Query 024334
Match_columns 269
No_of_seqs 236 out of 1392
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.6 1.1E-15 3.8E-20 109.5 4.9 55 215-269 11-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.5 1.3E-14 4.4E-19 102.3 1.6 52 218-269 6-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.4 5.1E-14 1.7E-18 99.5 1.1 51 218-268 7-63 (64)
4 2yho_A E3 ubiquitin-protein li 99.4 2.1E-13 7.1E-18 100.4 3.6 50 219-268 18-67 (79)
5 4ic3_A E3 ubiquitin-protein li 99.3 5.5E-13 1.9E-17 96.7 3.9 50 219-268 24-73 (74)
6 2ecg_A Baculoviral IAP repeat- 99.3 8.4E-13 2.9E-17 95.8 1.7 50 219-268 25-74 (75)
7 3t6p_A Baculoviral IAP repeat- 99.0 1E-10 3.4E-15 108.3 4.0 50 219-268 295-344 (345)
8 2d8t_A Dactylidin, ring finger 99.0 2.8E-10 9.5E-15 81.3 4.2 45 217-262 13-61 (71)
9 2ysl_A Tripartite motif-contai 99.0 7.3E-10 2.5E-14 79.1 5.4 45 217-262 18-69 (73)
10 2ecn_A Ring finger protein 141 98.9 4E-10 1.4E-14 80.0 2.7 48 218-267 14-65 (70)
11 2csy_A Zinc finger protein 183 98.9 8E-10 2.7E-14 80.8 4.2 45 217-262 13-61 (81)
12 1chc_A Equine herpes virus-1 r 98.9 8E-10 2.7E-14 77.9 3.0 49 219-268 5-58 (68)
13 2ea6_A Ring finger protein 4; 98.9 9.4E-10 3.2E-14 77.4 2.9 45 217-262 13-68 (69)
14 2djb_A Polycomb group ring fin 98.8 2.4E-09 8.1E-14 76.5 4.3 47 216-263 12-63 (72)
15 4ayc_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 87.6 2.8 44 220-264 54-101 (138)
16 2yur_A Retinoblastoma-binding 98.8 2.3E-09 8E-14 77.1 3.6 46 216-262 12-64 (74)
17 2kiz_A E3 ubiquitin-protein li 98.8 2.5E-09 8.6E-14 75.5 3.6 47 218-265 13-66 (69)
18 3ng2_A RNF4, snurf, ring finge 98.8 1.2E-09 4E-14 77.5 1.6 43 219-262 10-63 (71)
19 2ecy_A TNF receptor-associated 98.8 2.4E-09 8.2E-14 75.1 3.2 45 217-262 13-62 (66)
20 2xeu_A Ring finger protein 4; 98.8 1.8E-09 6.1E-14 74.8 2.4 47 220-267 4-63 (64)
21 2ct2_A Tripartite motif protei 98.8 4.8E-09 1.6E-13 77.3 4.4 44 217-261 13-67 (88)
22 2ecm_A Ring finger and CHY zin 98.8 3.5E-09 1.2E-13 71.3 3.0 42 219-261 5-54 (55)
23 2ect_A Ring finger protein 126 98.8 4.6E-09 1.6E-13 75.9 3.8 45 217-262 13-64 (78)
24 1bor_A Transcription factor PM 98.7 2.7E-09 9.2E-14 72.9 1.7 43 219-262 6-49 (56)
25 2egp_A Tripartite motif-contai 98.7 6.6E-09 2.3E-13 75.1 3.5 45 217-262 10-65 (79)
26 2ecw_A Tripartite motif-contai 98.7 1.6E-08 5.3E-13 73.7 5.4 45 217-262 17-71 (85)
27 2ecv_A Tripartite motif-contai 98.7 1.4E-08 4.6E-13 74.1 4.5 45 217-262 17-71 (85)
28 3ztg_A E3 ubiquitin-protein li 98.7 1.1E-08 3.6E-13 76.4 3.9 44 217-261 11-61 (92)
29 1iym_A EL5; ring-H2 finger, ub 98.7 9.9E-09 3.4E-13 69.1 3.4 42 219-261 5-54 (55)
30 1x4j_A Ring finger protein 38; 98.7 7.1E-09 2.4E-13 74.5 2.8 44 218-262 22-72 (75)
31 2l0b_A E3 ubiquitin-protein li 98.7 7.7E-09 2.6E-13 77.4 3.1 44 218-262 39-89 (91)
32 2ysj_A Tripartite motif-contai 98.7 2.5E-08 8.7E-13 69.1 4.9 40 216-256 17-63 (63)
33 2ep4_A Ring finger protein 24; 98.6 6.2E-09 2.1E-13 74.5 1.7 48 217-265 13-67 (74)
34 1e4u_A Transcriptional repress 98.6 8E-09 2.7E-13 75.6 2.0 50 218-268 10-68 (78)
35 3l11_A E3 ubiquitin-protein li 98.6 1.3E-08 4.4E-13 79.2 2.8 45 217-262 13-62 (115)
36 2y1n_A E3 ubiquitin-protein li 98.6 1.8E-08 6.3E-13 94.2 3.9 47 220-267 333-384 (389)
37 1g25_A CDK-activating kinase a 98.6 1.4E-08 4.7E-13 71.0 2.0 42 220-262 4-55 (65)
38 2ecj_A Tripartite motif-contai 98.6 2.3E-08 8E-13 67.8 3.1 39 217-256 13-58 (58)
39 3fl2_A E3 ubiquitin-protein li 98.6 1.8E-08 6.1E-13 79.4 2.5 43 219-262 52-99 (124)
40 1t1h_A Gspef-atpub14, armadill 98.6 2.5E-08 8.5E-13 72.0 2.9 44 218-262 7-55 (78)
41 3lrq_A E3 ubiquitin-protein li 98.5 2E-08 6.7E-13 76.5 2.0 43 219-262 22-70 (100)
42 2y43_A E3 ubiquitin-protein li 98.5 3.9E-08 1.3E-12 74.4 2.3 44 218-262 21-69 (99)
43 2ckl_A Polycomb group ring fin 98.5 5.3E-08 1.8E-12 74.9 2.9 44 218-262 14-62 (108)
44 1z6u_A NP95-like ring finger p 98.5 4.8E-08 1.6E-12 79.9 2.5 43 219-262 78-125 (150)
45 1jm7_A BRCA1, breast cancer ty 98.5 3.7E-08 1.3E-12 75.8 1.6 42 220-262 22-70 (112)
46 3hct_A TNF receptor-associated 98.4 1.1E-07 3.7E-12 74.4 3.9 46 216-262 15-65 (118)
47 2ckl_B Ubiquitin ligase protei 98.4 5.9E-08 2E-12 80.1 2.1 45 217-262 52-102 (165)
48 1wgm_A Ubiquitin conjugation f 98.4 3.2E-07 1.1E-11 69.8 4.8 46 216-262 19-69 (98)
49 2kr4_A Ubiquitin conjugation f 98.4 2.5E-07 8.7E-12 68.4 4.0 45 217-262 12-60 (85)
50 1jm7_B BARD1, BRCA1-associated 98.4 1E-07 3.6E-12 74.4 1.8 42 219-261 22-66 (117)
51 1rmd_A RAG1; V(D)J recombinati 98.4 1.2E-07 4.2E-12 73.7 2.2 44 218-262 22-70 (116)
52 1v87_A Deltex protein 2; ring- 98.3 1.2E-07 4E-12 73.4 1.6 42 220-262 26-94 (114)
53 2kre_A Ubiquitin conjugation f 98.3 3.5E-07 1.2E-11 69.8 3.9 45 217-262 27-75 (100)
54 2ecl_A Ring-box protein 2; RNF 98.3 2.3E-07 7.8E-12 67.9 2.6 42 220-262 16-76 (81)
55 4ap4_A E3 ubiquitin ligase RNF 98.3 1.9E-07 6.4E-12 73.4 1.7 43 219-262 7-60 (133)
56 4ap4_A E3 ubiquitin ligase RNF 98.2 4E-07 1.4E-11 71.5 2.1 49 218-267 71-132 (133)
57 2c2l_A CHIP, carboxy terminus 98.2 7.5E-07 2.6E-11 78.5 3.9 45 217-262 206-255 (281)
58 3knv_A TNF receptor-associated 98.2 2.6E-07 8.8E-12 74.8 0.6 43 217-260 29-76 (141)
59 3hcs_A TNF receptor-associated 98.1 1.6E-06 5.4E-11 71.8 3.3 46 216-262 15-65 (170)
60 3dpl_R Ring-box protein 1; ubi 98.0 1.7E-06 5.8E-11 66.8 2.4 42 219-261 37-100 (106)
61 2f42_A STIP1 homology and U-bo 97.9 1.4E-05 4.7E-10 67.2 6.1 45 217-262 104-153 (179)
62 2yu4_A E3 SUMO-protein ligase 97.9 8.1E-06 2.8E-10 61.2 3.6 41 218-259 6-59 (94)
63 4a0k_B E3 ubiquitin-protein li 97.8 3E-06 1E-10 66.5 0.4 42 219-261 48-111 (117)
64 2d8s_A Cellular modulator of i 97.7 2.2E-05 7.5E-10 57.4 3.4 43 219-262 15-70 (80)
65 3htk_C E3 SUMO-protein ligase 97.7 6.9E-05 2.4E-09 66.4 6.6 45 217-262 179-232 (267)
66 3vk6_A E3 ubiquitin-protein li 97.5 7.1E-05 2.4E-09 56.7 3.4 44 222-266 4-53 (101)
67 1wim_A KIAA0161 protein; ring 97.4 3.2E-05 1.1E-09 57.7 0.4 40 219-259 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 97.1 0.00024 8.3E-09 49.0 2.8 48 219-267 3-57 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 96.5 0.0011 3.6E-08 45.6 1.9 43 219-261 6-58 (60)
70 2ct0_A Non-SMC element 1 homol 95.5 0.015 5.1E-07 41.6 4.2 45 218-263 14-65 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 95.0 0.0062 2.1E-07 56.0 1.0 44 218-262 307-373 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 84.1 0.3 1E-05 36.0 1.0 29 220-249 4-35 (101)
73 2ko5_A Ring finger protein Z; 81.2 0.55 1.9E-05 34.9 1.4 45 219-265 28-76 (99)
74 2zet_C Melanophilin; complex, 79.7 1.7 5.8E-05 35.1 4.0 41 218-259 67-117 (153)
75 2cs3_A Protein C14ORF4, MY039 68.6 1.9 6.6E-05 31.1 1.4 31 219-250 15-49 (93)
76 3nw0_A Non-structural maintena 68.1 2.6 8.9E-05 36.3 2.5 44 219-263 180-230 (238)
77 1zbd_B Rabphilin-3A; G protein 64.1 7.3 0.00025 30.6 4.2 40 219-259 55-107 (134)
78 1mm2_A MI2-beta; PHD, zinc fin 51.3 9 0.00031 25.6 2.4 11 218-228 8-18 (61)
79 1fp0_A KAP-1 corepressor; PHD 45.7 12 0.00043 27.1 2.5 13 217-229 23-35 (88)
80 2knc_B Integrin beta-3; transm 45.4 77 0.0026 22.3 7.5 22 165-186 31-52 (79)
81 3i2d_A E3 SUMO-protein ligase 43.2 11 0.00037 34.7 2.2 42 218-260 248-298 (371)
82 1weo_A Cellulose synthase, cat 41.9 13 0.00044 27.2 2.0 45 218-262 15-70 (93)
83 4fo9_A E3 SUMO-protein ligase 38.6 15 0.0005 33.7 2.3 43 218-261 214-265 (360)
84 2yql_A PHD finger protein 21A; 38.3 8.5 0.00029 25.1 0.5 10 219-228 9-18 (56)
85 2fiy_A Protein FDHE homolog; F 35.8 11 0.00039 33.6 1.1 42 218-259 181-231 (309)
86 1lko_A Rubrerythrin all-iron(I 34.1 17 0.00059 29.9 1.9 30 232-265 156-186 (191)
87 2knc_B Integrin beta-3; transm 34.0 1.2E+02 0.0041 21.2 7.9 35 152-187 15-49 (79)
88 2jne_A Hypothetical protein YF 33.8 11 0.00038 28.0 0.6 42 218-264 31-75 (101)
89 2l5u_A Chromodomain-helicase-D 33.1 18 0.0006 24.1 1.5 10 219-228 11-20 (61)
90 3pwf_A Rubrerythrin; non heme 32.5 17 0.00057 29.5 1.5 30 232-266 139-169 (170)
91 2a20_A Regulating synaptic mem 31.6 3.4 0.00012 27.9 -2.3 22 217-241 7-28 (62)
92 2d8v_A Zinc finger FYVE domain 28.2 24 0.00082 24.3 1.5 31 218-250 7-38 (67)
93 6rxn_A Rubredoxin; electron tr 26.9 28 0.00097 22.1 1.6 15 251-265 31-45 (46)
94 3m62_A Ubiquitin conjugation f 25.4 75 0.0025 32.8 5.1 47 216-262 888-938 (968)
95 2g45_A Ubiquitin carboxyl-term 24.2 39 0.0013 26.2 2.2 27 219-245 34-60 (129)
96 3mjh_B Early endosome antigen 24.1 6.7 0.00023 23.5 -1.7 7 220-226 6-12 (34)
97 4rxn_A Rubredoxin; electron tr 23.5 35 0.0012 22.4 1.6 16 251-266 37-52 (54)
98 1xwh_A Autoimmune regulator; P 22.9 16 0.00056 24.6 -0.2 10 219-228 8-17 (66)
99 3ql9_A Transcriptional regulat 22.6 47 0.0016 25.8 2.4 40 219-259 57-111 (129)
100 3zyq_A Hepatocyte growth facto 22.3 1.3E+02 0.0045 25.0 5.4 46 216-262 161-222 (226)
101 3c5k_A HD6, histone deacetylas 21.4 49 0.0017 24.8 2.2 25 219-244 24-48 (109)
102 2v3b_B Rubredoxin 2, rubredoxi 21.2 46 0.0016 21.8 1.8 15 252-266 38-52 (55)
103 2ziu_A MUS81 protein; helix-ha 21.2 83 0.0028 27.5 4.1 82 59-145 18-105 (311)
104 1e8j_A Rubredoxin; iron-sulfur 21.1 44 0.0015 21.6 1.6 14 252-265 38-51 (52)
105 2hgo_A CASSIICOLIN; toxin, dis 20.8 44 0.0015 18.3 1.3 26 221-246 2-27 (27)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=109.48 Aligned_cols=55 Identities=27% Similarity=0.645 Sum_probs=50.1
Q ss_pred CCccccccccccccccceEEeCCCCcccchhhHhcCCCCccccccccceEEcccC
Q 024334 215 DRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 269 (269)
Q Consensus 215 ~~~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~~v~~f~~ 269 (269)
...+...|+||++++++++++||||+++|..|+..+..||+||++|..++++|+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 4445668999999999999999999988999999999999999999999999963
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.45 E-value=1.3e-14 Score=102.28 Aligned_cols=52 Identities=25% Similarity=0.779 Sum_probs=47.1
Q ss_pred cccccccccccccceEEe--CCCCcccchhhHhcCC----CCccccccccceEEcccC
Q 024334 218 MPDLCVICLEQEYNAVFV--PCGHMCCCIICSWHLT----NCPLCRRRIDQVVRTFRH 269 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~l--pCgH~~~C~~C~~~l~----~CPiCR~~I~~~v~~f~~ 269 (269)
....|+||++++++.+++ ||||+++|..|+..+. +||+||++|..++++|..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 455899999999998888 9999988999999885 999999999999999963
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.39 E-value=5.1e-14 Score=99.50 Aligned_cols=51 Identities=35% Similarity=0.795 Sum_probs=46.3
Q ss_pred cccccccccccccceEEe--CCCCcccchhhHhcCC----CCccccccccceEEccc
Q 024334 218 MPDLCVICLEQEYNAVFV--PCGHMCCCIICSWHLT----NCPLCRRRIDQVVRTFR 268 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~l--pCgH~~~C~~C~~~l~----~CPiCR~~I~~~v~~f~ 268 (269)
++..|+||++++++++++ ||||++.|..|+..+. .||+||++|..++++|.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 345899999999999998 9999988999999884 69999999999999995
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.37 E-value=2.1e-13 Score=100.38 Aligned_cols=50 Identities=42% Similarity=1.107 Sum_probs=46.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcCCCCccccccccceEEccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFR 268 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~~v~~f~ 268 (269)
...|+||+++.++++++||||.++|..|+..+..||+||.+|...+++|.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEe
Confidence 34799999999999999999997799999999999999999999999985
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.33 E-value=5.5e-13 Score=96.69 Aligned_cols=50 Identities=34% Similarity=0.872 Sum_probs=46.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcCCCCccccccccceEEccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFR 268 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~~v~~f~ 268 (269)
...|+||++...+++++||||.+.|..|+..+..||+||++|...+++|-
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEee
Confidence 45899999999999999999996699999999999999999999999985
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8.4e-13 Score=95.83 Aligned_cols=50 Identities=36% Similarity=0.905 Sum_probs=46.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcCCCCccccccccceEEccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFR 268 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~~v~~f~ 268 (269)
...|+||++..++++++||||.++|..|+..+..||+||.+|...+++|-
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEec
Confidence 45899999999999999999995699999999999999999999999985
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.03 E-value=1e-10 Score=108.30 Aligned_cols=50 Identities=42% Similarity=1.021 Sum_probs=46.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcCCCCccccccccceEEccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFR 268 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~~CPiCR~~I~~~v~~f~ 268 (269)
...|+||++...+++++||||.++|..|+..+..||+||.+|...+++|-
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC-
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeec
Confidence 45899999999999999999997799999999999999999999999985
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.8e-10 Score=81.25 Aligned_cols=45 Identities=33% Similarity=0.819 Sum_probs=39.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
.+...|.||++...+.+.+||||.| |..|+..+ ..||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 3455899999999999999999998 99999987 489999999864
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=7.3e-10 Score=79.07 Aligned_cols=45 Identities=31% Similarity=0.818 Sum_probs=39.6
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcCC-------CCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLT-------NCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l~-------~CPiCR~~I~~ 262 (269)
.....|.||++...+.+.+||||.+ |..|+..+. .||+||.++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4456899999999999999999998 999998763 79999998864
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4e-10 Score=79.97 Aligned_cols=48 Identities=27% Similarity=0.748 Sum_probs=41.9
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccceEEcc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTF 267 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~~f 267 (269)
+...|.||++...+ +++||||.+ |..|+..+ ..||+||.++......|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 35589999999999 889999997 99999987 58999999998776655
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8e-10 Score=80.78 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=39.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
.....|.||++...+.+++||||.+ |..|+..+ ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence 3456899999999999999999999 99999887 579999999864
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.87 E-value=8e-10 Score=77.86 Aligned_cols=49 Identities=37% Similarity=0.881 Sum_probs=42.0
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhHhcC----CCCccccccccceEEccc
Q 024334 219 PDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFR 268 (269)
Q Consensus 219 ~~~C~IC~~~~~~-~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~~f~ 268 (269)
...|+||++...+ .+.+||||.+ |..|+..+ ..||+||.++...++.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 3479999999988 5889999998 99999876 589999999998776553
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=9.4e-10 Score=77.37 Aligned_cols=45 Identities=31% Similarity=0.759 Sum_probs=38.1
Q ss_pred ccccccccccccccce-------EEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~-------v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
.....|.||++...+. +++||||.| |..|+..+ ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 3456899999987665 889999998 99999887 589999998864
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.4e-09 Score=76.53 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=40.5
Q ss_pred CccccccccccccccceEEe-CCCCcccchhhHhcC----CCCccccccccce
Q 024334 216 RVMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQV 263 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l----~~CPiCR~~I~~~ 263 (269)
..+...|.||++...+.+.+ ||||.| |..|+..+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34456899999999998887 999999 99999876 5899999998764
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.81 E-value=1.4e-09 Score=87.60 Aligned_cols=44 Identities=34% Similarity=0.754 Sum_probs=39.4
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccceE
Q 024334 220 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 264 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v 264 (269)
..|+||++...+++.+||||.| |..|+..+ ..||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 4699999999999999999998 99999886 48999999997654
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.81 E-value=2.3e-09 Score=77.11 Aligned_cols=46 Identities=30% Similarity=0.646 Sum_probs=39.6
Q ss_pred CccccccccccccccceEEeC-CCCcccchhhHhcC------CCCccccccccc
Q 024334 216 RVMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~~~v~lp-CgH~~~C~~C~~~l------~~CPiCR~~I~~ 262 (269)
..+...|.||++...+.+.+| |||.| |..|+..+ ..||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345668999999999999999 99999 99999876 379999997654
No 17
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.80 E-value=2.5e-09 Score=75.54 Aligned_cols=47 Identities=28% Similarity=0.668 Sum_probs=38.6
Q ss_pred cccccccccccc---cceEEeCCCCcccchhhHhcC----CCCccccccccceEE
Q 024334 218 MPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 265 (269)
Q Consensus 218 ~~~~C~IC~~~~---~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~ 265 (269)
....|.||++.. ..++.+||||.| |..|+..| ..||+||..|....+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 345899997654 567889999998 99999887 589999999987544
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.79 E-value=1.2e-09 Score=77.49 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=37.2
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 219 PDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~-------v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
...|.||++...+. +.+||||.+ |..|+..+ ..||+||.++..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccCh
Confidence 45799999987665 899999998 99999877 589999999874
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.4e-09 Score=75.15 Aligned_cols=45 Identities=24% Similarity=0.452 Sum_probs=39.4
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
.+...|.||++...+.+.+||||.+ |..|+..+ ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456899999999999999999998 99999876 479999999865
No 20
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.79 E-value=1.8e-09 Score=74.78 Aligned_cols=47 Identities=30% Similarity=0.764 Sum_probs=39.4
Q ss_pred cccccccccccce-------EEeCCCCcccchhhHhcC----CCCcccccccc--ceEEcc
Q 024334 220 DLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRID--QVVRTF 267 (269)
Q Consensus 220 ~~C~IC~~~~~~~-------v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~--~~v~~f 267 (269)
..|.||++...+. +.+||||.+ |..|+..+ ..||+||.++. .+.++|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 4799999987664 889999998 99999877 58999999987 466665
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.8e-09 Score=77.30 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=38.1
Q ss_pred ccccccccccccccc----eEEeCCCCcccchhhHhcC-------CCCcccccccc
Q 024334 217 VMPDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL-------TNCPLCRRRID 261 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~----~v~lpCgH~~~C~~C~~~l-------~~CPiCR~~I~ 261 (269)
.+...|.||++...+ .+.+||||.+ |..|+..+ ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 345689999999888 9999999999 99999877 48999999764
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.76 E-value=3.5e-09 Score=71.31 Aligned_cols=42 Identities=36% Similarity=0.753 Sum_probs=36.4
Q ss_pred ccccccccccccc----eEEeCCCCcccchhhHhcC----CCCcccccccc
Q 024334 219 PDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 261 (269)
Q Consensus 219 ~~~C~IC~~~~~~----~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~ 261 (269)
...|.||++...+ ++++||||.+ |..|+..+ ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 3479999998755 8899999998 99999887 68999999875
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.76 E-value=4.6e-09 Score=75.94 Aligned_cols=45 Identities=24% Similarity=0.553 Sum_probs=36.6
Q ss_pred ccccccccccccc---cceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 217 VMPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~---~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
.....|.||++.. ..++.+||||.| |..|+..| ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence 3456899997654 455778999998 99999877 589999999875
No 24
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=2.7e-09 Score=72.86 Aligned_cols=43 Identities=23% Similarity=0.494 Sum_probs=38.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC-CCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-~~CPiCR~~I~~ 262 (269)
...|.||++...+.+.+||||.+ |..|+..+ ..||+||+.+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCcc-cHHHHccCCCCCCcCCcEeec
Confidence 45799999999999999999998 99999876 489999998763
No 25
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.71 E-value=6.6e-09 Score=75.05 Aligned_cols=45 Identities=29% Similarity=0.590 Sum_probs=38.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-----------CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----------TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----------~~CPiCR~~I~~ 262 (269)
.+...|.||++...+.+.+||||.+ |..|+..+ ..||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3456899999999999999999998 99999864 379999998864
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.71 E-value=1.6e-08 Score=73.72 Aligned_cols=45 Identities=33% Similarity=0.573 Sum_probs=39.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----------CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----------~~CPiCR~~I~~ 262 (269)
.....|.||++...+.+.+||||.+ |..|+..+ ..||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456899999999999999999998 99999763 479999999864
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.4e-08 Score=74.05 Aligned_cols=45 Identities=31% Similarity=0.659 Sum_probs=39.1
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----------CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----------~~CPiCR~~I~~ 262 (269)
.....|.||++...+.+.+||||.+ |..|...+ ..||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456899999999999999999998 99999764 589999998874
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=76.38 Aligned_cols=44 Identities=32% Similarity=0.692 Sum_probs=38.6
Q ss_pred ccccccccccccccceEEeC-CCCcccchhhHhcC------CCCcccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRID 261 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lp-CgH~~~C~~C~~~l------~~CPiCR~~I~ 261 (269)
.+...|.||++...+.+.+| |||.| |..|+..+ ..||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34568999999999999999 99999 99999876 38999999873
No 29
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.68 E-value=9.9e-09 Score=69.11 Aligned_cols=42 Identities=36% Similarity=0.758 Sum_probs=35.6
Q ss_pred ccccccccccccc---eEEeC-CCCcccchhhHhcC----CCCcccccccc
Q 024334 219 PDLCVICLEQEYN---AVFVP-CGHMCCCIICSWHL----TNCPLCRRRID 261 (269)
Q Consensus 219 ~~~C~IC~~~~~~---~v~lp-CgH~~~C~~C~~~l----~~CPiCR~~I~ 261 (269)
...|.||++...+ .+.+| |||.+ |..|...+ ..||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 3479999998766 77787 99998 99999987 48999999874
No 30
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=7.1e-09 Score=74.53 Aligned_cols=44 Identities=27% Similarity=0.639 Sum_probs=36.4
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~---~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
....|.||++...+ ++.+||||.| |..|+..| ..||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34589999976544 4888999998 99999887 589999998865
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.68 E-value=7.7e-09 Score=77.43 Aligned_cols=44 Identities=27% Similarity=0.535 Sum_probs=37.4
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~---~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
....|.||++...+ ++.+||||.| |..|+..| ..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 45589999988766 8889999998 99999887 589999998864
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.5e-08 Score=69.08 Aligned_cols=40 Identities=35% Similarity=0.838 Sum_probs=34.7
Q ss_pred CccccccccccccccceEEeCCCCcccchhhHhcC-------CCCccc
Q 024334 216 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLC 256 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-------~~CPiC 256 (269)
..+...|.||++...+.+.+||||.| |..|+..+ ..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 34456899999999999999999998 99999876 279998
No 33
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=6.2e-09 Score=74.50 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=38.5
Q ss_pred ccccccccccccc---cceEEeCCCCcccchhhHhcC----CCCccccccccceEE
Q 024334 217 VMPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 265 (269)
Q Consensus 217 ~~~~~C~IC~~~~---~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~ 265 (269)
.....|.||++.. ...+.+||||.| |..|+..| ..||+||.++.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3455899999875 345667999998 99999887 589999999877544
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.63 E-value=8e-09 Score=75.55 Aligned_cols=50 Identities=28% Similarity=0.717 Sum_probs=39.5
Q ss_pred cccccccccccc--cceEEeC--CCCcccchhhHhcCC-----CCccccccccceEEccc
Q 024334 218 MPDLCVICLEQE--YNAVFVP--CGHMCCCIICSWHLT-----NCPLCRRRIDQVVRTFR 268 (269)
Q Consensus 218 ~~~~C~IC~~~~--~~~v~lp--CgH~~~C~~C~~~l~-----~CPiCR~~I~~~v~~f~ 268 (269)
++..|+||++.. .+..++| |||.+ |..|...+. .||+||+++......|+
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 345899999976 4567776 99998 999998763 79999999987555554
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=79.16 Aligned_cols=45 Identities=36% Similarity=0.783 Sum_probs=39.5
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
.+...|.||++...+.+.+||||.| |..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4456899999999999999999999 99999887 379999998864
No 36
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.60 E-value=1.8e-08 Score=94.17 Aligned_cols=47 Identities=34% Similarity=0.832 Sum_probs=42.0
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccceEEcc
Q 024334 220 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTF 267 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~~v~~f 267 (269)
..|+||++...+++++||||.+ |..|+..+ ..||+||+++.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 5899999999999999999999 99999865 58999999998876654
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=1.4e-08 Score=70.97 Aligned_cols=42 Identities=31% Similarity=0.641 Sum_probs=34.3
Q ss_pred cccccccc-cccce----EEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 220 DLCVICLE-QEYNA----VFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~-~~~~~----v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
..|+||++ ...+. +++||||.+ |..|+.++ ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 44333 678999999 99999887 479999999864
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.3e-08 Score=67.81 Aligned_cols=39 Identities=33% Similarity=0.825 Sum_probs=34.3
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-------CCCccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLC 256 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-------~~CPiC 256 (269)
.+...|.||++...+.+.+||||.| |..|+..+ ..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 3456899999999999999999998 99999876 479998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.57 E-value=1.8e-08 Score=79.45 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=38.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45899999999999999999999 99999766 389999999975
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.56 E-value=2.5e-08 Score=72.04 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=38.8
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
+...|.||++-..+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 355899999999999999999999 99999876 479999999864
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.55 E-value=2e-08 Score=76.51 Aligned_cols=43 Identities=30% Similarity=0.809 Sum_probs=38.4
Q ss_pred ccccccccccccceEE-eCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~-lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
...|.||++...+.+. ++|||.| |..|+..+ ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4589999999999999 9999999 99999877 489999998853
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.49 E-value=3.9e-08 Score=74.36 Aligned_cols=44 Identities=30% Similarity=0.661 Sum_probs=38.7
Q ss_pred cccccccccccccceEEe-CCCCcccchhhHhcC----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
+...|.||++...+.+.+ ||||.| |..|...+ ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345899999999999888 999999 99999876 489999998874
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.48 E-value=5.3e-08 Score=74.86 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=39.1
Q ss_pred cccccccccccccceEEe-CCCCcccchhhHhcC----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
+...|.||++...+.+.+ ||||.| |..|+..+ ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 345899999999999998 999999 99999887 589999999875
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.47 E-value=4.8e-08 Score=79.95 Aligned_cols=43 Identities=35% Similarity=0.710 Sum_probs=38.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
...|.||++...+.+.+||||.| |..|+..+ ..||+||..+..
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence 45899999999999999999999 99999876 279999999875
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=3.7e-08 Score=75.78 Aligned_cols=42 Identities=38% Similarity=0.869 Sum_probs=37.2
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC-------CCCccccccccc
Q 024334 220 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-------~~CPiCR~~I~~ 262 (269)
..|.||++...+.+.+||||.+ |..|+..+ ..||+||.++..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4799999999999999999999 99999876 279999998864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.44 E-value=1.1e-07 Score=74.35 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=40.4
Q ss_pred CccccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 216 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
......|+||++...+.+.+||||.+ |..|+..+ ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34456899999999999999999999 99999876 389999999875
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.43 E-value=5.9e-08 Score=80.14 Aligned_cols=45 Identities=29% Similarity=0.657 Sum_probs=38.8
Q ss_pred ccccccccccccccceEEe-CCCCcccchhhHhcC-----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
.....|+||++...+.+.+ ||||.| |..|+..+ ..||+||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3455899999999999887 999999 99999876 369999999853
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.37 E-value=3.2e-07 Score=69.76 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=40.4
Q ss_pred CccccccccccccccceEEeCCC-CcccchhhHhcC----CCCccccccccc
Q 024334 216 RVMPDLCVICLEQEYNAVFVPCG-HMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~~~v~lpCg-H~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
..+...|+||++-.++.|.+||| |.+ |..|+..+ ..||+||.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34567999999999999999999 999 99999877 479999998764
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.37 E-value=2.5e-07 Score=68.39 Aligned_cols=45 Identities=11% Similarity=-0.024 Sum_probs=40.1
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
.+...|+||++-.++.|.+||||.+ |..|+..+ ..||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4466999999999999999999998 99999877 589999998764
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=1e-07 Score=74.36 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=38.1
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhcC--CCCcccccccc
Q 024334 219 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL--TNCPLCRRRID 261 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l--~~CPiCR~~I~ 261 (269)
...|.||++...+.+.+ ||||.| |..|+..+ ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhcCCCcCCCCcCc
Confidence 45899999999999999 999999 99999988 57999999885
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.35 E-value=1.2e-07 Score=73.66 Aligned_cols=44 Identities=30% Similarity=0.577 Sum_probs=39.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
+...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 355899999999999999999999 99999865 479999999865
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.33 E-value=1.2e-07 Score=73.38 Aligned_cols=42 Identities=24% Similarity=0.714 Sum_probs=33.9
Q ss_pred cccccccccccc------------------eEEeCCCCcccchhhHhcC---------CCCccccccccc
Q 024334 220 DLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL---------TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~~~------------------~v~lpCgH~~~C~~C~~~l---------~~CPiCR~~I~~ 262 (269)
..|.||++...+ +.++||||.| |..|+..| ..||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 379999988533 3388999999 99999875 279999988754
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.32 E-value=3.5e-07 Score=69.80 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=40.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
.+...|+||++-.++.|.+||||.+ |..|+..+ ..||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 4466999999999999999999998 99999877 489999998864
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.3e-07 Score=67.89 Aligned_cols=42 Identities=31% Similarity=0.606 Sum_probs=32.1
Q ss_pred cccccccccccc--------------eEEe-CCCCcccchhhHhcC----CCCccccccccc
Q 024334 220 DLCVICLEQEYN--------------AVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 220 ~~C~IC~~~~~~--------------~v~l-pCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
..|.||++...+ .+.+ +|||.| +..|+.++ ..||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcch
Confidence 457777776543 4444 599999 99999987 589999998754
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.28 E-value=1.9e-07 Score=73.43 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=37.3
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 219 PDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~~~~-------v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
...|.||++...+. +.+||||.| |..|+..+ ..||+||..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence 44799999987776 999999999 99999887 489999998874
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.21 E-value=4e-07 Score=71.53 Aligned_cols=49 Identities=29% Similarity=0.708 Sum_probs=40.1
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhHhcC----CCCccccccccc--eEEcc
Q 024334 218 MPDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 267 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~-------v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~--~v~~f 267 (269)
+...|.||++...+. +.++|||.+ |..|+..+ ..||+||.++.. +.++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 345799999877664 889999999 99999876 699999999864 55555
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=7.5e-07 Score=78.49 Aligned_cols=45 Identities=16% Similarity=-0.037 Sum_probs=39.3
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
.....|+||++-..++|.+||||.+ |..|+..+ ..||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456899999999999999999999 99999876 249999999863
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.19 E-value=2.6e-07 Score=74.83 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=38.3
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRI 260 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I 260 (269)
.+...|.||++-..+.+.++|||.| |..|+..+ ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 4456999999999999999999999 99999887 3899999975
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.08 E-value=1.6e-06 Score=71.75 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=40.4
Q ss_pred CccccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 216 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
..+...|.||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 34456899999999999999999999 99999876 389999999875
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.03 E-value=1.7e-06 Score=66.76 Aligned_cols=42 Identities=26% Similarity=0.549 Sum_probs=33.4
Q ss_pred ccccccccccccc------------------eEEeCCCCcccchhhHhcC----CCCcccccccc
Q 024334 219 PDLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 261 (269)
Q Consensus 219 ~~~C~IC~~~~~~------------------~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~ 261 (269)
.+.|.||++...+ .+.+||||.| +..|+..+ ..||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 3478888876432 5778999999 99999987 58999999853
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.91 E-value=1.4e-05 Score=67.25 Aligned_cols=45 Identities=16% Similarity=-0.047 Sum_probs=39.5
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-----CCCccccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
.....|+||++-..++|.+||||.+ |..|+..+ ..||+||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4566999999999999999999999 99998876 259999998764
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=8.1e-06 Score=61.23 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=35.6
Q ss_pred cccccccccccccceEEeC-CCCcccchhhHhcC----------CCCcc--cccc
Q 024334 218 MPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL----------TNCPL--CRRR 259 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lp-CgH~~~C~~C~~~l----------~~CPi--CR~~ 259 (269)
....|+||++-..+.|.+| |||.| |..|+..+ ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3568999999999999997 99999 99998776 28999 9855
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.81 E-value=3e-06 Score=66.50 Aligned_cols=42 Identities=26% Similarity=0.549 Sum_probs=0.4
Q ss_pred ccccccccccccc------------------eEEeCCCCcccchhhHhcC----CCCcccccccc
Q 024334 219 PDLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 261 (269)
Q Consensus 219 ~~~C~IC~~~~~~------------------~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~ 261 (269)
.+.|.||++...+ ++.+||+|.| +..|+..+ ..||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 3589999977543 2346999999 99999987 48999999853
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=2.2e-05 Score=57.39 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=34.8
Q ss_pred ccccccccccc--cceEEeCCC-----CcccchhhHhcC------CCCccccccccc
Q 024334 219 PDLCVICLEQE--YNAVFVPCG-----HMCCCIICSWHL------TNCPLCRRRIDQ 262 (269)
Q Consensus 219 ~~~C~IC~~~~--~~~v~lpCg-----H~~~C~~C~~~l------~~CPiCR~~I~~ 262 (269)
...|.||++.. .+.+++||. |.+ ...|+.+| ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45799999754 345678996 998 89999988 389999998864
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.66 E-value=6.9e-05 Score=66.40 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEe-CCCCcccchhhHhcC------CCCcc--ccccccc
Q 024334 217 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPL--CRRRIDQ 262 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l------~~CPi--CR~~I~~ 262 (269)
.....|+||++-.++.|.. .|||.| |..|+..+ ..||+ ||..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3456899999999999975 999999 99999876 26999 9987653
No 66
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.46 E-value=7.1e-05 Score=56.67 Aligned_cols=44 Identities=23% Similarity=0.576 Sum_probs=33.3
Q ss_pred cccccccccc-eEEeCCCCcccchhhHhcC-----CCCccccccccceEEc
Q 024334 222 CVICLEQEYN-AVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRT 266 (269)
Q Consensus 222 C~IC~~~~~~-~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~I~~~v~~ 266 (269)
|.+|--.-.. .-++||.|++ |.+|+..+ +.||+|+.+|.++...
T Consensus 4 C~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred cCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 5566544333 4677999988 99999654 5899999999987654
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.36 E-value=3.2e-05 Score=57.69 Aligned_cols=40 Identities=23% Similarity=0.657 Sum_probs=30.4
Q ss_pred ccccccccccccceE---EeCCCCcccchhhHhcC------------CCCcc--cccc
Q 024334 219 PDLCVICLEQEYNAV---FVPCGHMCCCIICSWHL------------TNCPL--CRRR 259 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v---~lpCgH~~~C~~C~~~l------------~~CPi--CR~~ 259 (269)
...|.||++...... +.+|||.+ |.+|.... ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 347999998765432 23899999 99997543 27999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.13 E-value=0.00024 Score=49.02 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=40.3
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhcC----CCCccccccccc--eEEcc
Q 024334 219 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 267 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l----~~CPiCR~~I~~--~v~~f 267 (269)
...|+||++-..+.|+. +|||++ +..|+.++ .+||+++.++.. ++++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 35799999999999999 999999 99999987 579999998854 45544
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.47 E-value=0.0011 Score=45.62 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=33.0
Q ss_pred ccccccccccccceEEeCCCCc----ccchhhHhcC------CCCcccccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHM----CCCIICSWHL------TNCPLCRRRID 261 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~----~~C~~C~~~l------~~CPiCR~~I~ 261 (269)
...|.||++...+..+.||.+. +.-..|..+| ..||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4589999987766667897642 2367899887 47999998864
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.47 E-value=0.015 Score=41.59 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=33.9
Q ss_pred cccccccccccccceEE-eCCCCcccchhhHhcC------CCCccccccccce
Q 024334 218 MPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL------TNCPLCRRRIDQV 263 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~-lpCgH~~~C~~C~~~l------~~CPiCR~~I~~~ 263 (269)
....|.||++......- ..|+|.+ -..|+.+| .+||+||+.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34589999987644322 2799999 79999876 4799999887643
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.95 E-value=0.0062 Score=55.97 Aligned_cols=44 Identities=20% Similarity=0.573 Sum_probs=33.5
Q ss_pred cccccccccccccc--------eEEeCCCCcccchhhHhcC---------------CCCccccccccc
Q 024334 218 MPDLCVICLEQEYN--------AVFVPCGHMCCCIICSWHL---------------TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~--------~v~lpCgH~~~C~~C~~~l---------------~~CPiCR~~I~~ 262 (269)
....|.|||+...+ +-..+|||.| -..|..+| ..||.||.+|+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34579999986544 2234799999 89999776 259999999875
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=84.10 E-value=0.3 Score=35.99 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=23.8
Q ss_pred ccccccccc-ccceEE--eCCCCcccchhhHhc
Q 024334 220 DLCVICLEQ-EYNAVF--VPCGHMCCCIICSWH 249 (269)
Q Consensus 220 ~~C~IC~~~-~~~~v~--lpCgH~~~C~~C~~~ 249 (269)
..|.||.+. ...++. ++|+|.+ |..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 479999975 556665 8999998 9999986
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=81.16 E-value=0.55 Score=34.90 Aligned_cols=45 Identities=27% Similarity=0.730 Sum_probs=35.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccceEE
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 265 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~~v~ 265 (269)
..-|..|+-..+..| .|.--.+|..|...| ..||+|..++...++
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred cccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 458999999988766 477555699999987 589999988866544
No 74
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=79.74 E-value=1.7 Score=35.11 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=29.5
Q ss_pred cccccccccccc-----cceEEeCCCCcccchhhHhcC-----CCCcccccc
Q 024334 218 MPDLCVICLEQE-----YNAVFVPCGHMCCCIICSWHL-----TNCPLCRRR 259 (269)
Q Consensus 218 ~~~~C~IC~~~~-----~~~v~lpCgH~~~C~~C~~~l-----~~CPiCR~~ 259 (269)
....|.+|.... +-.+-..|.|.+ |..|.... +.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 356899999863 445556788887 89998543 578888754
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=68.65 E-value=1.9 Score=31.09 Aligned_cols=31 Identities=39% Similarity=0.793 Sum_probs=26.0
Q ss_pred ccccccccccccceEEeCC----CCcccchhhHhcC
Q 024334 219 PDLCVICLEQEYNAVFVPC----GHMCCCIICSWHL 250 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpC----gH~~~C~~C~~~l 250 (269)
.-.|.+|.++--+.-|+-| +|.| |..|....
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~s 49 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRES 49 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCee-eccccHHH
Confidence 4589999999999988887 4888 99998753
No 76
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=68.05 E-value=2.6 Score=36.34 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=32.3
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhcC------CCCccccccccce
Q 024334 219 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPLCRRRIDQV 263 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~l-pCgH~~~C~~C~~~l------~~CPiCR~~I~~~ 263 (269)
-..|.+|.+--.....= .|+|.+ -..|...+ ..||.|+.....-
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34799999876544433 388888 78899775 3899999876554
No 77
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=64.05 E-value=7.3 Score=30.56 Aligned_cols=40 Identities=25% Similarity=0.564 Sum_probs=27.4
Q ss_pred cccccccccccc-----ceEEeCCCCcccchhhHhcC--------CCCcccccc
Q 024334 219 PDLCVICLEQEY-----NAVFVPCGHMCCCIICSWHL--------TNCPLCRRR 259 (269)
Q Consensus 219 ~~~C~IC~~~~~-----~~v~lpCgH~~~C~~C~~~l--------~~CPiCR~~ 259 (269)
...|.+|..... ..+-..|.|.+ |..|.... +.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 457999998662 23445777877 88887643 468788753
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=51.33 E-value=9 Score=25.57 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=7.9
Q ss_pred ccccccccccc
Q 024334 218 MPDLCVICLEQ 228 (269)
Q Consensus 218 ~~~~C~IC~~~ 228 (269)
....|.+|.+.
T Consensus 8 ~~~~C~vC~~~ 18 (61)
T 1mm2_A 8 HMEFCRVCKDG 18 (61)
T ss_dssp SCSSCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 34579999864
No 79
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.72 E-value=12 Score=27.13 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=9.4
Q ss_pred ccccccccccccc
Q 024334 217 VMPDLCVICLEQE 229 (269)
Q Consensus 217 ~~~~~C~IC~~~~ 229 (269)
.....|.+|....
T Consensus 23 ~n~~~C~vC~~~g 35 (88)
T 1fp0_A 23 DSATICRVCQKPG 35 (88)
T ss_dssp SSSSCCSSSCSSS
T ss_pred CCCCcCcCcCCCC
Confidence 3455899999763
No 80
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.36 E-value=77 Score=22.29 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 024334 165 AKRAIHYILQRKRRWELHRRVL 186 (269)
Q Consensus 165 ~~~~~r~~~~~r~~~~~~~~~~ 186 (269)
.+++...+..+|+-.+.+++.+
T Consensus 31 iwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 31 IWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555656666555554333
No 81
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=43.21 E-value=11 Score=34.70 Aligned_cols=42 Identities=26% Similarity=0.595 Sum_probs=29.4
Q ss_pred cccccccccccccce-EEeCCCCcccchhhHh--------cCCCCccccccc
Q 024334 218 MPDLCVICLEQEYNA-VFVPCGHMCCCIICSW--------HLTNCPLCRRRI 260 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~-v~lpCgH~~~C~~C~~--------~l~~CPiCR~~I 260 (269)
..-.|++=+..-... -...|.|+. |.+-.. ..+.||+|...+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCccc
Confidence 345899888776653 456899997 655432 226999999876
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.87 E-value=13 Score=27.25 Aligned_cols=45 Identities=31% Similarity=0.621 Sum_probs=30.6
Q ss_pred cccccccccccccc----eEEeCCCCc--ccchhhHhcC-----CCCccccccccc
Q 024334 218 MPDLCVICLEQEYN----AVFVPCGHM--CCCIICSWHL-----TNCPLCRRRIDQ 262 (269)
Q Consensus 218 ~~~~C~IC~~~~~~----~v~lpCgH~--~~C~~C~~~l-----~~CPiCR~~I~~ 262 (269)
....|.||-+..-. -+|+-|..- .+|..|+.-. +.||.|.++..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34699999987322 256555432 2489998754 689999998764
No 83
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=38.58 E-value=15 Score=33.69 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=30.2
Q ss_pred cccccccccccccce-EEeCCCCcccchhhHhc--------CCCCcccccccc
Q 024334 218 MPDLCVICLEQEYNA-VFVPCGHMCCCIICSWH--------LTNCPLCRRRID 261 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~-v~lpCgH~~~C~~C~~~--------l~~CPiCR~~I~ 261 (269)
..-.|++=+.+-... -...|.|+. |.+-..= .+.||+|...+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 345899888776664 456899997 6664322 269999998774
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.32 E-value=8.5 Score=25.14 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=7.8
Q ss_pred cccccccccc
Q 024334 219 PDLCVICLEQ 228 (269)
Q Consensus 219 ~~~C~IC~~~ 228 (269)
...|.+|...
T Consensus 9 ~~~C~vC~~~ 18 (56)
T 2yql_A 9 EDFCSVCRKS 18 (56)
T ss_dssp CCSCSSSCCS
T ss_pred CCCCccCCCC
Confidence 4579999875
No 85
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.81 E-value=11 Score=33.61 Aligned_cols=42 Identities=19% Similarity=0.527 Sum_probs=32.4
Q ss_pred cccccccccccccceEEeC----CCC-cccchhhHhcC----CCCcccccc
Q 024334 218 MPDLCVICLEQEYNAVFVP----CGH-MCCCIICSWHL----TNCPLCRRR 259 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lp----CgH-~~~C~~C~~~l----~~CPiCR~~ 259 (269)
....|++|-+.+.-.++.. =|+ ...|.-|...| .+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3568999999998877752 453 23499999888 489999986
No 86
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=34.06 E-value=17 Score=29.87 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=19.6
Q ss_pred eEEeCCCCcccchhhHhcCC-CCccccccccceEE
Q 024334 232 AVFVPCGHMCCCIICSWHLT-NCPLCRRRIDQVVR 265 (269)
Q Consensus 232 ~v~lpCgH~~~C~~C~~~l~-~CPiCR~~I~~~v~ 265 (269)
.+-..|||+.. ....+ .||+|..+-..+.+
T Consensus 156 ~~C~~CG~~~~----g~~~p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 156 WRCRNCGYVHE----GTGAPELCPACAHPKAHFEL 186 (191)
T ss_dssp EEETTTCCEEE----EEECCSBCTTTCCBGGGEEE
T ss_pred EEECCCCCEee----CCCCCCCCCCCcCCHHHHHh
Confidence 44456788763 11343 89999998777654
No 87
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.97 E-value=1.2e+02 Score=21.24 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024334 152 ASFGLTIFGTFLIAKRAIHYILQRKRRWELHRRVLA 187 (269)
Q Consensus 152 l~iv~~~~Gv~ll~~~~~r~~~~~r~~~~~~~~~~~ 187 (269)
++++.+++.+.++....+|....-..+++..+ ++.
T Consensus 15 ~gvi~gilliGllllliwk~~~~i~DrrE~~k-FEk 49 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIHDRKEFAK-FEE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34444455556666777777766666655544 443
No 88
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.80 E-value=11 Score=28.02 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=28.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC---CCCccccccccceE
Q 024334 218 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---TNCPLCRRRIDQVV 264 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l---~~CPiCR~~I~~~v 264 (269)
+...|+.|...-.. . |..+.|..|.... ..||-|.++++.+.
T Consensus 31 M~~~CP~Cq~eL~~----~-g~~~hC~~C~~~f~~~a~CPdC~q~LevLk 75 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----D-NGHARCRSCGEFIEMKALCPDCHQPLQVLK 75 (101)
T ss_dssp CCCBCSSSCSBEEE----E-TTEEEETTTCCEEEEEEECTTTCSBCEEEE
T ss_pred ccccCccCCCccee----c-CCEEECccccchhhccccCcchhhHHHHHH
Confidence 44689999865321 1 3333488887766 47999998887654
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=33.12 E-value=18 Score=24.08 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=7.7
Q ss_pred cccccccccc
Q 024334 219 PDLCVICLEQ 228 (269)
Q Consensus 219 ~~~C~IC~~~ 228 (269)
...|.+|...
T Consensus 11 ~~~C~vC~~~ 20 (61)
T 2l5u_A 11 QDYCEVCQQG 20 (61)
T ss_dssp CSSCTTTSCC
T ss_pred CCCCccCCCC
Confidence 4579999874
No 90
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.55 E-value=17 Score=29.55 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=20.2
Q ss_pred eEEeCCCCcccchhhHhcC-CCCccccccccceEEc
Q 024334 232 AVFVPCGHMCCCIICSWHL-TNCPLCRRRIDQVVRT 266 (269)
Q Consensus 232 ~v~lpCgH~~~C~~C~~~l-~~CPiCR~~I~~~v~~ 266 (269)
.+-..|||+.. ... ..||+|..+-..+.++
T Consensus 139 ~~C~~CG~i~~-----~~~p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 139 YICPICGYTAV-----DEAPEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp EECTTTCCEEE-----SCCCSBCTTTCCBGGGCEEE
T ss_pred eEeCCCCCeeC-----CCCCCCCCCCCCCHHHceec
Confidence 34446788763 123 3899999988777653
No 91
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=31.56 E-value=3.4 Score=27.93 Aligned_cols=22 Identities=32% Similarity=0.756 Sum_probs=13.5
Q ss_pred ccccccccccccccceEEeCCCCcc
Q 024334 217 VMPDLCVICLEQEYNAVFVPCGHMC 241 (269)
Q Consensus 217 ~~~~~C~IC~~~~~~~v~lpCgH~~ 241 (269)
.+...|.||+...-. --|||.|
T Consensus 7 ~d~~~C~iC~KTKFA---DG~Gh~C 28 (62)
T 2a20_A 7 GDAPTCGICHKTKFA---DGCGHNC 28 (62)
T ss_dssp SCCCCCSSSSCSCCC---SSCCEEB
T ss_pred CCcchhhhhccceec---cCCCccc
Confidence 345689999864321 1377764
No 92
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.20 E-value=24 Score=24.29 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=22.6
Q ss_pred cccccccccccccceEEeCC-CCcccchhhHhcC
Q 024334 218 MPDLCVICLEQEYNAVFVPC-GHMCCCIICSWHL 250 (269)
Q Consensus 218 ~~~~C~IC~~~~~~~v~lpC-gH~~~C~~C~~~l 250 (269)
+..-|+||.+. ...--+-| |-++ |..|...+
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLY-CARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHH
T ss_pred CCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHH
Confidence 34589999998 44566678 6666 88887764
No 93
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=26.91 E-value=28 Score=22.06 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.0
Q ss_pred CCCccccccccceEE
Q 024334 251 TNCPLCRRRIDQVVR 265 (269)
Q Consensus 251 ~~CPiCR~~I~~~v~ 265 (269)
..||+|...-..+.+
T Consensus 31 w~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 31 WCCPVCGVSKDQFSP 45 (46)
T ss_dssp CBCTTTCCBGGGEEE
T ss_pred CcCcCCCCcHHHcEe
Confidence 389999998777765
No 94
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=25.44 E-value=75 Score=32.83 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=37.5
Q ss_pred CccccccccccccccceEEeCCCCcccchhhHhcC----CCCccccccccc
Q 024334 216 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l----~~CPiCR~~I~~ 262 (269)
..+...|+|=++-.+++|.+|.||.-.=+.++.++ .+||+=|++++.
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 34567999999999999999998643257777766 589999998864
No 95
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=24.23 E-value=39 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=22.4
Q ss_pred ccccccccccccceEEeCCCCcccchh
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCII 245 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~ 245 (269)
...|..|.......+-|-|||+.||+.
T Consensus 34 ~~~C~~C~~~~~LwlCL~CG~vgCgr~ 60 (129)
T 2g45_A 34 GWKCSKCDMRENLWLNLTDGSILCGRR 60 (129)
T ss_dssp BCCCSSSSCCSSEEEETTTCCEEECCB
T ss_pred CCcCccccCcCceEEeccCCccccCcc
Confidence 347999999988889999999986554
No 96
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=24.14 E-value=6.7 Score=23.45 Aligned_cols=7 Identities=29% Similarity=0.970 Sum_probs=3.3
Q ss_pred ccccccc
Q 024334 220 DLCVICL 226 (269)
Q Consensus 220 ~~C~IC~ 226 (269)
..|++|+
T Consensus 6 FiCP~C~ 12 (34)
T 3mjh_B 6 FICPQCM 12 (34)
T ss_dssp EECTTTC
T ss_pred cCCcHHH
Confidence 3455554
No 97
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.50 E-value=35 Score=22.39 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=12.3
Q ss_pred CCCccccccccceEEc
Q 024334 251 TNCPLCRRRIDQVVRT 266 (269)
Q Consensus 251 ~~CPiCR~~I~~~v~~ 266 (269)
..||+|...-..+.++
T Consensus 37 w~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 37 WVCPLCGVGKDEFEEV 52 (54)
T ss_dssp CBCTTTCCBGGGEEEC
T ss_pred CcCcCCCCcHHHceEc
Confidence 3799999887777654
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=22.88 E-value=16 Score=24.60 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=7.7
Q ss_pred cccccccccc
Q 024334 219 PDLCVICLEQ 228 (269)
Q Consensus 219 ~~~C~IC~~~ 228 (269)
...|.||.+.
T Consensus 8 ~~~C~vC~~~ 17 (66)
T 1xwh_A 8 EDECAVCRDG 17 (66)
T ss_dssp CCSBSSSSCC
T ss_pred CCCCccCCCC
Confidence 4479999875
No 99
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=22.56 E-value=47 Score=25.78 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=27.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC---------------CCCcccccc
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------------TNCPLCRRR 259 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~~C~~~l---------------~~CPiCR~~ 259 (269)
...|.+|-+.-.-+.--.|-..| |..|.... +.|+.|+.+
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~F-c~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEE-EHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCcCeecCCCCeeEecCCCchhh-hHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 44799999875433333566666 89998631 589999864
No 100
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.30 E-value=1.3e+02 Score=25.05 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=29.6
Q ss_pred Ccccccccccccccc----ceEEeCCCCcccchhhHhcC------------CCCccccccccc
Q 024334 216 RVMPDLCVICLEQEY----NAVFVPCGHMCCCIICSWHL------------TNCPLCRRRIDQ 262 (269)
Q Consensus 216 ~~~~~~C~IC~~~~~----~~v~lpCgH~~~C~~C~~~l------------~~CPiCR~~I~~ 262 (269)
......|.+|..... .----.||+++ |..|+... ..|-.|-..+.+
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~-C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIF-CGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEE-CTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEe-ChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 334568999986543 22334799998 99998642 256666655443
No 101
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.40 E-value=49 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.7
Q ss_pred ccccccccccccceEEeCCCCcccch
Q 024334 219 PDLCVICLEQEYNAVFVPCGHMCCCI 244 (269)
Q Consensus 219 ~~~C~IC~~~~~~~v~lpCgH~~~C~ 244 (269)
...|..|.......+-+-|||+. |.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vg-Cg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVY-CG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEE-EC
T ss_pred CCcCccccCCCCeeeeeecCccc-cC
Confidence 45799999998889999999998 74
No 102
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=21.23 E-value=46 Score=21.80 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=11.9
Q ss_pred CCccccccccceEEc
Q 024334 252 NCPLCRRRIDQVVRT 266 (269)
Q Consensus 252 ~CPiCR~~I~~~v~~ 266 (269)
.||+|...-..+.++
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 799999987777653
No 103
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=21.16 E-value=83 Score=27.46 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=49.7
Q ss_pred eeeeeeeEEeecCccc--ccccccccccceeeeeeeeeecccCCCceEEEeEEEEECCCCCeEEeCCCCC----CeEEee
Q 024334 59 FVLTVGSEVFEESGRS--LVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKG----PFYVSP 132 (269)
Q Consensus 59 ~~l~~v~~~f~~~~~s--~~~~~~~~l~g~~~~G~~~~E~vL~~G~~lt~vGel~~d~~g~~~iq~P~~g----~f~lS~ 132 (269)
..+.++.|..|..+.+ ..+.+..++. ..|+...-+.|++|..+-+.-.-..+..|. .++|... +|.+.+
T Consensus 18 ~~~~ivvD~RE~~~~~~~~~~~~~~~l~---~~gv~~~~~~L~vGDyiw~~~~~~~~~~~~--~~~~~~~e~vl~~~VER 92 (311)
T 2ziu_A 18 YDIVLCVDLCETTGGSSVRKQELVKELQ---RNSVTFDVRKLNVGDFLWVARERVTPVPGQ--LRPPVGKELVLDYIIER 92 (311)
T ss_dssp EEEEEEECGGGSCC-----CCHHHHHHH---TTTCCEECCCCSSCSEEEEEEECCCCCTTC--SSCCCCCEEEEEEEEEE
T ss_pred cEEEEEEECccccCCccchHHHHHHHHH---HCCCCeEEEecCccCEEEEEecCCCccccc--cccccCceeeeeeEeEe
Confidence 4577777777755432 2333444443 369999999999999986544311111111 1223222 489999
Q ss_pred CChHHHHHhHhHH
Q 024334 133 KTIDELIENLGKW 145 (269)
Q Consensus 133 ~s~d~Li~~l~~~ 145 (269)
++.++|+.++.+.
T Consensus 93 K~~~Dl~~Si~dg 105 (311)
T 2ziu_A 93 KRMDDLCGSIIDG 105 (311)
T ss_dssp EEHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcc
Confidence 9999999987654
No 104
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.10 E-value=44 Score=21.64 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.5
Q ss_pred CCccccccccceEE
Q 024334 252 NCPLCRRRIDQVVR 265 (269)
Q Consensus 252 ~CPiCR~~I~~~v~ 265 (269)
.||+|...-..+.+
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 78888887766654
No 105
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=20.81 E-value=44 Score=18.27 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=16.6
Q ss_pred ccccccccccceEEeCCCCcccchhh
Q 024334 221 LCVICLEQEYNAVFVPCGHMCCCIIC 246 (269)
Q Consensus 221 ~C~IC~~~~~~~v~lpCgH~~~C~~C 246 (269)
.|+-|.+--.-..=-+||..+.|..|
T Consensus 2 ~cvscv~fgngfcgdncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECSSSCEEECSCC
T ss_pred cceEeEeecCccccCCcCCcccccCC
Confidence 46667654444444578888877665
Done!