Query 024340
Match_columns 269
No_of_seqs 207 out of 1407
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.5 9.7E-15 3.3E-19 110.4 7.1 77 37-134 7-84 (92)
2 1t1h_A Gspef-atpub14, armadill 99.5 1E-14 3.6E-19 106.9 4.7 72 39-133 4-75 (78)
3 2kre_A Ubiquitin conjugation f 99.5 5.1E-14 1.7E-18 109.2 7.8 75 37-135 23-97 (100)
4 2kr4_A Ubiquitin conjugation f 99.5 1.5E-14 5.1E-19 108.8 4.6 75 35-133 6-80 (85)
5 1wgm_A Ubiquitin conjugation f 99.5 6.6E-14 2.3E-18 108.2 7.1 75 36-134 15-90 (98)
6 2y43_A E3 ubiquitin-protein li 99.5 1.4E-14 4.8E-19 111.2 2.4 74 37-134 16-90 (99)
7 3lrq_A E3 ubiquitin-protein li 99.4 2E-14 6.9E-19 110.9 1.5 77 34-133 13-90 (100)
8 2csy_A Zinc finger protein 183 99.4 2E-13 6.9E-18 100.9 5.3 67 38-132 10-76 (81)
9 3fl2_A E3 ubiquitin-protein li 99.4 2.1E-13 7E-18 108.8 5.8 74 38-133 47-120 (124)
10 2ecw_A Tripartite motif-contai 99.4 5.6E-14 1.9E-18 103.7 1.5 68 37-122 13-80 (85)
11 2ct2_A Tripartite motif protei 99.4 2.5E-13 8.4E-18 101.3 3.9 71 37-121 9-79 (88)
12 2ecv_A Tripartite motif-contai 99.4 5.9E-14 2E-18 103.6 0.2 58 37-105 13-70 (85)
13 2yu4_A E3 SUMO-protein ligase 99.4 1.3E-12 4.6E-17 99.7 7.5 78 39-134 3-84 (94)
14 2djb_A Polycomb group ring fin 99.4 6.4E-13 2.2E-17 96.1 5.4 53 36-105 8-61 (72)
15 2egp_A Tripartite motif-contai 99.3 1.2E-14 4.2E-19 106.4 -4.3 59 37-105 6-64 (79)
16 1z6u_A NP95-like ring finger p 99.3 7.5E-13 2.6E-17 109.6 5.8 71 40-133 75-146 (150)
17 3l11_A E3 ubiquitin-protein li 99.3 2.2E-13 7.5E-18 107.2 1.8 81 34-130 6-86 (115)
18 2ckl_A Polycomb group ring fin 99.3 4.2E-13 1.4E-17 104.5 3.2 74 38-131 10-84 (108)
19 2ysl_A Tripartite motif-contai 99.3 1.1E-12 3.8E-17 94.6 5.1 56 36-105 13-68 (73)
20 1jm7_B BARD1, BRCA1-associated 99.3 2.2E-13 7.4E-18 107.8 0.8 72 35-132 14-86 (117)
21 2yur_A Retinoblastoma-binding 99.3 1.3E-12 4.3E-17 95.2 4.7 53 37-104 9-62 (74)
22 2ckl_B Ubiquitin ligase protei 99.3 1.3E-12 4.4E-17 109.1 4.9 75 37-133 48-123 (165)
23 2ysj_A Tripartite motif-contai 99.3 2.5E-12 8.4E-17 90.4 5.6 52 35-100 12-63 (63)
24 4ayc_A E3 ubiquitin-protein li 99.3 9.8E-13 3.4E-17 107.0 3.1 48 40-104 50-97 (138)
25 2ecy_A TNF receptor-associated 99.3 1.8E-12 6.3E-17 92.0 4.1 53 37-105 9-61 (66)
26 3ng2_A RNF4, snurf, ring finge 99.3 1.6E-12 5.3E-17 93.2 3.8 54 39-105 6-62 (71)
27 2c2l_A CHIP, carboxy terminus 99.3 3.2E-12 1.1E-16 113.7 6.3 72 39-133 204-275 (281)
28 2ea6_A Ring finger protein 4; 99.3 3E-12 1E-16 91.0 3.9 55 37-104 9-66 (69)
29 3hct_A TNF receptor-associated 99.2 4E-12 1.4E-16 100.6 4.8 72 37-131 12-83 (118)
30 2d8t_A Dactylidin, ring finger 99.2 2.2E-12 7.4E-17 93.0 2.7 50 39-105 11-60 (71)
31 1jm7_A BRCA1, breast cancer ty 99.2 1.4E-12 4.9E-17 101.5 1.5 54 38-105 16-69 (112)
32 2f42_A STIP1 homology and U-bo 99.2 8.7E-12 3E-16 106.2 6.2 74 37-133 100-173 (179)
33 2ect_A Ring finger protein 126 99.2 1.3E-11 4.6E-16 90.2 4.0 54 38-105 10-63 (78)
34 2ecj_A Tripartite motif-contai 99.2 1.1E-11 3.9E-16 85.2 3.2 38 37-78 9-46 (58)
35 1g25_A CDK-activating kinase a 99.2 1.8E-11 6.2E-16 86.6 4.1 52 42-105 2-54 (65)
36 2xeu_A Ring finger protein 4; 99.2 1.3E-11 4.3E-16 86.4 2.9 51 42-105 2-55 (64)
37 3htk_C E3 SUMO-protein ligase 99.1 3.7E-11 1.3E-15 107.6 6.1 78 32-131 170-250 (267)
38 2ecm_A Ring finger and CHY zin 99.1 3E-11 1E-15 82.3 4.2 50 42-104 4-53 (55)
39 1bor_A Transcription factor PM 99.1 9.1E-12 3.1E-16 86.1 0.7 46 40-105 3-48 (56)
40 2kiz_A E3 ubiquitin-protein li 99.1 6.1E-11 2.1E-15 84.6 5.1 54 38-105 9-62 (69)
41 3knv_A TNF receptor-associated 99.1 2.8E-11 9.6E-16 99.1 3.5 52 37-104 25-76 (141)
42 1rmd_A RAG1; V(D)J recombinati 99.1 2.3E-11 7.8E-16 95.7 2.8 70 39-131 19-89 (116)
43 3hcs_A TNF receptor-associated 99.1 5.1E-11 1.7E-15 99.7 4.8 72 37-131 12-83 (170)
44 1x4j_A Ring finger protein 38; 99.1 1E-10 3.5E-15 84.9 4.7 52 39-104 19-70 (75)
45 2ep4_A Ring finger protein 24; 99.1 6.7E-11 2.3E-15 85.5 3.5 55 37-105 9-63 (74)
46 1chc_A Equine herpes virus-1 r 99.0 1.1E-10 3.6E-15 83.0 3.3 48 41-105 3-51 (68)
47 1iym_A EL5; ring-H2 finger, ub 99.0 7.8E-11 2.7E-15 80.3 2.4 51 40-104 2-53 (55)
48 1e4u_A Transcriptional repress 99.0 9.7E-11 3.3E-15 86.7 3.0 55 37-105 5-61 (78)
49 2l0b_A E3 ubiquitin-protein li 99.0 2.3E-10 7.9E-15 86.5 3.6 52 39-104 36-87 (91)
50 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-10 5.3E-15 91.8 2.7 52 41-105 5-59 (133)
51 4ic3_A E3 ubiquitin-protein li 99.0 5.1E-11 1.7E-15 86.9 -0.3 50 35-105 16-66 (74)
52 2ecn_A Ring finger protein 141 98.9 9.5E-11 3.2E-15 83.8 0.2 51 37-105 9-59 (70)
53 2ecg_A Baculoviral IAP repeat- 98.9 1.6E-10 5.4E-15 84.3 1.1 51 34-105 16-67 (75)
54 1v87_A Deltex protein 2; ring- 98.9 6.1E-10 2.1E-14 87.0 3.7 56 42-105 24-93 (114)
55 2ecl_A Ring-box protein 2; RNF 98.8 2.7E-09 9.3E-14 79.0 4.5 50 42-104 14-74 (81)
56 4ap4_A E3 ubiquitin ligase RNF 98.8 1.7E-09 5.7E-14 85.7 2.7 56 37-105 66-124 (133)
57 2y1n_A E3 ubiquitin-protein li 98.7 6.6E-09 2.3E-13 98.0 4.2 50 40-105 329-378 (389)
58 2vje_A E3 ubiquitin-protein li 98.7 6.3E-09 2.1E-13 73.7 2.7 48 41-105 6-56 (64)
59 2ea5_A Cell growth regulator w 98.6 1.7E-08 5.9E-13 72.4 3.8 46 39-105 11-57 (68)
60 2vje_B MDM4 protein; proto-onc 98.6 1.1E-08 3.9E-13 72.2 2.7 48 41-105 5-55 (63)
61 1wim_A KIAA0161 protein; ring 98.6 6E-09 2E-13 78.9 1.1 53 42-103 4-61 (94)
62 2yho_A E3 ubiquitin-protein li 98.6 2.5E-09 8.4E-14 79.1 -1.3 48 37-105 12-60 (79)
63 3dpl_R Ring-box protein 1; ubi 98.6 2.1E-08 7.3E-13 78.2 3.7 50 42-104 36-99 (106)
64 3t6p_A Baculoviral IAP repeat- 98.5 1.3E-08 4.5E-13 94.7 0.9 49 36-105 288-337 (345)
65 2bay_A PRE-mRNA splicing facto 98.5 7.3E-08 2.5E-12 67.8 3.0 46 43-105 3-49 (61)
66 2d8s_A Cellular modulator of i 98.5 1.7E-07 5.8E-12 69.4 5.0 52 41-105 13-69 (80)
67 4a0k_B E3 ubiquitin-protein li 98.4 2.8E-08 9.6E-13 79.0 -0.8 50 42-104 47-110 (117)
68 2ct0_A Non-SMC element 1 homol 97.9 4.4E-06 1.5E-10 61.0 2.5 51 41-105 13-63 (74)
69 3k1l_B Fancl; UBC, ring, RWD, 97.6 2.8E-05 9.5E-10 72.1 4.0 64 40-105 305-372 (381)
70 3vk6_A E3 ubiquitin-protein li 97.6 3.6E-05 1.2E-09 59.0 3.4 48 45-107 3-50 (101)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.4 0.00011 3.8E-09 51.2 3.6 49 41-104 4-57 (60)
72 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0016 5.4E-08 49.2 1.6 32 42-77 2-36 (101)
73 2ko5_A Ring finger protein Z; 95.7 0.007 2.4E-07 45.8 3.4 48 38-104 23-71 (99)
74 3m62_A Ubiquitin conjugation f 95.6 0.007 2.4E-07 62.7 3.9 75 37-135 885-960 (968)
75 3nw0_A Non-structural maintena 94.4 0.029 9.8E-07 49.3 4.0 49 42-105 179-228 (238)
76 3i2d_A E3 SUMO-protein ligase 86.9 0.17 5.9E-06 47.1 1.0 70 38-129 244-316 (371)
77 2cs3_A Protein C14ORF4, MY039 86.6 0.49 1.7E-05 34.7 3.1 39 41-83 13-55 (93)
78 4fo9_A E3 SUMO-protein ligase 82.1 0.88 3E-05 42.2 3.5 70 38-129 210-282 (360)
79 1vfy_A Phosphatidylinositol-3- 55.0 6.2 0.00021 27.7 2.1 31 44-75 12-43 (73)
80 2zet_C Melanophilin; complex, 52.5 8.2 0.00028 31.3 2.7 50 42-103 67-117 (153)
81 3mjh_B Early endosome antigen 52.1 3.6 0.00012 25.0 0.4 15 41-55 3-17 (34)
82 3t7l_A Zinc finger FYVE domain 51.2 6.1 0.00021 28.9 1.6 34 42-76 19-53 (90)
83 1z2q_A LM5-1; membrane protein 50.2 7.5 0.00026 28.0 1.9 34 42-76 20-54 (84)
84 2jne_A Hypothetical protein YF 50.0 1.3 4.6E-05 33.5 -2.2 40 44-105 33-72 (101)
85 2yw8_A RUN and FYVE domain-con 49.0 7.6 0.00026 27.8 1.8 34 42-76 18-52 (82)
86 1weu_A Inhibitor of growth fam 48.8 28 0.00095 25.7 4.9 48 40-103 33-85 (91)
87 1wfk_A Zinc finger, FYVE domai 48.5 7 0.00024 28.6 1.5 35 41-76 7-42 (88)
88 1zbd_B Rabphilin-3A; G protein 46.7 8.9 0.0003 30.4 2.0 54 41-103 53-107 (134)
89 1joc_A EEA1, early endosomal a 45.6 8.2 0.00028 30.1 1.6 34 42-76 68-102 (125)
90 1x4u_A Zinc finger, FYVE domai 44.9 9.6 0.00033 27.4 1.8 34 42-76 13-47 (84)
91 2ct7_A Ring finger protein 31; 44.4 11 0.00038 27.1 2.1 33 45-77 27-61 (86)
92 1weo_A Cellulose synthase, cat 42.8 23 0.00079 26.3 3.5 51 42-104 15-68 (93)
93 2k16_A Transcription initiatio 42.6 22 0.00077 24.6 3.4 53 40-104 15-69 (75)
94 3zyq_A Hepatocyte growth facto 39.5 12 0.00041 31.9 1.8 35 41-76 162-197 (226)
95 2lri_C Autoimmune regulator; Z 39.4 12 0.00042 25.8 1.5 47 42-103 11-59 (66)
96 2o35_A Hypothetical protein DU 39.3 11 0.00039 28.4 1.4 15 68-82 42-56 (105)
97 1y02_A CARP2, FYVE-ring finger 39.0 9.4 0.00032 29.7 1.0 34 42-76 18-52 (120)
98 3fyb_A Protein of unknown func 38.5 12 0.00041 28.3 1.4 14 68-81 41-54 (104)
99 1dvp_A HRS, hepatocyte growth 37.8 13 0.00044 31.4 1.8 35 41-76 159-194 (220)
100 2jmo_A Parkin; IBR, E3 ligase, 37.2 3.9 0.00013 29.4 -1.4 35 43-77 25-68 (80)
101 2gsm_B Cytochrome C oxidase su 35.4 56 0.0019 28.5 5.6 18 245-262 80-97 (262)
102 1wfl_A Zinc finger protein 216 35.1 42 0.0014 23.9 3.8 31 39-72 21-51 (74)
103 1f62_A Transcription factor WS 33.8 31 0.0011 21.9 2.8 47 45-103 2-50 (51)
104 2lv9_A Histone-lysine N-methyl 33.0 33 0.0011 25.3 3.2 47 41-102 26-75 (98)
105 4rxn_A Rubredoxin; electron tr 33.0 31 0.0011 23.0 2.7 13 43-55 3-15 (54)
106 2l5u_A Chromodomain-helicase-D 32.7 49 0.0017 22.0 3.8 47 41-102 9-57 (61)
107 2e6r_A Jumonji/ARID domain-con 32.1 13 0.00045 27.3 0.7 53 38-102 11-65 (92)
108 2kn9_A Rubredoxin; metalloprot 31.8 36 0.0012 24.6 3.0 14 42-55 26-39 (81)
109 1e8j_A Rubredoxin; iron-sulfur 30.9 52 0.0018 21.6 3.5 13 43-55 3-15 (52)
110 1dx8_A Rubredoxin; electron tr 30.5 42 0.0014 23.5 3.2 14 42-55 6-19 (70)
111 1wil_A KIAA1045 protein; ring 29.8 31 0.001 25.4 2.4 61 41-103 13-76 (89)
112 1s24_A Rubredoxin 2; electron 29.7 33 0.0011 25.1 2.6 15 41-55 33-47 (87)
113 2jxf_A NS4B(40-69), genome pol 29.2 7 0.00024 22.8 -0.9 7 1-7 15-21 (30)
114 2lbm_A Transcriptional regulat 28.0 52 0.0018 26.2 3.7 53 42-102 62-116 (142)
115 3mpx_A FYVE, rhogef and PH dom 26.4 14 0.00047 34.0 0.0 35 41-76 373-408 (434)
116 1v54_B Cytochrome C oxidase po 26.1 88 0.003 26.6 5.1 16 246-261 67-82 (227)
117 1mm2_A MI2-beta; PHD, zinc fin 25.2 37 0.0013 22.7 2.1 48 41-103 7-56 (61)
118 1wd2_A Ariadne-1 protein homol 25.1 6.7 0.00023 26.7 -1.8 35 43-77 6-44 (60)
119 1x62_A C-terminal LIM domain p 24.5 45 0.0015 22.9 2.5 29 42-74 14-42 (79)
120 1wen_A Inhibitor of growth fam 24.0 79 0.0027 21.8 3.7 47 41-103 14-65 (71)
121 6rxn_A Rubredoxin; electron tr 24.0 46 0.0016 21.4 2.2 14 42-55 3-16 (46)
122 3hb3_B Cytochrome C oxidase su 24.0 1.1E+02 0.0039 27.2 5.6 21 243-263 109-129 (298)
123 3ql9_A Transcriptional regulat 23.8 92 0.0031 24.3 4.4 48 42-102 56-110 (129)
124 2gmg_A Hypothetical protein PF 23.2 30 0.001 26.3 1.3 9 96-104 86-94 (105)
125 2lce_A B-cell lymphoma 6 prote 23.1 95 0.0032 20.1 3.9 16 40-55 14-29 (74)
126 3u5n_A E3 ubiquitin-protein li 22.1 55 0.0019 27.2 2.9 48 42-104 6-55 (207)
127 1m3v_A FLIN4, fusion of the LI 22.0 41 0.0014 25.3 2.0 51 41-105 30-80 (122)
128 2yql_A PHD finger protein 21A; 22.0 27 0.00091 22.9 0.8 47 40-101 6-54 (56)
129 1scf_A Stem cell factor; steel 21.8 44 0.0015 29.2 2.3 17 210-226 220-236 (273)
130 2dar_A PDZ and LIM domain prot 21.7 84 0.0029 22.0 3.5 30 41-74 23-52 (90)
131 1fp0_A KAP-1 corepressor; PHD 21.5 66 0.0023 23.5 2.9 49 39-102 21-71 (88)
132 1wfp_A Zinc finger (AN1-like) 21.2 77 0.0026 22.5 3.1 30 40-72 22-51 (74)
133 1wg2_A Zinc finger (AN1-like) 21.1 63 0.0021 22.3 2.5 29 41-72 13-41 (64)
134 2xjy_A Rhombotin-2; oncoprotei 20.6 57 0.002 24.5 2.6 50 41-104 27-76 (131)
135 1we9_A PHD finger family prote 20.5 55 0.0019 21.7 2.2 54 40-103 3-58 (64)
136 2rgt_A Fusion of LIM/homeobox 20.3 74 0.0025 25.2 3.3 33 41-77 31-63 (169)
137 2jrp_A Putative cytoplasmic pr 20.3 7 0.00024 28.5 -2.6 12 44-55 3-14 (81)
138 3o70_A PHD finger protein 13; 20.3 43 0.0015 23.0 1.6 48 40-102 16-66 (68)
139 2xqn_T Testin, TESS; metal-bin 20.0 66 0.0023 24.0 2.8 47 41-105 28-74 (126)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.54 E-value=9.7e-15 Score=110.37 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=62.9
Q ss_pred ccCCCCccccccccccccccCCCcEEec-CCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 115 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~ 115 (269)
.+.+++.++|+||++.|.+ |++++ |||+||..||.+|+.... ...||.||..+. ....
T Consensus 7 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~-----------~~~CP~Cr~~~~------~~~~ 65 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESD-----------EHTCPTCHQNDV------SPDA 65 (92)
T ss_dssp CCCCCTTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCT-----------TCCCTTTCCSSC------CTTS
T ss_pred cccCCcCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcC-----------CCcCcCCCCcCC------Cccc
Confidence 4567789999999999999 99999 999999999999854322 126999998752 1457
Q ss_pred CcchHHHHHHHHHHhcccC
Q 024340 116 PQKNYYLLWMVESMNGDRS 134 (269)
Q Consensus 116 ~~~N~~l~~lve~~~~~~~ 134 (269)
+..|..+.++++.++....
T Consensus 66 ~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 66 LIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CEECHHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHHHh
Confidence 8899999999999887653
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.50 E-value=1e-14 Score=106.92 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=60.7
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCCcc
Q 024340 39 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQK 118 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~ 118 (269)
.+.+.+.|+||++.|.+ |++++|||+||+.|+.+|+... ...||.||..+. ...+..
T Consensus 4 ~~~~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~------------~~~CP~C~~~~~-------~~~l~~ 60 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAG------------HKTCPKSQETLL-------HAGLTP 60 (78)
T ss_dssp CCSSSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTT------------CCBCTTTCCBCS-------SCCCEE
T ss_pred CCcccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHC------------cCCCCCCcCCCC-------hhhCcc
Confidence 45789999999999999 9999999999999999985421 127999999875 567888
Q ss_pred hHHHHHHHHHHhccc
Q 024340 119 NYYLLWMVESMNGDR 133 (269)
Q Consensus 119 N~~l~~lve~~~~~~ 133 (269)
|..+.++++.+.+..
T Consensus 61 n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 61 NYVLKSLIALWCESN 75 (78)
T ss_dssp CTTTHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999887654
No 3
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.49 E-value=5.1e-14 Score=109.18 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=63.8
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 116 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 116 (269)
...+.+.+.||||+++|.+ |++++|||+||+.||..|+ ... ..||.||.... ..++
T Consensus 23 ~~~~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l-~~~------------~~cP~~~~~l~-------~~~L 78 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTD----PVRLPSGTIMDRSIILRHL-LNS------------PTDPFNRQTLT-------ESML 78 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSS----EEEETTTEEEEHHHHHHHT-TSC------------SBCSSSCCBCC-------TTSS
T ss_pred hccCcHhhCCcCccCcccC----CeECCCCCEEchHHHHHHH-HcC------------CCCCCCCCCCC-------hhhc
Confidence 4566889999999999999 9999999999999999984 321 16999999875 5788
Q ss_pred cchHHHHHHHHHHhcccCC
Q 024340 117 QKNYYLLWMVESMNGDRSK 135 (269)
Q Consensus 117 ~~N~~l~~lve~~~~~~~~ 135 (269)
..|..+.++++.+...+.+
T Consensus 79 ~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 79 EPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp EECHHHHHHHHHHHHTTTC
T ss_pred eECHHHHHHHHHHHHHhhh
Confidence 9999999999999876543
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.49 E-value=1.5e-14 Score=108.82 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=63.2
Q ss_pred ccccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCC
Q 024340 35 SLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 114 (269)
Q Consensus 35 s~~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~ 114 (269)
.....+.+.+.||||+++|.+ |++++|||+||+.||.+|+.. . . .||.||.... ..
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~-~--~----------~cP~~~~~l~-------~~ 61 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLLN-S--P----------TDPFNRQMLT-------ES 61 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHH-C--S----------BCTTTCCBCC-------GG
T ss_pred hhhhcCchheECcccCchhcC----CeECCCCCEECHHHHHHHHhc-C--C----------CCCCCcCCCC-------hH
Confidence 334567789999999999999 999999999999999999543 2 1 6999999865 56
Q ss_pred CCcchHHHHHHHHHHhccc
Q 024340 115 FPQKNYYLLWMVESMNGDR 133 (269)
Q Consensus 115 ~~~~N~~l~~lve~~~~~~ 133 (269)
.+..|..+.++++.+...+
T Consensus 62 ~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 62 MLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp GCEECHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHh
Confidence 7889999999999887654
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.47 E-value=6.6e-14 Score=108.17 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=63.6
Q ss_pred cccCCCCccccccccccccccCCCcEEecCC-CcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCC
Q 024340 36 LNNSREEGLECPICWESFNVVENLPYVLWCG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 114 (269)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CG-HtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~ 114 (269)
....+.+++.||||+++|.+ |++++|| |+||+.||.+|+.. . . .||.||+... ..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~-~--~----------~cP~~~~~l~-------~~ 70 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLS-D--Q----------TDPFNRSPLT-------MD 70 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTT-S--C----------BCTTTCSBCC-------TT
T ss_pred hhhcCcHhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHh-C--C----------CCCCCCCCCC-------hh
Confidence 34566789999999999999 9999999 99999999998432 1 1 6999999875 57
Q ss_pred CCcchHHHHHHHHHHhcccC
Q 024340 115 FPQKNYYLLWMVESMNGDRS 134 (269)
Q Consensus 115 ~~~~N~~l~~lve~~~~~~~ 134 (269)
++..|..++++++.+...+.
T Consensus 71 ~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 71 QIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp TSEECHHHHHHHHHHHHHST
T ss_pred hceEcHHHHHHHHHHHHHcc
Confidence 88999999999999886654
No 6
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=111.16 Aligned_cols=74 Identities=27% Similarity=0.519 Sum_probs=61.7
Q ss_pred ccCCCCccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 115 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~ 115 (269)
.+.+++.++|+||++.|.+ |+++ +|||+||..|+.+|.... ..||.||..+. ..+
T Consensus 16 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~-------------~~CP~Cr~~~~-------~~~ 71 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLSYK-------------TQCPTCCVTVT-------EPD 71 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTC-------------CBCTTTCCBCC-------GGG
T ss_pred HHhCCCCCCcccCChhhCC----cCEECCCCCHhhHHHHHHHHHCC-------------CCCCCCCCcCC-------hhh
Confidence 4455788999999999999 9999 899999999999985432 16999999875 466
Q ss_pred CcchHHHHHHHHHHhcccC
Q 024340 116 PQKNYYLLWMVESMNGDRS 134 (269)
Q Consensus 116 ~~~N~~l~~lve~~~~~~~ 134 (269)
+..|..+.++++.+++.+.
T Consensus 72 l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 72 LKNNRILDELVKSLNFARN 90 (99)
T ss_dssp CEECHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 8899999999998886553
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.43 E-value=2e-14 Score=110.93 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=61.7
Q ss_pred hccccCCCCccccccccccccccCCCcEE-ecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCC
Q 024340 34 ASLNNSREEGLECPICWESFNVVENLPYV-LWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGN 112 (269)
Q Consensus 34 ~s~~~~lee~l~CpICl~~f~~~~~~P~~-L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~ 112 (269)
......+++.++|+||++.|.+ |+. ++|||+||..||.+|+.... ..||.||..+.
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~----p~~~~~CgH~FC~~Ci~~~~~~~~------------~~CP~Cr~~~~------- 69 (100)
T 3lrq_A 13 EQSVESIAEVFRCFICMEKLRD----ARLCPHCSKLCCFSCIRRWLTEQR------------AQCPHCRAPLQ------- 69 (100)
T ss_dssp HHHHHHHHHHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHHHTC------------SBCTTTCCBCC-------
T ss_pred ccccccCCCCCCCccCCccccC----ccccCCCCChhhHHHHHHHHHHCc------------CCCCCCCCcCC-------
Confidence 3445677899999999999999 999 89999999999999865431 16999999875
Q ss_pred CCCCcchHHHHHHHHHHhccc
Q 024340 113 LKFPQKNYYLLWMVESMNGDR 133 (269)
Q Consensus 113 ~~~~~~N~~l~~lve~~~~~~ 133 (269)
...+..|..+.++++.++.-+
T Consensus 70 ~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 70 LRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp GGGCEECTTHHHHHHHHHHHC
T ss_pred HHHhHhhHHHHHHHHHHHHHH
Confidence 566777887778877766544
No 8
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=100.90 Aligned_cols=67 Identities=24% Similarity=0.471 Sum_probs=51.3
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCCc
Q 024340 38 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQ 117 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~~ 117 (269)
+..++.+.|+||++.+.+ |++++|||+||..|+.+|+.... .||.||..+. ..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~-------------~CP~Cr~~~~--------~~~~ 64 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFRATP-------------RCYICDQPTG--------GIFN 64 (81)
T ss_dssp SCCCCCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHHHCS-------------BCSSSCCBCC--------SCCE
T ss_pred ccCCCCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHHCCC-------------cCCCcCcccc--------ccCC
Confidence 345678999999999999 99999999999999999865422 6999998763 3455
Q ss_pred chHHHHHHHHHHhcc
Q 024340 118 KNYYLLWMVESMNGD 132 (269)
Q Consensus 118 ~N~~l~~lve~~~~~ 132 (269)
.|. .+++.++..
T Consensus 65 ~~~---~l~~~~~~~ 76 (81)
T 2csy_A 65 PAK---ELMAKLQKS 76 (81)
T ss_dssp ECH---HHHHHHSSS
T ss_pred cHH---HHHHHHHhh
Confidence 664 445555443
No 9
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=108.83 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=60.0
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCCc
Q 024340 38 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQ 117 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~~ 117 (269)
..+++.++|+||++.|.+ |++++|||+||..|+.+|+... ...||.||..+. ....+.
T Consensus 47 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~------~~~~~~ 104 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQ------------VFSCPACRYDLG------RSYAMQ 104 (124)
T ss_dssp HHHHHHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTT------------CCBCTTTCCBCC------TTCCCC
T ss_pred HhCccCCCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHC------------cCCCCCCCccCC------CCCCCC
Confidence 455678999999999999 9999999999999999985421 226999999864 125678
Q ss_pred chHHHHHHHHHHhccc
Q 024340 118 KNYYLLWMVESMNGDR 133 (269)
Q Consensus 118 ~N~~l~~lve~~~~~~ 133 (269)
.|..+.++++.+....
T Consensus 105 ~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 105 VNQPLQTVLNQLFPGY 120 (124)
T ss_dssp CCHHHHHHHHHHSTTT
T ss_pred CCHHHHHHHHHHcccc
Confidence 9999999999876543
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=5.6e-14 Score=103.74 Aligned_cols=68 Identities=22% Similarity=0.399 Sum_probs=51.2
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 116 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 116 (269)
.+.+++.++|+||++.+.+ |++++|||+||..|+..|....... .+...||.||..+. ...+
T Consensus 13 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~-------~~~~~CP~Cr~~~~-------~~~~ 74 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNT-------DGKGNCPVCRVPYP-------FGNL 74 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSS----CEECTTSCCBCHHHHHHHHHHSBCT-------TSCBCCTTTCCCCC-------TTCC
T ss_pred HHhCccCCCCcCCChhhCc----ceeCCCCCHHHHHHHHHHHHhccCC-------CCCCCCCCCCCcCC-------HHhC
Confidence 4556788999999999999 9999999999999999986543210 11347999999865 4455
Q ss_pred cchHHH
Q 024340 117 QKNYYL 122 (269)
Q Consensus 117 ~~N~~l 122 (269)
..|..+
T Consensus 75 ~~n~~l 80 (85)
T 2ecw_A 75 KPNLHV 80 (85)
T ss_dssp EECSCC
T ss_pred CcCHHH
Confidence 555443
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.5e-13 Score=101.28 Aligned_cols=71 Identities=35% Similarity=0.686 Sum_probs=54.0
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 116 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 116 (269)
.+.+++.++|+||++.|.+.++.|++++|||+||..|+.+|+.... ....||.||..+. ......+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~----------~~~~CP~Cr~~~~----~~~i~~l 74 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI----------NGVRCPFCSKITR----ITSLTQL 74 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS----------SCBCCTTTCCCBC----CSSTTTS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC----------CCcCCCCCCCccc----chhHHHH
Confidence 3566788999999999999888899999999999999999865431 1237999998753 2234455
Q ss_pred cchHH
Q 024340 117 QKNYY 121 (269)
Q Consensus 117 ~~N~~ 121 (269)
..|+.
T Consensus 75 ~~n~~ 79 (88)
T 2ct2_A 75 TDNLT 79 (88)
T ss_dssp EECTT
T ss_pred HHHHH
Confidence 55543
No 12
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.9e-14 Score=103.62 Aligned_cols=58 Identities=28% Similarity=0.610 Sum_probs=46.1
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
...+++.++|+||++.+.+ |++++|||+||..|+..|........ +...||.||..+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~-------~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDK-------GESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTT-------SCCCCTTTCCSSC
T ss_pred HHHccCCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCC-------CCCcCCCCCCccC
Confidence 3566788999999999999 99999999999999999865522111 1337999999865
No 13
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=99.74 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=61.7
Q ss_pred CCCCccccccccccccccCCCcEEec-CCCcchHhhHHHHHHhhccCCCCCCCCCCcccccc--CCcc-cccccccCCCC
Q 024340 39 SREEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPW--CNMV-SLRLICKGNLK 114 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~--CR~~-~~~~~~~~~~~ 114 (269)
...+.+.||||+++|.+ |++++ |||+||+.||..|+....... +...||. |+.. +. ..
T Consensus 3 ~~~~~~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~l~~~~~~~-------~~~~CP~tgc~~~~l~-------~~ 64 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKK----PVKNKVCGHTYEEDAIVRMIESRQKRK-------KKAYCPQIGCSHTDIR-------KS 64 (94)
T ss_dssp SCSSCCBCTTTCSBCSS----EEEESSSCCEEEHHHHHHHHHHHHTTT-------CCBCCCSTTCCCCCBC-------GG
T ss_pred CCCcEeECcCcCchhcC----CEEcCCCCCeecHHHHHHHHHHccCcC-------CCCCCCcCcCcccccC-------Hh
Confidence 34678999999999999 99995 999999999999965432100 1347999 9865 43 56
Q ss_pred CCcchHHHHHHHHHHhcccC
Q 024340 115 FPQKNYYLLWMVESMNGDRS 134 (269)
Q Consensus 115 ~~~~N~~l~~lve~~~~~~~ 134 (269)
++..|..+..+++.++....
T Consensus 65 ~L~pn~~L~~~I~~~~~~~~ 84 (94)
T 2yu4_A 65 DLIQDEALRRAIENHNKKRH 84 (94)
T ss_dssp GEEECHHHHHHHHHHHTTCC
T ss_pred hCcCCHHHHHHHHHHHHHhc
Confidence 78899999999999986654
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.4e-13 Score=96.13 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=45.4
Q ss_pred cccCCCCccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 36 LNNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
..+.+++.++|+||++.+.+ |+++ +|||+||..|+.+|+.... .||.||+.+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~-------------~CP~Cr~~~~ 61 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLID----ATTITECLHTFCKSCIVRHFYYSN-------------RCPKCNIVVH 61 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHHHCS-------------SCTTTCCCCC
T ss_pred hHhhcCCCCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHHcCC-------------cCCCcCcccC
Confidence 34667889999999999999 9998 9999999999999865422 6999999864
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-14 Score=106.42 Aligned_cols=59 Identities=29% Similarity=0.701 Sum_probs=45.7
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.+.+++.++|+||++.|.+ |++++|||+||..|+.+|...... ...+...||.||..+.
T Consensus 6 ~~~~~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~------~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTE----PLSLDCGHSLCRACITVSNKEAVT------SMGGKSSCPVCGISYS 64 (79)
T ss_dssp SCCCCCCCEETTTTEECSS----CCCCSSSCCCCHHHHSCCCCCCSS------SCCCCCCCSSSCCCCC
T ss_pred HhhcccCCCCcCCCcccCC----eeECCCCCHHHHHHHHHHHHhccc------CCCCCCcCCCCCCcCC
Confidence 4567789999999999999 999999999999999987432110 0012447999999865
No 16
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.34 E-value=7.5e-13 Score=109.60 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=59.2
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCC-CCcc
Q 024340 40 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK-FPQK 118 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~-~~~~ 118 (269)
+++.+.|+||++.|.+ |++++|||+||..|+.+|+... ...||.||..+. .. .+..
T Consensus 75 l~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~-------~~~~l~~ 131 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQ------------VFSCPACRHDLG-------QNYIMIP 131 (150)
T ss_dssp HHHHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTT------------CCBCTTTCCBCC-------TTCCCCB
T ss_pred CccCCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhC------------CCcCCCCCccCC-------CCCCCCC
Confidence 4577899999999999 9999999999999999986531 226999999864 33 7789
Q ss_pred hHHHHHHHHHHhccc
Q 024340 119 NYYLLWMVESMNGDR 133 (269)
Q Consensus 119 N~~l~~lve~~~~~~ 133 (269)
|..+.++++.+....
T Consensus 132 n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 132 NEILQTLLDLFFPGY 146 (150)
T ss_dssp CHHHHHHHHHHSTTT
T ss_pred CHHHHHHHHHHhhHh
Confidence 999999999887544
No 17
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.33 E-value=2.2e-13 Score=107.18 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=57.7
Q ss_pred hccccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCC
Q 024340 34 ASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNL 113 (269)
Q Consensus 34 ~s~~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~ 113 (269)
.......+++++|+||++.+.+ |++++|||+||..|+.+|+... ...||.||..+.........
T Consensus 6 ~~~~~~~~~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~~~~~~~~~ 69 (115)
T 3l11_A 6 PKDAIPSLSECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKA------------SLCCPFCRRRVSSWTRYHTR 69 (115)
T ss_dssp CTTCCCCHHHHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTT------------TSBCTTTCCBCHHHHHHHHH
T ss_pred cccccCCCCCCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHC------------cCCCCCCCcccCcccccccc
Confidence 3344566789999999999999 9999999999999999874221 23799999986410000112
Q ss_pred CCCcchHHHHHHHHHHh
Q 024340 114 KFPQKNYYLLWMVESMN 130 (269)
Q Consensus 114 ~~~~~N~~l~~lve~~~ 130 (269)
.....|..+.++++++.
T Consensus 70 ~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 70 RNSLVNVELWTIIQKHY 86 (115)
T ss_dssp TTCCBCHHHHHHHHHHS
T ss_pred ccchhhHHHHHHHHHHC
Confidence 45567788888876653
No 18
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.33 E-value=4.2e-13 Score=104.53 Aligned_cols=74 Identities=20% Similarity=0.367 Sum_probs=58.0
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCC
Q 024340 38 NSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 116 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 116 (269)
+.+++.++|+||++.|.+ |+++ +|||+||..|+.+|+... ..||.||..+.. ......+
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~-------------~~CP~Cr~~~~~---~~~~~~l 69 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLETS-------------KYCPICDVQVHK---TRPLLNI 69 (108)
T ss_dssp HHHGGGTBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHTSC-------------SBCTTTCCBSCS---SCGGGGE
T ss_pred hccCCcCCCccCChHHhC----cCEeCCCCChhhHHHHHHHHHhC-------------CcCcCCCccccc---cCccccc
Confidence 456789999999999999 9998 999999999999985432 279999998641 1112256
Q ss_pred cchHHHHHHHHHHhc
Q 024340 117 QKNYYLLWMVESMNG 131 (269)
Q Consensus 117 ~~N~~l~~lve~~~~ 131 (269)
..|..+.++++.+..
T Consensus 70 ~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 70 RSDKTLQDIVYKLVP 84 (108)
T ss_dssp EECHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHhh
Confidence 789999999987754
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=94.58 Aligned_cols=56 Identities=29% Similarity=0.736 Sum_probs=45.3
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 36 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
..+.+++.++|+||++.+.+ |++++|||+||..|+.+|..... ....||.||+.+.
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~----------~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSC----------GFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSS----EEECTTCCEEEHHHHHHHCSSSC----------SCCCCSSSCCCCC
T ss_pred HHHhCccCCEeccCCcccCC----eEEcCCCChhhHHHHHHHHHcCC----------CCCCCCCCCCcCC
Confidence 34567789999999999999 99999999999999999843111 1337999998764
No 20
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=2.2e-13 Score=107.83 Aligned_cols=72 Identities=25% Similarity=0.398 Sum_probs=60.4
Q ss_pred ccccCCCCccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCC
Q 024340 35 SLNNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNL 113 (269)
Q Consensus 35 s~~~~lee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~ 113 (269)
+....+++.++|+||++.|.+ |+++ +|||+||..|+.+|.. . .||.||..+. .
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~--~-------------~CP~Cr~~~~-------~ 67 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG--T-------------GCPVCYTPAW-------I 67 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT--T-------------BCSSSCCBCS-------C
T ss_pred HHHHhchhCCCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc--C-------------CCcCCCCcCc-------c
Confidence 344566789999999999999 9999 9999999999999732 1 6999999865 5
Q ss_pred CCCcchHHHHHHHHHHhcc
Q 024340 114 KFPQKNYYLLWMVESMNGD 132 (269)
Q Consensus 114 ~~~~~N~~l~~lve~~~~~ 132 (269)
..+..|..+.++++.+++.
T Consensus 68 ~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 68 QDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp SSCCCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 6788899999999877643
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=95.21 Aligned_cols=53 Identities=25% Similarity=0.528 Sum_probs=44.6
Q ss_pred ccCCCCccccccccccccccCCCcEEec-CCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
.+.+++.++|+||++.|.+ |++++ |||+||..||.+|+.... ...||.||+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~-----------~~~CP~Cr~~~ 62 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESD-----------EHTCPTCHQND 62 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSS-----------SSCCSSSCCSS
T ss_pred cccCCCCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcC-----------CCcCCCCCCcC
Confidence 4567789999999999999 99999 999999999999865421 12699999864
No 22
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.30 E-value=1.3e-12 Score=109.08 Aligned_cols=75 Identities=20% Similarity=0.422 Sum_probs=58.4
Q ss_pred ccCCCCccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 115 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~ 115 (269)
...+++.+.|+||++.|.+ |+++ +|||+||..|+..|+.... ..||.||..+. ....
T Consensus 48 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~------------~~CP~Cr~~~~------~~~~ 105 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKN----TMTTKECLHRFCADCIITALRSGN------------KECPTCRKKLV------SKRS 105 (165)
T ss_dssp --CCHHHHBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHHTTC------------CBCTTTCCBCC------SGGG
T ss_pred hhhCCCCCCCcccChHhhC----cCEeCCCCChhHHHHHHHHHHhCc------------CCCCCCCCcCC------Cccc
Confidence 4566788999999999999 9998 9999999999999865311 26999998763 1345
Q ss_pred CcchHHHHHHHHHHhccc
Q 024340 116 PQKNYYLLWMVESMNGDR 133 (269)
Q Consensus 116 ~~~N~~l~~lve~~~~~~ 133 (269)
+..|..+.++++.+....
T Consensus 106 l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 106 LRPDPNFDALISKIYPSR 123 (165)
T ss_dssp EEECHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHcch
Confidence 788999999999887654
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=90.44 Aligned_cols=52 Identities=31% Similarity=0.846 Sum_probs=42.6
Q ss_pred ccccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccC
Q 024340 35 SLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 100 (269)
Q Consensus 35 s~~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~C 100 (269)
...+.+++.++|+||++.+.+ |++++|||+||..|+.+|+..... ...||.|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~----------~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCG----------FFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSS----------CCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCC----------CCcCcCC
Confidence 345667889999999999999 999999999999999999653211 2269998
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.28 E-value=9.8e-13 Score=106.99 Aligned_cols=48 Identities=33% Similarity=0.695 Sum_probs=41.1
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 40 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
++++++|+||++.|.+ |++++|||+||..|+..|..... .||.||..+
T Consensus 50 ~~~~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~ 97 (138)
T 4ayc_A 50 LENELQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKI-------------ECPICRKDI 97 (138)
T ss_dssp HHHHSBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTTCS-------------BCTTTCCBC
T ss_pred ccccCCCcccCcccCC----ceECCCCCCccHHHHHHHHHcCC-------------cCCCCCCcC
Confidence 4567899999999999 99999999999999999843221 699999875
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=92.03 Aligned_cols=53 Identities=23% Similarity=0.529 Sum_probs=44.1
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.+.+++.++|+||++.+.+ |++++|||+||..|+.+|+... ...||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCS----PKQTECGHRFCESCMAALLSSS------------SPKCTACQESIV 61 (66)
T ss_dssp CCSCCCCEECTTTCCEESS----CCCCSSSCCCCHHHHHHHHTTS------------SCCCTTTCCCCC
T ss_pred hhcCCcCCCCCCCChHhcC----eeECCCCCHHHHHHHHHHHHhC------------cCCCCCCCcCCC
Confidence 4566789999999999999 9999999999999999985321 126999998753
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1.6e-12 Score=93.19 Aligned_cols=54 Identities=26% Similarity=0.642 Sum_probs=42.9
Q ss_pred CCCCcccccccccccccc---CCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 39 SREEGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
..++..+|+||++.+.+. ++.++.++|||+||..|+.+|+.... .||.||..+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-------------BCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-------------CCCCCCCccC
Confidence 445788999999999981 12228889999999999999865432 6999999864
No 27
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.28 E-value=3.2e-12 Score=113.67 Aligned_cols=72 Identities=13% Similarity=0.005 Sum_probs=60.9
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCCcc
Q 024340 39 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQK 118 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~ 118 (269)
...+.+.||||+++|.+ |++++|||+||+.||.+|+.... ..||.||.... ...+..
T Consensus 204 ~~~~~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~~~------------~~cP~~~~~~~-------~~~l~~ 260 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVG------------HFNPVTRSPLT-------QEQLIP 260 (281)
T ss_dssp CCCSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTC------------SSCTTTCCCCC-------GGGCEE
T ss_pred CCCcccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHHCC------------CCCcCCCCCCc-------hhcCcc
Confidence 44578999999999999 99999999999999999954322 14999999875 567889
Q ss_pred hHHHHHHHHHHhccc
Q 024340 119 NYYLLWMVESMNGDR 133 (269)
Q Consensus 119 N~~l~~lve~~~~~~ 133 (269)
|..+.++++.+..++
T Consensus 261 n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 261 NLAMKEVIDAFISEN 275 (281)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHC
Confidence 999999999988654
No 28
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3e-12 Score=90.96 Aligned_cols=55 Identities=25% Similarity=0.633 Sum_probs=43.8
Q ss_pred ccCCCCcccccccccccccc---CCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 37 NNSREEGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
....++...|+||++.+.+. .+.+++++|||.||..|+.+|+.... .||.||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~ 66 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKI 66 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-------------SCTTTCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-------------CCCCCCCcc
Confidence 45567889999999999982 22238889999999999999865422 699999875
No 29
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=4e-12 Score=100.59 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=57.4
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 116 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 116 (269)
...+++.++|+||++.+.+ |++++|||+||..|+.+|+..... .||.||..+. ...+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~------------~CP~Cr~~~~-------~~~~ 68 (118)
T 3hct_A 12 DPPLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGH------------KCPVDNEILL-------ENQL 68 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCS------------BCTTTCCBCC-------GGGC
T ss_pred ccCCCCCCCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCC------------CCCCCCCCcC-------HHhc
Confidence 4567889999999999999 999999999999999998654331 6999999865 3455
Q ss_pred cchHHHHHHHHHHhc
Q 024340 117 QKNYYLLWMVESMNG 131 (269)
Q Consensus 117 ~~N~~l~~lve~~~~ 131 (269)
..+..+.+.++.++.
T Consensus 69 ~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 69 FPDNFAKREILSLMV 83 (118)
T ss_dssp EECHHHHHHHHTSEE
T ss_pred ccCHHHHHHHcccee
Confidence 567777777765543
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.2e-12 Score=93.04 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=42.2
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 39 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
...+.++|+||++.+.+ |+.++|||.||..|+.+|++.. ..||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~-------------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLG-------------KRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTCS-------------SBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHCC-------------CcCcCcCchhC
Confidence 44578899999999999 9999999999999999975432 26999998753
No 31
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=1.4e-12 Score=101.47 Aligned_cols=54 Identities=35% Similarity=0.631 Sum_probs=44.1
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 38 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
..+++.+.|+||++.+.+ |++++|||+||..|+.+|..... +...||.||..+.
T Consensus 16 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~----------~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 16 NAMQKILECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKK----------GPSQCPLCKNDIT 69 (112)
T ss_dssp HHHHHHTSCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSS----------SSCCCTTTSCCCC
T ss_pred HhccCCCCCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCC----------CCCCCcCCCCcCC
Confidence 345678899999999999 99999999999999999854322 1237999999865
No 32
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.23 E-value=8.7e-12 Score=106.23 Aligned_cols=74 Identities=12% Similarity=0.003 Sum_probs=62.7
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 116 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 116 (269)
.....+.+.||||+++|.+ |++++|||+||+.||..|+.... . .||.|+.... ..++
T Consensus 100 ~~~ip~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~-----------~-tcP~t~~~l~-------~~~L 156 (179)
T 2f42_A 100 KREIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVG-----------H-FDPVTRSPLT-------QDQL 156 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTC-----------S-BCTTTCCBCC-------GGGC
T ss_pred ccCCcHhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCC-----------C-CCCCCcCCCC-------hhhC
Confidence 4566789999999999999 99999999999999999954322 1 5999999865 5688
Q ss_pred cchHHHHHHHHHHhccc
Q 024340 117 QKNYYLLWMVESMNGDR 133 (269)
Q Consensus 117 ~~N~~l~~lve~~~~~~ 133 (269)
..|..+.++++.+...+
T Consensus 157 ~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 157 IPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp EECHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHC
Confidence 99999999999887654
No 33
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.17 E-value=1.3e-11 Score=90.16 Aligned_cols=54 Identities=28% Similarity=0.586 Sum_probs=42.1
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 38 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
+..++..+|+||++.|.+.+ ..+.++|||.||..|+.+|+.... .||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 63 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHD-------------SCPVCRKSLT 63 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHTTTC-------------SCTTTCCCCC
T ss_pred ccCCCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHHcCC-------------cCcCcCCccC
Confidence 44567889999999998732 236679999999999999854321 6999998864
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=85.15 Aligned_cols=38 Identities=26% Similarity=0.711 Sum_probs=34.4
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHH
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQ 78 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~ 78 (269)
.+.+++.++|+||++.+.+ |++++|||+||..|+.+|+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKE----PVIIECGHNFCKACITRWW 46 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHT
T ss_pred hhccccCCCCccCCcccCc----cEeCCCCCccCHHHHHHHH
Confidence 4566788999999999999 9999999999999999983
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.8e-11 Score=86.55 Aligned_cols=52 Identities=31% Similarity=0.493 Sum_probs=40.1
Q ss_pred Cccccccccc-cccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 42 EGLECPICWE-SFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 42 e~l~CpICl~-~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
++++|+||++ .+.+....+++++|||+||..|+.+|+... ...||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG------------AGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT------------SSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC------------CCcCCCCCCccc
Confidence 5688999999 999932222678999999999999984321 126999999864
No 36
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=86.41 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=40.8
Q ss_pred Ccccccccccccccc---CCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 42 EGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 42 e~l~CpICl~~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
+.++|+||++.+.+. .+.++.++|||.||..|+.+|+.... .||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-------------BCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-------------CCCCCCccCC
Confidence 567899999999981 22238889999999999999865422 6999998764
No 37
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.7e-11 Score=107.63 Aligned_cols=78 Identities=15% Similarity=0.274 Sum_probs=62.8
Q ss_pred chhccccCCCCccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCcccccc--CCccccccc
Q 024340 32 DDASLNNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPW--CNMVSLRLI 108 (269)
Q Consensus 32 ~~~s~~~~lee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~--CR~~~~~~~ 108 (269)
+++-........++||||++.|.+ |++. .|||+||+.||..| |... +...||. |++.+.
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~-~~~~----------~~~~CPvtGCr~~l~--- 231 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEA----PLISRKCNHVFDRDGIQNY-LQGY----------TTRDCPQAACSQVVS--- 231 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHH-STTC----------SCEECSGGGCSCEEC---
T ss_pred CccceecCCceeeECcCccCcccC----CeeeCCCCCcccHHHHHHH-HHhC----------CCCCCCcccccCcCc---
Confidence 333445667899999999999999 9986 99999999999998 4322 1347999 999875
Q ss_pred ccCCCCCCcchHHHHHHHHHHhc
Q 024340 109 CKGNLKFPQKNYYLLWMVESMNG 131 (269)
Q Consensus 109 ~~~~~~~~~~N~~l~~lve~~~~ 131 (269)
..++..|..+..+++..+.
T Consensus 232 ----~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 232 ----MRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp ----GGGEEECHHHHHHHHHHHH
T ss_pred ----hhhCCcCHHHHHHHHHHHH
Confidence 6788999999999887654
No 38
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.14 E-value=3e-11 Score=82.27 Aligned_cols=50 Identities=32% Similarity=0.662 Sum_probs=42.6
Q ss_pred CccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 42 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
+..+|+||++.+.+.++.++.++|||.||..|+.+|+.... .||.||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-------------RCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-------------CCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-------------cCCCCCCcC
Confidence 56789999999987777788899999999999999866532 699999864
No 39
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=9.1e-12 Score=86.11 Aligned_cols=46 Identities=30% Similarity=0.579 Sum_probs=39.5
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 40 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.++.++|+||++.|.+ |++++|||+||..|+..+ ...||.||+.+.
T Consensus 3 e~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~----------------~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEAS----------------GMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSS----------------SSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCC----eEEcCCCCcccHHHHccC----------------CCCCCcCCcEee
Confidence 3578899999999999 999999999999999762 126999999864
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=6.1e-11 Score=84.59 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=42.6
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 38 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
...++...|+||++.|...+ .++.++|||.||..|+.+|+.... .||.||..+.
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 62 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLITNK-------------KCPICRVDIE 62 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHHHCS-------------BCTTTCSBSC
T ss_pred CcCCCCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHHcCC-------------CCcCcCcccc
Confidence 34457788999999986522 277889999999999999865432 6999998864
No 41
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=2.8e-11 Score=99.15 Aligned_cols=52 Identities=21% Similarity=0.515 Sum_probs=44.0
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
.+.+++.++|+||++.+.+ |++++|||+||..||.+|.... ...||.||..+
T Consensus 25 ~~~l~~~~~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~------------~~~CP~Cr~~~ 76 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRR----PFQAQCGHRYCSFCLASILSSG------------PQNCAACVHEG 76 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHGGGS------------CEECHHHHHTT
T ss_pred hccCCcCcCCCCCChhhcC----cEECCCCCccCHHHHHHHHhcC------------CCCCCCCCCcc
Confidence 3577899999999999999 9999999999999999984321 12699999864
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.10 E-value=2.3e-11 Score=95.68 Aligned_cols=70 Identities=20% Similarity=0.371 Sum_probs=51.5
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCC-c
Q 024340 39 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP-Q 117 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~-~ 117 (269)
.+++.+.|+||++.+.+ |++++|||+||..|+.+|+.... ..||.||..+. ..++ .
T Consensus 19 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~------------~~CP~Cr~~~~-------~~~~~~ 75 (116)
T 1rmd_A 19 HFVKSISCQICEHILAD----PVETSCKHLFCRICILRCLKVMG------------SYCPSCRYPCF-------PTDLES 75 (116)
T ss_dssp HHHHHTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTC------------SBCTTTCCBCC-------GGGCBC
T ss_pred hccCCCCCCCCCcHhcC----cEEcCCCCcccHHHHHHHHhHCc------------CcCCCCCCCCC-------Hhhccc
Confidence 44578999999999999 99999999999999999865422 16999999864 2222 2
Q ss_pred chHHHHHHHHHHhc
Q 024340 118 KNYYLLWMVESMNG 131 (269)
Q Consensus 118 ~N~~l~~lve~~~~ 131 (269)
.+..+.++++.++.
T Consensus 76 ~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 76 PVKSFLNILNSLMV 89 (116)
T ss_dssp CCHHHHHHHHHCEE
T ss_pred cHHHHHHHHHHhcC
Confidence 34555556555443
No 43
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.10 E-value=5.1e-11 Score=99.73 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=56.9
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 116 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 116 (269)
...+++.+.|+||++.+.+ |++++|||+||..|+.+|+..... .||.||..+. ...+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~------------~CP~Cr~~~~-------~~~~ 68 (170)
T 3hcs_A 12 DPPLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGH------------KCPVDNEILL-------ENQL 68 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCS------------BCTTTCCBCC-------GGGC
T ss_pred ccCCCCCCCCCCCChhhcC----cEECCCCCHHHHHHHHHHHHhCCC------------CCCCCccCcc-------hhhh
Confidence 4567899999999999999 999999999999999998654321 6999998864 3445
Q ss_pred cchHHHHHHHHHHhc
Q 024340 117 QKNYYLLWMVESMNG 131 (269)
Q Consensus 117 ~~N~~l~~lve~~~~ 131 (269)
..+..+.+.+++++.
T Consensus 69 ~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 69 FPDNFAKREILSLMV 83 (170)
T ss_dssp EECHHHHHHHHTSEE
T ss_pred hhhHHHHHHHhhccc
Confidence 566777777765543
No 44
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=84.94 Aligned_cols=52 Identities=33% Similarity=0.557 Sum_probs=41.3
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 39 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
..++...|+||++.|.+.+ ..+.++|||.||..|+.+|+.... .||.||+.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~-------------~CP~Cr~~~ 70 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKANR-------------TCPICRADS 70 (75)
T ss_dssp CSSSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHHCS-------------SCTTTCCCC
T ss_pred ccCCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHcCC-------------cCcCcCCcC
Confidence 3457789999999998822 127789999999999999965432 699999875
No 45
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=6.7e-11 Score=85.53 Aligned_cols=55 Identities=24% Similarity=0.515 Sum_probs=42.6
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
....++...|+||++.|.+.+. ..+++|||.||..|+.+|+.... .||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~~~~~~~-------------~CP~Cr~~~~ 63 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDE-LGICPCKHAFHRKCLIKWLEVRK-------------VCPLCNMPVL 63 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSC-EEEETTTEEEEHHHHHHHHHHCS-------------BCTTTCCBCS
T ss_pred cccCCCCCCCcCCCcccCCCCc-EEEcCCCCEecHHHHHHHHHcCC-------------cCCCcCcccc
Confidence 3455678899999999987332 34559999999999999865432 6999998764
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.03 E-value=1.1e-10 Score=83.01 Aligned_cols=48 Identities=31% Similarity=0.600 Sum_probs=39.9
Q ss_pred CCccccccccccccccCCCc-EEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 41 EEGLECPICWESFNVVENLP-YVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P-~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
++...|+||++.+.+ | +.++|||.||..|+.+|+.... .||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSN----YSMALPCLHAFCYVCITRWIRQNP-------------TCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHHHSC-------------STTTTCCCCC
T ss_pred CCCCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHhCcC-------------cCcCCChhhH
Confidence 456789999999988 7 6679999999999999865432 6999998764
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=7.8e-11 Score=80.25 Aligned_cols=51 Identities=29% Similarity=0.657 Sum_probs=40.4
Q ss_pred CCCccccccccccccccCCCcEEec-CCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 40 REEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
+++..+|+||++.+.+.+. +..++ |||.||..|+.+|+.... .||.||..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~-~~~~~~C~H~f~~~Ci~~w~~~~~-------------~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEE-ARFLPRCGHGFHAECVDMWLGSHS-------------TCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSC-CEECSSSCCEECTTHHHHTTTTCC-------------SCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCc-eEECCCCCCcccHHHHHHHHHcCC-------------cCcCCCCEe
Confidence 4677899999999987543 66776 999999999999853311 699999864
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=9.7e-11 Score=86.68 Aligned_cols=55 Identities=25% Similarity=0.614 Sum_probs=40.6
Q ss_pred ccCCCCccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
...++++++||||++.+...+ +..+ +|||+||..|+.++ |... ...||.||+.+.
T Consensus 5 ~~~~~~~~~CpICle~~~~~d--~~~~p~~CGH~fC~~Cl~~~-~~~~-----------~~~CP~CR~~~~ 61 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDD--INFFPCTCGYQICRFCWHRI-RTDE-----------NGLCPACRKPYP 61 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTT--TTCCSSTTSCCCCHHHHHHH-TTSS-----------CSBCTTTCCBCS
T ss_pred ccccccCCcCCccCccCcccc--ccccccCCCCCcCHHHHHHH-HhcC-----------CCCCCCCCCccC
Confidence 345678999999999885422 3444 49999999999987 4321 227999999764
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=86.48 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=41.6
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 39 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
..++...|+||++.|.+.+ .++.++|||.||..|+..|+.... .||.||..+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~~~-------------~CP~Cr~~~ 87 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQKSG-------------TCPVCRCMF 87 (91)
T ss_dssp SSSSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHTTTC-------------BCTTTCCBS
T ss_pred ccCCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHHcCC-------------cCcCcCccC
Confidence 3457889999999987643 367789999999999999864322 699999875
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.5e-10 Score=91.77 Aligned_cols=52 Identities=27% Similarity=0.673 Sum_probs=41.3
Q ss_pred CCcccccccccccccc---CCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 41 EEGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 41 ee~l~CpICl~~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.+.++|+||++.|.+. ++.++.++|||+||..|+.+|+.... .||.||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-------------BCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-------------CCCCCCCcCc
Confidence 4678999999999991 11229999999999999999854322 6999998764
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.97 E-value=5.1e-11 Score=86.91 Aligned_cols=50 Identities=28% Similarity=0.538 Sum_probs=42.7
Q ss_pred ccccCCCCccccccccccccccCCCcEEecCCCc-chHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 35 SLNNSREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 35 s~~~~lee~l~CpICl~~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
+..+.+++.+.|+||++.+.+ |+.++|||. ||..|+..| . .||.||..+.
T Consensus 16 ~~~~~~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~-------------~CP~Cr~~i~ 66 (74)
T 4ic3_A 16 EQLRRLQEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----D-------------KCPMCYTVIT 66 (74)
T ss_dssp HHHHHHHHHTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC----S-------------BCTTTCCBCS
T ss_pred HHHhcCccCCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC----c-------------cCCCcCcCcc
Confidence 334566788999999999999 999999999 999999875 1 6999998764
No 52
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=9.5e-11 Score=83.82 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=40.8
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.+..++..+|+||++.+.+ +.++|||.||..|+.+|+.. ...||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~-------------~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDR-------------HRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCC-------------CSSCHHHHHCTT
T ss_pred hhcCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHC-------------cCcCCCcCCccc
Confidence 3456678999999999875 77899999999999997431 126999998754
No 53
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.6e-10 Score=84.31 Aligned_cols=51 Identities=27% Similarity=0.528 Sum_probs=42.1
Q ss_pred hccccCCCCccccccccccccccCCCcEEecCCCc-chHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 34 ASLNNSREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 34 ~s~~~~lee~l~CpICl~~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
....+.+++..+|+||++.+.+ |+.++|||. ||..|+.+. . .||.||..+.
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~----~-------------~CP~Cr~~i~ 67 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----D-------------KCPMCYTVIT 67 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC----S-------------BCTTTCCBCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC----C-------------CCccCCceec
Confidence 3444566788999999999999 999999999 999999642 1 6999998764
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.90 E-value=6.1e-10 Score=86.97 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=39.6
Q ss_pred CccccccccccccccC--------------CCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 42 EGLECPICWESFNVVE--------------NLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 42 e~l~CpICl~~f~~~~--------------~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
++..|+||++.|.+.. .+...++|||.||..||..|+....+. ....||.||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~--------~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD--------GSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS--------SCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC--------CCCcCCCCCCccC
Confidence 4468999999997621 122367999999999999997443210 1237999998753
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.7e-09 Score=78.96 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=36.9
Q ss_pred Cccccccccccccc----------cCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 42 EGLECPICWESFNV----------VENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 42 e~l~CpICl~~f~~----------~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
++.+|+||++.|.+ .+..++++ +|||.||..||.+|+.... .||+||+.+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-------------~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-------------RCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-------------BCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-------------CCCCcCCCc
Confidence 45568888887765 23445566 5999999999999854322 699999875
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=1.7e-09 Score=85.70 Aligned_cols=56 Identities=25% Similarity=0.584 Sum_probs=44.2
Q ss_pred ccCCCCcccccccccccccc---CCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 37 NNSREEGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
....++...|+||++.|.+. .+.++.++|||.||..|+.+|+.... .||.||..+.
T Consensus 66 l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 124 (133)
T 4ap4_A 66 IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKIN 124 (133)
T ss_dssp CBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-------------BCTTTCCBCC
T ss_pred cccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-------------CCCCCCCcCC
Confidence 44457789999999999981 22238889999999999999965433 6999998764
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.70 E-value=6.6e-09 Score=97.98 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=41.2
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 40 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.++..+|+||++.+.+ |+.++|||.||..|+..|..... ..||.||..+.
T Consensus 329 ~~~~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~------------~~CP~CR~~i~ 378 (389)
T 2y1n_A 329 GSTFQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEG------------QGCPFCRCEIK 378 (389)
T ss_dssp TTSSSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTC------------SBCTTTCCBCC
T ss_pred cCCCCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCC------------CCCCCCCCccC
Confidence 3445799999999999 99999999999999999865211 16999999764
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.69 E-value=6.3e-09 Score=73.74 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=39.6
Q ss_pred CCccccccccccccccCCCcEEe--cCCCc-chHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 41 EEGLECPICWESFNVVENLPYVL--WCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L--~CGHt-FC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
+++.+|+||++...+ ++.+ +|||. +|..|+.++..... .||.||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~-------------~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHGKTGHLMACFTCAKKLKKRNK-------------PCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEETTEEEEEECHHHHHHHHHTTC-------------CCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC----EEEECCCCCChhhHHHHHHHHHHcCC-------------cCCCcCcchh
Confidence 356789999999999 9887 99999 89999999843221 6999999864
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.7e-08 Score=72.43 Aligned_cols=46 Identities=33% Similarity=0.651 Sum_probs=38.9
Q ss_pred CCCCccccccccccccccCCCcEEecCCCc-chHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 39 SREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
..++...|.||++...+ ++.+||||. ||..|+... . .||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~----~-------------~CP~CR~~i~ 57 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKYF----Q-------------QCPMCRQFVQ 57 (68)
T ss_dssp SCCCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHHC----S-------------SCTTTCCCCC
T ss_pred cCCCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhcC----C-------------CCCCCCcchh
Confidence 34467889999999999 999999999 999999842 1 6999999864
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.63 E-value=1.1e-08 Score=72.18 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=39.3
Q ss_pred CCccccccccccccccCCCcEEe--cCCCc-chHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 41 EEGLECPICWESFNVVENLPYVL--WCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L--~CGHt-FC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
+....|+||++...+ ++++ ||||. ||..|+.++..... .||.||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~-------------~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD----GNIIHGRTGHLVTCFHCARRLKKAGA-------------SCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC----EEEEETTEEEEEECHHHHHHHHHTTC-------------BCTTTCCBCC
T ss_pred CcCCCCcccCCcCCC----eEEEecCCCCHhHHHHHHHHHHHhCC-------------cCCCcCchhh
Confidence 346689999999988 8888 99998 99999999843321 6999999864
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=6e-09 Score=78.95 Aligned_cols=53 Identities=21% Similarity=0.476 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCcEEe---cCCCcchHhhHHHHHHhhccCCCCCCCCCCcccccc--CCcc
Q 024340 42 EGLECPICWESFNVVENLPYVL---WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPW--CNMV 103 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L---~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~--CR~~ 103 (269)
+.++|+||++.+.. |.++ +|||.||..|+.++.......+. ...+.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~----~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-----~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPV----EQMTTIAQCQCIFCTLCLKQYVELLIKEGL-----ETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBG----GGEEEETTTTEEEEHHHHHHHHHHHHHHCS-----CCCEECSCTTCSSC
T ss_pred CCcCCcccCccccc----ccceEcCCCCCcccHHHHHHHHHHHhhcCC-----cccccCccccCCCC
Confidence 57889999999988 7554 69999999999998544321111 12468999 9987
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=2.5e-09 Score=79.09 Aligned_cols=48 Identities=29% Similarity=0.600 Sum_probs=40.9
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCc-chHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.+.+++...|+||++.+.+ |+.+||||. ||..|+..+ + .||.||..+.
T Consensus 12 ~~~l~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~-~----------------~CP~Cr~~i~ 60 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL-Q----------------SCPVCRSRVE 60 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC-S----------------BCTTTCCBCC
T ss_pred HHcCCCCCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc-C----------------cCCCCCchhh
Confidence 3455678899999999999 999999999 999999864 1 5999999875
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.60 E-value=2.1e-08 Score=78.23 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=38.2
Q ss_pred Ccccccccccccccc-------------CCC-cEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 42 EGLECPICWESFNVV-------------ENL-PYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 42 e~l~CpICl~~f~~~-------------~~~-P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
+...|+||++.|.+. +.. .+.++|||.||..||.+|+.... .||+||...
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-------------~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-------------VCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-------------BCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-------------cCcCCCCcc
Confidence 567899999999862 111 24469999999999999865422 699999874
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.53 E-value=1.3e-08 Score=94.75 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=42.4
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCc-chHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 36 LNNSREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
....+++...|+||++.+.+ |+.++|||. ||..|+..+ . .||.||..+.
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~----~-------------~CP~CR~~i~ 337 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSL----R-------------KCPICRGIIK 337 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCC----EEEETTCCEEECTTTGGGC----S-------------BCTTTCCBCC
T ss_pred HHHhCcCCCCCCccCCcCCc----eEEcCCCChhHhHHHHhcC----C-------------cCCCCCCCcc
Confidence 34566788999999999999 999999999 999999875 1 6999999864
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.46 E-value=7.3e-08 Score=67.79 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=40.3
Q ss_pred ccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 43 GLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.+.||||++.+.+ |+++ +|||+|++.||.+|+.... .||.+++...
T Consensus 3 ~~~CpIs~~~m~d----PV~~~~sG~~yer~~I~~~l~~~~-------------~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRR----PVLSPKSRTIFEKSLLEQYVKDTG-------------NDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSS----EEEETTTTEEEEHHHHHHHHHHHS-------------BCTTTCCBCC
T ss_pred eEEecCCCCCCCC----CEEeCCCCcEEcHHHHHHHHHhCC-------------CCcCCcCCCC
Confidence 4789999999999 9999 9999999999999987643 5999998764
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.7e-07 Score=69.45 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=41.1
Q ss_pred CCccccccccccccccCCCcEEecCC-----CcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCG-----HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CG-----HtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.++..|.||++.+.+.+ +.++||+ |.|+..||.+|+.... ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-----------~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSD-----------TRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHHHHHHHHC-----------CSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHHHHHhhCC-----------CCCCCCCCCeee
Confidence 35678999999987544 7788996 9999999999976643 126999998753
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.39 E-value=2.8e-08 Score=78.96 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=1.0
Q ss_pred Cccccccccccccc-------------cCCCcEE-ecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 42 EGLECPICWESFNV-------------VENLPYV-LWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 42 e~l~CpICl~~f~~-------------~~~~P~~-L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
+...|+||++.|.+ .+..+++ ++|+|.||..||.+|+.... .||.||...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-------------~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-------------VCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-------------cCCCCCCee
Confidence 45689999999976 2222333 48999999999999965532 699999874
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=4.4e-06 Score=60.99 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=38.4
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
+...+|+||++.+....+.+ .|+|.|...|+.+|++... .-.||.||....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~-----------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNA-----------EPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCS-----------SCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcC-----------CCCCCCCcCcCC
Confidence 45678999999998743333 8999999999999854321 126999998753
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.64 E-value=2.8e-05 Score=72.14 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=44.8
Q ss_pred CCCccccccccccccccCCCcEE----ecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 40 REEGLECPICWESFNVVENLPYV----LWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~----L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.++..+|+||++.+.+...+|.. ..|||.|+..|+.+|+.....+.+ ..+ ...-.||.||.++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRq-SFn-vi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKT-FLE-VSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSC-TTT-CCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccc-ccc-ccCCCCCCCCCcCC
Confidence 35678899999999875556643 479999999999999876432110 000 11237999999764
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.60 E-value=3.6e-05 Score=59.05 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=36.8
Q ss_pred ccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccc
Q 024340 45 ECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRL 107 (269)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~ 107 (269)
.|++|.-.+.. ..+++||+|.||.+|...+.++..+ .||.|+..+.++
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k------------~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDK------------MCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCC------------BCTTTCCBCSEE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCC------------CCcCcCCeeeee
Confidence 48888887776 3567799999999999987433322 699999987644
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.40 E-value=0.00011 Score=51.16 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=37.1
Q ss_pred CCccccccccccccccCCCcEEecCC--C---cchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCG--H---TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CG--H---tFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
++...|.||++...+ +.++||. | .|...|+.+|+.... ...||+|+...
T Consensus 4 ~~~~~CrIC~~~~~~----~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-----------~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGN----ERFRACGCTGELENVHRSCLSTWLTISR-----------NTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSC----CCCCSCCCSSGGGSCCHHHHHHHHHHHT-----------CSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCC----ceecCcCCCCchhhhHHHHHHHHHHhCC-----------CCccCCCCCee
Confidence 466789999997655 6677865 4 899999999976533 12799999864
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.18 E-value=0.0016 Score=49.17 Aligned_cols=32 Identities=19% Similarity=0.492 Sum_probs=27.2
Q ss_pred Ccccccccccc-ccccCCCcEE--ecCCCcchHhhHHHH
Q 024340 42 EGLECPICWES-FNVVENLPYV--LWCGHTLCKNCVLGL 77 (269)
Q Consensus 42 e~l~CpICl~~-f~~~~~~P~~--L~CGHtFC~~CL~~~ 77 (269)
|++.|++|.+. +.+ |+. +.|+|+||..|+...
T Consensus 2 ee~~C~~C~~~~~~~----av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD----AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCB----CCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCC----ceEECCcCChHHhHHHCHHH
Confidence 56889999975 667 887 799999999999973
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.74 E-value=0.007 Score=45.76 Aligned_cols=48 Identities=29% Similarity=0.591 Sum_probs=37.3
Q ss_pred cCCCCccccccccccccccCCCcEEecC-CCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 38 NSREEGLECPICWESFNVVENLPYVLWC-GHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~C-GHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
...---+.|..||...+. ...| .|.+|.+|+..++..+. .||+|..+.
T Consensus 23 ~s~~G~~nCKsCWf~~k~------LV~C~dHYLCl~CLtlmL~~Sd-------------rCpIC~~pL 71 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKG------LVECNNHYLCLNCLTLLLSVSN-------------RCPICKMPL 71 (99)
T ss_dssp CCCSCCCCCCSSCSCCSS------EEECSSCEEEHHHHHHTCSSSS-------------EETTTTEEC
T ss_pred ccccCcccChhhccccCC------eeeecchhhHHHHHHHHHhhcc-------------CCcccCCcC
Confidence 344567789999998887 4566 59999999998865543 799998765
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.59 E-value=0.007 Score=62.71 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=62.8
Q ss_pred ccCCCCccccccccccccccCCCcEEecCC-CcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 024340 37 NNSREEGLECPICWESFNVVENLPYVLWCG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 115 (269)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CG-HtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~ 115 (269)
.....+++.|||-++++.+ |++++-| +|+=+.+|.+|+.... +||.=|++.. ...
T Consensus 885 ~~~iP~~F~cPIs~~lM~D----PVilpsG~~TydR~~I~~wl~~~~-------------tdP~Tr~~L~-------~~~ 940 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKD----PVILPASKMNIDRSTIKAHLLSDS-------------TDPFNRMPLK-------LED 940 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCC-------------BCTTTCCBCC-------GGG
T ss_pred ccCCcHHhCCcchhhHHhC----CeEcCCCCEEECHHHHHHHHhcCC-------------CCCCCCCCCC-------ccc
Confidence 4566789999999999999 9999998 6999999999875422 6999998765 567
Q ss_pred CcchHHHHHHHHHHhcccCC
Q 024340 116 PQKNYYLLWMVESMNGDRSK 135 (269)
Q Consensus 116 ~~~N~~l~~lve~~~~~~~~ 135 (269)
+.+|..++..++.+..++.+
T Consensus 941 liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 941 VTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CEECHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHh
Confidence 88999999999998766543
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.45 E-value=0.029 Score=49.27 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=37.4
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 42 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
....|.+|.++... -+.. .|+|.|+..|+..|. +... ...||.|+....
T Consensus 179 ~i~~C~iC~~iv~~----g~~C~~C~~~~H~~C~~~~~-~~~~----------~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQ----GQSCETCGIRMHLPCVAKYF-QSNA----------EPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSS----CEECSSSCCEECHHHHHHHT-TTCS----------SCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhC----CcccCccChHHHHHHHHHHH-HhCC----------CCCCCCCCCCCC
Confidence 36779999999997 4555 499999999999984 3221 226999998764
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.88 E-value=0.17 Score=47.13 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=49.8
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcchHh--hHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCC
Q 024340 38 NSREEGLECPICWESFNVVENLPYVL-WCGHTLCKN--CVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 114 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~--CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~ 114 (269)
....-.+.||+-...+.. |+.- .|.|.-|-+ =+...... . ....||.|.+.+. ..
T Consensus 244 ~s~~vSL~CPlS~~ri~~----PvRg~~C~HlQCFDl~sfL~~~~~-~----------~~W~CPIC~k~~~-------~~ 301 (371)
T 3i2d_A 244 TSTIMSLQCPISYTRMKY----PSKSINCKHLQCFDALWFLHSQLQ-I----------PTWQCPVCQIDIA-------LE 301 (371)
T ss_dssp CEEEEESBCTTTSSBCSS----EEEETTCCSSCCEEHHHHHHHHHH-S----------CCCBCTTTCCBCC-------GG
T ss_pred eeeEEeecCCCccccccc----cCcCCcCCCcceECHHHHHHHhhc-C----------CceeCCCCCcccC-------HH
Confidence 344567999999999999 9988 899984443 34443222 1 1458999998875 67
Q ss_pred CCcchHHHHHHHHHH
Q 024340 115 FPQKNYYLLWMVESM 129 (269)
Q Consensus 115 ~~~~N~~l~~lve~~ 129 (269)
++..+..+.++++..
T Consensus 302 dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 302 NLAISEFVDDILQNC 316 (371)
T ss_dssp GEEEBHHHHHHHTTS
T ss_pred HeeEcHHHHHHHHhc
Confidence 778888777777654
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.60 E-value=0.49 Score=34.71 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=30.8
Q ss_pred CCccccccccccccccCCCcEEecC----CCcchHhhHHHHHHhhcc
Q 024340 41 EEGLECPICWESFNVVENLPYVLWC----GHTLCKNCVLGLQRAVIR 83 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~C----GHtFC~~CL~~~~~~~~~ 83 (269)
...+.|.+|.+.+.+ --...| +|.||-.|-+...++..+
T Consensus 13 ~a~l~CtlC~erLEd----tHFVQCPsv~~HkFCFpCsr~sIk~q~~ 55 (93)
T 2cs3_A 13 SGPLCCTICHERLED----THFVQCPSVPSHKFCFPCSRESIKAQGA 55 (93)
T ss_dssp CCSCCCSSSCSCCSS----TTSEECSSCSSCEECHHHHHHHHHHHHS
T ss_pred CCeeEeecchhhhcc----CceeeCCCccCCeeeccccHHHHHhcCC
Confidence 467899999999998 434455 799999999988776553
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.15 E-value=0.88 Score=42.20 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=49.9
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcch--HhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCC
Q 024340 38 NSREEGLECPICWESFNVVENLPYVL-WCGHTLC--KNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 114 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L-~CGHtFC--~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~ 114 (269)
....-.+.||+-...+.. |..- .|.|.=| ..=...+... . ....||.|.+... ..
T Consensus 210 ~~~~vSL~CPlS~~ri~~----P~Rg~~C~HlqCFDl~sfL~~~~~-~----------~~W~CPiC~k~~~-------~~ 267 (360)
T 4fo9_A 210 TSLRVSLMCPLGKMRLTI----PCRAVTCTHLQCFDAALYLQMNEK-K----------PTWICPVCDKKAA-------YE 267 (360)
T ss_dssp CCEEEESBCTTTCSBCSS----EEEETTCCCCCCEEHHHHHHHHHH-S----------CCCBCTTTCSBCC-------GG
T ss_pred eeeEEeeeCCCccceecc----CCcCCCCCCCccCCHHHHHHHHhh-C----------CCeECCCCCcccC-------HH
Confidence 445568899999999999 9988 8999844 4434443222 1 1458999999875 67
Q ss_pred CCcchHHHHHHHHHH
Q 024340 115 FPQKNYYLLWMVESM 129 (269)
Q Consensus 115 ~~~~N~~l~~lve~~ 129 (269)
++..+..+.++++..
T Consensus 268 dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 268 SLILDGLFMEILNDC 282 (360)
T ss_dssp GEEEBHHHHHHHTTC
T ss_pred HeEEcHHHHHHHHhC
Confidence 778888777777644
No 79
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=54.98 E-value=6.2 Score=27.67 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=23.4
Q ss_pred cccccccccccccCCCcEEe-cCCCcchHhhHH
Q 024340 44 LECPICWESFNVVENLPYVL-WCGHTLCKNCVL 75 (269)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~ 75 (269)
-.|.+|...|.--. +...- .||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~-RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLN-RKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTB-CCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCcc-ccccCCCCCEEEcccccC
Confidence 47999999887522 23344 899999999975
No 80
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=52.50 E-value=8.2 Score=31.31 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=35.5
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcc
Q 024340 42 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 103 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~ 103 (269)
.+-.|.+|...|.--.+...+. .|.|.+|.+|-.. .+. .....|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~-----~~~-------~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA-----HPE-------EQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC-----CSS-------SSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc-----cCC-------CCcEeeHHHHHH
Confidence 5778999999876555556666 7999999999621 110 125689999764
No 81
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=52.13 E-value=3.6 Score=25.03 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=13.0
Q ss_pred CCccccccccccccc
Q 024340 41 EEGLECPICWESFNV 55 (269)
Q Consensus 41 ee~l~CpICl~~f~~ 55 (269)
.|.+.||+|...+..
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 468999999998887
No 82
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=51.17 E-value=6.1 Score=28.95 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=25.0
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 42 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
+...|.+|...|.--.+ ...- .||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~R-rhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKR-RHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSC-CEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhh-CccccCCCCEECCcccCC
Confidence 45579999998875322 3344 8999999999764
No 83
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=50.21 E-value=7.5 Score=28.01 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=25.4
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 42 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
+...|.+|...|.--.+ ...- .||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~R-rHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVR-RHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSC-CEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchh-cccccCCCcEEChHHhCC
Confidence 55679999999876322 3344 8999999999754
No 84
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=50.03 E-value=1.3 Score=33.46 Aligned_cols=40 Identities=28% Similarity=0.576 Sum_probs=26.9
Q ss_pred cccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 44 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
..||.|...+.. .=++.+|..|-... .. ...||.|.++..
T Consensus 33 ~~CP~Cq~eL~~--------~g~~~hC~~C~~~f-~~-------------~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ--------DNGHARCRSCGEFI-EM-------------KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE--------ETTEEEETTTCCEE-EE-------------EEECTTTCSBCE
T ss_pred ccCccCCCccee--------cCCEEECccccchh-hc-------------cccCcchhhHHH
Confidence 899999996654 22444588886543 11 226999998865
No 85
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.01 E-value=7.6 Score=27.85 Aligned_cols=34 Identities=26% Similarity=0.646 Sum_probs=25.0
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 42 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
+...|.+|...|.--. +...- .||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~-RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISR-RKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTB-CCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCcc-ccccCCCCCCEEChHHhCC
Confidence 4557999999987522 23344 8999999999754
No 86
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.76 E-value=28 Score=25.66 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCccccccccccccccCCCcEEe--c--CC-CcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcc
Q 024340 40 REEGLECPICWESFNVVENLPYVL--W--CG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 103 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L--~--CG-HtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~ 103 (269)
..+...| +|.+.... .++. . |. .-|+..|+.- .. . ..+...||.|+..
T Consensus 33 ~~e~~yC-iC~~~~~g----~MI~CD~~dC~~~WfH~~CVgl--~~-~--------p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYG----EMIGCDNPDCSIEWFHFACVGL--TT-K--------PRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCCS----CCCCCSCSSCSCCCCCSTTTTC--SS-C--------CCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCCC----CEeEecCCCCCCCCEecccCCc--Cc-C--------CCCCEECcCccCc
Confidence 3466778 99997654 3322 3 44 4688888862 11 0 1245689999864
No 87
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=48.52 E-value=7 Score=28.60 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=25.4
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 41 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
++...|.+|...|.--. +...- .||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~-RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFK-KEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSS-CEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCcc-ccccCCCCCCEEChhHcCC
Confidence 45668999999887632 12333 8999999999753
No 88
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=46.66 E-value=8.9 Score=30.37 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=33.9
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcc
Q 024340 41 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 103 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~ 103 (269)
...-.|.+|...|.--.+..... .|.|.+|.+|-... . . . .......|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~-~--~--~----~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET-S--N--N----RPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC-C--C--S----SSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc-C--C--C----CCccceechhhHHH
Confidence 35678999999884323335555 79999999995431 0 0 0 01124578888753
No 89
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.57 E-value=8.2 Score=30.07 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=24.9
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 42 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
+...|.+|...|.--. +.... .||+.||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~-RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTV-RRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSS-CCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCcccccc-ccccCCCCCeEEChHHhCC
Confidence 3457999999987522 23444 8999999999754
No 90
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.89 E-value=9.6 Score=27.38 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=24.6
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 42 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
+...|.+|...|.--. +..-- .||..||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~-RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLK-KRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSS-CCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccch-hhhhhcCCCcEEChhhcCC
Confidence 4557999999886532 23344 8999999999653
No 91
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=44.39 E-value=11 Score=27.13 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=22.9
Q ss_pred ccccccccccc-cCCCcEEec-CCCcchHhhHHHH
Q 024340 45 ECPICWESFNV-VENLPYVLW-CGHTLCKNCVLGL 77 (269)
Q Consensus 45 ~CpICl~~f~~-~~~~P~~L~-CGHtFC~~CL~~~ 77 (269)
-||-|...+.. ....++.-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 48888876544 333455665 9999999997664
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.78 E-value=23 Score=26.26 Aligned_cols=51 Identities=25% Similarity=0.548 Sum_probs=33.3
Q ss_pred CccccccccccccccCCC-cEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 42 EGLECPICWESFNVVENL-PYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~-P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
..-.|.||.+-.--.++- +.+. .|+-..|+.|..--.+..+ ..||.|+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~------------q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT------------QNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC------------SSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccC------------ccccccCCcc
Confidence 345799999964432111 4444 6898999999975422222 2799998764
No 93
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=42.61 E-value=22 Score=24.59 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 40 REEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
.++...|++|....+. + ..+. .|...|...|+.-.. .. ...+...||.|+...
T Consensus 15 ~~~~~~C~~C~~~~~~-~--~mi~CD~C~~wfH~~Cv~~~~------~~---~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDG-S--PMIGCDDCDDWYHWPCVGIMA------AP---PEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSS-C--CEEECSSSSSEEEHHHHTCSS------CC---CSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCC-C--CEEEcCCCCcccccccCCCCc------cC---CCCCCEEChhccCch
Confidence 3466779999987643 1 2333 677888899985320 00 012356899997653
No 94
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.50 E-value=12 Score=31.93 Aligned_cols=35 Identities=26% Similarity=0.550 Sum_probs=25.9
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 41 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
.+...|.+|...|.--. +.... .||+.||..|...
T Consensus 162 ~~~~~C~~C~~~F~~~~-RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMT-RKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTB-CCEECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccc-cccccCCCcCEeChhhcCC
Confidence 34568999999887532 23444 8999999999754
No 95
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=39.41 E-value=12 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=29.9
Q ss_pred CccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcc
Q 024340 42 EGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 103 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~ 103 (269)
....|.||.+. . -.++ .|...|+..|+...+.. . ..+...||.|+..
T Consensus 11 ~~~~C~vC~~~--~----~ll~Cd~C~~~~H~~Cl~P~l~~-~--------P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG--T----DVLRCTHCAAAFHWRCHFPAGTS-R--------PGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC--T----TCEECSSSCCEECHHHHCTTTCC-C--------CSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC--C----eEEECCCCCCceecccCCCccCc-C--------CCCCEECccccCC
Confidence 44569999863 1 2333 68899999998643211 1 1235689999754
No 96
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.30 E-value=11 Score=28.45 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=12.2
Q ss_pred cchHhhHHHHHHhhc
Q 024340 68 TLCKNCVLGLQRAVI 82 (269)
Q Consensus 68 tFC~~CL~~~~~~~~ 82 (269)
-||++||.+|.....
T Consensus 42 GFCRNCLskWy~~aA 56 (105)
T 2o35_A 42 GFCRNCLSNWYREAA 56 (105)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 399999999977644
No 97
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=39.05 E-value=9.4 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=23.9
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 42 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
+...|..|...|.-..+ -... .||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~R-kHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 18 LEPSCKSCGAHFANTAR-KQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp --CCCTTTCCCCSSGGG-CEECTTTCCEECGGGEEC
T ss_pred ccCcccCcCCccccccc-cccCCCCCCeeCHHHhCC
Confidence 34579999998876322 2333 8999999999754
No 98
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=38.55 E-value=12 Score=28.30 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=11.7
Q ss_pred cchHhhHHHHHHhh
Q 024340 68 TLCKNCVLGLQRAV 81 (269)
Q Consensus 68 tFC~~CL~~~~~~~ 81 (269)
-||++||.+|....
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999997654
No 99
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.83 E-value=13 Score=31.42 Aligned_cols=35 Identities=26% Similarity=0.594 Sum_probs=26.0
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 41 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
.+...|.+|...|.-- ++.... .||+.||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCc-ccccccCCcCCEEChHHhCC
Confidence 4557999999988752 224444 8999999999754
No 100
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=37.23 E-value=3.9 Score=29.35 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=23.5
Q ss_pred cccccc--ccccccc-cCCCcEEe------cCCCcchHhhHHHH
Q 024340 43 GLECPI--CWESFNV-VENLPYVL------WCGHTLCKNCVLGL 77 (269)
Q Consensus 43 ~l~CpI--Cl~~f~~-~~~~P~~L------~CGHtFC~~CL~~~ 77 (269)
..-||- |...+.. .+...+.- .||+.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 556877 7775543 22334455 49999999998875
No 101
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=35.42 E-value=56 Score=28.53 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=12.2
Q ss_pred HhhhhhhhhhhhccchHH
Q 024340 245 FAIPSCLVLYFALPILDW 262 (269)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~ 262 (269)
-.+|.++++.+|+||+.=
T Consensus 80 TiiP~iILi~la~pS~~~ 97 (262)
T 2gsm_B 80 TIVPIVILVAIGAFSLPV 97 (262)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356777777777777643
No 102
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.06 E-value=42 Score=23.89 Aligned_cols=31 Identities=16% Similarity=0.511 Sum_probs=22.0
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHh
Q 024340 39 SREEGLECPICWESFNVVENLPYVLWCGHTLCKN 72 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~ 72 (269)
.......|..|.....- ++..-.||.+||..
T Consensus 21 ~k~~~nRC~~CrKkvgL---~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 21 PKPKKNRCFMCRKKVGL---TGFDCRCGNLFCGL 51 (74)
T ss_dssp CCSCTTBCSSSCCBCGG---GCEECTTSCEECSS
T ss_pred CCCcCCcChhhCCcccc---cCeecCCCCEechh
Confidence 33456689999885332 26777899999985
No 103
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=33.78 E-value=31 Score=21.91 Aligned_cols=47 Identities=19% Similarity=0.426 Sum_probs=26.7
Q ss_pred ccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcc
Q 024340 45 ECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 103 (269)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~ 103 (269)
.|.+|.+.-+. + ..++ .|...|...|+..-+. ..| .+...||.|+..
T Consensus 2 ~C~vC~~~~~~-~--~ll~Cd~C~~~~H~~Cl~p~l~------~~P---~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGED-D--KLILCDECNKAFHLFCLRPALY------EVP---DGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCC-S--CCEECTTTCCEECHHHHCTTCC------SCC---SSCCSCTTTSCC
T ss_pred CCCCCCCCCCC-C--CEEECCCCChhhCcccCCCCcC------CCC---CCcEECcCcccc
Confidence 47777764322 0 2233 6778888999863211 111 235689999753
No 104
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.03 E-value=33 Score=25.26 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=29.7
Q ss_pred CCccccccccccccccCCCcEEe---cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCc
Q 024340 41 EEGLECPICWESFNVVENLPYVL---WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 102 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L---~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~ 102 (269)
++...| ||...... -.++ .|...|...|+..-. ...+....||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~----~~mi~Cd~C~~w~H~~C~~~~~----------~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDD----GYMICCDKCSVWQHIDCMGIDR----------QHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCS----SCEEEBTTTCBEEETTTTTCCT----------TSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCC----CcEEEcCCCCCcCcCcCCCCCc----------cCCCCCEECCCCcC
Confidence 455678 89887655 3344 577788888874310 11234678999974
No 105
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=32.98 E-value=31 Score=22.97 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=10.6
Q ss_pred ccccccccccccc
Q 024340 43 GLECPICWESFNV 55 (269)
Q Consensus 43 ~l~CpICl~~f~~ 55 (269)
...|.+|.-+|+.
T Consensus 3 ~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 3 KYTCTVCGYIYDP 15 (54)
T ss_dssp CEEETTTCCEECT
T ss_pred ceECCCCCeEECC
Confidence 4679999988886
No 106
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=32.73 E-value=49 Score=22.05 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=30.1
Q ss_pred CCccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCc
Q 024340 41 EEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 102 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~ 102 (269)
.+...|.+|.+. . -+++ .|...|+..|+...+.. . ..+...||.|+.
T Consensus 9 ~~~~~C~vC~~~--g----~ll~CD~C~~~fH~~Cl~p~l~~------~---p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--G----EIILCDTCPRAYHMVCLDPDMEK------A---PEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--S----SEEECSSSSCEEEHHHHCTTCCS------C---CCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--C----cEEECCCCChhhhhhccCCCCCC------C---CCCceECccccc
Confidence 356779999873 2 2344 68889999998752111 1 123568999974
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.08 E-value=13 Score=27.30 Aligned_cols=53 Identities=17% Similarity=0.381 Sum_probs=31.5
Q ss_pred cCCCCccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCc
Q 024340 38 NSREEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 102 (269)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~ 102 (269)
....+...|.||.+.-+. + .+++ .|...|+..|+...+. ..| .+...||.|+.
T Consensus 11 ~~~~~~~~C~vC~~~~~~-~--~ll~CD~C~~~~H~~Cl~Ppl~------~~P---~g~W~C~~C~~ 65 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDED-D--KLLFCDGCDDNYHIFCLLPPLP------EIP---RGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCSSSCCSGGG-G--GCEECTTTCCEECSSSSSSCCS------SCC---SSCCCCHHHHH
T ss_pred hhccCCCCCccCCCcCCC-C--CEEEcCCCCchhccccCCCCcc------cCC---CCCcCCccCcC
Confidence 444566789999986542 0 2333 6777888888753111 111 23557999964
No 108
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.84 E-value=36 Score=24.64 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=12.4
Q ss_pred Cccccccccccccc
Q 024340 42 EGLECPICWESFNV 55 (269)
Q Consensus 42 e~l~CpICl~~f~~ 55 (269)
....|.+|.-+|+.
T Consensus 26 ~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 26 KLFRCIQCGFEYDE 39 (81)
T ss_dssp CEEEETTTCCEEET
T ss_pred ceEEeCCCCEEEcC
Confidence 57999999999986
No 109
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=30.85 E-value=52 Score=21.56 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=10.1
Q ss_pred ccccccccccccc
Q 024340 43 GLECPICWESFNV 55 (269)
Q Consensus 43 ~l~CpICl~~f~~ 55 (269)
...|.+|.-+|+.
T Consensus 3 ~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 3 IYVCTVCGYEYDP 15 (52)
T ss_dssp CEECSSSCCCCCT
T ss_pred cEEeCCCCeEEcC
Confidence 4678888888875
No 110
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=30.50 E-value=42 Score=23.46 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.6
Q ss_pred Cccccccccccccc
Q 024340 42 EGLECPICWESFNV 55 (269)
Q Consensus 42 e~l~CpICl~~f~~ 55 (269)
....|.+|.-+|+.
T Consensus 6 ~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 6 GKYECEACGYIYEP 19 (70)
T ss_dssp SCEEETTTCCEECT
T ss_pred ceEEeCCCCEEEcC
Confidence 46889999988886
No 111
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=29.76 E-value=31 Score=25.36 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=31.8
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCC-C--CCCCCCCccccccCCcc
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLP-T--LPFQLPFFITCPWCNMV 103 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~-~--~~~~~~~~i~CP~CR~~ 103 (269)
..+..|.||... ...+..|- --|+..|...|+++.-.-..... . .-........||.|...
T Consensus 13 ~~D~~C~VC~~~-t~~~l~pC-RvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAESLFPC-RVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCC-CSSCCSSC-SSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCccccc-cccceecc-ccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 356678998753 33221121 14788999999998511111100 0 00112336689999543
No 112
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.70 E-value=33 Score=25.13 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=12.9
Q ss_pred CCccccccccccccc
Q 024340 41 EEGLECPICWESFNV 55 (269)
Q Consensus 41 ee~l~CpICl~~f~~ 55 (269)
.....|.+|.-+|+.
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 467999999999986
No 113
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=29.19 E-value=7 Score=22.83 Aligned_cols=7 Identities=71% Similarity=1.407 Sum_probs=5.8
Q ss_pred Ccchhhh
Q 024340 1 MWNFASK 7 (269)
Q Consensus 1 ~~~~a~~ 7 (269)
||||-|-
T Consensus 15 MwNfvSG 21 (30)
T 2jxf_A 15 MWNFISG 21 (30)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8999875
No 114
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=28.03 E-value=52 Score=26.22 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=29.8
Q ss_pred CccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCc
Q 024340 42 EGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 102 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~ 102 (269)
.+..|.+|.+-=+ .+. .|-..||..|+...+....-... ....+...||.|+.
T Consensus 62 ~~d~C~vC~~GG~------LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i--~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN------LICCDFCHNAFCKKCILRNLGRKELSTI--MDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS------EEECSSSCCEEEHHHHHHHTCHHHHHHH--HTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc------EEeCCCCCCeeeHhhcCCCCChhhhhhc--ccCCCCCEeecccC
Confidence 4566888876322 122 68899999999965421000000 00012558999974
No 115
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.44 E-value=14 Score=33.98 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=0.0
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHhhHHH
Q 024340 41 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 76 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L-~CGHtFC~~CL~~ 76 (269)
.+...|..|...|.-..+ .... .||+.||..|...
T Consensus 373 ~~~~~c~~c~~~f~~~~r-~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLR-RHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp -------------------------------------
T ss_pred ccCCcCCCcCCCCCCcch-hhhcccCcCEeehhhCCC
Confidence 345679999998875322 2233 8999999999865
No 116
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=26.07 E-value=88 Score=26.63 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=9.2
Q ss_pred hhhhhhhhhhhccchH
Q 024340 246 AIPSCLVLYFALPILD 261 (269)
Q Consensus 246 ~~~~~~~~~~~~~~~~ 261 (269)
.+|.++++.+|+||+.
T Consensus 67 iiP~iil~~la~ps~~ 82 (227)
T 1v54_B 67 ILPAIILILIALPSLR 82 (227)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555666666666554
No 117
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.23 E-value=37 Score=22.68 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=28.7
Q ss_pred CCccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcc
Q 024340 41 EEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 103 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~ 103 (269)
.....|.+|.+. . -.++ .|...|+..|+...+. .. ..+...||.|+..
T Consensus 7 ~~~~~C~vC~~~-g-----~ll~Cd~C~~~fH~~Cl~ppl~------~~---p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-G-----ELLCCDTCPSSYHIHCLNPPLP------EI---PNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-S-----SCBCCSSSCCCBCSSSSSSCCS------SC---CSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-C-----CEEEcCCCCHHHcccccCCCcC------cC---CCCccCChhhcCc
Confidence 356679999862 1 1222 5777888888764211 11 1235689999754
No 118
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.08 E-value=6.7 Score=26.68 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=23.0
Q ss_pred ccccccccccccccCCCcEEe-c---CCCcchHhhHHHH
Q 024340 43 GLECPICWESFNVVENLPYVL-W---CGHTLCKNCVLGL 77 (269)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L-~---CGHtFC~~CL~~~ 77 (269)
.-.||-|.......+---.+. . |++.||..|...|
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 346888877776643333333 3 8888888888775
No 119
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.49 E-value=45 Score=22.87 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=17.5
Q ss_pred CccccccccccccccCCCcEEecCCCcchHhhH
Q 024340 42 EGLECPICWESFNVVENLPYVLWCGHTLCKNCV 74 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL 74 (269)
....|+-|.+.... .++..-+..|...|.
T Consensus 14 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF 42 (79)
T 1x62_A 14 KLPMCDKCGTGIVG----VFVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCCSSSCCCCCS----SCEECSSCEECTTTT
T ss_pred CCCccccCCCCccC----cEEEECcceeCcCcC
Confidence 45567888776665 344455666655553
No 120
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=24.01 E-value=79 Score=21.83 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCccccccccccccccCCCcEEe--c--CC-CcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcc
Q 024340 41 EEGLECPICWESFNVVENLPYVL--W--CG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 103 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L--~--CG-HtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~ 103 (269)
.+...| +|.+.... .++. . |. ..|+..|+.- .. . | .+...||.|+..
T Consensus 14 ~~~~~C-~C~~~~~g----~MI~CD~~~C~~~wfH~~Cvgl--~~-~-----p---~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYG----EMIGCDNPDCSIEWFHFACVGL--TT-K-----P---RGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCS----SEECCSCSSCSCCCEETTTTTC--SS-C-----C---SSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCC----CEeEeeCCCCCCccEecccCCc--Cc-C-----C---CCCEECCCCCcc
Confidence 466778 89987554 4333 4 55 5788999862 11 1 1 245689999764
No 121
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.99 E-value=46 Score=21.37 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=10.8
Q ss_pred Cccccccccccccc
Q 024340 42 EGLECPICWESFNV 55 (269)
Q Consensus 42 e~l~CpICl~~f~~ 55 (269)
....|.+|.-+|+.
T Consensus 3 ~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 3 QKYVCNVCGYEYDP 16 (46)
T ss_dssp CCEEETTTCCEECG
T ss_pred CEEECCCCCeEEeC
Confidence 34679999988875
No 122
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=23.97 E-value=1.1e+02 Score=27.18 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=14.4
Q ss_pred HHHhhhhhhhhhhhccchHHH
Q 024340 243 IVFAIPSCLVLYFALPILDWL 263 (269)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~ 263 (269)
+--.+|.++++.+++||+.=|
T Consensus 109 iWTiiP~iILi~La~pSl~~l 129 (298)
T 3hb3_B 109 IWTLVPVLILVAIGAFSLPIL 129 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 344577888888888887644
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=23.77 E-value=92 Score=24.34 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=29.1
Q ss_pred CccccccccccccccCCCcEEe--cCCCcchHhhHHHHH-----HhhccCCCCCCCCCCccccccCCc
Q 024340 42 EGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQ-----RAVIRLPTLPFQLPFFITCPWCNM 102 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~-----~~~~~~~~~~~~~~~~i~CP~CR~ 102 (269)
.+..|.+|.+-=+ .+. .|-..||..|+.... .+... + .+...|+.|+.
T Consensus 56 ~~~~C~vC~dGG~------LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~-~------~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGN------LICCDFCHNAFCKKCILRNLGRRELSTIMD-E------NNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSE------EEECSSSSCEEEHHHHHHHTCHHHHHHHTC-T------TSCCCCTTTCC
T ss_pred CCCcCeecCCCCe------eEecCCCchhhhHHHhCCCcchhHHHHhcc-C------CCCeEcCCcCC
Confidence 3455999986311 112 678999999999752 22110 0 12568999964
No 124
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.15 E-value=30 Score=26.33 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=7.2
Q ss_pred ccccCCccc
Q 024340 96 TCPWCNMVS 104 (269)
Q Consensus 96 ~CP~CR~~~ 104 (269)
.||.|+...
T Consensus 86 rCP~CkSe~ 94 (105)
T 2gmg_A 86 RCPKCKSEW 94 (105)
T ss_dssp SCSSSCCCC
T ss_pred CCcCCCCCc
Confidence 799998753
No 125
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.10 E-value=95 Score=20.09 Aligned_cols=16 Identities=25% Similarity=0.602 Sum_probs=13.1
Q ss_pred CCCccccccccccccc
Q 024340 40 REEGLECPICWESFNV 55 (269)
Q Consensus 40 lee~l~CpICl~~f~~ 55 (269)
.+..+.|++|...|..
T Consensus 14 ~~~~~~C~~C~k~f~~ 29 (74)
T 2lce_A 14 SDKPYKCDRCQASFRY 29 (74)
T ss_dssp CCCSBCCTTSSCCBSC
T ss_pred CCCCeECCCCCceeCC
Confidence 3467899999999887
No 126
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=22.07 E-value=55 Score=27.19 Aligned_cols=48 Identities=13% Similarity=0.240 Sum_probs=28.9
Q ss_pred CccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 42 EGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
....|.+|.+-= -.++ .|...|+..|+...+. . ...+...||.|+...
T Consensus 6 ~~~~C~~C~~~g------~ll~Cd~C~~~~H~~Cl~p~l~------~---~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG------DLLCCEKCPKVFHLTCHVPTLL------S---FPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE------EEEECSSSSCEECTTTSSSCCS------S---CCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC------ceEEcCCCCCccCCccCCCCCC------C---CCCCCEEeCceeCcc
Confidence 445699998531 1222 6788888888753211 1 112456899998753
No 127
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.97 E-value=41 Score=25.29 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=35.2
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.+-+.|..|...+.+.. ......=|..+|..|..+.+... + .|-.|.+.+.
T Consensus 30 ~~CF~C~~C~~~L~~~~-~~~~~~~g~~yC~~cy~~~f~~~---~----------~C~~C~~~I~ 80 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIG-TSSYTKSGMILCRNDYIRLFGNS---G----------AGGSGGHMGS 80 (122)
T ss_dssp HHHHCCSSSCCCTTTSE-ECCEEETTEEECHHHHHHHHCCC---C----------SSSCSSCCSC
T ss_pred hhCCCcCCCCCcccccC-CeEEEECCeeecHHHHHHHcCCC---C----------ccccCCCCcC
Confidence 46789999999886200 04556678889999998753210 1 5999998764
No 128
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.96 E-value=27 Score=22.89 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=28.4
Q ss_pred CCCccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCC
Q 024340 40 REEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCN 101 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR 101 (269)
..++..|.+|.+. . ..++ .|...|+..|+..-+. .. ..+...||.|.
T Consensus 6 ~~~~~~C~vC~~~--g----~ll~Cd~C~~~~H~~Cl~ppl~------~~---p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS--G----QLLMCDTCSRVYHLDCLDPPLK------TI---PKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS--S----CCEECSSSSCEECSSSSSSCCC------SC---CCSSCCCHHHH
T ss_pred CCCCCCCccCCCC--C----eEEEcCCCCcceECccCCCCcC------CC---CCCceEChhhh
Confidence 3456679999874 2 2333 6788888888864211 11 12355799885
No 129
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=21.78 E-value=44 Score=29.22 Aligned_cols=17 Identities=47% Similarity=0.592 Sum_probs=0.0
Q ss_pred hhcchhHHHHHHHHHHH
Q 024340 210 LTAKFPLIIVLILIILY 226 (269)
Q Consensus 210 ~t~~~~~v~~fl~~~~~ 226 (269)
+++=+.|||+|++.++|
T Consensus 220 l~al~slvigf~~ga~~ 236 (273)
T 1scf_A 220 LPALFSLIIGFAFGALY 236 (273)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67778899999999998
No 130
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.67 E-value=84 Score=22.00 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=20.9
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHhhH
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCV 74 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL 74 (269)
.....|+-|.+.+.. .++..-|..++..|.
T Consensus 23 ~~~~~C~~C~~~I~~----~~v~a~~~~~H~~CF 52 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG----PFLVALGKSWHPEEF 52 (90)
T ss_dssp TCCCBBSSSCCBCCS----CEEEETTEEECTTTC
T ss_pred CCCCCCccCCCEecc----eEEEECCccccccCC
Confidence 345679999987765 566666777777664
No 131
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.55 E-value=66 Score=23.48 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=30.2
Q ss_pred CCCCccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCc
Q 024340 39 SREEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 102 (269)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~ 102 (269)
..+....|.+|.+. . -.++ .|.-.|...|+..-+. .. ..+...||.|+.
T Consensus 21 ~d~n~~~C~vC~~~--g----~LL~CD~C~~~fH~~Cl~PpL~------~~---P~g~W~C~~C~~ 71 (88)
T 1fp0_A 21 LDDSATICRVCQKP--G----DLVMCNQCEFCFHLDCHLPALQ------DV---PGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSCCSSSCSS--S----CCEECTTSSCEECTTSSSTTCC------CC---CSSSCCCCSCCC
T ss_pred cCCCCCcCcCcCCC--C----CEEECCCCCCceecccCCCCCC------CC---cCCCcCCccccC
Confidence 34456689999974 1 2233 6777888888854211 11 124568999975
No 132
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.23 E-value=77 Score=22.49 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=21.6
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHh
Q 024340 40 REEGLECPICWESFNVVENLPYVLWCGHTLCKN 72 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~ 72 (269)
......|..|.+...- .+....||.+||..
T Consensus 22 k~~~~RC~~C~kkvgL---~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGV---TGFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTT---TCEECTTSCEECTT
T ss_pred cccCccchhhcCcccc---cceEeccCCEeccc
Confidence 3455679999875444 25667999999985
No 133
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.12 E-value=63 Score=22.31 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=20.7
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHh
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKN 72 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~ 72 (269)
.....|..|.+...- .+..--||.+||..
T Consensus 13 ~~~~rC~~C~kkvgl---~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGV---MGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTT---SCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccc---cCeEeecCCEeccc
Confidence 345679999885443 25667899999985
No 134
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.65 E-value=57 Score=24.46 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=35.4
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCccc
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 104 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~ 104 (269)
.+-+.|..|...+... ..+....=|..+|..|..+..... ..|..|.+.+
T Consensus 27 ~~CF~C~~C~~~L~~~-~~~~~~~~g~~yC~~~y~~~~~~~-------------~~C~~C~~~I 76 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEV-GRRLYYKLGRKLCRRDYLRLFGQD-------------GLCASCDKRI 76 (131)
T ss_dssp TTTCBCTTTCCBCSST-TCCEEEETTEEECHHHHHHHHCCC-------------EECTTTCCEE
T ss_pred HHHcccCcCCCccccC-CCeEEEECCEEeecCchhhhCCCc-------------cChhhcCCcc
Confidence 5789999999988521 115666678889999998753211 1599999876
No 135
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.54 E-value=55 Score=21.73 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCCccccccccccccccCCCcEEe--cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcc
Q 024340 40 REEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 103 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~ 103 (269)
.++...|++|...+++.+ .++- .|..-|+..|+.-. .... ..+....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~--~mI~Cd~C~~WfH~~Cvgl~-~~~~-------~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADE--FWICCDLCEMWFHGKCVKIT-PARA-------EHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSS--CEEECSSSCCEEETTTTTCC-TTGG-------GGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCC--CEEEccCCCCCCCccccCcC-hhHh-------cCCCcEECCCCcCc
Confidence 357788999999886422 3333 57777888887432 1100 11235689999754
No 136
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.33 E-value=74 Score=25.18 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=25.5
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHhhHHHH
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGL 77 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~ 77 (269)
.+-+.|..|...+.. -....=|..+|..|..+.
T Consensus 31 ~~CF~C~~C~~~L~~----~~f~~~g~~yC~~~y~~~ 63 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAE----RCFSRGESVYCKDDFFKR 63 (169)
T ss_dssp TTTSBCTTTCCBCCS----CCEESSSCEECHHHHHHH
T ss_pred cccCccCCCCCcCCC----CCcccCCeeeeccccccc
Confidence 578999999998876 223455788999998775
No 137
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.31 E-value=7 Score=28.48 Aligned_cols=12 Identities=25% Similarity=1.054 Sum_probs=8.8
Q ss_pred cccccccccccc
Q 024340 44 LECPICWESFNV 55 (269)
Q Consensus 44 l~CpICl~~f~~ 55 (269)
..||.|...+..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 678888876654
No 138
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=20.29 E-value=43 Score=23.00 Aligned_cols=48 Identities=17% Similarity=0.387 Sum_probs=29.7
Q ss_pred CCCccccccccccccccCCCcEEe---cCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCc
Q 024340 40 REEGLECPICWESFNVVENLPYVL---WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 102 (269)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L---~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~ 102 (269)
..+...| +|....+. -.++ .|..-|...|+.-. . . ..+....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~----~~MIqCd~C~~WfH~~Cvgi~-~-----~----~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAG----RPMIECNECHTWIHLSCAKIR-K-----S----NVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTT----CCEEECTTTCCEEETTTTTCC-T-----T----SCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCC----CCEEECCCCCccccccccCcC-c-----c----cCCCcEECCCCCC
Confidence 3467778 99987764 3344 46667777776431 0 0 1234668999964
No 139
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.03 E-value=66 Score=23.95 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=35.3
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccc
Q 024340 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 105 (269)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~ 105 (269)
.+-+.|..|...+.. .+....=|..+|..|..+.. . ..|..|.+.+.
T Consensus 28 ~~CF~C~~C~~~L~~---~~f~~~~g~~yC~~cy~~~~--~-------------~~C~~C~~~I~ 74 (126)
T 2xqn_T 28 LKHFCCFDCDSILAG---EIYVMVNDKPVCKPCYVKNH--A-------------VVCQGCHNAID 74 (126)
T ss_dssp GGGSBCTTTCCBCTT---SEEEEETTEEEEHHHHHHHS--C-------------CBCTTTCSBCC
T ss_pred CCCCCcCCCCCCCCc---CEEEeECCEEechHHhCcCc--C-------------ccCcccCCcCC
Confidence 567999999998875 24556778899999987641 1 16999998763
Done!