BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024343
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 108/170 (63%), Gaps = 14/170 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG+II +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 10 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 69
Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
P+ MRGV+S GMLL AS + + VE L+PP GS PGE ++ E D+E +P
Sbjct: 70 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKP---- 125
Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
KKK++E +Q K +A + T G++ +SLK NIS
Sbjct: 126 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 170
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
pdb|1EUJ|B Chain B, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
Length = 166
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LD+R+G II A +H +ADSLYVEEVDVGE PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 9 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 68
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
P MRGV S M++ AS + E +E+L PP GSVPG+RI F + + DKE P
Sbjct: 69 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 120
Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
KKKIWE +QP L T+ VA G G ++++ N+ I
Sbjct: 121 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 165
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LD+R+G II A +H +ADSLYVEEVDVGE PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 9 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 68
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
P MRGV S M++ AS + E +E+L PP GSVPG+RI F + + DKE P
Sbjct: 69 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 120
Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
KKKIWE +QP L T+ VA G G ++++ N+ I
Sbjct: 121 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 165
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LD+R+G II A +H +ADSLYVEEVDVGE PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 6 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 65
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
P MRGV S M++ AS + E +E+L PP GSVPG+RI F + + DKE P
Sbjct: 66 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 117
Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
KKKIWE +QP L T+ VA G G ++++ N+ I
Sbjct: 118 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 162
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From
Pyrococcus Abyssi
Length = 107
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LD+RVG+II+ H AD LYV +VD+G+ E R + +GL KY E L +R VVV+ANL+
Sbjct: 11 LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 69
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
P+ +RG+ S GMLLAA D E V LL P + G ++
Sbjct: 70 PKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 106
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 96 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDR 155
V D A LD+RVG+II+ H AD LYV +VD+G+ E R + +GL KY E L +R
Sbjct: 618 VKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNR 675
Query: 156 SVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
VVV+ANL+P+ +RG+ S GMLLAA D E V LL P + G ++
Sbjct: 676 YVVVVANLEPKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 721
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111
Length = 118
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
L++RVG+I++ RHE AD LY+ +VDVG+ + + S LV Y E L ++VVVL NL+
Sbjct: 12 LEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVLCNLQ 70
Query: 165 PRNMRGVKSHGMLLAA-SDAAHENVELLEPPQGSVPGERI 203
MRG S MLL A +D E+V LL P + G R+
Sbjct: 71 KAKMRGETSECMLLCAETDDGSESV-LLTPERMMPAGVRV 109
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|B Chain B, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|C Chain C, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|D Chain D, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
Length = 111
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
+D+RV +++ A R E ++ L + +G+ E R + +G+ KY E L + +V++ANLK
Sbjct: 15 VDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLK 73
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
PR + G++S GM+LAASD EN+ ++ P + G ++
Sbjct: 74 PRKIFGIESQGMILAASDG--ENLSVIVPDRDVKEGAKL 110
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus
Horikoshii
Length = 112
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVV 159
D ++VG + KA + + L VD G E R I +G+ +P E L+ + +
Sbjct: 10 DEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIF 68
Query: 160 LANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
+ NLKP+ GV+S GML+ A + V L+ P+ G R+W
Sbjct: 69 VVNLKPKKFSGVESQGMLILA-ETEDGKVYLIPVPEEVPVGARVW 112
>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
pdb|2E8G|B Chain B, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
Length = 241
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 98 VKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSV 157
+ D +DI VG ++ +H AD L V V++GE ++ + L +++ +
Sbjct: 129 INDPVIAVDIVVGEVMSVGKHPSADRLLVTNVNIGERAVTVVTNDLT-------VKEGNR 181
Query: 158 VVLANLKPRNMRGVKSHGMLLAASDAAHENV--ELLEPPQG 196
V +A L PRN G+ S GM L A + +NV E+ P+G
Sbjct: 182 VAVALLPPRNFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKG 222
>pdb|2NZH|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZH|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZO|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|C Chain C, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|D Chain D, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
Length = 113
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 98 VKDAANMLDIRVGRIIKAWRHEEAD----SLYVE---EVDVGEAEPRIICSGLVKYVPLE 150
V D LDIR G I+KA EA L ++ E+ + ++ +I +Y P E
Sbjct: 6 VIDDFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITK----RYKP-E 60
Query: 151 FLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQ 195
L ++ V+ + N PR + G KS ++L +V LL+P Q
Sbjct: 61 GLINKQVIAVVNFPPRRIAGFKSEVLVLGGI-PGQGDVVLLQPDQ 104
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 86 LPRPAVE-DNSVNV-KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEP-RIICS 141
+ R +E DN ++ KD N++ VG I +H +AD L + +VD+GE EP +I+C
Sbjct: 25 ITRTGIEVDNMIDYSKDIKNLV---VGYIQSKEKHPDADKLNICQVDIGEEEPVQIVCG 80
>pdb|1GD7|A Chain A, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|B Chain B, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|C Chain C, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|D Chain D, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities
Length = 109
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 100 DAANMLDIRVGRIIKAWRHEEADS-LYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVV 158
+A +LD+RVGR+++A HE+A Y VD+G + + + + E L R VV
Sbjct: 5 EAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVV 64
Query: 159 VLANLKPRNMRGVKSHGMLLAASDAAHENVELLEP 193
NL + + G S ++L D A V LL P
Sbjct: 65 CAVNLGAKRVAGFLSEVLVLGVPDEAG-RVVLLAP 98
>pdb|2Q2H|A Chain A, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens With A Genetically Fused
Phage-Display Derived Peptide Substrate At The
N-Terminus.
pdb|2Q2H|B Chain B, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens With A Genetically Fused
Phage-Display Derived Peptide Substrate At The
N-Terminus
Length = 131
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVE-------EVDVGEAEPRIICSGLVKYVPLEFLQDRSV 157
+DIRVG I++A EA ++ E+ + ++ +I V Y P E L R V
Sbjct: 31 VDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQI----TVHYTP-ESLVGRQV 85
Query: 158 VVLANLKPRNMRGVKSHGMLLAASDA 183
+ + N PR + +S + L +DA
Sbjct: 86 LGVVNFPPRQIGPFRSEVLTLGFADA 111
>pdb|2Q2I|A Chain A, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens.
pdb|2Q2I|B Chain B, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens
Length = 116
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVE-------EVDVGEAEPRIICSGLVKYVPLEFLQDRSV 157
+DIRVG I++A EA ++ E+ + ++ +I V Y P E L R V
Sbjct: 16 VDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQI----TVHYTP-ESLVGRQV 70
Query: 158 VVLANLKPRNMRGVKSHGMLLAASDA 183
+ + N PR + +S + L +DA
Sbjct: 71 LGVVNFPPRQIGPFRSEVLTLGFADA 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,834,339
Number of Sequences: 62578
Number of extensions: 249718
Number of successful extensions: 594
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 15
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)