BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024335
         (269 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3U182|CRTC2_MOUSE CREB-regulated transcription coactivator 2 OS=Mus musculus GN=Crtc2
           PE=1 SV=2
          Length = 692

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 177 TRLKTCLYSFTSP-GGPMYPTRAVRHAAW------DALDFLFPVGQYPRHVISLFFRLLY 229
            ++   L  F SP   P+  +R+ RH         DA   + P+ +YPRH+ S  +   Y
Sbjct: 75  NQIGCGLAEFQSPLHSPLDSSRSTRHHGLVERVQRDARRMVSPLRRYPRHIDSSPYSPAY 134

Query: 230 PWCWPSSCWNFIMSW 244
               P S W  +M W
Sbjct: 135 LSPPPESGWRRMMPW 149


>sp|Q9Z2H2|RGS6_MOUSE Regulator of G-protein signaling 6 OS=Mus musculus GN=Rgs6 PE=1
           SV=2
          Length = 472

 Score = 33.1 bits (74), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 13/66 (19%)

Query: 206 ALDFLFPVGQYPRHVISL-----FFRLLYPWCWPSSCW-----NFIMSWLKAVLHTLLRV 255
           A  ++FP+     HV+++     F+R   P+ WPS+CW     ++ +   K  +    R+
Sbjct: 90  AQGYIFPISD---HVLTMKDDGTFYRFQAPYFWPSNCWEPENTDYAIYLCKRTMQNKARL 146

Query: 256 VFSSWE 261
             + +E
Sbjct: 147 ELADYE 152


>sp|P49758|RGS6_HUMAN Regulator of G-protein signaling 6 OS=Homo sapiens GN=RGS6 PE=1
           SV=5
          Length = 472

 Score = 33.1 bits (74), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 13/66 (19%)

Query: 206 ALDFLFPVGQYPRHVISL-----FFRLLYPWCWPSSCW-----NFIMSWLKAVLHTLLRV 255
           A  ++FP+     HV+++     F+R   P+ WPS+CW     ++ +   K  +    R+
Sbjct: 90  AQGYIFPISD---HVLTMKDDGTFYRFQAPYFWPSNCWEPENTDYAIYLCKRTMQNKARL 146

Query: 256 VFSSWE 261
             + +E
Sbjct: 147 ELADYE 152


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.140    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,133,145
Number of Sequences: 539616
Number of extensions: 3713948
Number of successful extensions: 8908
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8908
Number of HSP's gapped (non-prelim): 3
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)