RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024343
(269 letters)
>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing
EMAP2-like proteins. This family contains a diverse
fraction of tRNA binding proteins, including
Caenorhabditis elegans methionyl-tRNA synthetase
(CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS),
Saccharomyces cerevisiae Arc1p, human p43 and EMAP2.
CeMetRS and hTyrRS aminoacylate their cognate tRNAs.
Arc1p is a transactivator of yeast methionyl-tRNA and
glutamyl-tRNA synthetases. This domain has general tRNA
binding properties. In a subset of this family this
domain has the added capability of a cytokine. For
example the p43 component of the Human aminoacyl-tRNA
synthetase complex is cleaved to release EMAP-II
cytokine. EMAP-II has multiple activities during
apoptosis, angiogenesis and inflammation and
participates in malignant transformation. A EMAP-II-like
cytokine also is released from hTyrRS upon cleavage. The
active cytokine heptapeptide locates to this domain.
Length = 105
Score = 185 bits (472), Expect = 3e-60
Identities = 70/105 (66%), Positives = 85/105 (80%)
Query: 100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVV 159
+ LDIRVG+I+K +H +ADSLYVEE+D+GE EPR I SGLVK+VPLE +Q+R VVV
Sbjct: 1 VDPSRLDIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVV 60
Query: 160 LANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
L NLKPR MRGVKS GM+L AS+A HE VELLEPP+G+ PGER+
Sbjct: 61 LCNLKPRKMRGVKSQGMVLCASNADHEKVELLEPPEGAKPGERVT 105
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 198 bits (506), Expect = 1e-58
Identities = 83/166 (50%), Positives = 111/166 (66%), Gaps = 8/166 (4%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
LDIRVG I+KA +H +ADSLYVEE+DVGE PR + SGLVKY+PLE +Q+R V VL NLK
Sbjct: 643 LDIRVGLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLK 702
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI-WFGSQEDKENQPAPASPNQV 223
P MRG+KS M+LAAS++ H VEL+EPP+ + GER+ + G + + ++ P
Sbjct: 703 PAAMRGIKSQAMVLAASNSDHTKVELVEPPESAAVGERVTFPGFEGEPDDVLNP------ 756
Query: 224 QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
KKK+WE +QP L T++ LVA + TSAG S+ N +I
Sbjct: 757 -KKKVWETLQPDLHTNSELVACYKDVPFTTSAGVCKVASIANGSIR 801
>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known
as the Myf domain in literature. This domain is found in
a diverse collection of tRNA binding proteins, including
prokaryotic phenylalanyl tRNA synthetases (PheRS),
methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA
synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p,
Thermus thermophilus CsaA, Aquifex aeolicus Trbp111,
human p43 and human EMAP-II. PheRS, MetRS and hTyrRS
aminoacylate their cognate tRNAs. Arc1p is a
transactivator of yeast methionyl-tRNA and glutamyl-tRNA
synthetases. The molecular chaperones Trbp111 and CsaA
also contain this domain. CsaA has export related
activities; Trbp111 is structure-specific recognizing
the L-shape of the tRNA fold. This domain has general
tRNA binding properties. In a subset of this family
this domain has the added capability of a cytokine. For
example the p43 component of the Human aminoacyl-tRNA
synthetase complex is cleaved to release EMAP-II
cytokine. EMAP-II has multiple activities during
apoptosis, angiogenesis and inflammation and
participates in malignant transformation. An
EMAP-II-like cytokine is released from hTyrRS upon
cleavage. The active cytokine heptapeptide locates to
this domain. For homodimeric members of this group which
include CsaA, Trbp111 and Escherichia coli MetRS this
domain acts as a dimerization domain.
Length = 99
Score = 139 bits (352), Expect = 5e-42
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPR 166
+RVG+I++A H AD LYV +VD+GE +PR I SG P E L + VVV NLKP+
Sbjct: 1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPK 60
Query: 167 NMRGVKSHGMLLAASD--AAHENVELLEPPQGSVPGERI 203
+RGV+S GMLL+A + +V +LE P+ + G+RI
Sbjct: 61 KLRGVESEGMLLSAEELGLEEGSVGILELPEDAPVGDRI 99
>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain. This domain is
found in prokaryotic methionyl-tRNA synthetases,
prokaryotic phenylalanyl tRNA synthetases the yeast GU4
nucleic-binding protein (G4p1 or p42, ARC1), human
tyrosyl-tRNA synthetase, and endothelial-monocyte
activating polypeptide II. G4p1 binds specifically to
tRNA form a complex with methionyl-tRNA synthetases. In
human tyrosyl-tRNA synthetase this domain may direct
tRNA to the active site of the enzyme. This domain may
perform a common function in tRNA aminoacylation.
Length = 95
Score = 136 bits (345), Expect = 5e-41
Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPR 166
+RVG++++A +H AD L V +VDVGE E R I SG V P E L + VVV+ANLKP
Sbjct: 1 LRVGKVLEAEKHPNADKLLVLKVDVGEEE-RQIVSGAVNVYPPEELVGKLVVVVANLKPA 59
Query: 167 NMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGER 202
+RGV+S GM+L+A + +V LLEPP PG R
Sbjct: 60 KLRGVESEGMILSAEELDGGSVGLLEPPGDVPPGTR 95
>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing
Escherichia coli methionyl-tRNA synthetase
(EcMetRS)-like proteins. This family includes EcMetRS
and Aquifex aeolicus Trbp111 (AaTrbp111). This domain
has general tRNA binding properties. MetRS
aminoacylates methionine transfer RNAs (tRNAmet).
AaTrbp111 is structure-specific molecular chaperone
recognizing the L-shape of the tRNA fold. AaTrbp111
plays a role in nuclear trafficking of tRNAs. The
functional unit of EcMetRs and AaTrbp111 is a homodimer,
this domain acts as the dimerization domain.
Length = 105
Score = 111 bits (279), Expect = 4e-31
Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
+D+RVG++++A R E +D L VD+GE E R I SG+ K+ P E L + VVV+ANLK
Sbjct: 9 VDLRVGKVLEAERVEGSDKLLKLTVDLGE-EERQIVSGIAKFYPPEELVGKKVVVVANLK 67
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
PR +RGV+S GM+LAA D ++LL P + PG R+
Sbjct: 68 PRKLRGVESQGMILAAEDG--GKLKLLTPDEEVEPGSRVS 105
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 116 bits (294), Expect = 2e-29
Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
+D+RV +I++A + E AD L +D+GE E R + SG+ E L + VV++ANL
Sbjct: 576 VDLRVAKIVEAEKVEGADKLLKLTLDLGE-ETRQVFSGIKSAYDPEELVGKLVVMVANLA 634
Query: 165 PRNMR-GVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
PR M+ GV S GM+LAA ++ LLEP +G+ PG R+
Sbjct: 635 PRKMKFGV-SEGMVLAAGPGG-GDLFLLEPDEGAKPGMRV 672
>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only].
Length = 123
Score = 100 bits (251), Expect = 8e-27
Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Query: 86 LPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEA-EPRIICSGLV 144
L R +E + + D A + D+RVG++++A H AD L V +VD+G+ EPR I G
Sbjct: 1 LTRIGLEVEEIEIDDFAKV-DLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAP 59
Query: 145 KYVPLEFLQDRSVVVLAN---LKPRNMRGVKSHGMLLAAS--DAAHENVELLEPPQGSVP 199
+ E L V + N LKP +RGV+S GMLL+A + ENV +L +G P
Sbjct: 60 NFYAGEKLVGAKVGAVLNGGKLKPAKLRGVESEGMLLSAEELGLSDENVGILTLDEGVPP 119
Query: 200 GERI 203
G ++
Sbjct: 120 GTKV 123
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 105 bits (264), Expect = 1e-25
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
+++RV +++A + E++D L +VD+GE EPR I SG+ K+ P E L + VVV+ANLK
Sbjct: 551 VELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLK 610
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
P + G +S GM+LAA D + LL + G ++
Sbjct: 611 PAKLMGEESQGMILAAEDD--GKLTLLTVDKEVPNGSKV 647
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase (metG)
is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase that
is present at the C-terminus of MetG in some species (E.
coli, B. subtilis, Thermotoga maritima, Methanobacterium
thermoautotrophicum), and as a separate beta chain in
Aquifex aeolicus. It is absent in a number of other
species (e.g. Mycoplasma genitalium, Mycobacterium
tuberculosis), while Pyrococcus horikoshii has both a
full length MetG and a second protein homologous to the
beta chain only. Proteins hit by This model should
called methionyl-tRNA synthetase beta chain if and only
if the model metG hits a separate protein not also hit
by This model [Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 94.4 bits (235), Expect = 3e-24
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 77 AETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEP 136
E E P E ++ + D + D+RVG+I+KA R E++D L ++D+G+ E
Sbjct: 15 KEKKDEGEKALEPQKE--TITIDDFEKV-DLRVGKILKAERVEKSDKLLKLKLDLGD-EK 70
Query: 137 RIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQG 196
R I SG+ Y E L + V+V+ANLKP + GVKS GM+LAA D + + LL P Q
Sbjct: 71 RQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGVKSEGMILAAEDDG-KVLFLLSPDQE 129
Query: 197 SVPGERI 203
++ GERI
Sbjct: 130 AIAGERI 136
>gnl|CDD|239197 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-containing CsaA-like
proteins. CsaA is a molecular chaperone with export
related activities. CsaA has a putative tRNA binding
activity. The functional unit of CsaA is a homodimer and
this domain acts as a dimerization domain.
Length = 107
Score = 86.5 bits (215), Expect = 1e-21
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 105 LDIRVGRIIKAWRHEEA-DSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
+D+RVG I++ EA Y +VD GE + + + KY E L R VV + N
Sbjct: 9 VDLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNF 68
Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
P+ + GV S ++L A D V LL P + G ++
Sbjct: 69 PPKQIAGVLSEVLVLGADDEG-GEVVLLVPDREVPNGAKV 107
>gnl|CDD|182232 PRK10089, PRK10089, tRNA-binding protein; Provisional.
Length = 112
Score = 69.1 bits (170), Expect = 5e-15
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 104 MLDIRVGRIIKAWRHEEADSL-YVEEVDVGEAEPRIICSG--LVKYVPLEFLQDRSVVVL 160
+DIRVG I++A EA Y +D GE E + S + + E L + VV +
Sbjct: 11 KVDIRVGTIVEAEPFPEARKPAYKLWIDFGE-EIGVKQSSAQITPHYTPEELIGKQVVAV 69
Query: 161 ANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
N P+ + G S ++L D V LL P + G ++
Sbjct: 70 VNFPPKQIAGFMSEVLVLGFEDED-GEVVLLTPDRPVPNGVKL 111
>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing
prokaryotic phenylalanly tRNA synthetase (PheRS) beta
chain. PheRS aminoacylate phenylalanine transfer RNAs
(tRNAphe). PheRSs belong structurally to class II
aminoacyl tRNA synthetases (aaRSs) but, as they
aminoacylate the 2'OH of the terminal ribose of tRNA
they belong functionally to class 1 aaRSs. This domain
has general tRNA binding properties and is believed to
direct tRNAphe to the active site of the enzyme.
Length = 103
Score = 56.0 bits (136), Expect = 2e-10
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 18/87 (20%)
Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSG--LVKYVPLEFLQDRSVVV----- 159
+ VG++++ H AD L V +VD+GE +P I G V+ VVV
Sbjct: 1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVR-------AGDKVVVALPGA 53
Query: 160 -LAN---LKPRNMRGVKSHGMLLAASD 182
L +K R +RGV+S GML +A +
Sbjct: 54 VLPGGLKIKKRKLRGVESEGMLCSAKE 80
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit,
non-spirochete bacterial. Every known example of the
phenylalanyl-tRNA synthetase, except the monomeric form
of mitochondrial, is an alpha 2 beta 2 heterotetramer.
The beta subunits break into two subfamilies that are
considerably different in sequence, length, and pattern
of gaps. This model represents the subfamily that
includes the beta subunit from Bacteria other than
spirochetes, as well as a chloroplast-encoded form from
Porphyra purpurea. The chloroplast-derived sequence is
considerably shorter at the amino end, however, so This
model was built in fragment mode [Protein synthesis,
tRNA aminoacylation].
Length = 797
Score = 57.7 bits (140), Expect = 2e-09
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLV-----KYVPLEFLQDRSVVVLA 161
+ VG++++ H AD L V +VD+GE E I G K V + L L
Sbjct: 46 VVVGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVCGAPNVEAGKKVAV-ALPG---AKLP 101
Query: 162 N---LKPRNMRGVKSHGMLLAASD 182
N +K +RGV+S GML + S+
Sbjct: 102 NGLKIKKSKLRGVESEGMLCSESE 125
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 791
Score = 57.1 bits (139), Expect = 3e-09
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 24/103 (23%)
Query: 91 VEDNSVNVKDAANMLD-IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIIC------SGL 143
VE V+D A L + VG++++ +H AD L V +VDVGE +I+C +G
Sbjct: 32 VEG----VEDVAAGLSGVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCGAPNVRAGD 87
Query: 144 VKYVPLEFLQDRSVV--VLAN---LKPRNMRGVKSHGMLLAAS 181
VP+ ++ VL +K +RGV+S GML +AS
Sbjct: 88 --KVPV------ALPGAVLPGGFKIKKAKLRGVESEGMLCSAS 122
>gnl|CDD|131277 TIGR02222, chap_CsaA, export-related chaperone protein CsaA. This
model describes Bacillus subtilis CsaA, an
export-related chaperone that interacts with the Sec
system, and related proteins from a number of other
bacteria and archaea. The crystal structure is known for
the homodimer from Thermus thermophilus [Protein fate,
Protein folding and stabilization, Protein fate, Protein
and peptide secretion and trafficking].
Length = 107
Score = 47.4 bits (113), Expect = 3e-07
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 105 LDIRVGRIIKAWRHEEA-DSLYVEEVDVG-EAEPRIICSGLVKYVPLEFLQDRSVVVLAN 162
LD+RVGRI++A EA Y VD G E + + + K E L R VV + N
Sbjct: 7 LDLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAVVN 66
Query: 163 LKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
P+ + G S ++L D V LL+P + G +I
Sbjct: 67 FPPKQIAGFLSEVLVLGVIDEQ-GRVVLLQPDRPVPNGTKI 106
>gnl|CDD|225315 COG2517, COG2517, Predicted RNA-binding protein containing a
C-terminal EMAP domain [General function prediction
only].
Length = 219
Score = 46.4 bits (110), Expect = 4e-06
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 98 VKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSV 157
+ D +DI VG ++ +H AD L V V++G ++ + L + + V
Sbjct: 113 INDPVIAVDIVVGEVMSVGKHPNADKLLVTVVNIGGRAVTVVTNDL------DVREGDRV 166
Query: 158 VVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPP 194
V A L PRN GV S GM L A D E EL + P
Sbjct: 167 AV-ALLPPRNFFGVVSEGMFLGAKDVDGEPGELPKGP 202
>gnl|CDD|225503 COG2954, COG2954, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 156
Score = 28.9 bits (65), Expect = 2.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 99 KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDV 131
DA ML GR+I+ R+ ++ EVDV
Sbjct: 71 ADAEEMLTTACGRVIEKTRYPVRHGGFLWEVDV 103
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 29.7 bits (67), Expect = 2.0
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 15/49 (30%)
Query: 201 ERIWFGSQEDKEN------------QPA---PASPNQVQKKKIWELVQP 234
+ +W + E+ + +PA PA P+ +K ++EL++P
Sbjct: 1096 KELWGYAAEEPLSNEDLLKLRYQGIRPAPGYPACPDHTEKATMFELLEP 1144
>gnl|CDD|169427 PRK08402, PRK08402, replication factor A; Reviewed.
Length = 355
Score = 28.6 bits (64), Expect = 3.1
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 88 RPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYV 147
R +++ ++ AA +L +G + EEA +++ ++ G I+ L KY
Sbjct: 29 REIMKEEGISEHAAALLLAEELG--VNLEGEEEAPLMHISDLVPGMRGVNIVGRVLRKYP 86
Query: 148 PLEFLQ-DRSVVVLANL 163
P E+ + D S +A+L
Sbjct: 87 PREYTKKDGSTGRVASL 103
>gnl|CDD|224328 COG1410, MetH, Methionine synthase I, cobalamin-binding domain
[Amino acid transport and metabolism].
Length = 842
Score = 28.9 bits (65), Expect = 3.6
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 14/48 (29%)
Query: 201 ERIWFGSQEDKENQ-----------PA---PASPNQVQKKKIWELVQP 234
+ +W + E +N+ PA PA P+ +K ++EL++
Sbjct: 761 KELWGYADEPLDNEDLIKERYQGIRPAPGYPACPDHTEKATLFELLEV 808
>gnl|CDD|143629 cd07891, CYTH-like_CthTTM-like_1, CYTH-like Clostridium
thermocellum TTM-like subgroup 1. This subgroup
contains the triphosphate tunnel metalloenzyme (TTM)
from Clostridium thermocellum (CthTTM) and similar
proteins. These are found primarily in bacteria. CthTTM
is a metal dependent tripolyphosphatase, nucleoside
triphosphatase, and nucleoside tetraphosphatase. It
hydrolyzes the beta-gamma phosphoanhydride linkage of
triphosphate-containing substrates including
tripolyphosphate, nucleoside triphosphates and
nucleoside tetraphosphates. These substrates are
hydrolyzed, releasing Pi. Mg++ or Mn++ are required for
the enzyme's activity. CthTTM appears to have no
adenylate cyclase activity. This subgroup consists
chiefly of bacterial sequences. These enzymes are
members of the CYTH-like (also known as triphosphate
tunnel metalloenzyme (TTM)-like) superfamily, which have
a unique active site located within an eight-stranded
beta barrel.
Length = 148
Score = 27.9 bits (63), Expect = 3.8
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 14/50 (28%)
Query: 98 VKDAANMLDIRVGRIIKAWRHEEADSLYVE------EVDV--GEAEPRII 139
+ DA +L + G +I+ R+ V EVDV GE ++
Sbjct: 68 LADAEELLALCEGPVIEKTRY------RVPHGGHTWEVDVFHGENAGLVV 111
>gnl|CDD|226256 COG3733, TynA, Cu2+-containing amine oxidase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 654
Score = 27.4 bits (61), Expect = 9.1
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 182 DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELV 232
+ A V LLEP + V + F + + A A ++ K I+E V
Sbjct: 56 NFAFTEVTLLEPDKQEV----LAFRLENKPIERKALAVVYELDGKGIYEAV 102
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.127 0.360
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,011,145
Number of extensions: 1194294
Number of successful extensions: 751
Number of sequences better than 10.0: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 26
Length of query: 269
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 174
Effective length of database: 6,723,972
Effective search space: 1169971128
Effective search space used: 1169971128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.0 bits)