BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024345
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34990|PURU_BACSU Formyltetrahydrofolate deformylase OS=Bacillus subtilis (strain
168) GN=purU PE=3 SV=2
Length = 300
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 14/174 (8%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFF 107
CPD+ GIV+ +S + G NI+ ++ + + + F+ R EF I+ + + F
Sbjct: 26 CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFA 85
Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
+++ F+ S+ ++ +VA+ SK+ HCL + ++ WQ G L EI VISNH+
Sbjct: 86 SVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEE 142
Query: 168 GPNSHVIRFLERHGIPYHYLCAKEN---EREEELLELVQ--NTDFLVLARYMQV 216
+ER IP+HY+ A ++ E E++ LEL++ + D +VLARYMQ+
Sbjct: 143 AR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYDVDVIVLARYMQI 191
>sp|Q55135|PURU_SYNY3 Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=purU PE=3 SV=1
Length = 284
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD+ GIVA++++ I GNI+ AD +F +R E+ D + R ++ + +
Sbjct: 12 CPDQPGIVAQIAQFIYQNQGNIIHADQHTDFSSGLFLNRVEWQLDNFRLSRPELLSAWSQ 71
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
L++ A + D P+ +A+ SKQ+HCL+D L+ W+ G+L EI +ISNH
Sbjct: 72 LAEQLQATWQI-HFSDQLPR--LALWVSKQDHCLLDILWRWRSGELRCEIPLIISNH--- 125
Query: 169 PNSHVIRFLERHGIPYHYL-CAKENEREEELLELV----QNTDFLVLARYMQV 216
P+ I ++ GI +H L KEN+ +E EL D +VLA+Y+Q+
Sbjct: 126 PDLKSIA--DQFGIDFHCLPITKENKLAQETAELALLKQYQIDLVVLAKYLQI 176
>sp|P0A5T6|PURU_MYCTU Formyltetrahydrofolate deformylase OS=Mycobacterium tuberculosis
GN=purU PE=3 SV=1
Length = 310
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYSRSEFIFDPIKWPREQMD 103
+ C D GI+A +S +A G NI++ D PE F R+ F + +++
Sbjct: 34 LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92
Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
DF S + + R + +VA++AS ++HCL+D L+ + G+L + + VI+
Sbjct: 93 RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150
Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQV 216
NH P+ +HV F G+P+ ++ A + R E +L L N D +VLARYMQ+
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQI 202
>sp|P0A5T7|PURU_MYCBO Formyltetrahydrofolate deformylase OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=purU PE=3 SV=1
Length = 310
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYSRSEFIFDPIKWPREQMD 103
+ C D GI+A +S +A G NI++ D PE F R+ F + +++
Sbjct: 34 LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92
Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
DF S + + R + +VA++AS ++HCL+D L+ + G+L + + VI+
Sbjct: 93 RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150
Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQV 216
NH P+ +HV F G+P+ ++ A + R E +L L N D +VLARYMQ+
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQI 202
>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase OS=Escherichia coli (strain K12)
GN=purU PE=1 SV=1
Length = 280
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD+ G++A+++ NI+ + FV + F+ R+E E F
Sbjct: 13 CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59
Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
S + + S + V +++P + ++ +L +K+ HCL D L G L VEI VI
Sbjct: 60 DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119
Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQV 216
NHD + +ER IP+ + + NE ++++ + + D++VLA+YM+V
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMRV 172
>sp|P0A441|PURU_SHIFL Formyltetrahydrofolate deformylase OS=Shigella flexneri GN=purU
PE=3 SV=1
Length = 280
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD+ G++A+++ NI+ + FV + F+ R+E E F
Sbjct: 13 CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59
Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
S + + S + V +++P + ++ +L +K+ HCL D L G L VEI VI
Sbjct: 60 DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119
Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQV 216
NHD + +ER IP+ + + NE ++++ + + D++VLA+YM+V
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMRV 172
>sp|P0A440|PURU_ECOL6 Formyltetrahydrofolate deformylase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=purU PE=3 SV=1
Length = 280
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD+ G++A+++ NI+ + FV + F+ R+E E F
Sbjct: 13 CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59
Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
S + + S + V +++P + ++ +L +K+ HCL D L G L VEI VI
Sbjct: 60 DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119
Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQV 216
NHD + +ER IP+ + + NE ++++ + + D++VLA+YM+V
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMRV 172
>sp|Q46339|PURU_CORS1 Formyltetrahydrofolate deformylase OS=Corynebacterium sp. (strain
P-1) GN=purU PE=3 SV=1
Length = 286
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 13/176 (7%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
CP+ +GIV ++ + I+ + + R +F D + + +
Sbjct: 10 TLQCPEGIGIVHAVTGFLVRHQRTIVELKQYDDMSAGRLFLRVDFAGDSAPDLLDALRSE 69
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
F +++ F+ M +R + K KV ++ SK EHCL D L+ G LP+E+ V SNH
Sbjct: 70 FSEVAAKFD-MDWQLR--ERGQKTKVLIMVSKFEHCLQDLLFRMHSGDLPIEVVGVASNH 126
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQNT--DFLVLARYMQV 216
P+ + +E +GI +H++ ++ + E LLEL+ T + +VLARYMQV
Sbjct: 127 ---PDHRSL--VEWYGIGFHHIPISKDTKPRAEAALLELIDQTGAELVVLARYMQV 177
>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purU PE=3
SV=2
Length = 278
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
CPD+ G++AK++ NIL + FV + F+ R+E IF+ + ED
Sbjct: 11 CPDDKGLIAKITNICYKHQLNILHNNEFVDFETKHFFMRTELEGIFN-----EATLLEDL 65
Query: 107 -FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
+ L + N R+ K ++ +L +K+ HCL D L G L VEI VI NH
Sbjct: 66 KYSLPEETNC-----RLIGTQRK-RIVILVTKEAHCLGDILMKNYYGALDVEIAAVIGNH 119
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ--NTDFLVLARYMQV 216
D ++ +ER IP+H L + EN E ++ L E + D++VLA+YM+V
Sbjct: 120 D-----NLRELVERFNIPFH-LVSHENLTRVEHDKLLAEKIDEYTPDYIVLAKYMRV 170
>sp|Q7NV65|HEMH_CHRVO Ferrochelatase OS=Chromobacterium violaceum (strain ATCC 12472 /
DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=hemH PE=3 SV=1
Length = 364
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Query: 102 MDEDFFKLSKMFN--AMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEIT 159
+DE F LS++ N +R+V D DP Y A+ A ++H WQ G+ P ++
Sbjct: 159 LDEAFRVLSRLRNMPEVRTVRHFHD-DPGYIAALAAQIRKH--------WQYGQRPDKL- 208
Query: 160 CVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL-ARYMQVNR 218
V+S H V RF G PYH C K E L+L + + +R+ +
Sbjct: 209 -VMSFHG------VPRFTRDKGDPYHCECQKTGRLLAEALQLRPDQYVISFQSRFGRTEW 261
Query: 219 IRLYVAQLFSCL 230
++ Y +++ L
Sbjct: 262 LKPYTSEVLEAL 273
>sp|C6C0A9|CARA_DESAD Carbamoyl-phosphate synthase small chain OS=Desulfovibrio
salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 /
VKM B-1763) GN=carA PE=3 SV=1
Length = 374
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 111 KMFNAMRSVVRVPDIDPKYKVA---VLASKQEHCLVDFL-----YGWQEGK-LPVEITCV 161
++ AMR ++ ++DP+ VA L + + L D + Y WQ+GK +PV+++
Sbjct: 121 RINGAMRGIISTEELDPEKLVAKAKQLPTMEGQNLADTVTSETCYAWQDGKPVPVDVSSG 180
Query: 162 ISNHDRGP---------NSHVIRFLERHG-----IPYHYLCAKENEREEELLELVQN-TD 206
D+GP +++R L+ G +P HY + E + + L D
Sbjct: 181 YKWSDKGPRLVLVDYGVKWNILRLLDEQGFEVLSVPSHYSEEQVRALEPDAIFLSNGPGD 240
Query: 207 FLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGG 244
VL + V + Y L + +L +LGG
Sbjct: 241 PAVLDQ--AVKNAKSYCEDLPVAGICLGHQILGQALGG 276
>sp|Q24MT3|SECA_DESHY Protein translocase subunit SecA OS=Desulfitobacterium hafniense
(strain Y51) GN=secA PE=3 SV=2
Length = 834
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 142 LVDFLYGWQEGKLPVEITCVISNHDRG-----------PNSHVIRFLERHGIPYHYLCAK 190
L D +Y +EGK + +I H +G + + LER GIP+ L AK
Sbjct: 402 LPDVVYRTEEGKFKAVVEEIIERHKKGQPVLVGTVSVEKSERLSSMLERRGIPHQVLNAK 461
Query: 191 ENEREEELL 199
+E+E E++
Sbjct: 462 FHEKEAEII 470
>sp|B0TGY6|SECA_HELMI Protein translocase subunit SecA OS=Heliobacterium modesticaldum
(strain ATCC 51547 / Ice1) GN=secA PE=3 SV=1
Length = 843
Score = 33.9 bits (76), Expect = 1.4, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 104 EDFFKLSKMFNAMRSVVRV--PDIDPKYKVAVL-----ASKQEHCLVDFLYGWQEGKLPV 156
+++F++ + M + P+ YK+ V+ Q L D +Y +EGK
Sbjct: 356 QNYFRMYDKLSGMTGTAKTEEPEFMQIYKMDVVQIPTNKPMQRKDLPDVVYRTEEGKFNA 415
Query: 157 EITCVISNHDRG-----------PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205
+ ++ + RG + + L+R G+P+ L AK +E+E E+++
Sbjct: 416 VVEEIVQSFRRGQPVLVGTVSIEKSEQLSDKLKRRGVPHQVLNAKHHEKEAEIVKNAGQR 475
Query: 206 DFLVLARYM 214
+ +A M
Sbjct: 476 GMVTIATNM 484
>sp|A3DF88|SECA_CLOTH Protein translocase subunit SecA OS=Clostridium thermocellum
(strain ATCC 27405 / DSM 1237) GN=secA PE=3 SV=1
Length = 910
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 144 DFLYGWQEGKLPVEITCVISNHDRG-----------PNSHVIRFLERHGIPYHYLCAKEN 192
D +Y + GK I VI H +G + + L+RHGIP+ L AK +
Sbjct: 421 DSVYKNERGKFNAVINQVIECHKKGQPVLIGTISIEKSELLSSMLKRHGIPHQVLNAKYH 480
Query: 193 EREEELLELVQNTDFLVLARYM 214
E+E E++ + +A M
Sbjct: 481 EKEAEIIAQAGKLGAVTIATNM 502
>sp|Q5WDF8|SECA_BACSK Protein translocase subunit SecA OS=Bacillus clausii (strain
KSM-K16) GN=secA PE=3 SV=1
Length = 841
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 144 DFLYGWQEGKLPVEITCVISNHDRG----------PNSHVI-RFLERHGIPYHYLCAKEN 192
D +Y +GK + + H G S V+ + L R IP+H L AK +
Sbjct: 406 DLIYKTMQGKFNAVVNEIAELHKTGRPVLVGTVNVETSEVVSKMLTRKRIPHHVLNAKNH 465
Query: 193 EREEELLELVQNTDFLVLARYM 214
ERE E++E + + +A M
Sbjct: 466 EREAEIIEKAGHKGAVTIATNM 487
>sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E
PE=1 SV=1
Length = 424
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 180 HGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQL 235
HG+ HY+ KENE+ ++L EL+ +F N++ ++V + C+ QL
Sbjct: 257 HGLQQHYVNLKENEKNKKLFELLDVLEF---------NQVVIFVKSVQRCVALSQL 303
>sp|P07866|LTE1_YEAST Guanine nucleotide exchange factor LTE1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=LTE1 PE=1 SV=2
Length = 1435
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 234 QLTVLNSSLGGINISLSSFDATIEWI 259
QL V N +L GI++++S F+ T++WI
Sbjct: 1235 QLLVRNETLSGIDLAISRFNLTVDWI 1260
>sp|A7H8W2|TTCA_ANADF tRNA 2-thiocytidine biosynthesis protein TtcA OS=Anaeromyxobacter
sp. (strain Fw109-5) GN=ttcA PE=3 SV=1
Length = 303
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 105 DFFKLSKMF-----NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEIT 159
D KL K NA+R + D D + VAV K + L+ L +E + P++
Sbjct: 16 DVSKLEKRLLRAAANAIRDFELIGDGD-RIMVAVSGGKDSYTLLHVLMRLRE-RAPIDFD 73
Query: 160 CVISNHDRGPNSHVIRFLERH----GIPYHYLCA 189
V N D+G + +ERH G+P+ L A
Sbjct: 74 LVAVNLDQGQPGYPAEIVERHFQAVGVPHRMLYA 107
>sp|Q1AVJ6|SECA_RUBXD Protein translocase subunit SecA OS=Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129) GN=secA PE=3 SV=1
Length = 902
Score = 31.6 bits (70), Expect = 6.8, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 144 DFLYGWQEGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLCAKEN 192
D +Y ++ K I ++ H +G + H+ L+R GI ++ L AK +
Sbjct: 405 DLVYRTKKAKYAAVIDDIVERHRKGQPVLVGTVSVEVSEHLSALLKRRGIKHNVLNAKHH 464
Query: 193 EREEELL 199
ERE E++
Sbjct: 465 EREAEII 471
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,163,187
Number of Sequences: 539616
Number of extensions: 3746074
Number of successful extensions: 12245
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 12213
Number of HSP's gapped (non-prelim): 42
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)