Query 024344
Match_columns 269
No_of_seqs 239 out of 1075
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 3.8E-18 1.3E-22 130.9 4.7 68 149-216 6-73 (82)
2 4ati_A MITF, microphthalmia-as 99.7 3.5E-17 1.2E-21 133.6 7.8 71 138-208 16-89 (118)
3 4h10_B Circadian locomoter out 99.6 3.1E-16 1.1E-20 118.3 4.3 60 147-206 6-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.6 1.7E-16 5.8E-21 116.7 1.7 55 149-203 2-62 (63)
5 1an4_A Protein (upstream stimu 99.6 3.6E-16 1.2E-20 114.4 2.9 56 148-203 4-64 (65)
6 1hlo_A Protein (transcription 99.6 2E-15 6.8E-20 114.8 6.4 65 149-214 12-78 (80)
7 1nkp_B MAX protein, MYC proto- 99.6 4.2E-15 1.4E-19 113.5 7.2 63 151-214 4-68 (83)
8 1nkp_A C-MYC, MYC proto-oncoge 99.5 1.2E-14 4.2E-19 113.0 7.2 62 151-213 8-72 (88)
9 4h10_A ARYL hydrocarbon recept 99.5 1.7E-15 5.8E-20 114.6 1.3 54 146-200 6-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.4 1.4E-13 4.7E-18 105.5 7.3 63 151-214 3-68 (80)
11 3u5v_A Protein MAX, transcript 99.4 4.2E-14 1.5E-18 107.6 4.3 57 150-206 6-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.1 6.6E-11 2.3E-15 88.3 5.3 53 151-203 14-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 1.9E-10 6.5E-15 83.8 6.0 52 152-203 5-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 4.2E-10 1.4E-14 103.9 6.3 55 146-201 9-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 6.5E-10 2.2E-14 104.0 3.7 54 146-200 10-67 (387)
16 4ath_A MITF, microphthalmia-as 98.8 1.3E-08 4.4E-13 78.8 7.2 47 161-207 4-53 (83)
17 2lfh_A DNA-binding protein inh 98.6 1E-08 3.5E-13 76.8 2.4 47 154-200 19-67 (68)
18 4aya_A DNA-binding protein inh 98.1 5.3E-06 1.8E-10 65.9 6.9 48 157-204 33-82 (97)
19 2wt7_A Proto-oncogene protein 72.3 4.9 0.00017 28.6 4.3 45 157-215 1-45 (63)
20 1zme_C Proline utilization tra 69.7 3.6 0.00012 28.6 3.1 25 192-216 43-67 (70)
21 1pyi_A Protein (pyrimidine pat 65.0 11 0.00039 27.6 5.2 27 192-218 47-73 (96)
22 2jee_A YIIU; FTSZ, septum, coi 58.6 12 0.0004 28.6 4.2 27 188-214 15-41 (81)
23 2er8_A Regulatory protein Leu3 54.7 7.5 0.00026 27.2 2.5 22 192-213 48-69 (72)
24 2wuj_A Septum site-determining 52.1 16 0.00055 25.5 3.8 30 186-215 27-56 (57)
25 2oqq_A Transcription factor HY 51.9 9.8 0.00033 25.7 2.5 25 193-217 3-27 (42)
26 1dh3_A Transcription factor CR 50.1 11 0.00037 26.3 2.7 25 193-217 22-46 (55)
27 3muj_A Transcription factor CO 45.0 30 0.001 28.7 5.0 36 163-198 95-133 (138)
28 1hwt_C Protein (heme activator 41.7 10 0.00035 27.0 1.5 22 192-213 57-78 (81)
29 2dgc_A Protein (GCN4); basic d 39.8 19 0.00065 25.7 2.7 24 192-215 29-52 (63)
30 1gd2_E Transcription factor PA 39.5 26 0.00089 25.7 3.4 15 195-209 52-66 (70)
31 3coq_A Regulatory protein GAL4 38.0 32 0.0011 24.6 3.7 24 192-215 44-67 (89)
32 1jnm_A Proto-oncogene C-JUN; B 37.1 22 0.00077 24.9 2.7 23 192-214 21-43 (62)
33 2l5g_A GPS2 protein, G protein 36.2 77 0.0026 20.9 4.8 31 182-212 4-34 (38)
34 1t2k_D Cyclic-AMP-dependent tr 34.9 26 0.00088 24.4 2.7 22 193-214 22-43 (61)
35 2ke4_A CDC42-interacting prote 31.1 93 0.0032 24.0 5.5 64 151-215 8-91 (98)
36 1t3u_A Conserved hypothetical 30.0 1.5E+02 0.005 22.3 6.5 25 161-187 32-56 (104)
37 3he4_B Synzip5; heterodimeric 28.3 88 0.003 20.9 4.2 23 188-210 5-27 (46)
38 1xkm_B Distinctin chain B; por 27.0 70 0.0024 19.1 3.1 19 185-203 3-21 (26)
39 3fx7_A Putative uncharacterize 25.4 1.9E+02 0.0064 22.4 6.3 22 188-209 65-86 (94)
40 2fhx_A SPM-1; metallo-beta-lac 23.0 39 0.0013 27.8 2.2 30 173-203 216-245 (246)
41 3qne_A Seryl-tRNA synthetase, 21.4 1.9E+02 0.0064 28.2 6.9 27 190-216 75-101 (485)
42 2jqq_A Conserved oligomeric go 21.4 48 0.0017 29.1 2.5 43 161-205 53-95 (204)
43 1m2x_A Class B carbapenemase B 21.4 23 0.00079 29.0 0.4 31 173-204 191-221 (223)
44 3nmd_A CGMP dependent protein 21.2 43 0.0015 24.9 1.8 29 195-223 42-70 (72)
45 1a7t_A Metallo-beta-lactamase; 21.1 70 0.0024 26.3 3.3 31 172-203 200-230 (232)
46 1p3q_Q VPS9P, vacuolar protein 20.0 82 0.0028 22.1 3.0 26 155-180 3-28 (54)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.71 E-value=3.8e-18 Score=130.92 Aligned_cols=68 Identities=28% Similarity=0.405 Sum_probs=61.8
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024344 149 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 149 ~~~~H~~aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
.+.+|+++||+||++||++|..|++|||+++..++|++||.+||+||++||.+++.|+.+++.|...+
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999854459999999999999999999999999998887654
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.69 E-value=3.5e-17 Score=133.55 Aligned_cols=71 Identities=32% Similarity=0.451 Sum_probs=50.9
Q ss_pred cccccccccCCCCCccchHHHHHHHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024344 138 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSMK 208 (269)
Q Consensus 138 d~~~~r~rr~~~~~~H~~aER~RRekIner~~~LrsLVP~~~K---~~dKasIL~eAI~YIk~LQ~qV~~Le~~ 208 (269)
+..+..+++.+++.+|+++||+||++||++|.+|++|||.|.+ .++|++||++||+||++||.+++.|+..
T Consensus 16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788889999999999999999999999999999853 2489999999999999999999999854
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=118.26 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=53.4
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024344 147 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 206 (269)
Q Consensus 147 ~~~~~~H~~aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le 206 (269)
.+.+.+|+++||+||++||++|.+|++|||++...+||++||+.||+||++||.++..|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344568999999999999999999999999875444999999999999999999998775
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=1.7e-16 Score=116.71 Aligned_cols=55 Identities=31% Similarity=0.447 Sum_probs=48.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhcCCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 024344 149 ATDSHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 149 ~~~~H~~aER~RRekIner~~~LrsLVP~~~K------~~dKasIL~eAI~YIk~LQ~qV~ 203 (269)
++++|+++||+||++||+.|..|++|||.+.+ ..+||+||+.||+||++||++|+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999999997632 23799999999999999998763
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=3.6e-16 Score=114.42 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=49.8
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHhcCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 024344 148 QATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 148 ~~~~~H~~aER~RRekIner~~~LrsLVP~~~K-----~~dKasIL~eAI~YIk~LQ~qV~ 203 (269)
..+.+|+.+||+||++||+.|..|++|||.|.. .++|++||.+||+||++||.+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999862 24999999999999999997653
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=2e-15 Score=114.83 Aligned_cols=65 Identities=28% Similarity=0.483 Sum_probs=59.3
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344 149 ATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 149 ~~~~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~ 214 (269)
.+.+|+..||+||..||+.|..|++|||.+ .|+ +|++||..||+||+.|+.+++.|+.+++.|..
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999999999999999999987 354 99999999999999999999999999988764
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.57 E-value=4.2e-15 Score=113.50 Aligned_cols=63 Identities=29% Similarity=0.502 Sum_probs=56.1
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344 151 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~ 214 (269)
.+|+..||+||.+||+.|..|+++||.+ .|+ +|++||..||+||++|+.+++.|+.+++.+..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999986 454 99999999999999999888888877766654
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=1.2e-14 Score=113.01 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=53.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024344 151 DSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 213 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLVP~~~---K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln 213 (269)
.+|+..||+||.+||++|..|+++||.+. |. +|++||.+||+||++|+.+.+.|...++.+.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999763 55 9999999999999999988887665554443
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=1.7e-15 Score=114.57 Aligned_cols=54 Identities=31% Similarity=0.509 Sum_probs=48.0
Q ss_pred cCCCCCccchHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHHH
Q 024344 146 RGQATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR 200 (269)
Q Consensus 146 r~~~~~~H~~aER~RRekIner~~~LrsLVP~~----~K~~dKasIL~eAI~YIk~LQ~ 200 (269)
..+++.+|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 344556899999999999999999999999987 455 999999999999999973
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.4e-13 Score=105.52 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=55.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344 151 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~ 214 (269)
..|+..||+||..||+.|..|+++||.+ .|. +|+.||..||+||+.|+.+.+.|..+++.+..
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999965 344 89999999999999999988888777766554
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.45 E-value=4.2e-14 Score=107.59 Aligned_cols=57 Identities=28% Similarity=0.372 Sum_probs=48.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024344 150 TDSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLS 206 (269)
Q Consensus 150 ~~~H~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~qV~~Le 206 (269)
+.+|+..||+||..||+.|..|+.+||.+ .|..+|+.||..||+||++||++|++++
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999953 3433799999999999999999999875
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.11 E-value=6.6e-11 Score=88.26 Aligned_cols=53 Identities=26% Similarity=0.418 Sum_probs=47.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCC-CCCCChhhHHHHHHHHHHHHHHHHH
Q 024344 151 DSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLVP~~-~K~~dKasIL~eAI~YIk~LQ~qV~ 203 (269)
..|+..||+|+..||+.|..|+++||.. ++..+|+.||..||+||..|+..++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999999999999965 3445999999999999999997653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.07 E-value=1.9e-10 Score=83.77 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 024344 152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 152 ~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~ 203 (269)
.|+..||.|+..||+.|..|+.+||.. +++.+|+.||..||+||..|+..++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999965 3445999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=4.2e-10 Score=103.91 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=41.3
Q ss_pred cCCCCCccchHHHHHHHHHHHHHHHHHhcCCCC-CCCCChhhHHHHHHHHHHHHHHH
Q 024344 146 RGQATDSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQ 201 (269)
Q Consensus 146 r~~~~~~H~~aER~RRekIner~~~LrsLVP~~-~K~~dKasIL~eAI~YIk~LQ~q 201 (269)
...++.+|+.+||+||++||+.|.+|+.|||.. .|+ ||++||..||+||+.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence 344566899999999999999999999999944 455 9999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=6.5e-10 Score=104.02 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=47.6
Q ss_pred cCCCCCccchHHHHHHHHHHHHHHHHHhcCCC----CCCCCChhhHHHHHHHHHHHHHH
Q 024344 146 RGQATDSHSLAERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQSLQR 200 (269)
Q Consensus 146 r~~~~~~H~~aER~RRekIner~~~LrsLVP~----~~K~~dKasIL~eAI~YIk~LQ~ 200 (269)
.+.++.+|+.+||+||++||+.|.+|+.|||. ..|+ ||++||..||+|||.|+.
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhc
Confidence 34556789999999999999999999999994 4566 999999999999999984
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.78 E-value=1.3e-08 Score=78.84 Aligned_cols=47 Identities=32% Similarity=0.479 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024344 161 REKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSM 207 (269)
Q Consensus 161 RekIner~~~LrsLVP~~~K---~~dKasIL~eAI~YIk~LQ~qV~~Le~ 207 (269)
|..||++|.+|..|||.++. ..+|++||..||+||++||.+++.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998742 239999999999999999987776653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.63 E-value=1e-08 Score=76.76 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 024344 154 SLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR 200 (269)
Q Consensus 154 ~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~ 200 (269)
+-.||+|...||+.|..||.+||.. +++.+|+.||..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3568888999999999999999965 3445999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.12 E-value=5.3e-06 Score=65.87 Aligned_cols=48 Identities=27% Similarity=0.414 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHH
Q 024344 157 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEF 204 (269)
Q Consensus 157 ER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~~ 204 (269)
||.|=..||+.|..||.+||.. +++.+|..+|.-||+||..|+..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999965 44559999999999999999987754
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.29 E-value=4.9 Score=28.60 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 157 ERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 157 ER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
||++|.+..+++.+.++ .. .-.+||..|+.+|+.|+.....|...
T Consensus 1 Ekr~rrrerNR~AA~rc------R~--------rKk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC------RN--------RRRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp CHHHHHHHHHHHHHHHH------HH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH------HH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777774 11 34566666776666666666555543
No 20
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=69.73 E-value=3.6 Score=28.62 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q 024344 192 INYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 192 I~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
-.||..|+.+|+.|+..+..|...|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999988887754
No 21
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=65.04 E-value=11 Score=27.59 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC
Q 024344 192 INYIQSLQRQVEFLSMKLEAVNTRMNP 218 (269)
Q Consensus 192 I~YIk~LQ~qV~~Le~~~e~ln~~l~~ 218 (269)
..||..|+.+|+.|+..+..+......
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~~~~ 73 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVDPTK 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 359999999999999999887765543
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.58 E-value=12 Score=28.56 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344 188 LDEIINYIQSLQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 188 L~eAI~YIk~LQ~qV~~Le~~~e~ln~ 214 (269)
++.||+-|.-||.+|++|+.+...++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988776554
No 23
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=54.65 E-value=7.5 Score=27.20 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024344 192 INYIQSLQRQVEFLSMKLEAVN 213 (269)
Q Consensus 192 I~YIk~LQ~qV~~Le~~~e~ln 213 (269)
-.||..|+.+|+.|+..++.+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887654
No 24
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=52.08 E-value=16 Score=25.49 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 186 LVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 186 sIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
..|+..++-+..|..++..|+.+++.++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 358999999999999999999998877654
No 25
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=51.85 E-value=9.8 Score=25.74 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 024344 193 NYIQSLQRQVEFLSMKLEAVNTRMN 217 (269)
Q Consensus 193 ~YIk~LQ~qV~~Le~~~e~ln~~l~ 217 (269)
.|+-.|+.+++.|+....+|+.+++
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888888888888877777654
No 26
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=50.07 E-value=11 Score=26.28 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 024344 193 NYIQSLQRQVEFLSMKLEAVNTRMN 217 (269)
Q Consensus 193 ~YIk~LQ~qV~~Le~~~e~ln~~l~ 217 (269)
.||..|+.+|..|+.+...|...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888877776665543
No 27
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=45.03 E-value=30 Score=28.72 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHH
Q 024344 163 KISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL 198 (269)
Q Consensus 163 kIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~L 198 (269)
-|.-.|.-|+.+||.. ....-|-.||..|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5888999999999844 23347999999999998876
No 28
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=41.70 E-value=10 Score=26.97 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024344 192 INYIQSLQRQVEFLSMKLEAVN 213 (269)
Q Consensus 192 I~YIk~LQ~qV~~Le~~~e~ln 213 (269)
-.||..|+.+|..|+..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999988776554
No 29
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=39.81 E-value=19 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 192 INYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 192 I~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
..||..|+.+|+.|+.+...|...
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666555543
No 30
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.47 E-value=26 Score=25.73 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024344 195 IQSLQRQVEFLSMKL 209 (269)
Q Consensus 195 Ik~LQ~qV~~Le~~~ 209 (269)
+..|+.+|..|..++
T Consensus 52 n~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 52 NDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 31
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=38.02 E-value=32 Score=24.58 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 024344 192 INYIQSLQRQVEFLSMKLEAVNTR 215 (269)
Q Consensus 192 I~YIk~LQ~qV~~Le~~~e~ln~~ 215 (269)
..||..|+.+|+.|+..+..+.+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~ 67 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPR 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 359999999999999988877654
No 32
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.13 E-value=22 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 024344 192 INYIQSLQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 192 I~YIk~LQ~qV~~Le~~~e~ln~ 214 (269)
.+||..|+.+|+.|+.+...|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444443
No 33
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.20 E-value=77 Score=20.89 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024344 182 IGKALVLDEIINYIQSLQRQVEFLSMKLEAV 212 (269)
Q Consensus 182 ~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~l 212 (269)
+.....|+++-+-|..|+.+++.|+.+..++
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999887665
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.87 E-value=26 Score=24.43 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 024344 193 NYIQSLQRQVEFLSMKLEAVNT 214 (269)
Q Consensus 193 ~YIk~LQ~qV~~Le~~~e~ln~ 214 (269)
.||..|+.+|+.|+.+...|..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444433
No 35
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.07 E-value=93 Score=24.01 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=41.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcC--------------------CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024344 151 DSHSLAERARREKISERMKILQDLV--------------------PGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLE 210 (269)
Q Consensus 151 ~~H~~aER~RRekIner~~~LrsLV--------------------P~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e 210 (269)
.+|..-||+ |.+|..++..|+.=| |.......-..-|.++..-|..|+..+..++.-+.
T Consensus 8 ~s~LPpeqR-kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 8 FSHLPPEQQ-RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666664 346666666665433 22222223345588888899999999999998888
Q ss_pred Hhhcc
Q 024344 211 AVNTR 215 (269)
Q Consensus 211 ~ln~~ 215 (269)
+++.+
T Consensus 87 e~e~~ 91 (98)
T 2ke4_A 87 EAESR 91 (98)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 87654
No 36
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=30.03 E-value=1.5e+02 Score=22.27 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChhhH
Q 024344 161 REKISERMKILQDLVPGCNKVIGKALV 187 (269)
Q Consensus 161 RekIner~~~LrsLVP~~~K~~dKasI 187 (269)
-..|+++|..|+.-.|..+. .+..|
T Consensus 32 A~~vd~~~~~i~~~~~~~~~--~r~~v 56 (104)
T 1t3u_A 32 ARYLDGKMREIRSSGKVIGA--DRVAV 56 (104)
T ss_dssp HHHHHHHHHHHHTTTCSCSH--HHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCH--HHHHH
Confidence 45899999999998886654 35444
No 37
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=28.34 E-value=88 Score=20.89 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024344 188 LDEIINYIQSLQRQVEFLSMKLE 210 (269)
Q Consensus 188 L~eAI~YIk~LQ~qV~~Le~~~e 210 (269)
+.+--+||+.|+++..+|..-.+
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 45677899999987777765444
No 38
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=26.95 E-value=70 Score=19.13 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 024344 185 ALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 185 asIL~eAI~YIk~LQ~qV~ 203 (269)
.+-|-+|-.|+.+|+++++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4557788999999988765
No 39
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=25.37 E-value=1.9e+02 Score=22.42 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024344 188 LDEIINYIQSLQRQVEFLSMKL 209 (269)
Q Consensus 188 L~eAI~YIk~LQ~qV~~Le~~~ 209 (269)
.+.|=+||.+|.++++.|+...
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 4577889999999999998754
No 40
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=23.02 E-value=39 Score=27.80 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=23.4
Q ss_pred hcCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 024344 173 DLVPGCNKVIGKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 173 sLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~ 203 (269)
.++|+-....+ ...|.++++||+.|+++|+
T Consensus 216 ~i~pgHg~~~~-~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGG-PEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBS-THHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCC-HHHHHHHHHHHHHHHHHhc
Confidence 45677666544 5789999999999998874
No 41
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.44 E-value=1.9e+02 Score=28.23 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024344 190 EIINYIQSLQRQVEFLSMKLEAVNTRM 216 (269)
Q Consensus 190 eAI~YIk~LQ~qV~~Le~~~e~ln~~l 216 (269)
+.+.-++.|..+++.|+.++.++...+
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777666666555544
No 42
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.43 E-value=48 Score=29.12 Aligned_cols=43 Identities=14% Similarity=0.342 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024344 161 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 205 (269)
Q Consensus 161 RekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~L 205 (269)
|..++.-+..|+.|+-.. +...-.++.++|+|++.|-+-+..|
T Consensus 53 ~~Dl~~F~~QL~qL~~~~--i~~Tre~v~d~l~YLkkLD~l~~~L 95 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDD--ISNTQEIIKDVLEYLKKLDEIYGSL 95 (204)
T ss_dssp HHHHHHHHHHHHHHHHHS--CSTTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888876432 2267889999999999998655533
No 43
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=21.41 E-value=23 Score=28.97 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=22.7
Q ss_pred hcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 024344 173 DLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 204 (269)
Q Consensus 173 sLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~ 204 (269)
-++|+-....+ ...|..+++|++.|+++|++
T Consensus 191 ~i~pgHg~~~~-~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWKD-QRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCCS-TTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcCC-HHHHHHHHHHHHHHHHHHhc
Confidence 45677666544 56899999999999988854
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.22 E-value=43 Score=24.95 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcccC
Q 024344 195 IQSLQRQVEFLSMKLEAVNTRMNPGIEVF 223 (269)
Q Consensus 195 Ik~LQ~qV~~Le~~~e~ln~~l~~~~~~~ 223 (269)
|+.|+.++++++..+..|.+.++.....+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 66666666666666666666665433333
No 45
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=21.08 E-value=70 Score=26.26 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=23.6
Q ss_pred HhcCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 024344 172 QDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 203 (269)
Q Consensus 172 rsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~ 203 (269)
.-++|+-....+ ..+|..+++||+.|.++|.
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhc
Confidence 346687766644 4688999999999988764
No 46
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.01 E-value=82 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024344 155 LAERARREKISERMKILQDLVPGCNK 180 (269)
Q Consensus 155 ~aER~RRekIner~~~LrsLVP~~~K 180 (269)
.++|-+|...++-+..|+.+.|..++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57888999999999999999997643
Done!