BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024341
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RLS|A Chain A, Crystal Structure Of Yeast Af-9 Homolog Protein Yaf9
pdb|3RLS|B Chain B, Crystal Structure Of Yeast Af-9 Homolog Protein Yaf9
Length = 175
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 17/169 (10%)
Query: 37 LKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHP 92
+K + + PI+YG A +G A +H WT++VRG NEDI IK+VVF+LH
Sbjct: 1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHD 60
Query: 93 SFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS- 151
++ NP R +E+PPFEL E GWGEF+I I ++F + +K L+ YH L+L+P A P S
Sbjct: 61 TYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSD 120
Query: 152 -----------TKKPVVMESY-NEIVFPEPAEGFFARVLNHPAVVVPRL 188
+K V Y +EIVF EP E FF +++ P ++P L
Sbjct: 121 NGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSL 169
>pdb|3FK3|A Chain A, Structure Of The Yeats Domain, Yaf9
pdb|3FK3|B Chain B, Structure Of The Yeats Domain, Yaf9
pdb|3FK3|C Chain C, Structure Of The Yeats Domain, Yaf9
Length = 164
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 89/156 (57%), Gaps = 17/156 (10%)
Query: 36 RLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLH 91
R+K + + PI+YG A G A +H WT++VRG NEDI IK+VVF+LH
Sbjct: 3 RIKTLSVSRPIIYGNTAKKXGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLH 62
Query: 92 PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS 151
++ NP R +E+PPFEL E GWGEF+I I ++F + +K L+ YH L+L+P A P S
Sbjct: 63 DTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNS 122
Query: 152 ------------TKKPVVMESY-NEIVFPEPAEGFF 174
+K V Y +EIVF EP E FF
Sbjct: 123 DNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFF 158
>pdb|3QRL|A Chain A, Crystal Structure Of The Taf14 Yeats Domain
Length = 140
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 80 GVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFF 124
+ +V++ LHP+F NP R PPF ++E GWG F + IS+F
Sbjct: 51 ATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 95
>pdb|2L7E|A Chain A, The Structure Of A Domain From Yeast
Length = 131
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 80 GVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFF 124
+ +V++ LHP+F NP R PPF ++E GWG F + IS+F
Sbjct: 48 ATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 92
>pdb|3G7Y|A Chain A, Crystal Structure Of Oxidized Ost6l
pdb|3G9B|A Chain A, Crystal Structure Of Reduced Ost6l
pdb|3GA4|A Chain A, Crystal Structure Of Ost6l (Photoreduced Form)
Length = 178
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 119 AISLFFHSDVCDKP-----LDLYH--HLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAE 171
+++LFF DV + P L L + HL +YP AES +S + Y + PE AE
Sbjct: 80 SLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAE 139
Query: 172 G------FFARVLNHPAVVVPR 187
F A++LN ++ VP+
Sbjct: 140 NTLQFGDFLAKILN-ISITVPQ 160
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 88 FQLHPSFNNPTRVVESPP--FELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEA 145
+H + T+ + +P E+++ W + I + F SDV D LYHH++ +PE
Sbjct: 3 LSVHMDMASVTKAMAAPESGLEVRDRMWLKITIP-NAFLGSDVVDW---LYHHVEGFPER 58
Query: 146 ESGPKST----KKPVVMESYNEIVFPEPAEGFFA 175
K K ++ + N+I F E F
Sbjct: 59 REARKYASGLLKAGLIRHTVNKITFSEQCYYVFG 92
>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 544
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 10 CASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTV 69
C + S PP +++ + D + I ++ D+ I VYGT A S + V
Sbjct: 250 CVNPSNPPSVKMDQRSLDRVRAIVAEQRPDLLILTDDVYGTFADEFQSLFSVCPRNTLLV 309
Query: 70 Y----VRGATNEDIGVV 82
Y GAT +GV+
Sbjct: 310 YSFSKYFGATGWRLGVI 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,230,680
Number of Sequences: 62578
Number of extensions: 343005
Number of successful extensions: 585
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 13
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)