Query 024341
Match_columns 269
No_of_seqs 207 out of 423
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rls_A YAF9, protein AF-9 homo 100.0 5.9E-56 2E-60 384.6 17.7 150 37-186 1-167 (175)
2 3qrl_A Transcription initiatio 100.0 1.5E-36 5.3E-41 254.8 14.8 127 40-182 8-139 (140)
3 2l5g_B Putative uncharacterize 69.1 5.8 0.0002 26.7 3.8 29 227-255 9-37 (42)
4 2wuj_A Septum site-determining 51.4 17 0.00057 25.4 3.8 30 228-257 28-57 (57)
5 3rcz_B SUMO-conjugating enzyme 43.6 45 0.0016 27.4 6.0 48 49-96 29-76 (163)
6 3efg_A Protein SLYX homolog; x 42.8 27 0.00092 25.9 4.0 37 227-263 28-64 (78)
7 2gjd_A Ubiquitin-conjugating e 42.3 49 0.0017 26.8 5.9 35 62-96 36-70 (157)
8 2l5g_B Putative uncharacterize 37.4 6.4 0.00022 26.6 -0.2 28 232-259 7-34 (42)
9 2grr_A Ubiquitin-conjugating e 37.3 66 0.0023 26.2 6.0 36 61-96 38-73 (161)
10 2fxo_A Myosin heavy chain, car 36.8 52 0.0018 26.1 5.1 34 225-258 95-128 (129)
11 2lw1_A ABC transporter ATP-bin 35.7 46 0.0016 24.7 4.4 31 222-252 17-47 (89)
12 1go4_E MAD1 (mitotic arrest de 34.9 49 0.0017 25.9 4.5 37 219-255 60-96 (100)
13 3h8k_A Ubiquitin-conjugating e 34.2 81 0.0028 25.6 6.0 35 62-96 31-65 (164)
14 1zdn_A Ubiquitin-conjugating e 31.4 94 0.0032 25.1 6.0 35 62-96 40-74 (158)
15 2onu_A Ubiquitin-conjugating e 29.7 95 0.0033 25.0 5.7 35 62-96 26-60 (152)
16 3rz3_A Ubiquitin-conjugating e 29.5 1E+02 0.0035 25.6 6.0 36 61-96 34-69 (183)
17 2fo3_A Ubiquitin-conjugating e 29.2 1.2E+02 0.0041 23.5 6.0 34 62-95 33-66 (125)
18 2aak_A UBC1, ubiquitin conjuga 29.0 1E+02 0.0034 24.7 5.7 35 62-96 31-65 (152)
19 1hwt_C Protein (heme activator 28.9 31 0.0011 24.4 2.3 24 240-263 57-80 (81)
20 2h2y_A Ubiquitin-conjugating e 28.8 1.2E+02 0.0041 24.0 6.0 35 62-96 47-81 (136)
21 4gpr_A Ubiquitin-conjugating e 26.1 1.3E+02 0.0043 24.1 5.8 34 62-95 31-64 (151)
22 2a7l_A Hypothetical ubiquitin- 25.7 1.9E+02 0.0064 23.0 6.7 35 61-95 50-84 (136)
23 1jat_A Ubiquitin-conjugating e 25.4 1.3E+02 0.0044 24.2 5.7 35 62-96 32-66 (155)
24 1fxt_A Ubiquitin-conjugating e 24.8 1.6E+02 0.0054 23.4 6.1 34 63-96 30-63 (149)
25 2e2c_A Ubiquitin conjugating e 24.5 1.4E+02 0.0049 23.9 5.9 35 62-96 36-70 (156)
26 2bep_A Ubiquitin-conjugating e 24.4 1.5E+02 0.0053 23.8 6.1 35 62-96 38-72 (159)
27 2v4h_A NF-kappa-B essential mo 24.1 32 0.0011 27.5 1.7 28 234-261 83-110 (110)
28 2cly_B ATP synthase D chain, m 23.8 82 0.0028 26.2 4.3 33 225-257 93-125 (160)
29 2yy0_A C-MYC-binding protein; 23.7 61 0.0021 22.3 2.9 32 227-258 19-50 (53)
30 2y9m_A Ubiquitin-conjugating e 23.6 1.6E+02 0.0056 24.1 6.1 36 61-96 44-79 (172)
31 1nkp_B MAX protein, MYC proto- 23.4 41 0.0014 24.5 2.1 34 228-261 48-81 (83)
32 2ayv_A Ubiquitin-conjugating e 23.1 1.6E+02 0.0056 24.1 6.0 35 62-96 48-82 (166)
33 1jnm_A Proto-oncogene C-JUN; B 22.8 1.3E+02 0.0044 20.8 4.6 31 227-257 29-59 (62)
34 1ayz_A UBC2, ubiquitin-conjuga 22.6 1.5E+02 0.0051 24.4 5.7 34 62-95 31-64 (169)
35 2aze_B Transcription factor E2 22.5 1.1E+02 0.0036 23.8 4.5 29 226-254 12-40 (106)
36 2r0j_A Ubiquitin carrier prote 22.4 1.6E+02 0.0056 23.4 5.8 35 62-96 28-62 (149)
37 1z2u_A Ubiquitin-conjugating e 22.3 1.6E+02 0.0054 23.5 5.7 35 62-96 31-65 (150)
38 3bzh_A Ubiquitin-conjugating e 22.1 1.5E+02 0.0053 25.0 5.8 35 62-96 75-109 (194)
39 3m91_A Proteasome-associated A 22.1 1E+02 0.0035 21.2 3.8 23 231-253 27-49 (51)
40 2c2v_B Ubiquitin-conjugating e 21.8 1.9E+02 0.0063 23.2 6.0 35 62-96 32-66 (154)
41 1i7k_A Ubiquitin-conjugating e 21.5 1.5E+02 0.0053 24.6 5.6 35 62-96 57-91 (179)
42 1yf9_A Ubiquitin carrier prote 20.6 1.9E+02 0.0064 23.9 5.9 35 62-96 35-69 (171)
43 1zym_A Enzyme I; phosphotransf 20.4 1E+02 0.0036 27.2 4.5 27 225-251 36-62 (258)
44 2c4o_A Ubiquitin-conjugating e 20.4 2E+02 0.0067 23.5 6.0 35 62-96 46-80 (165)
45 1yrv_A Ubiquitin-conjugating l 20.4 1.8E+02 0.0061 23.9 5.7 35 62-96 50-84 (169)
46 2yy0_A C-MYC-binding protein; 20.4 1.5E+02 0.0051 20.3 4.4 28 226-253 25-52 (53)
No 1
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=100.00 E-value=5.9e-56 Score=384.63 Aligned_cols=150 Identities=43% Similarity=0.845 Sum_probs=134.0
Q ss_pred eeceEEEEEEEEccceEEcCCC----CCCCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCcceeecCCcEEEEee
Q 024341 37 LKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECG 112 (269)
Q Consensus 37 ~k~~~I~~pIvyGn~A~~l~kk----~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G 112 (269)
|||++|+|||||||+|++|+++ +++++||+|+|||||++++|+++||+||+|+|||||+||+|+|++|||+|+|+|
T Consensus 1 vk~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G 80 (175)
T 3rls_A 1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG 80 (175)
T ss_dssp CCCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE
T ss_pred CCceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE
Confidence 6899999999999999999963 567899999999999999999999999999999999999999999999999999
Q ss_pred EeeEEEEEEEEEeeCCCCCCeEEEEeeecCCCCCCC-------C------CCCCCCeeEEeeeEEEecCCCHHHHHHHhc
Q 024341 113 WGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESG-------P------KSTKKPVVMESYNEIVFPEPAEGFFARVLN 179 (269)
Q Consensus 113 WGEF~I~IkI~F~~d~~ekp~~l~H~L~L~p~~~~~-------~------~~~~~pvv~e~ydeIvF~nPse~f~~~L~~ 179 (269)
||||+|.|+|||++++++|+++|+|+|+||+++.+. . ..+++||++|+||||||+||+|.||++|++
T Consensus 81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~ 160 (175)
T 3rls_A 81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMS 160 (175)
T ss_dssp SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHh
Confidence 999999999999988899999999999999986441 1 124789999999999999999999999999
Q ss_pred CCCccCC
Q 024341 180 HPAVVVP 186 (269)
Q Consensus 180 ~~~~~~~ 186 (269)
+|++++|
T Consensus 161 ~p~~~lp 167 (175)
T 3rls_A 161 RPGNLLP 167 (175)
T ss_dssp STTCCSC
T ss_pred CCCccCC
Confidence 9987654
No 2
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=100.00 E-value=1.5e-36 Score=254.84 Aligned_cols=127 Identities=24% Similarity=0.481 Sum_probs=106.7
Q ss_pred eEEEEEEEEccceEEcCCCC--CCCCceeEE--EEEeCCCCCCcc-cceeeEEEEeCCCCCCCcceeecCCcEEEEeeEe
Q 024341 40 VEICVPIVYGTMAFHLGRKA--SESQSHRWT--VYVRGATNEDIG-VVIKRVVFQLHPSFNNPTRVVESPPFELQECGWG 114 (269)
Q Consensus 40 ~~I~~pIvyGn~A~~l~kk~--~~~~tH~Wt--VyVr~~~~edls-~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWG 114 (269)
|.....|+.+.. .+++.. .+.++|+|+ |||||.+++|++ +||+||+|+|||||+||+|+|++|||+|+|+|||
T Consensus 8 vkrtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWG 85 (140)
T 3qrl_A 8 VKRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWG 85 (140)
T ss_dssp EEEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESS
T ss_pred eEEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEee
Confidence 334444444444 565543 335779999 899999999885 8999999999999999999999999999999999
Q ss_pred eEEEEEEEEEeeCCCCCCeEEEEeeecCCCCCCCCCCCCCCeeEEeeeEEEecCCCHHHHHHHhcCCC
Q 024341 115 EFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPA 182 (269)
Q Consensus 115 EF~I~IkI~F~~d~~ekp~~l~H~L~L~p~~~~~~~~~~~pvv~e~ydeIvF~nPse~f~~~L~~~~~ 182 (269)
||+|.|+|||++++ ++++|.|+|+|+++. ++.+++|+|+||++.|+++|+..++
T Consensus 86 eF~i~I~i~f~~~~--~~~~i~H~L~f~~~~------------y~~~h~i~f~np~~~l~~~L~~~Gp 139 (140)
T 3qrl_A 86 GFPLDISVFLLEKA--GERKIPHDLNFLQES------------YEVEHVIQIPLNKPLLTEELAKSGS 139 (140)
T ss_dssp CCCEEEEEEEGGGT--EEEEEEECCCSSSSE------------EEEEEEEEEESCSHHHHHHHTTTSC
T ss_pred eEEEEEEEEEecCC--CcEEEEEEEEeCCCC------------CcceEEEEECCCCHHHHHHHHHhCC
Confidence 99999999999654 478999999998653 5678899999999999999998654
No 3
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=69.12 E-value=5.8 Score=26.74 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 024341 227 DELLKIASARQQVQAHIIKLRRELNMMNG 255 (269)
Q Consensus 227 ~El~~l~~a~~~V~~~i~~lk~~l~~~e~ 255 (269)
.-++|++.-..++.+.|.+|+.+++.++.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888889999999999999988764
No 4
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=51.37 E-value=17 Score=25.36 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 024341 228 ELLKIASARQQVQAHIIKLRRELNMMNGLP 257 (269)
Q Consensus 228 El~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 257 (269)
-|+++...-..+.++++.|++++..++.++
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478899999999999999999999887653
No 5
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=43.58 E-value=45 Score=27.43 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=31.3
Q ss_pred ccceEEcCCCCCCCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 49 GTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 49 Gn~A~~l~kk~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
|..+.......+..+...|.+-+.|+.+..-..-+=++.+.+.+.|+.
T Consensus 29 gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~ 76 (163)
T 3rcz_B 29 GFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPT 76 (163)
T ss_dssp TCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCC
Confidence 444444332222237899999999987665555556677778888873
No 6
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.80 E-value=27 Score=25.93 Aligned_cols=37 Identities=5% Similarity=-0.059 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 024341 227 DELLKIASARQQVQAHIIKLRRELNMMNGLPPPPNPA 263 (269)
Q Consensus 227 ~El~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~~ 263 (269)
+.++.|..+..+=+.+|++|++++..+.++++.+.++
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5688889998889999999999999999888887765
No 7
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=42.27 E-value=49 Score=26.83 Aligned_cols=35 Identities=6% Similarity=0.218 Sum_probs=25.0
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
.+...|.+.|.|+.+..-..=+=++.+.+.+.|+.
T Consensus 36 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 70 (157)
T 2gjd_A 36 MDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPS 70 (157)
T ss_dssp EEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTT
T ss_pred CcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCC
Confidence 47899999999987654433445567777788873
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.40 E-value=6.4 Score=26.56 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 024341 232 IASARQQVQAHIIKLRRELNMMNGLPPP 259 (269)
Q Consensus 232 l~~a~~~V~~~i~~lk~~l~~~e~~~~~ 259 (269)
|.....+|+.||++.++++.++.+.+.+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566789999999999999988765443
No 9
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=37.35 E-value=66 Score=26.17 Aligned_cols=36 Identities=6% Similarity=0.154 Sum_probs=25.1
Q ss_pred CCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 61 ESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 61 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+++...|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 38 ~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 73 (161)
T 2grr_A 38 TMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPS 73 (161)
T ss_dssp CEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCC
Confidence 357899999999987654433344667777788773
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.77 E-value=52 Score=26.09 Aligned_cols=34 Identities=9% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 024341 225 EADELLKIASARQQVQAHIIKLRRELNMMNGLPP 258 (269)
Q Consensus 225 E~~El~~l~~a~~~V~~~i~~lk~~l~~~e~~~~ 258 (269)
+.+....|.+++.++..++..|+.+|..++..++
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~led~e~~l~ 128 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDIDDLELTLA 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566788999999999999999999999988776
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.66 E-value=46 Score=24.71 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024341 222 NFSEADELLKIASARQQVQAHIIKLRRELNM 252 (269)
Q Consensus 222 ~~~E~~El~~l~~a~~~V~~~i~~lk~~l~~ 252 (269)
.+.++.||+.|..-+.++.++|+.|..+|..
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999988865
No 12
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.88 E-value=49 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=29.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 024341 219 WFMNFSEADELLKIASARQQVQAHIIKLRRELNMMNG 255 (269)
Q Consensus 219 ~f~~~~E~~El~~l~~a~~~V~~~i~~lk~~l~~~e~ 255 (269)
.|+.-....-.+.......++++|+++||.++..++.
T Consensus 60 H~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 60 HMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp EESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555666667788899999999999999998875
No 13
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=34.24 E-value=81 Score=25.57 Aligned_cols=35 Identities=6% Similarity=0.205 Sum_probs=26.8
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+-|.|+.+..-..=+=++.+.+.+.|+.
T Consensus 31 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 65 (164)
T 3h8k_A 31 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65 (164)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCC
Confidence 46889999999987765555566678888888873
No 14
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=31.37 E-value=94 Score=25.14 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=24.3
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 40 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 74 (158)
T 1zdn_A 40 EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74 (158)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CChhheeEEEECCCCCCccCcEEEEEEEcCCCCCC
Confidence 46889999999987654333344566667777763
No 15
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=29.65 E-value=95 Score=25.05 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.7
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+-+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 26 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 60 (152)
T 2onu_A 26 GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPF 60 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CccceEEEEEECCCCCcccceEEEEEEcCcccCCC
Confidence 47899999999987655444445666667777763
No 16
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=29.48 E-value=1e+02 Score=25.65 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=26.8
Q ss_pred CCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 61 ESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 61 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+++...|.+-+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 34 ~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 69 (183)
T 3rz3_A 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69 (183)
T ss_dssp TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCC
Confidence 457889999999987665544455677778888873
No 17
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=29.17 E-value=1.2e+02 Score=23.49 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=23.3
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFN 95 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 95 (269)
+....|.+-+.|+.+..-..=+=++.+.+.+.|+
T Consensus 33 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP 66 (125)
T 2fo3_A 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66 (125)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCC
Confidence 4788999999998765443334456666667776
No 18
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=28.99 E-value=1e+02 Score=24.72 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
++...|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 31 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 65 (152)
T 2aak_A 31 NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCC
Confidence 46889999999986654433445667777788873
No 19
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.92 E-value=31 Score=24.35 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCC
Q 024341 240 QAHIIKLRRELNMMNGLPPPPNPA 263 (269)
Q Consensus 240 ~~~i~~lk~~l~~~e~~~~~~k~~ 263 (269)
...|+.|.+++..+|..++.|..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~~~ 80 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVHSS 80 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 368899999999999999998764
No 20
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=28.78 E-value=1.2e+02 Score=23.96 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=24.0
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
++...|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 47 ~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~ 81 (136)
T 2h2y_A 47 SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPL 81 (136)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred ccccccEEEEECCCCCceeCCEEEEEEEeCCCCCC
Confidence 47889999999987654433344566666777763
No 21
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=26.11 E-value=1.3e+02 Score=24.14 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=25.7
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFN 95 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 95 (269)
++...|.+-+.|+.+..-..=+=++.+.+-+.|+
T Consensus 31 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (151)
T 4gpr_A 31 DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64 (151)
T ss_dssp SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTT
T ss_pred CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCC
Confidence 4688999999998766555555567777778887
No 22
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=25.70 E-value=1.9e+02 Score=22.97 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=24.2
Q ss_pred CCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCC
Q 024341 61 ESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFN 95 (269)
Q Consensus 61 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 95 (269)
+++...|.+.+.|+.+..-..=+=++.+.+-+.|+
T Consensus 50 ~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 84 (136)
T 2a7l_A 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84 (136)
T ss_dssp CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTT
T ss_pred ccccceeEEEEECCCCCccccEEEEEEEECCCCCC
Confidence 45789999999998765443334456666667776
No 23
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=25.39 E-value=1.3e+02 Score=24.18 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
++...|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 32 ~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 66 (155)
T 1jat_A 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 66 (155)
T ss_dssp TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTT
T ss_pred CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCC
Confidence 47889999999987654433455566667777763
No 24
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=24.82 E-value=1.6e+02 Score=23.43 Aligned_cols=34 Identities=9% Similarity=-0.079 Sum_probs=23.8
Q ss_pred CceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 63 QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 63 ~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
....|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 30 ~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 63 (149)
T 1fxt_A 30 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63 (149)
T ss_dssp CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTS
T ss_pred CceEEEEEEECCCCCCcCCcEEEEEEECCCCCCC
Confidence 6889999999986654433344566667777763
No 25
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=24.46 E-value=1.4e+02 Score=23.90 Aligned_cols=35 Identities=6% Similarity=0.284 Sum_probs=24.6
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 36 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 70 (156)
T 2e2c_A 36 DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70 (156)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCC
Confidence 47889999999987654433344667777778763
No 26
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=24.36 E-value=1.5e+02 Score=23.80 Aligned_cols=35 Identities=3% Similarity=-0.023 Sum_probs=24.7
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+-+.|+.
T Consensus 38 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 72 (159)
T 2bep_A 38 ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPF 72 (159)
T ss_dssp SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CchheEEEEEECCCCCCccCCEEEEEEeCCCcCCC
Confidence 46889999999987654433344577777788773
No 27
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.12 E-value=32 Score=27.49 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 024341 234 SARQQVQAHIIKLRRELNMMNGLPPPPN 261 (269)
Q Consensus 234 ~a~~~V~~~i~~lk~~l~~~e~~~~~~k 261 (269)
+||.+...+++.|..+|..+..+.+.|+
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 4667777777777777777766665553
No 28
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=23.78 E-value=82 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 024341 225 EADELLKIASARQQVQAHIIKLRRELNMMNGLP 257 (269)
Q Consensus 225 E~~El~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 257 (269)
|.+-+..+.+..+.+.++|+.|..+|..++..+
T Consensus 93 e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~~~ 125 (160)
T 2cly_B 93 EKEDVKSCAEFLTQSKTRIQEYEKELEKMRNII 125 (160)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455677778888999999999999999988754
No 29
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.69 E-value=61 Score=22.33 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 024341 227 DELLKIASARQQVQAHIIKLRRELNMMNGLPP 258 (269)
Q Consensus 227 ~El~~l~~a~~~V~~~i~~lk~~l~~~e~~~~ 258 (269)
.+++.|..=....++.++.|++++.++..++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777777777777777777766665544
No 30
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=23.56 E-value=1.6e+02 Score=24.13 Aligned_cols=36 Identities=14% Similarity=0.365 Sum_probs=25.5
Q ss_pred CCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 61 ESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 61 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
++....|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 44 ~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 79 (172)
T 2y9m_A 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPM 79 (172)
T ss_dssp TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCC
Confidence 457889999999987655444455666777788763
No 31
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.44 E-value=41 Score=24.50 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 024341 228 ELLKIASARQQVQAHIIKLRRELNMMNGLPPPPN 261 (269)
Q Consensus 228 El~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 261 (269)
=|..|....+....+++.|+++...++.+++.|.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555666666666666666555543
No 32
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=23.10 E-value=1.6e+02 Score=24.06 Aligned_cols=35 Identities=6% Similarity=0.166 Sum_probs=24.6
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+-+.|+.
T Consensus 48 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 82 (166)
T 2ayv_A 48 DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82 (166)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCC
Confidence 46889999999987655444455566667777763
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.79 E-value=1.3e+02 Score=20.79 Aligned_cols=31 Identities=6% Similarity=0.180 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 024341 227 DELLKIASARQQVQAHIIKLRRELNMMNGLP 257 (269)
Q Consensus 227 ~El~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 257 (269)
.++..|.........+|..|+.++..+.+.+
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778888888888877776654
No 34
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=22.64 E-value=1.5e+02 Score=24.40 Aligned_cols=34 Identities=9% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFN 95 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 95 (269)
++...|.+.+.|+.+..-..=+=++.+.+-+.|+
T Consensus 31 ~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP 64 (169)
T 1ayz_A 31 DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64 (169)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccccceEEEECCCCCCcCCCEEEEEEECcccCC
Confidence 4688999999998665443334456666677776
No 35
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.48 E-value=1.1e+02 Score=23.84 Aligned_cols=29 Identities=14% Similarity=0.293 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024341 226 ADELLKIASARQQVQAHIIKLRRELNMMN 254 (269)
Q Consensus 226 ~~El~~l~~a~~~V~~~i~~lk~~l~~~e 254 (269)
+.|+..|....+.++++|..++++|+.+-
T Consensus 12 k~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 12 TQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999988764
No 36
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=22.40 E-value=1.6e+02 Score=23.39 Aligned_cols=35 Identities=6% Similarity=0.127 Sum_probs=24.7
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 28 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 62 (149)
T 2r0j_A 28 ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPM 62 (149)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCC
Confidence 46899999999987654443455566677777763
No 37
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=22.28 E-value=1.6e+02 Score=23.46 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=24.5
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
++...|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 31 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 65 (150)
T 1z2u_A 31 DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65 (150)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCC
Confidence 46889999999987655444445566667777763
No 38
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=22.08 E-value=1.5e+02 Score=24.96 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=24.5
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
++...|.+.|.|+.+..-..=+=++.+.+.+.|+.
T Consensus 75 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 109 (194)
T 3bzh_A 75 DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109 (194)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CccccceEEEeCCCCCCccCCEEEEEEECCCcCCC
Confidence 46889999999987654444455566667777763
No 39
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.07 E-value=1e+02 Score=21.21 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 024341 231 KIASARQQVQAHIIKLRRELNMM 253 (269)
Q Consensus 231 ~l~~a~~~V~~~i~~lk~~l~~~ 253 (269)
+|.++-+.-..+|..|++++..+
T Consensus 27 rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666666666666553
No 40
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=21.79 E-value=1.9e+02 Score=23.23 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=24.0
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 32 ~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~ 66 (154)
T 2c2v_B 32 SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 66 (154)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCC
Confidence 47889999999987654433344566666777763
No 41
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=21.51 E-value=1.5e+02 Score=24.64 Aligned_cols=35 Identities=9% Similarity=0.249 Sum_probs=24.8
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 57 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 91 (179)
T 1i7k_A 57 DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91 (179)
T ss_dssp TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTT
T ss_pred CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCC
Confidence 47889999999987654444455666677777763
No 42
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=20.58 E-value=1.9e+02 Score=23.87 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=23.9
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+-+.|+.+..-..=+=++.+.+-+.|+.
T Consensus 35 ~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~ 69 (171)
T 1yf9_A 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 69 (171)
T ss_dssp SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCceEEEEEEECCCCCCccCceEEEEEEcCCCCCC
Confidence 46889999999987654433444566666677763
No 43
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=20.45 E-value=1e+02 Score=27.18 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024341 225 EADELLKIASARQQVQAHIIKLRRELN 251 (269)
Q Consensus 225 E~~El~~l~~a~~~V~~~i~~lk~~l~ 251 (269)
-..|+.||..|..++.++++.+++++.
T Consensus 36 ~~~E~~rl~~Al~~~~~eL~~l~~~~~ 62 (258)
T 1zym_A 36 VDQEVERFLSGRAKASAQLETIKTKAG 62 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999888764
No 44
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=20.43 E-value=2e+02 Score=23.50 Aligned_cols=35 Identities=6% Similarity=0.176 Sum_probs=24.1
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+-+.|+.
T Consensus 46 ~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~ 80 (165)
T 2c4o_A 46 DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80 (165)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCcceeEEEEECCCCCCccCceEEEEEECCCcCCC
Confidence 46789999999987655433444566666777763
No 45
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=20.43 E-value=1.8e+02 Score=23.93 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=23.9
Q ss_pred CCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCC
Q 024341 62 SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNN 96 (269)
Q Consensus 62 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 96 (269)
+....|.+.+.|+.+..-..=+=++.+.+-+.|+.
T Consensus 50 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 84 (169)
T 1yrv_A 50 EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNY 84 (169)
T ss_dssp TTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTT
T ss_pred CccccceeEEECCCCCCccceEEEEEEECCccCCC
Confidence 46789999999987654433344566666777763
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.36 E-value=1.5e+02 Score=20.33 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024341 226 ADELLKIASARQQVQAHIIKLRRELNMM 253 (269)
Q Consensus 226 ~~El~~l~~a~~~V~~~i~~lk~~l~~~ 253 (269)
+.|+..|..-...+.+++++|+.+|...
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677888888888899999999998754
Done!