Query 024344
Match_columns 269
No_of_seqs 239 out of 1075
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 1.4E-13 3E-18 97.9 5.1 54 150-203 5-60 (60)
2 smart00353 HLH helix loop heli 99.4 1.6E-12 3.4E-17 91.0 6.8 49 154-203 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.4 1.1E-12 2.3E-17 93.2 5.7 49 151-199 3-55 (55)
4 KOG1318 Helix loop helix trans 99.3 5.9E-12 1.3E-16 122.5 8.3 63 139-201 223-288 (411)
5 KOG1319 bHLHZip transcription 98.9 1.6E-09 3.5E-14 96.5 4.5 65 151-215 64-134 (229)
6 KOG4304 Transcriptional repres 98.5 8.9E-08 1.9E-12 88.3 3.7 51 150-200 33-90 (250)
7 KOG2483 Upstream transcription 98.4 1.8E-06 3.8E-11 79.1 8.9 56 148-203 58-115 (232)
8 KOG2588 Predicted DNA-binding 98.3 7.6E-07 1.6E-11 93.9 6.0 66 147-212 274-339 (953)
9 KOG3561 Aryl-hydrocarbon recep 98.2 1.3E-06 2.7E-11 91.5 5.7 52 150-201 21-75 (803)
10 PLN03217 transcription factor 98.1 9.1E-06 2E-10 64.5 6.7 54 161-215 19-78 (93)
11 KOG3960 Myogenic helix-loop-he 97.6 0.00015 3.2E-09 67.5 6.9 56 153-208 122-178 (284)
12 KOG0561 bHLH transcription fac 97.4 9.4E-05 2E-09 70.5 3.0 50 152-202 63-114 (373)
13 KOG4029 Transcription factor H 97.3 0.00022 4.8E-09 64.2 3.9 57 152-208 112-171 (228)
14 KOG3910 Helix loop helix trans 97.2 0.00042 9E-09 69.7 4.4 55 151-205 528-585 (632)
15 KOG3582 Mlx interactors and re 94.5 0.013 2.7E-07 61.4 0.6 96 148-243 650-758 (856)
16 KOG4447 Transcription factor T 94.0 0.03 6.4E-07 49.2 1.7 50 151-201 80-131 (173)
17 KOG3898 Transcription factor N 89.5 0.97 2.1E-05 42.0 6.3 48 152-200 75-125 (254)
18 KOG3558 Hypoxia-inducible fact 85.3 0.69 1.5E-05 48.8 3.0 44 155-198 52-98 (768)
19 KOG3559 Transcriptional regula 80.3 1.9 4.1E-05 43.5 3.7 45 155-199 7-54 (598)
20 KOG4395 Transcription factor A 76.8 3.4 7.5E-05 39.1 4.2 51 152-202 177-229 (285)
21 KOG3560 Aryl-hydrocarbon recep 74.1 2.6 5.7E-05 43.8 2.9 39 158-197 34-76 (712)
22 PRK15422 septal ring assembly 55.6 21 0.00045 28.3 4.0 28 188-215 13-40 (79)
23 KOG4447 Transcription factor T 54.5 9.2 0.0002 33.9 2.1 44 156-199 29-73 (173)
24 COG3074 Uncharacterized protei 53.5 22 0.00048 27.8 3.8 25 188-212 13-37 (79)
25 PF06005 DUF904: Protein of un 50.6 31 0.00067 26.4 4.2 26 188-213 13-38 (72)
26 smart00338 BRLZ basic region l 45.7 22 0.00047 25.8 2.7 25 192-216 25-49 (65)
27 PF14689 SPOB_a: Sensor_kinase 45.5 38 0.00081 24.7 3.9 41 158-206 17-57 (62)
28 KOG4571 Activating transcripti 39.2 67 0.0014 31.0 5.5 39 166-204 252-290 (294)
29 PF10393 Matrilin_ccoil: Trime 39.0 59 0.0013 23.2 3.9 32 184-215 14-45 (47)
30 KOG3582 Mlx interactors and re 36.0 14 0.0003 39.7 0.4 60 149-211 787-850 (856)
31 PF13334 DUF4094: Domain of un 35.0 84 0.0018 25.2 4.7 28 187-214 67-94 (95)
32 PF00170 bZIP_1: bZIP transcri 34.4 42 0.0009 24.3 2.7 16 157-172 17-32 (64)
33 PF13870 DUF4201: Domain of un 34.1 2.2E+02 0.0047 24.4 7.5 60 155-216 115-175 (177)
34 PF08826 DMPK_coil: DMPK coile 33.7 86 0.0019 23.4 4.2 53 156-214 8-60 (61)
35 PF03195 DUF260: Protein of un 33.6 1.5E+02 0.0033 24.0 6.0 52 164-216 39-101 (101)
36 PF07544 Med9: RNA polymerase 33.6 2.2E+02 0.0048 21.9 6.9 46 164-215 33-81 (83)
37 COG3352 FlaC Putative archaeal 32.2 1.2E+02 0.0026 26.9 5.5 63 162-224 47-110 (157)
38 PRK13729 conjugal transfer pil 28.4 5.9E+02 0.013 26.3 10.4 55 153-216 69-127 (475)
39 PF09006 Surfac_D-trimer: Lung 26.4 87 0.0019 22.4 3.0 23 195-217 1-23 (46)
40 PRK00846 hypothetical protein; 25.1 3.4E+02 0.0073 21.2 7.6 54 160-216 7-64 (77)
41 PF14197 Cep57_CLD_2: Centroso 24.2 1.5E+02 0.0032 22.5 4.1 30 184-213 38-67 (69)
42 PF09789 DUF2353: Uncharacteri 23.6 2.8E+02 0.0061 27.1 6.9 55 160-215 38-101 (319)
43 PF02185 HR1: Hr1 repeat; Int 22.4 3.2E+02 0.0069 20.0 6.8 53 155-216 11-63 (70)
44 TIGR00986 3a0801s05tom22 mitoc 21.8 66 0.0014 28.1 2.0 35 163-198 50-84 (145)
45 PF07716 bZIP_2: Basic region 21.3 1E+02 0.0022 21.7 2.7 15 196-210 35-49 (54)
46 PF05164 ZapA: Cell division p 21.0 2.8E+02 0.006 20.6 5.2 35 161-198 27-61 (89)
47 PF07334 IFP_35_N: Interferon- 20.6 1.6E+02 0.0034 23.1 3.7 29 187-215 1-29 (76)
48 KOG0139 Short-chain acyl-CoA d 20.4 1.2E+02 0.0026 30.4 3.7 27 188-214 289-328 (398)
49 PF10465 Inhibitor_I24: PinA p 20.0 82 0.0018 27.1 2.2 20 183-202 120-139 (140)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.44 E-value=1.4e-13 Score=97.87 Aligned_cols=54 Identities=37% Similarity=0.654 Sum_probs=48.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 024344 150 TDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 150 ~~~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~ 203 (269)
+..|+..||.||++||+.|..|+.|||.+ ...++|++||..||+||+.|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999998 2445999999999999999998763
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.37 E-value=1.6e-12 Score=91.01 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 024344 154 SLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 154 ~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~qV~ 203 (269)
+..||+||++||+.|..|+.|||.+ .++ +|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999964 454 999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.36 E-value=1.1e-12 Score=93.23 Aligned_cols=49 Identities=37% Similarity=0.739 Sum_probs=44.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHH
Q 024344 151 DSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 199 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLVP~~----~K~~dKasIL~eAI~YIk~LQ 199 (269)
..|+..||+||.+||+.|..|+.|||.+ ....+|++||+.||+||+.||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 3699999999999999999999999987 233599999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.30 E-value=5.9e-12 Score=122.47 Aligned_cols=63 Identities=35% Similarity=0.560 Sum_probs=53.7
Q ss_pred ccccccccCCCCCccchHHHHHHHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHH
Q 024344 139 YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQ 201 (269)
Q Consensus 139 ~~~~r~rr~~~~~~H~~aER~RRekIner~~~LrsLVP~~~K---~~dKasIL~eAI~YIk~LQ~q 201 (269)
......|.+++++.|+.+||+||++||++|++|..|||.|+. ..+|..||..+++||+.||+.
T Consensus 223 ~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~ 288 (411)
T KOG1318|consen 223 DATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQT 288 (411)
T ss_pred ccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHH
Confidence 344445677788999999999999999999999999999942 137999999999999999943
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.88 E-value=1.6e-09 Score=96.48 Aligned_cols=65 Identities=31% Similarity=0.537 Sum_probs=55.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCCCCC------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 151 DSHSLAERARREKISERMKILQDLVPGCNKV------IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLVP~~~K~------~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
..|.-+||+||+-||..+..|+.|||.|... ..||.||.++|+||.+|+.++...+.++.+|+..
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~ 134 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKD 134 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999987432 3799999999999999998777777666666653
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.49 E-value=8.9e-08 Score=88.28 Aligned_cols=51 Identities=33% Similarity=0.499 Sum_probs=44.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhcCCCCCCC-------CChhhHHHHHHHHHHHHHH
Q 024344 150 TDSHSLAERARREKISERMKILQDLVPGCNKV-------IGKALVLDEIINYIQSLQR 200 (269)
Q Consensus 150 ~~~H~~aER~RRekIner~~~LrsLVP~~~K~-------~dKasIL~eAI~YIk~LQ~ 200 (269)
+..|-++||+||.|||+.+.+|++|||.+-++ ++||.||+-|++|++.||.
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~ 90 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQR 90 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999965322 3899999999999999994
No 7
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.36 E-value=1.8e-06 Score=79.14 Aligned_cols=56 Identities=29% Similarity=0.405 Sum_probs=46.7
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHhcCCCCCCCC--ChhhHHHHHHHHHHHHHHHHH
Q 024344 148 QATDSHSLAERARREKISERMKILQDLVPGCNKVI--GKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 148 ~~~~~H~~aER~RRekIner~~~LrsLVP~~~K~~--dKasIL~eAI~YIk~LQ~qV~ 203 (269)
.++..|+..||+||..|+++|..|+.+||..+... ..++||++|++||+.|+.+..
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 34568999999999999999999999999664322 369999999999999995433
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.31 E-value=7.6e-07 Score=93.91 Aligned_cols=66 Identities=30% Similarity=0.541 Sum_probs=55.7
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024344 147 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV 212 (269)
Q Consensus 147 ~~~~~~H~~aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~l 212 (269)
+.++.+||++|++-|..|||+|..|++|||+..-+..|..+|..||+||++|+...+.|...+..+
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 456789999999999999999999999999886555999999999999999997666555444433
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.24 E-value=1.3e-06 Score=91.54 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=47.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 024344 150 TDSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQ 201 (269)
Q Consensus 150 ~~~H~~aER~RRekIner~~~LrsLVP~~~---K~~dKasIL~eAI~YIk~LQ~q 201 (269)
+.+|+.+||+||+++|.-|.+|.+|||.|. .++||.+||.+||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 458999999999999999999999999996 4459999999999999999874
No 10
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.11 E-value=9.1e-06 Score=64.50 Aligned_cols=54 Identities=35% Similarity=0.540 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 161 REKISERMKILQDLVPGC------NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 161 RekIner~~~LrsLVP~~------~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
-+.|++.+..||.|+|.. .+. .-+-||+|+++||+.|+++|..|.+.+.+|...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999954 234 677899999999999999999999999887654
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.61 E-value=0.00015 Score=67.54 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=48.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024344 153 HSLAERARREKISERMKILQDLV-PGCNKVIGKALVLDEIINYIQSLQRQVEFLSMK 208 (269)
Q Consensus 153 H~~aER~RRekIner~~~LrsLV-P~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~ 208 (269)
-.+.||+|=.|+|+.|.+|+.-- ++-++..-|+.||-.||+||..||.-++++...
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45899999999999999998754 666776799999999999999999988887653
No 12
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.42 E-value=9.4e-05 Score=70.45 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=44.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 024344 152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQV 202 (269)
Q Consensus 152 ~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV 202 (269)
--|..||+|=.-||-.|..|+.|+|.- .|. +||.||+.+.+||.+|+.+.
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999999954 465 99999999999999998543
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.30 E-value=0.00022 Score=64.21 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=48.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024344 152 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSMK 208 (269)
Q Consensus 152 ~H~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~ 208 (269)
.++..||.|=..+|..|..||.+||.. .|+..|+.+|.-||.||++|+.-++.-...
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 467789999999999999999999943 455699999999999999999877766543
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.16 E-value=0.00042 Score=69.74 Aligned_cols=55 Identities=27% Similarity=0.247 Sum_probs=46.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024344 151 DSHSLAERARREKISERMKILQDLVPG---CNKVIGKALVLDEIINYIQSLQRQVEFL 205 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLVP~---~~K~~dKasIL~eAI~YIk~LQ~qV~~L 205 (269)
...++.||-|=..||+.|++|..+.-- ..|..-|.-||..||.-|-.|++||.+-
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999988642 3344479999999999999999999863
No 15
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=94.50 E-value=0.013 Score=61.38 Aligned_cols=96 Identities=21% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHhcCCCCCCC----CChhhHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccC
Q 024344 148 QATDSHSLAERARREKISERMKILQDLVPGCNKV----IGKALVLDEIINYIQSLQ-------RQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 148 ~~~~~H~~aER~RRekIner~~~LrsLVP~~~K~----~dKasIL~eAI~YIk~LQ-------~qV~~Le~~~e~ln~~l 216 (269)
.....|+.+|.+||++|.-.|..|.+++.+...+ +.++.-++..++||..++ ++...|.++.+.+|.-+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~~ 729 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAVI 729 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHHH
Confidence 3456899999999999999999999999866443 255666999999998877 45556778888888888
Q ss_pred CCCcccCCCCCCCc--cccCCCCCccccc
Q 024344 217 NPGIEVFPPKDFTQ--QTFDTAGMPFVSQ 243 (269)
Q Consensus 217 ~~~~~~~p~~~~~q--~~~~~~g~~f~~q 243 (269)
+.+.+..+...+.. ..|++.+..|..-
T Consensus 730 ~~~~q~p~aT~vp~~r~r~~hm~~~~~~~ 758 (856)
T KOG3582|consen 730 SACQQPPPATGVPGTRLRFDHMGDMFDSY 758 (856)
T ss_pred HHhhcCCCccCCcchhhhHHhhhhhhhhc
Confidence 77777777776553 4555555555443
No 16
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=93.97 E-value=0.03 Score=49.16 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=44.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHH
Q 024344 151 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQ 201 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~q 201 (269)
.-|++.||+|-..+|+.|..||.+||.. .|. +|.-.|+-|-.||-+|=.-
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhhc
Confidence 4699999999999999999999999965 555 8999999999999998643
No 17
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=89.48 E-value=0.97 Score=42.02 Aligned_cols=48 Identities=25% Similarity=0.427 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHH
Q 024344 152 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQR 200 (269)
Q Consensus 152 ~H~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~ 200 (269)
.-|..||.|=-.+|+-|..||.+||.. .|+ .|+..|.-|-+||..|++
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 457889999999999999999999943 344 899999999999999884
No 18
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=85.29 E-value=0.69 Score=48.82 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHH
Q 024344 155 LAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL 198 (269)
Q Consensus 155 ~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~L 198 (269)
-+.|.||.|-|+-|.+|..+||-- .-..|||+|+--||-|++-=
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlr 98 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLR 98 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHH
Confidence 578999999999999999999932 22249999999999998743
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=80.26 E-value=1.9 Score=43.50 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHH
Q 024344 155 LAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQ 199 (269)
Q Consensus 155 ~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ 199 (269)
.+.|.||++-|-.|.+|..|+|-. ..+.||++|+.-+..|||.-.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 567999999999999999999943 223599999999999998644
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=76.85 E-value=3.4 Score=39.11 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 024344 152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQV 202 (269)
Q Consensus 152 ~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV 202 (269)
.-+..||+|=..+|..|..|+..||.. .+..+|-..|+.|-.||--|-...
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 457899999999999999999999965 333478889999999998776544
No 21
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=74.11 E-value=2.6 Score=43.77 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhcCCC----CCCCCChhhHHHHHHHHHHH
Q 024344 158 RARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQS 197 (269)
Q Consensus 158 R~RRekIner~~~LrsLVP~----~~K~~dKasIL~eAI~YIk~ 197 (269)
++-|+|+|--+..|.+|+|- .+|. ||.+||.=+|.|++-
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV 76 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence 34589999999999999993 3676 999999999999863
No 22
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.62 E-value=21 Score=28.26 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 188 LDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 188 L~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
++.||+-|.-||.+|++|+.+...+...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999987766654
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=54.48 E-value=9.2 Score=33.91 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC-CChhhHHHHHHHHHHHHH
Q 024344 156 AERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQ 199 (269)
Q Consensus 156 aER~RRekIner~~~LrsLVP~~~K~-~dKasIL~eAI~YIk~LQ 199 (269)
.||.|..++++.+..|+.|+|+..-. +.+.-.|.-+-+||.+|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 68999999999999999999987421 122222555556666554
No 24
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.51 E-value=22 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024344 188 LDEIINYIQSLQRQVEFLSMKLEAV 212 (269)
Q Consensus 188 L~eAI~YIk~LQ~qV~~Le~~~e~l 212 (269)
++.||+-|.-||.+|++|+.+...+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 5678999999999999988776533
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.56 E-value=31 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024344 188 LDEIINYIQSLQRQVEFLSMKLEAVN 213 (269)
Q Consensus 188 L~eAI~YIk~LQ~qV~~Le~~~e~ln 213 (269)
+..||+-|..||.+|+.|+.+...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56899999999999999998755443
No 26
>smart00338 BRLZ basic region leucin zipper.
Probab=45.72 E-value=22 Score=25.83 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q 024344 192 INYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 192 I~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
-.||..|+.+|+.|+.+++.|...+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEI 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666555543
No 27
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.51 E-value=38 Score=24.74 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024344 158 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 206 (269)
Q Consensus 158 R~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le 206 (269)
|.-|-.+..++.++..++--.. .++|.+||+.+-.+++.++
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~--------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGK--------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH
Confidence 5567778888999888875332 3589999999999888874
No 28
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=39.18 E-value=67 Score=31.04 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 024344 166 ERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 204 (269)
Q Consensus 166 er~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~ 204 (269)
+.+.+|..|==.-.+..+.|.=|++=|.|+|+|=.+|..
T Consensus 252 ~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443222223346777788888888877665543
No 29
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=38.96 E-value=59 Score=23.20 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 184 KALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 184 KasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
-...-..+-.||+.|..++..+..+++.+..+
T Consensus 14 lv~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 14 LVAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556788899999999999999999988765
No 30
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=35.99 E-value=14 Score=39.66 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=49.2
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024344 149 ATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEA 211 (269)
Q Consensus 149 ~~~~H~~aER~RRekIner~~~LrsLVP~~----~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ 211 (269)
....|.-++|++|-.+.++|..|-.|+|.. .+...+++||. +-|+.++..-+.+.++.+.
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 345688899999999999999999999944 44568999999 8899999888877766554
No 31
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=35.01 E-value=84 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344 187 VLDEIINYIQSLQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 187 IL~eAI~YIk~LQ~qV~~Le~~~e~ln~ 214 (269)
=+.++-+=|+.|...|..|+|++.+...
T Consensus 67 eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 67 EVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577778889999999999999987543
No 32
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.37 E-value=42 Score=24.29 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024344 157 ERARREKISERMKILQ 172 (269)
Q Consensus 157 ER~RRekIner~~~Lr 172 (269)
-|+=|.+-...+..|.
T Consensus 17 Ar~~R~RKk~~~~~Le 32 (64)
T PF00170_consen 17 ARRSRQRKKQYIEELE 32 (64)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 3333444444444444
No 33
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.07 E-value=2.2e+02 Score=24.45 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024344 155 LAERARREKISERMKILQDLVPGCNKVIGKALV-LDEIINYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 155 ~aER~RRekIner~~~LrsLVP~~~K~~dKasI-L~eAI~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
...+..|.++......|+.-...... ..... .+..++++..|+..|+.|+.+++.+..++
T Consensus 115 ~~~k~~r~k~~~~~~~l~~~~~~~~~--P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 115 YRVKKERDKLRKQNKKLRQQGGLLGV--PALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666777777777654433222 23332 67899999999999999999988877654
No 34
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.73 E-value=86 Score=23.43 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344 156 AERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 156 aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~ 214 (269)
+|-+-+..|.+.+...+. .+ ..-..-|+++=...+.|..+|+.|+.+++.+.+
T Consensus 8 ~EirakQ~~~eEL~kvk~----~n--~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKS----AN--LAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355556666665555443 11 134556999999999999999999999988764
No 35
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=33.65 E-value=1.5e+02 Score=24.03 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCCCCCCChhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhccC
Q 024344 164 ISERMKILQDLVPGCNKVIGKALVLDE-----------IINYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 164 Iner~~~LrsLVP~~~K~~dKasIL~e-----------AI~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
...-++.|+.+-|.-... --.+|+-| .+..|..||.+++.++.++..+..+|
T Consensus 39 ~sni~k~L~~~~~~~R~~-a~~Sl~yEA~~R~~dPv~Gc~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 39 VSNISKMLQELPPEQRED-AMRSLVYEANARARDPVYGCVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred hhHHHHHHHhCCccchhh-HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345567788875544322 23344443 47889999999999999998877653
No 36
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.62 E-value=2.2e+02 Score=21.92 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcC---CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 164 ISERMKILQDLV---PGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 164 Iner~~~LrsLV---P~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
|+-+|...+++| |+...- +++--++|+.|+++++....-+..+..+
T Consensus 33 lk~Klq~ar~~i~~lpgi~~s------~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 33 LKHKLQKARAAIRELPGIDRS------VEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHhCCCccCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444 654433 5677889999999998888776665544
No 37
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=32.17 E-value=1.2e+02 Score=26.89 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccCC
Q 024344 162 EKISERMKILQDLVPGCNKVI-GKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFP 224 (269)
Q Consensus 162 ekIner~~~LrsLVP~~~K~~-dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~l~~~~~~~p 224 (269)
+.|.+++...-+=+|...-+. .-.-+++.+-+-|..|...++.|.+.++.+.+.+++....+|
T Consensus 47 d~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~ 110 (157)
T COG3352 47 DAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTP 110 (157)
T ss_pred HHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhH
Confidence 356666666666666443221 233457777788888888888888888888888877555444
No 38
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.42 E-value=5.9e+02 Score=26.35 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=37.9
Q ss_pred cchHHHH-HHHHHHHHHHHHHhcCCCCCCCCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024344 153 HSLAERA-RREKISERMKILQDLVPGCNKVIGKA---LVLDEIINYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 153 H~~aER~-RRekIner~~~LrsLVP~~~K~~dKa---sIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
+.+.|.. +...+..+|..|+. +.. ..+.+.-.-|+.|+.+++.|+.+++.+....
T Consensus 69 SALteqQ~kasELEKqLaaLrq---------Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRR---------ELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 5577777 78888888888863 222 3445556667788888888888876655543
No 39
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.37 E-value=87 Score=22.44 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 024344 195 IQSLQRQVEFLSMKLEAVNTRMN 217 (269)
Q Consensus 195 Ik~LQ~qV~~Le~~~e~ln~~l~ 217 (269)
|..|++||+.|+.++..|...+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766655443
No 40
>PRK00846 hypothetical protein; Provisional
Probab=25.13 E-value=3.4e+02 Score=21.23 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHH----HHHHHHHHHHHHHHHHHHHhhccC
Q 024344 160 RREKISERMKILQDLVPGCNKVIGKALVLDEII----NYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 160 RRekIner~~~LrsLVP~~~K~~dKasIL~eAI----~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
|-+.|.+++..|..-|---. +.+.-|.++| .-|..|+++++.|..++.++....
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe---~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 7 RDQALEARLVELETRLSFQE---QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45677888888875332110 2222222222 235556677777777777766543
No 41
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.20 E-value=1.5e+02 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024344 184 KALVLDEIINYIQSLQRQVEFLSMKLEAVN 213 (269)
Q Consensus 184 KasIL~eAI~YIk~LQ~qV~~Le~~~e~ln 213 (269)
-+.=|..|+.-|..|+.+++.|..+++...
T Consensus 38 ~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 38 AERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344488999999999999999998876543
No 42
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.56 E-value=2.8e+02 Score=27.05 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHH---------hcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 160 RREKISERMKILQ---------DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 160 RRekIner~~~Lr---------sLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
|...++.....|. ++.|...+. .=+.+|.++-+-.+.|+.+|+.|..++.++.-.
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~~~~-~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEKENK-NLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCcccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3456666666665 223333333 567789999999999999999999888766554
No 43
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=22.43 E-value=3.2e+02 Score=20.01 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024344 155 LAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 155 ~aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
-.|++=|+.....+.+| . +++..++.++-.-|......++.|.++++.+....
T Consensus 11 ~~E~ki~~Gae~m~~~~--------~-t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 11 DKELKIKEGAENMLQAY--------S-TDKKKVLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHH--------C-CHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHH--------c-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555544444 1 25555788888888888888888888888877653
No 44
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=21.80 E-value=66 Score=28.11 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHH
Q 024344 163 KISERMKILQDLVPGCNKVIGKALVLDEIINYIQSL 198 (269)
Q Consensus 163 kIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~L 198 (269)
-|-+||..|++|||..... .-.++..-+..++|.+
T Consensus 50 Tl~ERi~ALkDm~Pp~~R~-~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 50 TFTDRIYALKDIVPPTTRG-WIYHKYSTTTNFVKST 84 (145)
T ss_pred cHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 5778899999999965332 2223334444444443
No 45
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.30 E-value=1e+02 Score=21.65 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 024344 196 QSLQRQVEFLSMKLE 210 (269)
Q Consensus 196 k~LQ~qV~~Le~~~e 210 (269)
..|+.++..|..++.
T Consensus 35 ~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 35 QELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 46
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=21.02 E-value=2.8e+02 Score=20.56 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHH
Q 024344 161 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSL 198 (269)
Q Consensus 161 RekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~L 198 (269)
-+.|++++..++.-.|.... .++.+| -|+++...|
T Consensus 27 a~~i~~~i~~~~~~~~~~~~--~~~~vl-aaLnla~e~ 61 (89)
T PF05164_consen 27 AELINEKINEIKKKYPKLSP--ERLAVL-AALNLADEL 61 (89)
T ss_dssp HHHHHHHHHHHCTTCCTSSH--HHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCH--HHHHHH-HHHHHHHHH
Confidence 46899999999999886554 466654 455554444
No 47
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.64 E-value=1.6e+02 Score=23.13 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 187 VLDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 187 IL~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
+|++..+.-..|++++++|+.++..+.+.
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777888889999999998888876664
No 48
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=20.37 E-value=1.2e+02 Score=30.39 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.0
Q ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHhhc
Q 024344 188 LDEIINYIQS-------------LQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 188 L~eAI~YIk~-------------LQ~qV~~Le~~~e~ln~ 214 (269)
++.||+|+++ ||.|+.+++.++|+.+.
T Consensus 289 ~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRl 328 (398)
T KOG0139|consen 289 FDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARL 328 (398)
T ss_pred HHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999876 88999999999987655
No 49
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=20.04 E-value=82 Score=27.09 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.2
Q ss_pred ChhhHHHHHHHHHHHHHHHH
Q 024344 183 GKALVLDEIINYIQSLQRQV 202 (269)
Q Consensus 183 dKasIL~eAI~YIk~LQ~qV 202 (269)
--..+++.|.+||.+|+.|+
T Consensus 120 yEgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 120 YEGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred chhhHHHHHHHHHHHHHhhc
Confidence 36778999999999999875
Done!