 325 crp~w-c~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLW-CRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHH-HHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 44555 78887765 2899999865
No 108
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.10 E-value=18 Score=32.65 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=30.8
Q ss_pred cccccccccc----ccccceEEeCCCCcccchhhHhcC--CCCccccccccc
Q 024334 217 VMPDLCVICL----EQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~----~~~~~~v~lpCgH~~~C~~C~~~l--~~CPiCR~~I~~ 262 (269)
.....|+|=- +..+-+++.+|||++. ..=...+ ..|++|.+.+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~S-erAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFS-ERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceecc-HHHHHHhhhccccccCCcccc
Confidence 3456888765 3456688899999983 3333333 589999988754
No 109
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=40.91 E-value=1.3e+02 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=18.1
Q ss_pred eeCChHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 024334 131 SPKTIDELIENLGKWARWYKYASFGLTIFGTFL 163 (269)
Q Consensus 131 S~~s~d~Li~~l~~~ar~~~~l~iv~~~~Gv~l 163 (269)
+..+.+++...+......+.+.+++.+++..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~G~~i~~~v~~~i 134 (154)
T PF09835_consen 102 SLMHWSDLLESLWEFGLPFLLGSLILGIVLGII 134 (154)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666556655555556666665544433
No 110
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=40.50 E-value=16 Score=38.24 Aligned_cols=44 Identities=20% Similarity=0.487 Sum_probs=32.9
Q ss_pred ccccccccccc--ccceEEeCCCCcc----cchhhHhcC------CCCcccccccc
Q 024334 218 MPDLCVICLEQ--EYNAVFVPCGHMC----CCIICSWHL------TNCPLCRRRID 261 (269)
Q Consensus 218 ~~~~C~IC~~~--~~~~v~lpCgH~~----~C~~C~~~l------~~CPiCR~~I~ 261 (269)
++..|.||... +-+..|.||...- .-.+|...| ++|-+|..++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 34689999965 5678999998543 246788776 58999998764
No 111
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=39.44 E-value=5.7 Score=22.97 Aligned_cols=9 Identities=44% Similarity=1.409 Sum_probs=7.3
Q ss_pred CCccccccc
Q 024334 252 NCPLCRRRI 260 (269)
Q Consensus 252 ~CPiCR~~I 260 (269)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 689998776
No 112
>PRK01844 hypothetical protein; Provisional
Probab=39.24 E-value=92 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024334 150 KYASFGLTIFGTFLIAKRAIHYILQ 174 (269)
Q Consensus 150 ~~l~iv~~~~Gv~ll~~~~~r~~~~ 174 (269)
..+.++.+++|+++-++.+++++++
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777767777777644
No 113
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.75 E-value=13 Score=22.80 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=16.3
Q ss_pred CCCCcccchhhHhcCCCCccccccccceEE
Q 024334 236 PCGHMCCCIICSWHLTNCPLCRRRIDQVVR 265 (269)
Q Consensus 236 pCgH~~~C~~C~~~l~~CPiCR~~I~~~v~ 265 (269)
.|||... . ...-..||+|..+-..+.+
T Consensus 7 ~CG~i~~-g--~~~p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 7 VCGYIHE-G--EEAPEKCPICGAPKEKFEE 33 (34)
T ss_pred CCCCEeE-C--CcCCCcCcCCCCchHHcEE
Confidence 4676642 0 1122589999988766654
No 114
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=38.74 E-value=21 Score=33.36 Aligned_cols=46 Identities=33% Similarity=0.895 Sum_probs=33.5
Q ss_pred ccccccccccc--cceEEe--CCCCcccchhhHhcC----CCCccccccccceEE
Q 024334 219 PDLCVICLEQE--YNAVFV--PCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 265 (269)
Q Consensus 219 ~~~C~IC~~~~--~~~v~l--pCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~ 265 (269)
+..|++|.+-. .+..++ ||||. .|..|.... ..||.||.+...-..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t~ 302 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNTK 302 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCcc
Confidence 46899999843 333444 68898 499998876 499999987765443
No 115
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=36.99 E-value=43 Score=29.46 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=25.2
Q ss_pred CCCCCCeEEeeCChHHHHHhHhHHHHHHHHHHHHHHH
Q 024334 122 RPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTI 158 (269)
Q Consensus 122 ~P~~g~f~lS~~s~d~Li~~l~~~ar~~~~l~iv~~~ 158 (269)
++.+.||+-....+++.+.+....++.|+++++++++
T Consensus 14 ~~~~~~y~~a~~~weer~~~~~~~~~~w~~va~~~l~ 50 (228)
T PRK13872 14 PEPETPYQRAAQVWDERIGSARVQARNWRLMAFGCLA 50 (228)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444588888888888888887777767644544333
No 116
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=36.96 E-value=66 Score=28.75 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024334 148 WYKYASFGLTIFGTFLIAKRAIHYILQRKRR 178 (269)
Q Consensus 148 ~~~~l~iv~~~~Gv~ll~~~~~r~~~~~r~~ 178 (269)
...|++.+++++|.+++.+..+.|++-+|.+
T Consensus 192 ~~~wla~~Lm~~G~fI~irsi~dY~rVKR~E 222 (233)
T PF10176_consen 192 SNPWLAYILMAFGWFIFIRSIIDYWRVKRME 222 (233)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777788889999988888888665543
No 117
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=36.84 E-value=7.3 Score=29.76 Aligned_cols=37 Identities=24% Similarity=0.670 Sum_probs=28.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcCCCCcccccc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRR 259 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~ 259 (269)
.+..|+.|..+...-.+ |.. |..|+..+..|+-|..+
T Consensus 54 ~p~kC~~C~qktVk~AY----h~i-C~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 54 QPKKCNKCQQKTVKHAY----HVI-CDPCAKELKVCAKCGKP 90 (92)
T ss_pred CCccccccccchHHHHH----HHH-HHHHHHhhccCcccCCC
Confidence 34579999877655443 665 99999999999999765
No 118
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=36.38 E-value=18 Score=34.20 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=12.7
Q ss_pred cccccccccccccceEE
Q 024334 218 MPDLCVICLEQEYNAVF 234 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~ 234 (269)
...+|++|-++..-.-+
T Consensus 14 l~ElCPVCGDkVSGYHY 30 (475)
T KOG4218|consen 14 LGELCPVCGDKVSGYHY 30 (475)
T ss_pred cccccccccCcccccee
Confidence 45589999998876543
No 119
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.25 E-value=11 Score=36.06 Aligned_cols=31 Identities=29% Similarity=0.619 Sum_probs=21.2
Q ss_pred cccccccc-ccccc---eEEeCCCCcccchhhHhcC
Q 024334 219 PDLCVICL-EQEYN---AVFVPCGHMCCCIICSWHL 250 (269)
Q Consensus 219 ~~~C~IC~-~~~~~---~v~lpCgH~~~C~~C~~~l 250 (269)
...|.||+ +.+.. ....-|+|.+ |.+|..+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~~ 180 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQH 180 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchh-hhHHhHHH
Confidence 45799999 32221 2245799999 99998753
No 120
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=36.14 E-value=8.5 Score=27.88 Aligned_cols=38 Identities=24% Similarity=0.630 Sum_probs=18.9
Q ss_pred ccccccccccceEEeCCCCcccchhhHhcC---CCCccccccccce
Q 024334 221 LCVICLEQEYNAVFVPCGHMCCCIICSWHL---TNCPLCRRRIDQV 263 (269)
Q Consensus 221 ~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l---~~CPiCR~~I~~~ 263 (269)
.|+.|...-. -.. ||.. |..|.... ..||-|.++++.+
T Consensus 3 ~CP~C~~~L~---~~~-~~~~-C~~C~~~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 3 TCPKCQQELE---WQG-GHYH-CEACQKDYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp B-SSS-SBEE---EET-TEEE-ETTT--EEEEEEE-TTT-SB-EEE
T ss_pred cCCCCCCccE---EeC-CEEE-CccccccceecccCCCcccHHHHH
Confidence 6888876511 111 4444 88887776 4788888887654
No 121
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.97 E-value=18 Score=29.02 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=13.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024334 141 NLGKWARWYKYASFGLTIFGTFLIAKR 167 (269)
Q Consensus 141 ~l~~~ar~~~~l~iv~~~~Gv~ll~~~ 167 (269)
++..-+..+-++++++|++|++++..+
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHHHHHHHHHHHH
Confidence 333344445555666666666554433
No 122
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=34.25 E-value=1.8e+02 Score=21.99 Aligned_cols=52 Identities=21% Similarity=0.200 Sum_probs=24.0
Q ss_pred eEEeCCCCCCeEEeeCChHHHHHhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024334 118 VRIQRPHKGPFYVSPKTIDELIENLGKWAR-WYKYASFGLTIFGTFLIAKRAIHYILQRK 176 (269)
Q Consensus 118 ~~iq~P~~g~f~lS~~s~d~Li~~l~~~ar-~~~~l~iv~~~~Gv~ll~~~~~r~~~~~r 176 (269)
+.+++|+.| ...+.-+.+ ....+ ...++++++...+.+......+..|.+-|
T Consensus 2 P~~e~Ps~g----~~~~~~~~i---~~y~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir 54 (87)
T PF11190_consen 2 PTVEPPSSG----GGGGIMETI---KGYAKDGVLLLGLVLAAAAFIVVAKAAISTYNEIR 54 (87)
T ss_pred CCCCCCCCC----CCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788877 333333333 33221 12233344444444445555666665544
No 123
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=34.14 E-value=50 Score=28.91 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.6
Q ss_pred CCCCCCeEEeeCChHHHHHhHhHHHHHHHHHHHHHHHH
Q 024334 122 RPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIF 159 (269)
Q Consensus 122 ~P~~g~f~lS~~s~d~Li~~l~~~ar~~~~l~iv~~~~ 159 (269)
++...||+-....+++.+.+....++.|++++++.+++
T Consensus 5 ~~~~~py~~a~~~w~er~g~~~~~~~~W~~~a~~~l~~ 42 (220)
T PRK13836 5 TPPDNPYLAARQEWNERYGSYVKAAAAWRIVGILGLTM 42 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445888888888998888888889999887644443
No 124
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=34.13 E-value=74 Score=21.50 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=24.7
Q ss_pred eeecccCCCceEEEeEEEEECCCCCeEEeCCC
Q 024334 93 RIERLLPTGTSLTVVGEAVKDDIGTVRIQRPH 124 (269)
Q Consensus 93 ~~E~vL~~G~~lt~vGel~~d~~g~~~iq~P~ 124 (269)
.....+++|+.+.+.|.+..- .|.+.|..|.
T Consensus 41 ~~~~~~~~G~~~~v~Gkv~~~-~~~~qi~~P~ 71 (75)
T cd04488 41 YLKKQLPPGTRVRVSGKVKRF-RGGLQIVHPE 71 (75)
T ss_pred HHHhcCCCCCEEEEEEEEeec-CCeeEEeCCc
Confidence 345679999999999997543 6788888886
No 125
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=33.00 E-value=17 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=17.5
Q ss_pred CCCCcccchhhHhcCCCCccccccccceEE
Q 024334 236 PCGHMCCCIICSWHLTNCPLCRRRIDQVVR 265 (269)
Q Consensus 236 pCgH~~~C~~C~~~l~~CPiCR~~I~~~v~ 265 (269)
-|||.+ .. ..-..||+|..+-..+..
T Consensus 139 vCGy~~--~g--e~P~~CPiCga~k~~F~~ 164 (166)
T COG1592 139 VCGYTH--EG--EAPEVCPICGAPKEKFEK 164 (166)
T ss_pred CCCCcc--cC--CCCCcCCCCCChHHHhhc
Confidence 358875 34 344599999988766543
No 126
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.63 E-value=16 Score=24.59 Aligned_cols=10 Identities=60% Similarity=1.434 Sum_probs=3.3
Q ss_pred CCcccccccc
Q 024334 252 NCPLCRRRID 261 (269)
Q Consensus 252 ~CPiCR~~I~ 261 (269)
.||+|.++++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 4666655543
No 127
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=32.62 E-value=17 Score=27.78 Aligned_cols=34 Identities=29% Similarity=0.712 Sum_probs=24.1
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC--CCCccccc
Q 024334 220 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRR 258 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l--~~CPiCR~ 258 (269)
..|+||-+-. -||.-+-.|.+|.-.- .+|.+|..
T Consensus 28 gkC~ICDS~V-----RP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 28 GKCVICDSYV-----RPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred Cccccccccc-----ccceeeeeehhcCCccccCceEEecC
Confidence 4799996544 4666666789997544 58888886
No 128
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.96 E-value=85 Score=25.21 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024334 151 YASFGLTIFGTFLIAKRAIHYILQRKR 177 (269)
Q Consensus 151 ~l~iv~~~~Gv~ll~~~~~r~~~~~r~ 177 (269)
...|++++++.+++...++-|+.+|++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777776555555455555544443
No 129
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.90 E-value=20 Score=20.79 Aligned_cols=16 Identities=31% Similarity=0.825 Sum_probs=8.5
Q ss_pred chhhHhcC----CCCccccc
Q 024334 243 CIICSWHL----TNCPLCRR 258 (269)
Q Consensus 243 C~~C~~~l----~~CPiCR~ 258 (269)
|.+|...+ ..||.|.=
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CCCCcCCchhhcCcCCCCCC
Confidence 45555444 36666643
No 130
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=31.74 E-value=1.3e+02 Score=24.43 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 024334 163 LIAKRAIHYILQ 174 (269)
Q Consensus 163 ll~~~~~r~~~~ 174 (269)
++.+..+|++++
T Consensus 36 ~~~~~~~r~~~~ 47 (146)
T PF14316_consen 36 LLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHc
Confidence 334444444433
No 131
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=30.74 E-value=1.2e+02 Score=23.40 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 024334 147 RWYKYASFGLT 157 (269)
Q Consensus 147 r~~~~l~iv~~ 157 (269)
.||+|+.++++
T Consensus 21 ~w~FWlv~~li 31 (102)
T PF11669_consen 21 LWYFWLVWVLI 31 (102)
T ss_pred HHHHHHHHHHH
Confidence 46666643443
No 132
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.67 E-value=23 Score=32.86 Aligned_cols=42 Identities=19% Similarity=0.499 Sum_probs=30.2
Q ss_pred cccccccccccccceEEeC----CCCcc-cchhhHhcC----CCCcccccc
Q 024334 218 MPDLCVICLEQEYNAVFVP----CGHMC-CCIICSWHL----TNCPLCRRR 259 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lp----CgH~~-~C~~C~~~l----~~CPiCR~~ 259 (269)
....|+||-+.+.-.++.. =|+.+ .|.-|...| .+||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3458999999997655433 34322 489998888 389999875
No 133
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=30.58 E-value=19 Score=37.56 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=29.1
Q ss_pred cccccccccc----cceEEeCCCCcccchhhHhcC----------CCCccccccccc
Q 024334 220 DLCVICLEQE----YNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~----~~~v~lpCgH~~~C~~C~~~l----------~~CPiCR~~I~~ 262 (269)
..|.+|+..+ ..+.+-.|+|.. |..|+..+ ..|+.|..-|..
T Consensus 100 ~~C~~E~S~~~ds~~i~P~~~~~~~~-CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 100 PVCEKEHSPDVDSSNICPVQTHVENQ-CPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred chhheecCCcccccCcCchhhhhhhh-hhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 3677777663 334444599999 99999876 378998865544
No 134
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=30.14 E-value=30 Score=32.23 Aligned_cols=41 Identities=20% Similarity=0.500 Sum_probs=29.7
Q ss_pred cccccccccccccceEEeC---CCCcc-cchhhHhcC----CCCccccc
Q 024334 218 MPDLCVICLEQEYNAVFVP---CGHMC-CCIICSWHL----TNCPLCRR 258 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lp---CgH~~-~C~~C~~~l----~~CPiCR~ 258 (269)
....|+||-+.|.-.++.. =|+.+ .|.-|...| .+||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4569999999997665432 34332 388998888 38999986
No 135
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=30.00 E-value=31 Score=22.69 Aligned_cols=35 Identities=31% Similarity=0.708 Sum_probs=19.6
Q ss_pred cccccccccc--eEEeCCCCcc----cchhhHhcC------CCCccc
Q 024334 222 CVICLEQEYN--AVFVPCGHMC----CCIICSWHL------TNCPLC 256 (269)
Q Consensus 222 C~IC~~~~~~--~v~lpCgH~~----~C~~C~~~l------~~CPiC 256 (269)
|-||++...+ .++.||+-.- .-..|..++ .+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788876433 5677987322 245677766 468877
No 136
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.95 E-value=22 Score=36.95 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=13.0
Q ss_pred CCCCcccchhhHhcC
Q 024334 236 PCGHMCCCIICSWHL 250 (269)
Q Consensus 236 pCgH~~~C~~C~~~l 250 (269)
.|||+..|..|...+
T Consensus 440 ~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 440 DCGYIAECPNCDSPL 454 (730)
T ss_pred cCCCcccCCCCCcce
Confidence 799999999998765
No 137
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.75 E-value=22 Score=31.62 Aligned_cols=20 Identities=30% Similarity=0.908 Sum_probs=16.4
Q ss_pred cchhhHhcC----CCCcccccccc
Q 024334 242 CCIICSWHL----TNCPLCRRRID 261 (269)
Q Consensus 242 ~C~~C~~~l----~~CPiCR~~I~ 261 (269)
.|-.|-+.+ +.||+|.+.-.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 699999877 79999997643
No 138
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.80 E-value=20 Score=34.82 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=26.2
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhHhcC
Q 024334 219 PDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL 250 (269)
Q Consensus 219 ~~~C~IC~~~~~~-~v~lpCgH~~~C~~C~~~l 250 (269)
...|-||.+.... ++.++|||.+ |..|....
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~-c~~cw~~y 101 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPF-CPPCWTGY 101 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHH-HHHHHHHH
Confidence 3579999998885 8888999999 99998763
No 139
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=27.98 E-value=25 Score=25.99 Aligned_cols=43 Identities=30% Similarity=0.647 Sum_probs=15.8
Q ss_pred ccccccccccccc----eEEeCC---CCcccchhhHhc-----CCCCccccccccc
Q 024334 219 PDLCVICLEQEYN----AVFVPC---GHMCCCIICSWH-----LTNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~----~v~lpC---gH~~~C~~C~~~-----l~~CPiCR~~I~~ 262 (269)
...|.||-+..-. -+|+-| +--+ |..|+.- .+.||.|+.+..+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCccc
Confidence 4589999875422 245544 4433 8888753 2689999987654
No 140
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=27.88 E-value=75 Score=28.41 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=24.6
Q ss_pred CCCCCCeEEeeCChHHHHHhHhHHHHHHHHHHHHHHH
Q 024334 122 RPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTI 158 (269)
Q Consensus 122 ~P~~g~f~lS~~s~d~Li~~l~~~ar~~~~l~iv~~~ 158 (269)
++...||+-....+++.+.+....++.|++++++.++
T Consensus 28 ~~~~~~Y~~a~~~we~r~~~~~~~~~~w~v~a~~~~~ 64 (250)
T PRK13887 28 GETENPYLNARRTWNDHVGGVVSQRQTWQVVGILSLL 64 (250)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444588888888888777777777777765544333
No 141
>PLN02400 cellulose synthase
Probab=26.04 E-value=63 Score=35.10 Aligned_cols=45 Identities=29% Similarity=0.595 Sum_probs=29.8
Q ss_pred cccccccccccccc----eEEeCCCCc--ccchhhHhcC-----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYN----AVFVPCGHM--CCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~----~v~lpCgH~--~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
..+.|.||-+.--- =.|+-|... .+|..|+.-- +.||.|++...+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 34589999986321 245555432 1499998532 689999988764
No 142
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=25.55 E-value=3.9e+02 Score=22.15 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=22.8
Q ss_pred CeEEeeCChHHHHHhHhHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 024334 127 PFYVSPKTIDELIENLGKWARWYK-YASFGLTIFGTFLIAKRAIH 170 (269)
Q Consensus 127 ~f~lS~~s~d~Li~~l~~~ar~~~-~l~iv~~~~Gv~ll~~~~~r 170 (269)
|=++| .+++....+..|... +++|+++++|.++..+...+
T Consensus 76 Pe~Vs----~e~l~~arnk~RIkv~~~Mi~lTiiGc~~mv~sGK~ 116 (146)
T PF06388_consen 76 PETVS----FEMLDAARNKARIKVCYIMIALTIIGCIAMVISGKR 116 (146)
T ss_pred cCccC----HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666 345555555554433 56677778887765444433
No 143
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=25.52 E-value=49 Score=22.85 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=22.4
Q ss_pred CeEEeeCChHHHHHhHhHHH-HHHHHHHHHHHHHHHHHH
Q 024334 127 PFYVSPKTIDELIENLGKWA-RWYKYASFGLTIFGTFLI 164 (269)
Q Consensus 127 ~f~lS~~s~d~Li~~l~~~a-r~~~~l~iv~~~~Gv~ll 164 (269)
.|++.+.....+..++.... +..+..+.+..++|++++
T Consensus 15 ~~~l~P~~~r~~l~~l~~~p~~~lR~~Gl~~~~~Gl~ll 53 (57)
T PF09838_consen 15 LPFLAPERWRRMLRQLAQLPDRQLRRIGLVSMVIGLVLL 53 (57)
T ss_pred HHHhCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 56677666666666554443 445556666666666554
No 144
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.50 E-value=41 Score=29.99 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=32.1
Q ss_pred ccccccc--cccceEEeCCCCcccchhhHhcC------------CCCcccccccc
Q 024334 221 LCVICLE--QEYNAVFVPCGHMCCCIICSWHL------------TNCPLCRRRID 261 (269)
Q Consensus 221 ~C~IC~~--~~~~~v~lpCgH~~~C~~C~~~l------------~~CPiCR~~I~ 261 (269)
-|..|.. ...+++=+.|=|++ -+.|.... -.||-|.+.|-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlf-HW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLF-HWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhH-HHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 5888875 45778888999999 79998654 28999998874
No 145
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=25.33 E-value=2.4e+02 Score=22.67 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.0
Q ss_pred eEEeeCChHHHHH
Q 024334 128 FYVSPKTIDELIE 140 (269)
Q Consensus 128 f~lS~~s~d~Li~ 140 (269)
..+.+.+.+.-++
T Consensus 61 ~~i~pL~e~~Aie 73 (134)
T PF07047_consen 61 RKIRPLNEEKAIE 73 (134)
T ss_pred CcCCCCCHHHHHH
Confidence 3444455544443
No 146
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=25.07 E-value=7e+02 Score=24.93 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=21.2
Q ss_pred ceEEEeEEEEECCCCCeEEeCCCCC-CeEEee----CChHHHHHhHhHH
Q 024334 102 TSLTVVGEAVKDDIGTVRIQRPHKG-PFYVSP----KTIDELIENLGKW 145 (269)
Q Consensus 102 ~~lt~vGel~~d~~g~~~iq~P~~g-~f~lS~----~s~d~Li~~l~~~ 145 (269)
+.+++-|.|+.- +...++....+ .-++.+ -++.++++.+-+|
T Consensus 416 ~~f~I~G~L~~~--~~f~~r~~~~~~S~~vn~~~~~~~~~~w~sgl~~~ 462 (507)
T PF07245_consen 416 KEFHIKGTLIYL--GPFDDRNYTGGSSIVVNPSEGSWDFFNWLSGLISW 462 (507)
T ss_pred eEEEEEEEEEec--cccccccccCceeeEECCccCccChHHHHhHHHHH
Confidence 357777887443 33444444444 334444 2345555555444
No 147
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=24.49 E-value=33 Score=23.05 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=10.2
Q ss_pred CCCccccccccceEE
Q 024334 251 TNCPLCRRRIDQVVR 265 (269)
Q Consensus 251 ~~CPiCR~~I~~~v~ 265 (269)
..||+|..+-..+..
T Consensus 35 w~CP~C~a~K~~F~~ 49 (50)
T cd00730 35 WVCPVCGAGKDDFEP 49 (50)
T ss_pred CCCCCCCCcHHHcEe
Confidence 378888877666554
No 148
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=24.03 E-value=35 Score=23.41 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=10.7
Q ss_pred CCCccccccccce
Q 024334 251 TNCPLCRRRIDQV 263 (269)
Q Consensus 251 ~~CPiCR~~I~~~ 263 (269)
.+|.+|+++|...
T Consensus 2 ~~CvVCKqpi~~a 14 (54)
T PF10886_consen 2 EICVVCKQPIDDA 14 (54)
T ss_pred CeeeeeCCccCcc
Confidence 4799999999874
No 149
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=23.97 E-value=8.4 Score=26.27 Aligned_cols=7 Identities=43% Similarity=0.914 Sum_probs=2.4
Q ss_pred ccccccc
Q 024334 220 DLCVICL 226 (269)
Q Consensus 220 ~~C~IC~ 226 (269)
..|++|.
T Consensus 25 atCP~C~ 31 (54)
T PF09237_consen 25 ATCPICG 31 (54)
T ss_dssp EE-TTT-
T ss_pred CCCCcch
Confidence 3455553
No 150
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=23.62 E-value=86 Score=21.37 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.0
Q ss_pred eeecccCCCceEEEeEEEEECCCCCeEEeCC
Q 024334 93 RIERLLPTGTSLTVVGEAVKDDIGTVRIQRP 123 (269)
Q Consensus 93 ~~E~vL~~G~~lt~vGel~~d~~g~~~iq~P 123 (269)
..-+.|++|+.+.+.|.+..++++.+.|..+
T Consensus 40 ~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~ 70 (75)
T PF01336_consen 40 RFREKLKEGDIVRVRGKVKRYNGGELELIVP 70 (75)
T ss_dssp HHHHTS-TTSEEEEEEEEEEETTSSEEEEEE
T ss_pred HHhhcCCCCeEEEEEEEEEEECCccEEEEEC
Confidence 3446688999999999987775554766543
No 151
>PF05439 JTB: Jumping translocation breakpoint protein (JTB); InterPro: IPR008657 This family contains several jumping translocation breakpoint proteins or JTBs. Jumping translocation (JT) is an unbalanced translocation that comprises amplified chromosomal segments jumping to various telomeres. JTB, located at 1q21, has been found to fuse with the telomeric repeats of acceptor telomeres in a case of JT. hJTB (Homo sapiens JTB) encodes a transmembrane protein that is highly conserved among divergent eukaryotic species. JT results in a hJTB truncation, which potentially produces an hJTB product devoid of the transmembrane domain. hJTB is located in a gene-rich region at 1q21, called EDC (Epidermal Differentiation Complex) []. JTB has also been implicated in prostatic carcinomas [].; GO: 0016021 integral to membrane; PDB: 2KJX_A.
Probab=23.21 E-value=27 Score=27.70 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 024334 145 WARWYKYASFGLTIFGTFLIAKRAIHYILQRKRRWELHR 183 (269)
Q Consensus 145 ~ar~~~~l~iv~~~~Gv~ll~~~~~r~~~~~r~~~~~~~ 183 (269)
...+|++-++.+++.-+..+...+++..++++...++++
T Consensus 74 ~~~Fw~Fe~~~l~i~l~s~~~v~~R~r~Ldr~~~~rv~r 112 (114)
T PF05439_consen 74 ERNFWKFEGFMLVIGLLSYLVVVLRQRQLDRRAYERVQR 112 (114)
T ss_dssp ---------------------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666655555444444455556666666665554444
No 152
>PHA03237 envelope glycoprotein M; Provisional
Probab=23.20 E-value=6.7e+02 Score=24.54 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=13.6
Q ss_pred chhhhHHHHhcccccchhhhh
Q 024334 10 CLSGAALYLLGRSSEMQSFLR 30 (269)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (269)
|++....+..+|-..+++|-+
T Consensus 181 ~lt~f~~~f~~~g~s~~~y~~ 201 (424)
T PHA03237 181 ALTFFYGYFCGRGVDSAQYAE 201 (424)
T ss_pred HHHHHHHHHHhcCcCHHHHHH
Confidence 566666666676666677655
No 153
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=23.18 E-value=89 Score=20.61 Aligned_cols=29 Identities=21% Similarity=0.618 Sum_probs=14.8
Q ss_pred CCeEEeCCCCC-CeEEeeCChHHHHHhHhHH
Q 024334 116 GTVRIQRPHKG-PFYVSPKTIDELIENLGKW 145 (269)
Q Consensus 116 g~~~iq~P~~g-~f~lS~~s~d~Li~~l~~~ 145 (269)
+.+.+++ .+| +|++|...-+.-+..+..|
T Consensus 6 ~ki~~~~-~~Gl~y~vT~~~s~~~L~k~~~w 35 (45)
T PF12123_consen 6 AKIIFQS-KDGLPYFVTDPLSDAELDKFTAW 35 (45)
T ss_dssp EEEEE-T--TS-EEEEE----HHHHHHHHHH
T ss_pred EEEEEec-CCCcEEEEeCCCCHHHHHHHHHH
Confidence 3455554 677 8999976666666655544
No 154
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.17 E-value=37 Score=33.62 Aligned_cols=15 Identities=40% Similarity=1.068 Sum_probs=9.3
Q ss_pred CCCCcccchhhHhcC
Q 024334 236 PCGHMCCCIICSWHL 250 (269)
Q Consensus 236 pCgH~~~C~~C~~~l 250 (269)
.|||...|..|...+
T Consensus 218 ~Cg~~~~C~~C~~~l 232 (505)
T TIGR00595 218 SCGYILCCPNCDVSL 232 (505)
T ss_pred hCcCccCCCCCCCce
Confidence 467776666666443
No 155
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.57 E-value=65 Score=34.11 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=20.3
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHhc
Q 024334 219 PDLCVICLEQ---EYNAVFVPCGHMCCCIICSWH 249 (269)
Q Consensus 219 ~~~C~IC~~~---~~~~v~lpCgH~~~C~~C~~~ 249 (269)
.+.|-+|.-. ..-.+| ||||.| -++|..+
T Consensus 817 ~d~C~~C~~~ll~~pF~vf-~CgH~F-H~~Cl~~ 848 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVF-PCGHCF-HRDCLIR 848 (911)
T ss_pred ccchHHhcchhhcCcceee-eccchH-HHHHHHH
Confidence 3478888753 333444 999999 7999754
No 156
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.55 E-value=33 Score=21.19 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=10.1
Q ss_pred CCCCccccccccce
Q 024334 250 LTNCPLCRRRIDQV 263 (269)
Q Consensus 250 l~~CPiCR~~I~~~ 263 (269)
...||.|...+.++
T Consensus 26 ~~~CP~Cg~~~~r~ 39 (41)
T smart00834 26 LATCPECGGDVRRL 39 (41)
T ss_pred CCCCCCCCCcceec
Confidence 35899999966543
No 157
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=22.42 E-value=3e+02 Score=19.67 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024334 148 WYKYASFGLTIFGTFLI 164 (269)
Q Consensus 148 ~~~~l~iv~~~~Gv~ll 164 (269)
.|.|++.+..++.++++
T Consensus 17 fyVWlA~~~tll~l~~l 33 (67)
T COG3114 17 FYVWLAVGMTLLPLAVL 33 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567666666555544
No 158
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.39 E-value=1.6e+02 Score=20.91 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024334 154 FGLTIFGTFLIAKRAIHYILQ 174 (269)
Q Consensus 154 iv~~~~Gv~ll~~~~~r~~~~ 174 (269)
++.+++|+++-++.+.+++.+
T Consensus 4 ilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555543
No 159
>PLN02436 cellulose synthase A
Probab=22.37 E-value=82 Score=34.24 Aligned_cols=45 Identities=27% Similarity=0.555 Sum_probs=31.0
Q ss_pred cccccccccccccc----eEEeCCCCc--ccchhhHhcC-----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYN----AVFVPCGHM--CCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~----~v~lpCgH~--~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
....|.||-+.--. =.|+.|..- ..|..|+.-- +.||.|++...+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 34589999987421 266666532 2599998543 589999988764
No 160
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=22.27 E-value=27 Score=22.62 Aligned_cols=21 Identities=33% Similarity=0.798 Sum_probs=13.6
Q ss_pred ccchhhHhcC--------CCCcccccccc
Q 024334 241 CCCIICSWHL--------TNCPLCRRRID 261 (269)
Q Consensus 241 ~~C~~C~~~l--------~~CPiCR~~I~ 261 (269)
+.|..|-..+ .+||.|..++.
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCeEE
Confidence 3466665443 47999987764
No 161
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=22.22 E-value=1.6e+02 Score=22.02 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 024334 166 KRAIHYILQRKRRWELHRRVL 186 (269)
Q Consensus 166 ~~~~r~~~~~r~~~~~~~~~~ 186 (269)
++.||..+++|+-.++-++..
T Consensus 27 ~ieYrk~~rqrkId~li~RIr 47 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDRLIERIR 47 (81)
T ss_dssp ------------CHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 444444433343333344443
No 162
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=22.07 E-value=41 Score=22.90 Aligned_cols=14 Identities=21% Similarity=0.802 Sum_probs=10.7
Q ss_pred CCCccccccccceE
Q 024334 251 TNCPLCRRRIDQVV 264 (269)
Q Consensus 251 ~~CPiCR~~I~~~v 264 (269)
..|++|+++|.+..
T Consensus 2 ~iCvvCK~Pi~~al 15 (53)
T PHA02610 2 KICVVCKQPIEKAL 15 (53)
T ss_pred ceeeeeCCchhhce
Confidence 46999999987643
No 163
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.95 E-value=33 Score=27.84 Aligned_cols=20 Identities=35% Similarity=0.924 Sum_probs=15.4
Q ss_pred chhhHhc-CCCCccccccccc
Q 024334 243 CIICSWH-LTNCPLCRRRIDQ 262 (269)
Q Consensus 243 C~~C~~~-l~~CPiCR~~I~~ 262 (269)
|..|-.. +..||+|..+|..
T Consensus 31 cskcgeati~qcp~csasirg 51 (160)
T COG4306 31 CSKCGEATITQCPICSASIRG 51 (160)
T ss_pred HhhhchHHHhcCCccCCcccc
Confidence 6777554 4799999999875
No 164
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=21.84 E-value=2.2e+02 Score=21.11 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=12.8
Q ss_pred HHHHHhHhHHH---HHHHHHHHHHHHHHHH
Q 024334 136 DELIENLGKWA---RWYKYASFGLTIFGTF 162 (269)
Q Consensus 136 d~Li~~l~~~a---r~~~~l~iv~~~~Gv~ 162 (269)
..|+..++... +++.+++++|+++.++
T Consensus 56 ~~ll~~l~r~~~~D~~li~~~~~~f~~~v~ 85 (92)
T PF03908_consen 56 RKLLKKLERRDKTDRILIFFAFLFFLLVVL 85 (92)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555555443 4444555544444333
No 165
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.78 E-value=84 Score=34.03 Aligned_cols=45 Identities=24% Similarity=0.487 Sum_probs=29.9
Q ss_pred cccccccccccccc----eEEeCCCCc--ccchhhHhcC-----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYN----AVFVPCGHM--CCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~----~v~lpCgH~--~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
....|.||-+.--. -.|+-|..- ..|..|+.-- +.||.|+++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 45589999986321 245555432 1499998532 689999988764
No 166
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=21.05 E-value=2.1e+02 Score=20.81 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=18.9
Q ss_pred eecccCCCceEEEeEEEEECCCCCeEEe
Q 024334 94 IERLLPTGTSLTVVGEAVKDDIGTVRIQ 121 (269)
Q Consensus 94 ~E~vL~~G~~lt~vGel~~d~~g~~~iq 121 (269)
....+++|+.+-+.|.+..- +|.+.|.
T Consensus 44 ~~~~~~~g~~v~v~G~v~~~-~g~~ql~ 70 (95)
T cd04478 44 EVEPIEEGTYVRVFGNLKSF-QGKKSIM 70 (95)
T ss_pred cccccccCCEEEEEEEEccc-CCeeEEE
Confidence 35568999999999996333 5655544
No 167
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=20.98 E-value=4e+02 Score=23.54 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=34.7
Q ss_pred CCceEEEeEEEEECCCCCeEEeCCCCC-C-eEEee--CChHHHHHhHhHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 024334 100 TGTSLTVVGEAVKDDIGTVRIQRPHKG-P-FYVSP--KTIDELIENLGKWAR----WYKYASFGLTIFGTFLIAKRA 168 (269)
Q Consensus 100 ~G~~lt~vGel~~d~~g~~~iq~P~~g-~-f~lS~--~s~d~Li~~l~~~ar----~~~~l~iv~~~~Gv~ll~~~~ 168 (269)
..+.+|+||.. . ++++.==.-++| . ..+.. .+.+++.++....-. .++.+++++..+|..+++..+
T Consensus 132 ~~~~vTVVa~q-~--g~~l~py~t~~g~~i~ll~~G~~s~~e~f~~~~~~n~~~tW~lR~~G~llmf~G~~~~~~~l 205 (248)
T PF07787_consen 132 PPGPVTVVAKQ-R--GNTLVPYTTKNGDKILLLEEGKVSAEEMFAKEHSANNTLTWILRFIGWLLMFIGFFLLFSPL 205 (248)
T ss_pred CCceEEEEEEE-e--CCEEEEEEecCCCEEEEEEcCCcCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999974 2 233331112233 3 33333 356887776444433 344555555566666655443
No 168
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.91 E-value=33 Score=25.46 Aligned_cols=8 Identities=50% Similarity=1.277 Sum_probs=6.2
Q ss_pred CCCccccc
Q 024334 251 TNCPLCRR 258 (269)
Q Consensus 251 ~~CPiCR~ 258 (269)
..||.||.
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 47999985
No 169
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.91 E-value=95 Score=33.78 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=29.9
Q ss_pred cccccccccccccc----eEEeCCCCc--ccchhhHhcC-----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYN----AVFVPCGHM--CCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~----~v~lpCgH~--~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
....|.||-+.--- -.|+-|..- ..|..|+.-- +.||.|++...+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 34589999986321 255555432 1499998532 689999988764
No 170
>PF15345 TMEM51: Transmembrane protein 51
Probab=20.88 E-value=50 Score=29.44 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 024334 159 FGTFLIAKRAIHYILQRKRR 178 (269)
Q Consensus 159 ~Gv~ll~~~~~r~~~~~r~~ 178 (269)
.|++||+..+.-.++.+|++
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555544444444444433
No 171
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=20.83 E-value=51 Score=25.07 Aligned_cols=38 Identities=24% Similarity=0.636 Sum_probs=28.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcCCCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~ 262 (269)
...|.+|-..... =||-+ |..|+-.-..|.+|-..|..
T Consensus 44 ~~~C~~CK~~v~q-----~g~~Y-Cq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQ-----PGAKY-CQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred Ccccccccccccc-----CCCcc-ChhhhcccCcccccCCeecc
Confidence 3479999765332 15555 99999999999999988843
No 172
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.64 E-value=1.8e+02 Score=27.06 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 024334 161 TFLIAKRAIHYILQRKRRWELH 182 (269)
Q Consensus 161 v~ll~~~~~r~~~~~r~~~~~~ 182 (269)
+.++.|..+||.+.++..+++|
T Consensus 271 IMvIIYLILRYRRKKKmkKKlQ 292 (299)
T PF02009_consen 271 IMVIIYLILRYRRKKKMKKKLQ 292 (299)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 4444555666665555555544
Done!