Query 024343
Match_columns 269
No_of_seqs 223 out of 1328
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ntg_A Tyrrs, tyrosyl-tRNA syn 100.0 1.5E-50 5.2E-55 350.1 17.7 165 99-269 5-170 (172)
2 1fl0_A Endothelial-monocyte ac 100.0 2.3E-47 7.9E-52 330.0 14.0 161 100-269 2-163 (171)
3 3ers_X TRNA-binding protein YG 100.0 1.2E-36 4.1E-41 249.0 10.0 113 94-208 2-114 (118)
4 1gd7_A CSAA protein; oligonucl 100.0 6.7E-35 2.3E-39 235.5 8.5 107 95-203 1-108 (109)
5 3g48_A Chaperone CSAA; structu 100.0 7.9E-35 2.7E-39 236.3 7.6 108 94-203 3-111 (112)
6 2cwp_A Metrs related protein; 100.0 5.9E-34 2E-38 230.9 11.0 106 95-203 6-111 (112)
7 2q2i_A AGR_C_4014P, secretion 100.0 2.4E-34 8.1E-39 234.5 8.4 108 94-203 6-115 (116)
8 2nzh_A Protein CSAA; beta barr 100.0 9.6E-35 3.3E-39 235.9 5.9 109 94-204 3-113 (113)
9 1mkh_A Metrs;, C-terminal doma 100.0 4E-34 1.4E-38 230.1 8.8 105 95-203 2-106 (107)
10 1pyb_A Methionyl-tRNA syntheta 100.0 3.2E-34 1.1E-38 232.0 7.5 108 92-203 3-110 (111)
11 2q2h_A AGR_C_4014P, secretion 100.0 1.2E-33 4E-38 235.1 8.6 107 95-203 22-130 (131)
12 1pxf_A Hypothetical protein YG 100.0 4.8E-33 1.6E-37 225.2 6.3 109 94-204 2-110 (111)
13 1rqg_A Methionyl-tRNA syntheta 99.9 6.4E-27 2.2E-31 236.8 0.0 105 95-203 617-721 (722)
14 2e8g_A Hypothetical protein PH 99.9 1.1E-25 3.8E-30 203.5 7.8 110 99-234 131-240 (241)
15 3bu2_A Putative tRNA-binding p 99.9 3.8E-25 1.3E-29 195.2 10.2 91 105-203 91-196 (199)
16 3pco_B Phenylalanyl-tRNA synth 99.8 3.3E-21 1.1E-25 197.8 9.9 91 106-203 44-147 (795)
17 1b7y_B Phers, protein (phenyla 99.8 1.6E-19 5.3E-24 185.2 5.0 97 105-206 43-151 (785)
18 2rhq_B Phenylalanyl-tRNA synth 99.7 2E-18 6.8E-23 177.0 8.2 87 106-203 44-149 (795)
19 3kf6_A Protein STN1; OB fold, 26.4 1.1E+02 0.0036 25.5 5.4 31 108-141 52-82 (159)
20 2ot2_A Hydrogenase isoenzymes 24.8 1.4E+02 0.0047 22.8 5.4 45 108-160 5-51 (90)
No 1
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=100.00 E-value=1.5e-50 Score=350.07 Aligned_cols=165 Identities=50% Similarity=0.746 Sum_probs=150.6
Q ss_pred cccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEe
Q 024343 99 KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLL 178 (269)
Q Consensus 99 ~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLL 178 (269)
.||. ++|||||+|+++++||+|||||+|+||+|++++|||+||+.|+|++|+|+|++|++++||||+||||+.|+||||
T Consensus 5 ~df~-kl~irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~eel~G~~Vvvl~nlkp~klrGv~S~GMvL 83 (172)
T 1ntg_A 5 VIPS-RLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLL 83 (172)
T ss_dssp CCGG-GSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEEC
T ss_pred cCcc-EeCEEEEEEEEEEECCCCCccEEEEEEeCCCcEEEEEECCCCCCChHHHCCCEEEEEEeEcceeecceecCCEEe
Confidence 4675 599999999999999999999999999998779999999999999999999999999999999999999999976
Q ss_pred eeec-CCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeeeecccc
Q 024343 179 AASD-AAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGA 257 (269)
Q Consensus 179 sase-~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~ts~G~ 257 (269)
|+.+ +++++++|+.||+++++|++++|+|++. .+|+ +.+++|||+||++||+|+||++|+|+|+|.+|+|++|+
T Consensus 84 cs~~e~~~~~v~il~~~~~~~~G~~v~~~g~~~--~~p~---~~l~~kkk~~e~~~~~l~t~~~~~a~~k~~~~~~~~g~ 158 (172)
T 1ntg_A 84 CASIEGINRQVEPLDPPAGSAPGEHVFVKGYEK--GQPD---EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGS 158 (172)
T ss_dssp EEEEESSSEEEEECBCCBTCCTTCEEEETTCSS--CCCC---SSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEETTEE
T ss_pred EecccccCCCeEEEECCCCCCCCCEEEeCCcCC--CCCc---cccCcchhhHHhhCCCcEECCCCEEEECCEEEEeCCCC
Confidence 6654 3356899999999999999999999853 2343 45789999999999999999999999999999999999
Q ss_pred eEeccCCCcccC
Q 024343 258 VMSRSLKNANIS 269 (269)
Q Consensus 258 ~~~~sl~~~~Is 269 (269)
|++++|+|+.|+
T Consensus 159 ~~~~~l~~~~i~ 170 (172)
T 1ntg_A 159 ISCKSLKGGNIS 170 (172)
T ss_dssp CBCSSCTTCEEE
T ss_pred EEeeecCCCEEE
Confidence 999999999985
No 2
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=100.00 E-value=2.3e-47 Score=330.00 Aligned_cols=161 Identities=48% Similarity=0.782 Sum_probs=146.4
Q ss_pred ccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEee
Q 024343 100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLA 179 (269)
Q Consensus 100 df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLLs 179 (269)
||. ++|||||+|+++++||+|||||+++||+|++++|||+||+.|+|++++|.|+++++++||||+||||+.|||||||
T Consensus 2 df~-kldirVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~v~~a~lggk~v~~~~nlkp~klrGv~SeGMvLc 80 (171)
T 1fl0_A 2 DVS-RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMC 80 (171)
T ss_dssp CGG-GSCEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECE
T ss_pred Ccc-EEeEEEEEEEEEEECCCCCccEEEEEEcCCCcEEEEEECCCceEcchhcCCEEEcCceEEeeEEEccEeccCEEEE
Confidence 575 5999999999999999999999999999987799999999999999999999999899999999999999999877
Q ss_pred eecCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeee-ecccce
Q 024343 180 ASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQ-TSAGAV 258 (269)
Q Consensus 180 ase~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~-ts~G~~ 258 (269)
+.++ +++.|+.||+++++|+++.|+|++. +|+ +.+++|||+||++||+|+||++|+|+|+|.+|+ |++|+|
T Consensus 81 s~~~--~~~~il~~~~~~~~G~~v~~~g~~~---~p~---~~l~~kkk~~e~~~~~l~t~~~~va~~k~~~~~~~~~g~~ 152 (171)
T 1fl0_A 81 ASSP--EKIEILAPPNGSVPGDRITFDAFPG---EPD---KELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVC 152 (171)
T ss_dssp EEET--TEEEECBCCTTCCTTCBCCCTTSCC---CCC---SSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTTEEC
T ss_pred EecC--CCEEEEECCCCCCCCCEEEeCCCCC---CCc---cccCchhhhHHhhCCCcEECCCeEEEECCEEEEECCCccE
Confidence 7653 4688999999999999999999863 343 346799999999999999999999999999996 577999
Q ss_pred EeccCCCcccC
Q 024343 259 MSRSLKNANIS 269 (269)
Q Consensus 259 ~~~sl~~~~Is 269 (269)
++++|+|+.|+
T Consensus 153 ~~~~l~~~~~~ 163 (171)
T 1fl0_A 153 RAQTMSNSGIK 163 (171)
T ss_dssp BCSSCCSCEEC
T ss_pred EeeecCCCeEe
Confidence 99999999874
No 3
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=100.00 E-value=1.2e-36 Score=249.04 Aligned_cols=113 Identities=38% Similarity=0.552 Sum_probs=104.5
Q ss_pred CceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceec
Q 024343 94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKS 173 (269)
Q Consensus 94 ~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~S 173 (269)
++|+|+||.+ +|||||+|+++++||+|||||+|+||+|+ +.|+++||+.++|++|+|+|++|++++||||+||||+.|
T Consensus 2 e~I~~ddF~k-vdirVG~I~~~e~hp~AdKL~~~~VD~G~-~~~~iv~g~~~~y~pe~LvGk~v~~v~Nlkp~kirGv~S 79 (118)
T 3ers_X 2 ETVAYADFAR-LEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETS 79 (118)
T ss_dssp CCCCHHHHHT-SCEEEEEEEEEECCTTCSSCEEEEEECSS-SEEEEEECCTTTSCHHHHTTCEEEEECCSCCEEETTEEE
T ss_pred ceEcHHHcee-eeEEEEEEEEEEEcCCCCCcEEEEEEcCC-cEeeEEEEeehhcCHhHhcCCEEEeecccccceECCeec
Confidence 4799999975 99999999999999999999999999998 578899999999999999999999999999999999999
Q ss_pred ceEEeeeecCCCCcEEEEcCCCCCCCCceEEeCCC
Q 024343 174 HGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQ 208 (269)
Q Consensus 174 eGMLLsase~~~~~VelL~pp~~a~~G~rV~~~g~ 208 (269)
+|||||+.+++...+.|+.|+.++++|+||+|+.+
T Consensus 80 ~GMll~a~~~d~~~~~ll~p~~~~~~G~rv~~e~~ 114 (118)
T 3ers_X 80 ECMLLCAETDDGSESVLLTPERMMPAGVRVVLDHH 114 (118)
T ss_dssp CCEECEEECTTSSCEEECCCSSCCCTTCBCCCC--
T ss_pred eEEEEEEEcCCCCcEEEEcCCCCCCCCCEEEEeee
Confidence 99999999877667888999999999999999754
No 4
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=100.00 E-value=6.7e-35 Score=235.46 Aligned_cols=107 Identities=28% Similarity=0.373 Sum_probs=100.1
Q ss_pred ceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceec
Q 024343 95 SVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKS 173 (269)
Q Consensus 95 ~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~S 173 (269)
+|+|+||. ++|||||+|+++++||+|||| |+++||+|++++|||+||++|+|.+++|.|++|++++||||+||||+.|
T Consensus 1 ~i~~~df~-k~di~VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S 79 (109)
T 1gd7_A 1 MTPLEAFQ-ILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLS 79 (109)
T ss_dssp CCHHHHHH-HSCEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEE
T ss_pred CcChHHhh-ccCEEEEEEEEEEECCCCccccEEEEEEcCCCcEEEEEECCccccChhhcCCCEEEeeEecCceEeccEee
Confidence 47899997 599999999999999999999 9999999986789999999999999999999999999999999999999
Q ss_pred ceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343 174 HGMLLAASDAAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 174 eGMLLsase~~~~~VelL~pp~~a~~G~rV 203 (269)
||||||++++ ++++.+|.||+++++|+++
T Consensus 80 ~GMl~sa~~~-~~~i~~l~~~~~~~~G~~i 108 (109)
T 1gd7_A 80 EVLVLGVPDE-AGRVVLLAPDREVPLGGKV 108 (109)
T ss_dssp CSEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred cCEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence 9999999854 3579999999999999986
No 5
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=100.00 E-value=7.9e-35 Score=236.29 Aligned_cols=108 Identities=28% Similarity=0.373 Sum_probs=101.4
Q ss_pred CceeecccCCcCCeEEEEEEEEEeCCCCCc-eEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceeccee
Q 024343 94 NSVNVKDAANMLDIRVGRIIKAWRHEEADS-LYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVK 172 (269)
Q Consensus 94 ~~isi~df~~~ldIrVGkIveve~HP~ADK-Lyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~ 172 (269)
+.|+|+||. ++|||||+|+++++||+||| ||+++||+|+.++|||+||+.++|.+++|+|++|++++||||+||||+.
T Consensus 3 ~~i~~ddF~-kldirVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~~~~~~l~G~~v~~~~nlkp~kirGv~ 81 (112)
T 3g48_A 3 AMANFEDFL-TLDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPPKRVAGFK 81 (112)
T ss_dssp CCCCHHHHH-TCCEEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECCSCCEEETTEE
T ss_pred ceeCHHHhh-ceEEEEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeCCccccChhHcCCCEEEEEccccceeECCee
Confidence 569999997 59999999999999999999 9999999998678999999999999999999999999999999999999
Q ss_pred cceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343 173 SHGMLLAASDAAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 173 SeGMLLsase~~~~~VelL~pp~~a~~G~rV 203 (269)
|||||||+++++ ..++|+.||.++++|+||
T Consensus 82 S~GMl~s~~~~~-~~~~ll~p~~~~~~G~~i 111 (112)
T 3g48_A 82 SEVLVLGGVPEA-GDVVLLQPNMELPNGTKI 111 (112)
T ss_dssp ECSEECEEEEET-TEEEECCCSSCCCTTCBC
T ss_pred cCcEEeEeecCC-CCEEEEeCCCCCCCCCCc
Confidence 999999998753 358999999999999986
No 6
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.9e-34 Score=230.92 Aligned_cols=106 Identities=30% Similarity=0.488 Sum_probs=99.4
Q ss_pred ceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343 95 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH 174 (269)
Q Consensus 95 ~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se 174 (269)
+|+|+||. +++||||+|+++++||+|||||+|+||+|+ ++|||+||++|+|.+++|.|++|++++||||+||||+.||
T Consensus 6 ~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~VD~G~-~~rqIV~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~ 83 (112)
T 2cwp_A 6 LYDVDEFW-KFQMKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQ 83 (112)
T ss_dssp CCCHHHHH-TSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTSCGGGTTTCEEEEECSSCCEEETTEEEC
T ss_pred CcCHHHhh-cCCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEECCccccChhhcCCCEEECeEEEccceeCCEecc
Confidence 58999997 599999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343 175 GMLLAASDAAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 175 GMLLsase~~~~~VelL~pp~~a~~G~rV 203 (269)
|||||+++++ .++.|+.||+++++|+++
T Consensus 84 GMl~sa~~~~-~~~~il~~~~~~~~G~~i 111 (112)
T 2cwp_A 84 GMLILAETED-GKVYLIPVPEEVPVGARV 111 (112)
T ss_dssp SEECCEECTT-SCEECCBCCTTSCTTCEE
T ss_pred cEEEEeecCC-CcEEEEECCCCCCCCCCC
Confidence 9999998543 467899999999999987
No 7
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=2.4e-34 Score=234.50 Aligned_cols=108 Identities=24% Similarity=0.314 Sum_probs=100.7
Q ss_pred CceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEeeccceecce
Q 024343 94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGV 171 (269)
Q Consensus 94 ~~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv 171 (269)
++|+|+||. ++|||||+|+++++||+|||| |+|+||+|++ ++|||+||++|+|.+++|.|++|++++||||+||||+
T Consensus 6 ~~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv 84 (116)
T 2q2i_A 6 GEISYADFE-KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPF 84 (116)
T ss_dssp CCCCHHHHH-TSCEEEEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTE
T ss_pred ceeCHHHhh-cCCEEEEEEEEEEECCCCCCccEEEEEEeCCCCcEEEEEECCcCccChhhcCCCEEECceEEcceEECCE
Confidence 359999997 599999999999999999999 9999999974 6899999999999999999999999999999999999
Q ss_pred ecceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343 172 KSHGMLLAASDAAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 172 ~SeGMLLsase~~~~~VelL~pp~~a~~G~rV 203 (269)
.|||||||++++ ++++.+|.||+++++|+++
T Consensus 85 ~S~GMl~sa~~~-~~~i~ll~p~~~~~~G~~i 115 (116)
T 2q2i_A 85 RSEVLTLGFADA-NGDIVLAAVERPVPNGEKM 115 (116)
T ss_dssp EECCEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred EeCCEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence 999999999854 3579999999999999986
No 8
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=100.00 E-value=9.6e-35 Score=235.86 Aligned_cols=109 Identities=28% Similarity=0.362 Sum_probs=100.9
Q ss_pred CceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEeeccceecce
Q 024343 94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGV 171 (269)
Q Consensus 94 ~~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv 171 (269)
++|+|+||. ++|||||+|+++++||+|||| |+|+||+|++ ++|||+||++|+|.+++|.|++|++++||||+||||+
T Consensus 3 ~~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv 81 (113)
T 2nzh_A 3 HMAVIDDFE-KLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGF 81 (113)
T ss_dssp -CHHHHHHH-HCCEEEEEEEEEEEETTSSSCEEEEEEECHHHHCEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEETTE
T ss_pred cccCHHHhh-cCCEEEEEEEEEEECCCCCcccEEEEEEeCCCCcEEEEEECCCcccCHHHhCCCEEEeeEEEcceEECCE
Confidence 459999997 599999999999999999999 9999999985 6899999999999999999999999999999999999
Q ss_pred ecceEEeeeecCCCCcEEEEcCCCCCCCCceEE
Q 024343 172 KSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204 (269)
Q Consensus 172 ~SeGMLLsase~~~~~VelL~pp~~a~~G~rV~ 204 (269)
.|||||||++++ +++++++.||+++++|+++.
T Consensus 82 ~S~GMl~sa~~~-~~~i~ll~~~~~~~~G~~i~ 113 (113)
T 2nzh_A 82 KSEVLVLGGIPG-QGDVVLLQPDQPVPNGTKIG 113 (113)
T ss_dssp EECSEECEEEEE-TTEEEEEEESSCCCTTCEEC
T ss_pred EeCCEEEEeecC-CCCEEEEECCCCCCCCCCCC
Confidence 999999999874 35788999999999999973
No 9
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=100.00 E-value=4e-34 Score=230.08 Aligned_cols=105 Identities=48% Similarity=0.716 Sum_probs=98.4
Q ss_pred ceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343 95 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH 174 (269)
Q Consensus 95 ~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se 174 (269)
+|+|+||. ++|||||+|+++++||+|||||+++||+|+ ++|||+||++|+|.+++|.|++|++++||||+||||+.||
T Consensus 2 ~i~~~df~-k~dl~VG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~ 79 (107)
T 1mkh_A 2 YVKFDDFA-KLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ 79 (107)
T ss_dssp CCCHHHHH-TSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEEC
T ss_pred EecHHHhh-ccCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEeCCccccChhhcCCCEEECCeeEcceEEcCeeec
Confidence 58999997 599999999999999999999999999998 6899999999999999999999999999999999999999
Q ss_pred eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343 175 GMLLAASDAAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 175 GMLLsase~~~~~VelL~pp~~a~~G~rV 203 (269)
|||||++ +++++.+|.||+++++|+++
T Consensus 80 GMl~s~~--~~~gi~~l~p~~~~~~G~~i 106 (107)
T 1mkh_A 80 GMLLAAD--DGERVALLMPDKEVKLGAKV 106 (107)
T ss_dssp CCBCEEE--CSSCEEECCCSSCCCTTCEE
T ss_pred cEEEEcc--CCCcEEEEeCCCCCCCCCCC
Confidence 9999996 35689999999999999987
No 10
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=100.00 E-value=3.2e-34 Score=231.98 Aligned_cols=108 Identities=34% Similarity=0.620 Sum_probs=99.6
Q ss_pred CCCceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecce
Q 024343 92 EDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGV 171 (269)
Q Consensus 92 ~~~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv 171 (269)
.+++|+|+||. +++||||+|+++++||+|||||+++||+|+ ++|||+||+.|+|.+++|.|++|++++||||+||||+
T Consensus 3 ~~~~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv 80 (111)
T 1pyb_A 3 EKALIGIEDFL-KVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGI 80 (111)
T ss_dssp --CCCCHHHHH-HSCEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSC
T ss_pred cccccCHHHhc-cCCEEEEEEEEEEECCCCCccEEEEEEeCC-cEEEEEECCccccCccccCCCEEECcEeecceEEccE
Confidence 45679999997 599999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred ecceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343 172 KSHGMLLAASDAAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 172 ~SeGMLLsase~~~~~VelL~pp~~a~~G~rV 203 (269)
.|||||||++++ +.+.|+.||+++++|+++
T Consensus 81 ~S~GMl~sa~e~--~~~~il~~~~~~~~G~~v 110 (111)
T 1pyb_A 81 ESQGMILAASDG--ENLSVIVPDRDVKEGAKL 110 (111)
T ss_dssp CBSSEECEEECS--SCEEEEEESSCCCTTEEC
T ss_pred eeccEEEEeccC--CceEEEECCCCCCCCCCC
Confidence 999999999874 356788899999999986
No 11
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.2e-33 Score=235.10 Aligned_cols=107 Identities=24% Similarity=0.316 Sum_probs=100.3
Q ss_pred ceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEeeccceeccee
Q 024343 95 SVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVK 172 (269)
Q Consensus 95 ~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~ 172 (269)
+|+|+||. ++|||||+|+++++||+|||| |+|+||+|++ ++|||+||+.|+|.+++|.|++|++++||||+||||+.
T Consensus 22 ~i~~~df~-k~~lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~~~p~al~G~~v~~~~nlkp~kirGv~ 100 (131)
T 2q2h_A 22 EISYADFE-KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFR 100 (131)
T ss_dssp CCCHHHHH-TSCEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEE
T ss_pred ccCHHHhh-ccCEEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcccChhhcCCCEEECceEEcceEECCEE
Confidence 59999997 599999999999999999999 9999999985 68999999999999999999999999999999999999
Q ss_pred cceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343 173 SHGMLLAASDAAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 173 SeGMLLsase~~~~~VelL~pp~~a~~G~rV 203 (269)
|||||||++++ ++++.+|.||+++++|+++
T Consensus 101 SeGMl~sa~~~-~~gi~lL~p~~~~~~G~~i 130 (131)
T 2q2h_A 101 SEVLTLGFADA-NGDIVLAAVERPVPNGEKM 130 (131)
T ss_dssp ECCEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred eCcEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence 99999999854 3579999999999999986
No 12
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=99.97 E-value=4.8e-33 Score=225.25 Aligned_cols=109 Identities=39% Similarity=0.556 Sum_probs=98.4
Q ss_pred CceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceec
Q 024343 94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKS 173 (269)
Q Consensus 94 ~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~S 173 (269)
++|+|+||. ++|||||+|+++++||+|||||+|+||+|+ +.|||+||+..+|++++|.|++|++++||||+||||+.|
T Consensus 2 ~~i~~~df~-k~dlrVG~I~~~e~hp~adkL~v~~Vd~G~-~~~qiv~g~a~~~~~~~l~G~~v~~~~nikp~klrGv~S 79 (111)
T 1pxf_A 2 ETVAYADFA-RLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETS 79 (111)
T ss_dssp CCSSHHHHH-HSCEEEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCC
T ss_pred CccCHHHhh-cccEEEEEEEEEEECCCCCeEEEEEEEeCC-CceEEEEeccCcccchhcCCCEEEEEEEEecccCCCEec
Confidence 369999997 599999999999999999999999999997 689999998888899999999999999999999999999
Q ss_pred ceEEeeeecCCCCcEEEEcCCCCCCCCceEE
Q 024343 174 HGMLLAASDAAHENVELLEPPQGSVPGERIW 204 (269)
Q Consensus 174 eGMLLsase~~~~~VelL~pp~~a~~G~rV~ 204 (269)
||||||+.++++..+.|+.|+.++++|++|.
T Consensus 80 ~GMlL~a~~ed~~~~~l~~p~~~~~~G~~vv 110 (111)
T 1pxf_A 80 ECMLLCAETDDGSESVLLTPERMMPAGVRVV 110 (111)
T ss_dssp CCCBCEEECTTSCCEEECCCSSCCCTTCBCC
T ss_pred ceEEEEecccCCCcEEEEcCCCCCCCCCEec
Confidence 9999777765544566888888899999874
No 13
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.92 E-value=6.4e-27 Score=236.84 Aligned_cols=105 Identities=49% Similarity=0.745 Sum_probs=0.0
Q ss_pred ceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343 95 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH 174 (269)
Q Consensus 95 ~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se 174 (269)
+|+|+||.+ +|||||+|++|++||+|||||+|+||+|+ ++||||||++|+|.+++|+|++|++++||||+||||++||
T Consensus 617 ~i~~~~f~k-~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g~~~~~~~~~l~G~~v~~~~nl~~~k~~g~~S~ 694 (722)
T 1rqg_A 617 YVKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ 694 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHhHhhh-cceEEEEEEEEEeCCCCCcceEEEEEcCC-ceEEEEECCcccCCHHHcCCCEEeCeeEEcceeeCCcccC
Confidence 699999974 99999999999999999999999999998 5899999999999999999999999999999999999999
Q ss_pred eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343 175 GMLLAASDAAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 175 GMLLsase~~~~~VelL~pp~~a~~G~rV 203 (269)
|||||++++ ++|.+|.|+.++++|++|
T Consensus 695 gM~~~~~~~--~~i~~l~~~~~~~~G~~~ 721 (722)
T 1rqg_A 695 GMLLAADDG--ERVALLMPDKEVKLGAKV 721 (722)
T ss_dssp -----------------------------
T ss_pred eEEEEeeCC--CcEEEeCCCCCCCCCCCC
Confidence 999999643 589899888899999987
No 14
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.1e-25 Score=203.55 Aligned_cols=110 Identities=26% Similarity=0.380 Sum_probs=86.5
Q ss_pred cccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEe
Q 024343 99 KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLL 178 (269)
Q Consensus 99 ~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLL 178 (269)
++|. ++|||||+|+++++||+|||||+|+||+|+ ++|||+||+.||. .| .+++++||+|++|||+.|+||||
T Consensus 131 ~~f~-kldirVGkIl~ve~hP~AdKL~v~~VD~G~-~~rqIV~Ga~n~~-----~G-~vVvVAnLpp~klrGv~SeGMlc 202 (241)
T 2e8g_A 131 DPVI-AVDIVVGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTNDLTVK-----EG-NRVAVALLPPRNFFGIVSEGMFL 202 (241)
T ss_dssp CGGG-GSCEEEEEEEEEEECTTCTTCEEEEEECSS-CEEEEEESCTTCC-----TT-CEEEEECCCCEEETTEEECCEEC
T ss_pred Cccc-ccCEEEEEEEEEEECCCCCccEEEEEEeCC-ceEEEEECCcccc-----CC-CEEEEEECCCcccCCcccCcEEe
Confidence 4665 589999999999999999999999999998 6899999999987 47 67778999999999999999999
Q ss_pred eeecCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCC
Q 024343 179 AASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQP 234 (269)
Q Consensus 179 sase~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p 234 (269)
|+++ + +...+ .|..+.| + ...|+ ..+|||||+||+++.
T Consensus 203 sa~E----g--l~~~~----~G~I~~L---p--~~~p~---~~lnpkkk~~e~~~~ 240 (241)
T 2e8g_A 203 GAGE----G--VLKNV----KGEIGGL---P--KGIPL---EALNETRNAVEAFLK 240 (241)
T ss_dssp EETT----E--ECCBC----BSCTTSC---C--BSCCG---GGGHHHHHHHHHHHC
T ss_pred ECcc----C--CCCCC----CCcEEEC---C--CCCch---hhcCchhhHHHHHhc
Confidence 9975 3 22222 2422122 1 12222 357899999999875
No 15
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=99.92 E-value=3.8e-25 Score=195.22 Aligned_cols=91 Identities=27% Similarity=0.369 Sum_probs=82.1
Q ss_pred CCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE---------Eeeccceecceecce
Q 024343 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL---------ANLKPRNMRGVKSHG 175 (269)
Q Consensus 105 ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl---------~NLKprkirGv~SeG 175 (269)
-++|||+|+++++||+|||||+|+||+|+ ++|||+||++|++ .|++|+++ +||||+||||+.|+|
T Consensus 91 ~~vvVG~V~~~e~hP~ADkL~v~~VdvG~-~~~qIV~Ga~n~~-----~G~kVvva~~Ga~lp~g~nIk~~KlrGv~S~G 164 (199)
T 3bu2_A 91 PKFVVGYVETKDKHPDADKLSVLSVDVAT-EKLQIVCGAPNVE-----AGQKVVVAKVGAVMPSGMVIKDAELRGVASSG 164 (199)
T ss_dssp CSEEEEEEEEEEECTTTSSCEEEEEECSS-CEEEEEECCTTCC-----TTCEEEEECTTCBCTTSCBCCEEEETTEEEES
T ss_pred CCeEEEEEEEEEECCCCCEEEEEEEEeCC-EEEEEEeCCchhh-----CCCEEEEEecCCCccCCceEeeeEEcCceecc
Confidence 47999999999999999999999999995 7899999999997 89999998 899999999999999
Q ss_pred EEeeeec----C--CCCcEEEEcCCCCCCCCceE
Q 024343 176 MLLAASD----A--AHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 176 MLLsase----~--~~~~VelL~pp~~a~~G~rV 203 (269)
||||+++ + ++.++.++ |+++++|+++
T Consensus 165 MlcSa~ELGl~~~~~~~gI~~l--~~~~~~G~~v 196 (199)
T 3bu2_A 165 MICSMKELGLPNAPQEKGIMVL--SDDYTVGQSF 196 (199)
T ss_dssp EECCTTTTTCSSCBSCCSCCEE--CTTSCTTSBS
T ss_pred EEeehhhcCCCcccCCCeEEEC--CCCCCCCCcc
Confidence 9999986 2 34565444 7889999997
No 16
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.84 E-value=3.3e-21 Score=197.78 Aligned_cols=91 Identities=31% Similarity=0.421 Sum_probs=84.0
Q ss_pred CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE---------EeeccceecceecceE
Q 024343 106 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL---------ANLKPRNMRGVKSHGM 176 (269)
Q Consensus 106 dIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl---------~NLKprkirGv~SeGM 176 (269)
+|+||+|+++++||++|||++|+||+|+++++|||||++|+. +|++|+|+ +|||++||||+.|+||
T Consensus 44 ~~~vg~v~~~~~hp~adkL~~~~vd~G~~~~~~iv~ga~n~~-----~g~~v~va~~Ga~l~~~~~ik~~k~rG~~S~GM 118 (795)
T 3pco_B 44 GVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCR-----QGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGM 118 (795)
T ss_dssp CEEEEEEEEEECCTTCSSCCEEEEECSSSSCEEEECCCSSCC-----TTCEEEEECTTCBCTTSCBCCCEESSSSEESSE
T ss_pred CeEEEEEEEEEecCCCCeEEEEEEEcCCCcEEEEEeCCcccc-----CCCEEEEEecCcCcCCCceEcccccCCeecCcE
Confidence 599999999999999999999999999988999999999998 89999998 7999999999999999
Q ss_pred Eeeeec----CCCCcEEEEcCCCCCCCCceE
Q 024343 177 LLAASD----AAHENVELLEPPQGSVPGERI 203 (269)
Q Consensus 177 LLsase----~~~~~VelL~pp~~a~~G~rV 203 (269)
||+++| ++++|+.+| |+++++|+++
T Consensus 119 lcs~~elgl~~~~~gi~~l--~~~~~~G~~~ 147 (795)
T 3pco_B 119 LCSFSELGISDDHSGIIEL--PADAPIGTDI 147 (795)
T ss_dssp ECCSGGGTSCCCCSSCCEE--CSSCCTTSBH
T ss_pred ecchhhcCCCCCCCeEEEC--CccccCCCCH
Confidence 999986 456787555 7889999998
No 17
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=99.76 E-value=1.6e-19 Score=185.17 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=81.4
Q ss_pred CCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcc----cccccCCCEEEE-EEeeccceecceecceEEee
Q 024343 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYV----PLEFLQDRSVVV-LANLKPRNMRGVKSHGMLLA 179 (269)
Q Consensus 105 ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~----~~EeL~GkkVvV-l~NLKprkirGv~SeGMLLs 179 (269)
-+++||+|+++++||+| ||++|+||+| ++||||||++|++ -+..+.|++++. .+||||+||||+.|+||||+
T Consensus 43 ~~~~vg~V~~~~~hp~a-kL~v~~Vd~G--~~~qIv~Ga~n~~~g~~v~~a~~G~~l~~~~~~ik~~klrGv~S~GMlcs 119 (785)
T 1b7y_B 43 RGVVFARVLEAHPIPGT-RLKRLVLDAG--RTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMALS 119 (785)
T ss_dssp TTEEEEEEEEEEECTTS-SCEEEEEESS--SEEEEEECCTTCCTTCEEEEECTTCCCSSCSSCCCCEECSSSEECSEECC
T ss_pred CCeEEEEEEEEEECCCC-eEEEEEEecC--CEEEEEeCCCccCCCCEeEEEcCCCEeecCceEEeeeEeccccccceeee
Confidence 36999999999999999 9999999999 6899999999995 444555555554 57999999999999999999
Q ss_pred eec----CCCCcEEEEcCCCCC-CCCceE--EeC
Q 024343 180 ASD----AAHENVELLEPPQGS-VPGERI--WFG 206 (269)
Q Consensus 180 ase----~~~~~VelL~pp~~a-~~G~rV--~~~ 206 (269)
+++ +++.++ +.+|+++ ++|+++ +++
T Consensus 120 ~~eLgl~~~~~gi--~~l~~~~~~~G~~~~~~l~ 151 (785)
T 1b7y_B 120 PRELGVGEYGGGL--LEFPEDALPPGTPLSEAWP 151 (785)
T ss_dssp HHHHTSCSCCSSC--CCBCTTSSCTTCBGGGTSC
T ss_pred HHHhCCCCCCCce--EECccccccCCCcHHHccC
Confidence 985 445665 5557888 999999 555
No 18
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=99.74 E-value=2e-18 Score=177.02 Aligned_cols=87 Identities=26% Similarity=0.415 Sum_probs=79.1
Q ss_pred CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE---------EeeccceecceecceE
Q 024343 106 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL---------ANLKPRNMRGVKSHGM 176 (269)
Q Consensus 106 dIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl---------~NLKprkirGv~SeGM 176 (269)
+++||+|++|++| ||++|+||+|+++++|||||++|+. .|++|+|+ +|||++||||+.|+||
T Consensus 44 ~~vvg~v~~~~~h----kL~~~~vd~g~~~~~~Iv~ga~n~~-----~g~~v~va~~Ga~lpg~~~ik~~klrG~~S~GM 114 (795)
T 2rhq_B 44 NLVVGYIQSKEKG----SGNICQVDIGEEEPVQIVCGAPNVD-----AGQHVIVAKVGGRLPGGIKIKRAKLRGERSEGM 114 (795)
T ss_dssp EEEEEEEEEEECS----SSCEEEEECSSSSCEEEECCCTTCC-----TTCEEEEEEEEEEETTTEECCCEEETTEEECSE
T ss_pred CeEEEEEEEEEEE----eEEEEEEEcCCCeEEEEEeCCchhh-----CCCEEEEEecCcCcCCCceEcceeecCccccce
Confidence 6999999999999 9999999999877899999999997 99999999 8999999999999999
Q ss_pred Eeeeec----CC------CCcEEEEcCCCCCCCCceE
Q 024343 177 LLAASD----AA------HENVELLEPPQGSVPGERI 203 (269)
Q Consensus 177 LLsase----~~------~~~VelL~pp~~a~~G~rV 203 (269)
|||++| ++ +.++ +.+|+++++|+++
T Consensus 115 lcs~~elGl~~~~~~~~~~~gi--~~l~~~~~~G~~~ 149 (795)
T 2rhq_B 115 ICSLQEIGISSNVVPKAYENGI--FVFPTEVEPGTDA 149 (795)
T ss_dssp ECCSGGGTCCGGGSCHHHHTSC--CBCSSCCCTTSBH
T ss_pred eeeHHHcCCCcccccccCCCeE--EECCCCCcCCCch
Confidence 999986 33 4675 4558889999998
No 19
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=26.36 E-value=1.1e+02 Score=25.46 Aligned_cols=31 Identities=23% Similarity=-0.062 Sum_probs=24.1
Q ss_pred EEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEe
Q 024343 108 RVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICS 141 (269)
Q Consensus 108 rVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvS 141 (269)
.||.|+.++..+ +-++.+||.|.+....++.
T Consensus 52 IvGiVv~~~~~~---~~~~ytIDD~TG~~I~cv~ 82 (159)
T 3kf6_A 52 IVGYIAAIDIYE---GKHVLTVDDCSGMVLRVVF 82 (159)
T ss_dssp EEEEEEEEEEET---TEEEEEEECSSSCEEEEEE
T ss_pred EEEEEEEEEEeC---CEEEEEEecCCCCeEEEEE
Confidence 579999999764 5799999999875455544
No 20
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=24.75 E-value=1.4e+02 Score=22.78 Aligned_cols=45 Identities=22% Similarity=-0.008 Sum_probs=30.5
Q ss_pred EEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCC--CcccccccCCCEEEEE
Q 024343 108 RVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLV--KYVPLEFLQDRSVVVL 160 (269)
Q Consensus 108 rVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~--n~~~~EeL~GkkVvVl 160 (269)
+-|+|+++.. + . -.||+|+ ..|.|...+. .-.+++-..|.+|+|-
T Consensus 5 IP~kVvei~~--~--~---A~Vd~~G-v~r~V~l~Lv~~~~~~~~~~vGD~VLVH 51 (90)
T 2ot2_A 5 VPGQIRTIDG--N--Q---AKVDVCG-IQRDVDLTLVGSCDENGQPRVGQWVLVH 51 (90)
T ss_dssp EEEEEEEECS--S--E---EEEECSS-SEEEEECTTTCSBCTTSCBCTTCEEEEE
T ss_pred cceEEEEEcC--C--c---EEEEcCC-eEEEEEEeeeeccCCCCCCCCCCEEEEe
Confidence 3588988843 2 1 7889985 6788888776 2122444589999984
Done!