BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024343
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4
Length = 528
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 109/170 (64%), Gaps = 14/170 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG++I +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
P+ MRGVKS GMLL AS + + VE L+PP GS PGER++ E D+E +P
Sbjct: 428 PQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKP---- 483
Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
KKK++E +Q K +A + T G+V +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVSCKSLKGGNIS 528
>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2
SV=3
Length = 528
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 109/170 (64%), Gaps = 14/170 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG+II +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
P+ MRGV+S GMLL AS + + VE L+PP GS PGER++ E D+E +P
Sbjct: 428 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKP---- 483
Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
KKK++E +Q K +A + T G++ +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528
>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars
PE=2 SV=3
Length = 528
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 106/170 (62%), Gaps = 14/170 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG+I+ +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
P+ MRGV S GMLL AS + VE L+PP GS PGER++ E D+E +P
Sbjct: 428 PQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKP---- 483
Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
KKK++E +Q K VA + T G V +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISDDCVAQWKQTNFMTKLGFVSCKSLKGGNIS 528
>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Mus musculus GN=Aimp1 PE=1 SV=2
Length = 310
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 109/171 (63%), Gaps = 15/171 (8%)
Query: 102 ANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLA 161
A+ LD+R+G I+ A +H +ADSLYVEEVDVGEA PR + SGLV +VPLE +Q+R VV+L
Sbjct: 150 ASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLC 209
Query: 162 NLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPA 218
NLKP MRGV S M++ AS + E VE+L PP GSVPG+RI F + + DKE P
Sbjct: 210 NLKPAKMRGVLSQAMVMCAS--SPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNP--- 264
Query: 219 SPNQVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
KKKIWE +QP L T+A VA G G ++++ N+ I
Sbjct: 265 ------KKKIWEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGI 309
>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1
SV=4
Length = 528
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 108/170 (63%), Gaps = 14/170 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG+II +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
P+ MRGV+S GMLL AS + + VE L+PP GS PGE ++ E D+E +P
Sbjct: 428 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKP---- 483
Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
KKK++E +Q K +A + T G++ +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528
>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2
SV=3
Length = 528
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 106/170 (62%), Gaps = 14/170 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG+I+ +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427
Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
P+ MRGV S GMLL AS + VE L+PP GS PGER++ E D+E +P
Sbjct: 428 PQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKP---- 483
Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
KKK++E +Q K +A + T G V +SLK NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGFVSCKSLKGGNIS 528
>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1
Length = 359
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 15/168 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LD+R+GRI+ +H +ADSLYVEEVDVGEA PR + SGLV +VPL+ +Q+R VV+L NLK
Sbjct: 202 LDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLK 261
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
P MRG+ S M++ AS + E VE+L PP GSVPG+RI F + + DKE P
Sbjct: 262 PAKMRGILSQAMVMCAS--SPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 313
Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
KKKIWE +QP L T+A VA G G ++++ N+ I
Sbjct: 314 ---KKKIWEQIQPDLHTNAECVATYKGSPFEVKGKGVCRAQTMANSGI 358
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os06g0508700 PE=2 SV=2
Length = 801
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 104/164 (63%), Gaps = 6/164 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG I KA +H +ADSLYVEE+DVGE PR + SGLVK++PLE +Q+R V VL NLK
Sbjct: 643 LDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLK 702
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQ 224
P MRG+KSH M+LAAS+ H VEL+EPP+ + GER+ F +P AS N
Sbjct: 703 PVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGY---SGEPE-ASLN--A 756
Query: 225 KKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANI 268
K K WE + L ++ LVA + TSAG +S+ + I
Sbjct: 757 KSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEI 800
>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2
SV=1
Length = 528
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 125/215 (58%), Gaps = 7/215 (3%)
Query: 56 LLRPHHPKTSSFCTSPITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKA 115
LL P K +S ++N + +S+P+ + +++ D + +LD+RVG+I+
Sbjct: 320 LLHPIREKFNSPEMKKLSNDAYPDASKQKSVPKGSTKNSGTEEIDPS-LLDLRVGKILSV 378
Query: 116 WRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHG 175
+H +ADSLYVE VDVGEA PR + SGLV+YVP + L RSVV+L NLKP+ MRG++S G
Sbjct: 379 SQHPDADSLYVESVDVGEANPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQG 438
Query: 176 MLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQP 234
MLL AS + + VE L+PP GS PGERI+ E+ E + P KKK++E +Q
Sbjct: 439 MLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPE-GELKP----KKKVFEKLQV 493
Query: 235 HLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
+ L A T G+V ++L+ +I
Sbjct: 494 DFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSIG 528
>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2
Length = 312
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LD+R+G II A +H +ADSLYVEEVDVGE PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 155 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 214
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
P MRGV S M++ AS + E +E+L PP GSVPG+RI F + + DKE P
Sbjct: 215 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 266
Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
KKKIWE +QP L T+ VA G G ++++ N+ I
Sbjct: 267 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 311
>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars
PE=2 SV=1
Length = 528
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 125/215 (58%), Gaps = 7/215 (3%)
Query: 56 LLRPHHPKTSSFCTSPITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKA 115
LL P K +S ++N + +++P+ + +++ D + +LD+RVG+I+
Sbjct: 320 LLDPIREKFNSPEMKKLSNDAYPGASKQKTVPKGSTKNSGPEEIDPS-LLDLRVGKILSV 378
Query: 116 WRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHG 175
+H +ADSLYVE VDVGE PR + SGLV+YVP + L RSVV+L NLKP+ MRG++S G
Sbjct: 379 RQHPDADSLYVESVDVGEENPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQG 438
Query: 176 MLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQP 234
MLL AS + + VE L+PP GS PGERI+ E+ E + P KKK++E +Q
Sbjct: 439 MLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPE-GELKP----KKKVFEKLQV 493
Query: 235 HLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
+ L A T G+V ++L+ +IS
Sbjct: 494 DFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSIS 528
>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2
Length = 529
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 18/188 (9%)
Query: 87 PRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKY 146
P+ +D+ V + LDIRVG++I +H +ADSLY+E++DVGE +PR + SGLV Y
Sbjct: 355 PKQTTDDDEV----IPSRLDIRVGKVISVEKHPDADSLYLEKIDVGEEQPRTVVSGLVAY 410
Query: 147 VPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWF 205
+ E LQDR VV+L NLKP+ MRG++S M+L AS + VE L+PP+GS G+R++
Sbjct: 411 ITEEQLQDRLVVLLCNLKPQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYV 470
Query: 206 GSQE----DKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSR 261
E D E +P KKK++E +Q LK VA E + T G + +
Sbjct: 471 EGYESGKPDDELKP---------KKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRITCK 521
Query: 262 SLKNANIS 269
+LK NIS
Sbjct: 522 TLKGGNIS 529
>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2
SV=1
Length = 527
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 10/168 (5%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG+++ +H +ADSLYVE++DVGE EPR + SGLV++VP E LQDR VV+L NLK
Sbjct: 367 LDIRVGKVVSVEKHPDADSLYVEKIDVGEPEPRTVVSGLVQFVPKEQLQDRLVVLLCNLK 426
Query: 165 PRNMRGVKSHGMLLAASDAAH-ENVELLEPPQGSVPGERIWFGSQEDKE--NQPAPASPN 221
P+ MRGV+S GM+L AS VE L+PP GER++ ED E ++ P
Sbjct: 427 PQKMRGVESQGMVLCASSVGEPRQVEPLDPPAECCAGERVYVEGYEDGEPDDELKP---- 482
Query: 222 QVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
KKK++E +Q + +A E T G++ +SLK +IS
Sbjct: 483 ---KKKVFEKLQADFRISEDCIAQWKERNFLTKLGSISCKSLKGGSIS 527
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana
GN=At4g13780 PE=2 SV=1
Length = 797
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 101/166 (60%), Gaps = 10/166 (6%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG+I+KA +H +AD+LYVEE+DVG E R + SGLVKY+PLE +Q+R V VL NLK
Sbjct: 639 LDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLK 698
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQ 224
P MR + S M+LAAS + VEL+EPP+ + GER+ F E P+ V
Sbjct: 699 PAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFE--------GEPDDVL 750
Query: 225 --KKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANI 268
KKK+WE + L T +LVA + TSAG S+ N I
Sbjct: 751 NPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTI 796
>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ARC1 PE=1 SV=2
Length = 376
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 96/146 (65%), Gaps = 10/146 (6%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAE-PRIICSGLVKYVPLEFLQDRSVVVLANL 163
+D RVG I KA +H +ADSLYV +DVG+ E PR +CSGLVK+ PL+ +Q+R VVV+ NL
Sbjct: 209 IDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKHFPLDAMQERYVVVVCNL 268
Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 223
KP NMRG+KS M+L S+ + VE +EPP+ S G++++F D+ AP Q+
Sbjct: 269 KPVNMRGIKSTAMVLCGSN--DDKVEFVEPPKDSKAGDKVFFEGFGDE----APM--KQL 320
Query: 224 Q-KKKIWELVQPHLKTDASLVAMLGE 248
KKKIWE +QPH T+ L + +
Sbjct: 321 NPKKKIWEHLQPHFTTNDGLEVIFKD 346
>sp|Q9P6K7|YLF4_SCHPO Uncharacterized tRNA-binding protein C30C2.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC30C2.04 PE=4 SV=1
Length = 450
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 88/143 (61%), Gaps = 6/143 (4%)
Query: 103 NMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAE-PRIICSGLVKYVPLEFLQDRSVVVLA 161
+M+D R+G I KA +H ADSLYV + G+AE PR +CSGLVKY+PLE +Q R V+V+A
Sbjct: 280 SMIDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVVA 339
Query: 162 NLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPN 221
NLKP NMR VKS M+ AS VE + PP+ + G+R+ F D E A +P
Sbjct: 340 NLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGF-DTEEPEAQLNP- 397
Query: 222 QVQKKKIWELVQPHLKTDASLVA 244
K+KIWE +QP + L+
Sbjct: 398 ---KRKIWEAIQPGFTSGEDLIC 417
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=mrs-1 PE=2 SV=1
Length = 917
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 93 DNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFL 152
D++++V LD+RVGRIIK +H +AD+LYVE++DVGE+ PR + SGLV++VPL+ +
Sbjct: 752 DDTIDV----GRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQM 807
Query: 153 QDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW---FGSQE 209
Q+R VVVL NLKP MRGV+S M++ AS + + VE++E P S PG + + +
Sbjct: 808 QNRLVVVLCNLKPAKMRGVESRAMVMCAS--SPDKVEIMEVPADSKPGTPVVCPPYTHRP 865
Query: 210 DKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
D++ P KKKIWE V LK A A G+ L+ S + + +L+ ++
Sbjct: 866 DEQLNP---------KKKIWETVAEDLKVSAEGFAEWKGQPLLIGSESKMTAPTLRGVHV 916
>sp|B6YUN0|SYM_THEON Methionine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=metG PE=3 SV=1
Length = 733
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LD+RVG+I+ H AD LYV +VD+G E R + +GL KY + L +R VV++ANL+
Sbjct: 637 LDLRVGKIVDVQDHPNADKLYVVKVDLGN-EVRQLVAGLKKYYSKDDLLNRYVVIIANLE 695
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
P+ +RG++S GMLLAA D ENV LL P + G RI
Sbjct: 696 PKKLRGIESQGMLLAADDG--ENVALLMPDKEVKLGARI 732
>sp|O58721|SYM_PYRHO Methionine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=metG PE=3 SV=1
Length = 723
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 96 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDR 155
V +D A LD+RVG+II+ H AD LY+ +VD+G+ E R + +GL KY E L ++
Sbjct: 619 VKFEDFAK-LDLRVGKIIEVKDHPNADKLYIVKVDLGK-EVRTLVAGLKKYYKPEELLNK 676
Query: 156 SVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
V+++ANL+P+ +RGV+S GMLLAA D ENV LL P + G ++
Sbjct: 677 YVIIVANLEPKKLRGVESQGMLLAADDG--ENVALLMPDKEVKLGAKV 722
>sp|Q9V011|SYM_PYRAB Methionine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=metG PE=1 SV=1
Length = 722
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 96 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDR 155
V D A LD+RVG+II+ H AD LYV +VD+G+ E R + +GL KY E L +R
Sbjct: 618 VKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNR 675
Query: 156 SVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
VVV+ANL+P+ +RG+ S GMLLAA D E V LL P + G ++
Sbjct: 676 YVVVVANLEPKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 721
>sp|Q73NT9|SYM_TREDE Methionine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=metG PE=3 SV=1
Length = 793
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPR 166
++ +II RH +AD LY+E++D G E R I SGLV ++ + + ++V++ NLKPR
Sbjct: 628 LKTAKIISVERHPDADKLYIEKLDDGSGEERTILSGLVPFLKEDEILGKTVIIADNLKPR 687
Query: 167 NMRGVKSHGMLLAAS---DAAHENVELLEPPQGSVPG 200
MRG++S GMLLAAS + E+VELL+ P + PG
Sbjct: 688 KMRGIESKGMLLAASWYDEEEKEHVELLQAPW-AAPG 723
>sp|Q8U221|SYM_PYRFU Methionine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=metG PE=3 SV=1
Length = 724
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
+D+R+G+I++ H AD LYV +VD+G E R + +GL KY E L +R VV++ANL+
Sbjct: 628 IDLRIGKIVEVQDHPNADKLYVVKVDLG-GEIRTLVAGLKKYYKPEELLNRYVVIVANLE 686
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
P+ +RGV+S GMLLAA D E V LL P + G ++
Sbjct: 687 PKKLRGVESQGMLLAADDG--EKVALLMPDKEVKLGAKV 723
>sp|Q5JDZ7|SYM_PYRKO Methionine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=metG PE=3 SV=1
Length = 741
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVV 159
D LD+RVG+II+ H AD LYV +VD+G+ E R + +GL KY E L VV+
Sbjct: 640 DEFAKLDLRVGKIIEVNDHPNADRLYVVKVDLGD-EVRQLVAGLKKYYKPEELLGHYVVI 698
Query: 160 LANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
+ANL+P+ +RGV+S GMLLAA D E V LL P + G RI
Sbjct: 699 IANLEPKKLRGVESQGMLLAADDG--ERVALLMPDKEVKLGARI 740
>sp|O83776|SYM_TREPA Methionine--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=metG PE=3 SV=1
Length = 811
Score = 78.2 bits (191), Expect = 5e-14, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 68/104 (65%), Gaps = 4/104 (3%)
Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPR 166
++V R+++ RH AD L+VE +D G R+I SGLV Y+ + L+ V+++ NL+PR
Sbjct: 654 LKVARVLQVERHPNADMLFVETLDDGSGVERVIVSGLVPYMAADALRGAHVLIVDNLQPR 713
Query: 167 NMRGVKSHGMLLAAS--DA-AHENVELLEPPQGSVPGERIWFGS 207
++RGV+S GMLLAA DA + +EL++ P ++PGER S
Sbjct: 714 SLRGVRSCGMLLAAEYVDAQGTKAIELVQAPW-ALPGERATLAS 756
>sp|Q46F18|SYM_METBF Methionine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=metG PE=3 SV=1
Length = 710
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 9/120 (7%)
Query: 84 ESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGL 143
E+LP ED + LDIRVG+++ A +++ L EVD+GE + R + +GL
Sbjct: 599 ETLPMIEYEDFA--------KLDIRVGKVLLAEPVKKSKKLIRIEVDIGEEKTRQLVAGL 650
Query: 144 VKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
Y E L +SV+VLANLKP + GVKS+GM+LAA D E V L P + PG RI
Sbjct: 651 SSYYAPEELVGKSVIVLANLKPAKLCGVKSNGMMLAADDGG-EIVSALMPDKEIKPGSRI 709
>sp|Q1D8K2|SYM_MYXXD Methionine--tRNA ligase OS=Myxococcus xanthus (strain DK 1622)
GN=metG PE=3 SV=1
Length = 703
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQ 153
+ D A ++ ++ G+++ A + ++AD L VDVGE PR I SG+ + E L
Sbjct: 596 GEIEYDDFAKVV-LKAGKVLAAEKVQKADKLLKLTVDVGEGSPRTIVSGIAEAFAPEALT 654
Query: 154 DRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSV-PGERI 203
R+VVV+ANLKPR ++G++S GMLL A E + LL+P G V PG +
Sbjct: 655 GRNVVVVANLKPRKLKGIESRGMLLTAGPGGKE-LSLLDP--GDVAPGSEV 702
>sp|Q8TIU5|SYM_METAC Methionine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=metG PE=3 SV=1
Length = 712
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 9/120 (7%)
Query: 84 ESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGL 143
E+LP+ ED + LDIRVG+++ +++ L EVD+GE +PR + +G+
Sbjct: 601 ETLPQIEYEDFA--------KLDIRVGKVLFVEPVKKSRKLLRVEVDIGEEKPRQLVAGM 652
Query: 144 VKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
Y E L + VVVLANLKP + GV+S+GM+LAA D V L P + PG RI
Sbjct: 653 ASYYTSEELVGKYVVVLANLKPAKLCGVESNGMMLAADDGG-AIVAALMPDKEIKPGSRI 711
>sp|Q8PYJ4|SYM_METMA Methionine--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=metG PE=3 SV=2
Length = 715
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Query: 75 ANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEA 134
A AE E+LP ED + LDIRVG+++ +++ L EVD+GE
Sbjct: 595 ATAEEKVQVETLPVIDYEDFA--------KLDIRVGKVLLVEPVKKSKKLLRIEVDIGEE 646
Query: 135 EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAA 184
+PR + +G+ Y E L +SV+VLANLKP + GV+S+GM+LAA D
Sbjct: 647 KPRQLVAGMASYYTPEELVGKSVIVLANLKPAKLCGVESNGMMLAADDGG 696
>sp|Q5WST1|SYM_LEGPL Methionine--tRNA ligase OS=Legionella pneumophila (strain Lens)
GN=metG PE=3 SV=1
Length = 670
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 8/126 (6%)
Query: 79 TTTTSESLPRPAVED-NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPR 137
TT T E+ P VED N ++++D A +D+R+ +I+ A E AD L +D+G+A+ +
Sbjct: 551 TTQTKENTP---VEDSNLISIEDFAK-VDLRIAKIVNAEPVEGADKLMRLILDLGDAQKQ 606
Query: 138 IICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGS 197
+ +G+ K E L R V++ANL+PR MR S GM+LAA D + + LL+P G+
Sbjct: 607 VF-AGIKKAYDAEELIGRLTVMVANLEPRTMRFGVSEGMVLAAGDG--QGIYLLQPDAGA 663
Query: 198 VPGERI 203
+PG ++
Sbjct: 664 LPGMKV 669
>sp|Q8EDX2|SYM_SHEON Methionine--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=metG PE=3 SV=1
Length = 676
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 76 NAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVG 132
N + TT E+ P D +++N +D A +D+R+ RI+KA EAD L ++D+G
Sbjct: 548 NLQATTEPEAPKGPLATDPISDTINYEDFAK-IDLRIARIVKAEHVAEADKLLKLQLDIG 606
Query: 133 EAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLE 192
E R + +G+ E L+ + V++ANL PR MR S GM+LAA ++ +LE
Sbjct: 607 -GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SDLWILE 664
Query: 193 PPQGSVPGERI 203
P +G+ PG R+
Sbjct: 665 PHEGAQPGMRV 675
>sp|A6WP56|SYM_SHEB8 Methionine--tRNA ligase OS=Shewanella baltica (strain OS185)
GN=metG PE=3 SV=1
Length = 689
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Query: 70 SPITNANAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 126
+P T A +T S P V+D ++N D A +D+R+ RIIKA +AD L
Sbjct: 555 APKTAAPEKTAEASSVSSEPLVDDPISETINFDDFAK-IDLRIARIIKAEHVADADKLLK 613
Query: 127 EEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHE 186
++D+G E R + +G+ E L+ + V++ANL PR MR S GM+LAA
Sbjct: 614 LQLDIG-GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-S 671
Query: 187 NVELLEPPQGSVPGERI 203
++ +LEP +G+ PG R+
Sbjct: 672 DLWILEPHEGAQPGMRV 688
>sp|Q9RUF3|SYM_DEIRA Methionine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=metG PE=3 SV=1
Length = 681
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 58 RPHHPKTSSFCTSPITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWR 117
+P P+ + A A+TT PA D +++ D A +D+R+ ++
Sbjct: 538 KPPKPQAKKEKKTVTDTAPAKTTEQKPEAAAPAQNDGLISIDDFAK-IDLRIAEVVACEA 596
Query: 118 HEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGML 177
E+AD L V +G+ E R + SG+ K+ E L R VV++ANLKP +RG++S GM+
Sbjct: 597 VEKADKLLKLTVKLGD-ETRTVVSGIRKWYEPEALVGRKVVLVANLKPAKLRGIESQGMI 655
Query: 178 LAASDAAHENVEL----LEPPQGS 197
LAA D A N++L L+ P G+
Sbjct: 656 LAAEDDAG-NLDLVGTELDLPSGT 678
>sp|B8E958|SYM_SHEB2 Methionine--tRNA ligase OS=Shewanella baltica (strain OS223)
GN=metG PE=3 SV=1
Length = 689
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Query: 70 SPITNANAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 126
+P T A +T S P V+D ++N D A +D+R+ RI+KA +AD L
Sbjct: 555 APKTAAPEKTAKASSVSSEPLVDDPISETINFDDFAK-IDLRIARIVKAEHVADADKLLK 613
Query: 127 EEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHE 186
++D+G E R + +G+ E L+ + V++ANL PR MR S GM+LAA
Sbjct: 614 LQLDIG-GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-S 671
Query: 187 NVELLEPPQGSVPGERI 203
++ +LEP +G+ PG R+
Sbjct: 672 DLWILEPHEGAQPGMRV 688
>sp|A1RIY0|SYM_SHESW Methionine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=metG
PE=3 SV=1
Length = 689
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 71 PITNANAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVE 127
P T +T +S P V+D ++N D A +D+R+ RI+KA EAD L
Sbjct: 556 PKTAKPEKTVESSNVSSEPLVDDPISETINFDDFAK-IDLRIARIVKAEHVAEADKLLKL 614
Query: 128 EVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHEN 187
++D+G E R + +G+ E L+ + V++ANL PR MR S GM+LAA +
Sbjct: 615 QLDIG-GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SD 672
Query: 188 VELLEPPQGSVPGERI 203
+ +LEP +G+ PG R+
Sbjct: 673 LWILEPHEGAQPGMRV 688
>sp|A4Y7K8|SYM_SHEPC Methionine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=metG PE=3 SV=1
Length = 689
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 71 PITNANAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVE 127
P T +T +S P V+D ++N D A +D+R+ RI+KA EAD L
Sbjct: 556 PKTAKPEKTVESSNVSSEPLVDDPISETINFDDFAK-IDLRIARIVKAEHVAEADKLLKL 614
Query: 128 EVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHEN 187
++D+G E R + +G+ E L+ + V++ANL PR MR S GM+LAA +
Sbjct: 615 QLDIG-GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SD 672
Query: 188 VELLEPPQGSVPGERI 203
+ +LEP +G+ PG R+
Sbjct: 673 LWILEPHEGAQPGMRV 688
>sp|P42589|YGJH_ECOLI tRNA-binding protein YgjH OS=Escherichia coli (strain K12) GN=ygjH
PE=1 SV=1
Length = 110
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
L++RVG+I++ RHE AD LY+ +VDVG+ + + S LV Y E L ++VVVL NL+
Sbjct: 12 LEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVLCNLQ 70
Query: 165 PRNMRGVKSHGMLLAA-SDAAHENVELLEPPQGSVPGERI 203
MRG S MLL A +D E+V LL P + G R+
Sbjct: 71 KAKMRGETSECMLLCAETDDGSESV-LLTPERMMPAGVRV 109
>sp|Q0HVY2|SYM_SHESR Methionine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=metG
PE=3 SV=1
Length = 676
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 76 NAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVG 132
N + T+ E+ P D +++N +D A +D+R+ RI+KA EAD L ++D+G
Sbjct: 548 NLQATSEPEAPKGPLASDPISDTINYEDFAK-IDLRIARIVKAEHVAEADKLLKLQLDIG 606
Query: 133 EAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLE 192
E R + +G+ E L+ + V++ANL PR MR S GM+LAA ++ +LE
Sbjct: 607 -GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SDLWILE 664
Query: 193 PPQGSVPGERI 203
P +G+ PG R+
Sbjct: 665 PHEGAQPGMRV 675
>sp|A0KW24|SYM_SHESA Methionine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=metG
PE=3 SV=1
Length = 676
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 76 NAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVG 132
N + T+ E+ P D +++N +D A +D+R+ RI+KA EAD L ++D+G
Sbjct: 548 NLQATSEPEAPKGPLATDPISDTINFEDFAK-IDLRIARIVKAEHVAEADKLLKLQLDIG 606
Query: 133 EAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLE 192
E R + +G+ E L+ + V++ANL PR MR S GM+LAA ++ +LE
Sbjct: 607 -GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SDLWILE 664
Query: 193 PPQGSVPGERI 203
P +G+ PG R+
Sbjct: 665 PHEGAQPGMRV 675
>sp|Q74MZ1|SYM_NANEQ Methionine--tRNA ligase OS=Nanoarchaeum equitans (strain Kin4-M)
GN=metG PE=3 SV=1
Length = 776
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LD+RVG+II H AD LY+ +V +G + + + GL +Y E L + VV++ NLK
Sbjct: 680 LDMRVGKIIDVQDHPNADKLYIIKVSLGNKQ-KTLVGGLKQYYKKEELIGKYVVLINNLK 738
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQ 195
P+ +RG+ S GMLLAA D + V LL P +
Sbjct: 739 PKQLRGITSEGMLLAADDG--KEVALLMPDK 767
>sp|Q0HJN6|SYM_SHESM Methionine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=metG
PE=3 SV=1
Length = 676
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 76 NAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVG 132
N + T+ E+ P D +++N D A +D+R+ RI+KA EAD L ++D+G
Sbjct: 548 NLQATSEPEAPKGPLATDPISDTINFDDFAK-IDLRIARIVKAEHVAEADKLLKLQLDIG 606
Query: 133 EAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLE 192
E R + +G+ E L+ + V++ANL PR MR S GM+LAA ++ +LE
Sbjct: 607 -GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-SDLWILE 664
Query: 193 PPQGSVPGERI 203
P +G+ PG R+
Sbjct: 665 PHEGAQPGMRV 675
>sp|Q5X105|SYM_LEGPA Methionine--tRNA ligase OS=Legionella pneumophila (strain Paris)
GN=metG PE=3 SV=1
Length = 670
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 79 TTTTSESLPRPAVED-NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPR 137
TT E+ P VED N ++++D A +D+R+ +I+ A E AD L +D+G+A+ +
Sbjct: 551 TTPVKENTP---VEDANLISIEDFAK-VDLRIAKIVNAEPVEGADKLMRLILDLGDAQKQ 606
Query: 138 IICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGS 197
+ +G+ K E L R V++ANL+PR MR S GM+LAA D + + LL+P G+
Sbjct: 607 VF-AGIKKAYDAEELIGRLTVMVANLEPRTMRFGVSEGMVLAAGDG--QGIYLLQPDAGA 663
Query: 198 VPGERI 203
+PG ++
Sbjct: 664 LPGMKV 669
>sp|Q5ZRJ9|SYM_LEGPH Methionine--tRNA ligase OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=metG PE=3 SV=2
Length = 670
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 79 TTTTSESLPRPAVED-NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPR 137
TT E+ P VED N ++++D A +D+R+ +I+ A E AD L +D+G+A+ +
Sbjct: 551 TTPVKENTP---VEDANLISIEDFAK-VDLRIAKIVNAEPVEGADKLMRLILDLGDAQKQ 606
Query: 138 IICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGS 197
+ +G+ K E L R V++ANL+PR MR S GM+LAA D + + LL+P G+
Sbjct: 607 VF-AGIKKAYDAEELIGRLTVMVANLEPRTMRFGVSEGMVLAAGDG--QGIYLLQPDAGA 663
Query: 198 VPGERI 203
+PG ++
Sbjct: 664 LPGMKV 669
>sp|B1XWM2|SYM_LEPCP Methionine--tRNA ligase OS=Leptothrix cholodnii (strain ATCC 51168
/ LMG 8142 / SP-6) GN=metG PE=3 SV=1
Length = 689
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 89 PAVEDNSVNVK-DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYV 147
P ED + ++ D + +D+R+ +I+KA E +D L +DVGE R + SG+
Sbjct: 570 PGGEDIAAEIRIDDFSKVDLRIAKIVKAEAVEGSDKLLRLTLDVGEGRTRNVFSGIKGAY 629
Query: 148 PLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDA---AHENVELLEPPQGSVPGERI 203
E L+ + +V++ANL PR M+ S GM+LAAS A A + +LEP G+ PG R+
Sbjct: 630 KPEDLEGKFIVMVANLAPRKMKFGISEGMVLAASHADEKAQPGLFVLEPHAGATPGMRV 688
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
+D+RV + +A E +D L +DVGEAEPR + SG+ ++ E L+ + VV++ANL
Sbjct: 588 VDLRVALVQEAATVEGSDKLLQLTLDVGEAEPRNVFSGIREFYQPEDLKGKLVVMVANLA 647
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
PR MR S+GM+LAA + + V ++ P G+ PG+++
Sbjct: 648 PRKMRFGISNGMVLAAGNG--DGVWVISPDSGAKPGDKV 684
>sp|A5II55|SYM_LEGPC Methionine--tRNA ligase OS=Legionella pneumophila (strain Corby)
GN=metG PE=3 SV=1
Length = 670
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 75/126 (59%), Gaps = 8/126 (6%)
Query: 79 TTTTSESLPRPAVED-NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPR 137
TT E+ P VED N ++++D A +D+R+ +I+ A E AD L +D+G+A+ +
Sbjct: 551 TTPIKENTP---VEDSNLISIEDFAK-VDLRIAKIVNAEPVEGADKLMRLILDLGDAQKQ 606
Query: 138 IICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGS 197
+ +G+ K E L R V++ANL+PR MR S GM+LAA D + + LL+P G+
Sbjct: 607 VF-AGIKKAYDAEELIGRLTVMVANLEPRTMRFGVSEGMVLAAGDG--QGIYLLQPDAGA 663
Query: 198 VPGERI 203
PG ++
Sbjct: 664 FPGMKV 669
>sp|A3D5E5|SYM_SHEB5 Methionine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=metG PE=3 SV=1
Length = 689
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 70 SPITNANAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 126
+P T A + S P V D ++N D A +D+R+ RI+KA +AD L
Sbjct: 555 APKTAAPEKIAKASSVSSEPLVSDPISETINFDDFAK-IDLRIARIVKAEHVADADKLLK 613
Query: 127 EEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHE 186
++D+G E R + +G+ E L+ + V++ANL PR MR S GM+LAA
Sbjct: 614 LQLDIG-GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-S 671
Query: 187 NVELLEPPQGSVPGERI 203
++ +LEP +G+ PG R+
Sbjct: 672 DLWILEPHEGAQPGMRV 688
>sp|A9L4F6|SYM_SHEB9 Methionine--tRNA ligase OS=Shewanella baltica (strain OS195)
GN=metG PE=3 SV=1
Length = 689
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 70 SPITNANAETTTTSESLPRPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 126
+P T A + S P V D ++N D A +D+R+ RI+KA +AD L
Sbjct: 555 APKTAAPEKIAKASSVSSEPLVSDPISETINFDDFAK-IDLRIARIVKAEHVADADKLLK 613
Query: 127 EEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHE 186
++D+G E R + +G+ E L+ + V++ANL PR MR S GM+LAA
Sbjct: 614 LQLDIG-GETRQVFAGIKSAYSPEDLEGKLTVMVANLAPRKMRFGMSEGMVLAAGPGG-S 671
Query: 187 NVELLEPPQGSVPGERI 203
++ +LEP +G+ PG R+
Sbjct: 672 DLWILEPHEGAQPGMRV 688
>sp|A2SRE2|SYM_METLZ Methionine--tRNA ligase OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=metG PE=3 SV=1
Length = 673
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 77 AETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEP 136
A T E++ P + + + + D A LD+RVGR++KA R + L +VD+G E
Sbjct: 553 AAGKNTMEAVIEP-ISEEIITIDDVAK-LDLRVGRVVKAERVPKTTKLLRLQVDIG-TEV 609
Query: 137 RIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQG 196
R I SG+ E + D+ ++V+ NLKP RG +S+GML AA + A V L + P+G
Sbjct: 610 RQIVSGIADVYTPEEMVDKKIIVVVNLKPAKFRGEESNGMLFAAGEEASLLVPLKDVPEG 669
Query: 197 S 197
+
Sbjct: 670 T 670
>sp|A1WBH1|SYM_ACISJ Methionine--tRNA ligase OS=Acidovorax sp. (strain JS42) GN=metG
PE=3 SV=1
Length = 688
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 87 PRPAVEDN---------SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPR 137
P PAVE ++ + D A +D+R+ +I+K E + L +DVGE + R
Sbjct: 560 PAPAVEKVIPGGEEIAPTITIDDFAK-VDLRIAKIVKCEAVEGSTKLLRLTLDVGEGQTR 618
Query: 138 IICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDA---AHENVELLEPP 194
+ SG+ + LQ + V++ANL PR M+ S GM+LAAS A AH + +LEP
Sbjct: 619 NVFSGIASMYKPKDLQGKLTVMVANLAPRKMKFGLSEGMVLAASHADEKAHPGIFVLEPF 678
Query: 195 QGSVPGERI 203
G+ PG RI
Sbjct: 679 PGAQPGMRI 687
>sp|Q8XWT9|SYM_RALSO Methionine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000)
GN=metG PE=3 SV=1
Length = 688
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 89 PAVE--DNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKY 146
PAVE ++ + D A +D+RV +I+ R E ++ L +DVGE + R + SG+
Sbjct: 569 PAVEPMAETIAIDDFAK-IDLRVAKIVACQRVEGSNKLLQLTLDVGEGKTRNVFSGIQSA 627
Query: 147 VPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDA---AHENVELLEPPQGSVPGERI 203
E L + V++ANL PR M+ S GM+LAAS A A + +LEP G+VPG R+
Sbjct: 628 YAPEDLVGKLTVMVANLAPRKMKFGMSEGMVLAASAADEKAQPGLYILEPHAGAVPGMRV 687
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,668,852
Number of Sequences: 539616
Number of extensions: 3720773
Number of successful extensions: 10201
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 9364
Number of HSP's gapped (non-prelim): 595
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)