RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 024343
         (269 letters)



>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
           synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
          Length = 171

 Score =  160 bits (406), Expect = 4e-50
 Identities = 80/170 (47%), Positives = 105/170 (61%), Gaps = 6/170 (3%)

Query: 101 AANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL 160
             + LDIRVG+II   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL
Sbjct: 5   IPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVL 64

Query: 161 ANLKPRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPAS 219
            NLKP+ MRGV+S GMLL AS +  +  VE L+PP GS PGE ++    E  +       
Sbjct: 65  CNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQ-----PD 119

Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
                KKK++E +Q   K     +A   +    T  G++  +SLK  NIS
Sbjct: 120 EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 169


>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score =  142 bits (360), Expect = 3e-43
 Identities = 77/165 (46%), Positives = 101/165 (61%), Gaps = 9/165 (5%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+R+G II A +H +ADSLYVEEVDVGE  PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 6   LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 65

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQ 224
           P  MRGV S  M++ AS    E +E+L PP GSVPG+RI F   +    +P         
Sbjct: 66  PAKMRGVLSQAMVMCASSP--EKIEILAPPNGSVPGDRITF---DAFPGEPDKELN---P 117

Query: 225 KKKIWELVQPHLKTDASLVA-MLGEHLMQTSAGAVMSRSLKNANI 268
           KKKIWE +QP L T+   VA   G        G   ++++ N+ I
Sbjct: 118 KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 162


>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
           TRBP111 {Escherichia coli [TaxId: 562]}
          Length = 111

 Score =  101 bits (254), Expect = 4e-28
 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           L++RVG+I++  RHE AD LY+ +VDVG+ +     + LV Y   E L  ++VVVL NL+
Sbjct: 12  LEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQ 70

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
              MRG  S  MLL A         LL P +    G R+
Sbjct: 71  KAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109


>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
           synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
           29292]}
          Length = 107

 Score =  101 bits (252), Expect = 7e-28
 Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 3/99 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+RVG+II+   H  AD LYV +VD+G+ E R + +GL KY   E L +R VVV+ANL+
Sbjct: 11  LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 69

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           P+ +RG+ S GMLLAA D   E V LL P +    G ++
Sbjct: 70  PKKLRGIGSQGMLLAADD--GERVALLMPDKEVKLGAKV 106


>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
           TRBP111 {Aquifex aeolicus [TaxId: 63363]}
          Length = 107

 Score = 98.5 bits (245), Expect = 7e-27
 Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           +D+RV +++ A R E ++ L    + +G+ E  ++     KY   E L  + +V++ANLK
Sbjct: 11  VDLRVAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGI-AKYYTPEELVGKKIVIVANLK 69

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           PR + G++S GM+LAASD   EN+ ++ P +    G ++
Sbjct: 70  PRKIFGIESQGMILAASD--GENLSVIVPDRDVKEGAKL 106


>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
           [TaxId: 274]}
          Length = 109

 Score = 91.3 bits (226), Expect = 5e-24
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEV-DVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
           LD+RVGR+++A  HE+A     +   D+G    +   + + +    E L  R VV   NL
Sbjct: 10  LDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNL 69

Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
             + + G  S  ++L   D     V LL P +    G +++
Sbjct: 70  GAKRVAGFLSEVLVLGVPD-EAGRVVLLAPDREVPLGGKVF 109


>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 75

 Score = 24.6 bits (54), Expect = 4.2
 Identities = 4/24 (16%), Positives = 10/24 (41%)

Query: 107 IRVGRIIKAWRHEEADSLYVEEVD 130
           +   +   A R ++   L +  +D
Sbjct: 52  VETRQTSLALRRKDLALLTLVPLD 75


>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA
           {Klebsiella pneumoniae [TaxId: 573]}
          Length = 75

 Score = 23.9 bits (52), Expect = 8.4
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 107 IRVGRIIKAWRHEEADSLYVEEVD 130
           I   R+    R ++   + +E V 
Sbjct: 51  IETRRVSLVLRKKDLALIELEAVA 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 876,954
Number of extensions: 37583
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 10
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.9 bits)