Query 024345
Match_columns 269
No_of_seqs 246 out of 2086
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00655 PurU formyltetrahydr 100.0 8.3E-57 1.8E-61 413.9 25.3 213 43-268 1-222 (280)
2 PRK13010 purU formyltetrahydro 100.0 1.9E-56 4.1E-61 413.1 24.9 217 38-268 5-231 (289)
3 PRK13011 formyltetrahydrofolat 100.0 2.4E-55 5.2E-60 405.3 26.2 218 37-268 2-227 (286)
4 PRK06027 purU formyltetrahydro 100.0 5E-55 1.1E-59 403.2 26.1 216 39-268 3-227 (286)
5 COG0788 PurU Formyltetrahydrof 100.0 1.9E-55 4.1E-60 395.9 22.5 217 39-268 4-228 (287)
6 PLN02828 formyltetrahydrofolat 100.0 1.2E-51 2.5E-56 377.0 23.2 204 59-268 1-209 (268)
7 COG0299 PurN Folate-dependent 100.0 6E-39 1.3E-43 278.9 13.0 132 129-268 1-141 (200)
8 TIGR00639 PurN phosphoribosylg 100.0 1.7E-33 3.8E-38 246.1 15.1 132 129-268 1-141 (190)
9 PLN02331 phosphoribosylglycina 100.0 3.8E-33 8.2E-38 246.9 14.7 131 130-268 1-145 (207)
10 KOG3076 5'-phosphoribosylglyci 100.0 2.6E-33 5.7E-38 241.5 12.5 134 127-268 5-149 (206)
11 PRK05647 purN phosphoribosylgl 100.0 1E-32 2.3E-37 242.8 14.0 133 128-268 1-142 (200)
12 PLN02285 methionyl-tRNA formyl 100.0 8.3E-31 1.8E-35 246.8 13.4 139 125-268 3-155 (334)
13 PF00551 Formyl_trans_N: Formy 100.0 1.4E-29 3E-34 218.8 10.9 132 129-268 1-141 (181)
14 COG0223 Fmt Methionyl-tRNA for 100.0 1.5E-28 3.2E-33 228.4 12.7 127 128-268 1-141 (307)
15 PRK06988 putative formyltransf 99.9 1.4E-26 2.9E-31 216.3 13.2 127 128-268 2-139 (312)
16 TIGR00460 fmt methionyl-tRNA f 99.9 4.4E-26 9.5E-31 212.8 13.1 126 129-268 1-140 (313)
17 PRK00005 fmt methionyl-tRNA fo 99.9 6.1E-26 1.3E-30 211.4 12.8 126 129-268 1-140 (309)
18 PRK08125 bifunctional UDP-gluc 99.9 7.4E-24 1.6E-28 214.6 13.4 126 129-268 1-137 (660)
19 PRK07579 hypothetical protein; 99.9 1.4E-21 3.1E-26 176.8 10.9 118 128-268 1-124 (245)
20 cd04893 ACT_GcvR_1 ACT domains 99.7 1.3E-16 2.9E-21 120.0 9.0 71 42-116 1-71 (77)
21 COG3830 ACT domain-containing 99.7 1.5E-16 3.3E-21 122.9 5.9 75 40-116 1-75 (90)
22 cd04870 ACT_PSP_1 CT domains f 99.7 4.5E-16 9.9E-21 116.1 8.3 69 44-115 1-69 (75)
23 cd04875 ACT_F4HF-DF N-terminal 99.6 8.4E-16 1.8E-20 114.1 9.5 72 44-115 1-72 (74)
24 KOG3082 Methionyl-tRNA formylt 99.6 1.6E-16 3.6E-21 146.1 4.3 125 127-267 5-142 (338)
25 cd04872 ACT_1ZPV ACT domain pr 99.6 2.6E-15 5.7E-20 115.2 9.2 76 42-120 1-76 (88)
26 PRK00194 hypothetical protein; 99.6 3.3E-15 7.1E-20 114.7 7.2 78 40-120 1-78 (90)
27 cd04869 ACT_GcvR_2 ACT domains 99.6 1.3E-14 2.8E-19 108.7 9.4 75 44-120 1-79 (81)
28 PF13740 ACT_6: ACT domain; PD 99.6 6E-15 1.3E-19 110.6 7.1 71 41-115 1-71 (76)
29 PRK11589 gcvR glycine cleavage 99.6 1.3E-14 2.7E-19 127.3 9.9 92 24-116 76-172 (190)
30 PRK11589 gcvR glycine cleavage 99.5 2.4E-13 5.2E-18 119.2 12.3 105 39-148 5-115 (190)
31 COG2716 GcvR Glycine cleavage 99.3 3.8E-12 8.2E-17 109.1 7.6 90 25-115 74-168 (176)
32 KOG2452 Formyltetrahydrofolate 99.0 7.2E-10 1.6E-14 107.8 5.5 130 129-268 1-139 (881)
33 cd04871 ACT_PSP_2 ACT domains 99.0 6.8E-10 1.5E-14 85.1 4.2 70 44-115 1-78 (84)
34 COG2716 GcvR Glycine cleavage 98.7 7E-08 1.5E-12 83.0 9.1 137 42-185 5-149 (176)
35 PF01842 ACT: ACT domain; Int 98.7 8.7E-08 1.9E-12 67.9 7.8 64 43-110 1-65 (66)
36 CHL00100 ilvH acetohydroxyacid 98.6 1.5E-07 3.3E-12 81.6 7.7 73 42-116 2-74 (174)
37 PF13291 ACT_4: ACT domain; PD 98.5 1E-06 2.2E-11 65.9 8.5 68 39-110 3-70 (80)
38 cd04925 ACT_ACR_2 ACT domain-c 98.3 2.5E-06 5.4E-11 63.5 7.8 46 44-91 2-47 (74)
39 PRK08577 hypothetical protein; 98.3 9.7E-06 2.1E-10 67.1 10.3 75 36-110 50-124 (136)
40 PRK06737 acetolactate synthase 98.1 1.5E-05 3.2E-10 60.3 7.4 68 42-111 2-69 (76)
41 cd04873 ACT_UUR-ACR-like ACT d 98.0 3.9E-05 8.4E-10 54.7 8.6 49 44-94 2-50 (70)
42 cd04878 ACT_AHAS N-terminal AC 98.0 3E-05 6.5E-10 55.0 7.6 64 44-109 2-65 (72)
43 cd04909 ACT_PDH-BS C-terminal 98.0 2.3E-05 4.9E-10 56.6 6.9 63 43-108 2-64 (69)
44 PRK11152 ilvM acetolactate syn 98.0 4E-05 8.6E-10 58.0 8.1 68 40-110 1-68 (76)
45 cd04886 ACT_ThrD-II-like C-ter 98.0 3E-05 6.6E-10 55.1 7.1 49 45-93 1-52 (73)
46 cd04887 ACT_MalLac-Enz ACT_Mal 98.0 3.9E-05 8.5E-10 55.9 7.5 61 45-110 2-62 (74)
47 cd04899 ACT_ACR-UUR-like_2 C-t 98.0 6.8E-05 1.5E-09 54.0 8.6 48 44-93 2-49 (70)
48 cd04888 ACT_PheB-BS C-terminal 98.0 4.7E-05 1E-09 55.6 7.8 50 44-94 2-51 (76)
49 PRK13562 acetolactate synthase 97.9 4.8E-05 1E-09 58.6 7.2 71 42-113 2-72 (84)
50 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.9 9.7E-05 2.1E-09 53.2 8.4 65 43-111 1-65 (79)
51 cd04928 ACT_TyrKc Uncharacteri 97.9 0.00014 3.1E-09 53.9 9.0 64 43-108 2-65 (68)
52 PRK08178 acetolactate synthase 97.9 8.5E-05 1.8E-09 58.6 8.1 75 37-114 3-77 (96)
53 cd04902 ACT_3PGDH-xct C-termin 97.8 7.3E-05 1.6E-09 54.0 6.9 61 45-109 2-62 (73)
54 cd04874 ACT_Af1403 N-terminal 97.8 0.00019 4.1E-09 51.0 8.5 63 44-110 2-64 (72)
55 cd04876 ACT_RelA-SpoT ACT dom 97.8 0.00012 2.5E-09 50.2 6.7 49 45-94 1-49 (71)
56 PRK04435 hypothetical protein; 97.7 0.00018 3.9E-09 60.7 8.8 66 23-94 55-120 (147)
57 cd04879 ACT_3PGDH-like ACT_3PG 97.7 0.00019 4.1E-09 50.5 7.5 61 45-109 2-62 (71)
58 PRK11895 ilvH acetolactate syn 97.6 0.00026 5.7E-09 60.8 8.1 70 42-113 2-71 (161)
59 cd04877 ACT_TyrR N-terminal AC 97.6 0.00021 4.5E-09 52.8 6.4 58 44-110 2-59 (74)
60 cd04900 ACT_UUR-like_1 ACT dom 97.6 0.00056 1.2E-08 50.4 8.5 33 44-76 3-35 (73)
61 cd04903 ACT_LSD C-terminal ACT 97.6 0.00046 1E-08 48.7 7.5 61 45-109 2-62 (71)
62 cd04927 ACT_ACR-like_2 Second 97.5 0.001 2.2E-08 49.8 9.5 35 43-77 1-35 (76)
63 TIGR00119 acolac_sm acetolacta 97.5 0.00035 7.6E-09 59.8 7.9 70 43-114 2-71 (157)
64 PRK03381 PII uridylyl-transfer 97.5 0.0028 6E-08 66.5 16.1 71 40-112 597-668 (774)
65 cd04883 ACT_AcuB C-terminal AC 97.5 0.0012 2.6E-08 47.7 9.0 62 44-109 3-64 (72)
66 cd04908 ACT_Bt0572_1 N-termina 97.5 0.0011 2.5E-08 47.6 8.6 58 43-108 2-59 (66)
67 cd04926 ACT_ACR_4 C-terminal 97.5 0.0011 2.5E-08 48.8 8.8 66 44-114 3-68 (72)
68 cd04884 ACT_CBS C-terminal ACT 97.4 0.0011 2.5E-08 48.3 7.9 32 45-76 2-33 (72)
69 cd04901 ACT_3PGDH C-terminal A 97.4 0.00032 7E-09 50.2 4.9 58 45-108 2-59 (69)
70 PF13710 ACT_5: ACT domain; PD 97.4 0.00079 1.7E-08 48.8 6.9 59 51-111 1-59 (63)
71 cd04889 ACT_PDH-BS-like C-term 97.4 0.0006 1.3E-08 47.3 5.9 46 45-91 1-46 (56)
72 cd04905 ACT_CM-PDT C-terminal 97.4 0.0018 3.9E-08 48.3 8.8 65 44-111 3-68 (80)
73 cd04880 ACT_AAAH-PDT-like ACT 97.3 0.0017 3.6E-08 47.8 8.2 47 45-91 2-49 (75)
74 TIGR01693 UTase_glnD [Protein- 97.3 0.00057 1.2E-08 72.2 7.1 70 38-107 775-846 (850)
75 cd04897 ACT_ACR_3 ACT domain-c 97.2 0.0006 1.3E-08 51.5 4.9 34 43-76 2-35 (75)
76 cd04895 ACT_ACR_1 ACT domain-c 97.2 0.002 4.3E-08 48.2 7.6 34 43-76 2-35 (72)
77 cd02116 ACT ACT domains are co 97.1 0.003 6.4E-08 40.8 7.1 33 45-77 1-33 (60)
78 cd04882 ACT_Bt0572_2 C-termina 97.1 0.0027 5.9E-08 44.6 7.0 58 45-108 2-59 (65)
79 COG1707 ACT domain-containing 96.8 0.023 5E-07 49.4 11.6 87 43-137 3-92 (218)
80 cd04896 ACT_ACR-like_3 ACT dom 96.8 0.014 3E-07 44.0 9.1 33 44-76 2-34 (75)
81 TIGR00719 sda_beta L-serine de 96.7 0.007 1.5E-07 53.7 8.0 53 41-93 147-199 (208)
82 PRK07334 threonine dehydratase 96.6 0.013 2.8E-07 56.8 9.8 69 37-109 321-392 (403)
83 PRK10872 relA (p)ppGpp synthet 96.5 0.013 2.8E-07 61.3 9.6 71 40-114 664-734 (743)
84 PF13840 ACT_7: ACT domain ; P 96.5 0.0074 1.6E-07 43.8 5.5 34 42-75 6-43 (65)
85 KOG2663 Acetolactate synthase, 96.5 0.0049 1.1E-07 56.5 5.4 74 38-113 73-146 (309)
86 PRK11790 D-3-phosphoglycerate 96.4 0.0079 1.7E-07 58.6 7.0 66 39-110 335-400 (409)
87 cd04885 ACT_ThrD-I Tandem C-te 96.3 0.017 3.6E-07 41.9 6.7 61 45-108 1-61 (68)
88 PRK05092 PII uridylyl-transfer 96.3 0.008 1.7E-07 64.3 6.5 38 41-78 842-879 (931)
89 PRK11092 bifunctional (p)ppGpp 96.2 0.029 6.3E-07 58.4 10.1 70 40-114 624-693 (702)
90 TIGR00691 spoT_relA (p)ppGpp s 96.1 0.036 7.7E-07 57.6 10.1 70 40-114 608-677 (683)
91 cd04931 ACT_PAH ACT domain of 96.1 0.074 1.6E-06 41.3 9.6 69 43-115 15-84 (90)
92 COG0440 IlvH Acetolactate synt 96.1 0.061 1.3E-06 46.4 9.6 98 40-141 2-99 (163)
93 cd04913 ACT_AKii-LysC-BS-like_ 95.9 0.048 1E-06 38.7 7.1 66 44-114 3-69 (75)
94 cd04904 ACT_AAAH ACT domain of 95.9 0.059 1.3E-06 39.9 7.8 61 46-111 4-65 (74)
95 PRK03381 PII uridylyl-transfer 95.7 0.051 1.1E-06 57.2 9.5 38 41-78 706-743 (774)
96 PRK05092 PII uridylyl-transfer 95.7 0.3 6.4E-06 52.5 15.1 67 41-110 731-804 (931)
97 COG0317 SpoT Guanosine polypho 95.6 0.086 1.9E-06 54.8 10.3 73 38-115 623-695 (701)
98 COG4492 PheB ACT domain-contai 95.6 0.064 1.4E-06 44.9 7.6 79 23-107 58-136 (150)
99 TIGR01127 ilvA_1Cterm threonin 95.5 0.064 1.4E-06 51.3 8.6 70 38-108 301-373 (380)
100 PRK13581 D-3-phosphoglycerate 95.1 0.047 1E-06 54.9 6.5 65 41-109 451-515 (526)
101 cd04894 ACT_ACR-like_1 ACT dom 95.0 0.17 3.6E-06 37.2 7.4 64 44-110 2-68 (69)
102 PRK08818 prephenate dehydrogen 95.0 0.12 2.7E-06 49.9 8.7 51 41-92 294-345 (370)
103 COG3978 Acetolactate synthase 95.0 0.18 3.8E-06 38.7 7.7 69 40-111 1-69 (86)
104 TIGR01327 PGDH D-3-phosphoglyc 94.7 0.056 1.2E-06 54.4 5.9 64 42-109 451-514 (525)
105 PRK08198 threonine dehydratase 94.5 0.092 2E-06 50.7 6.6 42 35-76 320-361 (404)
106 PRK09436 thrA bifunctional asp 94.3 0.52 1.1E-05 50.0 12.2 102 41-162 395-504 (819)
107 PRK06545 prephenate dehydrogen 94.2 0.17 3.6E-06 48.3 7.5 40 37-76 285-324 (359)
108 PRK06382 threonine dehydratase 94.2 0.21 4.6E-06 48.5 8.4 70 39-109 327-399 (406)
109 COG4747 ACT domain-containing 94.2 0.11 2.3E-06 42.9 5.2 122 43-185 4-134 (142)
110 cd04929 ACT_TPH ACT domain of 94.1 0.67 1.4E-05 34.6 9.2 61 48-113 6-67 (74)
111 cd04892 ACT_AK-like_2 ACT doma 93.9 0.47 1E-05 32.2 7.6 33 44-76 2-37 (65)
112 PRK05007 PII uridylyl-transfer 93.9 0.09 1.9E-06 56.1 5.5 49 38-86 804-854 (884)
113 PRK11899 prephenate dehydratas 93.9 0.53 1.1E-05 43.9 10.0 69 42-113 194-263 (279)
114 cd04930 ACT_TH ACT domain of t 93.9 0.47 1E-05 38.5 8.5 64 43-111 42-106 (115)
115 cd04937 ACT_AKi-DapG-BS_2 ACT 93.8 0.5 1.1E-05 33.5 7.8 59 43-114 2-63 (64)
116 PRK06349 homoserine dehydrogen 93.7 0.34 7.3E-06 47.5 8.8 69 37-110 343-411 (426)
117 COG2102 Predicted ATPases of P 93.6 0.55 1.2E-05 42.4 9.2 80 129-211 1-93 (223)
118 cd04932 ACT_AKiii-LysC-EC_1 AC 93.5 0.46 9.9E-06 35.4 7.3 32 44-75 3-37 (75)
119 COG2150 Predicted regulator of 93.5 0.37 7.9E-06 41.6 7.5 47 45-91 98-144 (167)
120 cd04922 ACT_AKi-HSDH-ThrA_2 AC 93.5 0.64 1.4E-05 32.4 7.8 33 44-76 3-38 (66)
121 PRK03059 PII uridylyl-transfer 93.4 0.49 1.1E-05 50.5 10.0 37 41-77 785-821 (856)
122 cd04919 ACT_AK-Hom3_2 ACT doma 93.3 0.75 1.6E-05 32.2 7.9 34 43-76 2-38 (66)
123 PRK01759 glnD PII uridylyl-tra 93.3 0.13 2.8E-06 54.8 5.4 38 39-76 780-817 (854)
124 PRK01759 glnD PII uridylyl-tra 93.3 0.45 9.8E-06 50.7 9.4 50 41-91 676-725 (854)
125 PRK05007 PII uridylyl-transfer 93.0 0.51 1.1E-05 50.5 9.5 50 41-91 700-749 (884)
126 cd04906 ACT_ThrD-I_1 First of 92.9 0.49 1.1E-05 35.8 6.7 32 43-76 2-33 (85)
127 cd04924 ACT_AK-Arch_2 ACT doma 92.6 1.1 2.3E-05 31.2 7.8 60 43-113 2-64 (66)
128 PRK00275 glnD PII uridylyl-tra 92.5 0.48 1E-05 50.8 8.5 50 41-91 703-752 (895)
129 PRK00275 glnD PII uridylyl-tra 92.2 0.85 1.8E-05 48.9 9.8 38 41-78 813-850 (895)
130 PRK08300 acetaldehyde dehydrog 91.9 0.51 1.1E-05 44.5 7.0 72 127-212 3-78 (302)
131 PRK04374 PII uridylyl-transfer 91.9 1 2.3E-05 48.2 10.0 39 40-78 794-832 (869)
132 cd04912 ACT_AKiii-LysC-EC-like 91.8 0.89 1.9E-05 33.4 6.8 33 43-75 2-37 (75)
133 COG1570 XseA Exonuclease VII, 91.7 1.1 2.4E-05 44.3 9.2 68 80-150 87-157 (440)
134 COG2844 GlnD UTP:GlnB (protein 91.7 0.28 6E-06 51.8 5.3 39 38-76 787-825 (867)
135 PRK09466 metL bifunctional asp 91.6 3 6.5E-05 44.4 13.0 101 41-163 390-499 (810)
136 PRK08526 threonine dehydratase 91.6 0.77 1.7E-05 44.8 8.0 39 38-76 322-360 (403)
137 PRK04374 PII uridylyl-transfer 91.6 6 0.00013 42.5 15.2 66 41-108 689-757 (869)
138 cd04918 ACT_AK1-AT_2 ACT domai 91.4 1.4 3E-05 31.4 7.3 60 43-113 2-63 (65)
139 PRK03059 PII uridylyl-transfer 91.3 1.3 2.8E-05 47.3 10.0 52 41-93 677-728 (856)
140 PRK10820 DNA-binding transcrip 91.2 0.71 1.5E-05 46.4 7.5 90 44-152 2-92 (520)
141 TIGR01693 UTase_glnD [Protein- 91.2 1.2 2.7E-05 47.3 9.6 37 40-76 666-702 (850)
142 cd04916 ACT_AKiii-YclM-BS_2 AC 91.1 2 4.3E-05 29.8 7.9 34 43-76 2-38 (66)
143 TIGR01761 thiaz-red thiazoliny 91.0 0.53 1.1E-05 45.1 6.1 52 127-185 2-53 (343)
144 PLN02819 lysine-ketoglutarate 90.8 8 0.00017 42.4 15.3 162 41-212 462-656 (1042)
145 COG0077 PheA Prephenate dehydr 90.8 2 4.4E-05 40.1 9.6 69 41-112 193-262 (279)
146 cd04915 ACT_AK-Ectoine_2 ACT d 90.8 2.3 4.9E-05 30.6 8.0 60 43-113 3-64 (66)
147 TIGR00290 MJ0570_dom MJ0570-re 90.6 2.1 4.5E-05 38.7 9.2 78 129-210 1-91 (223)
148 cd01994 Alpha_ANH_like_IV This 90.1 2.6 5.6E-05 37.0 9.3 70 130-203 1-82 (194)
149 PRK10622 pheA bifunctional cho 90.0 1.6 3.5E-05 42.5 8.6 69 42-113 297-366 (386)
150 PF01902 ATP_bind_4: ATP-bindi 89.7 1.2 2.6E-05 40.0 6.9 78 129-210 1-91 (218)
151 TIGR00289 conserved hypothetic 89.6 3.2 7E-05 37.4 9.6 77 129-210 1-91 (222)
152 cd04868 ACT_AK-like ACT domain 89.5 0.9 2E-05 30.0 4.7 33 44-76 2-37 (60)
153 cd04933 ACT_AK1-AT_1 ACT domai 89.3 1.4 3E-05 33.3 6.0 57 50-114 12-69 (78)
154 cd04891 ACT_AK-LysC-DapG-like_ 89.0 2.6 5.6E-05 28.1 6.8 27 50-76 9-35 (61)
155 cd04936 ACT_AKii-LysC-BS-like_ 88.9 3.5 7.5E-05 28.0 7.5 32 44-75 2-36 (63)
156 TIGR02079 THD1 threonine dehyd 88.6 2.1 4.6E-05 41.7 8.3 73 36-109 319-391 (409)
157 PRK08639 threonine dehydratase 88.6 2.1 4.5E-05 41.8 8.3 73 36-109 330-402 (420)
158 PRK00907 hypothetical protein; 88.4 3.4 7.4E-05 32.4 7.8 67 41-111 16-84 (92)
159 cd04935 ACT_AKiii-DAPDC_1 ACT 88.3 1.8 3.8E-05 32.2 5.9 26 50-75 12-37 (75)
160 cd04923 ACT_AK-LysC-DapG-like_ 88.2 4.1 8.8E-05 27.7 7.5 32 44-75 2-36 (63)
161 PRK11898 prephenate dehydratas 87.6 4.2 9.2E-05 37.8 9.3 67 42-111 196-264 (283)
162 PRK10696 tRNA 2-thiocytidine b 87.4 5.1 0.00011 36.4 9.6 78 102-188 12-94 (258)
163 PF01408 GFO_IDH_MocA: Oxidore 87.4 1.7 3.7E-05 33.8 5.7 67 129-213 1-71 (120)
164 PRK08841 aspartate kinase; Val 86.9 2.3 5E-05 41.3 7.5 62 41-115 317-378 (392)
165 TIGR01270 Trp_5_monoox tryptop 86.5 4.5 9.7E-05 40.4 9.2 78 28-112 19-98 (464)
166 PF00185 OTCace: Aspartate/orn 86.3 1.4 3E-05 37.3 4.9 100 128-246 2-127 (158)
167 PRK02047 hypothetical protein; 86.2 6.3 0.00014 30.6 8.2 72 37-113 11-85 (91)
168 cd04920 ACT_AKiii-DAPDC_2 ACT 86.0 5.3 0.00012 28.3 7.2 32 44-75 2-36 (63)
169 cd04921 ACT_AKi-HSDH-ThrA-like 85.9 5.7 0.00012 28.8 7.6 34 43-76 2-38 (80)
170 PLN02317 arogenate dehydratase 85.2 6.3 0.00014 38.4 9.4 36 42-77 283-318 (382)
171 PRK05447 1-deoxy-D-xylulose 5- 85.1 7.2 0.00016 38.1 9.8 113 128-257 1-117 (385)
172 TIGR00237 xseA exodeoxyribonuc 85.1 8.4 0.00018 38.0 10.4 69 81-152 82-153 (432)
173 TIGR03215 ac_ald_DH_ac acetald 85.0 7 0.00015 36.5 9.3 51 128-186 1-53 (285)
174 cd04890 ACT_AK-like_1 ACT doma 84.9 6.4 0.00014 27.2 7.1 31 45-75 3-36 (62)
175 PRK00341 hypothetical protein; 84.2 6.4 0.00014 30.6 7.3 66 42-112 17-84 (91)
176 PLN02551 aspartokinase 84.0 19 0.00041 36.5 12.6 86 42-137 366-454 (521)
177 PF10686 DUF2493: Protein of u 83.9 6 0.00013 29.3 6.8 59 128-189 3-65 (71)
178 PRK06291 aspartate kinase; Pro 83.7 15 0.00034 36.3 11.7 35 42-76 321-358 (465)
179 cd04934 ACT_AK-Hom3_1 CT domai 82.0 4.7 0.0001 29.8 5.6 25 51-75 13-37 (73)
180 COG3603 Uncharacterized conser 81.4 4.5 9.7E-05 33.4 5.6 60 43-113 64-126 (128)
181 PRK06635 aspartate kinase; Rev 81.4 7.1 0.00015 37.6 8.1 35 41-75 339-376 (404)
182 COG0673 MviM Predicted dehydro 81.1 6.8 0.00015 36.0 7.7 69 127-212 2-75 (342)
183 TIGR01268 Phe4hydrox_tetr phen 80.8 8.2 0.00018 38.3 8.4 67 43-113 17-84 (436)
184 PRK00286 xseA exodeoxyribonucl 80.6 21 0.00045 34.9 11.2 68 81-151 88-158 (438)
185 PRK15385 magnesium transport p 80.3 25 0.00053 32.0 10.6 81 40-122 140-222 (225)
186 PLN02696 1-deoxy-D-xylulose-5- 79.7 8.4 0.00018 38.4 8.1 56 127-188 56-113 (454)
187 TIGR00656 asp_kin_monofn aspar 79.2 7.7 0.00017 37.3 7.6 61 41-114 336-399 (401)
188 PRK07634 pyrroline-5-carboxyla 78.7 8.7 0.00019 33.9 7.3 70 128-213 4-75 (245)
189 PRK14664 tRNA-specific 2-thiou 78.7 13 0.00028 36.0 8.9 57 127-188 4-62 (362)
190 PF03807 F420_oxidored: NADP o 78.3 11 0.00023 28.2 6.7 73 130-218 1-75 (96)
191 cd04914 ACT_AKi-DapG-BS_1 ACT 78.1 16 0.00035 26.2 7.3 34 43-76 2-36 (67)
192 COG4747 ACT domain-containing 78.0 10 0.00022 31.4 6.7 61 44-111 71-131 (142)
193 PRK09181 aspartate kinase; Val 77.8 46 0.001 33.3 12.8 82 41-138 328-412 (475)
194 cd04917 ACT_AKiii-LysC-EC_2 AC 77.7 18 0.0004 25.2 7.4 31 43-75 2-35 (64)
195 PRK06635 aspartate kinase; Rev 77.2 39 0.00085 32.5 11.8 100 44-152 264-367 (404)
196 COG4569 MhpF Acetaldehyde dehy 77.0 12 0.00027 34.0 7.6 53 127-186 3-57 (310)
197 PRK12483 threonine dehydratase 75.7 15 0.00033 37.2 8.8 67 38-109 341-409 (521)
198 PRK04998 hypothetical protein; 75.4 20 0.00042 27.5 7.4 71 39-114 12-83 (88)
199 PF10727 Rossmann-like: Rossma 75.3 4.3 9.3E-05 33.4 4.0 75 125-218 7-82 (127)
200 PF04007 DUF354: Protein of un 74.6 25 0.00054 33.6 9.5 77 129-212 1-91 (335)
201 TIGR03590 PseG pseudaminic aci 74.6 21 0.00046 32.6 8.9 70 139-214 15-90 (279)
202 PLN02342 ornithine carbamoyltr 74.4 17 0.00037 35.0 8.4 100 127-246 193-314 (348)
203 PRK07431 aspartate kinase; Pro 74.3 35 0.00076 34.7 11.1 95 49-151 447-545 (587)
204 PRK08210 aspartate kinase I; R 73.9 14 0.00029 35.8 7.7 61 41-114 338-401 (403)
205 COG3283 TyrR Transcriptional r 73.9 4.7 0.0001 39.6 4.4 92 44-154 2-94 (511)
206 TIGR02432 lysidine_TilS_N tRNA 73.8 31 0.00068 29.1 9.2 58 130-188 1-65 (189)
207 PRK09181 aspartate kinase; Val 73.7 13 0.00028 37.2 7.6 64 41-115 401-466 (475)
208 PRK13304 L-aspartate dehydroge 73.6 16 0.00035 33.3 7.8 51 128-185 1-52 (265)
209 PF01171 ATP_bind_3: PP-loop f 72.9 15 0.00033 31.2 7.0 58 130-188 1-65 (182)
210 TIGR00243 Dxr 1-deoxy-D-xylulo 72.6 20 0.00044 35.1 8.4 55 128-188 1-57 (389)
211 PRK07431 aspartate kinase; Pro 72.1 13 0.00029 37.7 7.5 62 41-115 518-582 (587)
212 PRK13302 putative L-aspartate 72.0 16 0.00036 33.5 7.4 51 127-184 5-56 (271)
213 PRK09224 threonine dehydratase 71.8 22 0.00048 35.7 8.8 67 39-110 325-393 (504)
214 cd01992 PP-ATPase N-terminal d 71.4 36 0.00079 28.4 9.0 86 130-216 1-108 (185)
215 PLN02551 aspartokinase 71.0 15 0.00032 37.3 7.4 63 41-114 444-508 (521)
216 PF04359 DUF493: Protein of un 70.9 8.4 0.00018 29.1 4.4 73 38-114 6-80 (85)
217 PLN02550 threonine dehydratase 70.9 15 0.00033 37.8 7.5 70 36-110 411-481 (591)
218 PRK00227 glnD PII uridylyl-tra 70.8 21 0.00046 37.5 8.7 81 43-135 547-631 (693)
219 TIGR03693 ocin_ThiF_like putat 70.4 24 0.00053 36.6 8.8 78 127-213 128-213 (637)
220 PF02670 DXP_reductoisom: 1-de 70.3 13 0.00028 30.8 5.7 110 131-257 1-116 (129)
221 PRK09034 aspartate kinase; Rev 70.0 63 0.0014 32.0 11.5 99 42-152 308-412 (454)
222 TIGR00657 asp_kinases aspartat 69.8 17 0.00037 35.5 7.4 35 41-75 377-414 (441)
223 PRK00726 murG undecaprenyldiph 69.1 20 0.00043 33.1 7.4 79 128-213 1-100 (357)
224 PRK00779 ornithine carbamoyltr 68.9 26 0.00056 33.0 8.1 99 128-246 152-272 (304)
225 PRK08210 aspartate kinase I; R 68.9 46 0.001 32.1 10.1 35 42-76 271-306 (403)
226 PRK06291 aspartate kinase; Pro 68.7 20 0.00043 35.6 7.6 64 41-115 397-463 (465)
227 PRK09436 thrA bifunctional asp 68.4 56 0.0012 35.0 11.4 36 41-76 314-352 (819)
228 TIGR01124 ilvA_2Cterm threonin 68.3 23 0.00049 35.7 8.0 69 38-110 321-389 (499)
229 COG0345 ProC Pyrroline-5-carbo 67.6 21 0.00046 33.1 7.2 73 128-218 1-76 (266)
230 PRK09034 aspartate kinase; Rev 67.5 21 0.00046 35.3 7.6 63 41-114 384-449 (454)
231 PRK10660 tilS tRNA(Ile)-lysidi 66.1 26 0.00056 34.6 7.8 62 127-188 14-82 (436)
232 KOG2741 Dimeric dihydrodiol de 65.4 28 0.00061 33.6 7.6 73 125-211 3-79 (351)
233 TIGR00656 asp_kin_monofn aspar 65.0 1.3E+02 0.0027 28.9 12.3 35 42-76 260-297 (401)
234 COG0394 Wzb Protein-tyrosine-p 64.6 21 0.00046 29.7 6.0 90 128-224 2-97 (139)
235 PRK13602 putative ribosomal pr 64.4 26 0.00057 26.5 6.0 49 134-188 12-60 (82)
236 PRK02255 putrescine carbamoylt 64.1 54 0.0012 31.4 9.4 100 127-246 153-279 (338)
237 PRK06552 keto-hydroxyglutarate 63.9 1.1E+02 0.0023 27.3 11.3 120 44-210 15-135 (213)
238 PF00448 SRP54: SRP54-type pro 63.9 31 0.00068 30.1 7.2 83 130-215 2-94 (196)
239 TIGR03759 conj_TIGR03759 integ 63.8 55 0.0012 29.2 8.6 59 126-188 107-166 (200)
240 PF10087 DUF2325: Uncharacteri 63.5 29 0.00062 26.6 6.2 51 160-211 3-55 (97)
241 PF14085 DUF4265: Domain of un 63.0 53 0.0011 26.4 7.9 82 13-112 30-112 (117)
242 PRK13600 putative ribosomal pr 62.3 15 0.00033 28.2 4.3 44 144-189 20-63 (84)
243 COG2844 GlnD UTP:GlnB (protein 61.3 34 0.00073 36.7 7.9 38 41-78 683-720 (867)
244 PF02601 Exonuc_VII_L: Exonucl 61.2 38 0.00083 31.4 7.7 29 123-151 9-37 (319)
245 PRK06683 hypothetical protein; 61.1 15 0.00032 27.9 4.1 49 134-188 12-60 (82)
246 TIGR01133 murG undecaprenyldip 61.0 36 0.00079 30.9 7.4 78 129-213 1-99 (348)
247 PF03054 tRNA_Me_trans: tRNA m 60.9 23 0.0005 34.2 6.2 85 129-218 1-130 (356)
248 PRK10126 tyrosine phosphatase; 60.7 56 0.0012 27.0 7.9 81 128-214 2-85 (147)
249 COG2061 ACT-domain-containing 60.3 1.1E+02 0.0025 26.4 11.6 105 40-151 3-110 (170)
250 PRK01581 speE spermidine synth 58.7 1.9E+02 0.004 28.4 14.4 134 25-179 53-192 (374)
251 PRK13530 arsenate reductase; P 58.6 44 0.00095 27.3 6.8 77 128-212 3-82 (133)
252 TIGR02689 ars_reduc_gluta arse 56.9 31 0.00068 27.7 5.6 76 129-212 1-79 (126)
253 PRK12446 undecaprenyldiphospho 56.0 44 0.00095 31.7 7.2 80 128-214 1-102 (352)
254 TIGR03679 arCOG00187 arCOG0018 55.9 87 0.0019 27.8 8.7 74 133-210 2-92 (218)
255 cd05017 SIS_PGI_PMI_1 The memb 55.7 75 0.0016 24.9 7.5 56 127-190 42-99 (119)
256 PF04273 DUF442: Putative phos 55.6 57 0.0012 26.1 6.8 50 133-190 9-66 (110)
257 COG0482 TrmU Predicted tRNA(5- 55.6 58 0.0013 31.6 8.0 87 127-218 2-130 (356)
258 PF04592 SelP_N: Selenoprotein 55.6 54 0.0012 30.1 7.3 58 156-218 61-124 (238)
259 PF00205 TPP_enzyme_M: Thiamin 55.5 11 0.00023 30.5 2.6 44 171-214 29-87 (137)
260 PRK14561 hypothetical protein; 54.3 29 0.00063 30.2 5.3 54 129-188 1-57 (194)
261 KOG0780 Signal recognition par 53.7 1.7E+02 0.0036 29.3 10.7 151 55-217 31-196 (483)
262 COG3453 Uncharacterized protei 53.1 67 0.0014 26.7 6.8 55 158-212 29-93 (130)
263 PRK03868 glucose-6-phosphate i 52.8 54 0.0012 32.2 7.4 59 128-190 111-175 (410)
264 COG2243 CobF Precorrin-2 methy 52.6 1.2E+02 0.0026 27.7 9.2 106 96-217 65-179 (234)
265 PRK07679 pyrroline-5-carboxyla 52.3 54 0.0012 29.8 7.0 73 129-218 4-79 (279)
266 KOG2805 tRNA (5-methylaminomet 51.7 59 0.0013 31.4 7.1 57 127-188 4-74 (377)
267 PRK09084 aspartate kinase III; 51.5 95 0.0021 30.7 9.0 34 42-75 306-342 (448)
268 PRK00143 mnmA tRNA-specific 2- 51.5 60 0.0013 31.0 7.4 55 129-188 1-70 (346)
269 cd06390 PBP1_iGluR_AMPA_GluR1 50.7 2.1E+02 0.0046 27.1 11.1 122 41-188 54-178 (364)
270 PRK13601 putative L7Ae-like ri 50.2 28 0.00061 26.5 4.0 49 134-188 9-57 (82)
271 TIGR00657 asp_kinases aspartat 50.1 2.5E+02 0.0055 27.4 12.2 36 41-76 301-338 (441)
272 PF07485 DUF1529: Domain of Un 50.0 34 0.00074 28.1 4.7 50 54-108 68-118 (123)
273 TIGR00658 orni_carb_tr ornithi 50.0 90 0.0019 29.3 8.2 55 177-246 197-271 (304)
274 PRK00536 speE spermidine synth 49.8 29 0.00063 32.1 4.8 44 125-180 70-113 (262)
275 PRK01018 50S ribosomal protein 49.8 28 0.00061 27.2 4.1 49 134-188 17-65 (99)
276 PRK13940 glutamyl-tRNA reducta 49.6 49 0.0011 32.5 6.6 68 127-212 180-250 (414)
277 PRK13376 pyrB bifunctional asp 49.6 1.1E+02 0.0023 31.4 9.1 69 127-207 173-244 (525)
278 PRK10867 signal recognition pa 49.2 2.7E+02 0.0058 27.6 11.7 152 55-216 30-195 (433)
279 COG0527 LysC Aspartokinases [A 48.8 1.3E+02 0.0027 30.1 9.3 37 41-77 306-345 (447)
280 cd01993 Alpha_ANH_like_II This 48.6 74 0.0016 26.3 6.8 58 130-188 1-67 (185)
281 PLN02688 pyrroline-5-carboxyla 48.6 78 0.0017 28.2 7.3 47 129-184 1-51 (266)
282 TIGR00268 conserved hypothetic 48.2 61 0.0013 29.2 6.6 56 128-188 12-72 (252)
283 cd04907 ACT_ThrD-I_2 Second of 48.1 1.2E+02 0.0025 22.8 8.0 62 43-109 2-64 (81)
284 PRK12491 pyrroline-5-carboxyla 47.9 53 0.0012 30.1 6.2 72 129-218 3-77 (272)
285 PRK14449 acylphosphatase; Prov 47.8 1E+02 0.0022 23.6 6.9 59 101-163 17-75 (90)
286 PRK11880 pyrroline-5-carboxyla 47.5 65 0.0014 28.7 6.7 15 128-142 2-17 (267)
287 COG0527 LysC Aspartokinases [A 47.5 33 0.00072 34.1 5.1 37 39-75 380-419 (447)
288 PRK09977 putative Mg(2+) trans 47.4 1.5E+02 0.0032 26.7 8.8 62 42-108 144-205 (215)
289 PF01890 CbiG_C: Cobalamin syn 47.2 81 0.0018 25.5 6.5 56 133-188 5-65 (121)
290 PTZ00345 glycerol-3-phosphate 46.8 88 0.0019 30.3 7.8 89 127-218 10-107 (365)
291 COG2910 Putative NADH-flavin r 46.6 81 0.0018 28.3 6.8 33 129-167 1-36 (211)
292 TIGR00511 ribulose_e2b2 ribose 46.2 1.4E+02 0.003 28.1 8.8 54 133-188 119-173 (301)
293 COG1921 SelA Selenocysteine sy 45.8 93 0.002 30.6 7.7 81 130-212 134-221 (395)
294 PRK05472 redox-sensing transcr 45.8 29 0.00062 30.5 4.0 69 127-212 83-154 (213)
295 PRK14665 mnmA tRNA-specific 2- 45.7 97 0.0021 29.9 7.9 58 127-189 4-68 (360)
296 COG0240 GpsA Glycerol-3-phosph 45.5 80 0.0017 30.3 7.1 80 128-218 1-85 (329)
297 PRK08961 bifunctional aspartat 45.0 2.3E+02 0.0051 30.4 11.3 34 42-75 322-358 (861)
298 COG0528 PyrH Uridylate kinase 45.0 78 0.0017 29.1 6.6 17 172-188 200-216 (238)
299 COG0421 SpeE Spermidine syntha 44.7 76 0.0016 29.6 6.7 77 129-215 78-160 (282)
300 PLN02256 arogenate dehydrogena 44.5 1E+02 0.0022 28.8 7.7 46 127-184 35-81 (304)
301 PF01113 DapB_N: Dihydrodipico 44.5 47 0.001 26.6 4.7 34 129-166 1-36 (124)
302 PRK09536 btuD corrinoid ABC tr 44.0 1.2E+02 0.0027 29.5 8.4 54 156-213 291-347 (402)
303 PRK06372 translation initiatio 43.9 1.3E+02 0.0028 27.8 8.0 52 133-188 90-141 (253)
304 PRK08335 translation initiatio 43.8 1.5E+02 0.0032 27.7 8.5 48 139-188 120-167 (275)
305 cd06278 PBP1_LacI_like_2 Ligan 43.5 1.4E+02 0.003 25.6 7.9 71 99-188 14-84 (266)
306 PRK14447 acylphosphatase; Prov 43.3 1.1E+02 0.0023 23.8 6.4 59 102-163 19-77 (95)
307 TIGR00420 trmU tRNA (5-methyla 43.3 58 0.0012 31.2 5.9 55 129-188 1-70 (352)
308 PRK11391 etp phosphotyrosine-p 43.2 1.2E+02 0.0026 25.1 7.1 79 129-213 3-84 (144)
309 COG2179 Predicted hydrolase of 43.0 49 0.0011 29.0 4.8 70 140-218 49-122 (175)
310 cd03466 Nitrogenase_NifN_2 Nit 42.9 3E+02 0.0065 26.9 10.9 95 45-188 303-397 (429)
311 PF01210 NAD_Gly3P_dh_N: NAD-d 42.7 12 0.00026 31.2 1.1 78 130-218 1-83 (157)
312 PF00708 Acylphosphatase: Acyl 42.6 1.1E+02 0.0024 23.1 6.3 58 101-162 18-75 (91)
313 cd04911 ACT_AKiii-YclM-BS_1 AC 42.4 1.4E+02 0.0031 22.4 6.7 59 50-116 12-70 (76)
314 PRK07714 hypothetical protein; 42.1 41 0.00089 26.2 3.9 49 134-188 19-67 (100)
315 PF09419 PGP_phosphatase: Mito 42.0 82 0.0018 27.2 6.1 76 141-218 63-148 (168)
316 PRK13820 argininosuccinate syn 41.9 75 0.0016 31.2 6.5 58 128-189 2-64 (394)
317 PF02254 TrkA_N: TrkA-N domain 41.8 1.5E+02 0.0033 22.5 7.3 67 131-211 1-69 (116)
318 COG0373 HemA Glutamyl-tRNA red 41.6 86 0.0019 31.1 6.9 74 127-218 177-254 (414)
319 cd06281 PBP1_LacI_like_5 Ligan 41.6 1.6E+02 0.0035 25.5 8.2 73 98-188 13-86 (269)
320 PRK14423 acylphosphatase; Prov 41.1 1.1E+02 0.0024 23.4 6.2 59 101-163 19-77 (92)
321 COG1712 Predicted dinucleotide 41.1 90 0.002 28.8 6.4 50 129-185 1-51 (255)
322 cd01988 Na_H_Antiporter_C The 41.1 57 0.0012 24.9 4.7 41 173-213 61-103 (132)
323 TIGR03025 EPS_sugtrans exopoly 40.6 2.3E+02 0.0049 27.6 9.7 89 127-217 124-228 (445)
324 PRK10124 putative UDP-glucose 40.5 2.1E+02 0.0046 28.3 9.6 89 127-217 142-243 (463)
325 PF01081 Aldolase: KDPG and KH 40.4 2.6E+02 0.0057 24.7 10.2 117 44-210 10-127 (196)
326 PRK07680 late competence prote 39.8 92 0.002 28.1 6.4 48 129-183 1-51 (273)
327 PRK10206 putative oxidoreducta 39.7 88 0.0019 29.5 6.5 67 128-212 1-72 (344)
328 COG0313 Predicted methyltransf 39.5 1.4E+02 0.0029 28.1 7.4 45 140-188 65-113 (275)
329 PF00585 Thr_dehydrat_C: C-ter 39.3 39 0.00085 25.9 3.4 66 40-109 8-74 (91)
330 COG2085 Predicted dinucleotide 39.2 1.4E+02 0.003 26.9 7.3 73 128-218 1-75 (211)
331 PRK00994 F420-dependent methyl 39.0 1.7E+02 0.0037 27.2 7.9 33 157-189 62-95 (277)
332 PRK12767 carbamoyl phosphate s 39.0 1.2E+02 0.0027 27.6 7.3 72 128-210 1-75 (326)
333 COG4693 PchG Oxidoreductase (N 39.0 61 0.0013 30.9 5.1 73 128-218 4-77 (361)
334 PLN02712 arogenate dehydrogena 38.8 1E+02 0.0022 32.3 7.2 48 125-184 49-97 (667)
335 PRK06141 ornithine cyclodeamin 38.5 1.4E+02 0.003 27.8 7.6 92 98-215 103-200 (314)
336 PRK06476 pyrroline-5-carboxyla 38.4 91 0.002 27.8 6.1 43 129-180 1-46 (258)
337 cd05197 GH4_glycoside_hydrolas 38.4 47 0.001 32.7 4.6 74 129-211 1-81 (425)
338 cd05298 GH4_GlvA_pagL_like Gly 38.4 46 0.001 33.0 4.5 75 129-211 1-81 (437)
339 PRK00048 dihydrodipicolinate r 38.3 1.1E+02 0.0024 27.6 6.8 65 171-238 74-149 (257)
340 PF05368 NmrA: NmrA-like famil 38.2 1.9E+02 0.004 24.9 7.9 70 131-213 1-73 (233)
341 PRK05948 precorrin-2 methyltra 38.1 2.5E+02 0.0055 25.3 8.9 109 90-215 63-181 (238)
342 PF01488 Shikimate_DH: Shikima 38.1 40 0.00087 27.3 3.4 71 127-213 11-84 (135)
343 PRK11890 phosphate acetyltrans 38.0 2.1E+02 0.0045 27.3 8.6 77 126-210 20-102 (312)
344 TIGR02992 ectoine_eutC ectoine 37.9 1.2E+02 0.0026 28.5 7.1 71 127-214 128-204 (326)
345 TIGR00512 salvage_mtnA S-methy 37.8 1.6E+02 0.0035 28.2 8.0 65 137-210 163-231 (331)
346 PRK08535 translation initiatio 37.5 2.1E+02 0.0045 26.9 8.6 54 133-188 124-178 (310)
347 PF00266 Aminotran_5: Aminotra 37.5 1.1E+02 0.0025 28.4 6.9 78 129-213 62-148 (371)
348 PF01248 Ribosomal_L7Ae: Ribos 37.4 43 0.00094 25.3 3.3 26 173-203 50-75 (95)
349 TIGR00075 hypD hydrogenase exp 37.2 1.6E+02 0.0034 28.8 7.7 119 122-249 130-287 (369)
350 PTZ00106 60S ribosomal protein 37.2 58 0.0012 26.0 4.1 48 134-187 26-73 (108)
351 COG0569 TrkA K+ transport syst 37.1 90 0.0019 27.8 5.8 69 129-212 1-74 (225)
352 PRK04207 glyceraldehyde-3-phos 37.1 1.2E+02 0.0026 28.9 6.9 50 128-185 1-51 (341)
353 TIGR00524 eIF-2B_rel eIF-2B al 37.1 1.7E+02 0.0037 27.5 7.9 46 140-188 138-185 (303)
354 cd05213 NAD_bind_Glutamyl_tRNA 36.9 89 0.0019 29.1 6.0 71 127-214 177-248 (311)
355 COG0303 MoeA Molybdopterin bio 36.9 61 0.0013 31.9 5.1 91 102-213 155-251 (404)
356 PF07991 IlvN: Acetohydroxy ac 36.8 1E+02 0.0023 26.7 5.9 49 128-187 4-54 (165)
357 COG0037 MesJ tRNA(Ile)-lysidin 36.8 2.6E+02 0.0057 25.2 9.0 58 128-188 21-85 (298)
358 cd01422 MGS Methylglyoxal synt 36.7 90 0.0019 24.9 5.2 39 144-186 61-106 (115)
359 PRK04175 rpl7ae 50S ribosomal 36.6 61 0.0013 26.4 4.2 48 134-188 31-80 (122)
360 TIGR01269 Tyr_3_monoox tyrosin 36.6 1.9E+02 0.0042 29.0 8.4 65 41-108 38-106 (457)
361 PF02603 Hpr_kinase_N: HPr Ser 36.6 16 0.00035 29.7 0.8 61 127-188 47-112 (127)
362 PF02056 Glyco_hydro_4: Family 36.4 31 0.00067 30.2 2.6 76 130-211 1-80 (183)
363 PRK08334 translation initiatio 36.2 1.6E+02 0.0034 28.6 7.6 48 138-188 177-226 (356)
364 PRK11929 putative bifunctional 36.1 5.2E+02 0.011 27.9 12.4 133 64-214 320-473 (958)
365 cd01850 CDC_Septin CDC/Septin. 36.0 2.1E+02 0.0045 26.3 8.2 95 131-228 118-231 (276)
366 PRK07742 phosphate butyryltran 35.8 1.8E+02 0.004 27.1 7.9 79 127-213 14-99 (299)
367 cd05565 PTS_IIB_lactose PTS_II 35.8 67 0.0014 25.3 4.2 38 172-213 19-56 (99)
368 TIGR00670 asp_carb_tr aspartat 35.7 1.9E+02 0.0041 27.1 8.0 138 53-213 82-225 (301)
369 smart00851 MGS MGS-like domain 35.7 86 0.0019 23.4 4.7 38 144-185 46-89 (90)
370 TIGR03023 WcaJ_sugtrans Undeca 35.7 2.8E+02 0.0061 26.9 9.5 89 127-217 127-231 (451)
371 PRK11579 putative oxidoreducta 35.7 2.2E+02 0.0047 26.6 8.5 34 127-164 3-38 (346)
372 PRK06015 keto-hydroxyglutarate 35.5 3.2E+02 0.0069 24.2 11.2 116 45-210 7-123 (201)
373 cd00532 MGS-like MGS-like doma 35.2 91 0.002 24.4 5.0 29 43-72 2-30 (112)
374 PRK03562 glutathione-regulated 35.0 1.1E+02 0.0025 31.5 6.9 69 128-211 400-471 (621)
375 PRK14436 acylphosphatase; Prov 35.0 1.8E+02 0.004 22.3 6.5 60 100-163 17-76 (91)
376 PF07085 DRTGG: DRTGG domain; 34.9 41 0.00089 25.9 2.9 30 158-188 62-92 (105)
377 cd06296 PBP1_CatR_like Ligand- 34.9 2E+02 0.0042 24.8 7.6 71 99-188 14-85 (270)
378 PRK03659 glutathione-regulated 34.9 1E+02 0.0022 31.6 6.5 69 128-211 400-471 (601)
379 PF10741 T2SM_b: Type II secre 34.8 2.1E+02 0.0046 22.2 7.1 57 54-113 17-74 (110)
380 PF02700 PurS: Phosphoribosylf 34.7 1.9E+02 0.004 21.9 6.4 52 51-113 9-65 (80)
381 PRK14430 acylphosphatase; Prov 34.7 1.7E+02 0.0037 22.5 6.3 58 102-163 19-76 (92)
382 PRK00973 glucose-6-phosphate i 34.6 1.6E+02 0.0034 29.4 7.5 57 130-190 134-198 (446)
383 TIGR03022 WbaP_sugtrans Undeca 34.5 4.4E+02 0.0096 25.6 11.1 90 127-218 124-230 (456)
384 smart00226 LMWPc Low molecular 34.3 1.3E+02 0.0028 24.1 5.9 40 169-214 42-81 (140)
385 PRK05234 mgsA methylglyoxal sy 34.1 2.1E+02 0.0045 23.9 7.2 77 126-212 2-83 (142)
386 PRK12439 NAD(P)H-dependent gly 34.1 1.1E+02 0.0023 29.0 6.1 23 125-147 4-27 (341)
387 COG0499 SAM1 S-adenosylhomocys 33.9 1.2E+02 0.0025 30.0 6.2 59 155-213 69-129 (420)
388 TIGR01182 eda Entner-Doudoroff 33.8 3.4E+02 0.0074 24.1 11.3 117 44-210 10-127 (204)
389 PRK12727 flagellar biosynthesi 33.8 3.4E+02 0.0075 28.0 9.9 83 127-214 349-438 (559)
390 PRK08618 ornithine cyclodeamin 33.7 1E+02 0.0023 28.8 5.9 90 98-213 105-201 (325)
391 PRK07114 keto-hydroxyglutarate 33.6 3.6E+02 0.0078 24.3 11.9 121 44-210 17-138 (222)
392 PF14257 DUF4349: Domain of un 33.6 1.6E+02 0.0034 26.6 6.9 67 42-110 51-118 (262)
393 PRK13301 putative L-aspartate 33.5 1.1E+02 0.0023 28.6 5.8 31 128-161 2-34 (267)
394 COG1748 LYS9 Saccharopine dehy 33.4 1.6E+02 0.0034 29.0 7.2 72 128-212 1-76 (389)
395 TIGR00486 YbgI_SA1388 dinuclea 33.3 3.5E+02 0.0075 24.4 9.1 117 56-189 81-217 (249)
396 COG1254 AcyP Acylphosphatases 33.2 2.3E+02 0.005 22.0 6.9 60 100-163 17-76 (92)
397 KOG2655 Septin family protein 33.2 1.6E+02 0.0036 28.7 7.2 60 131-190 133-200 (366)
398 COG3007 Uncharacterized paraqu 33.1 3.3E+02 0.0072 26.3 9.0 94 123-218 36-147 (398)
399 PF12147 Methyltransf_20: Puta 33.1 2.5E+02 0.0054 26.8 8.2 89 124-218 132-223 (311)
400 PRK14444 acylphosphatase; Prov 33.1 2E+02 0.0043 22.1 6.5 59 101-163 18-76 (92)
401 PRK14427 acylphosphatase; Prov 33.1 1.8E+02 0.0039 22.4 6.2 59 101-163 20-78 (94)
402 PRK06928 pyrroline-5-carboxyla 33.0 1.5E+02 0.0032 27.1 6.7 15 128-142 1-16 (277)
403 PRK00045 hemA glutamyl-tRNA re 33.0 96 0.0021 30.2 5.7 69 127-212 181-250 (423)
404 PRK14438 acylphosphatase; Prov 33.0 1.7E+02 0.0037 22.4 6.0 60 101-164 17-76 (91)
405 PRK14441 acylphosphatase; Prov 32.8 1.9E+02 0.0041 22.2 6.3 59 101-163 19-77 (93)
406 PRK05925 aspartate kinase; Pro 32.7 1.8E+02 0.0038 28.9 7.6 61 41-114 371-433 (440)
407 PRK14433 acylphosphatase; Prov 32.7 1.5E+02 0.0033 22.5 5.6 59 102-164 16-74 (87)
408 TIGR03590 PseG pseudaminic aci 32.7 3.2E+02 0.007 24.8 8.9 79 128-213 170-250 (279)
409 PRK05479 ketol-acid reductoiso 32.5 1.4E+02 0.0031 28.5 6.7 46 127-183 16-63 (330)
410 TIGR00236 wecB UDP-N-acetylglu 32.4 3.8E+02 0.0082 24.7 9.5 81 129-213 1-95 (365)
411 COG2921 Uncharacterized conser 32.3 2.5E+02 0.0054 22.0 7.1 67 41-111 14-82 (90)
412 PF06877 RraB: Regulator of ri 32.3 1.7E+02 0.0036 22.4 6.0 79 37-116 20-98 (104)
413 PRK14440 acylphosphatase; Prov 32.3 2.1E+02 0.0047 21.8 6.5 59 101-163 17-75 (90)
414 PRK14429 acylphosphatase; Prov 32.2 2.1E+02 0.0046 21.8 6.5 59 101-163 16-74 (90)
415 cd01422 MGS Methylglyoxal synt 32.0 1.6E+02 0.0035 23.4 6.0 72 130-211 1-77 (115)
416 PRK14445 acylphosphatase; Prov 32.0 1.9E+02 0.0041 22.1 6.1 60 101-164 18-77 (91)
417 PRK07502 cyclohexadienyl dehyd 31.9 1.7E+02 0.0037 26.9 7.0 46 129-183 7-53 (307)
418 PRK09466 metL bifunctional asp 31.8 1.8E+02 0.004 31.2 8.0 82 42-138 317-401 (810)
419 cd05015 SIS_PGI_1 Phosphogluco 31.5 87 0.0019 26.2 4.5 57 128-189 73-138 (158)
420 COG0603 Predicted PP-loop supe 31.5 1.2E+02 0.0027 27.4 5.7 55 128-188 2-62 (222)
421 PRK14431 acylphosphatase; Prov 31.4 2E+02 0.0043 22.0 6.1 58 102-164 17-75 (89)
422 PRK06849 hypothetical protein; 31.4 3.2E+02 0.0069 25.9 8.9 36 127-165 3-38 (389)
423 PRK08291 ectoine utilization p 31.3 1.2E+02 0.0026 28.5 5.9 71 127-214 131-207 (330)
424 PRK13789 phosphoribosylamine-- 31.3 94 0.002 30.4 5.4 16 127-142 3-19 (426)
425 KOG3075 Ribose 5-phosphate iso 31.2 91 0.002 29.0 4.8 53 129-188 43-97 (261)
426 PRK14422 acylphosphatase; Prov 31.2 2.2E+02 0.0048 21.9 6.5 60 100-163 19-78 (93)
427 cd01995 ExsB ExsB is a transcr 31.2 3E+02 0.0065 22.6 8.9 79 130-214 1-86 (169)
428 TIGR03013 EpsB_2 sugar transfe 31.0 2E+02 0.0044 28.1 7.6 60 127-188 123-193 (442)
429 PRK14426 acylphosphatase; Prov 31.0 2.3E+02 0.005 21.7 6.5 60 100-163 17-77 (92)
430 cd01974 Nitrogenase_MoFe_beta 30.9 5.1E+02 0.011 25.2 10.9 92 52-188 311-402 (435)
431 COG0769 MurE UDP-N-acetylmuram 30.8 5.6E+02 0.012 25.7 11.9 50 96-150 305-354 (475)
432 PRK05234 mgsA methylglyoxal sy 30.8 1E+02 0.0023 25.7 4.8 39 144-186 66-111 (142)
433 PRK14437 acylphosphatase; Prov 30.7 1.9E+02 0.0042 23.1 6.2 58 100-161 36-93 (109)
434 PRK09496 trkA potassium transp 30.6 2.4E+02 0.0053 27.0 8.1 52 127-188 230-283 (453)
435 PF01008 IF-2B: Initiation fac 30.6 1.2E+02 0.0026 27.5 5.7 75 128-212 108-184 (282)
436 PF01451 LMWPc: Low molecular 30.6 1.3E+02 0.0029 24.0 5.4 42 169-215 46-87 (138)
437 TIGR03677 rpl7ae 50S ribosomal 30.5 1.3E+02 0.0028 24.2 5.2 47 134-188 27-76 (117)
438 PRK00025 lpxB lipid-A-disaccha 30.5 81 0.0018 29.2 4.6 17 198-214 77-95 (380)
439 PRK08655 prephenate dehydrogen 30.5 1.5E+02 0.0032 29.2 6.6 45 129-183 1-47 (437)
440 COG2257 Uncharacterized homolo 30.4 49 0.0011 26.0 2.5 15 172-186 36-50 (92)
441 PRK14451 acylphosphatase; Prov 30.4 2.1E+02 0.0045 21.8 6.1 59 101-163 17-75 (89)
442 TIGR02371 ala_DH_arch alanine 30.3 1.7E+02 0.0036 27.5 6.7 89 98-212 106-200 (325)
443 PF00679 EFG_C: Elongation fac 30.2 2.3E+02 0.005 21.1 7.6 63 44-115 8-70 (89)
444 PRK00094 gpsA NAD(P)H-dependen 30.2 2.2E+02 0.0047 25.9 7.4 19 128-146 1-20 (325)
445 COG0743 Dxr 1-deoxy-D-xylulose 30.1 2.6E+02 0.0056 27.5 7.9 54 128-187 1-56 (385)
446 PRK06823 ornithine cyclodeamin 30.0 1.7E+02 0.0036 27.6 6.6 74 127-214 127-202 (315)
447 PRK14442 acylphosphatase; Prov 29.9 2E+02 0.0043 22.0 6.0 60 101-164 18-77 (91)
448 TIGR03499 FlhF flagellar biosy 29.6 3.8E+02 0.0083 24.5 8.9 74 129-210 194-278 (282)
449 cd01424 MGS_CPS_II Methylglyox 29.6 1.3E+02 0.0028 23.2 5.0 38 145-186 59-100 (110)
450 COG0120 RpiA Ribose 5-phosphat 29.6 1.1E+02 0.0024 27.9 5.1 47 134-188 24-73 (227)
451 PF02142 MGS: MGS-like domain 29.6 31 0.00068 26.2 1.4 38 144-185 51-94 (95)
452 KOG0078 GTP-binding protein SE 29.3 1.8E+02 0.004 26.1 6.3 54 139-192 100-159 (207)
453 TIGR01921 DAP-DH diaminopimela 29.3 1.5E+02 0.0032 28.4 6.1 33 128-165 3-37 (324)
454 TIGR00959 ffh signal recogniti 29.2 5.7E+02 0.012 25.3 11.8 152 55-216 29-194 (428)
455 PRK14452 acylphosphatase; Prov 29.0 2.6E+02 0.0057 22.3 6.7 62 99-164 32-93 (107)
456 PRK15454 ethanol dehydrogenase 28.9 2.9E+02 0.0062 26.8 8.2 81 132-218 30-120 (395)
457 COG1828 PurS Phosphoribosylfor 28.9 1.8E+02 0.0039 22.4 5.4 55 48-113 7-66 (83)
458 PRK14450 acylphosphatase; Prov 28.6 2.5E+02 0.0055 21.3 6.3 60 101-163 16-75 (91)
459 PRK09084 aspartate kinase III; 28.5 2E+02 0.0044 28.4 7.2 60 41-113 383-445 (448)
460 TIGR01425 SRP54_euk signal rec 28.3 6E+02 0.013 25.2 10.5 152 54-215 29-193 (429)
461 COG1419 FlhF Flagellar GTP-bin 28.2 3.2E+02 0.0069 27.1 8.3 85 127-215 201-292 (407)
462 PRK15062 hydrogenase isoenzyme 28.2 2.5E+02 0.0055 27.4 7.5 117 123-248 125-280 (364)
463 PRK09496 trkA potassium transp 28.2 1.6E+02 0.0035 28.2 6.4 70 129-211 1-72 (453)
464 PRK09288 purT phosphoribosylgl 28.1 3.6E+02 0.0078 25.4 8.7 71 125-210 9-81 (395)
465 cd06299 PBP1_LacI_like_13 Liga 28.1 3.6E+02 0.0078 23.0 8.1 71 99-188 14-85 (265)
466 COG1064 AdhP Zn-dependent alco 28.0 2.6E+02 0.0056 27.0 7.6 100 90-211 134-236 (339)
467 TIGR02706 P_butyryltrans phosp 28.0 4.1E+02 0.009 24.6 8.9 78 127-212 12-95 (294)
468 cd06285 PBP1_LacI_like_7 Ligan 28.0 3.7E+02 0.008 23.1 8.1 73 98-189 13-86 (265)
469 cd01998 tRNA_Me_trans tRNA met 28.0 1.8E+02 0.0039 27.7 6.5 54 130-188 1-67 (349)
470 PRK14428 acylphosphatase; Prov 28.0 2.9E+02 0.0062 21.6 6.6 59 102-164 23-81 (97)
471 TIGR03316 ygeW probable carbam 27.8 4E+02 0.0088 25.7 8.9 31 176-214 225-255 (357)
472 PF02423 OCD_Mu_crystall: Orni 27.6 1.1E+02 0.0025 28.5 5.1 96 98-216 106-204 (313)
473 cd02001 TPP_ComE_PpyrDC Thiami 27.5 1.9E+02 0.0042 24.0 6.0 57 130-188 60-129 (157)
474 PRK06407 ornithine cyclodeamin 27.5 1.5E+02 0.0033 27.6 5.9 104 79-215 83-193 (301)
475 PRK07283 hypothetical protein; 27.4 1.1E+02 0.0023 23.8 4.1 49 134-188 19-67 (98)
476 TIGR01861 ANFD nitrogenase iro 27.3 3.8E+02 0.0082 27.2 9.0 166 42-218 202-412 (513)
477 PRK05772 translation initiatio 27.3 3.1E+02 0.0067 26.7 8.0 49 137-188 184-234 (363)
478 PRK14425 acylphosphatase; Prov 27.3 2.8E+02 0.0061 21.4 6.4 59 101-163 20-78 (94)
479 COG2403 Predicted GTPase [Gene 27.3 1.4E+02 0.0031 29.5 5.7 78 125-211 3-89 (449)
480 PRK13978 ribose-5-phosphate is 27.3 1.2E+02 0.0026 27.6 4.9 38 143-188 38-75 (228)
481 cd01078 NAD_bind_H4MPT_DH NADP 27.2 3.8E+02 0.0083 22.6 8.6 74 127-214 27-107 (194)
482 PRK07027 cobalamin biosynthesi 27.2 1.4E+02 0.0031 24.2 4.9 33 156-188 35-67 (126)
483 COG4087 Soluble P-type ATPase 27.0 2.2E+02 0.0048 24.2 6.0 54 158-213 46-101 (152)
484 PF02639 DUF188: Uncharacteriz 26.9 91 0.002 25.8 3.8 21 194-214 41-61 (130)
485 cd06283 PBP1_RegR_EndR_KdgR_li 26.9 4E+02 0.0086 22.7 8.1 73 98-189 13-86 (267)
486 cd05293 LDH_1 A subgroup of L- 26.9 2.5E+02 0.0054 26.4 7.2 79 127-216 2-84 (312)
487 KOG0781 Signal recognition par 26.9 5.5E+02 0.012 26.4 9.8 114 99-214 346-506 (587)
488 PF08660 Alg14: Oligosaccharid 26.8 3.7E+02 0.008 22.9 7.7 15 204-218 92-106 (170)
489 PRK05783 hypothetical protein; 26.6 3E+02 0.0065 21.1 6.9 60 43-113 3-67 (84)
490 cd01075 NAD_bind_Leu_Phe_Val_D 26.6 2.1E+02 0.0045 24.9 6.2 71 127-218 27-99 (200)
491 cd00115 LMWPc Substituted upda 26.6 1.1E+02 0.0024 24.7 4.3 81 129-215 1-87 (141)
492 CHL00123 rps6 ribosomal protei 26.6 3E+02 0.0064 21.3 6.5 42 52-94 23-73 (97)
493 COG1066 Sms Predicted ATP-depe 26.5 3E+02 0.0065 27.6 7.8 79 131-216 94-180 (456)
494 PF00391 PEP-utilizers: PEP-ut 26.5 48 0.001 24.6 1.9 48 157-212 30-77 (80)
495 TIGR03376 glycerol3P_DH glycer 26.5 2.5E+02 0.0055 26.8 7.2 86 130-218 1-96 (342)
496 TIGR00064 ftsY signal recognit 26.4 5.1E+02 0.011 23.7 10.5 60 127-188 70-134 (272)
497 COG3033 TnaA Tryptophanase [Am 26.4 1.2E+02 0.0026 30.0 5.0 46 140-186 172-224 (471)
498 cd08186 Fe-ADH8 Iron-containin 26.4 3.5E+02 0.0075 25.9 8.3 83 133-218 5-98 (383)
499 PLN00203 glutamyl-tRNA reducta 26.3 2.1E+02 0.0045 29.1 6.9 41 36-76 128-169 (519)
500 PRK14432 acylphosphatase; Prov 26.0 3.1E+02 0.0067 21.1 6.4 59 101-163 16-75 (93)
No 1
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=8.3e-57 Score=413.87 Aligned_cols=213 Identities=32% Similarity=0.559 Sum_probs=194.5
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh-hhhhhccceeeee
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR 121 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~-la~el~l~~~~~~ 121 (269)
++|||+|+|||||||+||++|+++|+||+|++|+.+..+|.|+|+++++.|+...+.++|+++|++ +++++++ + |+
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l-~--i~ 77 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEM-T--WE 77 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCC-E--EE
Confidence 479999999999999999999999999999999988778999999999998634789999999999 9999995 5 56
Q ss_pred ecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C--chHHHH
Q 024345 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--EREEEL 198 (269)
Q Consensus 122 ~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~e~~l 198 (269)
++..++++|||||+||+||||++|+++++.|.++++|++||||++ ++ ..+|+++|||+++++.+. + +.|.++
T Consensus 78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~---~~--~~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE---DL--RSLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh---hH--HHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 677888999999999999999999999999999999999999994 44 447999999999988432 2 235678
Q ss_pred HHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 199 LELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 199 ~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
++.++ ++|++|+||||||++ ++.|++|+|| +||||||+|||++|++||+.+|+++||+|+||||+
T Consensus 153 ~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iIN-----iHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e 222 (280)
T TIGR00655 153 LELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIIN-----IHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTE 222 (280)
T ss_pred HHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEE-----ecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcC
Confidence 88887 899999999999999 9999999999 99999999999999999999999999999999986
No 2
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=1.9e-56 Score=413.05 Aligned_cols=217 Identities=25% Similarity=0.432 Sum_probs=195.3
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE--eCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI--FDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~--~p~~~~~~~~L~e~L~~la~el~l 115 (269)
+.|.+++|||+|+|||||||+||++|+++|+||+|++|+.+...+.|+|++++. .|. +.+.++|+++|+++++++++
T Consensus 5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l~~~l~l 83 (289)
T PRK13010 5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPVAEKFDM 83 (289)
T ss_pred ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHHHHHhCC
Confidence 457789999999999999999999999999999999998545578999998887 454 67899999999999999995
Q ss_pred ceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C--
Q 024345 116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N-- 192 (269)
Q Consensus 116 ~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~-- 192 (269)
+| ++...+.++|||||+||+||||++|++++++|.++++|++||||++ + +.++|+++|||+++++.+. +
T Consensus 84 -~~--~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~---~--~~~~A~~~gIp~~~~~~~~~~~~ 155 (289)
T PRK13010 84 -QW--AIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP---D--LQPLAVQHDIPFHHLPVTPDTKA 155 (289)
T ss_pred -eE--EEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh---h--HHHHHHHcCCCEEEeCCCccccc
Confidence 54 5566678899999999999999999999999999999999999994 3 4699999999999988442 2
Q ss_pred chHHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEec
Q 024345 193 EREEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRT 267 (269)
Q Consensus 193 ~~e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~ 267 (269)
..|.++.+.++ ++|++|+|||||||+ ++.|++|+|| +||||||+|||++|++||+.+|+++||+|+||||
T Consensus 156 ~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiN-----iHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~ 230 (289)
T PRK13010 156 QQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAIN-----IHHSFLPGFKGARPYHQAHARGVKLIGATAHFVT 230 (289)
T ss_pred chHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCcee-----eCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEc
Confidence 23567888888 899999999999999 9999999999 9999999999999999999999999999999998
Q ss_pred c
Q 024345 268 F 268 (269)
Q Consensus 268 ~ 268 (269)
+
T Consensus 231 ~ 231 (289)
T PRK13010 231 D 231 (289)
T ss_pred C
Confidence 6
No 3
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=2.4e-55 Score=405.31 Aligned_cols=218 Identities=26% Similarity=0.449 Sum_probs=196.6
Q ss_pred CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (269)
Q Consensus 37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~ 116 (269)
+..|.++++||+|+||||||++||++|+++|+||++++|+...+.++|+|++++++|+ +.+.++|+++|+++|+++++
T Consensus 2 ~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l- 79 (286)
T PRK13011 2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGM- 79 (286)
T ss_pred CCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCc-
Confidence 3467899999999999999999999999999999999998666789999999999996 78899999999999999985
Q ss_pred eeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCC---c
Q 024345 117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---E 193 (269)
Q Consensus 117 ~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~---~ 193 (269)
++ +.....+++|||||+||+|+||++|+++++.|.++++|++|+||++ + +..+|+++|||+++++.+.. .
T Consensus 80 ~i--~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~---~--~~~lA~~~gIp~~~~~~~~~~~~~ 152 (286)
T PRK13011 80 QW--ELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP---D--LEPLAAWHGIPFHHFPITPDTKPQ 152 (286)
T ss_pred EE--EEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc---c--HHHHHHHhCCCEEEeCCCcCchhh
Confidence 54 4455667899999999999999999999999999999999999994 4 45569999999999873322 2
Q ss_pred hHHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 194 REEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 194 ~e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
.|.++.+.++ ++|++|+|||||||+ ++.|++|+|| +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus 153 ~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiN-----iHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~ 227 (286)
T PRK13011 153 QEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAIN-----IHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTD 227 (286)
T ss_pred hHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEE-----eccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcC
Confidence 3556778777 899999999999999 9999999999 99999999999999999999999999999999986
No 4
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=5e-55 Score=403.21 Aligned_cols=216 Identities=33% Similarity=0.579 Sum_probs=195.5
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEe-CCCCCCHHHHHHHHHhhhhhhccce
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF-DPIKWPREQMDEDFFKLSKMFNAMR 117 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~-p~~~~~~~~L~e~L~~la~el~l~~ 117 (269)
.|+++++||+|+||||||++||++|+++||||+|++++..+.+|.|.|+++++. |. +.+.++|+++|+++++++++ +
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~-~~~~~~L~~~L~~l~~~l~l-~ 80 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL-IFNLETLRADFAALAEEFEM-D 80 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHhCC-E
Confidence 467899999999999999999999999999999999987446889999999999 53 56799999999999999996 4
Q ss_pred eeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C--ch
Q 024345 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--ER 194 (269)
Q Consensus 118 ~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~ 194 (269)
+.++...+|+|||||+||+|+||++|+++++.|.++++|++|+||++ + +..+|+++|||+++++.+. + +.
T Consensus 81 --i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~---~--~~~lA~~~gIp~~~~~~~~~~~~~~ 153 (286)
T PRK06027 81 --WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD---D--LRSLVERFGIPFHHVPVTKETKAEA 153 (286)
T ss_pred --EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh---h--HHHHHHHhCCCEEEeccCccccchh
Confidence 45677889999999999999999999999999999999999999994 3 4556999999999987442 2 24
Q ss_pred HHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 195 EEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 195 e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
|.++.+.++ ++|++|+|||||||+ ++.|++|+|| +||||||+|||++|++||+.+|+++||||+|+||+
T Consensus 154 ~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiN-----iHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~ 227 (286)
T PRK06027 154 EARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIIN-----IHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTA 227 (286)
T ss_pred HHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCcee-----cCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcC
Confidence 567788887 899999999999999 9999999999 99999999999999999999999999999999986
No 5
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.9e-55 Score=395.88 Aligned_cols=217 Identities=34% Similarity=0.551 Sum_probs=202.4
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~ 118 (269)
.+.++++|+.|+|+||||++||++|+++||||.+.+|+.+..+|.|+||+++...+...+.++|+++|..++++|+ |.
T Consensus 4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~-m~- 81 (287)
T COG0788 4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFG-MD- 81 (287)
T ss_pred CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhC-ce-
Confidence 4578999999999999999999999999999999999977779999999999987644789999999999999998 55
Q ss_pred eeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC-CCCCc--hH
Q 024345 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE--RE 195 (269)
Q Consensus 119 ~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~-~~~~~--~e 195 (269)
|++..+..++||++|+|+.+|||.+||.+|+.|+|+++|++|||||++ ....++++|||++.++ .++++ .|
T Consensus 82 -~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~~~~IPfhhip~~~~~k~e~E 155 (287)
T COG0788 82 -WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVERFDIPFHHIPVTKENKAEAE 155 (287)
T ss_pred -eEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHHHcCCCeeeccCCCCcchHHH
Confidence 677889999999999999999999999999999999999999999975 6899999999999999 55543 46
Q ss_pred HHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 196 EELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 196 ~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
++++++++ ++|++|||+|||||+ +++|++++|| ||+||||+|.|++||++|+++|+|.+|+|.||+|.
T Consensus 156 ~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~g~iIN-----IHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT~ 228 (287)
T COG0788 156 ARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIIN-----IHHSFLPAFIGANPYHQAYERGVKLIGATAHYVTA 228 (287)
T ss_pred HHHHHHHHHhCCCEEeehhhHhhCCHHHHHhccCcEEE-----ecccccccCCCCChHHHHHhcCCeEeeeeeeeccC
Confidence 78899998 899999999999999 9999999999 99999999999999999999999999999999985
No 6
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=1.2e-51 Score=376.97 Aligned_cols=204 Identities=64% Similarity=1.057 Sum_probs=187.5
Q ss_pred HHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee-eeeecCCCCCeeEEEEEeC
Q 024345 59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS-VVRVPDIDPKYKVAVLASK 137 (269)
Q Consensus 59 VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~-~~~~~~~~~~~riav~~Sg 137 (269)
||++|+++|+||.+++|+.+..+|.|+||++++.++...+.++|+++|.+++++++ |.| .|+++..++++|||||+||
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~riavlvSg 79 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFK-ALKSVVRVPGLDPKYKIAVLASK 79 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcC-CcceEEEEccCCCCcEEEEEEcC
Confidence 58999999999999999988889999999999976323568999999999999998 544 8999999999999999999
Q ss_pred CchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCchHHHHHHHhccCCEEEEEeccee
Q 024345 138 QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENEREEELLELVQNTDFLVLARYMQV 216 (269)
Q Consensus 138 ~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~~e~~l~~~l~~~Dlivla~y~~i 216 (269)
+||||++|+++++.|+++++|++||||+++.+++++.++|+++|||+++++.+ .+++|+++++.++++|++|+||||||
T Consensus 80 ~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~I 159 (268)
T PLN02828 80 QDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQI 159 (268)
T ss_pred CChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehHh
Confidence 99999999999999999999999999997756789999999999999988843 34456678888889999999999999
Q ss_pred ee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 217 NR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 217 l~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
|+ ++.|++|+|| +||||||+|+|++|++||+++|++++|+|+||||+
T Consensus 160 L~~~~l~~~~~riIN-----IHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~ 209 (268)
T PLN02828 160 LSGNFLKGYGKDIIN-----IHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTE 209 (268)
T ss_pred CCHHHHhhccCCEEE-----ecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcC
Confidence 99 9999999999 99999999999999999999999999999999986
No 7
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=6e-39 Score=278.90 Aligned_cols=132 Identities=25% Similarity=0.317 Sum_probs=124.6
Q ss_pred eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCC----chHHHHHHHhc-
Q 024345 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ- 203 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~----~~e~~l~~~l~- 203 (269)
+||+||+||+|+||++|+++++.|.++++|++|+||+ ++|+++++|+++|||.+.++++.. .+|+++.+.++
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999 799999999999999999886642 24688888888
Q ss_pred -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
++|++|||||||||+ +++|++++|| +||||||+|+|.+.+++|+++|++++||||||||+
T Consensus 78 ~~~dlvvLAGyMrIL~~~fl~~~~grIlN-----IHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e 141 (200)
T COG0299 78 YGPDLVVLAGYMRILGPEFLSRFEGRILN-----IHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTE 141 (200)
T ss_pred cCCCEEEEcchHHHcCHHHHHHhhcceEe-----cCcccccCCCCchHHHHHHHcCCCccCcEEEEEcc
Confidence 899999999999999 9999999999 99999999999999999999999999999999996
No 8
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=1.7e-33 Score=246.06 Aligned_cols=132 Identities=20% Similarity=0.338 Sum_probs=121.4
Q ss_pred eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC----CchHHHHHHHhc-
Q 024345 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ- 203 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~e~~l~~~l~- 203 (269)
+|||||+||+|+|+++++++++++.++++|++||+|+ +++++.++|+++|||+++++.+. ..+|+++.+.++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~---~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECC---ccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 5899999999999999999999999999999999999 57899999999999999876332 123567888887
Q ss_pred -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
++|++|+++||+|++ ++.|+.|+|| +||||||+|||.+|++||+.+|+++||+|+|+||+
T Consensus 78 ~~~D~iv~~~~~~il~~~~l~~~~~~~iN-----iHpslLP~yrG~~p~~~ai~~g~~~tGvTih~v~~ 141 (190)
T TIGR00639 78 HEVDLVVLAGFMRILGPTFLSRFAGRILN-----IHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDE 141 (190)
T ss_pred cCCCEEEEeCcchhCCHHHHhhccCCEEE-----EeCCcccCCCCccHHHHHHHcCCCeEEEEEEEEcC
Confidence 899999999999999 9999999999 99999999999999999999999999999999986
No 9
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=3.8e-33 Score=246.92 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=118.1
Q ss_pred eEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC----CchHHHHHHHhc--
Q 024345 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-- 203 (269)
Q Consensus 130 riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~e~~l~~~l~-- 203 (269)
||+||+||+|+||++|++++++|.++++|++||||+ ++++++++|+++|||+++++.+. ..+++++.+.++
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~---~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNK---PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA 77 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeC---CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence 799999999999999999999999999999999999 68999999999999999987432 123567788887
Q ss_pred cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCC----cHHHHH-HHcCCCeeeEEEEEecc
Q 024345 204 NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGI----NISLSS-FDATIEWISLLKFRRTF 268 (269)
Q Consensus 204 ~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~----~p~~~A-~~~G~~~tG~Tvh~v~~ 268 (269)
++|++|+++||++++ ++.|+.|+|| +||||||+|||. .|++|+ +.+|+++||+|+|+||+
T Consensus 78 ~~Dliv~agy~~il~~~~l~~~~~~~iN-----iHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~ 145 (207)
T PLN02331 78 GVDFVLLAGYLKLIPVELVRAYPRSILN-----IHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDE 145 (207)
T ss_pred CCCEEEEeCcchhCCHHHHhhCCCCEEE-----EeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECC
Confidence 899999999999999 9999999999 999999999995 577776 66999999999999986
No 10
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-33 Score=241.47 Aligned_cols=134 Identities=21% Similarity=0.261 Sum_probs=123.5
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhhcCCC--CceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C---chHHHHHH
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLE 200 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l--~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---~~e~~l~~ 200 (269)
++.|+++++||.|+||++|+++++.|.+ ++.|+.||||+ .++..+++|+++|||+.++|.+. . ..+.++.+
T Consensus 5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~ 81 (206)
T KOG3076|consen 5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAE 81 (206)
T ss_pred cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHHH
Confidence 6789999999999999999999999999 79999999999 78999999999999999998642 1 23466776
Q ss_pred Hhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 201 LVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 201 ~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
.+. ++|++|||||||||+ ++.|+.++|| |||||||+|+|.+++++|+++|++.+|||+||++|
T Consensus 82 ~l~e~~~d~v~lAG~M~iLs~~fl~~~~~~iiN-----IHPaLlpaFkG~~a~k~Aleagv~~~GctvHfV~E 149 (206)
T KOG3076|consen 82 VLLELGTDLVCLAGYMRILSGEFLSQLPKRIIN-----IHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIE 149 (206)
T ss_pred HHHHhCCCEEEehhhHHHcCHHHHhhcccceEe-----cccccccccCCchHHHHHHHhccccccceEEEehh
Confidence 665 999999999999999 9999999999 99999999999999999999999999999999987
No 11
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=1e-32 Score=242.84 Aligned_cols=133 Identities=24% Similarity=0.335 Sum_probs=121.3
Q ss_pred CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C---chHHHHHHHhc
Q 024345 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ 203 (269)
Q Consensus 128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---~~e~~l~~~l~ 203 (269)
|+|||||+||+|+|+++++++++++.+.++|++||||+ +++.+.++|+++|||+++++... . .+++++.+.++
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~---~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 77 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD 77 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecC---ccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence 58999999999999999999999998889999999998 57889999999999999877322 1 23567788786
Q ss_pred --cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 204 --NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 204 --~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
++|++|+++|++|++ ++.|+.|+|| +||||||+|||.+|++||+.+|++++|+|+|+||+
T Consensus 78 ~~~~D~iv~~~~~~ii~~~~l~~~~~~~iN-----iHpslLP~yrG~~p~~~ai~~g~~~tG~Tvh~~~~ 142 (200)
T PRK05647 78 AYQPDLVVLAGFMRILGPTFVSAYEGRIIN-----IHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDE 142 (200)
T ss_pred HhCcCEEEhHHhhhhCCHHHHhhccCCEEE-----EeCccccCCCCccHHHHHHHcCCCeEEEEEEEEcC
Confidence 899999999999999 9999999999 99999999999999999999999999999999986
No 12
>PLN02285 methionyl-tRNA formyltransferase
Probab=99.97 E-value=8.3e-31 Score=246.77 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=119.5
Q ss_pred CCCCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchH
Q 024345 125 IDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENERE 195 (269)
Q Consensus 125 ~~~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e 195 (269)
.++++||+||||+.+ +||++|+++.+.|..+++|++|||++|+. ..+++.++|+++|||++++.......+
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 468899999999995 99999999888888789999999998752 125799999999999654321111224
Q ss_pred HHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 196 EELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 196 ~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
+++++.++ ++|++|+++||+||+ ++.|+.|+|| +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iN-----iHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~ 155 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVN-----IHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVR 155 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEE-----EecccccCCCCcCHHHHHHHcCCCcEEEEEEEECC
Confidence 45667676 899999999999999 9999999999 99999999999999999999999999999999986
No 13
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=99.96 E-value=1.4e-29 Score=218.84 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=112.9
Q ss_pred eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CC---chHHHHHHHhc-
Q 024345 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN---EREEELLELVQ- 203 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~---~~e~~l~~~l~- 203 (269)
|||+||+||++++++.++++++++...+++++|+|++ +......++.+.++|...+... .. ..++++.+.++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNP---DKPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESS---TTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccc---cccccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 7999999999999999999998887677899999999 4567789999999999887632 21 23567888887
Q ss_pred -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
++|++|+++|+++++ ++.|+.|+|| +||||||+|||++|++||+.+|++++|+|+|++|+
T Consensus 78 ~~~Dl~v~~~~~~il~~~~l~~~~~~~iN-----iHpslLP~yrG~~p~~~ai~~g~~~~G~Tvh~~~~ 141 (181)
T PF00551_consen 78 LNPDLIVVAGYGRILPKEFLSIPPYGIIN-----IHPSLLPKYRGASPIQWAILNGEKETGVTVHFMDE 141 (181)
T ss_dssp TT-SEEEESS-SS---HHHHHHSTTSEEE-----EESSSTTTTBSSTHHHHHHHHTSSEEEEEEEEE-S
T ss_pred hccceeehhhhHHHhhhhhhhcccccEEE-----EeecCCccCCCcchhhhhhcCCcceeeeEEEEecc
Confidence 999999999999999 9999999999 99999999999999999999999999999999986
No 14
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-28 Score=228.35 Aligned_cols=127 Identities=19% Similarity=0.174 Sum_probs=111.9
Q ss_pred CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHHH
Q 024345 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEEL 198 (269)
Q Consensus 128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l 198 (269)
++||+|||+.++ .+|++|++ .| ++|++|+|.+|+. ..++|.++|.++|||+++ |.+.+ ++++
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~---~~---~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-P~~l~--~~e~ 71 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIE---AG---HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-PEKLN--DPEF 71 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHh---CC---CceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-cccCC--cHHH
Confidence 589999999997 78999988 34 8999999999872 237899999999999887 43322 2256
Q ss_pred HHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 199 LELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 199 ~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
.+.++ ++|++|+++|++||+ |+.++.|||| +||||||+|||++|++|||.+|+++||+|+|+||+
T Consensus 72 ~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iN-----vH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~ 141 (307)
T COG0223 72 LEELAALDPDLIVVVAYGQILPKEILDLPPYGCIN-----LHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDE 141 (307)
T ss_pred HHHHhccCCCEEEEEehhhhCCHHHHhcCcCCeEE-----ecCccCccccCccHHHHHHHcCCcccceEEEEccc
Confidence 77776 899999999999999 9999999999 99999999999999999999999999999999986
No 15
>PRK06988 putative formyltransferase; Provisional
Probab=99.94 E-value=1.4e-26 Score=216.29 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=109.1
Q ss_pred CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCC----ChhHHHHHHhCCCCeEEeCCCCCchHHHHHHH
Q 024345 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (269)
Q Consensus 128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~ 201 (269)
||||+||||+.. .+|++|++. | ++|++|+|++|+.. .+++.++|+++|||++... +. .++++.+.
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~---~---~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~-~~--~~~~~~~~ 72 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR---G---VDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPA-DP--NDPELRAA 72 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC---C---CCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccc-cC--CCHHHHHH
Confidence 479999999984 799999873 4 68999999986521 2579999999999998733 11 23456667
Q ss_pred hc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 202 VQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 202 l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
++ ++|++|+++|++|++ ++.++.|+|| +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus 73 l~~~~~Dliv~~~~~~iip~~il~~~~~g~iN-----iHpslLP~yRG~~pi~~ai~~g~~~tGvTih~~~~ 139 (312)
T PRK06988 73 VAAAAPDFIFSFYYRHMIPVDLLALAPRGAYN-----MHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVA 139 (312)
T ss_pred HHhcCCCEEEEehhccccCHHHHhcCCCCEEE-----eeCccccCCCCcCHHHHHHHcCCCceEEEEEEECC
Confidence 76 899999999999999 8889999999 99999999999999999999999999999999986
No 16
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=99.93 E-value=4.4e-26 Score=212.83 Aligned_cols=126 Identities=14% Similarity=0.146 Sum_probs=108.0
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHHHH
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEELL 199 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~ 199 (269)
|||+||||+.. .+|++|++ .| ++|++|+|++|+. ..+++.++|+++|||++..... + +++.+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~---~~---~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~--~-~~~~~ 71 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRE---DN---FEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQ--R-QLEEL 71 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHh---CC---CcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCC--C-cHHHH
Confidence 69999999986 78888876 34 7899999998651 1357999999999999985422 1 22455
Q ss_pred HHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 200 ELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 200 ~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
+.++ ++|++|+++|++||+ ++.++.|+|| +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus 72 ~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iN-----iHpSlLP~yRG~~pi~wai~~G~~~tGvTih~~~~ 140 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGKILPKEFLDLFPYGCIN-----VHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVP 140 (313)
T ss_pred HHHHhhCCCEEEEccchhhCCHHHHhhccCCEEE-----ecCccccCCCCccHHHHHHHCCCCeEEEEEEEEcc
Confidence 5565 999999999999999 8999999999 99999999999999999999999999999999985
No 17
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=99.93 E-value=6.1e-26 Score=211.36 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=108.2
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHHHH
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEELL 199 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~ 199 (269)
|||+||||+.. .+|+.|+++ + +++++|+|.+++. ..+++.++|+++|||++... +.+ +.++.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~---~---~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~-~~~--~~~~~ 71 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES---G---HEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPE-KLR--DPEFL 71 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---C---CcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcC-CCC--CHHHH
Confidence 69999999986 799988863 3 6899999987641 13579999999999998743 211 34566
Q ss_pred HHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 200 ELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 200 ~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
+.++ ++|++|+++|+++|+ ++.++.|+|| +||||||+|||++|++||+.+|++++|+|+|+||+
T Consensus 72 ~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iN-----iHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~ 140 (309)
T PRK00005 72 AELAALNADVIVVVAYGQILPKAVLDIPRLGCIN-----LHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDE 140 (309)
T ss_pred HHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEE-----EeCcccccCCCccHHHHHHHcCCCeEEEEEEEECC
Confidence 6666 999999999999999 9999999999 99999999999999999999999999999999986
No 18
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.90 E-value=7.4e-24 Score=214.60 Aligned_cols=126 Identities=19% Similarity=0.108 Sum_probs=108.1
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC----CChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l 202 (269)
|||+||+|+.. .+|++|++ .| ++|++|+|.+|+. ..+++.++|+++|||++.... .+ +++.++.+
T Consensus 1 mkivf~g~~~~a~~~l~~L~~---~~---~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~-~~--~~~~~~~l 71 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLA---AG---YEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPED-VN--HPLWVERI 71 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHH---CC---CcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCC-CC--cHHHHHHH
Confidence 69999999986 78888886 34 7899999988651 124799999999999998542 11 33456666
Q ss_pred c--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 203 Q--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 203 ~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
+ +||++|+++|++||+ ++.++.|+|| +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus 72 ~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN-----~H~slLP~yRG~~p~~wai~~g~~~~GvTi~~~~~ 137 (660)
T PRK08125 72 RELAPDVIFSFYYRNLLSDEILQLAPAGAFN-----LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK 137 (660)
T ss_pred HhcCCCEEEEccccccCCHHHHhhcCCCEEE-----EeCCcccCCCCcCHHHHHHHcCCCcEEEEEEEECC
Confidence 6 999999999999999 8999999999 99999999999999999999999999999999985
No 19
>PRK07579 hypothetical protein; Provisional
Probab=99.86 E-value=1.4e-21 Score=176.80 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=96.9
Q ss_pred CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHH-hCCCCeEEeCCCCCchHHHHHHHhcc
Q 024345 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN 204 (269)
Q Consensus 128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~-~~gIP~~~~~~~~~~~e~~l~~~l~~ 204 (269)
|+||.|++...- .|++.|+++ .+.+.+++.|+.++.+. ++. -+++|.+.++. .+.+.+++.+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~ 65 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIAR--KNDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLDV-----AERVAEIVER 65 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhh--ccCcceEEEEeccCCcc--------cccccccccccCcch-----hhhHHhhhcC
Confidence 589999999883 899999987 45667999999988742 222 45666555541 2346677779
Q ss_pred CCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 205 TDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 205 ~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
+|++|+++|++||+ ++.+ ++|| +||||||+|||++|++||+.+|++ ||+|+|+||+
T Consensus 66 ~DliVvvayg~ilp~~iL~~~--~~iN-----iHpSLLP~yRGaaPi~wAI~nGe~-tGvTih~mde 124 (245)
T PRK07579 66 YDLVLSFHCKQRFPAKLVNGV--RCIN-----IHPGFNPYNRGWFPQVFSIINGLK-IGATIHEMDE 124 (245)
T ss_pred CCEEEEchhhccCCHHHHhhC--CEEE-----EcCCcCCCCCCcCHHHHHHHCCCe-EEEEEEEEcC
Confidence 99999999999999 7766 6999 999999999999999999999985 9999999986
No 20
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=99.69 E-value=1.3e-16 Score=119.97 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=65.5
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~ 116 (269)
++++++.|+||||||++||++|+++|+||+|++++.. ++.|+|++.++.|. .+.++|+++|+++++++++.
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~--~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l~ 71 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAIL--GTEFALTMLVEGSW--DAIAKLEAALPGLARRLDLT 71 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE--cCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCCE
Confidence 4789999999999999999999999999999999874 89999999999884 47899999999999999873
No 21
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=99.65 E-value=1.5e-16 Score=122.88 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=70.7
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~ 116 (269)
+++++|||+|+|||||||+||++|+++|+||+|++|+.+ .|.|+|.+.|+.|++..+..+++++|++-++++|+.
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE
Confidence 468999999999999999999999999999999999877 899999999999977899999999999999999975
No 22
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=4.5e-16 Score=116.13 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=64.1
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
+++|+|+||||||++||++|+++||||+++++... .+.|.|.+.+++|+ +.+.++|+++|+++++++++
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l 69 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGL 69 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999988755 68999999999997 67899999999999999986
No 23
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=8.4e-16 Score=114.06 Aligned_cols=72 Identities=35% Similarity=0.644 Sum_probs=65.4
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
+|++.|+||||||++||++|+++|+||.+++++.....+.|.|+++++.|+.+.+.++|+++|+++++++++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 72 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDM 72 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999998655678999999999996236899999999999999974
No 24
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.6e-16 Score=146.13 Aligned_cols=125 Identities=11% Similarity=0.023 Sum_probs=96.1
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCC-------CCChhHHHHHHhCCCCeEEeCCCCCchHHH
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDR-------GPNSHVIRFLERHGIPYHYLCAKENEREEE 197 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~-------~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~ 197 (269)
.++++-+++|... ..++.++.. .+.+.+++.++. ...+|+...|...|+++..+-... +.
T Consensus 5 ~~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~----k~ 73 (338)
T KOG3082|consen 5 IPLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGW----KN 73 (338)
T ss_pred cccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccChh----hc
Confidence 4567888888886 455666653 344556666543 123677788888888887654211 11
Q ss_pred HHHHhc-cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEec
Q 024345 198 LLELVQ-NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRT 267 (269)
Q Consensus 198 l~~~l~-~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~ 267 (269)
..++.. ++|++|.|.|+++++ |+.+++|+|| +||||||+|||++|+++|+++|+..||||+..++
T Consensus 74 ~~d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iN-----VHPSLLPk~RGaAPV~~all~GD~~TGVTI~~i~ 142 (338)
T KOG3082|consen 74 FHDLMRPDDQLAITASFGRLLPFKLLNQLPYGGIN-----VHPSLLPKYRGAAPVQRALLNGDTLTGVTIQTID 142 (338)
T ss_pred cccccCCCcceEEEeehhccCcHHHHhhCCcceee-----cChhhcccccCcchHHHHHhcCCcccceEEEEec
Confidence 113344 799999999999999 9999999999 9999999999999999999999999999999886
No 25
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=2.6e-15 Score=115.19 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=68.2
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeee
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~ 120 (269)
++++++.|+||||||++||++|+++||||++++++.. ++.|+|++++++|+.+.+.++|+++|+++++++++ +|.+
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l-~~~i 76 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV-KIRI 76 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC-EEEE
Confidence 4789999999999999999999999999999999764 78999999999994256799999999999999995 6554
No 26
>PRK00194 hypothetical protein; Validated
Probab=99.59 E-value=3.3e-15 Score=114.74 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=69.2
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~ 119 (269)
|.++++++.|+||||||++||++|+++|+||.++++... .+.|.+++.+++|..+.+.+.|+++|.++++++++ ++.
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~-~~~ 77 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGV-KIR 77 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC-EEE
Confidence 458999999999999999999999999999999999764 78999999999985346789999999999999995 554
Q ss_pred e
Q 024345 120 V 120 (269)
Q Consensus 120 ~ 120 (269)
+
T Consensus 78 ~ 78 (90)
T PRK00194 78 I 78 (90)
T ss_pred E
Confidence 4
No 27
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=99.58 E-value=1.3e-14 Score=108.69 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=66.7
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~----~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~ 119 (269)
++++.|+||||||++||++|+++|+||.++++.... ..+.|+|++++.+|+ +.+.++|+++|+.+++++++ ++.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~-~~~ 78 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNV-DIS 78 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcc-eEE
Confidence 478999999999999999999999999999997543 347999999999996 78899999999999999984 554
Q ss_pred e
Q 024345 120 V 120 (269)
Q Consensus 120 ~ 120 (269)
+
T Consensus 79 ~ 79 (81)
T cd04869 79 L 79 (81)
T ss_pred e
Confidence 3
No 28
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=99.57 E-value=6e-15 Score=110.60 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=62.3
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
++++||++|+||||||++||+.|+++||||+|+++... ++.|.+.+.++.|+ + +.++|+++|.++++++|+
T Consensus 1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~-~-~~~~l~~~L~~l~~~~~l 71 (76)
T PF13740_consen 1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPE-D-SLERLESALEELAEELGL 71 (76)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESH-H-HHHHHHHHHHHHHHHTT-
T ss_pred CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCc-c-cHHHHHHHHHHHHHHCCc
Confidence 36899999999999999999999999999999999765 79999999999995 3 789999999999999996
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.57 E-value=1.3e-14 Score=127.27 Aligned_cols=92 Identities=10% Similarity=0.004 Sum_probs=75.7
Q ss_pred cccccceecCC-CCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC--CC--CeEEEEEEEEeCCCCCC
Q 024345 24 SLKFPGEPIES-SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KK--NVFYSRSEFIFDPIKWP 98 (269)
Q Consensus 24 ~~~~~~~~~~~-~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~--~~--g~F~m~~~v~~p~~~~~ 98 (269)
.|.+.+.+... .......+|.++|+|+||||||++||++|+++|+||+++++...+ ++ .+|.|++++.+|+ +.+
T Consensus 76 ~L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~ 154 (190)
T PRK11589 76 DLLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQD 154 (190)
T ss_pred CeEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCC
Confidence 45566655322 233344479999999999999999999999999999999998643 23 4999999999997 888
Q ss_pred HHHHHHHHHhhhhhhccc
Q 024345 99 REQMDEDFFKLSKMFNAM 116 (269)
Q Consensus 99 ~~~L~e~L~~la~el~l~ 116 (269)
.++|+++|+++|+++++.
T Consensus 155 ~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 155 AANIEQAFKALCTELNAQ 172 (190)
T ss_pred HHHHHHHHHHHHHHhCce
Confidence 999999999999999973
No 30
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.50 E-value=2.4e-13 Score=119.21 Aligned_cols=105 Identities=13% Similarity=0.020 Sum_probs=81.5
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~ 118 (269)
.+++++||++|+||||||++||+.|+++||||+|+++... +|.|+|++.++.|. ...+.|+++|..+++++++..
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~--~~~~~le~~L~~l~~~~~L~i- 79 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSW--NAITLIESTLPLKGAELDLLI- 79 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCCh--hHHHHHHHHHHhhhhhcCeEE-
Confidence 4589999999999999999999999999999999999654 89999999998874 378999999999998887642
Q ss_pred eeeec-----CCC-CCeeEEEEEeCCchHHHHHHHh
Q 024345 119 VVRVP-----DID-PKYKVAVLASKQEHCLVDFLYG 148 (269)
Q Consensus 119 ~~~~~-----~~~-~~~riav~~Sg~g~~l~~ll~~ 148 (269)
.++.. ... .++.|-+.|..+..-..++-+.
T Consensus 80 ~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~ 115 (190)
T PRK11589 80 VMKRTTARPRPAMPATVWVQVEVADSPHLIERFTAL 115 (190)
T ss_pred EEEeccccccccCCceEEEEEEECCCCCHHHHHHHH
Confidence 33221 111 1367777777775444444433
No 31
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.32 E-value=3.8e-12 Score=109.11 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=76.9
Q ss_pred ccccceecCCCC-CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc--C--CCCeEEEEEEEEeCCCCCCH
Q 024345 25 LKFPGEPIESSV-SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--E--KKNVFYSRSEFIFDPIKWPR 99 (269)
Q Consensus 25 ~~~~~~~~~~~~-~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~--~--~~g~F~m~~~v~~p~~~~~~ 99 (269)
|.+-....+.-. +....+|++.|.|.||||||+++|++|.+||+||+++++... + ...+|.+.+.+.+|. +.+.
T Consensus 74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i 152 (176)
T COG2716 74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSI 152 (176)
T ss_pred eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcH
Confidence 344444444444 778899999999999999999999999999999999998742 3 345999999999997 8999
Q ss_pred HHHHHHHHhhhhhhcc
Q 024345 100 EQMDEDFFKLSKMFNA 115 (269)
Q Consensus 100 ~~L~e~L~~la~el~l 115 (269)
+.|+++|+++|+++++
T Consensus 153 ~~l~~~f~al~~~L~v 168 (176)
T COG2716 153 SALRDAFEALCDELNV 168 (176)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999999986
No 32
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.95 E-value=7.2e-10 Score=107.77 Aligned_cols=130 Identities=15% Similarity=0.051 Sum_probs=97.4
Q ss_pred eeEEEEEeCCchHHHHHHHhhh-cCCCCceEEEEeeCCCCC-CChhHHHHHHhCCCCeEEeC--CCCCchHHHHHHHhc-
Q 024345 129 YKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLC--AKENEREEELLELVQ- 203 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~~-~g~l~~~i~~Visn~~~~-~~~~v~~~a~~~gIP~~~~~--~~~~~~e~~l~~~l~- 203 (269)
||||+.+-.-+. ++.....+ +| ++|+.|+|-+|+. ..-+..--|++-|+|+...+ ++.+..-.+.+++.+
T Consensus 1 mkiaiigqs~fg--~~vy~~lrk~g---heiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~ 75 (881)
T KOG2452|consen 1 MKIAVIGQSLFG--QEVYCHLRKEG---HEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQA 75 (881)
T ss_pred CeeEEechhhhh--HHHHHHHHhcC---ceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHh
Confidence 688888765431 22222222 44 7999999987752 22345556889999999755 222221245666666
Q ss_pred -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345 204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF 268 (269)
Q Consensus 204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~ 268 (269)
++++=|+--..|.+| ++.+..|-|= .|||+||++||+++++|.+..|+++.|.++++.|.
T Consensus 76 ~gaelnvlpfcsqfip~ei~~ap~~~sii-----yhps~lp~hrgasainwtli~gd~~~g~sifwadd 139 (881)
T KOG2452|consen 76 LGAELNVLPFCSQFIPMEIISAPRHGSII-----YHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADD 139 (881)
T ss_pred hcccccccchhhhccchhhcccccCCcee-----eccccCccccCccccceEEEeccccCceEEEeecC
Confidence 899999999999999 7778888888 99999999999999999999999999999999873
No 33
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=98.95 E-value=6.8e-10 Score=85.14 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=58.0
Q ss_pred EEEEEcCC-CcChHHHHHHHHHhCCCeEeEeeeecc-------CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVP-------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 44 iItV~G~D-rpGIVa~VS~~La~~giNI~dl~~~~~-------~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
++||+|.| ++|+|++||++|+++|+||.++++... ...+...|.++++.| +.+.+.|+++|.++++++|+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~--~~~~~~lr~~L~~la~elgv 78 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ--PADLEALRAALLELASELNV 78 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC--CCCHHHHHHHHHHHhcccCc
Confidence 58999999 999999999999999999999998411 011355667777765 46899999999999999995
No 34
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.71 E-value=7e-08 Score=83.02 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=89.2
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeee
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~ 121 (269)
.++|+++|.||||++..+++..++.||||+++... ..++.|+..+.+..|.+ ..+.|++.|..+..+.|+. ..|.
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lisgs~d--av~~le~~l~~l~~~~~L~-v~m~ 79 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLISGSWD--AVTLLEATLPLLGAELDLL-VVMK 79 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEeeCHH--HHHHHHHHhhcccccCCeE-EEEe
Confidence 38999999999999999999999999999998773 45789999999998852 5799999999999988874 3444
Q ss_pred ecCCCC------CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCC--CCChhHHHHHHhCCCCeE
Q 024345 122 VPDIDP------KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPNSHVIRFLERHGIPYH 185 (269)
Q Consensus 122 ~~~~~~------~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~--~~~~~v~~~a~~~gIP~~ 185 (269)
.+...+ ++.+-+-+-.+...++++-+...... .+|.-..|..-. ..+++..-..-...+|.-
T Consensus 80 rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~--inie~L~~~~~~a~~s~~~lfha~it~~lPa~ 149 (176)
T COG2716 80 RTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHG--INIENLVSRTYPAPGSSAPLFHAQITARLPAN 149 (176)
T ss_pred ecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcC--CchhhceeeeeecCCCCccceehhhhccCCCc
Confidence 433222 23444444444455555544332332 344333443211 123334444444555544
No 35
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.70 E-value=8.7e-08 Score=67.92 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=47.2
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCC-eEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN-VFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g-~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
|.++|.++||||++++|+++|+++|+||..+.+.....+. .+.+....+ ..+.+.+.++|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD----EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE----GHGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC----CCCHHHHHHHHHccc
Confidence 5789999999999999999999999999999997543222 222233232 235677777777764
No 36
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=98.59 E-value=1.5e-07 Score=81.61 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=58.5
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~ 116 (269)
+.++++.+.|+||++++||++|+++|+||+++++.....+|.-. +.+.+|+.....++|++.|+++++.++..
T Consensus 2 ~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr--~TIvv~~~~~~ieqL~kQL~KLidVl~V~ 74 (174)
T CHL00100 2 KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISR--ITMVVPGDDRTIEQLTKQLYKLVNILKVQ 74 (174)
T ss_pred eEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccE--EEEEEECCHHHHHHHHHHHHHHhHhhEEE
Confidence 57899999999999999999999999999999996544455444 44445542223899999999999999764
No 37
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.47 E-value=1e-06 Score=65.85 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=52.0
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
...++.|.|.+.||||++++|++++++.|+||.+++.......+.+.+.+.+.+++ .++|..-+.+|-
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~ 70 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR 70 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence 45788999999999999999999999999999999997532267888899999884 566666555543
No 38
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=2.5e-06 Score=63.50 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=40.4
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~ 91 (269)
+|+|.|+||||++++|+++|+++|+||.+.+.... ++.+...+.|.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~ 47 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVR 47 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEE
Confidence 68999999999999999999999999999888643 67777777775
No 39
>PRK08577 hypothetical protein; Provisional
Probab=98.26 E-value=9.7e-06 Score=67.14 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=58.8
Q ss_pred CCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
..+.-..+.+++.+.|+||++++|++.|+++|+||.++++.....++.+.+.+.+++++...+.+++.+.|.++.
T Consensus 50 ~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~ 124 (136)
T PRK08577 50 ALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLE 124 (136)
T ss_pred CCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCC
Confidence 445557999999999999999999999999999999998864433567778888998852145566666666654
No 40
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=98.09 E-value=1.5e-05 Score=60.35 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=52.8
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
++++++...++||++++|++.++.+|.||+.++.......+...|.+.+... +...+++...|+++-+
T Consensus 2 ~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~KLid 69 (76)
T PRK06737 2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKKLIN 69 (76)
T ss_pred eEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhCCcC
Confidence 6789999999999999999999999999999998654455666776766532 3356667777766543
No 41
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.04 E-value=3.9e-05 Score=54.75 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=40.0
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~ 94 (269)
.++|.|+|+||++++++++|+++|+||.++.+... .+.....+.+..|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEECCC
Confidence 57899999999999999999999999999988643 33555666666554
No 42
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.02 E-value=3e-05 Score=54.95 Aligned_cols=64 Identities=23% Similarity=0.122 Sum_probs=47.5
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
.+.+.+.|+||+++++++.|+++|+||..+++...+.++.+.+.+++..++ ...+++.++|+++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~ 65 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD--DVIEQIVKQLNKL 65 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH--HHHHHHHHHHhCC
Confidence 477889999999999999999999999999885332456666777777541 2445555555554
No 43
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=2.3e-05 Score=56.61 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=45.1
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
+.+++..+|+||.++++++.|+++|+||..+.+...+..+.-.+++.++.++ +.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence 5788999999999999999999999999999765432111223345555442 45666666665
No 44
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=98.00 E-value=4e-05 Score=58.02 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=53.9
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
|+++++++...++||.+++|++.++.+|.||..++.......+.-.|.+.+. + +...+++...|+++-
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-ERPIDLLSSQLNKLV 68 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-CchHHHHHHHHhcCc
Confidence 4678999999999999999999999999999999996543445555666664 3 456788888777763
No 45
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=3e-05 Score=55.09 Aligned_cols=49 Identities=22% Similarity=0.134 Sum_probs=37.7
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC---CCCeEEEEEEEEeC
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFD 93 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~---~~g~F~m~~~v~~p 93 (269)
+.|..+|+||.+++|++.++++|+||.++.+.... ..+...+.+.+.++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 35788999999999999999999999999875321 13555556666654
No 46
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=3.9e-05 Score=55.92 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=47.5
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
+.|.++||||.+++|++.+++.|+||.++++... ..+...+.+.+.+++ .++|.+-+..+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~----~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPS----EEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCC----HHHHHHHHHHHh
Confidence 6789999999999999999999999999987532 246777778888774 555555555543
No 47
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.96 E-value=6.8e-05 Score=53.98 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=38.9
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p 93 (269)
.+.|.++||||++++++++|+++|+||.++..... ++.....+.+..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECC
Confidence 57899999999999999999999999999988643 3444556666544
No 48
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.96 E-value=4.7e-05 Score=55.62 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=41.9
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~ 94 (269)
.+.+.++|+||++++|++.|++.|+||..+++... ..+.+.+.++++..+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~ 51 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTST 51 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCc
Confidence 57899999999999999999999999999988532 246777888887664
No 49
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.91 E-value=4.8e-05 Score=58.62 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=53.8
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
+.+|++.-.|+||++++||..|+.+|.||..++.......|.-.|.+.+...+ ....+++...|+++-+=+
T Consensus 2 k~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-~~~ieqI~kQL~KlidVi 72 (84)
T PRK13562 2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-DTSLHILIKKLKQQINVL 72 (84)
T ss_pred cEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-HHHHHHHHHHHhCCccEE
Confidence 56899999999999999999999999999999986544456666777775333 334566777777665433
No 50
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89 E-value=9.7e-05 Score=53.25 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=47.6
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
|.+.+.+.|+||+++++++.|+++|+||..+.+.....++...+.+.+... +.+++++.++++.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHHc
Confidence 468899999999999999999999999999987432222555555655543 45666666666543
No 51
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=0.00014 Score=53.87 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=48.7
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
+.|.|.++||||+.+.++.+|+.+|.||.+.+.+.. ..|.=.=.+.|.-++ +.+.++|++++++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d~~-~~~~~~~~~~~~~ 65 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTGWK-RGETAALGHALQK 65 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEecCC-ccchHHHHHHHHH
Confidence 468899999999999999999999999999877643 234322245555443 5677888888876
No 52
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.86 E-value=8.5e-05 Score=58.60 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=55.1
Q ss_pred CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
+..+.+.+|++.-.|+||++++||..|+.+|.||+.++.......+.=.|.+.+. + +...+++...|+++-+=..
T Consensus 3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~KLidVik 77 (96)
T PRK08178 3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEKLEDVLK 77 (96)
T ss_pred CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhCCcCEEE
Confidence 4457789999999999999999999999999999999885332333334444444 3 3467777777777654443
No 53
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.84 E-value=7.3e-05 Score=53.96 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=44.4
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
+.+.++|+||+++++++.|+++|+||.++........+...+.+.++.+. ..++.++|.++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~----~~~~~~~l~~~ 62 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV----PDEVLEELRAL 62 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC----CHHHHHHHHcC
Confidence 46789999999999999999999999998764322345656666666542 34566656554
No 54
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.00019 Score=50.99 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=44.9
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
.+++.++|+||+++++++.|+++++||.++.+... .++.+.+.+.++-. ...+++.++|++..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~---~~~~~~~~~L~~~~ 64 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV---GDIEELVEELRSLP 64 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc---ccHHHHHHHHhCCC
Confidence 57889999999999999999999999999887533 23555555544422 24455556565543
No 55
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.76 E-value=0.00012 Score=50.20 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.3
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~ 94 (269)
+.+.++|+||+++++++.|+++++||.++..... ..+...+.+.+..+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC
Confidence 4678999999999999999999999999987532 235555677777764
No 56
>PRK04435 hypothetical protein; Provisional
Probab=97.74 E-value=0.00018 Score=60.69 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=53.4
Q ss_pred ccccccceecCCCCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 024345 23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (269)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~ 94 (269)
|..=+++.+. .....+.|++.+.|+||++++|.+.|+++|+||..++|.. +..|...+.+.++..+
T Consensus 55 kd~vf~~~~~-----~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~ 120 (147)
T PRK04435 55 KDYVFPFDEM-----VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSS 120 (147)
T ss_pred CCeeECcccc-----CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCC
Confidence 4455777665 5668899999999999999999999999999999999864 3356677777777664
No 57
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.73 E-value=0.00019 Score=50.51 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=44.2
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
+.+.++|++|+++++++.|+++|+||.++........+...+.+.++ . . ..+++.+.|.++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~--~-~-~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD--S-P-VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC--C-C-CCHHHHHHHHcC
Confidence 67889999999999999999999999999885332135555555553 2 2 455666666654
No 58
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.61 E-value=0.00026 Score=60.81 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
+.++++.-.|+||..++|++.|+++|+||..+........+...+.+.++.. +...+++...|+++-+=.
T Consensus 2 ~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~--~~~i~qi~kQl~KLidV~ 71 (161)
T PRK11895 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD--EQVIEQITKQLNKLIDVL 71 (161)
T ss_pred eEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC--HHHHHHHHHHHhccccEE
Confidence 5789999999999999999999999999999987544335666666666643 334677777777764433
No 59
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.60 E-value=0.00021 Score=52.77 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=43.6
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
.|.|.+.||+|++++|++.+++.|+||..+++.. . +. +.+++.+.+ .++|..-+.++-
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~--~-~~--i~l~i~v~~----~~~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP--K-GR--IYLNFPTIE----FEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec--C-Ce--EEEEeEecC----HHHHHHHHHHHh
Confidence 4778999999999999999999999999999853 2 33 567777663 455555444443
No 60
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.58 E-value=0.00056 Score=50.39 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=30.9
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.++|.++||||+.++++++|+++|+||.+....
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~ 35 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIF 35 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEE
Confidence 578999999999999999999999999998765
No 61
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.56 E-value=0.00046 Score=48.70 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=42.7
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
+++..+|+||+++++++.|+++|+||..+.+.....++...+. +.+.+ . +..++.++|+++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~-~-~~~~~i~~l~~~ 62 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQ-P-IDEEVIEEIKKI 62 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCC-C-CCHHHHHHHHcC
Confidence 6789999999999999999999999999977431123333333 44443 2 455666666654
No 62
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.001 Score=49.81 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.8
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~ 77 (269)
+.+.|.++||||+.++++++|+++|+||.+..-..
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T 35 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVST 35 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence 36899999999999999999999999999987753
No 63
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.54 E-value=0.00035 Score=59.77 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=53.7
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
+++++.-.|+||..++|++.|+++|+||..+........|...|.+.++.+ +...+++...|+++-+=+.
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d--~~~i~qi~kQl~Kli~V~~ 71 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD--DKVLEQITKQLNKLVDVIK 71 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcCccEEE
Confidence 689999999999999999999999999999987644335666677777653 3356777777777654443
No 64
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.54 E-value=0.0028 Score=66.53 Aligned_cols=71 Identities=13% Similarity=-0.035 Sum_probs=55.8
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CCHHHHHHHHHhhhhh
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSKM 112 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~-~~~~~L~e~L~~la~e 112 (269)
.....|+|+|+||||++++||++|+.+|+||.+.+.+. .+|.+..++.|.-|... ...+.++++|++....
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDG 668 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcC
Confidence 35568999999999999999999999999999999875 57888888888754321 2346677777765433
No 65
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.0012 Score=47.67 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
.+++..+|+||.++++++.|+++|+||..+........+.=.+.+.++.+ +.+.+.+.|.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHHC
Confidence 57788999999999999999999999999976432222332334444432 345677776653
No 66
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.0011 Score=47.62 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=40.9
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
..++|.-+|+||.+++|++.|+++|+||..+-.... .+. ..+.+... +.+.+.+.|.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~--~~~--~~~rl~~~----~~~~~~~~L~~ 59 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADT--SEF--GILRLIVS----DPDKAKEALKE 59 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec--CCC--CEEEEEEC----CHHHHHHHHHH
Confidence 357788999999999999999999999999976433 222 23333332 24566666655
No 67
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.0011 Score=48.77 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=43.1
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.++|..+||||+.++|+++|+++|+||........ ++.-.-.+.+.-++ +...+ .+.++++.+.+|
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~-~~~~~--~~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDAN-GNPVD--PKTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCC-CCcCC--HHHHHHHHHHhc
Confidence 57889999999999999999999999999877532 44322344443222 22111 134555555554
No 68
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.0011 Score=48.32 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=29.4
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
+++.=+|+||.++++++.|+++|+||..+.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~ 33 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA 33 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence 56788999999999999999999999999765
No 69
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.38 E-value=0.00032 Score=50.16 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=42.8
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
+.+.+.|+||.++++++.|+++|+||..++... ..+...+.++++.+ ..+++-+.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSE----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCC----CCHHHHHHHHc
Confidence 567899999999999999999999999986632 23665666666644 34555555554
No 70
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=97.38 E-value=0.00079 Score=48.84 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=46.4
Q ss_pred CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 51 DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
|+||++.+|++.+..+|.||..++.......+...+.+.+..+ +...+.|...|+++-+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhccCC
Confidence 7899999999999999999999999764456787888888764 3467888888887643
No 71
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.36 E-value=0.0006 Score=47.26 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=36.3
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~ 91 (269)
+++..+|+||.++++++.|+++|+||..+...... ++.-.+++.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence 45788999999999999999999999999875432 34555566555
No 72
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.35 E-value=0.0018 Score=48.34 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=46.9
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
.+.+.-+|+||..+++.+.++++|+||..+.+.... ..+.+.++++++.. .+.+.+.+.++.+.+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence 456667899999999999999999999999876432 23455556666532 345667777766654
No 73
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.32 E-value=0.0017 Score=47.81 Aligned_cols=47 Identities=23% Similarity=0.207 Sum_probs=34.9
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEE
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFI 91 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~ 91 (269)
+.+.-+|+||..++|-+.++++|+||..+.+..... .+.|..-++++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 345568999999999999999999999998864332 34444444444
No 74
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.27 E-value=0.00057 Score=72.15 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=50.3
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC--CCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~--~~g~F~m~~~v~~p~~~~~~~~L~e~L~ 107 (269)
......+++|.|+||||++++|+++|+++|+||.+.+..... ..+.|.++.....|..+...+.|+++|.
T Consensus 775 ~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred CCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 335678999999999999999999999999999998887543 2347777665555532112344444443
No 75
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.0006 Score=51.45 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=30.6
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
-+|+|.|+||||+.++|++.|+++|++|....-.
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~ 35 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID 35 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe
Confidence 3789999999999999999999999999986553
No 76
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.002 Score=48.24 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=30.9
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.+|.|.++||||+.++|+++|+++|++|....-.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs 35 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS 35 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe
Confidence 4789999999999999999999999999986654
No 77
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.13 E-value=0.003 Score=40.75 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.3
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~ 77 (269)
+++.++|++|+++++++.|+++|+||..+.+..
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 468899999999999999999999999998854
No 78
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.0027 Score=44.55 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=40.0
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
+++.=+|+||.++++++.|+++|+||..+.+......+.- ++.+.+.. .+.+.+.|++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~--~v~~~ve~----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKA--LLIFRTED----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeE--EEEEEeCC----HHHHHHHHHH
Confidence 6778899999999999999999999999877433212332 23444431 4555555554
No 79
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.83 E-value=0.023 Score=49.41 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=56.8
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeee
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~ 122 (269)
.-+++....+||...++|..++++|+||.-.+|+....+..-.+-|+++ + ..+++.|.+.+....--. ..+.
T Consensus 3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE--g-i~d~e~l~~~lks~d~v~-----ev~i 74 (218)
T COG1707 3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE--G-IDDFEKLLERLKSFDYVI-----EVEI 74 (218)
T ss_pred ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee--C-CCCHHHHHHHhhccceEE-----Eeee
Confidence 3578889999999999999999999999999998643222333445554 2 336788877776642111 1122
Q ss_pred cC---CCCCeeEEEEEeC
Q 024345 123 PD---IDPKYKVAVLASK 137 (269)
Q Consensus 123 ~~---~~~~~riav~~Sg 137 (269)
+. .-.-+||.+++.|
T Consensus 75 ~~sle~iyGKRvIiiGGG 92 (218)
T COG1707 75 HRSLEEIYGKRVIIIGGG 92 (218)
T ss_pred cchHHHHhCcEEEEECCc
Confidence 22 2233677777655
No 80
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.014 Score=44.04 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=30.2
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
++.|.+.||||+.++|++.|+++|++|....-.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~ 34 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFS 34 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence 688999999999999999999999999986654
No 81
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.72 E-value=0.007 Score=53.75 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=41.1
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p 93 (269)
....+-+.-.||||+|..|++.|.++||||..|+..-...+|.=.|.++++-|
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~ 199 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKN 199 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCC
Confidence 34566677799999999999999999999999988533335665667777643
No 82
>PRK07334 threonine dehydratase; Provisional
Probab=96.63 E-value=0.013 Score=56.81 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=53.0
Q ss_pred CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~---~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
.....+..|.|.+.||||++++|++.|++.++||.+++.... ...+...+.+.+.+.+ .++|.+-+.+|
T Consensus 321 ~~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~L 392 (403)
T PRK07334 321 VRAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAAL 392 (403)
T ss_pred HhCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHH
Confidence 445567899999999999999999999999999999987532 1356777888888774 45555544444
No 83
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=96.54 E-value=0.013 Score=61.30 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=56.5
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
..++.|.|.+.||+|++++|++++++.++||.++++......+.+.+.+.+.+++ .++|..-+..+-.--+
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~~i~~ 734 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLNQVPD 734 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999885332257788899999884 6666666666554444
No 84
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=96.49 E-value=0.0074 Score=43.77 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=29.5
Q ss_pred eEEEEEEcC----CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 42 ~~iItV~G~----DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
-..|+|.|+ |.||+++++++.|++.|+||..+++
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS 43 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISS 43 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEE
Confidence 356788888 8999999999999999999999985
No 85
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0049 Score=56.52 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
...++-+|.+.-.|.||++.+|+++|+.+|.||+.+-.-.......|.|.+.+.-.+ . -.++.++.+++|-.-+
T Consensus 73 qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd-~-VveQa~rQiedlVnV~ 146 (309)
T KOG2663|consen 73 QRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD-G-VVEQARRQIEDLVNVY 146 (309)
T ss_pred ccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH-H-HHHHHHHHHHHhhhhh
Confidence 455778999999999999999999999999999998775444567898888887543 2 3677777777765443
No 86
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.42 E-value=0.0079 Score=58.64 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=48.6
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
...++.|.+.-+|+||+|++||+.|+++|+||.+++..-. ++.=.|.++++-+ -.+++.+.++++.
T Consensus 335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~----~~~~~~~~i~~i~ 400 (409)
T PRK11790 335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDAD----YAEEALDALKAIP 400 (409)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCC----CcHHHHHHHHcCC
Confidence 4477889999999999999999999999999999977432 3443455555532 2456666666643
No 87
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.35 E-value=0.017 Score=41.90 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=39.6
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
++|.=+||||-..++.+.+++ |.||.+++..-.. .+.=...+.++.++ ....+++.++|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~-~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPD-REDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 357789999999999999999 9999999775321 22112233444443 2244555555544
No 88
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.27 E-value=0.008 Score=64.25 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=34.7
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~ 78 (269)
...+|.|.++||||++++|+++|+++|+||.+......
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~ 879 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY 879 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc
Confidence 45899999999999999999999999999999888643
No 89
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.22 E-value=0.029 Score=58.43 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=55.8
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
..++.|.|.+.||+|++++|++++++.++||.++++... ..+.+.+.+.+.+.+ .++|..-+..|-.--|
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr~i~~ 693 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIRVMPD 693 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCC
Confidence 567799999999999999999999999999999997532 246778888888874 5667666666654443
No 90
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=96.11 E-value=0.036 Score=57.59 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=56.1
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
..++.|.|.+.||+|++++|++++++.++||.++++... ..+.+.+.+.+.+.+ .++|..-+..+-.--+
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~ii~~L~~i~~ 677 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKN----YKHLLKIMLKIKTKND 677 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999999999998533 246778888888874 6777776666654333
No 91
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.10 E-value=0.074 Score=41.34 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=49.1
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
..+.+.-+|+||-.+++=+.|+++|+|+..+.+.... ..+.|..-++++.. +.+.++++|+++.+.++.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~----~~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK----SAPALDPIIKSLRNDIGA 84 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----CCHHHHHHHHHHHHHhCC
Confidence 4444445999999999999999999999999996432 22334433444422 237788888888887764
No 92
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=96.05 E-value=0.061 Score=46.36 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=66.8
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~ 119 (269)
+++-++++.-.|.||.++.+++.++.+|.||+.+..-.....+.=.|.+.+.. +....+++.+.|.++-+-++..+.+
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g--~~~~~EQi~kQL~kLidV~kV~d~~ 79 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG--DEQVLEQIIKQLNKLIDVLKVLDLT 79 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC--CcchHHHHHHHHHhhccceeEEEcC
Confidence 46778999999999999999999999999999998854333443334444443 2355899999999988877754321
Q ss_pred eeecCCCCCeeEEEEEeCCchH
Q 024345 120 VRVPDIDPKYKVAVLASKQEHC 141 (269)
Q Consensus 120 ~~~~~~~~~~riav~~Sg~g~~ 141 (269)
- ...-.+--..+.++..+..
T Consensus 80 ~--~~~veRel~LiKv~~~~~~ 99 (163)
T COG0440 80 S--EPHVERELALIKVSAEGSE 99 (163)
T ss_pred C--cchhheeeEEEEEecCccc
Confidence 0 1122333455566666544
No 93
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=95.88 E-value=0.048 Score=38.66 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=44.1
Q ss_pred EEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 44 iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.++++| +|+||+.+++.+.|++.|+||.-+.+.... .+ .+.+.+.++. .+.+...+.+.++.++++
T Consensus 3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~--~~~is~~v~~--~d~~~~~~~l~~~~~~~~ 69 (75)
T cd04913 3 KITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DG--TTDISFTVPK--SDLKKALAVLEKLKKELG 69 (75)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CC--cEEEEEEecH--HHHHHHHHHHHHHHHHcC
Confidence 345554 489999999999999999999988774321 22 2344455553 245556666777665665
No 94
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.87 E-value=0.059 Score=39.85 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=42.1
Q ss_pred EEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 46 tV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
.+.-+|+||-.+++=+.++++|+|+..+.+..... .+.|..-++++.. .+.++++++++.+
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~-----~~~~~~~l~~L~~ 65 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD-----RGDLDQLISSLRR 65 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC-----hHHHHHHHHHHHH
Confidence 34448999999999999999999999999964322 2444444555532 2446666666544
No 95
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.74 E-value=0.051 Score=57.18 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.8
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~ 78 (269)
...+|+|.|+||||++++||++|+++|+||.+......
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 56799999999999999999999999999999988644
No 96
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.67 E-value=0.3 Score=52.47 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=48.1
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEE-EEEEEeCCCC---C---CHHHHHHHHHhhh
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYS-RSEFIFDPIK---W---PREQMDEDFFKLS 110 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m-~~~v~~p~~~---~---~~~~L~e~L~~la 110 (269)
....|+|+|+||||+++.|+++|+.+|+||.+.+.+.. .+.|.+ .+.|.-+. + . ..+.|+++|....
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~--~dg~alD~F~V~~~~-g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT--TDGRALDTFWIQDAF-GRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe--cCCeEEEEEEEECCC-CCCCCCHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999987543 233443 35553332 2 1 2456777776654
No 97
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.60 E-value=0.086 Score=54.77 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=59.1
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
+....+.|.|.+.||+|+.++|+++|++.++||..+++... .++.+.|.+.+.+.+ ..+|..-+.++-+--+.
T Consensus 623 ~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~~~~~V 695 (701)
T COG0317 623 GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLKQLPDV 695 (701)
T ss_pred CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHhcCCCe
Confidence 56688899999999999999999999999999999999654 456777888888874 66677766666544443
No 98
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=95.59 E-value=0.064 Score=44.90 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred ccccccceecCCCCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHH
Q 024345 23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQM 102 (269)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L 102 (269)
|..-+|+-.+ -..+.+.+++.-.||.|+.+++=..+++.++||+-++|.+ |.+|.-...+.++......+.+.+
T Consensus 58 kD~vfpf~~m-----~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~i 131 (150)
T COG4492 58 KDFVFPFYDM-----LKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKI 131 (150)
T ss_pred ccceeehhhc-----ccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHHH
Confidence 3334555544 2236788889999999999999999999999999999974 567877777777654333344444
Q ss_pred HHHHH
Q 024345 103 DEDFF 107 (269)
Q Consensus 103 ~e~L~ 107 (269)
-+.|.
T Consensus 132 i~kl~ 136 (150)
T COG4492 132 IEKLR 136 (150)
T ss_pred HHHHh
Confidence 44443
No 99
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.51 E-value=0.064 Score=51.32 Aligned_cols=70 Identities=16% Similarity=-0.017 Sum_probs=47.5
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee---ccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF---VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~---~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
.....+.++|.=+||||..+++++.++++|+||.++... .....+.-...+.++..+ ..+.+++.+.|++
T Consensus 301 ~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~ 373 (380)
T TIGR01127 301 KSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD 373 (380)
T ss_pred hCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 345677999999999999999999999999999999653 111123333445555442 2234456666654
No 100
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.12 E-value=0.047 Score=54.90 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=45.3
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
....+-+.-.|+||+|+.|++.|+++++||..++..-...++.-.|.++++-+ .+ +++-+.+.++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~---v~-~~~l~~i~~~ 515 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDP---VP-EEVLEELRAL 515 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCC---CC-HHHHHHHhcC
Confidence 44455566799999999999999999999999987532234565666766633 22 4455555543
No 101
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.04 E-value=0.17 Score=37.21 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=46.6
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHhhh
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI---KWPREQMDEDFFKLS 110 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~---~~~~~~L~e~L~~la 110 (269)
+|||-|||+.|+=.++++.+.+.|.+|..-+... +|..-..+-.-+|.. .+.-+.|+..|.+.|
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT---DGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDST---DGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEeccccc---CCcEEEEEEEEecCCCCCcccHHHHHHHHHhcC
Confidence 6899999999999999999999999998765532 454433333333432 466788888887654
No 102
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.99 E-value=0.12 Score=49.91 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=37.1
Q ss_pred ceEEEEEEcC-CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEe
Q 024345 41 THGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (269)
Q Consensus 41 ~~~iItV~G~-DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~ 92 (269)
..+.+.+.=+ |+||.+++|++.|+++|+||.++.+. ....+.|.+.+++.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~-~~r~~~y~f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS-RTPAGELHFRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe-cccCceEEEEEEEec
Confidence 4555666666 99999999999999999999999983 222344444455553
No 103
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=94.98 E-value=0.18 Score=38.66 Aligned_cols=69 Identities=9% Similarity=-0.021 Sum_probs=58.4
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
|+.|-+++...++||.+.+|=++...+|.-+..++++....+|.-.+.+.|+.+ -.++-|...|+++-+
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~~lL~~QLeKl~D 69 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSVDLLTSQLEKLYD 69 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CChHHHHHHHHHHcc
Confidence 678999999999999999999999999999999998754456777777777755 368889999988644
No 104
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.74 E-value=0.056 Score=54.36 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=44.6
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
...+-+.-.|+||+|..|++.|.++++||..++..-...+|.-.|.++++-+ .+ +++.+.+.++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~---v~-~~~l~~i~~~ 514 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP---VP-DEVLEEIKAI 514 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC---CC-HHHHHHHhcC
Confidence 3455556699999999999999999999999887533334566666777643 22 4444445443
No 105
>PRK08198 threonine dehydratase; Provisional
Probab=94.53 E-value=0.092 Score=50.71 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=37.3
Q ss_pred CCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 35 ~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
........+.+.|.=+|+||..+++.+.+++.|+||.++++.
T Consensus 320 gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 320 GLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred hhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 344566778999999999999999999999999999999885
No 106
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=94.33 E-value=0.52 Score=50.03 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=72.4
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccce
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~ 117 (269)
.-..|+++|. ++||+.+++.+.|++.|+||.-++|... .-. +.+-++ .++...++..+-++|-.
T Consensus 395 ~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS----e~~--Is~vV~-----~~d~~~al~~LH~~f~~-- 461 (819)
T PRK09436 395 NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS----ERS--ISVVID-----NDDATKALRACHQSFFL-- 461 (819)
T ss_pred CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc----cce--EEEEEc-----HHHHHHHHHHHHHHHhc--
Confidence 4567999997 7899999999999999999999987321 112 333333 35577888888888853
Q ss_pred eeeeecCCCCCeeEEEEEeCC-chHHHHHHHhhh----cCCCCceEEEEe
Q 024345 118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ----EGKLPVEITCVI 162 (269)
Q Consensus 118 ~~~~~~~~~~~~riav~~Sg~-g~~l~~ll~~~~----~g~l~~~i~~Vi 162 (269)
..++++|+++|-|. |..+.++|...+ +..+..+|++|.
T Consensus 462 -------~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~ 504 (819)
T PRK09436 462 -------SDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA 504 (819)
T ss_pred -------ccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 23678999999998 777777765322 113456677653
No 107
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.21 E-value=0.17 Score=48.33 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=35.5
Q ss_pred CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
......+.+.|.-+||||.++++++.|++.|+||.|+.-.
T Consensus 285 ~~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~ 324 (359)
T PRK06545 285 GAIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL 324 (359)
T ss_pred CCCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence 3445778899999999999999999999999999999874
No 108
>PRK06382 threonine dehydratase; Provisional
Probab=94.19 E-value=0.21 Score=48.46 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=47.8
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee-c--cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF-V--PEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~-~--~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
......++|.=+|+||.++++++.|+++|+||.++... . ....+.-.+.+.++..+ ..+.+++.+.|++.
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~~ 399 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALREM 399 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence 45677899999999999999999999999999988763 1 11223333455555442 12334666666653
No 109
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.17 E-value=0.11 Score=42.90 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=71.2
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeee
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~ 121 (269)
--|+|.-..+||-.+.++..|.++|+||..++- ..+|.|- +||.|+-| ++-...|++.+ . +.+
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~ti---Adt~dFGIiRmvV~~~------d~A~~~Lee~g----F---~Vr 67 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTI---ADTGDFGIIRMVVDRP------DEAHSVLEEAG----F---TVR 67 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEe---ccccCcceEEEEcCCh------HHHHHHHHHCC----c---EEE
Confidence 357889999999999999999999999999977 4468885 57777654 33345555432 1 122
Q ss_pred ecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCce-EEEEeeCCCCC-------CChhHHHHHHhCCCCeE
Q 024345 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE-ITCVISNHDRG-------PNSHVIRFLERHGIPYH 185 (269)
Q Consensus 122 ~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~-i~~Visn~~~~-------~~~~v~~~a~~~gIP~~ 185 (269)
.++ =+||=.-.....|..+++....-.++.+ +.+.++.+++. .--.+++..+.+|||+.
T Consensus 68 ~~d-----VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~ 134 (142)
T COG4747 68 ETD-----VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKLI 134 (142)
T ss_pred eee-----EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCeec
Confidence 221 2333333333344444444334444433 23333332210 01235666778888876
No 110
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.14 E-value=0.67 Score=34.57 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=42.7
Q ss_pred EcCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 48 ~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
.-+|+||-.+++=+.++.+|+|+..+.+..... .+.|..-++++.. .+.++++++++.+..
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~-----~~~i~~~l~~l~~~~ 67 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD-----QRRLDELVQLLKREV 67 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-----HHHHHHHHHHHHHhc
Confidence 348999999999999999999999999964322 2334433444422 246777777775543
No 111
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=93.95 E-value=0.47 Score=32.18 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=29.8
Q ss_pred EEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 44 iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.|+++|. +++|+++++.+.|+++++++.-+.+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 5788887 88999999999999999999999874
No 112
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.89 E-value=0.09 Score=56.14 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc--CCCCeEEE
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKKNVFYS 86 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~--~~~g~F~m 86 (269)
......+|.|.++||||+.++|+++|+++|+||....-... .-.+.|.+
T Consensus 804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV 854 (884)
T PRK05007 804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIL 854 (884)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE
Confidence 33567799999999999999999999999999998655432 12246664
No 113
>PRK11899 prephenate dehydratase; Provisional
Probab=93.88 E-value=0.53 Score=43.85 Aligned_cols=69 Identities=10% Similarity=-0.014 Sum_probs=47.4
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
+..+-+.-+|+||-.+++=+.|+++|+|+..+.+.... ..+.|..-++++. ..+-..++++|+++.+..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg---~~~d~~v~~aL~~l~~~~ 263 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG---HPEDRNVALALEELRFFS 263 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC---CCCCHHHHHHHHHHHHhc
Confidence 34444444899999999999999999999999997432 2244443444443 223456788888876543
No 114
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.86 E-value=0.47 Score=38.48 Aligned_cols=64 Identities=6% Similarity=0.034 Sum_probs=43.3
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
..+.+.-+|+||-.+++=+.++.+|+|+..+.+.... ..+.|..-++++.. .+.+..+++.+..
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~-----~~~~~~aL~~L~~ 106 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH-----RSDLLQLISSLRQ 106 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC-----HHHHHHHHHHHHH
Confidence 4444445999999999999999999999999996432 23444434555432 2346666666644
No 115
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=93.83 E-value=0.5 Score=33.54 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=40.4
Q ss_pred EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
..|+++|. ++||+.+++.++|++.|+|+...++ ..- .+.+-++ .++..+++..+-++|.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~------Se~--~is~~v~-----~~~~~~av~~Lh~~f~ 63 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD------SHT--TISCLVS-----EDDVKEAVNALHEAFE 63 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc------Ccc--EEEEEEc-----HHHHHHHHHHHHHHhc
Confidence 36889997 8999999999999999999975543 111 2223333 2455666666666653
No 116
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.72 E-value=0.34 Score=47.48 Aligned_cols=69 Identities=10% Similarity=-0.059 Sum_probs=48.1
Q ss_pred CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
.....+|.|.+...|+||..++|++.|+++|+||..+.|.... .+.-.+.+..+. .+..++++.++++.
T Consensus 343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~-~~~~~ivivT~~----~~e~~l~~~i~~L~ 411 (426)
T PRK06349 343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAG-GEGAEIVIVTHE----TSEAALRAALAAIE 411 (426)
T ss_pred HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCC-CCceeEEEEEEe----CCHHHHHHHHHHHh
Confidence 3456679999999999999999999999999999999886321 122222233332 23456666665554
No 117
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=93.59 E-value=0.55 Score=42.44 Aligned_cols=80 Identities=26% Similarity=0.294 Sum_probs=53.5
Q ss_pred eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCC--------Ch-hHHHHHHhCCCCeEEeCCCC-CchH-HH
Q 024345 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NS-HVIRFLERHGIPYHYLCAKE-NERE-EE 197 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~--------~~-~v~~~a~~~gIP~~~~~~~~-~~~e-~~ 197 (269)
||++.|.||.--...++..+++.| ++|.++++-+|..+ |. .+.-.|+..|||+....... .++| ++
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 578888888753344777788787 67877776665433 22 25666999999999877432 1222 56
Q ss_pred HHHHhc--cCCEEEEE
Q 024345 198 LLELVQ--NTDFLVLA 211 (269)
Q Consensus 198 l~~~l~--~~Dlivla 211 (269)
+.++++ ++|.||.-
T Consensus 78 L~~~l~~l~~d~iv~G 93 (223)
T COG2102 78 LKEALRRLKVDGIVAG 93 (223)
T ss_pred HHHHHHhCcccEEEEc
Confidence 667777 78888763
No 118
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.55 E-value=0.46 Score=35.41 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=27.6
Q ss_pred EEEE--E-cCCCcChHHHHHHHHHhCCCeEeEeee
Q 024345 44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 44 iItV--~-G~DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
.|++ . .+++||..++|-+.|+++|+||.-+.|
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 4555 2 368899999999999999999999987
No 119
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=93.51 E-value=0.37 Score=41.56 Aligned_cols=47 Identities=21% Similarity=-0.018 Sum_probs=33.2
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~ 91 (269)
++..-.+.|||+|+|++.++++||+|.+.-.......+.=.+++..+
T Consensus 98 i~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte 144 (167)
T COG2150 98 IYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTE 144 (167)
T ss_pred EEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEe
Confidence 34445678999999999999999999998775432334333344444
No 120
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=93.49 E-value=0.64 Score=32.36 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=29.6
Q ss_pred EEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 44 iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.|+++|. |.||+.+++.+.|++.|+|+.-+++.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~ 38 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQG 38 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 5788885 88999999999999999999988773
No 121
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.40 E-value=0.49 Score=50.49 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=33.5
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~ 77 (269)
....|.|.++||||+.++|+++|+.+|+||.+..-..
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 5678999999999999999999999999999976653
No 122
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.34 E-value=0.75 Score=32.22 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=30.1
Q ss_pred EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
..|+++|. ++||+.+++.+.|+++|+|+.-++|.
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~ 38 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQG 38 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 36788887 78999999999999999999988873
No 123
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.27 E-value=0.13 Score=54.81 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=33.9
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.....+|.|.++||||+.+.|+++|+++|++|....-.
T Consensus 780 s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~ 817 (854)
T PRK01759 780 KQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKIT 817 (854)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEc
Confidence 34678999999999999999999999999999986554
No 124
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.26 E-value=0.45 Score=50.72 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=38.4
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~ 91 (269)
....|+|+++||||+.++|+++|+.+|+||.+..-... .+|...=.+.|.
T Consensus 676 ~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~ 725 (854)
T PRK01759 676 GGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVT 725 (854)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEe
Confidence 45588999999999999999999999999999875422 245443345554
No 125
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.03 E-value=0.51 Score=50.51 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=38.6
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~ 91 (269)
....|+|+++||||+.+.|+++|+.+|+||.+..-+.. ..|...=.+.|.
T Consensus 700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V~ 749 (884)
T PRK05007 700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIVL 749 (884)
T ss_pred CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEEE
Confidence 46689999999999999999999999999999875432 235443344443
No 126
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.87 E-value=0.49 Score=35.79 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.3
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.++.|.=+||||-.+++++.|+ +.||.+....
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~ 33 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYR 33 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence 4678889999999999999999 7788877664
No 127
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.62 E-value=1.1 Score=31.17 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=41.2
Q ss_pred EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
..++++|. +++|+.+++.+.|+++|+|+.-+++... + ..+.+.+|. ++..++.+.+-++|
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s---~---~~isf~i~~-----~~~~~~~~~Lh~~~ 64 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS---E---YNISFVVAE-----DDGWAAVKAVHDEF 64 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc---c---ceEEEEEeH-----HHHHHHHHHHHHHh
Confidence 46788886 7899999999999999999999887421 1 344455553 33444444444444
No 128
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=92.52 E-value=0.48 Score=50.76 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=38.7
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~ 91 (269)
....|+|+++||||+.+.++++|+.+|+||.+.+-+.. ..|...=.+.|.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~ 752 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVL 752 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEe
Confidence 45588999999999999999999999999999876432 245433355554
No 129
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=92.17 E-value=0.85 Score=48.92 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=33.9
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~ 78 (269)
....|.|.+.||||+.++|+++|+++|+||.+..-...
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~ 850 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL 850 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec
Confidence 45689999999999999999999999999999876543
No 130
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.95 E-value=0.51 Score=44.53 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=45.5
Q ss_pred CCeeEEEEEeCC-chH-HHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHH--h
Q 024345 127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--V 202 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~-l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~--l 202 (269)
+++||||+|+|. |+. +..+++ .+ ..++++|+... +++..+++|+++|+|+.+-+ . +++++. +
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~---~~--~velvAVvdid---~es~gla~A~~~Gi~~~~~~-----i-e~LL~~~~~ 68 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR---SE--HLEPGAMVGID---PESDGLARARRLGVATSAEG-----I-DGLLAMPEF 68 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc---CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCcccCC-----H-HHHHhCcCC
Confidence 468999999998 554 334333 22 37888887754 45567788999999986521 1 234432 1
Q ss_pred ccCCEEEEEe
Q 024345 203 QNTDFLVLAR 212 (269)
Q Consensus 203 ~~~Dlivla~ 212 (269)
.++|+++.+.
T Consensus 69 ~dIDiVf~AT 78 (302)
T PRK08300 69 DDIDIVFDAT 78 (302)
T ss_pred CCCCEEEECC
Confidence 2567766643
No 131
>PRK04374 PII uridylyl-transferase; Provisional
Probab=91.86 E-value=1 Score=48.16 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=34.6
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~ 78 (269)
....+|+|.+.||||+.++|+++|+++|+||.+..-...
T Consensus 794 ~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 794 GRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred CCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 366799999999999999999999999999999776543
No 132
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=91.80 E-value=0.89 Score=33.41 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=28.0
Q ss_pred EEEEEEc---CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 43 ~iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
..++++| .+.+|+++++.+.|+++|+|+.-+.+
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 3567765 47899999999999999999988865
No 133
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=91.73 E-value=1.1 Score=44.35 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=47.1
Q ss_pred CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh---ccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhh
Q 024345 80 KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF---NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQ 150 (269)
Q Consensus 80 ~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el---~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~ 150 (269)
..|.|-+.++---|+ ....|...|+++-+.| |+.+-....+-...|.+|+|..|.+|.-+++++.-++
T Consensus 87 ~rG~YQi~~~~~~p~---G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~ 157 (440)
T COG1570 87 PRGDYQIVAESMEPA---GLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLS 157 (440)
T ss_pred CCCceEEEEecCCcC---ChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHH
Confidence 467776555544454 5677888888876554 3444344455566778999999999999999987543
No 134
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.28 Score=51.76 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=34.6
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
......+++|.|.||||+.++|+++|++++.+|....-+
T Consensus 787 ~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkIt 825 (867)
T COG2844 787 ASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT 825 (867)
T ss_pred cCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeec
Confidence 334688999999999999999999999999999987664
No 135
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=91.59 E-value=3 Score=44.39 Aligned_cols=101 Identities=3% Similarity=-0.008 Sum_probs=70.7
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccce
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~ 117 (269)
.-.+|+++|. .++|+.+++.+.|++.++|+....+ +...+.+.| + .++..+++..+-++|-.
T Consensus 390 ~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~------s~~sis~vV--~-----~~d~~~av~~LH~~f~~-- 454 (810)
T PRK09466 390 GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSE------DGLSLVAVL--R-----QGPTESLIQGLHQSLFR-- 454 (810)
T ss_pred CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeC------CCcEEEEEE--e-----hHHHHHHHHHHHHHHhC--
Confidence 4457999996 6899999999999999999977654 222333333 3 35677888888888842
Q ss_pred eeeeecCCCCCeeEEEEEeCC-chHHHHHHHhhhc-----CCCCceEEEEee
Q 024345 118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-----GKLPVEITCVIS 163 (269)
Q Consensus 118 ~~~~~~~~~~~~riav~~Sg~-g~~l~~ll~~~~~-----g~l~~~i~~Vis 163 (269)
..+..+|+++|-|+ |..+.++|...++ -.+..+|++|..
T Consensus 455 -------~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 455 -------AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred -------cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 23568999999999 6777777654321 124566777753
No 136
>PRK08526 threonine dehydratase; Provisional
Probab=91.56 E-value=0.77 Score=44.76 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=35.3
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.....+.+.|.=+||||-.+++++.+++.+.||.+++..
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~ 360 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYD 360 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEE
Confidence 356778899999999999999999999999999999774
No 137
>PRK04374 PII uridylyl-transferase; Provisional
Probab=91.55 E-value=6 Score=42.48 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=45.7
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCC---CHHHHHHHHHh
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKW---PREQMDEDFFK 108 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~---~~~~L~e~L~~ 108 (269)
....|+|+++||||+.+.++++|+.+|+||.+..-+.. ..|.-.=.+.|.-|. +. ....++++|.+
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~~~~-~~~~~~~~~i~~~l~~ 757 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVLPQD-TYADGDPQRLAAALRQ 757 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEeCCC-CCChHHHHHHHHHHHH
Confidence 45578999999999999999999999999999877643 245433355555443 22 13335555554
No 138
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.37 E-value=1.4 Score=31.41 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=40.9
Q ss_pred EEEEEEcC--CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 43 ~iItV~G~--DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
..++++|. ..+|+.+++-+.|++.|+|+.-+++... .-. +.+-++ .++..+++..+-++|
T Consensus 2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s----~~s--is~~v~-----~~~~~~av~~Lh~~f 63 (65)
T cd04918 2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS----KVN--ISLIVN-----DSEAEGCVQALHKSF 63 (65)
T ss_pred cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc----cce--EEEEEe-----HHHHHHHHHHHHHHH
Confidence 47889997 4689999999999999999998887321 112 222233 244556666665554
No 139
>PRK03059 PII uridylyl-transferase; Provisional
Probab=91.30 E-value=1.3 Score=47.32 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=39.5
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p 93 (269)
....|+|+++||||+.+.++++|+.+|+||.+..-+.. ..|.-.=.+.|.-|
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~~ld~f~V~~~ 728 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGYALDTFQVLDP 728 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCeEEEEEEEeCC
Confidence 45588999999999999999999999999999877533 24543334555434
No 140
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=91.19 E-value=0.71 Score=46.37 Aligned_cols=90 Identities=16% Similarity=0.257 Sum_probs=57.2
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeec
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~ 123 (269)
.+.|+|.||.||+.+|...|+.+++|+..+... + .|..+ +..| ..+++.+++-+.++..--|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~--~-~~~~~----~~~~--~~~~~~~~~~~~~~~~~~g--------- 63 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--P-IGRIY----LNFA--ELEFESFSSLMAEIRRIAG--------- 63 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc--C-CCeEE----EeCC--CcChhhHHHHHHHHhcCCC---------
Confidence 478999999999999999999999999999873 2 24322 2333 3455555444444321111
Q ss_pred CCCCCeeEEEEEeCCc-hHHHHHHHhhhcC
Q 024345 124 DIDPKYKVAVLASKQE-HCLVDFLYGWQEG 152 (269)
Q Consensus 124 ~~~~~~riav~~Sg~g-~~l~~ll~~~~~g 152 (269)
-..-..|.++-+-+- .-|+++++.+.+|
T Consensus 64 -v~~~~~~~~~~~e~e~~~L~aIL~sm~eG 92 (520)
T PRK10820 64 -VTDVRTVPFMPSEREHRALSALLEALPEP 92 (520)
T ss_pred -ccchhhhccChHHHHHHHHHHHHHhCCCc
Confidence 112234556655444 5678888877666
No 141
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=91.15 E-value=1.2 Score=47.28 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=33.8
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.....|+|+++||||+.+.|+++|+.+|+||.+..-+
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~ 702 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVN 702 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEE
Confidence 4566899999999999999999999999999998775
No 142
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.14 E-value=2 Score=29.78 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=29.9
Q ss_pred EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
..++++|. ++||+.+++.+.|++.|+|+.-+++.
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 35788886 78999999999999999999998874
No 143
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=90.96 E-value=0.53 Score=45.08 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=33.8
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeE
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~ 185 (269)
++.||+|+|++-|.....-+... + -.+++++|+... ...+.++|+++|||++
T Consensus 2 ~~~rVgViG~~~G~~h~~al~~~--~-~~~eLvaV~d~~----~erA~~~A~~~gi~~y 53 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFYLAAFAAA--P-ERFELAGILAQG----SERSRALAHRLGVPLY 53 (343)
T ss_pred CCcEEEEEeHHHHHHHHHHHHhC--C-CCcEEEEEEcCC----HHHHHHHHHHhCCCcc
Confidence 56899999995453322222221 2 137888887754 3467899999999943
No 144
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.78 E-value=8 Score=42.42 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=84.6
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc----
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA---- 115 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l---- 115 (269)
...-++-.--|. |++.++=..+...|+...=....+... ...=...++|..++ ....+++.+.|..++..-.-
T Consensus 462 ~~v~l~ghl~d~-~lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~d-~~~L~~i~~~l~~la~~~~~~~~~ 539 (1042)
T PLN02819 462 ILVSLSGHLFDK-FLINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADD-KEVLDQIIDSLTRLANPNEDYISP 539 (1042)
T ss_pred EEEEeeeecccc-hhhhhhhhhhhccCCceeeeeeccccCcccccceeeecccCc-HHHHHHHHHHHHHhcccccccccc
Confidence 334444444466 899999999988887665555443211 11223456666553 33445555555555531110
Q ss_pred --------------ce-e-eeee-cCCCCCeeEEEEEeCC-chHHHHHHHhhhcCCC---------CceEEEEeeCCCCC
Q 024345 116 --------------MR-S-VVRV-PDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKL---------PVEITCVISNHDRG 168 (269)
Q Consensus 116 --------------~~-~-~~~~-~~~~~~~riav~~Sg~-g~~l~~ll~~~~~g~l---------~~~i~~Visn~~~~ 168 (269)
.. . .-+. ....+++||+|+|+|. |...-..|.. .+.. +..+..+|+++.
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~--~~~~~~~~~~~~~~~~~lV~VaD~~-- 615 (1042)
T PLN02819 540 AREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLAS--VKTISYYGDDSEEPTDVHVIVASLY-- 615 (1042)
T ss_pred chhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHh--CcCccccccccccccccEEEEECCC--
Confidence 00 0 0000 1123578999999998 4433333322 1210 111233455542
Q ss_pred CChhHHHHHHhC-CCCeEEeCCCCCchHHHHHHHhccCCEEEEEe
Q 024345 169 PNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (269)
Q Consensus 169 ~~~~v~~~a~~~-gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~ 212 (269)
...+.++++.+ ++....++.. +.+++.++++++|++|.+-
T Consensus 616 -~~~a~~la~~~~~~~~v~lDv~---D~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 616 -LKDAKETVEGIENAEAVQLDVS---DSESLLKYVSQVDVVISLL 656 (1042)
T ss_pred -HHHHHHHHHhcCCCceEEeecC---CHHHHHHhhcCCCEEEECC
Confidence 23456677766 7666666522 2346777777888877764
No 145
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=90.77 E-value=2 Score=40.13 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=46.9
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhh
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~e 112 (269)
.+-.|-+.-+|+||-.+++=..|+.+|||+..+.+.... .-|.|.+-++++. ..+-..++++|+++.+.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg---~~~~~~v~~AL~el~~~ 262 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEG---HIDDPLVKEALEELKEI 262 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEec---CcCcHhHHHHHHHHHhh
Confidence 344444445599999999999999999999999996321 2234443455542 23346788888887543
No 146
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=90.76 E-value=2.3 Score=30.59 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=40.7
Q ss_pred EEEEEEcC--CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 43 ~iItV~G~--DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
..++++|. .+||+.+++.+.|++.|+|+.-+++.. ..- .+.+-+++ ++..++++.+-+.|
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~----s~~--~is~~V~~-----~~~~~av~~Lh~~f 64 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM----RNV--DVQFVVDR-----DDYDNAIKALHAAL 64 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC----Cee--EEEEEEEH-----HHHHHHHHHHHHHH
Confidence 46888886 368999999999999999999988832 122 23333332 45556666655544
No 147
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=90.58 E-value=2.1 Score=38.72 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=48.8
Q ss_pred eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------hhHHHHHHhCCCCeEEeCCC--CCchHHH
Q 024345 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 197 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---------~~v~~~a~~~gIP~~~~~~~--~~~~e~~ 197 (269)
||++++.||.--+..+++.+.++ .+|+++++-.+...+ .-+...|+..|||.+.++.. .....++
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 57888888876455577776555 367777665543211 23567799999998875422 1223456
Q ss_pred HHHHhc--cCCEEEE
Q 024345 198 LLELVQ--NTDFLVL 210 (269)
Q Consensus 198 l~~~l~--~~Dlivl 210 (269)
+.+.++ ++|.+|.
T Consensus 77 l~~~l~~~gv~~vv~ 91 (223)
T TIGR00290 77 LKGILHTLDVEAVVF 91 (223)
T ss_pred HHHHHHHcCCCEEEE
Confidence 667776 6776664
No 148
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=90.07 E-value=2.6 Score=36.95 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=43.0
Q ss_pred eEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------hhHHHHHHhCCCCeEEeCCCC-C-chHHH
Q 024345 130 KVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAKE-N-EREEE 197 (269)
Q Consensus 130 riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---------~~v~~~a~~~gIP~~~~~~~~-~-~~e~~ 197 (269)
|++++.||.- +++ ++....+.| .++.++++..+..+. ..+...|+..|||.+.++... + .+.++
T Consensus 1 kv~v~~SGGkDS~~-al~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~ 76 (194)
T cd01994 1 KVVALISGGKDSCY-ALYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVED 76 (194)
T ss_pred CEEEEecCCHHHHH-HHHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHH
Confidence 6788999975 554 444444455 578777766432111 246788999999999886321 1 22345
Q ss_pred HHHHhc
Q 024345 198 LLELVQ 203 (269)
Q Consensus 198 l~~~l~ 203 (269)
+.+.++
T Consensus 77 l~~~l~ 82 (194)
T cd01994 77 LKELLR 82 (194)
T ss_pred HHHHHH
Confidence 555554
No 149
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=90.00 E-value=1.6 Score=42.47 Aligned_cols=69 Identities=4% Similarity=-0.050 Sum_probs=46.7
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
+..+-+.-+|+||-.+++=+.|+.+|+|+..+.+.... ..+.|..-++++. ..+-..++++|+++.+..
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg---~~~d~~~~~aL~~l~~~~ 366 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQA---NLRSAEMQKALKELGEIT 366 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeC---CCCCHHHHHHHHHHHHhc
Confidence 33344444799999999999999999999999997432 2244443344442 223356788888775544
No 150
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=89.65 E-value=1.2 Score=40.01 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=43.6
Q ss_pred eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------hhHHHHHHhCCCCeEEeCCC--CCchHHH
Q 024345 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 197 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---------~~v~~~a~~~gIP~~~~~~~--~~~~e~~ 197 (269)
||++++-||.--+..+|..+.++ ++|.+++|-.+...+ .-+..-|+..|||.+....+ ...+.++
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~ 76 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED 76 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence 68999999976333467666554 467776655432122 23677799999999987633 2234467
Q ss_pred HHHHhc--cCCEEEE
Q 024345 198 LLELVQ--NTDFLVL 210 (269)
Q Consensus 198 l~~~l~--~~Dlivl 210 (269)
+.+.++ ++|.+|.
T Consensus 77 l~~~l~~~~v~~vv~ 91 (218)
T PF01902_consen 77 LKEALKELKVEAVVF 91 (218)
T ss_dssp HHHHHCTC--SEEE-
T ss_pred HHHHHHHcCCCEEEE
Confidence 778887 6776654
No 151
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=89.60 E-value=3.2 Score=37.42 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=47.8
Q ss_pred eeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCC--------C-hhHHHHHHhCCCCeEEeCCCC-C-chHH
Q 024345 129 YKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE-N-EREE 196 (269)
Q Consensus 129 ~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~--------~-~~v~~~a~~~gIP~~~~~~~~-~-~~e~ 196 (269)
||++++-||.- +++ +++...++ ++|+++++..+... + .-+...|+..|||++.+.... . ...+
T Consensus 1 Mkv~vl~SGGKDS~l-Al~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~ 75 (222)
T TIGR00289 1 MKVAVLYSGGKDSIL-ALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVE 75 (222)
T ss_pred CeEEEEecCcHHHHH-HHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHH
Confidence 58999999976 554 66655543 36777777654311 1 236678999999987765221 1 1124
Q ss_pred HHHHHhc--cCCEEEE
Q 024345 197 ELLELVQ--NTDFLVL 210 (269)
Q Consensus 197 ~l~~~l~--~~Dlivl 210 (269)
++.+.++ ++|-+|.
T Consensus 76 ~l~~~l~~~gv~~vv~ 91 (222)
T TIGR00289 76 DLAGQLGELDVEALCI 91 (222)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 5556665 6777664
No 152
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=89.46 E-value=0.9 Score=30.00 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=29.6
Q ss_pred EEEEEcCC---CcChHHHHHHHHHhCCCeEeEeeee
Q 024345 44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 44 iItV~G~D---rpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.+++.|.+ .+|..+++.+.|+++++|+.-+.+.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 57788887 8999999999999999999998874
No 153
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.31 E-value=1.4 Score=33.26 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-HHHHHHHHHhhhhhhc
Q 024345 50 PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDFFKLSKMFN 114 (269)
Q Consensus 50 ~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~-~~~L~e~L~~la~el~ 114 (269)
++.||..++|-+.|+++|+|+.-+.|. . ..+.+.++.++.. .....++|+++..|+.
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~qs-----~---~sISftV~~sd~~~~~~~~~~l~~~~~~~~ 69 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVATS-----E---VSISLTLDPSKLWSRELIQQELDHVVEELE 69 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEec-----C---CEEEEEEEhhhhhhhhhHHHHHHHHHHHHH
Confidence 588999999999999999999999771 1 2233444432221 2222346666666665
No 154
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.02 E-value=2.6 Score=28.14 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 50 PDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 50 ~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
+|++|+.+++.+.|+++|+||.-+++.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 578999999999999999999998885
No 155
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=88.89 E-value=3.5 Score=28.04 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=27.6
Q ss_pred EEEEEc---CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 44 iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
.++++| .+.+|+.+++.+.|+++|+|+.-+++
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 477877 37799999999999999999988875
No 156
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=88.59 E-value=2.1 Score=41.71 Aligned_cols=73 Identities=7% Similarity=-0.023 Sum_probs=47.8
Q ss_pred CCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
.-.....+.++|.=+||||-..++.+.+.+.+.||.+.+..-....+.=...+.++.++ ..+.+++.++|++.
T Consensus 319 l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~-~~h~~~i~~~L~~~ 391 (409)
T TIGR02079 319 LLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND-KEDFAGLLERMAAA 391 (409)
T ss_pred HHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence 34456788999999999999999999777787899998875211112212334455543 22445566666553
No 157
>PRK08639 threonine dehydratase; Validated
Probab=88.57 E-value=2.1 Score=41.82 Aligned_cols=73 Identities=5% Similarity=0.008 Sum_probs=48.2
Q ss_pred CCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
.-.....+.+++.=+||||-..++.+.+.+.+.||.+++.......+.=...+.++.++ ..+.+++.++|++.
T Consensus 330 l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~-~~h~~~i~~~L~~~ 402 (420)
T PRK08639 330 LIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD-AEDYDGLIERMEAF 402 (420)
T ss_pred HHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence 34466788999999999999999999777777799999764211111112345555553 22455666666553
No 158
>PRK00907 hypothetical protein; Provisional
Probab=88.37 E-value=3.4 Score=32.35 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=48.6
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc-CCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~-~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
-.+-+.|+|.+++++...|..++..|.-...+-+.... +..|.|. +.+.+.+. +.++|.+-.++|.+
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~~ 84 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALRD 84 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 35899999999999999999999999876554443322 4568775 66777655 36667666666544
No 159
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.32 E-value=1.8 Score=32.19 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345 50 PDEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 50 ~DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
++.||..+++-+.|+++|+|+.-+.|
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 48899999999999999999999977
No 160
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.17 E-value=4.1 Score=27.67 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=27.9
Q ss_pred EEEEEc---CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 44 iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
.++++| .+.+|+.+++.+.|+++|+|+.-+++
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 477877 37799999999999999999988875
No 161
>PRK11898 prephenate dehydratase; Provisional
Probab=87.62 E-value=4.2 Score=37.79 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=43.5
Q ss_pred eEEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 42 HGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 42 ~~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
+..+-+.- +|+||-.+++=+.|+++|+|+..+.+.... ..+.|..-++++.. .+...++++|+.+.+
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHHHHHH
Confidence 44444444 457999999999999999999999996432 22334434444432 233456777766644
No 162
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=87.42 E-value=5.1 Score=36.36 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=48.6
Q ss_pred HHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc--hHHHHHHHhhhc-CCCCceEEEEeeCCCC-C-CChhHHHH
Q 024345 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDR-G-PNSHVIRF 176 (269)
Q Consensus 102 L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g--~~l~~ll~~~~~-g~l~~~i~~Visn~~~-~-~~~~v~~~ 176 (269)
+.+.+.+...++++ ..+.-||+|..||.. ..|..++...+. ...+.++.+|-.|+-- . ....+.++
T Consensus 12 ~~~~v~~~i~~~~l---------i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~ 82 (258)
T PRK10696 12 LRRQVGQAIADFNM---------IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEY 82 (258)
T ss_pred HHHHHHHHHHHcCC---------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHH
Confidence 44455555555653 124459999999985 455555544332 3334678877766521 1 12346899
Q ss_pred HHhCCCCeEEeC
Q 024345 177 LERHGIPYHYLC 188 (269)
Q Consensus 177 a~~~gIP~~~~~ 188 (269)
|+++|||++.+.
T Consensus 83 ~~~lgI~~~v~~ 94 (258)
T PRK10696 83 LESLGVPYHIEE 94 (258)
T ss_pred HHHhCCCEEEEE
Confidence 999999998764
No 163
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=87.36 E-value=1.7 Score=33.78 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=42.4
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--c
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~ 204 (269)
+||++.|.|.. .-+..+... .+ ..++++|+... .....++++++|+|++. + +.++++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~--~~--~~~v~~v~d~~----~~~~~~~~~~~~~~~~~------~----~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS--SP--DFEVVAVCDPD----PERAEAFAEKYGIPVYT------D----LEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT--TT--TEEEEEEECSS----HHHHHHHHHHTTSEEES------S----HHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhc--CC--CcEEEEEEeCC----HHHHHHHHHHhcccchh------H----HHHHHHhhc
Confidence 58999999874 233444442 12 36777766544 34577789999999332 1 224444 7
Q ss_pred CCEEEEEec
Q 024345 205 TDFLVLARY 213 (269)
Q Consensus 205 ~Dlivla~y 213 (269)
+|+++++.-
T Consensus 63 ~D~V~I~tp 71 (120)
T PF01408_consen 63 VDAVIIATP 71 (120)
T ss_dssp ESEEEEESS
T ss_pred CCEEEEecC
Confidence 999988754
No 164
>PRK08841 aspartate kinase; Validated
Probab=86.93 E-value=2.3 Score=41.35 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=48.1
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
.-..++++|...||+.+++.+.|++.|+||....+ +. -. +.+-++ .++..+++..+-++|.+
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~-----s~-~~--is~vv~-----~~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST-----EP-QS--SMLVLD-----PANVDRAANILHKTYVT 378 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC-----CC-cE--EEEEEe-----HHHHHHHHHHHHHHHcC
Confidence 45579999999999999999999999999977766 12 22 333333 36778888888888876
No 165
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=86.54 E-value=4.5 Score=40.42 Aligned_cols=78 Identities=13% Similarity=-0.039 Sum_probs=50.1
Q ss_pred cceecCCCCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCe-EEEEEEEEeCCCCCCHHHHHHH
Q 024345 28 PGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNV-FYSRSEFIFDPIKWPREQMDED 105 (269)
Q Consensus 28 ~~~~~~~~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~-F~m~~~v~~p~~~~~~~~L~e~ 105 (269)
++-|++.+.......++++ -+|+||-.+++=+.++++|||+..+.+.... ..+. |..-+.++.. ...+.++
T Consensus 19 ~~~~~~~~~~~~ktSLIFs--L~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~-----~~~l~~a 91 (464)
T TIGR01270 19 SIREGDEEEGVQRLSIIFS--LSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF-----HYGLQEA 91 (464)
T ss_pred ccCccccCCCCceEEEEEE--CCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC-----HHHHHHH
Confidence 3445555555544444444 5899999999999999999999999996432 2233 4333444422 2456666
Q ss_pred HHhhhhh
Q 024345 106 FFKLSKM 112 (269)
Q Consensus 106 L~~la~e 112 (269)
|+.|.+.
T Consensus 92 L~~Lk~~ 98 (464)
T TIGR01270 92 MDLLKSG 98 (464)
T ss_pred HHHHHHh
Confidence 6666543
No 166
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=86.34 E-value=1.4 Score=37.35 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=57.5
Q ss_pred CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCC--CCC-hhHH----HHHHhCCCCeEEeCCCCCchHHHHHH
Q 024345 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPN-SHVI----RFLERHGIPYHYLCAKENEREEELLE 200 (269)
Q Consensus 128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~--~~~-~~v~----~~a~~~gIP~~~~~~~~~~~e~~l~~ 200 (269)
.+||++.|-+.+.....++..+.. ++.++ .++.++. .+. ..+. +.++++|-.+.+.+ .+.+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~--~g~~~--~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e 69 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK--FGMEV--VLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEE 69 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH--TTSEE--EEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHH--cCCEE--EEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHH
Confidence 478999997556555555544322 34553 3333322 111 2344 55666787666643 2345
Q ss_pred HhccCCEEEEEecc----------------eeee---cccccccccccCCCccccCCCCCCCCCc
Q 024345 201 LVQNTDFLVLARYM----------------QVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGIN 246 (269)
Q Consensus 201 ~l~~~Dlivla~y~----------------~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~ 246 (269)
.++++|+|..-+|. ..++ ++..+...+= .|| ||.+||..
T Consensus 70 ~l~~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~-----mH~--LP~~R~~E 127 (158)
T PF00185_consen 70 ALKGADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIF-----MHP--LPANRGEE 127 (158)
T ss_dssp HHTT-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EE-----EES--SS--BTTS
T ss_pred hcCCCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEE-----EeC--CCCCCCce
Confidence 66799999999998 4455 5555555666 888 89999954
No 167
>PRK02047 hypothetical protein; Provisional
Probab=86.16 E-value=6.3 Score=30.59 Aligned_cols=72 Identities=8% Similarity=-0.037 Sum_probs=51.5
Q ss_pred CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeE--eeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILA--ADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~d--l~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
-..+..+.+.|+|++.++..+.|-.++..+...+.+ +++. .+.+|.|. +.+.+.+. +.+++.+-+++|.+.-
T Consensus 11 iefPc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k-~Ss~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~~ 85 (91)
T PRK02047 11 IEYPSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEER-PSSGGNYTGLTITVRAT----SREQLDNIYRALTGHP 85 (91)
T ss_pred ccCCCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEc-cCCCCeEEEEEEEEEEC----CHHHHHHHHHHHhhCC
Confidence 344556999999999999999999999999766544 3332 24568886 56666655 4677777777765543
No 168
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.98 E-value=5.3 Score=28.30 Aligned_cols=32 Identities=3% Similarity=-0.027 Sum_probs=26.7
Q ss_pred EEEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 44 iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
.++++|. +.||+.+++.+.|++.++++....+
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~ 36 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAA 36 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEEEeC
Confidence 6889997 7899999999999998888755443
No 169
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=85.94 E-value=5.7 Score=28.78 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.4
Q ss_pred EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
..|+++|. +++|+.+++.+.|+++++|+.-+++.
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 35778765 78999999999999999999999874
No 170
>PLN02317 arogenate dehydratase
Probab=85.15 E-value=6.3 Score=38.45 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=30.1
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~ 77 (269)
+..|.+.-+|+||-..++=+.|+.+|||+..+.+..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP 318 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP 318 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee
Confidence 344444448899999999999999999999999964
No 171
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=85.11 E-value=7.2 Score=38.10 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=63.8
Q ss_pred CeeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 128 ~~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
++||+++||.. |..-.+++.+. ++ .++|+++..++ .-....+.|++++-.+..+... +.-.++.+.+.+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~--p~-~f~VvaLaa~~---n~~~l~~q~~~f~p~~v~i~~~--~~~~~l~~~l~~~ 72 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRN--PD-RFRVVALSAGK---NVELLAEQAREFRPKYVVVADE--EAAKELKEALAAA 72 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhC--cc-ccEEEEEEcCC---CHHHHHHHHHHhCCCEEEEcCH--HHHHHHHHhhccC
Confidence 47999999654 33222334322 22 47899888766 3456889999999777665421 1112233323233
Q ss_pred CEEEEEecceeee-ccccc-ccccccCCCccccCCCCCCCCCcHHHHHHHcCCC
Q 024345 206 DFLVLARYMQVNR-IRLYV-AQLFSCLVTEQLTVLNSSLGGINISLSSFDATIE 257 (269)
Q Consensus 206 Dlivla~y~~il~-l~~~~-~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~ 257 (269)
+.-|+.|---+.. ++... .-++| -.+-+.|..|...|+.+|-+
T Consensus 73 ~~~v~~G~~~~~~l~~~~~vD~Vv~---------Ai~G~aGl~ptl~Ai~aGK~ 117 (385)
T PRK05447 73 GIEVLAGEEGLCELAALPEADVVVA---------AIVGAAGLLPTLAAIRAGKR 117 (385)
T ss_pred CceEEEChhHHHHHhcCCCCCEEEE---------eCcCcccHHHHHHHHHCCCc
Confidence 3335555444433 33221 22455 45667778888888888854
No 172
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=85.07 E-value=8.4 Score=37.97 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=46.3
Q ss_pred CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh---ccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcC
Q 024345 81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF---NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG 152 (269)
Q Consensus 81 ~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el---~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g 152 (269)
.|.|-+.++=--|. ...+|..+|+++-++| |+.+..-..+...-|.||||..|.+|.-+++++.-++..
T Consensus 82 ~G~~ql~v~~i~~~---G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r 153 (432)
T TIGR00237 82 RGDYQIICFEMQPA---GEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRR 153 (432)
T ss_pred CCcEEEEEEEeccC---ChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence 45555433322232 4778888888887655 444433445566678999999999999999998765543
No 173
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=84.99 E-value=7 Score=36.54 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=35.3
Q ss_pred CeeEEEEEeCC-chHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEE
Q 024345 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~ 186 (269)
|+|||++|+|. |..+ ..+++ .+ ..++++|+... +++...++|+++|+|..+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d---~es~~la~A~~~Gi~~~~ 53 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGID---PESDGLARARELGVKTSA 53 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCC---cccHHHHHHHHCCCCEEE
Confidence 47999999987 4433 45543 22 36888776644 455566799999999875
No 174
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=84.90 E-value=6.4 Score=27.21 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=26.4
Q ss_pred EEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 45 HVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 45 ItV~G~---DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
|+|.+. +++|..+++-+.|+++|+|+.-+.+
T Consensus 3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred EEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence 455554 7799999999999999999999976
No 175
>PRK00341 hypothetical protein; Provisional
Probab=84.16 E-value=6.4 Score=30.62 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=47.7
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~-~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~e 112 (269)
.+-+.|+|.++++..+.|-+++..+. ...+..... .+.+|.|. +.+.+.+. +.+++.+-+++|.+.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~----s~~q~~~iy~~L~~~ 84 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT----DEDQLQDINSALRAT 84 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhhC
Confidence 48899999999999999999998776 665443322 24578886 56666665 467777777776543
No 176
>PLN02551 aspartokinase
Probab=84.05 E-value=19 Score=36.48 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=53.1
Q ss_pred eEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (269)
Q Consensus 42 ~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~ 118 (269)
-..|++.|. +++|..++|-+.|+++|+||.-+.+. ...+.+.++-.+ -...+.+++.|+++..++....
T Consensus 366 v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS------e~sIs~~v~~~~-~~~~~~i~~~l~~l~~el~~~~- 437 (521)
T PLN02551 366 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS------EVSISLTLDPSK-LWSRELIQQELDHLVEELEKIA- 437 (521)
T ss_pred eEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc------CCEEEEEEehhH-hhhhhhHHHHHHHHHHHhhcCC-
Confidence 457788776 68999999999999999999999762 223334444221 1112335556666666665211
Q ss_pred eeeecCCCCCeeEEEEEeC
Q 024345 119 VVRVPDIDPKYKVAVLASK 137 (269)
Q Consensus 119 ~~~~~~~~~~~riav~~Sg 137 (269)
+....+..-+|.+.|..
T Consensus 438 --~V~v~~~vAiISvVG~~ 454 (521)
T PLN02551 438 --VVNLLQGRSIISLIGNV 454 (521)
T ss_pred --eEEEeCCEEEEEEEccC
Confidence 11223455678887764
No 177
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=83.91 E-value=6 Score=29.33 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=39.7
Q ss_pred CeeEEEEEeCCc---hHHHHHHHhhhcCCCCceEEEEeeCCC-CCCChhHHHHHHhCCCCeEEeCC
Q 024345 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCA 189 (269)
Q Consensus 128 ~~riav~~Sg~g---~~l~~ll~~~~~g~l~~~i~~Visn~~-~~~~~~v~~~a~~~gIP~~~~~~ 189 (269)
.+||+|-++-.. .-+.+-|+...+.. + .++ +|+.-. ++.+.-+.++|+++|+|+..+++
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~-~-~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH-P-DMV-LVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC-C-CEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 479999999886 33444455554442 2 344 455443 55566789999999999998874
No 178
>PRK06291 aspartate kinase; Provisional
Probab=83.71 E-value=15 Score=36.30 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=30.8
Q ss_pred eEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 42 ~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
-..|++.|. +++|+.+++.+.|+++|+|+.-++|.
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~ 358 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG 358 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 357888886 68999999999999999999999874
No 179
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=82.03 E-value=4.7 Score=29.77 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=23.3
Q ss_pred CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 51 DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 51 DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
-+||..++|-+.|+++|+|+.-+.|
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4599999999999999999999987
No 180
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=81.41 E-value=4.5 Score=33.39 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=43.6
Q ss_pred EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
..+++.|+ |-+||++.|++.|++.|+-|--++++.. + +. -|. ..+.+.-.++|++.+.++
T Consensus 64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStydt---D-hi---LVr----~~dLekAv~~L~eaGhev 126 (128)
T COG3603 64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYDT---D-HI---LVR----EEDLEKAVKALEEAGHEV 126 (128)
T ss_pred EEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEeccC---c-eE---EEe----hhhHHHHHHHHHHcCCcc
Confidence 47788888 9999999999999999999999998732 2 22 121 225666666777665543
No 181
>PRK06635 aspartate kinase; Reviewed
Probab=81.36 E-value=7.1 Score=37.58 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=30.6
Q ss_pred ceEEEEEEc---CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345 41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 41 ~~~iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
.-..++++| +|+||+.+++.+.|+++|+||.-+++
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s 376 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST 376 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe
Confidence 445688988 59999999999999999999988865
No 182
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=81.13 E-value=6.8 Score=36.01 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=41.3
Q ss_pred CCeeEEEEEeCCc--h-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345 127 PKYKVAVLASKQE--H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 127 ~~~riav~~Sg~g--~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
+++||+|+|.|.. . -+..+.+ .+.. +++++++... ...+.++|+++|+|..+ . .+.++++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~---~~~~-~~~vav~d~~----~~~a~~~a~~~~~~~~~-~--------~~~~ll~ 64 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAA---LGGG-LELVAVVDRD----PERAEAFAEEFGIAKAY-T--------DLEELLA 64 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHh---CCCc-eEEEEEecCC----HHHHHHHHHHcCCCccc-C--------CHHHHhc
Confidence 5689999999843 2 2222222 1211 4666665543 34688999999999222 1 1334555
Q ss_pred --cCCEEEEEe
Q 024345 204 --NTDFLVLAR 212 (269)
Q Consensus 204 --~~Dlivla~ 212 (269)
++|+++.+.
T Consensus 65 ~~~iD~V~Iat 75 (342)
T COG0673 65 DPDIDAVYIAT 75 (342)
T ss_pred CCCCCEEEEcC
Confidence 478887763
No 183
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=80.79 E-value=8.2 Score=38.31 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=43.8
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
..|.+.-+|+||-.+++=+.++++|+|+..+.+.... ..+.|..-++++.. .+ ..+.++++++.+..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~---~~-~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA---SD-RKLEGVIEHLRQKA 84 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC---cc-HHHHHHHHHHHHhc
Confidence 3444444999999999999999999999999996432 22344433444422 12 55666666665443
No 184
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=80.56 E-value=21 Score=34.92 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=43.8
Q ss_pred CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh---ccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhc
Q 024345 81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF---NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151 (269)
Q Consensus 81 ~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el---~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~ 151 (269)
.|.|.+.+.=--|. + ..+|...|+++-++| |+.+..-..+...-|.||||..|.+|.-+++++.-++.
T Consensus 88 ~g~~ql~v~~i~~~-g--~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~~~ 158 (438)
T PRK00286 88 RGDYQLIVEEIEPA-G--IGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVLRR 158 (438)
T ss_pred CCCEEEEEEEeeeC-C--ccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHh
Confidence 45565444322342 3 367777777776554 44433333455566899999999999999999876544
No 185
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=80.31 E-value=25 Score=31.98 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=57.3
Q ss_pred cceEEEEEEcCCCcC--hHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccce
Q 024345 40 LTHGIHVFHCPDEVG--IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (269)
Q Consensus 40 ~~~~iItV~G~DrpG--IVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~ 117 (269)
...|.+++.|.+..+ +...+-+.|.+.+..+.++++......+...+.+++.... .+..++.+...+++.+=+...
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~--~~~~~le~iv~~L~~~pgV~~ 217 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHA--DYRKTRELIISRIGDNDNITA 217 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecC--CchhhHHHHHHHHhCCCCeEE
Confidence 357888899988664 6899999999999999999985333345666777776553 245666666667766666555
Q ss_pred eeeee
Q 024345 118 SVVRV 122 (269)
Q Consensus 118 ~~~~~ 122 (269)
..|+.
T Consensus 218 v~W~~ 222 (225)
T PRK15385 218 IHWSI 222 (225)
T ss_pred EEEEe
Confidence 56653
No 186
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=79.68 E-value=8.4 Score=38.44 Aligned_cols=56 Identities=5% Similarity=0.029 Sum_probs=38.1
Q ss_pred CCeeEEEEEe-CC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 127 PKYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 127 ~~~riav~~S-g~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
.++||++||| |+ |..-.+++.+..+ .++++++-.++ .-.-+.+.|+++.-.+..+.
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd---~f~vvaLaag~---Ni~lL~~q~~~f~p~~v~v~ 113 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENPD---KFKVVALAAGS---NVTLLADQVRKFKPKLVAVR 113 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCcc---ccEEEEEECCC---CHHHHHHHHHHhCCCEEEEc
Confidence 4579999999 55 5666677765322 47888887765 22356777888886666653
No 187
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=79.23 E-value=7.7 Score=37.28 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=42.1
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.-..|+|+|. ++||+.+++.+.|++.|+||....+ ..-.+.+.++ .++..+++..|.++|.
T Consensus 336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~------s~~~is~vv~-------~~d~~~av~~Lh~~f~ 399 (401)
T TIGR00656 336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGS------SETNISFLVD-------EKDAEKAVRKLHEVFE 399 (401)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEc------CCCEEEEEEe-------HHHHHHHHHHHHHHHc
Confidence 3456789996 7999999999999999999986542 1112223332 3556667777766664
No 188
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.71 E-value=8.7 Score=33.86 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=36.1
Q ss_pred CeeEEEEEeCC-chHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
++||+|+|+|. |+.+ ..++. .+..+.+. .+++++. ......++++++|+... . +.+ +.++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~---~~~~~~~~-i~~~~~~--~~~~~~~~~~~~~~~~~--~----~~~----~~~~~~ 67 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLK---TSKEYIEE-IIVSNRS--NVEKLDQLQARYNVSTT--T----DWK----QHVTSV 67 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHh---CCCCCcCe-EEEECCC--CHHHHHHHHHHcCcEEe--C----ChH----HHHhcC
Confidence 47999999998 3433 33333 33222221 2345542 12346677777776432 1 111 223467
Q ss_pred CEEEEEec
Q 024345 206 DFLVLARY 213 (269)
Q Consensus 206 Dlivla~y 213 (269)
|+|+++-=
T Consensus 68 DiViiavp 75 (245)
T PRK07634 68 DTIVLAMP 75 (245)
T ss_pred CEEEEecC
Confidence 77777643
No 189
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=78.65 E-value=13 Score=35.98 Aligned_cols=57 Identities=21% Similarity=0.051 Sum_probs=38.8
Q ss_pred CCeeEEEEEeCCc-h-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 127 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 127 ~~~riav~~Sg~g-~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
++.||++..||.- | .+-.++.. .| .++.+|..+........+.++|+.+|||++.++
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~--~G---~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd 62 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQE--QG---YEIVGVTMRVWGDEPQDARELAARMGIEHYVAD 62 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHH--cC---CcEEEEEecCcchhHHHHHHHHHHhCCCEEEEe
Confidence 4469999999974 3 33344432 34 578777666422122468899999999999987
No 190
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=78.30 E-value=11 Score=28.20 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=40.2
Q ss_pred eEEEEEeCC-chHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCCE
Q 024345 130 KVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (269)
Q Consensus 130 riav~~Sg~-g~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dl 207 (269)
||+|+|+|+ |+.| +.++. .|.-+.+|.. ++++ ......++++++++.+...+ .. +.++++|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~---~g~~~~~v~~-~~~r---~~~~~~~~~~~~~~~~~~~~------~~---~~~~~adv 64 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA---SGIKPHEVII-VSSR---SPEKAAELAKEYGVQATADD------NE---EAAQEADV 64 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH---TTS-GGEEEE-EEES---SHHHHHHHHHHCTTEEESEE------HH---HHHHHTSE
T ss_pred CEEEECCCHHHHHHHHHHHH---CCCCceeEEe-eccC---cHHHHHHHHHhhccccccCC------hH---HhhccCCE
Confidence 789998776 3333 33333 3432356654 4344 24567888999986555321 12 33447899
Q ss_pred EEEEecceeee
Q 024345 208 LVLARYMQVNR 218 (269)
Q Consensus 208 ivla~y~~il~ 218 (269)
++++=--+.++
T Consensus 65 vilav~p~~~~ 75 (96)
T PF03807_consen 65 VILAVKPQQLP 75 (96)
T ss_dssp EEE-S-GGGHH
T ss_pred EEEEECHHHHH
Confidence 99875544444
No 191
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=78.13 E-value=16 Score=26.18 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=28.5
Q ss_pred EEEEEEcCCC-cChHHHHHHHHHhCCCeEeEeeee
Q 024345 43 GIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 43 ~iItV~G~Dr-pGIVa~VS~~La~~giNI~dl~~~ 76 (269)
..+||.+... ||..+++-+.|+++|+||.=+++.
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~ 36 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLINVS 36 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence 4577777744 899999999999999999999553
No 192
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=77.97 E-value=10 Score=31.43 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=44.3
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
++.|.-+|+||=...|.++|.++++|+.-+-.++... -.+.+.+... +.+...++|++.+=
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek---~KAlli~r~e----d~d~~~~aLed~gi 131 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK---QKALLIVRVE----DIDRAIKALEDAGI 131 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC---ceEEEEEEhh----HHHHHHHHHHHcCC
Confidence 5668889999999999999999999999887775422 1223334433 46777777777653
No 193
>PRK09181 aspartate kinase; Validated
Probab=77.79 E-value=46 Score=33.31 Aligned_cols=82 Identities=10% Similarity=-0.027 Sum_probs=53.2
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccce
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~ 117 (269)
.-..|+|.|. +.+|+.++|-+.|+++|+||.-+.+. .. .+.+.++. . .+.+++.++++.++++...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss------~~--sis~~v~~-~--~~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATN------AN--TITHYLWG-S--LKTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEec------Cc--EEEEEEcC-C--hHHHHHHHHHHHHhcCCce
Confidence 3456677665 78999999999999999999855442 12 23444443 2 3456677777777775321
Q ss_pred eeeeecCCCCCeeEEEEEeCC
Q 024345 118 SVVRVPDIDPKYKVAVLASKQ 138 (269)
Q Consensus 118 ~~~~~~~~~~~~riav~~Sg~ 138 (269)
. .. ...-+|++.|.|=
T Consensus 397 --i--~~-~~~a~VsvVG~gm 412 (475)
T PRK09181 397 --V--TV-RKVAIVSAIGSNI 412 (475)
T ss_pred --E--EE-CCceEEEEeCCCC
Confidence 1 12 4556788888763
No 194
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.74 E-value=18 Score=25.15 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=24.2
Q ss_pred EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
..++++|. ++||+.+++.+.|++ ++|.-+++
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~ 35 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALED--INVRMICY 35 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEE
Confidence 46889997 889999999999976 45544544
No 195
>PRK06635 aspartate kinase; Reviewed
Probab=77.17 E-value=39 Score=32.47 Aligned_cols=100 Identities=17% Similarity=0.020 Sum_probs=54.1
Q ss_pred EEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeee
Q 024345 44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (269)
Q Consensus 44 iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~ 122 (269)
.|++.| .++||+.+++.+.|+++|+||.-++|... ..|...+.+.++ . .+.+...+.|.++.++++... .
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~-~~~~~~is~~v~--~--~~~~~a~~~L~~~~~~~~~~~----i 334 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVS-EDGKTDITFTVP--R--DDLEKALELLEEVKDEIGAES----V 334 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-CCCceeEEEEEc--H--HHHHHHHHHHHHHHHHcCcce----E
Confidence 456555 47899999999999999999999988532 222334444443 2 123444555555333333211 1
Q ss_pred cCCCCCeeEEEEEeCCc---hHHHHHHHhhhcC
Q 024345 123 PDIDPKYKVAVLASKQE---HCLVDFLYGWQEG 152 (269)
Q Consensus 123 ~~~~~~~riav~~Sg~g---~~l~~ll~~~~~g 152 (269)
...+.--.|.+.+.+-. ..+..++..+.+.
T Consensus 335 ~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~ 367 (404)
T PRK06635 335 TYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEE 367 (404)
T ss_pred EEcCCeEEEEEECCCCCCCchHHHHHHHHHHHC
Confidence 12233445666554321 3344444444333
No 196
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.04 E-value=12 Score=33.97 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=36.5
Q ss_pred CCeeEEEEEeCCc-hHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEE
Q 024345 127 PKYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (269)
Q Consensus 127 ~~~riav~~Sg~g-~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~ 186 (269)
+|.||++.+||+- +.| -.+|. .|+ +.|....+.-. |.+..+.+|.+.|+|...
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr---~g~-~le~~~mvgid---p~sdglaraarlgv~tt~ 57 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILR---HGQ-HLEMAVMVGID---PQSDGLARAARLGVATTH 57 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHh---cCC-cccceeEEccC---CCccHHHHHHhcCCcchh
Confidence 6789999999994 443 33333 454 45555555433 577889999999998764
No 197
>PRK12483 threonine dehydratase; Reviewed
Probab=75.75 E-value=15 Score=37.22 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=45.6
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCH-HHHHHHHHhh
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPR-EQMDEDFFKL 109 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~-~~L~e~L~~l 109 (269)
.....+.+.|.=+||||-.+++++.|++. ||.+++-...+ ..... .+.++..+ ..+. +++.++|++.
T Consensus 341 ~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v--~v~ie~~~-~~~~~~~i~~~l~~~ 409 (521)
T PRK12483 341 GEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHL--FVGVQTHP-RHDPRAQLLASLRAQ 409 (521)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEE--EEEEEeCC-hhhhHHHHHHHHHHC
Confidence 35577889999999999999999999988 99998775321 12233 33344443 2233 5666666653
No 198
>PRK04998 hypothetical protein; Provisional
Probab=75.35 E-value=20 Score=27.53 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=49.1
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.+..+-+.|+|+..++.+++|..++.++.-.-..+++. .+.+|.|. ..+.+.+. +.+++.+-++++.+.-+
T Consensus 12 fPc~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r-~S~~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~~~ 83 (88)
T PRK04998 12 FPCSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVK-PSSKGNYHSVSITITAT----SIEQVETLYEELAKIEG 83 (88)
T ss_pred CCCCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEc-cCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhcCCC
Confidence 34568999999999999999999998875432223222 24578886 56666654 46777777777765544
No 199
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=75.34 E-value=4.3 Score=33.41 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=36.9
Q ss_pred CCCCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345 125 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 125 ~~~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
..+++||+|+|.|+ |.+|-..+.. .| ++|..|.+..+ . -.++|... ++-.... .+.+.++
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~--ag---~~v~~v~srs~----~-sa~~a~~~-~~~~~~~--------~~~~~~~ 67 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALAR--AG---HEVVGVYSRSP----A-SAERAAAF-IGAGAIL--------DLEEILR 67 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHH--TT---SEEEEESSCHH------HHHHHHC---TT-------------TTGGGC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHH--CC---CeEEEEEeCCc----c-cccccccc-ccccccc--------ccccccc
Confidence 45679999999999 7888777764 45 67887776441 2 23333332 2221111 1123344
Q ss_pred cCCEEEEEecceeee
Q 024345 204 NTDFLVLARYMQVNR 218 (269)
Q Consensus 204 ~~Dlivla~y~~il~ 218 (269)
++|+++++==-.-|.
T Consensus 68 ~aDlv~iavpDdaI~ 82 (127)
T PF10727_consen 68 DADLVFIAVPDDAIA 82 (127)
T ss_dssp C-SEEEE-S-CCHHH
T ss_pred cCCEEEEEechHHHH
Confidence 788888865444444
No 200
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=74.65 E-value=25 Score=33.62 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=51.4
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCC-CCC---------chHH
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KEN---------EREE 196 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~-~~~---------~~e~ 196 (269)
|||.|=..... |-++.+++.+++. .++|. ||.++ ...+.++++.+|+++..+.. ..+ .++.
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~--GheV~--it~R~---~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKR--GHEVL--ITARD---KDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhC--CCEEE--EEEec---cchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 56666666654 7888888776554 25654 55453 23578999999999999873 222 2334
Q ss_pred HHHHHhc--cCCEEEEEe
Q 024345 197 ELLELVQ--NTDFLVLAR 212 (269)
Q Consensus 197 ~l~~~l~--~~Dlivla~ 212 (269)
++.++++ +||+++..+
T Consensus 74 ~l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 74 KLLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHHhhCCCEEEecC
Confidence 5566666 899998654
No 201
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=74.62 E-value=21 Score=32.59 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=44.4
Q ss_pred chHHH--HHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCC--chHHHHHHHhc--cCCEEEEEe
Q 024345 139 EHCLV--DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLELVQ--NTDFLVLAR 212 (269)
Q Consensus 139 g~~l~--~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~--~~e~~l~~~l~--~~Dlivla~ 212 (269)
||.++ +|.+.+++. ..++..++.+. .....+..++.|.|++.++.... +..+++.++++ ++|++|+=+
T Consensus 15 GHv~Rcl~LA~~l~~~--g~~v~f~~~~~----~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 15 GHVMRCLTLARALHAQ--GAEVAFACKPL----PGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDH 88 (279)
T ss_pred cHHHHHHHHHHHHHHC--CCEEEEEeCCC----CHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcC
Confidence 45444 344555322 35777665554 33456888999999998873221 12245777777 799999999
Q ss_pred cc
Q 024345 213 YM 214 (269)
Q Consensus 213 y~ 214 (269)
|.
T Consensus 89 y~ 90 (279)
T TIGR03590 89 YG 90 (279)
T ss_pred CC
Confidence 83
No 202
>PLN02342 ornithine carbamoyltransferase
Probab=74.40 E-value=17 Score=34.99 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=54.0
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCC-CCChhHHHHHHhCCC-CeEEeCCCCCchHHHHHHHhcc
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR-GPNSHVIRFLERHGI-PYHYLCAKENEREEELLELVQN 204 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-~~~~~v~~~a~~~gI-P~~~~~~~~~~~e~~l~~~l~~ 204 (269)
...||+++|-+. .....++.... .++.++. ++.++. .++..+.+.|++.|. .+.+.+ ++.+.+++
T Consensus 193 ~glkva~vGD~~-nva~Sli~~~~--~~G~~v~--~~~P~~~~~~~~~~~~a~~~g~~~~~~~~--------d~~eav~~ 259 (348)
T PLN02342 193 EGTKVVYVGDGN-NIVHSWLLLAA--VLPFHFV--CACPKGYEPDAKTVEKARAAGISKIEITN--------DPAEAVKG 259 (348)
T ss_pred CCCEEEEECCCc-hhHHHHHHHHH--HcCCEEE--EECCcccccCHHHHHHHHHhCCCcEEEEc--------CHHHHhCC
Confidence 347888876543 23344443322 2234433 333332 134456677777664 333321 23456678
Q ss_pred CCEEEEEeccee-----------------ee---cccccccccccCCCccccCCCCCCCCCc
Q 024345 205 TDFLVLARYMQV-----------------NR---IRLYVAQLFSCLVTEQLTVLNSSLGGIN 246 (269)
Q Consensus 205 ~Dlivla~y~~i-----------------l~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~ 246 (269)
+|+|.+-.|... ++ ++..+..++= .|| ||.+||..
T Consensus 260 aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aiv-----MHp--LP~~rg~E 314 (348)
T PLN02342 260 ADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYF-----MHC--LPAERGVE 314 (348)
T ss_pred CCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEE-----eCC--CCcCCCce
Confidence 999998765322 11 3344444555 899 99999854
No 203
>PRK07431 aspartate kinase; Provisional
Probab=74.35 E-value=35 Score=34.71 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=58.8
Q ss_pred cCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeecCCCC
Q 024345 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDP 127 (269)
Q Consensus 49 G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~~~~~ 127 (269)
-++++|..+++.+.|+++|+||.-+++..... .|.-. +.+.+|. .+.+.+.+.++++.++++.-. ....+.
T Consensus 447 ~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~--isf~v~~--~~~~~~~~~l~~l~~~~~~~~----i~~~~~ 518 (587)
T PRK07431 447 VPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRD--ISFTVPK--EDREAAQKVLRELAKQLPGAE----VEDGPA 518 (587)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCcee--EEEEEcH--HHHHHHHHHHHHHHHhcCCce----EEEeCC
Confidence 35789999999999999999999998853222 13333 3344443 245566777777776665311 111235
Q ss_pred CeeEEEEEeCCc---hHHHHHHHhhhc
Q 024345 128 KYKVAVLASKQE---HCLVDFLYGWQE 151 (269)
Q Consensus 128 ~~riav~~Sg~g---~~l~~ll~~~~~ 151 (269)
--+|.+.|.|=. ..+..++....+
T Consensus 519 va~VSvVG~gm~~~~gv~~ri~~aL~~ 545 (587)
T PRK07431 519 IAKVSIVGAGMPGTPGVAARMFRALAD 545 (587)
T ss_pred eEEEEEECCCccCCcCHHHHHHHHHHH
Confidence 568888887542 334455544433
No 204
>PRK08210 aspartate kinase I; Reviewed
Probab=73.89 E-value=14 Score=35.75 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=42.2
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.-..|+|+|. |+||+.+++.+.|++.|+||....+ + .-. +.+-++ .++..++++.+.++|.
T Consensus 338 ~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~-----s-~~~--is~vv~-----~~~~~~a~~~Lh~~f~ 401 (403)
T PRK08210 338 NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD-----S-HTT--IWVLVK-----EEDMEKAVNALHDAFE 401 (403)
T ss_pred CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec-----C-CCE--EEEEEc-----HHHHHHHHHHHHHHhc
Confidence 4457889997 8999999999999999999975433 1 112 222232 3456677777777764
No 205
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=73.86 E-value=4.7 Score=39.60 Aligned_cols=92 Identities=17% Similarity=0.313 Sum_probs=60.3
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeec
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~ 123 (269)
.|.|.|.||-||-.++-..|..+++|+..+.. ++.+..| +..| +.+++.+++-..++-. ++
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~~IY-----ln~p--~l~~~~fs~L~aei~~----------I~ 62 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIY-----LNFP--ELEFESFSSLMAEIRR----------IP 62 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceee--cCCCeEE-----Eecc--ccCHHHHHHHHHHHhc----------CC
Confidence 47899999999999999999999999988877 3222222 3444 3455555443333211 12
Q ss_pred CCCCCeeEEEEEeCCc-hHHHHHHHhhhcCCC
Q 024345 124 DIDPKYKVAVLASKQE-HCLVDFLYGWQEGKL 154 (269)
Q Consensus 124 ~~~~~~riav~~Sg~g-~~l~~ll~~~~~g~l 154 (269)
--...++|.+|-|-+- .-|.+||++..++-+
T Consensus 63 GV~~vr~V~~mPseR~hl~L~aLL~al~~pVl 94 (511)
T COG3283 63 GVTDVRTVPWMPSEREHLALSALLEALPEPVL 94 (511)
T ss_pred CccceeeecCCcchhHhHHHHHHHHhCCCceE
Confidence 2224467777877775 577888887655543
No 206
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=73.82 E-value=31 Score=29.12 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=37.1
Q ss_pred eEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCC-----ChhHHHHHHhCCCCeEEeC
Q 024345 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 130 riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~-----~~~v~~~a~~~gIP~~~~~ 188 (269)
||++..||.. +.+..++...... .+.++.+|..++.-.+ ...+.++|+++|||++.++
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKK 65 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6889999975 4555555443221 2346777766642111 1357899999999999876
No 207
>PRK09181 aspartate kinase; Validated
Probab=73.69 E-value=13 Score=37.25 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=48.2
Q ss_pred ceEEEEEEcCC--CcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 41 THGIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 41 ~~~iItV~G~D--rpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
.-.+|+++|.. +||+.+++.+.|++.|+||.-++|.. ..-.+.+.| + .++..+++..+.++|..
T Consensus 401 ~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~----se~~Is~vV--~-----~~d~~~Av~~lH~~f~~ 466 (475)
T PRK09181 401 KVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSM----RQVNMQFVV--D-----EDDYEKAICALHEALVE 466 (475)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecC----CcceEEEEE--e-----HHHHHHHHHHHHHHHhc
Confidence 45689999975 89999999999999999999998842 122323333 2 36678888888888853
No 208
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=73.63 E-value=16 Score=33.30 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=28.7
Q ss_pred CeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeE
Q 024345 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~ 185 (269)
++||+|+|.|. |..+ ...+.+.....++++|+ +++ .....++++.+|++.+
T Consensus 1 mmrIgIIG~G~iG~~i---a~~l~~~~~~~elv~v~-d~~---~~~a~~~a~~~~~~~~ 52 (265)
T PRK13304 1 MLKIGIVGCGAIASLI---TKAILSGRINAELYAFY-DRN---LEKAENLASKTGAKAC 52 (265)
T ss_pred CCEEEEECccHHHHHH---HHHHHcCCCCeEEEEEE-CCC---HHHHHHHHHhcCCeeE
Confidence 47999999987 3322 22222322235666554 442 2345677777776644
No 209
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=72.94 E-value=15 Score=31.22 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=37.0
Q ss_pred eEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC-----hhHHHHHHhCCCCeEEeC
Q 024345 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 130 riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~-----~~v~~~a~~~gIP~~~~~ 188 (269)
||+|-.||.. ..|..++..++. ..+.++.++-.|+.-.+. ..+.++|+++|||+++..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence 7899999964 455555555443 234588888877632222 358999999999999876
No 210
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=72.55 E-value=20 Score=35.07 Aligned_cols=55 Identities=5% Similarity=0.089 Sum_probs=38.0
Q ss_pred CeeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 128 ~~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
|+||+||||.. |.+-.+++.+..+ .++|+++.+++ .-..+.+.+++++-.+..+.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~---~f~v~~Laa~~---n~~~L~~q~~~f~p~~v~i~ 57 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPD---HFQVVALSAGK---NVALMVEQILEFRPKFVAID 57 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCcc---ccEEEEEEcCC---CHHHHHHHHHHcCCCEEEEc
Confidence 36999999987 4555555654222 48899888876 23457888899987776664
No 211
>PRK07431 aspartate kinase; Provisional
Probab=72.13 E-value=13 Score=37.72 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=46.7
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
.-..++++|. .+||+.+++.+.|++.|+|+..+++. ...+.+-++ .++..++...|-++|++
T Consensus 518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S--------~~~Is~vV~-----~~~~~~av~~Lh~~f~~ 582 (587)
T PRK07431 518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATS--------EIRTSCVVA-----EDDGVKALQAVHQAFGL 582 (587)
T ss_pred CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeecc--------ceEEEEEEe-----HHHHHHHHHHHHHHhcc
Confidence 3457999997 88999999999999999999887651 123333333 36677888888888864
No 212
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=72.00 E-value=16 Score=33.48 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCe
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~ 184 (269)
.++||+++|.|. |..+- +.+..+.-..++++|.... .....++++++|++.
T Consensus 5 ~~irIGIIG~G~IG~~~a---~~L~~~~~~~el~aV~dr~----~~~a~~~a~~~g~~~ 56 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIA---QALDRGLPGLTLSAVAVRD----PQRHADFIWGLRRPP 56 (271)
T ss_pred CeeEEEEECccHHHHHHH---HHHHhcCCCeEEEEEECCC----HHHHHHHHHhcCCCc
Confidence 458999999997 43332 2222221136676554432 234677888888653
No 213
>PRK09224 threonine dehydratase; Reviewed
Probab=71.79 E-value=22 Score=35.72 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=46.6
Q ss_pred CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCC-HHHHHHHHHhhh
Q 024345 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWP-REQMDEDFFKLS 110 (269)
Q Consensus 39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~-~~~L~e~L~~la 110 (269)
......+.|.=|||||-..++.+.|+ +.||.+++..-.. ..+. ..+.+++++ ..+ .+++.++|++..
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~--V~vgie~~~-~~~~~~~i~~~L~~~g 393 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAH--IFVGVQLSR-GQEERAEIIAQLRAHG 393 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEE--EEEEEEeCC-hhhHHHHHHHHHHHcC
Confidence 44678999999999999999999998 6999999875321 1122 234444543 223 677888887644
No 214
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=71.37 E-value=36 Score=28.43 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=49.7
Q ss_pred eEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCC-----ChhHHHHHHhCCCCeEEe--CCCC--C-chH--
Q 024345 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYL--CAKE--N-ERE-- 195 (269)
Q Consensus 130 riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~-----~~~v~~~a~~~gIP~~~~--~~~~--~-~~e-- 195 (269)
||++..||.. +.+-.++...... .+.++.+|..++.-.. ...+.++|+++|||++.+ .... . ..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 6889999975 4444555443221 1346777766643111 135788999999999987 2111 1 111
Q ss_pred ------HHHHHHhc--cCCEEEEEeccee
Q 024345 196 ------EELLELVQ--NTDFLVLARYMQV 216 (269)
Q Consensus 196 ------~~l~~~l~--~~Dlivla~y~~i 216 (269)
..+.+..+ ++|.|++..+.--
T Consensus 80 ~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 80 AREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 22333333 7899988776543
No 215
>PLN02551 aspartokinase
Probab=71.01 E-value=15 Score=37.25 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=45.4
Q ss_pred ceEEEEEEcC--CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 41 THGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 41 ~~~iItV~G~--DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.-.+|+++|. .++|+.+++.+.|++.|+||.-++|.. ..-.+.+.|+ .++..+++..+-++|-
T Consensus 444 ~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga----SeinIS~vV~-------~~d~~~Av~aLH~~Ff 508 (521)
T PLN02551 444 GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA----SKVNISLIVN-------DDEAEQCVRALHSAFF 508 (521)
T ss_pred CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC----CCcEEEEEEe-------HHHHHHHHHHHHHHHh
Confidence 4567889987 689999999999999999999998732 2223333333 2456667777777763
No 216
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=70.93 E-value=8.4 Score=29.11 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=49.4
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~-~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.-+..+.+.++|.+..+.+.+|..++.++-.++.+..... .+.+|.|. ..+.+.+. +.+++.+-+++|.+.-+
T Consensus 6 efP~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~----s~eq~~~iy~~L~~~~~ 80 (85)
T PF04359_consen 6 EFPCDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVE----SAEQVDAIYRELKAHPG 80 (85)
T ss_dssp -SSCEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEES----SHHHHHHHHHHHTTSSS
T ss_pred cCCCcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEEC----CHHHHHHHHHHhccCCC
Confidence 4456799999999999999999999988765443333322 24567775 56666665 47888888877766544
No 217
>PLN02550 threonine dehydratase
Probab=70.90 E-value=15 Score=37.85 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=46.6
Q ss_pred CCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~-~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
.......+.+.|.=+||||-.+++++.|.+. ||.+++-.-. ...+... +.++..+ ..+.+++.++|++.+
T Consensus 411 ~~~~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~--v~ie~~~-~~~~~~i~~~l~~~g 481 (591)
T PLN02550 411 DVGRQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVL--YSVGVHT-EQELQALKKRMESAQ 481 (591)
T ss_pred HhccCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEE--EEEEeCC-HHHHHHHHHHHHHCC
Confidence 3344567889999999999999999999986 9999877532 1223333 3344433 234566666666543
No 218
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=70.83 E-value=21 Score=37.48 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=56.2
Q ss_pred EEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE--eCCCCCCHHHHHHHHHhh-hhhhcccee
Q 024345 43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI--FDPIKWPREQMDEDFFKL-SKMFNAMRS 118 (269)
Q Consensus 43 ~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~--~p~~~~~~~~L~e~L~~l-a~el~l~~~ 118 (269)
..+||+. +|++|.+.++..+|+-+|.+|...+... .|.....+.|. .+. ..+...|++++..- ..++.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~---~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-- 620 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA---NGPWSAEFDVRANGPQ-DFDPQEFLQAYKSGVYSELPDP-- 620 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec---CCceEEEEEEecCCCC-CCChHHHHHHHHHhhcCCCCcc--
Confidence 5889999 9999999999999999999999988754 45445455544 222 34678888888753 2444432
Q ss_pred eeeecCCCCCeeEEEEE
Q 024345 119 VVRVPDIDPKYKVAVLA 135 (269)
Q Consensus 119 ~~~~~~~~~~~riav~~ 135 (269)
...+.++.+++
T Consensus 621 ------~~~~~~~~~~~ 631 (693)
T PRK00227 621 ------APGITATFWHG 631 (693)
T ss_pred ------cCCCCceEeeC
Confidence 23455666554
No 219
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=70.38 E-value=24 Score=36.61 Aligned_cols=78 Identities=9% Similarity=0.152 Sum_probs=50.9
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCCh----hHHHHHHh--CCCCeEEeCCCCCchHHHH
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS----HVIRFLER--HGIPYHYLCAKENEREEEL 198 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~----~v~~~a~~--~gIP~~~~~~~~~~~e~~l 198 (269)
+..||+++|+|.. +++..|+. .|- .+|.+|+++... .+- ...+.|++ -+|++..++.+ .++.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~---sG~--~~I~~vd~D~v~-SNlnRIgEl~e~A~~~n~~v~v~~i~~~---~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLID---SGF--PRFHAIVTDAEE-HALDRIHELAEIAEETDDALLVQEIDFA---EDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHh---cCC--CcEEEEeccccc-hhhhHHHHHHHHHHHhCCCCceEeccCC---cchhH
Confidence 5579999999994 56666665 463 578888887641 111 24666776 36777776532 23466
Q ss_pred HHHhccCCEEEEEec
Q 024345 199 LELVQNTDFLVLARY 213 (269)
Q Consensus 199 ~~~l~~~Dlivla~y 213 (269)
.+.+++.|+|+++.=
T Consensus 199 ~ev~~~~DiVi~vsD 213 (637)
T TIGR03693 199 HEAFEPADWVLYVSD 213 (637)
T ss_pred HHhhcCCcEEEEECC
Confidence 777777888777653
No 220
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=70.31 E-value=13 Score=30.80 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=63.4
Q ss_pred EEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--cCC
Q 024345 131 VAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTD 206 (269)
Q Consensus 131 iav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~~D 206 (269)
|++|||.. |.+-.+++++. .-.++|+++..++ .-....+.|++++-++..+... ..-+++.+.+. +++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~---~d~f~v~~Lsa~~---n~~~L~~q~~~f~p~~v~i~~~--~~~~~l~~~~~~~~~~ 72 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH---PDKFEVVALSAGS---NIEKLAEQAREFKPKYVVIADE--EAYEELKKALPSKGPG 72 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC---TTTEEEEEEEESS---THHHHHHHHHHHT-SEEEESSH--HHHHHHHHHHHHTTSS
T ss_pred CEEEcCCcHHHHHHHHHHHhC---CCceEEEEEEcCC---CHHHHHHHHHHhCCCEEEEcCH--HHHHHHHHHhhhcCCC
Confidence 57888876 45555666643 2248999988876 3356788899999888877521 01123333332 456
Q ss_pred EEEEEecceeee-ccccc-ccccccCCCccccCCCCCCCCCcHHHHHHHcCCC
Q 024345 207 FLVLARYMQVNR-IRLYV-AQLFSCLVTEQLTVLNSSLGGINISLSSFDATIE 257 (269)
Q Consensus 207 livla~y~~il~-l~~~~-~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~ 257 (269)
.-++.|---+.. +...+ .-++| -..-+.|..|...|+.+|-+
T Consensus 73 ~~v~~G~~~l~~~~~~~~~D~vv~---------Ai~G~aGL~pt~~Ai~~gk~ 116 (129)
T PF02670_consen 73 IEVLSGPEGLEELAEEPEVDIVVN---------AIVGFAGLKPTLAAIKAGKD 116 (129)
T ss_dssp SEEEESHHHHHHHHTHTT-SEEEE-----------SSGGGHHHHHHHHHTTSE
T ss_pred CEEEeChHHHHHHhcCCCCCEEEE---------eCcccchHHHHHHHHHCCCe
Confidence 666666554444 22111 12344 33445677788888888843
No 221
>PRK09034 aspartate kinase; Reviewed
Probab=69.96 E-value=63 Score=31.98 Aligned_cols=99 Identities=10% Similarity=-0.011 Sum_probs=54.7
Q ss_pred eEEEEEEc---CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (269)
Q Consensus 42 ~~iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~ 118 (269)
-..|++.+ .+++|+.++|.+.|+++|+|+.-+++ +...+.+.++ ..+.+...+.+.++++..+++...
T Consensus 308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~s------s~~sis~~v~--~~~~~~a~~~~l~~el~~~~~~~~- 378 (454)
T PRK09034 308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPS------GIDDLSIIIR--ERQLTPKKEDEILAEIKQELNPDE- 378 (454)
T ss_pred EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEcC------CCcEEEEEEe--HHHhhHHHHHHHHHHHHHhhCCce-
Confidence 35667776 67899999999999999999998742 2233334443 211111112444555555554211
Q ss_pred eeeecCCCCCeeEEEEEeCCc---hHHHHHHHhhhcC
Q 024345 119 VVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEG 152 (269)
Q Consensus 119 ~~~~~~~~~~~riav~~Sg~g---~~l~~ll~~~~~g 152 (269)
....+..-+|.+.|++-. ..+..++..+.+.
T Consensus 379 ---I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~ 412 (454)
T PRK09034 379 ---LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEA 412 (454)
T ss_pred ---EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHC
Confidence 122334567777766542 2334444444333
No 222
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=69.80 E-value=17 Score=35.55 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=30.4
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
.-..++++|. ++||+.+++.+.|+++|+||.-+++
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~ 414 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISS 414 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEe
Confidence 3456888876 7899999999999999999988875
No 223
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=69.08 E-value=20 Score=33.11 Aligned_cols=79 Identities=10% Similarity=0.113 Sum_probs=45.0
Q ss_pred CeeEEEEEeCCc---hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC----Cc-------
Q 024345 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NE------- 193 (269)
Q Consensus 128 ~~riav~~Sg~g---~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~------- 193 (269)
+|||.+.+.|.| +...+|.+.+++. .+++..+..+. .+..+..+++|++++.++... +.
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 73 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR--GWEVLYLGTAR-----GMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAP 73 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEEECCC-----chhhhccccCCCcEEEEeccCcCCCChHHHHHHH
Confidence 479999887675 2223555554432 36776554432 122345556899999887311 10
Q ss_pred --h---HHHHHHHhc--cCCEEEEEec
Q 024345 194 --R---EEELLELVQ--NTDFLVLARY 213 (269)
Q Consensus 194 --~---e~~l~~~l~--~~Dlivla~y 213 (269)
. -..+.++++ +||++++.++
T Consensus 74 ~~~~~~~~~~~~~ik~~~pDvv~~~~~ 100 (357)
T PRK00726 74 FKLLKGVLQARKILKRFKPDVVVGFGG 100 (357)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 0 022344455 7999999874
No 224
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=68.92 E-value=26 Score=32.96 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=51.3
Q ss_pred CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCC-CChhHHHH-HHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRF-LERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~-~~~~v~~~-a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
..||++.|-. ...+..++..... +++++. ++.++.. ++..+.+. +++.|..+...+ .+.+.++++
T Consensus 152 gl~i~~vGd~-~~v~~Sl~~~l~~--~g~~v~--~~~P~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~~a 218 (304)
T PRK00779 152 GLKVAWVGDG-NNVANSLLLAAAL--LGFDLR--VATPKGYEPDPEIVEKIAKETGASIEVTH--------DPKEAVKGA 218 (304)
T ss_pred CcEEEEEeCC-CccHHHHHHHHHH--cCCEEE--EECCcccCCCHHHHHHHHHHcCCeEEEEc--------CHHHHhCCC
Confidence 4677777763 2333333333211 234433 3333321 22233333 667776665432 344666789
Q ss_pred CEEEEEeccee-----------------ee---cccccccccccCCCccccCCCCCCCCCc
Q 024345 206 DFLVLARYMQV-----------------NR---IRLYVAQLFSCLVTEQLTVLNSSLGGIN 246 (269)
Q Consensus 206 Dlivla~y~~i-----------------l~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~ 246 (269)
|+|.+-.|.+. ++ ++..+.+++= .|| ||.+||..
T Consensus 219 Dvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~iv-----mHp--lP~~R~~E 272 (304)
T PRK00779 219 DVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIF-----MHC--LPAHRGEE 272 (304)
T ss_pred CEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEE-----ecC--CCccCCCc
Confidence 99998755321 11 3344445555 786 88889854
No 225
>PRK08210 aspartate kinase I; Reviewed
Probab=68.88 E-value=46 Score=32.07 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=29.4
Q ss_pred eEEEEEEcCCC-cChHHHHHHHHHhCCCeEeEeeee
Q 024345 42 HGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 42 ~~iItV~G~Dr-pGIVa~VS~~La~~giNI~dl~~~ 76 (269)
-..++|.+.+. ||+.++|.+.|+++|+||.-+++.
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 34567777655 999999999999999999999774
No 226
>PRK06291 aspartate kinase; Provisional
Probab=68.68 E-value=20 Score=35.57 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=45.7
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
.-..|+++|. +++|+.+++.+.|++.|+||.-++|.. ..-. +.+-++ .++..+++..+-++|.+
T Consensus 397 ~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs----Se~~--Is~vV~-----~~d~~~av~~Lh~~f~~ 463 (465)
T PRK06291 397 DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS----SEVN--ISFVVD-----EEDGERAVKVLHDEFIL 463 (465)
T ss_pred CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc----ccCe--EEEEEe-----HHHHHHHHHHHHHHhcc
Confidence 4467999997 799999999999999999999888732 1222 222333 24466777777777753
No 227
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=68.41 E-value=56 Score=34.95 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=30.8
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.-..|+|.|. ++||+.+++.+.|+++|+|+.-++|.
T Consensus 314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs 352 (819)
T PRK09436 314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS 352 (819)
T ss_pred CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC
Confidence 3457888886 68999999999999999999888773
No 228
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=68.25 E-value=23 Score=35.68 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=46.4
Q ss_pred CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
.....+.+.|.=|||||-..++.+.|++ .||.+++-.-. ..+.=.+.+.+++++ ..+.+++.++|++..
T Consensus 321 ~~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~-~~~~a~v~vgie~~~-~~~~~~l~~~L~~~G 389 (499)
T TIGR01124 321 GEQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYA-DRKDAHIFVGVQLSN-PQERQEILARLNDGG 389 (499)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEec-CCCeEEEEEEEEeCC-HHHHHHHHHHHHHcC
Confidence 3457889999999999999999999997 59999987532 111111233444443 335666777776643
No 229
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=67.62 E-value=21 Score=33.09 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=41.5
Q ss_pred CeeEEEEEeCC-c-hHHHHHHHhhhcCCCC-ceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhcc
Q 024345 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (269)
Q Consensus 128 ~~riav~~Sg~-g-~~l~~ll~~~~~g~l~-~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~ 204 (269)
++||+|+|.|+ | .-+.-|++ .|.++ .+| ++||+ .......++.++|+.. . +. .+ +..++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~---~g~~~~~~I--~v~~~---~~e~~~~l~~~~g~~~-~-~~-----~~---~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLK---SGALPPEEI--IVTNR---SEEKRAALAAEYGVVT-T-TD-----NQ---EAVEE 62 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHh---cCCCCcceE--EEeCC---CHHHHHHHHHHcCCcc-c-Cc-----HH---HHHhh
Confidence 47999999987 2 33333343 35344 333 56766 2334457999999984 2 21 11 22336
Q ss_pred CCEEEEEecceeee
Q 024345 205 TDFLVLARYMQVNR 218 (269)
Q Consensus 205 ~Dlivla~y~~il~ 218 (269)
+|+|+|+===+.+.
T Consensus 63 advv~LavKPq~~~ 76 (266)
T COG0345 63 ADVVFLAVKPQDLE 76 (266)
T ss_pred CCEEEEEeChHhHH
Confidence 78888874444444
No 230
>PRK09034 aspartate kinase; Reviewed
Probab=67.48 E-value=21 Score=35.28 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=45.2
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.-..|+++|. ++||+.+++.+.|+++|+||.-++|.. +. ..+.+.++. ++..+++..+-++|.
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~---Se---~~Is~vV~~-----~d~~~av~~LH~~f~ 449 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS---SE---ISIMFGVKN-----EDAEKAVKAIYNAFF 449 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC---Cc---ceEEEEEcH-----HHHHHHHHHHHHHHh
Confidence 4567899886 789999999999999999999998732 11 234444443 445566666666663
No 231
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=66.08 E-value=26 Score=34.55 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=42.3
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC-----hhHHHHHHhCCCCeEEeC
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~-----~~v~~~a~~~gIP~~~~~ 188 (269)
+..||++..||.. .+|..++..++....+.++.++-.|+.-.+. ..+.++|+++|||++...
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 3468999999985 4565666544322224688889888742122 347888999999999865
No 232
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.39 E-value=28 Score=33.62 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCCCeeEEEEEeCCc-hHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345 125 IDPKYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (269)
Q Consensus 125 ~~~~~riav~~Sg~g-~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l 202 (269)
..+..|++|++-|.- ..+ .+|-- .++.+++|++|.+.. -..++++|++|++| . +.....+| +++
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~~---~p~s~~~Ivava~~s----~~~A~~fAq~~~~~--~-~k~y~syE----eLa 68 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIARDFVRALHT---LPESNHQIVAVADPS----LERAKEFAQRHNIP--N-PKAYGSYE----ELA 68 (351)
T ss_pred CCceeEEEEeehhHHHHHHHHHhcc---CcccCcEEEEEeccc----HHHHHHHHHhcCCC--C-CccccCHH----HHh
Confidence 346789999999874 222 22222 232358899887742 45689999999997 1 11123444 345
Q ss_pred c--cCCEEEEE
Q 024345 203 Q--NTDFLVLA 211 (269)
Q Consensus 203 ~--~~Dlivla 211 (269)
+ .+|.|+..
T Consensus 69 kd~~vDvVyi~ 79 (351)
T KOG2741|consen 69 KDPEVDVVYIS 79 (351)
T ss_pred cCCCcCEEEeC
Confidence 5 56887653
No 233
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=64.97 E-value=1.3e+02 Score=28.92 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=30.0
Q ss_pred eEEEEEEc---CCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 42 ~~iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~~ 76 (269)
-..++|.| .+++|+.+++.+.|+++|+||.-+++.
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 34688885 478999999999999999999988774
No 234
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=64.61 E-value=21 Score=29.68 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=51.7
Q ss_pred CeeEEEEEeCCc--h-HHHHHHHhhhcCCCCceE--EEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345 128 KYKVAVLASKQE--H-CLVDFLYGWQEGKLPVEI--TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (269)
Q Consensus 128 ~~riav~~Sg~g--~-~l~~ll~~~~~g~l~~~i--~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l 202 (269)
++||.|+.+|+. + -.+.|++..... ..++ +++-..+...++..+.+.++++||+.--..++.- +++ .+
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~~--~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~~k~i--~~~---~~ 74 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAPD--NVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHRSKQL--TEE---DF 74 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhccC--CeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCccCccC--chh---hh
Confidence 689999999995 3 446666654332 2333 2221111112566789999999999874222211 111 12
Q ss_pred ccCCEEEEEecceeee-cccccc
Q 024345 203 QNTDFLVLARYMQVNR-IRLYVA 224 (269)
Q Consensus 203 ~~~Dlivla~y~~il~-l~~~~~ 224 (269)
+++|+||...-...-. ++.++.
T Consensus 75 ~~~DlIitmd~~~~~~~~~~~p~ 97 (139)
T COG0394 75 DEFDLIITMDESNAADLCPLAPG 97 (139)
T ss_pred hhCCEEEEeChHHHhhHhhcCcc
Confidence 3789999987555433 444544
No 235
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=64.44 E-value=26 Score=26.48 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=29.6
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
+.+|....+. ++++|+ +..+.+-.|-+..-..++..+|+.++||+++++
T Consensus 12 l~~G~~~v~k----ai~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 12 IVIGTKQTVK----ALKRGS--VKEVVVAEDADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred EEEcHHHHHH----HHHcCC--eeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3444444444 444563 555555555431111358889999999999986
No 236
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=64.07 E-value=54 Score=31.36 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=53.3
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCC-CChhHHHHH----HhCCCCeEEeCCCCCchHHHHHHH
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFL----ERHGIPYHYLCAKENEREEELLEL 201 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~-~~~~v~~~a----~~~gIP~~~~~~~~~~~e~~l~~~ 201 (269)
...||+++|-+. .....++.... .++.++. ++.|+.. ++..+.+.+ +.+|..+...+ .+.+.
T Consensus 153 ~glkv~~vGD~~-~v~~Sl~~~~~--~~g~~v~--~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea 219 (338)
T PRK02255 153 EDCKVVFVGDAT-QVCVSLMFIAT--KMGMDFV--HFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD--------DVDEA 219 (338)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHH--hCCCEEE--EECCCccccCHHHHHHHHHHHHhcCCeEEEEc--------CHHHH
Confidence 347888887653 33333333321 2334443 3434321 233455444 34576655432 23456
Q ss_pred hccCCEEEEEecc-------------------eeee---cccccccccccCCCccccCCCCCCCCCc
Q 024345 202 VQNTDFLVLARYM-------------------QVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGIN 246 (269)
Q Consensus 202 l~~~Dlivla~y~-------------------~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~ 246 (269)
++++|+|..-.|. +.++ ++..+.+++= .|| ||.+||..
T Consensus 220 v~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~iv-----mHp--LP~~Rg~E 279 (338)
T PRK02255 220 VKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKF-----MHC--LPATRGEE 279 (338)
T ss_pred hCCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEE-----eCC--CCCcCCce
Confidence 6789999885543 1222 4444445666 788 89999843
No 237
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.89 E-value=1.1e+02 Score=27.30 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=77.0
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeec
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~ 123 (269)
++-|+=.+.+.-...+.+.|.+-|+...|++.. .|. --+.++++.++++..
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~---------------~~~-------a~~~i~~l~~~~~~~------- 65 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYT---------------NPF-------ASEVIKELVELYKDD------- 65 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC---------------Ccc-------HHHHHHHHHHHcCCC-------
Confidence 444555566678888999999888877776552 121 123455555554310
Q ss_pred CCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 124 ~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
+ + ..+|.|.-.+.+++-...+.|- + .++|-. -+..+.++|+++|||+.--.. ...|+.+.++
T Consensus 66 ---p--~-~~vGaGTV~~~~~~~~a~~aGA---~--FivsP~---~~~~v~~~~~~~~i~~iPG~~----T~~E~~~A~~ 127 (213)
T PRK06552 66 ---P--E-VLIGAGTVLDAVTARLAILAGA---Q--FIVSPS---FNRETAKICNLYQIPYLPGCM----TVTEIVTALE 127 (213)
T ss_pred ---C--C-eEEeeeeCCCHHHHHHHHHcCC---C--EEECCC---CCHHHHHHHHHcCCCEECCcC----CHHHHHHHHH
Confidence 1 1 3467777777777666666672 2 355544 456799999999999984221 2456777777
Q ss_pred -cCCEEEE
Q 024345 204 -NTDFLVL 210 (269)
Q Consensus 204 -~~Dlivl 210 (269)
++|++=+
T Consensus 128 ~Gad~vkl 135 (213)
T PRK06552 128 AGSEIVKL 135 (213)
T ss_pred cCCCEEEE
Confidence 9999887
No 238
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=63.86 E-value=31 Score=30.10 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=43.8
Q ss_pred eEEEEEeCCc----hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC--hhHHHHHHhCCCCeEEeCCCCCchH--HHHHHH
Q 024345 130 KVAVLASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENERE--EELLEL 201 (269)
Q Consensus 130 riav~~Sg~g----~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~--~~v~~~a~~~gIP~~~~~~~~~~~e--~~l~~~ 201 (269)
||.+|+-.+| +++-.|....+.. +.+|..+-++.-| .. .....+|+..|+|++.........+ .+.++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYR-IGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSS-THHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCC-ccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4555555554 6776766554433 4567777776543 11 2467789999999887542211111 112222
Q ss_pred hc--cCCEEEEEecce
Q 024345 202 VQ--NTDFLVLARYMQ 215 (269)
Q Consensus 202 l~--~~Dlivla~y~~ 215 (269)
.+ +.|+|+.=--++
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 32 478877654443
No 239
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=63.76 E-value=55 Score=29.24 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=43.1
Q ss_pred CCCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 126 DPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 126 ~~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
...-|+++|+-.+. .|-.. +.....+.-+.+|.+|=|.. .+..+..+|.++|||...+.
T Consensus 107 ~~~~rlalFvkd~C~~C~~~-~~~l~a~~~~~Diylvgs~~---dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDAR-VQRLLADNAPLDLYLVGSQG---DDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CCCCeEEEEeCCCChHHHHH-HHHHhcCCCceeEEEecCCC---CHHHHHHHHHHcCCCHHHee
Confidence 35569999998664 56543 34444555578888777655 46789999999999988776
No 240
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.51 E-value=29 Score=26.61 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=32.3
Q ss_pred EEeeCCCCCCChhHHHHHHhCCCCeEEe--CCCCCchHHHHHHHhccCCEEEEE
Q 024345 160 CVISNHDRGPNSHVIRFLERHGIPYHYL--CAKENEREEELLELVQNTDFLVLA 211 (269)
Q Consensus 160 ~Visn~~~~~~~~v~~~a~~~gIP~~~~--~~~~~~~e~~l~~~l~~~Dlivla 211 (269)
++|..+++ ......+.++++|.....+ +......+..+-+.++++|+||+.
T Consensus 3 liVGG~~~-~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 3 LIVGGRED-RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred EEEcCCcc-cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 45555433 3456788899999988877 211122233466777799998873
No 241
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=63.04 E-value=53 Score=26.43 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=52.1
Q ss_pred hhhheeccccccccccceecCCCCCCCcceEEEEEEcCCCc-ChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345 13 QVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEV-GIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iItV~G~Drp-GIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~ 91 (269)
.+|+..... ..+.++-.... +. +.+|.|+-.+.. ....+|...|.++||.++-.+. + .+.++
T Consensus 30 DvV~~~~~~-g~~~~~~~v~~----sG--nsTiRv~~~~~~~~~~~~v~~~l~~lG~~~E~~~~------~----~lav~ 92 (117)
T PF14085_consen 30 DVVRAEPDD-GELWFQKVVES----SG--NSTIRVIFDDPGPDDIEAVREELEALGCTVEGFSE------R----MLAVD 92 (117)
T ss_pred CEEEEEeCC-CeEEEEEEEec----CC--CEEEEEEEcCCcchhHHHHHHHHHHcCCeEEccCC------C----EEEEE
Confidence 444444444 44444444332 22 233444444333 4799999999999998877644 2 35678
Q ss_pred eCCCCCCHHHHHHHHHhhhhh
Q 024345 92 FDPIKWPREQMDEDFFKLSKM 112 (269)
Q Consensus 92 ~p~~~~~~~~L~e~L~~la~e 112 (269)
+|+ ..+.+.+++-|+...++
T Consensus 93 VP~-~~~~~~i~~~L~~~~e~ 112 (117)
T PF14085_consen 93 VPP-SVDFDAIKDYLDRGEEQ 112 (117)
T ss_pred ECC-CCCHHHHHHHHHhhhhc
Confidence 886 88999999999985443
No 242
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=62.27 E-value=15 Score=28.21 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCC
Q 024345 144 DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (269)
Q Consensus 144 ~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (269)
+-++++++|. ...+.+-.|-++.--.++..+|+++|||+.+++.
T Consensus 20 qt~Kai~kg~--~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 20 ETLKALKKDQ--VTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHhcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 4456666674 4455444444311115799999999999999974
No 243
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.34 E-value=34 Score=36.73 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=33.9
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~ 78 (269)
.-.-|+|.++|+|.+-+.++..+..+|.||.+.+-+..
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt 720 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTT 720 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEc
Confidence 45678999999999999999999999999999877644
No 244
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=61.16 E-value=38 Score=31.45 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=23.6
Q ss_pred cCCCCCeeEEEEEeCCchHHHHHHHhhhc
Q 024345 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQE 151 (269)
Q Consensus 123 ~~~~~~~riav~~Sg~g~~l~~ll~~~~~ 151 (269)
+....+.||||..|.+|.-+++++.-++.
T Consensus 9 ~lP~~p~~I~vITs~~gAa~~D~~~~~~~ 37 (319)
T PF02601_consen 9 PLPKFPKRIAVITSPTGAAIQDFLRTLKR 37 (319)
T ss_pred CCCCCCCEEEEEeCCchHHHHHHHHHHHH
Confidence 44567789999999999999998876554
No 245
>PRK06683 hypothetical protein; Provisional
Probab=61.09 E-value=15 Score=27.94 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=30.9
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
+++|....+.++ ++|+ +..+.|-.|-++.-.-++..+|+.++||+++++
T Consensus 12 ~v~G~~~v~kai----k~gk--aklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 12 VVVGHKRTLEAI----KNGI--VKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred EEEcHHHHHHHH----HcCC--eeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 455555555554 3563 566666665532112357888999999999886
No 246
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=61.05 E-value=36 Score=30.92 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=44.5
Q ss_pred eeEEEEEeCCchHHH---HHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC----Cc-------h
Q 024345 129 YKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NE-------R 194 (269)
Q Consensus 129 ~riav~~Sg~g~~l~---~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~-------~ 194 (269)
|||.|.+.|.+..+. .|.+.+++. .+++..+ +.+ . ....++.+++|++++.++... .. .
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~~-~---~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~ 73 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GTK-R---GLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPL 73 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eCC-C---cchhcccccCCCceEEEeccCcCCCChHHHHHHHH
Confidence 488888888874443 566665542 2677655 532 1 112244456899999887321 10 0
Q ss_pred -----HHHHHHHhc--cCCEEEEEec
Q 024345 195 -----EEELLELVQ--NTDFLVLARY 213 (269)
Q Consensus 195 -----e~~l~~~l~--~~Dlivla~y 213 (269)
-..+.+.++ ++|++++.+.
T Consensus 74 ~~~~~~~~l~~~i~~~~pDvVi~~~~ 99 (348)
T TIGR01133 74 KLLKAVFQARRILKKFKPDAVIGFGG 99 (348)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 012334455 7999998643
No 247
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=60.88 E-value=23 Score=34.22 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=46.2
Q ss_pred eeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC------------hhHHHHHHhCCCCeEEeCCCC----
Q 024345 129 YKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN------------SHVIRFLERHGIPYHYLCAKE---- 191 (269)
Q Consensus 129 ~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~------------~~v~~~a~~~gIP~~~~~~~~---- 191 (269)
|||+|..||.- |..-+.|-. ++| ++|.+|....-+..+ ..+.+.|+..|||++.++-.+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk-~~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~ 76 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK-EQG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWE 76 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH-HCT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHH
T ss_pred CeEEEEccCCHHHHHHHHHHH-hhc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 69999999974 555444322 356 788888554322111 137889999999999998321
Q ss_pred ----------------C---------chHHHHHHHhc---cCCEEEEEecceeee
Q 024345 192 ----------------N---------EREEELLELVQ---NTDFLVLARYMQVNR 218 (269)
Q Consensus 192 ----------------~---------~~e~~l~~~l~---~~Dlivla~y~~il~ 218 (269)
| +. ..+++... ++|+|..-.|-|+..
T Consensus 77 ~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF-~~l~~~a~~~~g~d~iATGHYAri~~ 130 (356)
T PF03054_consen 77 EVIEPFLDEYRKGRTPNPCVLCNRFIKF-GALLEYADEGLGADYIATGHYARIEK 130 (356)
T ss_dssp HTHHHHHHHHHTT----HHHHHHHHTTT-THHHHHHHTTTT-SEEE---SEEEEE
T ss_pred HHHHHHHHHHhcCCCCChHHhhchhhhH-HHHHHHHHhhcCCCeeccceeEEEEe
Confidence 0 00 23444443 699999999999876
No 248
>PRK10126 tyrosine phosphatase; Provisional
Probab=60.68 E-value=56 Score=26.99 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=45.2
Q ss_pred CeeEEEEEeCCc--h-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhcc
Q 024345 128 KYKVAVLASKQE--H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (269)
Q Consensus 128 ~~riav~~Sg~g--~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~ 204 (269)
++||.|...|+- + -.++++.... +.+.+.=+++.....+.++..+.+.++++||+..-...+. -++ +.+++
T Consensus 2 ~~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h~sr~--lt~---~~~~~ 75 (147)
T PRK10126 2 FNNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQ--ISR---RLCRN 75 (147)
T ss_pred CCeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCCcccc--CCH---HHhcc
Confidence 368888888884 3 3455665432 2222222333221212256789999999999964322111 111 13347
Q ss_pred CCEEEEEecc
Q 024345 205 TDFLVLARYM 214 (269)
Q Consensus 205 ~Dlivla~y~ 214 (269)
+|+|+...-.
T Consensus 76 ~DlIl~Md~~ 85 (147)
T PRK10126 76 YDLILTMEKR 85 (147)
T ss_pred CCEEEECCHH
Confidence 9999998544
No 249
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=60.27 E-value=1.1e+02 Score=26.39 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=68.6
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~-~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~ 118 (269)
++.+.+.|.=+|+||=.-.|=+=|++.|+||..+.-.-. ..++.-..++.+.... .+..++-.+.+ ++.|.-
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~----~~~~~~i~~~~-e~~Gi~-- 75 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR----EDKDAKIIRLL-EEEGII-- 75 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc----cHHHHHHHHHH-HhCCcE--
Confidence 578889999999999999999999999999998654321 2255666667776552 23444444444 566643
Q ss_pred eeeecCCCCCeeEEEEEeCC--chHHHHHHHhhhc
Q 024345 119 VVRVPDIDPKYKVAVLASKQ--EHCLVDFLYGWQE 151 (269)
Q Consensus 119 ~~~~~~~~~~~riav~~Sg~--g~~l~~ll~~~~~ 151 (269)
..+++..+.+-+.-+.-=|. -+++++=++++..
T Consensus 76 I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ 110 (170)
T COG2061 76 IIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINS 110 (170)
T ss_pred EEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhc
Confidence 33444444444444443344 3788888887654
No 250
>PRK01581 speE spermidine synthase; Validated
Probab=58.75 E-value=1.9e+02 Score=28.36 Aligned_cols=134 Identities=10% Similarity=-0.021 Sum_probs=80.8
Q ss_pred ccccceecCCCCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCC-eEeEeeeec----c-CCCCeEEEEEEEEeCCCCCC
Q 024345 25 LKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGG-NILAADVFV----P-EKKNVFYSRSEFIFDPIKWP 98 (269)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~gi-NI~dl~~~~----~-~~~g~F~m~~~v~~p~~~~~ 98 (269)
-+||-.|+.+-+.......+|.=.|.|...+...+|...--.|+ +|+--.++. . -.++.|.+.+.-.+--...|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~S~yQ~I~I~et~~~~L~LDG~~Q~se~D 132 (374)
T PRK01581 53 RGIQYAETKQDNQVQSENVVIVPTDSHNLDIWDEISLKEIQAGEHTNLFAEKSNYQNINLLQVSDIRLYLDKQLQFSSVD 132 (374)
T ss_pred cCceeccCCccchhhccceEEeecCCCchhhhhHHHHHHHhhcccCEEEecCCCCceEEEEEcCCEEEEECCeecccccc
Confidence 45899998777777888888989999999999999998887776 665544431 0 12334532221111111112
Q ss_pred HHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHH
Q 024345 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178 (269)
Q Consensus 99 ~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~ 178 (269)
..--.|.|-..+-. ....+.||.++|.|.|..++.+++. +. ..+|.+| .- +..++++|+
T Consensus 133 E~iYHE~Lvhp~m~-----------~h~~PkrVLIIGgGdG~tlrelLk~---~~-v~~It~V--EI----DpeVIelAr 191 (374)
T PRK01581 133 EQIYHEALVHPIMS-----------KVIDPKRVLILGGGDGLALREVLKY---ET-VLHVDLV--DL----DGSMINMAR 191 (374)
T ss_pred HHHHHHHHHHHHHH-----------hCCCCCEEEEECCCHHHHHHHHHhc---CC-CCeEEEE--eC----CHHHHHHHH
Confidence 22223333332211 1234569999999999988888863 21 1345444 22 235889998
Q ss_pred h
Q 024345 179 R 179 (269)
Q Consensus 179 ~ 179 (269)
+
T Consensus 192 ~ 192 (374)
T PRK01581 192 N 192 (374)
T ss_pred h
Confidence 7
No 251
>PRK13530 arsenate reductase; Provisional
Probab=58.58 E-value=44 Score=27.31 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=42.6
Q ss_pred CeeEEEEEeCCc--h-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhcc
Q 024345 128 KYKVAVLASKQE--H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (269)
Q Consensus 128 ~~riav~~Sg~g--~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~ 204 (269)
++||.|+.+|+- + -.++++.....+. .++..-=+.. ...+..+.+.++++||++.-...+. -++ +.+++
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~--~~v~SAG~~~-~~~~~~a~~~l~e~Gi~~~~~~s~~--l~~---~~~~~ 74 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDK--WNVYSAGIEA-HGVNPNAIKAMKEVGIDISNQTSDI--IDN---DILNN 74 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCC--EEEECCCCCC-CCCCHHHHHHHHHcCCCcCCCcccc--CCh---hHhcc
Confidence 578999988885 3 3455555432222 2221111111 1256678999999999874222111 111 12337
Q ss_pred CCEEEEEe
Q 024345 205 TDFLVLAR 212 (269)
Q Consensus 205 ~Dlivla~ 212 (269)
.|+||...
T Consensus 75 ~D~ii~m~ 82 (133)
T PRK13530 75 ADLVVTLC 82 (133)
T ss_pred CCEEEEec
Confidence 89999874
No 252
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=56.92 E-value=31 Score=27.67 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=41.8
Q ss_pred eeEEEEEeCCc---hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 129 ~riav~~Sg~g---~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
+||.|+..|+- .-.+++++....+.+.+.-+++-.++ .+..+.+.++++||+..-...+.- ++ ..++++
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~---~~p~a~~~l~e~Gid~~~~~s~~l--~~---~~~~~~ 72 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSR---VHPTAIEVMSEIGIDISGQTSKPL--EN---FHPEDY 72 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCC---CCHHHHHHHHHhCCCcccCccccC--Ch---hHhcCC
Confidence 47788777774 23466666543332211112222222 566789999999999753222211 11 123479
Q ss_pred CEEEEEe
Q 024345 206 DFLVLAR 212 (269)
Q Consensus 206 Dlivla~ 212 (269)
|+||...
T Consensus 73 D~iitm~ 79 (126)
T TIGR02689 73 DVVISLC 79 (126)
T ss_pred CEEEEeC
Confidence 9999873
No 253
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=55.97 E-value=44 Score=31.67 Aligned_cols=80 Identities=13% Similarity=0.173 Sum_probs=47.2
Q ss_pred CeeEEEEEeCCc-hHHH--HHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCc---h------
Q 024345 128 KYKVAVLASKQE-HCLV--DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---R------ 194 (269)
Q Consensus 128 ~~riav~~Sg~g-~~l~--~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~---~------ 194 (269)
|+||.+-+.|+| |..- ++.+..++. .++|..+-+++.- -.++..++|+|++.++.. ... .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~~-----e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 73 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKED--NWDISYIGSHQGI-----EKTIIEKENIPYYSISSGKLRRYFDLKNIKDP 73 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCcc-----ccccCcccCCcEEEEeccCcCCCchHHHHHHH
Confidence 457888888886 5443 445555542 4788877665521 234456789999887622 111 0
Q ss_pred ------HHHHHHHhc--cCCEEEEEe-cc
Q 024345 195 ------EEELLELVQ--NTDFLVLAR-YM 214 (269)
Q Consensus 195 ------e~~l~~~l~--~~Dlivla~-y~ 214 (269)
.-...++++ +||+++..| |.
T Consensus 74 ~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~ 102 (352)
T PRK12446 74 FLVMKGVMDAYVRIRKLKPDVIFSKGGFV 102 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEecCchh
Confidence 112234444 899999877 54
No 254
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=55.92 E-value=87 Score=27.76 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=39.9
Q ss_pred EEEeCCc-hHHHHHHHhhhcCCCCceEEEEee-CCCC--------CCChhHHHHHHhCCCCeEEeCCCC--CchHHHHHH
Q 024345 133 VLASKQE-HCLVDFLYGWQEGKLPVEITCVIS-NHDR--------GPNSHVIRFLERHGIPYHYLCAKE--NEREEELLE 200 (269)
Q Consensus 133 v~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Vis-n~~~--------~~~~~v~~~a~~~gIP~~~~~~~~--~~~e~~l~~ 200 (269)
++.||.- +++ ++..+.+.| .++.++++ +.++ .+-..+...|+..|||.+.++... ...++.+.+
T Consensus 2 vl~SGGkDS~~-al~~a~~~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~ 77 (218)
T TIGR03679 2 ALYSGGKDSNY-ALYKALEEG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKG 77 (218)
T ss_pred eeecCcHHHHH-HHHHHHHcC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHH
Confidence 4667754 665 444444555 57754433 2211 011346788999999998887331 112233444
Q ss_pred Hhc-----cCCEEEE
Q 024345 201 LVQ-----NTDFLVL 210 (269)
Q Consensus 201 ~l~-----~~Dlivl 210 (269)
.++ ++|.|+.
T Consensus 78 ~l~~~~~~g~~~vv~ 92 (218)
T TIGR03679 78 ALKELKREGVEGIVT 92 (218)
T ss_pred HHHHHHHcCCCEEEE
Confidence 443 5665554
No 255
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.73 E-value=75 Score=24.94 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=35.6
Q ss_pred CCeeEEEEEeCCch--HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC
Q 024345 127 PKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190 (269)
Q Consensus 127 ~~~riav~~Sg~g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~ 190 (269)
.+.-++|++|.+|. ...+.++..++. .+.+.+ ||+. .+..++|.++|+++..++..
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI~-IT~~-----~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKER--GAKIVA-ITSG-----GKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEE-EeCC-----chHHHHHHHcCCcEEECCCC
Confidence 34468999999983 333344443333 255554 4433 14888999999999998743
No 256
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=55.63 E-value=57 Score=26.07 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=26.3
Q ss_pred EEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC------hhHHHHHHhCCCCeEEeCCC
Q 024345 133 VLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN------SHVIRFLERHGIPYHYLCAK 190 (269)
Q Consensus 133 v~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~------~~v~~~a~~~gIP~~~~~~~ 190 (269)
+.+|++. .-+..|-+ .| +..||+++|+... ....+.|+++|+.|+++|-.
T Consensus 9 ~~vs~Q~~~~d~~~la~---~G-----fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~ 66 (110)
T PF04273_consen 9 LSVSGQPSPEDLAQLAA---QG-----FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVD 66 (110)
T ss_dssp EEEECS--HHHHHHHHH---CT-------EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----
T ss_pred eEECCCCCHHHHHHHHH---CC-----CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecC
Confidence 3556654 44554443 45 5568999976321 12668999999999999933
No 257
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=55.61 E-value=58 Score=31.59 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=56.8
Q ss_pred CCeeEEEEEeCCc-hHHHHH-HHhhhcCCCCceEEEEeeCC-C-CCC-C-------hhHHHHHHhCCCCeEEeC-CCCC-
Q 024345 127 PKYKVAVLASKQE-HCLVDF-LYGWQEGKLPVEITCVISNH-D-RGP-N-------SHVIRFLERHGIPYHYLC-AKEN- 192 (269)
Q Consensus 127 ~~~riav~~Sg~g-~~l~~l-l~~~~~g~l~~~i~~Visn~-~-~~~-~-------~~v~~~a~~~gIP~~~~~-~~~~- 192 (269)
.++||++.-||.- |.+.+. |.. +| ++|.++..+. + +.. . ..+.+.|...|||++.++ .+.-
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~--QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~ 76 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKE--QG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFW 76 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHH--cC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHH
Confidence 4689999999974 555443 432 45 7888885543 2 111 1 148999999999999998 3310
Q ss_pred -----------------------chH---HHHHHHhc--cCCEEEEEecceeee
Q 024345 193 -----------------------ERE---EELLELVQ--NTDFLVLARYMQVNR 218 (269)
Q Consensus 193 -----------------------~~e---~~l~~~l~--~~Dlivla~y~~il~ 218 (269)
..+ ..+++.+. ++|+|..-.|-|+-+
T Consensus 77 ~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~ 130 (356)
T COG0482 77 NKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRE 130 (356)
T ss_pred HHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeec
Confidence 011 23344433 799999999998865
No 258
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=55.55 E-value=54 Score=30.06 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=42.0
Q ss_pred ceEEEEeeCCCCCCChhH--HHHHHhCC--CCeEEeCCCCCchHHHHHHHhc--cCCEEEEEecceeee
Q 024345 156 VEITCVISNHDRGPNSHV--IRFLERHG--IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQVNR 218 (269)
Q Consensus 156 ~~i~~Visn~~~~~~~~v--~~~a~~~g--IP~~~~~~~~~~~e~~l~~~l~--~~Dlivla~y~~il~ 218 (269)
.+|..+|.|+.. ..+.. .++.++.. ||++.=+ ..+.+++++|. +-|++|--+.+|+.-
T Consensus 61 ~~I~f~vVN~~~-~~s~~~~~~l~~r~~~~ipVyqq~----~~q~dvW~~L~G~kdD~~iyDRCGrL~~ 124 (238)
T PF04592_consen 61 SNISFMVVNHQG-EHSRLKYWELKRRVSEHIPVYQQD----ENQPDVWELLNGSKDDFLIYDRCGRLTY 124 (238)
T ss_pred CceEEEEEcCCC-cchhHHHHHHHHhCCCCCceecCC----ccccCHHHHhCCCcCcEEEEeccCcEEE
Confidence 479999999754 34444 35566665 9998633 22456889998 799999999999876
No 259
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=55.50 E-value=11 Score=30.46 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=31.8
Q ss_pred hhHHHHHHhCCCCeEEeC-CCCC-----c---------hHHHHHHHhccCCEEEEEecc
Q 024345 171 SHVIRFLERHGIPYHYLC-AKEN-----E---------REEELLELVQNTDFLVLARYM 214 (269)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~-~~~~-----~---------~e~~l~~~l~~~Dlivla~y~ 214 (269)
..+.++|++.|+|+.... .+.. . ......++++++|++++.|..
T Consensus 29 ~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 29 EELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp HHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 468999999999998765 3320 0 134566777899999999943
No 260
>PRK14561 hypothetical protein; Provisional
Probab=54.26 E-value=29 Score=30.22 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=32.8
Q ss_pred eeEEEEEeCCc-h-HHHHHHHhhhcCCCCceEEEEeeCCC-CCCChhHHHHHHhCCCCeEEeC
Q 024345 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 129 ~riav~~Sg~g-~-~l~~ll~~~~~g~l~~~i~~Visn~~-~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
|||+++.||.- + .+-.++... .++.++-.+.. ...-..+...|++.|+|++.++
T Consensus 1 mkV~ValSGG~DSslll~~l~~~------~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF------YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc------CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 68999999974 3 333333321 23444422221 1112358889999999999886
No 261
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.70 E-value=1.7e+02 Score=29.29 Aligned_cols=151 Identities=12% Similarity=0.156 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEE-EeCCCCCCHHHH--HHHHHhhhhhhccceeeeeecCCCCCeeE
Q 024345 55 IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF-IFDPIKWPREQM--DEDFFKLSKMFNAMRSVVRVPDIDPKYKV 131 (269)
Q Consensus 55 IVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v-~~p~~~~~~~~L--~e~L~~la~el~l~~~~~~~~~~~~~~ri 131 (269)
...+|+++|-+.++|+-=.......... .+.. .++. +++...+ ..-+.+|++-++--... +.+...+..|
T Consensus 31 ~L~eI~~ALLesDV~~~lV~~l~~nir~----~i~~~~~~~-G~nk~r~i~~~vf~eL~kl~dp~~~~--~~~~K~kpsV 103 (483)
T KOG0780|consen 31 MLKEICRALLESDVNPRLVKELRENIRK----IINLEKLAS-GVNKRRIIQKAVFDELVKLLDPGKSA--LQPKKGKPSV 103 (483)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH----Hhchhhhcc-ccCHHHHHHHHHHHHHHHHhCCCCcc--cccccCCCcE
Confidence 7888999998888887544332110000 0000 1122 3444332 22466666666532222 3445566677
Q ss_pred EEEEeCCc-----hHHHHHHHhhhcCCCCceEEEEeeCCCCCCCh--hHHHHHHhCCCCeEEeCCCCCch---HHHHHHH
Q 024345 132 AVLASKQE-----HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS--HVIRFLERHGIPYHYLCAKENER---EEELLEL 201 (269)
Q Consensus 132 av~~Sg~g-----~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~--~v~~~a~~~gIP~~~~~~~~~~~---e~~l~~~ 201 (269)
..|+.=+| +|-.-..+..++| ..+.+|+.+-=| +.+ .+.+.|.+.+||++-- ..+.+. ..+-.+.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG---~K~~LvcaDTFR-agAfDQLkqnA~k~~iP~ygs-yte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKG---YKVALVCADTFR-AGAFDQLKQNATKARVPFYGS-YTEADPVKIASEGVDR 178 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcC---CceeEEeecccc-cchHHHHHHHhHhhCCeeEec-ccccchHHHHHHHHHH
Confidence 77765554 4543323333344 466666665433 333 4788899999999962 111111 1222334
Q ss_pred hc--cCCEEEEEecceee
Q 024345 202 VQ--NTDFLVLARYMQVN 217 (269)
Q Consensus 202 l~--~~Dlivla~y~~il 217 (269)
++ ++|+|++---+|-=
T Consensus 179 fKke~fdvIIvDTSGRh~ 196 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHK 196 (483)
T ss_pred HHhcCCcEEEEeCCCchh
Confidence 44 78888886666543
No 262
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.07 E-value=67 Score=26.73 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=35.7
Q ss_pred EEEEeeCCCCCC------ChhHHHHHHhCCCCeEEeCCCC-C--chH-HHHHHHhccCCEEEEEe
Q 024345 158 ITCVISNHDRGP------NSHVIRFLERHGIPYHYLCAKE-N--ERE-EELLELVQNTDFLVLAR 212 (269)
Q Consensus 158 i~~Visn~~~~~------~~~v~~~a~~~gIP~~~~~~~~-~--~~e-~~l~~~l~~~Dlivla~ 212 (269)
...||+|+|+.. ...+.+.|++.|+++.++|... . +.+ +.+.+++..++-=|+|.
T Consensus 29 FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlay 93 (130)
T COG3453 29 FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAY 93 (130)
T ss_pred cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEee
Confidence 456899998742 2568999999999999999332 2 111 33445554555556653
No 263
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=52.80 E-value=54 Score=32.22 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=37.0
Q ss_pred CeeEEEEEeCCchHHHHHH------HhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC
Q 024345 128 KYKVAVLASKQEHCLVDFL------YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190 (269)
Q Consensus 128 ~~riav~~Sg~g~~l~~ll------~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~ 190 (269)
+.-+.+.+|++|++.+.+. +..+.+........++|++ ++++.++|+++|++++.++..
T Consensus 111 ~~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~----~s~L~~~a~~~g~~~f~ip~~ 175 (410)
T PRK03868 111 ENTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDP----DSKLEQFAKENNIKCFNIPKN 175 (410)
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecC----CchHHHhHHhcCCcEEecCCC
Confidence 3457889999995554442 2221110023344466765 456999999999999987743
No 264
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=52.58 E-value=1.2e+02 Score=27.69 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=66.0
Q ss_pred CCC-HHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc---hHHHHHHHhhhcCCCCceEEEEeeCCCCCCCh
Q 024345 96 KWP-REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS 171 (269)
Q Consensus 96 ~~~-~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g---~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~ 171 (269)
..+ .+.+++..++.+++.-. .-..-+.+||+.=|.. +.+..|+++++...+..+++--||
T Consensus 65 ~~~~~e~~~~~~~e~a~~va~--------~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVs-------- 128 (234)
T COG2243 65 TTDMREELEDAWEEAAAEVAA--------ELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVS-------- 128 (234)
T ss_pred CCchHHHHHHHHHHHHHHHHH--------HHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcc--------
Confidence 335 67777777777766421 1123357888887774 777788887765433344432233
Q ss_pred hHHHHHHhCCCCeEEeCCC-----CCchHHHHHHHhccCCEEEEEecceee
Q 024345 172 HVIRFLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQVN 217 (269)
Q Consensus 172 ~v~~~a~~~gIP~~~~~~~-----~~~~e~~l~~~l~~~Dlivla~y~~il 217 (269)
.+...|.++|+|...-+.. .+..+.++-+.+.+.|.+|+.-=.+-+
T Consensus 129 S~~a~aa~~~~pL~~g~~~l~Vlp~t~~~~~~~~~l~~~d~~VvMK~~~~~ 179 (234)
T COG2243 129 SFSACAARLGVPLVEGDDSLSVLPATRPDEELERALADFDTAVVMKVGRNF 179 (234)
T ss_pred hHHHHHHHhCCceeccCceeEEEeccCchhhHHhHHhhCCeEEEEecCCcH
Confidence 4688899999999875531 122344555566688998886555533
No 265
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=52.32 E-value=54 Score=29.79 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=37.9
Q ss_pred eeEEEEEeCC-c-hHHHHHHHhhhcCCC-CceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 129 YKVAVLASKQ-E-HCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 129 ~riav~~Sg~-g-~~l~~ll~~~~~g~l-~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
|||+|+|.|. | .-...|++ .|.. +.++ +++|+. +......++.++|+... . + ..+.++++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~---~g~~~~~~v--~v~~r~--~~~~~~~l~~~~g~~~~--~----~----~~e~~~~a 66 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLH---ANVVKGEQI--TVSNRS--NETRLQELHQKYGVKGT--H----N----KKELLTDA 66 (279)
T ss_pred CEEEEECccHHHHHHHHHHHH---CCCCCcceE--EEECCC--CHHHHHHHHHhcCceEe--C----C----HHHHHhcC
Confidence 6999999987 4 33344443 3422 2333 456652 22345666677776322 1 0 11223366
Q ss_pred CEEEEEecceeee
Q 024345 206 DFLVLARYMQVNR 218 (269)
Q Consensus 206 Dlivla~y~~il~ 218 (269)
|+|+++---+.+.
T Consensus 67 DvVilav~p~~~~ 79 (279)
T PRK07679 67 NILFLAMKPKDVA 79 (279)
T ss_pred CEEEEEeCHHHHH
Confidence 7777765544433
No 266
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=51.65 E-value=59 Score=31.37 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCeeEEEEEeCCc-hHHH-HHHHhhhcCCCCceEEEEeeCCCC----CC-C-------hhHHHHHHhCCCCeEEeC
Q 024345 127 PKYKVAVLASKQE-HCLV-DFLYGWQEGKLPVEITCVISNHDR----GP-N-------SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 127 ~~~riav~~Sg~g-~~l~-~ll~~~~~g~l~~~i~~Visn~~~----~~-~-------~~v~~~a~~~gIP~~~~~ 188 (269)
.+.||+|..||.- +... .||.+ +| .++.+|...+=+ .. . ..+...|+..|||+++++
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~--~g---~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vn 74 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAA--RG---YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVN 74 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHh--cC---CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEe
Confidence 5679999999974 4443 44443 45 678888764321 00 1 357889999999999987
No 267
>PRK09084 aspartate kinase III; Validated
Probab=51.55 E-value=95 Score=30.71 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=29.7
Q ss_pred eEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 42 ~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
-..++|.|. +.+|+.+++.+.|+++|+||.-+++
T Consensus 306 i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 306 QTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred EEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec
Confidence 456788765 6899999999999999999999976
No 268
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=51.49 E-value=60 Score=30.96 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=36.3
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCC-------------ChhHHHHHHhCCCCeEEeC
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------------NSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~-------------~~~v~~~a~~~gIP~~~~~ 188 (269)
+||++..||.- +.+-.++.. .| .++.++..+..... -..+.++|+++|||++.++
T Consensus 1 ~kVlValSGGvDSsvla~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd 70 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE--QG---YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVD 70 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH--cC---CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEe
Confidence 48999999984 344444432 34 56777755542100 1257899999999999887
No 269
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=50.71 E-value=2.1e+02 Score=27.10 Aligned_cols=122 Identities=10% Similarity=0.056 Sum_probs=72.6
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeee
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~ 120 (269)
.+=++.|+|+-.+...+.|+.++...++=....+.. ......|++++ -| + +..++.++.+.++ |
T Consensus 54 ~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~-~~~~~~~~i~~---~P--~-----~~~Ai~diI~~~~-----W 117 (364)
T cd06390 54 SKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFP-VDTSNQFVLQL---RP--E-----LQDALISVIEHYK-----W 117 (364)
T ss_pred hcCceEEEccCChhHHHHHHHhhcCCCCCceecCCC-CCCCCceEEEe---Ch--h-----HHHHHHHHHHHcC-----C
Confidence 344889999999999999999998888776654321 11233554333 13 1 6778888887775 4
Q ss_pred eecCCCCCeeEEEEEeCC-c-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC-hhHHHHHHhCCCCeEEeC
Q 024345 121 RVPDIDPKYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 121 ~~~~~~~~~riav~~Sg~-g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~-~~v~~~a~~~gIP~~~~~ 188 (269)
.||+++-... | ..+++|++..+.. +.+|..+..-+....+ ..+++..++.+.-+++++
T Consensus 118 --------~~v~iIYd~d~g~~~lq~l~~~~~~~--~~~I~~~~~~~~~~~d~~~~L~~ik~~~~rvIVl~ 178 (364)
T cd06390 118 --------QKFVYIYDADRGLSVLQKVLDTAAEK--NWQVTAVNILTTTEEGYRKLFQDLDKKKERLIVVD 178 (364)
T ss_pred --------cEEEEEEeCCccHHHHHHHHHhhhcc--CceeeEEEeecCChHHHHHHHHhccccCCeEEEEE
Confidence 4777777655 3 6677877765443 3445433222211011 234444555566666665
No 270
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=50.24 E-value=28 Score=26.54 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=30.1
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
+++|....+.++ ++|+ +..+.+-.|-+..-..++..+|+.++||+.+..
T Consensus 9 lv~G~~~vlkaI----k~gk--akLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 9 RVVGAKQTLKAI----TNCN--VLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred EEEchHHHHHHH----HcCC--eeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 556665666554 3463 555555555421111468889999999997654
No 271
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=50.15 E-value=2.5e+02 Score=27.35 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=30.2
Q ss_pred ceEEEEEEcCCC--cChHHHHHHHHHhCCCeEeEeeee
Q 024345 41 THGIHVFHCPDE--VGIVAKLSECIASRGGNILAADVF 76 (269)
Q Consensus 41 ~~~iItV~G~Dr--pGIVa~VS~~La~~giNI~dl~~~ 76 (269)
.-..++|.|.+- +|+.+++.+.|+++|+||.-+.|.
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~ 338 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQS 338 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 455788888654 699999999999999999999763
No 272
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=49.96 E-value=34 Score=28.13 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 54 GIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 54 GIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
.=|..|.+.|.++|+.|..+..+... ....|+|++.-.- +...|...+.+
T Consensus 68 ~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~g-----dp~~lA~~vr~ 118 (123)
T PF07485_consen 68 DEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGVG-----DPAKLARKVRA 118 (123)
T ss_pred HHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEecC-----CHHHHHHHHHH
Confidence 45899999999999999999998543 3458888887552 34455444443
No 273
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=49.95 E-value=90 Score=29.29 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=32.6
Q ss_pred HHhCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEecce-----------------eee---cccccccccccCCCcccc
Q 024345 177 LERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ-----------------VNR---IRLYVAQLFSCLVTEQLT 236 (269)
Q Consensus 177 a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y~~-----------------il~---l~~~~~~~iN~~~~~iHp 236 (269)
+++.|..+...+ ++.+.++++|+|.+-.|.+ .++ ++..+.+++= .||
T Consensus 197 ~~~~g~~~~~~~--------d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~iv-----mHp 263 (304)
T TIGR00658 197 AKENGGSVELTH--------DPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIF-----MHC 263 (304)
T ss_pred HHHcCCeEEEEc--------CHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEE-----ECC
Confidence 455666555432 2345666899998865431 111 3444445666 788
Q ss_pred CCCCCCCCCc
Q 024345 237 VLNSSLGGIN 246 (269)
Q Consensus 237 SLLP~~rG~~ 246 (269)
||.+||..
T Consensus 264 --lP~~rg~E 271 (304)
T TIGR00658 264 --LPAHRGEE 271 (304)
T ss_pred --CCCCCCce
Confidence 89999843
No 274
>PRK00536 speE spermidine synthase; Provisional
Probab=49.80 E-value=29 Score=32.09 Aligned_cols=44 Identities=5% Similarity=0.019 Sum_probs=32.0
Q ss_pred CCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhC
Q 024345 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180 (269)
Q Consensus 125 ~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~ 180 (269)
...++||.|+|.|+|..++++|+. + .+|+ .+.-| ..|.+.|+++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh---~---~~v~--mVeID----~~Vv~~~k~~ 113 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY---D---THVD--FVQAD----EKILDSFISF 113 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc---C---CeeE--EEECC----HHHHHHHHHH
Confidence 346789999999999999999985 1 2444 44432 2578888885
No 275
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=49.77 E-value=28 Score=27.19 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=28.8
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
+.+|...++.++ ++|+ +..+.+-.|-+..-..++..+|+.++||++.+.
T Consensus 17 l~~G~~~v~kai----~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~ 65 (99)
T PRK01018 17 VILGSKRTIKAI----KLGK--AKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYE 65 (99)
T ss_pred EEEcHHHHHHHH----HcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 455655555544 3463 455544444321112468899999999987653
No 276
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=49.61 E-value=49 Score=32.51 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=41.6
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCC-CCeEEeCCCCCchHHHHHHHhc
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~g-IP~~~~~~~~~~~e~~l~~~l~ 203 (269)
..+||.|+|+|+- .....|.+ .| .. ...|+|+ ....+.++|+++| ..++.+ +++.+.+.
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~---~g---~~-~I~V~nR---t~~ra~~La~~~~~~~~~~~--------~~l~~~l~ 241 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTA---LA---PK-QIMLANR---TIEKAQKITSAFRNASAHYL--------SELPQLIK 241 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHH---cC---CC-EEEEECC---CHHHHHHHHHHhcCCeEecH--------HHHHHHhc
Confidence 3468999999873 33333332 34 21 2467887 3456788999886 543322 13455666
Q ss_pred cCCEEEEEe
Q 024345 204 NTDFLVLAR 212 (269)
Q Consensus 204 ~~Dlivla~ 212 (269)
++|+||.+-
T Consensus 242 ~aDiVI~aT 250 (414)
T PRK13940 242 KADIIIAAV 250 (414)
T ss_pred cCCEEEECc
Confidence 888888764
No 277
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=49.58 E-value=1.1e+02 Score=31.38 Aligned_cols=69 Identities=10% Similarity=0.188 Sum_probs=37.2
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhh-cCCCCceEEEEeeCCCCC-CChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQ-EGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~-~g~l~~~i~~Visn~~~~-~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
...|||++|-.. +..+..++.... .|. .++. ++.++.. ++..+.+.|+++|..+...+ ++.+.++
T Consensus 173 ~glkVa~vGD~~~~rva~Sl~~~l~~~g~--~~v~--l~~P~~~~~p~~~~~~a~~~G~~v~i~~--------d~~eav~ 240 (525)
T PRK13376 173 SFIHIALVGDLLHGRTVHSKVNGLKIFKN--VKVD--LIAPEELAMPEHYVEKMKKNGFEVRIFS--------SIEEYLS 240 (525)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHhcCC--cEEE--EECCccccCCHHHHHHHHHcCCeEEEEc--------CHHHHhc
Confidence 457999999763 222223333221 231 3443 4444332 34556788888887776543 2335566
Q ss_pred cCCE
Q 024345 204 NTDF 207 (269)
Q Consensus 204 ~~Dl 207 (269)
++|+
T Consensus 241 ~AD~ 244 (525)
T PRK13376 241 QKDV 244 (525)
T ss_pred cCCc
Confidence 7883
No 278
>PRK10867 signal recognition particle protein; Provisional
Probab=49.17 E-value=2.7e+02 Score=27.64 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCH-HHHHHHHH-hhhhhhccceeeeeecCCCCCeeEE
Q 024345 55 IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPR-EQMDEDFF-KLSKMFNAMRSVVRVPDIDPKYKVA 132 (269)
Q Consensus 55 IVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~-~~L~e~L~-~la~el~l~~~~~~~~~~~~~~ria 132 (269)
.+.++-..|-+.++|..-....+..-..... .-.++. +.+. +.+.+.+. ++.+-++-....+.+ ...+.++.
T Consensus 30 ~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~---~~~~~~-~~~~~~~~~~~v~~el~~~l~~~~~~~~~--~~~~p~vI 103 (433)
T PRK10867 30 ALREVRLALLEADVNLPVVKDFIARVKEKAV---GQEVLK-SLTPGQQVIKIVNDELVEILGGENSELNL--AAKPPTVI 103 (433)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh---hccccc-cCCcHHHHHHHHHHHHHHHhCCCcceeee--cCCCCEEE
Confidence 4777888898888887655444221000000 001111 2222 22333333 233333311111222 23445666
Q ss_pred EEEeCCc----hHHHHHHHhhh-c-CCCCceEEEEeeCCCCCCCh--hHHHHHHhCCCCeEEeCCCCCchH--HHHHHHh
Q 024345 133 VLASKQE----HCLVDFLYGWQ-E-GKLPVEITCVISNHDRGPNS--HVIRFLERHGIPYHYLCAKENERE--EELLELV 202 (269)
Q Consensus 133 v~~Sg~g----~~l~~ll~~~~-~-g~l~~~i~~Visn~~~~~~~--~v~~~a~~~gIP~~~~~~~~~~~e--~~l~~~l 202 (269)
+|+..+| +....|..... . | ..+..|-++.-+ +.+ ....+|++.|||++......+..+ .+.++..
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G---~kV~lV~~D~~R-~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKK---KKVLLVAADVYR-PAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcC---CcEEEEEccccc-hHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 6666665 34444443332 3 3 456666666433 222 345679999999986532111111 1222333
Q ss_pred c--cCCEEEEEeccee
Q 024345 203 Q--NTDFLVLARYMQV 216 (269)
Q Consensus 203 ~--~~Dlivla~y~~i 216 (269)
+ +.|+|++-.-++.
T Consensus 180 ~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 180 KENGYDVVIVDTAGRL 195 (433)
T ss_pred HhcCCCEEEEeCCCCc
Confidence 3 6899888666654
No 279
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=48.78 E-value=1.3e+02 Score=30.09 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.6
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~ 77 (269)
....|+|.|. +++|..++|.+.|+++|+|+.-+.|..
T Consensus 306 ~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~ 345 (447)
T COG0527 306 NVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSI 345 (447)
T ss_pred CeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEecc
Confidence 3445666665 345999999999999999999998853
No 280
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=48.63 E-value=74 Score=26.33 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=36.5
Q ss_pred eEEEEEeCCc--hHHHHHHHhhhcCCC--CceEEEEeeCCCCCC-----ChhHHHHHHhCCCCeEEeC
Q 024345 130 KVAVLASKQE--HCLVDFLYGWQEGKL--PVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 130 riav~~Sg~g--~~l~~ll~~~~~g~l--~~~i~~Visn~~~~~-----~~~v~~~a~~~gIP~~~~~ 188 (269)
||+|..||.. ..+-.++..... .. +.++.++..|+.-.. ...+.++|+++|||+..++
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQR-RYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVS 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHh-hcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEe
Confidence 6899999985 344444443322 11 356777766642211 1357888999999999876
No 281
>PLN02688 pyrroline-5-carboxylate reductase
Probab=48.56 E-value=78 Score=28.22 Aligned_cols=47 Identities=11% Similarity=0.298 Sum_probs=24.9
Q ss_pred eeEEEEEeCC-c-hHHHHHHHhhhcCCCC-ceEEEEee-CCCCCCChhHHHHHHhCCCCe
Q 024345 129 YKVAVLASKQ-E-HCLVDFLYGWQEGKLP-VEITCVIS-NHDRGPNSHVIRFLERHGIPY 184 (269)
Q Consensus 129 ~riav~~Sg~-g-~~l~~ll~~~~~g~l~-~~i~~Vis-n~~~~~~~~v~~~a~~~gIP~ 184 (269)
|||+|+|.|. | .-...|++ .|.++ .+| +++ |+. ... .+.+.++|+.+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~---~g~~~~~~i--~v~~~r~---~~~-~~~~~~~g~~~ 51 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVA---SGVVPPSRI--STADDSN---PAR-RDVFQSLGVKT 51 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHH---CCCCCcceE--EEEeCCC---HHH-HHHHHHcCCEE
Confidence 6899999887 4 34445544 34222 233 345 552 222 34455677744
No 282
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=48.16 E-value=61 Score=29.23 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=37.3
Q ss_pred CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---hhHHHHHHhCCCCeEEeC
Q 024345 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---~~v~~~a~~~gIP~~~~~ 188 (269)
..|++|..||.- +.+-.++.. .| .++.+|..+.+..+. ..+.++|++.|||++.++
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~--~g---~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~ 72 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSD--AG---TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVK 72 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHH--hC---CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 358999999974 444444432 24 467777666532121 357899999999999886
No 283
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.09 E-value=1.2e+02 Score=22.80 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=41.9
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
..+.|.=|+|||-..+..+.| .-+.||.+.+-... ++... +-+-+.+++ . +.+++.+.|++.
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l-~p~~~ITeF~YR~~--~~~~a~vlvGi~~~~-~-~~~~l~~~l~~~ 64 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNEL-LPKWNITLFHYRNQ--GSDYGRVLVGIQVPD-A-DLDELKERLDAL 64 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHh-CCCCeEeEEEEecC--CCCceeEEEEEEeCh-H-HHHHHHHHHHHc
Confidence 456777899999999999999 34789999987532 22222 223345554 3 667777777664
No 284
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=47.90 E-value=53 Score=30.10 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=37.3
Q ss_pred eeEEEEEeCC-c-hHHHHHHHhhhcCCCC-ceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 129 YKVAVLASKQ-E-HCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 129 ~riav~~Sg~-g-~~l~~ll~~~~~g~l~-~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
+||+|+|.|. | +-...|++ .|..+ .+| .++++. ......+++++|+-.. +. .. +.++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~---~g~~~~~~I--~v~~r~---~~~~~~l~~~~g~~~~--~~-----~~---e~~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN---KNIVSPDQI--ICSDLN---VSNLKNASDKYGITIT--TN-----NN---EVANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH---CCCCCCceE--EEECCC---HHHHHHHHHhcCcEEe--CC-----cH---HHHhhC
Confidence 5899999998 4 44445544 34322 233 345552 2345555556886322 11 11 223367
Q ss_pred CEEEEEecceeee
Q 024345 206 DFLVLARYMQVNR 218 (269)
Q Consensus 206 Dlivla~y~~il~ 218 (269)
|+|+++=--+.+.
T Consensus 65 DiIiLavkP~~~~ 77 (272)
T PRK12491 65 DILILSIKPDLYS 77 (272)
T ss_pred CEEEEEeChHHHH
Confidence 8877765444433
No 285
>PRK14449 acylphosphatase; Provisional
Probab=47.77 E-value=1e+02 Score=23.56 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|--...+|.++++.=|+...++ -.|-+.+.|+...++++++.+++|...+.|.-+-.
T Consensus 17 GFR~fv~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~~ 75 (90)
T PRK14449 17 GLRYSVYQKAVSLGITGYAENLYD----GSVEVVAEGDEENIKELINFIKTGLRWARVDNVEE 75 (90)
T ss_pred ChHHHHHHHHHHcCCEEEEEECCC----CeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 367778889999998776543322 27889999998999999999988864466665543
No 286
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=47.52 E-value=65 Score=28.75 Aligned_cols=15 Identities=7% Similarity=0.220 Sum_probs=11.1
Q ss_pred CeeEEEEEeCC-chHH
Q 024345 128 KYKVAVLASKQ-EHCL 142 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l 142 (269)
++||+|+|.|. |..+
T Consensus 2 mm~I~iIG~G~mG~~l 17 (267)
T PRK11880 2 MKKIGFIGGGNMASAI 17 (267)
T ss_pred CCEEEEEechHHHHHH
Confidence 47899999987 4433
No 287
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=47.52 E-value=33 Score=34.12 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=32.1
Q ss_pred CcceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 39 ~~~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
...-..|+++|. .+||+.+++.+.|++.++||.-+++
T Consensus 380 ~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss 419 (447)
T COG0527 380 EEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS 419 (447)
T ss_pred eCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc
Confidence 335568899998 6789999999999999999999985
No 288
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=47.42 E-value=1.5e+02 Score=26.66 Aligned_cols=62 Identities=6% Similarity=-0.058 Sum_probs=40.8
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
.+.+++.+.+.. +.++.+.+.++++.+.+++........ .+.+++.++. ..+..++-+.|.+
T Consensus 144 ~~~~~i~~~~~~--~~~i~~~l~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~L~~ 205 (215)
T PRK09977 144 HYHLQLTLVNGN--VVSMLDWFKQQKIKTDLVSLQENEDHE--VVAIDITLHA-TTSIEDLYRLLKG 205 (215)
T ss_pred cEEEEEEEcccc--HHHHHHHHHHcCceEEEEEEEecCCCc--EEEEEEEECC-CCCHHHHHHHHhc
Confidence 355566665443 688899999999999999886332222 3567777774 5566666554444
No 289
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=47.16 E-value=81 Score=25.49 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=31.3
Q ss_pred EEEeCCchHHHHHHH----hhhcCCC-CceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 133 VLASKQEHCLVDFLY----GWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 133 v~~Sg~g~~l~~ll~----~~~~g~l-~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
=+|+.++...+++.+ .+++..+ +..|..+.|-.-+.....++++|+++|+|++.++
T Consensus 5 GiGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~ 65 (121)
T PF01890_consen 5 GIGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFS 65 (121)
T ss_dssp EEEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-
T ss_pred EeCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEEC
Confidence 355666644433333 3333333 3567777665433234678999999999999986
No 290
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.84 E-value=88 Score=30.25 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=44.4
Q ss_pred CCeeEEEEEeCCc-hHHHHHHHhhhcCC----CCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC-CCCC---chHHH
Q 024345 127 PKYKVAVLASKQE-HCLVDFLYGWQEGK----LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN---EREEE 197 (269)
Q Consensus 127 ~~~riav~~Sg~g-~~l~~ll~~~~~g~----l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~-~~~~---~~e~~ 197 (269)
.++||+|+|+|.+ +.|-.++.. +|. ..++|..-.-+.+- ..-...+.-.+.+....|++ .+.. ....+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~--n~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE--NTQRNYIFHNEVRMWVLEEIV-EGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCcccCCCCeEEEEEecccc-cchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 5589999999995 777666642 331 11355544333210 01122333333333223333 1111 01123
Q ss_pred HHHHhccCCEEEEEecceeee
Q 024345 198 LLELVQNTDFLVLARYMQVNR 218 (269)
Q Consensus 198 l~~~l~~~Dlivla~y~~il~ 218 (269)
+.+.++++|+||+|==.+.++
T Consensus 87 l~eav~~aDiIvlAVPsq~l~ 107 (365)
T PTZ00345 87 LKEAVEDADLLIFVIPHQFLE 107 (365)
T ss_pred HHHHHhcCCEEEEEcChHHHH
Confidence 445666899999986555555
No 291
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=46.63 E-value=81 Score=28.30 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=21.5
Q ss_pred eeEEEEEeCC--c-hHHHHHHHhhhcCCCCceEEEEeeCCCC
Q 024345 129 YKVAVLASKQ--E-HCLVDFLYGWQEGKLPVEITCVISNHDR 167 (269)
Q Consensus 129 ~riav~~Sg~--g-~~l~~ll~~~~~g~l~~~i~~Visn~~~ 167 (269)
||||+++-.. | ..+++.++ +| +++++++-|+.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~---RG---HeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALK---RG---HEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHh---CC---CeeEEEEeChHh
Confidence 6888887543 3 33444333 56 799999988743
No 292
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=46.21 E-value=1.4e+02 Score=28.05 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=28.6
Q ss_pred EEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 133 VLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 133 v~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
||.-+.. .-+.-|..+.++|. +++|. |.-.+|........+...+.|||+.+++
T Consensus 119 ILT~~~S~tv~~~l~~a~~~~~-~f~V~-v~EsrP~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 119 VMTHCNSEAALSVIKTAFEQGK-DIEVI-ATETRPRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-cEEEE-EecCCCcchHHHHHHHHHHCCCCEEEEe
Confidence 4444443 44444444455554 34544 3333433222334556677899999987
No 293
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=45.79 E-value=93 Score=30.65 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=46.5
Q ss_pred eEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCC----CCCCChhHHHHHHhCCCCeEEeCCCCC--chHHHHHHHhc
Q 024345 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH----DRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLELVQ 203 (269)
Q Consensus 130 riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~----~~~~~~~v~~~a~~~gIP~~~~~~~~~--~~e~~l~~~l~ 203 (269)
|+.=.++-+-..+.+.=.++.++ ..-+.-|.+.+ ...+-..+.+.|.++|+|+++=..... +.|..+-+.++
T Consensus 134 ~l~EvG~tn~t~~~d~~~AIne~--ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la 211 (395)
T COG1921 134 KLVEVGTTNRTHLKDYELAINEN--TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALA 211 (395)
T ss_pred EEEEecccCcCCHHHHHHHhccC--CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHh
Confidence 34444444444444443334333 24455566653 112335589999999999998323211 12455666777
Q ss_pred -cCCEEEEEe
Q 024345 204 -NTDFLVLAR 212 (269)
Q Consensus 204 -~~Dlivla~ 212 (269)
++|+++..|
T Consensus 212 ~GaDLV~~Sg 221 (395)
T COG1921 212 LGADLVSFSG 221 (395)
T ss_pred cCCCEEEEec
Confidence 899998765
No 294
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=45.77 E-value=29 Score=30.48 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-- 203 (269)
.++||+++|.|. |..+...+.. ...++++++++...+. . ... .-.|+|+... +++.++++
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~---~~~g~~ivgv~D~d~~---~-~~~--~i~g~~v~~~--------~~l~~li~~~ 145 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGF---EKRGFKIVAAFDVDPE---K-IGT--KIGGIPVYHI--------DELEEVVKEN 145 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhc---ccCCcEEEEEEECChh---h-cCC--EeCCeEEcCH--------HHHHHHHHHC
Confidence 457999999998 4444433221 2235789998876531 1 100 1135554321 23445555
Q ss_pred cCCEEEEEe
Q 024345 204 NTDFLVLAR 212 (269)
Q Consensus 204 ~~Dlivla~ 212 (269)
++|.++++-
T Consensus 146 ~iD~ViIa~ 154 (213)
T PRK05472 146 DIEIGILTV 154 (213)
T ss_pred CCCEEEEeC
Confidence 588877764
No 295
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=45.69 E-value=97 Score=29.89 Aligned_cols=58 Identities=21% Similarity=0.073 Sum_probs=38.1
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCC--C---hhHHHHHHhCCCCeEEeCC
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--N---SHVIRFLERHGIPYHYLCA 189 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~--~---~~v~~~a~~~gIP~~~~~~ 189 (269)
+..||++..||.- +.+..++.. .| .++.+|..+..... . ..+.++|+++|||++.++.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~--~G---~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~ 68 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE--AG---YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDA 68 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH--cC---CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEec
Confidence 4469999999984 444444542 34 57877765431101 1 2368899999999999873
No 296
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=45.53 E-value=80 Score=30.33 Aligned_cols=80 Identities=23% Similarity=0.220 Sum_probs=43.9
Q ss_pred CeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC-CC---CCchHHHHHHHh
Q 024345 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AK---ENEREEELLELV 202 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~-~~---~~~~e~~l~~~l 202 (269)
++||+|+|+|. |+.|-.++.. +| +++..-.-++ .-+.+.-..+ --..|++ .. .-....++.+.+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~--ng---~~V~lw~r~~-----~~~~~i~~~~-~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR--NG---HEVRLWGRDE-----EIVAEINETR-ENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh--cC---CeeEEEecCH-----HHHHHHHhcC-cCccccCCccCCcccccccCHHHHH
Confidence 47999999999 4777766653 44 4554433332 1233333322 1222222 11 112234566677
Q ss_pred ccCCEEEEEecceeee
Q 024345 203 QNTDFLVLARYMQVNR 218 (269)
Q Consensus 203 ~~~Dlivla~y~~il~ 218 (269)
+++|+||++==.+-++
T Consensus 70 ~~ad~iv~avPs~~~r 85 (329)
T COG0240 70 DGADIIVIAVPSQALR 85 (329)
T ss_pred hcCCEEEEECChHHHH
Confidence 7899999986666555
No 297
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=44.97 E-value=2.3e+02 Score=30.43 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=28.1
Q ss_pred eEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (269)
Q Consensus 42 ~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~ 75 (269)
-..|++.+. +++|+.++|-+.|+++|+||.-+++
T Consensus 322 v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~s 358 (861)
T PRK08961 322 IVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISS 358 (861)
T ss_pred EEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEEc
Confidence 346677544 6899999999999999999988865
No 298
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=44.97 E-value=78 Score=29.05 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=15.3
Q ss_pred hHHHHHHhCCCCeEEeC
Q 024345 172 HVIRFLERHGIPYHYLC 188 (269)
Q Consensus 172 ~v~~~a~~~gIP~~~~~ 188 (269)
-+..+|++++||+.+++
T Consensus 200 tA~~l~~~~~i~i~Vfn 216 (238)
T COG0528 200 TAFSLARDNGIPIIVFN 216 (238)
T ss_pred HHHHHHHHcCCcEEEEe
Confidence 46889999999999998
No 299
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=44.66 E-value=76 Score=29.64 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=44.5
Q ss_pred eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhC-CCCeEEeC-CCCCchHHHHHHHhc---
Q 024345 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLC-AKENEREEELLELVQ--- 203 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~-gIP~~~~~-~~~~~~e~~l~~~l~--- 203 (269)
+||.++|-|.|..++.+++. +. ..+++.|=- +..|+++|+++ .+|....+ ++-+-..++-.+.++
T Consensus 78 k~VLiiGgGdG~tlRevlkh---~~-ve~i~~VEI------D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKH---LP-VERITMVEI------DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhc---CC-cceEEEEEc------CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 69999999999999999984 21 234444433 33588998887 33332111 111101122233333
Q ss_pred -cCCEEEEEecce
Q 024345 204 -NTDFLVLARYMQ 215 (269)
Q Consensus 204 -~~Dlivla~y~~ 215 (269)
..|+|++-.+--
T Consensus 148 ~~fDvIi~D~tdp 160 (282)
T COG0421 148 EKFDVIIVDSTDP 160 (282)
T ss_pred CcCCEEEEcCCCC
Confidence 578888766655
No 300
>PLN02256 arogenate dehydrogenase
Probab=44.49 E-value=1e+02 Score=28.81 Aligned_cols=46 Identities=11% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCe
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~ 184 (269)
+++||+|+|.|. |..+...+.+ .| .+|.+ .+++ + ..+.|+++|+.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~--~G---~~V~~--~d~~--~---~~~~a~~~gv~~ 81 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVK--QG---HTVLA--TSRS--D---YSDIAAELGVSF 81 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHh--CC---CEEEE--EECc--c---HHHHHHHcCCee
Confidence 567999999987 4444333332 34 35543 3331 1 246677777643
No 301
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=44.46 E-value=47 Score=26.63 Aligned_cols=34 Identities=6% Similarity=0.240 Sum_probs=22.7
Q ss_pred eeEEEEEe-CC-chHHHHHHHhhhcCCCCceEEEEeeCCC
Q 024345 129 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHD 166 (269)
Q Consensus 129 ~riav~~S-g~-g~~l~~ll~~~~~g~l~~~i~~Visn~~ 166 (269)
+||++.|. |+ |+-+...+.. .. ..++++++..++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~--~~--~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILE--SP--GFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH--ST--TEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHh--cC--CcEEEEEEecCC
Confidence 68999988 65 5555444432 23 379999988774
No 302
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=43.98 E-value=1.2e+02 Score=29.52 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=34.5
Q ss_pred ceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchH---HHHHHHhccCCEEEEEec
Q 024345 156 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE---EELLELVQNTDFLVLARY 213 (269)
Q Consensus 156 ~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e---~~l~~~l~~~Dlivla~y 213 (269)
+.+++-+.+.- + --.+.|+..|+++...++-..-.+ ++..+.++++|.+|++++
T Consensus 291 ~~v~~g~l~~~---d-~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~ 347 (402)
T PRK09536 291 ASVSVGPVPEG---D-TAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGV 347 (402)
T ss_pred CeEEEecCcCc---c-hhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCC
Confidence 56766555542 2 246889999999997653222112 344455559999999775
No 303
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=43.90 E-value=1.3e+02 Score=27.82 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=28.2
Q ss_pred EEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 133 VLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 133 v~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
|+.-+..+.++.++..- .. ..++ .|.-.+|........+...++|||+.+++
T Consensus 90 ILT~s~S~~v~~~l~~~--~~-~~~V-~v~ESrP~~eG~~~a~~L~~~GI~vtli~ 141 (253)
T PRK06372 90 IGTISSSQVLKAFISSS--EK-IKSV-YILESRPMLEGIDMAKLLVKSGIDVVLLT 141 (253)
T ss_pred EEEeCCcHHHHHHHHhc--CC-CCEE-EEecCCCchHHHHHHHHHHHCCCCEEEEe
Confidence 34444567888887542 21 1233 23333433222334555566899999986
No 304
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=43.76 E-value=1.5e+02 Score=27.71 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=27.4
Q ss_pred chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 139 g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
++-+..|..+.++|+ .++|. |.-.+|............+.|||+.+++
T Consensus 120 ~tv~~~l~~A~~~gk-~~~V~-v~EsrP~~qG~~la~eL~~~GI~vtlI~ 167 (275)
T PRK08335 120 SAVLEILKTAKRKGK-RFKVI-LTESAPDYEGLALANELEFLGIEFEVIT 167 (275)
T ss_pred HHHHHHHHHHHHcCC-ceEEE-EecCCCchhHHHHHHHHHHCCCCEEEEe
Confidence 455555555555664 34443 3333433334455555667899999987
No 305
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.45 E-value=1.4e+02 Score=25.59 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHH
Q 024345 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178 (269)
Q Consensus 99 ~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~ 178 (269)
...+.+.+++.++++|. ++-++.+.........++...... +.++|..... ++....+.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~--------------~~~~~~~~~~~~~~~~i~~~~~~~----vdgiii~~~~-~~~~~~~~~~ 74 (266)
T cd06278 14 YSELLEALSRALQARGY--------------QPLLINTDDDEDLDAALRQLLQYR----VDGVIVTSGT-LSSELAEECR 74 (266)
T ss_pred HHHHHHHHHHHHHHCCC--------------eEEEEcCCCCHHHHHHHHHHHHcC----CCEEEEecCC-CCHHHHHHHh
Confidence 46667777777777763 333333333223333343332232 3233332211 3445678888
Q ss_pred hCCCCeEEeC
Q 024345 179 RHGIPYHYLC 188 (269)
Q Consensus 179 ~~gIP~~~~~ 188 (269)
+.|||+..++
T Consensus 75 ~~~ipvV~~~ 84 (266)
T cd06278 75 RNGIPVVLIN 84 (266)
T ss_pred hcCCCEEEEC
Confidence 9999999887
No 306
>PRK14447 acylphosphatase; Provisional
Probab=43.32 E-value=1.1e+02 Score=23.75 Aligned_cols=59 Identities=8% Similarity=0.006 Sum_probs=43.4
Q ss_pred HHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 102 L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
+|--...+|.++++.=|++..++ . -+|-+.+.|+...++++++.+++|.-.++|..+-.
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~d--G-~~Vei~~qG~~~~l~~f~~~l~~gp~~a~V~~v~~ 77 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSD--G-RTVEAVLEGPRDAVLKVIEWARVGPPGARVEDVEV 77 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCC--C-CEEEEEEEeCHHHHHHHHHHHhhCCCCeEEEEEEE
Confidence 67778889999998877653322 2 14778888888999999998887765567766543
No 307
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=43.27 E-value=58 Score=31.24 Aligned_cols=55 Identities=22% Similarity=0.142 Sum_probs=35.5
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCC-C--C-C---------ChhHHHHHHhCCCCeEEeC
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHD-R--G-P---------NSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~-~--~-~---------~~~v~~~a~~~gIP~~~~~ 188 (269)
+||++..||.- +.+..++.. .| .++.+|..+.- + . . -..+.+.|+.+|||++.++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid 70 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVN 70 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 58999999974 333344432 34 57888766310 0 0 0 0246788999999999886
No 308
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=43.17 E-value=1.2e+02 Score=25.06 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=43.2
Q ss_pred eeEEEEEeCCc--h-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 129 YKVAVLASKQE--H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 129 ~riav~~Sg~g--~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
+||.|..+|+- + -.++++.....+ +.+.-+++.......++..+.+.++++||+....-.+.- ++ +.++++
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~~-~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~h~s~~l--t~---~~~~~~ 76 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLPG-VKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGRKL--TA---EMARNY 76 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcCC-eEEEcccccCCCCCCCCHHHHHHHHHcCCCcCCCccCcC--CH---HHHhhC
Confidence 68888888884 3 345666543221 222222332111112567789999999998643221111 11 123378
Q ss_pred CEEEEEec
Q 024345 206 DFLVLARY 213 (269)
Q Consensus 206 Dlivla~y 213 (269)
|+|++..-
T Consensus 77 DlIl~M~~ 84 (144)
T PRK11391 77 DLILAMES 84 (144)
T ss_pred CEEEECCH
Confidence 99999754
No 309
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.99 E-value=49 Score=28.95 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=42.6
Q ss_pred hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc----cCCEEEEEecce
Q 024345 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ----NTDFLVLARYMQ 215 (269)
Q Consensus 140 ~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~----~~Dlivla~y~~ 215 (269)
.-+++-++-++... -.+.|+||+ ..+.|..++++.|||+.+--.|.. ...+.+.++ .++=+|+.| -|
T Consensus 49 pe~~~W~~e~k~~g---i~v~vvSNn---~e~RV~~~~~~l~v~fi~~A~KP~--~~~fr~Al~~m~l~~~~vvmVG-Dq 119 (175)
T COG2179 49 PELRAWLAELKEAG---IKVVVVSNN---KESRVARAAEKLGVPFIYRAKKPF--GRAFRRALKEMNLPPEEVVMVG-DQ 119 (175)
T ss_pred HHHHHHHHHHHhcC---CEEEEEeCC---CHHHHHhhhhhcCCceeecccCcc--HHHHHHHHHHcCCChhHEEEEc-ch
Confidence 34555554433321 234578886 678899999999999998443322 223444443 566677766 36
Q ss_pred eee
Q 024345 216 VNR 218 (269)
Q Consensus 216 il~ 218 (269)
+++
T Consensus 120 L~T 122 (175)
T COG2179 120 LFT 122 (175)
T ss_pred hhh
Confidence 666
No 310
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=42.86 E-value=3e+02 Score=26.88 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=57.0
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeecC
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~~ 124 (269)
+.|.| .+..+..++++|.+.|+.+.-+.+ + .....+++.+++..++.+
T Consensus 303 v~v~g--~~~~~~~l~~~L~elG~~~~~v~~-----------------~---~~~~~~~~~l~~~~~~~~---------- 350 (429)
T cd03466 303 AAIYG--EPDFVVAITRFVLENGMVPVLIAT-----------------G---SESKKLKEKLEEDLKEYV---------- 350 (429)
T ss_pred EEEEc--CHHHHHHHHHHHHHCCCEEEEEEe-----------------C---CCChHHHHHHHHHHHhcC----------
Confidence 34556 378999999999988865432221 1 123445555554433321
Q ss_pred CCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 125 ~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
..+.+...++..-++++++. . +.-.+|++. ....+|++.|||+..+.
T Consensus 351 ----~~~~v~~~~d~~e~~~~l~~---~----~~dliiG~s------~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 351 ----EKCVILDGADFFDIESYAKE---L----KIDVLIGNS------YGRRIAEKLGIPLIRIG 397 (429)
T ss_pred ----CceEEEeCCCHHHHHHHHHh---c----CCCEEEECc------hhHHHHHHcCCCEEEec
Confidence 23444445556777777763 2 233467765 25789999999998764
No 311
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=42.74 E-value=12 Score=31.17 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=39.5
Q ss_pred eEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeE----EeCCCCCchHHHHHHHhcc
Q 024345 130 KVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH----YLCAKENEREEELLELVQN 204 (269)
Q Consensus 130 riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~----~~~~~~~~~e~~l~~~l~~ 204 (269)
||+|+|+|.+ +.+-..+.. +| ++|.+--.+ ...+.++-+.+..+.+ .++... ....++-+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g---~~V~l~~~~-----~~~~~~i~~~~~n~~~~~~~~l~~~i-~~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NG---HEVTLWGRD-----EEQIEEINETRQNPKYLPGIKLPENI-KATTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CT---EEEEEETSC-----HHHHHHHHHHTSETTTSTTSBEETTE-EEESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHH--cC---CEEEEEecc-----HHHHHHHHHhCCCCCCCCCcccCccc-ccccCHHHHhCc
Confidence 7999999995 666665553 34 455433222 1334455555543322 111110 011234456678
Q ss_pred CCEEEEEecceeee
Q 024345 205 TDFLVLARYMQVNR 218 (269)
Q Consensus 205 ~Dlivla~y~~il~ 218 (269)
+|+|+++-=.+-++
T Consensus 70 ad~IiiavPs~~~~ 83 (157)
T PF01210_consen 70 ADIIIIAVPSQAHR 83 (157)
T ss_dssp -SEEEE-S-GGGHH
T ss_pred ccEEEecccHHHHH
Confidence 99999986666555
No 312
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=42.62 E-value=1.1e+02 Score=23.08 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEe
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 162 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vi 162 (269)
-+|.-...+|.++++.=|+...++ . +|-+.+.|+...++.+++.++.|.-++.|.-+-
T Consensus 18 gFR~~v~~~A~~~gl~G~V~N~~d--g--~V~i~~~G~~~~l~~f~~~l~~g~p~a~V~~i~ 75 (91)
T PF00708_consen 18 GFRPFVKRIARKLGLTGWVRNLPD--G--SVEIEAEGEEEQLEEFIKWLKKGPPPARVDEIE 75 (91)
T ss_dssp SHHHHHHHHHHHTT-EEEEEE-TT--S--EEEEEEEEEHHHHHHHHHHHHHSSTTSEEEEEE
T ss_pred ChhHHHHHHHHHhCCceEEEECCC--C--EEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 478888899999998776543332 2 788888888888999999998886556665553
No 313
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.42 E-value=1.4e+02 Score=22.45 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=40.9
Q ss_pred CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345 50 PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (269)
Q Consensus 50 ~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~ 116 (269)
+-..|-.+++-++|.++|++++.+-+.++ .+.+.++-. .++.+.+++-+.++.++++..
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PSGID------~~Siii~~~--~~~~~~~~~i~~~i~~~~~pD 70 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPSGID------DISIIIRDN--QLTDEKEQKILAEIKEELHPD 70 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecCCCc------cEEEEEEcc--ccchhhHHHHHHHHHHhcCCC
Confidence 45679999999999999999999977544 334555522 333345666677777777643
No 314
>PRK07714 hypothetical protein; Provisional
Probab=42.06 E-value=41 Score=26.17 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=29.4
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
+++|...+++++ +.|+ +.++.+-+|-++.-..++..+|+.++||++.+.
T Consensus 19 ~v~G~~~v~~al----~~g~--~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~ 67 (100)
T PRK07714 19 VISGEELVLKEV----RSGK--AKLVLLSEDASVNTTKKITDKCTYYNVPMRKVE 67 (100)
T ss_pred eeecHHHHHHHH----HhCC--ceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 455655555443 3464 455555554421112468888999999999764
No 315
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=41.96 E-value=82 Score=27.20 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHhhhcCCCCceEEEEeeCCC----CCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-c-----CCEEEE
Q 024345 141 CLVDFLYGWQEGKLPVEITCVISNHD----RGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-N-----TDFLVL 210 (269)
Q Consensus 141 ~l~~ll~~~~~g~l~~~i~~Visn~~----~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-~-----~Dlivl 210 (269)
.+.+-++.+++-- +.+=++++||.. +.....+..+++..|||+.....+....-+++++.+. + ++=+++
T Consensus 63 ~~~~~~~~l~~~~-~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiav 141 (168)
T PF09419_consen 63 EYAEWLNELKKQF-GKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVTSPSEIAV 141 (168)
T ss_pred HHHHHHHHHHHHC-CCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCCCchhEEE
Confidence 3444455544321 222367899962 1012457888999999988766332111235666664 3 655666
Q ss_pred Eecceeee
Q 024345 211 ARYMQVNR 218 (269)
Q Consensus 211 a~y~~il~ 218 (269)
.|= |+++
T Consensus 142 IGD-rl~T 148 (168)
T PF09419_consen 142 IGD-RLFT 148 (168)
T ss_pred Ecc-hHHH
Confidence 652 4444
No 316
>PRK13820 argininosuccinate synthase; Provisional
Probab=41.95 E-value=75 Score=31.18 Aligned_cols=58 Identities=16% Similarity=-0.000 Sum_probs=38.5
Q ss_pred CeeEEEEEeCCc--hHHHHHHHhhhcCCCCc-eEEEEeeCCCCC--CChhHHHHHHhCCCCeEEeCC
Q 024345 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPV-EITCVISNHDRG--PNSHVIRFLERHGIPYHYLCA 189 (269)
Q Consensus 128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~-~i~~Visn~~~~--~~~~v~~~a~~~gIP~~~~~~ 189 (269)
+.||++..||.- +.+-.++.. . ++. ++.++..|..-. .-..+.++|++.|||++.++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e--~--~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~ 64 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE--K--YGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDA 64 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH--h--cCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 469999999974 444444431 2 234 787776665210 112588999999999999874
No 317
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=41.82 E-value=1.5e+02 Score=22.46 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=36.0
Q ss_pred EEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--cCCEE
Q 024345 131 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFL 208 (269)
Q Consensus 131 iav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~~Dli 208 (269)
|.++|.|+ .-+.+++..+++. .+++.|=.++ ...+.+++.|+++++-+.. +.+.++... ++|.+
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~--~~vvvid~d~------~~~~~~~~~~~~~i~gd~~----~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGG--IDVVVIDRDP------ERVEELREEGVEVIYGDAT----DPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTT--SEEEEEESSH------HHHHHHHHTTSEEEES-TT----SHHHHHHTTGGCESEE
T ss_pred eEEEcCCH--HHHHHHHHHHhCC--CEEEEEECCc------HHHHHHHhcccccccccch----hhhHHhhcCccccCEE
Confidence 34555554 3344444444442 3455444433 3577888899998886532 234555444 78877
Q ss_pred EEE
Q 024345 209 VLA 211 (269)
Q Consensus 209 vla 211 (269)
+++
T Consensus 67 v~~ 69 (116)
T PF02254_consen 67 VIL 69 (116)
T ss_dssp EEE
T ss_pred EEc
Confidence 765
No 318
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=41.62 E-value=86 Score=31.05 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=50.1
Q ss_pred CCeeEEEEEeCCch--HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhcc
Q 024345 127 PKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (269)
Q Consensus 127 ~~~riav~~Sg~g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~ 204 (269)
..+|+.|+|-|.-. ....|.. .|- .+| .|.|+ .-..+.++|+++|.-+..+ +++.+.+.+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~---~g~--~~i--~IaNR---T~erA~~La~~~~~~~~~l--------~el~~~l~~ 238 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAE---KGV--KKI--TIANR---TLERAEELAKKLGAEAVAL--------EELLEALAE 238 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHh---CCC--CEE--EEEcC---CHHHHHHHHHHhCCeeecH--------HHHHHhhhh
Confidence 55789999988743 3344433 231 233 58888 4567899999999554443 256677779
Q ss_pred CCEEEEE--ecceeee
Q 024345 205 TDFLVLA--RYMQVNR 218 (269)
Q Consensus 205 ~Dlivla--~y~~il~ 218 (269)
+|+++++ +.-.|++
T Consensus 239 ~DvVissTsa~~~ii~ 254 (414)
T COG0373 239 ADVVISSTSAPHPIIT 254 (414)
T ss_pred CCEEEEecCCCccccC
Confidence 9999998 6666766
No 319
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.57 E-value=1.6e+02 Score=25.45 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHH
Q 024345 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176 (269)
Q Consensus 98 ~~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~ 176 (269)
-..++.+.+++.+++.|. .+.++.+... ......++...... +.++|.........+..+.
T Consensus 13 ~~~~~~~~i~~~a~~~g~--------------~~~~~~~~~~~~~~~~~i~~l~~~~----vdgii~~~~~~~~~~~~~~ 74 (269)
T cd06281 13 LLAQLFSGAEDRLRAAGY--------------SLLIANSLNDPERELEILRSFEQRR----MDGIIIAPGDERDPELVDA 74 (269)
T ss_pred cHHHHHHHHHHHHHHcCC--------------EEEEEeCCCChHHHHHHHHHHHHcC----CCEEEEecCCCCcHHHHHH
Confidence 357788888888888763 3444444432 33334444433332 3333322211122356778
Q ss_pred HHhCCCCeEEeC
Q 024345 177 LERHGIPYHYLC 188 (269)
Q Consensus 177 a~~~gIP~~~~~ 188 (269)
++++|||+..++
T Consensus 75 ~~~~~ipvV~i~ 86 (269)
T cd06281 75 LASLDLPIVLLD 86 (269)
T ss_pred HHhCCCCEEEEe
Confidence 888999999886
No 320
>PRK14423 acylphosphatase; Provisional
Probab=41.13 E-value=1.1e+02 Score=23.44 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=42.9
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|-....+|.++++.=|+...+ --+|-+.+.|+...++.+++.+++|...+.|.-+-.
T Consensus 19 GFR~~v~~~A~~lgl~G~V~N~~----dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (92)
T PRK14423 19 YYRASTRDTARELGVDGWVRNLD----DGRVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVEV 77 (92)
T ss_pred eehHHHHHHHHHcCCEEEEEECC----CCeEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 46778888999999987765332 245667788888899999999887754456665543
No 321
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=41.12 E-value=90 Score=28.80 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=31.3
Q ss_pred eeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeE
Q 024345 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (269)
Q Consensus 129 ~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~ 185 (269)
++|++.|.|. |..+- +..++|..++++++|.-.+ ..++.+++...+.++.
T Consensus 1 l~vgiVGcGaIG~~l~---e~v~~~~~~~e~v~v~D~~----~ek~~~~~~~~~~~~~ 51 (255)
T COG1712 1 LKVGIVGCGAIGKFLL---ELVRDGRVDFELVAVYDRD----EEKAKELEASVGRRCV 51 (255)
T ss_pred CeEEEEeccHHHHHHH---HHHhcCCcceeEEEEecCC----HHHHHHHHhhcCCCcc
Confidence 4788999887 34443 4444676678877654433 3456666677776544
No 322
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=41.11 E-value=57 Score=24.94 Aligned_cols=41 Identities=15% Similarity=0.356 Sum_probs=22.4
Q ss_pred HHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--cCCEEEEEec
Q 024345 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARY 213 (269)
Q Consensus 173 v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~~Dlivla~y 213 (269)
+.+++.+.|+++........+..+++.+..+ ++|+||+..-
T Consensus 61 ~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~ 103 (132)
T cd01988 61 AERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWH 103 (132)
T ss_pred HHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecC
Confidence 4555666777766543111122345666555 6777777544
No 323
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=40.57 E-value=2.3e+02 Score=27.55 Aligned_cols=89 Identities=9% Similarity=0.153 Sum_probs=52.9
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhh-cCCCCceEEEEeeCCCCCC-----------ChhHHHHHHhCCCCeEEeCCCCCch
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLCAKENER 194 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~-~g~l~~~i~~Visn~~~~~-----------~~~v~~~a~~~gIP~~~~~~~~~~~ 194 (269)
...|+.++|+|+. .+.+++.++ ++..+.++++++.+.++.. ...+.+.+++++|....+.....+.
T Consensus 124 ~~~rvLIvGag~~--a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~ 201 (445)
T TIGR03025 124 NLRRVLIVGTGEA--ARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEE 201 (445)
T ss_pred CCCcEEEEECCHH--HHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccH
Confidence 4468999988863 334444443 3345688999887653211 0235678888999877776322221
Q ss_pred H--HHHHHHhc--cCCEEEEEecceee
Q 024345 195 E--EELLELVQ--NTDFLVLARYMQVN 217 (269)
Q Consensus 195 e--~~l~~~l~--~~Dlivla~y~~il 217 (269)
+ .++++.++ +.++.++-....+.
T Consensus 202 ~~~~~ll~~~~~~gv~V~~vP~~~e~~ 228 (445)
T TIGR03025 202 ARILELLLQLRDLGVDVRLVPDLFEFL 228 (445)
T ss_pred HHHHHHHHHHHhcCCEEEEeCchhhhc
Confidence 2 34555555 66777776665544
No 324
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=40.48 E-value=2.1e+02 Score=28.30 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=52.9
Q ss_pred CCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CC-hhHHHHHHhCCCCeEEeCCCCCch--H
Q 024345 127 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PN-SHVIRFLERHGIPYHYLCAKENER--E 195 (269)
Q Consensus 127 ~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~-~~v~~~a~~~gIP~~~~~~~~~~~--e 195 (269)
...|+.++|+|+. ..+..-+. +++....++++++.+.+.. .+ ..+.+++++++|....+.....+. -
T Consensus 142 ~~rrVLIvGaG~~g~~l~~~L~--~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l 219 (463)
T PRK10124 142 NKRMVAVAGDLPAGQMLLESFR--NEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARV 219 (463)
T ss_pred CCCcEEEEECCHHHHHHHHHHh--cCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHH
Confidence 3468999998874 33322222 2344568899988764320 01 236678899999988776322221 1
Q ss_pred HHHHHHhc--cCCEEEEEecceee
Q 024345 196 EELLELVQ--NTDFLVLARYMQVN 217 (269)
Q Consensus 196 ~~l~~~l~--~~Dlivla~y~~il 217 (269)
+++++.++ .+++.++-++....
T Consensus 220 ~ell~~~~~~~v~V~ivP~l~~~~ 243 (463)
T PRK10124 220 KKLVRQLADTTCSVLLIPDVFTFN 243 (463)
T ss_pred HHHHHHHHHcCCeEEEecchhhcc
Confidence 45565555 67777777665443
No 325
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=40.37 E-value=2.6e+02 Score=24.67 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=69.3
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeec
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~ 123 (269)
++-|+=.+.+.-..++++.|.+.|+.+.|++... |+ . .+.++.+.+++.-
T Consensus 10 iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t---------------~~----a---~~~I~~l~~~~p~-------- 59 (196)
T PF01081_consen 10 IIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRT---------------PN----A---LEAIEALRKEFPD-------- 59 (196)
T ss_dssp EEEEETTSSGGGHHHHHHHHHHTT--EEEEETTS---------------TT----H---HHHHHHHHHHHTT--------
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCC---------------cc----H---HHHHHHHHHHCCC--------
Confidence 4555666667788999999999998877776521 21 1 2334444444421
Q ss_pred CCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 124 ~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
..+|-|+-.+.++.-++++.|- ..++|-. -+..+.++|+++|||+.--.. .-.|+.+.++
T Consensus 60 --------~~vGAGTV~~~e~a~~a~~aGA-----~FivSP~---~~~~v~~~~~~~~i~~iPG~~----TptEi~~A~~ 119 (196)
T PF01081_consen 60 --------LLVGAGTVLTAEQAEAAIAAGA-----QFIVSPG---FDPEVIEYAREYGIPYIPGVM----TPTEIMQALE 119 (196)
T ss_dssp --------SEEEEES--SHHHHHHHHHHT------SEEEESS-----HHHHHHHHHHTSEEEEEES----SHHHHHHHHH
T ss_pred --------CeeEEEeccCHHHHHHHHHcCC-----CEEECCC---CCHHHHHHHHHcCCcccCCcC----CHHHHHHHHH
Confidence 1256676667777666666772 2456644 456799999999999985321 1246777777
Q ss_pred -cCCEEEE
Q 024345 204 -NTDFLVL 210 (269)
Q Consensus 204 -~~Dlivl 210 (269)
++|++=+
T Consensus 120 ~G~~~vK~ 127 (196)
T PF01081_consen 120 AGADIVKL 127 (196)
T ss_dssp TT-SEEEE
T ss_pred CCCCEEEE
Confidence 7776533
No 326
>PRK07680 late competence protein ComER; Validated
Probab=39.82 E-value=92 Score=28.13 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=23.9
Q ss_pred eeEEEEEeCC-chHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhC-CCC
Q 024345 129 YKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIP 183 (269)
Q Consensus 129 ~riav~~Sg~-g~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~-gIP 183 (269)
|||+|+|.|. |..+ ..|++ .|.+..+-+ .++++. ......+++++ |+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~---~g~~~~~~v-~v~~r~---~~~~~~~~~~~~g~~ 51 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLE---SGAVKPSQL-TITNRT---PAKAYHIKERYPGIH 51 (273)
T ss_pred CEEEEECccHHHHHHHHHHHH---CCCCCcceE-EEECCC---HHHHHHHHHHcCCeE
Confidence 4799999887 4433 34433 342222112 344542 23345555555 554
No 327
>PRK10206 putative oxidoreductase; Provisional
Probab=39.74 E-value=88 Score=29.50 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=36.4
Q ss_pred CeeEEEEEeCCch--H-HHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345 128 KYKVAVLASKQEH--C-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (269)
Q Consensus 128 ~~riav~~Sg~g~--~-l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~- 203 (269)
+.||+++|.|... . +..++.. .+ ..++++|.... ++ ..++++++++.-.+ + + +.++++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~--~~--~~~l~av~d~~---~~--~~~~~~~~~~~~~~-~----~----~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR--KD--SWHVAHIFRRH---AK--PEEQAPIYSHIHFT-S----D----LDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC--CC--CEEEEEEEcCC---hh--HHHHHHhcCCCccc-C----C----HHHHhcC
Confidence 4699999999731 1 2222221 11 36888776644 22 23677788643222 1 1 223444
Q ss_pred -cCCEEEEEe
Q 024345 204 -NTDFLVLAR 212 (269)
Q Consensus 204 -~~Dlivla~ 212 (269)
++|+++.+.
T Consensus 63 ~~iD~V~I~t 72 (344)
T PRK10206 63 PDVKLVVVCT 72 (344)
T ss_pred CCCCEEEEeC
Confidence 678877764
No 328
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=39.48 E-value=1.4e+02 Score=28.10 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=32.1
Q ss_pred hHHHHHHHhhhcCCCCceEEEEeeCCCC----CCChhHHHHHHhCCCCeEEeC
Q 024345 140 HCLVDFLYGWQEGKLPVEITCVISNHDR----GPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 140 ~~l~~ll~~~~~g~l~~~i~~Visn~~~----~~~~~v~~~a~~~gIP~~~~~ 188 (269)
.....|+..++.| +-+++||+--. -|.....+.|.++||+|..+|
T Consensus 65 ~~~~~li~~l~~g----~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lP 113 (275)
T COG0313 65 EKLPKLIPLLKKG----KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLP 113 (275)
T ss_pred HHHHHHHHHHhcC----CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecC
Confidence 4555666666666 35567776321 156789999999999999988
No 329
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=39.31 E-value=39 Score=25.94 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=38.2
Q ss_pred cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeE-EEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF-YSRSEFIFDPIKWPREQMDEDFFKL 109 (269)
Q Consensus 40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F-~m~~~v~~p~~~~~~~~L~e~L~~l 109 (269)
.....+.|.=|+|||-..+..+.+..+. ||.+.+-... ++.+ .+-+-+.+++ ..+.++|.+.|++.
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~--~~~~a~vlvgi~v~~-~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYS--GDDFARVLVGIEVPD-AEDLEELIERLKAL 74 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-T--TTSCSEEEEEEE-SS-THHHHHHHHHHTSS
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCC--CCCeeeEEEEEEeCC-HHHHHHHHHHHHHc
Confidence 4678899999999999999999996554 5888877533 1222 2334455664 22235555555544
No 330
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.18 E-value=1.4e+02 Score=26.91 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=39.0
Q ss_pred CeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCC
Q 024345 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~D 206 (269)
||+++++|.|+ |.-|-..+.. .| ++| +|.++. .+......++..+.-+.-. + ..+..+.+|
T Consensus 1 m~~~~i~GtGniG~alA~~~a~--ag---~eV--~igs~r--~~~~~~a~a~~l~~~i~~~-----~----~~dA~~~aD 62 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK--AG---HEV--IIGSSR--GPKALAAAAAALGPLITGG-----S----NEDAAALAD 62 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHh--CC---CeE--EEecCC--ChhHHHHHHHhhccccccC-----C----hHHHHhcCC
Confidence 58999999999 6666443332 33 555 455442 2233455556666442211 1 123334689
Q ss_pred EEEEE-ecceeee
Q 024345 207 FLVLA-RYMQVNR 218 (269)
Q Consensus 207 livla-~y~~il~ 218 (269)
++++| -|-.+..
T Consensus 63 VVvLAVP~~a~~~ 75 (211)
T COG2085 63 VVVLAVPFEAIPD 75 (211)
T ss_pred EEEEeccHHHHHh
Confidence 88876 3444433
No 331
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=39.01 E-value=1.7e+02 Score=27.16 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=23.8
Q ss_pred eEEEEeeCCCCCC-ChhHHHHHHhCCCCeEEeCC
Q 024345 157 EITCVISNHDRGP-NSHVIRFLERHGIPYHYLCA 189 (269)
Q Consensus 157 ~i~~Visn~~~~~-~~~v~~~a~~~gIP~~~~~~ 189 (269)
+.+.+||-++..| +..+++.....|||+.++..
T Consensus 62 Df~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D 95 (277)
T PRK00994 62 DFVIVISPNPAAPGPKKAREILKAAGIPCIVIGD 95 (277)
T ss_pred CEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcC
Confidence 4666777664433 24588889999999999873
No 332
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=39.01 E-value=1.2e+02 Score=27.58 Aligned_cols=72 Identities=10% Similarity=0.200 Sum_probs=35.3
Q ss_pred CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCchHHHHHHHhc--c
Q 024345 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENEREEELLELVQ--N 204 (269)
Q Consensus 128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~~e~~l~~~l~--~ 204 (269)
|+||.|.+.+.+. .+++.+++-.-.+++. +++.. +.++....|.+ ++.++.. +..+-+.+.++++ +
T Consensus 1 ~~~vLv~g~~~~~---~~~~~l~~~~~g~~vi--~~d~~--~~~~~~~~~d~----~~~~p~~~~~~~~~~l~~~~~~~~ 69 (326)
T PRK12767 1 MMNILVTSAGRRV---QLVKALKKSLLKGRVI--GADIS--ELAPALYFADK----FYVVPKVTDPNYIDRLLDICKKEK 69 (326)
T ss_pred CceEEEecCCccH---HHHHHHHHhccCCEEE--EECCC--CcchhhHhccC----cEecCCCCChhHHHHHHHHHHHhC
Confidence 5799999998775 3333333221024443 44332 34555555442 2233311 1112245566665 7
Q ss_pred CCEEEE
Q 024345 205 TDFLVL 210 (269)
Q Consensus 205 ~Dlivl 210 (269)
+|+++.
T Consensus 70 id~ii~ 75 (326)
T PRK12767 70 IDLLIP 75 (326)
T ss_pred CCEEEE
Confidence 887765
No 333
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.96 E-value=61 Score=30.90 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=46.1
Q ss_pred CeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCC
Q 024345 128 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (269)
Q Consensus 128 ~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~D 206 (269)
++||.|.|+.-| .-|.++... --..+.++++..- ...-.++|.++|||.+.-. | ++-..+|
T Consensus 4 pksVvV~GtrFGq~Ylaaf~~~----~~~~eLaGiLaqG----SeRSRaLAh~~GVply~~~------e----elpd~id 65 (361)
T COG4693 4 PKSVVVCGTRFGQFYLAAFAAA----PPRFELAGILAQG----SERSRALAHRLGVPLYCEV------E----ELPDDID 65 (361)
T ss_pred CceEEEecchHHHHHHHHhccC----CCCceeehhhhcc----cHHHHHHHHHhCCccccCH------h----hCCCCCC
Confidence 459999999988 444444322 1136888888764 3346899999999988632 1 1112577
Q ss_pred EEEEEecceeee
Q 024345 207 FLVLARYMQVNR 218 (269)
Q Consensus 207 livla~y~~il~ 218 (269)
+-+++-=.-|.+
T Consensus 66 iACVvVrsai~G 77 (361)
T COG4693 66 IACVVVRSAIVG 77 (361)
T ss_pred eEEEEEeeeeec
Confidence 766654455554
No 334
>PLN02712 arogenate dehydrogenase
Probab=38.78 E-value=1e+02 Score=32.32 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCCCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCe
Q 024345 125 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (269)
Q Consensus 125 ~~~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~ 184 (269)
..+++||+|+|.|. |..+-.-+.. .| .+|.+ .++.+ ..+.|++.|+..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~--~G---~~V~~--~dr~~-----~~~~A~~~Gv~~ 97 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLIS--QG---HTVLA--HSRSD-----HSLAARSLGVSF 97 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHH--CC---CEEEE--EeCCH-----HHHHHHHcCCEE
Confidence 45678999999987 4444333332 34 45533 33311 235677888644
No 335
>PRK06141 ornithine cyclodeaminase; Validated
Probab=38.48 E-value=1.4e+02 Score=27.85 Aligned_cols=92 Identities=8% Similarity=0.019 Sum_probs=49.2
Q ss_pred CHHHHHHH-HHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHH
Q 024345 98 PREQMDED-FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI 174 (269)
Q Consensus 98 ~~~~L~e~-L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~ 174 (269)
....+|.+ ...++.++ +- ....+||+|+|+|.- ..+..++.. .+ ..+| .|.|+ ......
T Consensus 103 ~lT~~RTaa~sala~~~-La--------~~~~~~v~iiG~G~~a~~~~~al~~~--~~--~~~V--~V~~R---s~~~a~ 164 (314)
T PRK06141 103 ELTARRTAAASALAASY-LA--------RKDASRLLVVGTGRLASLLALAHASV--RP--IKQV--RVWGR---DPAKAE 164 (314)
T ss_pred chhcchhHHHHHHHHHH-hC--------CCCCceEEEECCcHHHHHHHHHHHhc--CC--CCEE--EEEcC---CHHHHH
Confidence 35666663 44444444 21 124568999999983 333444331 12 1233 35566 234566
Q ss_pred HHHHhC---CCCeEEeCCCCCchHHHHHHHhccCCEEEEEecce
Q 024345 175 RFLERH---GIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ 215 (269)
Q Consensus 175 ~~a~~~---gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y~~ 215 (269)
++|++. |+++.... +..+.++++|+|+++.=..
T Consensus 165 ~~a~~~~~~g~~~~~~~--------~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 165 ALAAELRAQGFDAEVVT--------DLEAAVRQADIISCATLST 200 (314)
T ss_pred HHHHHHHhcCCceEEeC--------CHHHHHhcCCEEEEeeCCC
Confidence 666653 55555432 1223445899998876544
No 336
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=38.41 E-value=91 Score=27.85 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=24.2
Q ss_pred eeEEEEEeCC-c-hHHHHHHHhhhcCCCCceEE-EEeeCCCCCCChhHHHHHHhC
Q 024345 129 YKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEIT-CVISNHDRGPNSHVIRFLERH 180 (269)
Q Consensus 129 ~riav~~Sg~-g-~~l~~ll~~~~~g~l~~~i~-~Visn~~~~~~~~v~~~a~~~ 180 (269)
|||+|+|.|. | .-.+.|+. .|. ++. ..++++ ......++++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~---~g~---~~~~i~v~~r---~~~~~~~l~~~~ 46 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLT---SPA---DVSEIIVSPR---NAQIAARLAERF 46 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHh---CCC---ChheEEEECC---CHHHHHHHHHHc
Confidence 4899999997 3 34455443 331 222 245665 234456666666
No 337
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=38.38 E-value=47 Score=32.72 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=42.7
Q ss_pred eeEEEEEeCCch---HHHHHHHhhhcC-CCC-ceEEEEeeCCCCCCC--hhHHHHHHhCCCCeEEeCCCCCchHHHHHHH
Q 024345 129 YKVAVLASKQEH---CLVDFLYGWQEG-KLP-VEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (269)
Q Consensus 129 ~riav~~Sg~g~---~l~~ll~~~~~g-~l~-~~i~~Visn~~~~~~--~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~ 201 (269)
+||+|+|.|+.. -+++|+. .. .|+ .+|+++=.+++++.. .-+.++++++|.++...-.. + ..+.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~---~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~tt--D----~~~A 71 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLK---TPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTM--D----LEDA 71 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHc---ChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeC--C----HHHH
Confidence 599999999852 3344443 34 355 466554433322111 23566778888876553221 2 3356
Q ss_pred hccCCEEEEE
Q 024345 202 VQNTDFLVLA 211 (269)
Q Consensus 202 l~~~Dlivla 211 (269)
++++|+|+..
T Consensus 72 l~gADfVi~~ 81 (425)
T cd05197 72 IIDADFVINQ 81 (425)
T ss_pred hCCCCEEEEe
Confidence 6789998874
No 338
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=38.37 E-value=46 Score=32.97 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=42.6
Q ss_pred eeEEEEEeCCchH---HHHHHHhhhcCCCC-ceEEEEeeCCCCCCC--hhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345 129 YKVAVLASKQEHC---LVDFLYGWQEGKLP-VEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (269)
Q Consensus 129 ~riav~~Sg~g~~---l~~ll~~~~~g~l~-~~i~~Visn~~~~~~--~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l 202 (269)
|||+|+|.|+... +++|+.. ...|+ .+|+++=.+..++.- .-+.++++++|.++.+.-.. +..+.+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~--~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Tt------dr~eAl 72 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDR--KEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTT------DPEEAF 72 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC--cccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEEC------CHHHHh
Confidence 6999999998622 3333332 12455 566655444322111 22556677788886654321 233566
Q ss_pred ccCCEEEEE
Q 024345 203 QNTDFLVLA 211 (269)
Q Consensus 203 ~~~Dlivla 211 (269)
+++|+|+..
T Consensus 73 ~gADfVi~~ 81 (437)
T cd05298 73 TDADFVFAQ 81 (437)
T ss_pred CCCCEEEEE
Confidence 799998874
No 339
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=38.31 E-value=1.1e+02 Score=27.61 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=39.5
Q ss_pred hhHHHHHHhCCCCeEEeCCCCCchH-HHHHHHhc-cCCEEEEEecceeee---------cccccccccccCCCccccCC
Q 024345 171 SHVIRFLERHGIPYHYLCAKENERE-EELLELVQ-NTDFLVLARYMQVNR---------IRLYVAQLFSCLVTEQLTVL 238 (269)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~~~~~~~e-~~l~~~l~-~~Dlivla~y~~il~---------l~~~~~~~iN~~~~~iHpSL 238 (269)
......|.++|+|+..-+...+..+ +++.+ .. +.-+++...|..-.. ...+. . .++=+.|.|+--
T Consensus 74 ~~~~~~al~~G~~vvigttG~s~~~~~~l~~-aa~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~-~-~d~ei~E~HH~~ 149 (257)
T PRK00048 74 LENLEFALEHGKPLVIGTTGFTEEQLAELEE-AAKKIPVVIAPNFSIGVNLLMKLAEKAAKYLG-D-YDIEIIEAHHRH 149 (257)
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-HhcCCCEEEECcchHHHHHHHHHHHHHHHhcC-C-CCEEEEEccCCC
Confidence 4678889999999997543222222 22333 33 778888887754333 22232 1 566777888874
No 340
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=38.16 E-value=1.9e+02 Score=24.95 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=41.5
Q ss_pred EEEEEe-CC-c-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCCE
Q 024345 131 VAVLAS-KQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (269)
Q Consensus 131 iav~~S-g~-g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dl 207 (269)
|+|+|. |. | +.++.|+. . .++|.+++-+. +....+..+..|+-+...+. ..++.+.+.++++|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~----~--~~~V~~l~R~~----~~~~~~~l~~~g~~vv~~d~---~~~~~l~~al~g~d~ 67 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS----A--GFSVRALVRDP----SSDRAQQLQALGAEVVEADY---DDPESLVAALKGVDA 67 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH----T--TGCEEEEESSS----HHHHHHHHHHTTTEEEES-T---T-HHHHHHHHTTCSE
T ss_pred CEEECCccHHHHHHHHHHHh----C--CCCcEEEEecc----chhhhhhhhcccceEeeccc---CCHHHHHHHHcCCce
Confidence 455553 33 3 45555555 2 25666444432 34455566778887766542 235678888999999
Q ss_pred EEEEec
Q 024345 208 LVLARY 213 (269)
Q Consensus 208 ivla~y 213 (269)
++++--
T Consensus 68 v~~~~~ 73 (233)
T PF05368_consen 68 VFSVTP 73 (233)
T ss_dssp EEEESS
T ss_pred EEeecC
Confidence 888766
No 341
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=38.11 E-value=2.5e+02 Score=25.33 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=59.7
Q ss_pred EEeCCCCCCHHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc---hHHHHHHHhhhcC--CCCceEEEEeeC
Q 024345 90 FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEG--KLPVEITCVISN 164 (269)
Q Consensus 90 v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g---~~l~~ll~~~~~g--~l~~~i~~Visn 164 (269)
+.+|- .-+.+.+..+.++.++.+-.. ...-.+|+++.+|.. +....+++.+++. ....+|+--|
T Consensus 63 l~fpm-~~~~~~~~~~~~~~~~~i~~~--------~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGI-- 131 (238)
T PRK05948 63 LYFPY-VQDEEQLEQAWQAAADQVWHY--------LEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGV-- 131 (238)
T ss_pred ecCCc-cCChHHHHHHHHHHHHHHHHH--------HHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECCh--
Confidence 34552 345566666666665554211 112268999999995 5556666655542 2334443112
Q ss_pred CCCCCChhHHHHHHhCCCCeEEeCCC-----CCchHHHHHHHhccCCEEEEEecce
Q 024345 165 HDRGPNSHVIRFLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQ 215 (269)
Q Consensus 165 ~~~~~~~~v~~~a~~~gIP~~~~~~~-----~~~~e~~l~~~l~~~Dlivla~y~~ 215 (269)
+.+...|.+.|+|...-+.. .....+++.+.+...|.+|+..=.+
T Consensus 132 ------ss~~a~aa~~g~pL~~~~e~l~ii~~~~~~~~l~~~l~~~~~vVlmk~~~ 181 (238)
T PRK05948 132 ------CSPLAAAAALGIPLTLGSQRLAILPALYHLEELEQALTWADVVVLMKVSS 181 (238)
T ss_pred ------hHHHHHHHHhCCCeecCCCeEEEEcCCCCHHHHHHHHhCCCEEEEEECCc
Confidence 34677888999998742211 0112234445555678877765433
No 342
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=38.09 E-value=40 Score=27.35 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhC-CCCeEEeCCCCCchHHHHHHHhc
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~-gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
..+|+.|+|+|.- .....|.+ .|- .+| .|+|| ....+.++++.+ +..+..++. + ++.+.++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~---~g~--~~i--~i~nR---t~~ra~~l~~~~~~~~~~~~~~-----~-~~~~~~~ 74 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA---LGA--KEI--TIVNR---TPERAEALAEEFGGVNIEAIPL-----E-DLEEALQ 74 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH---TTS--SEE--EEEES---SHHHHHHHHHHHTGCSEEEEEG-----G-GHCHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH---cCC--CEE--EEEEC---CHHHHHHHHHHcCccccceeeH-----H-HHHHHHh
Confidence 4579999999862 33344433 341 224 46777 345677888877 223333221 1 2334555
Q ss_pred cCCEEEEEec
Q 024345 204 NTDFLVLARY 213 (269)
Q Consensus 204 ~~Dlivla~y 213 (269)
++|+||.+--
T Consensus 75 ~~DivI~aT~ 84 (135)
T PF01488_consen 75 EADIVINATP 84 (135)
T ss_dssp TESEEEE-SS
T ss_pred hCCeEEEecC
Confidence 8999998843
No 343
>PRK11890 phosphate acetyltransferase; Provisional
Probab=37.99 E-value=2.1e+02 Score=27.27 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCC---eEEeCCCCC-chHHHHHHH
Q 024345 126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP---YHYLCAKEN-EREEELLEL 201 (269)
Q Consensus 126 ~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP---~~~~~~~~~-~~e~~l~~~ 201 (269)
.+++|++|.+-.+.+.|++..+..++|- ++.++ +.++ ..+.++|+++|+- +..++..+. +.-++...+
T Consensus 20 ~~~~~vava~a~D~~vl~Aa~~a~~~gl--~~piL-vG~~-----~~I~~~a~~~g~dl~~~eII~~~~~~~~a~~av~m 91 (312)
T PRK11890 20 LPPLPTAVAHPCDESSLRGAVEAAQLGL--ITPIL-VGPR-----ARIEAVAAECGLDLSGYEIVDAPHSHAAAAKAVEL 91 (312)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHcCC--EEEEE-ECCH-----HHHHHHHHHcCCCcCCCEEECCCChHHHHHHHHHH
Confidence 3567999999988899999988888884 44433 4544 3589999999875 444443221 111233445
Q ss_pred hc--cCCEEEE
Q 024345 202 VQ--NTDFLVL 210 (269)
Q Consensus 202 l~--~~Dlivl 210 (269)
++ ++|.++.
T Consensus 92 V~~G~AD~lmk 102 (312)
T PRK11890 92 VREGEAEALMK 102 (312)
T ss_pred HHcCCCCEEec
Confidence 55 7997665
No 344
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=37.93 E-value=1.2e+02 Score=28.47 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=39.9
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHh----CCCCeEEeCCCCCchHHHHHH
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLE 200 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~e~~l~~ 200 (269)
...+++++|+|.- ..+..+... .+ .+-+ .|.|+. .....++|++ +|+++...+ ++.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~--~~---i~~v-~V~~R~---~~~a~~~a~~~~~~~g~~v~~~~--------~~~~ 190 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLV--RD---IRSA-RIWARD---SAKAEALALQLSSLLGIDVTAAT--------DPRA 190 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHh--CC---ccEE-EEECCC---HHHHHHHHHHHHhhcCceEEEeC--------CHHH
Confidence 3469999999973 445555431 12 2222 355662 3445555554 377665432 1223
Q ss_pred HhccCCEEEEEecc
Q 024345 201 LVQNTDFLVLARYM 214 (269)
Q Consensus 201 ~l~~~Dlivla~y~ 214 (269)
.++++|+||.+--.
T Consensus 191 av~~aDiVvtaT~s 204 (326)
T TIGR02992 191 AMSGADIIVTTTPS 204 (326)
T ss_pred HhccCCEEEEecCC
Confidence 44589999998643
No 345
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=37.76 E-value=1.6e+02 Score=28.15 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=34.0
Q ss_pred CCchHHHHHHHhhhcCCCCceEEEEee-CCCCCCChhH-HHHHHhCCCCeEEeCCCCCchHHHHHHHhc--cCCEEEE
Q 024345 137 KQEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHV-IRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 210 (269)
Q Consensus 137 g~g~~l~~ll~~~~~g~l~~~i~~Vis-n~~~~~~~~v-~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~~Dlivl 210 (269)
+.|+-+.-|..+.++|. .+. .+++ .+|....... .....+.|||+.+++.. .+.-.++ ++|.+++
T Consensus 163 ~~gtal~~l~~A~~~g~-~~~--V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds------av~~~m~~~~vd~Viv 231 (331)
T TIGR00512 163 GYGTALGVIRSAHEKGR-LEH--VYADETRPRLQGARLTAWELVQEGIPATLITDS------MAAHLMKHGEVDAVIV 231 (331)
T ss_pred ccchHHHHHHHHHHcCC-ceE--EEECCCCchhhHHHHHHHHHHHCCCCEEEEccc------HHHHHhcccCCCEEEE
Confidence 34555655555555664 233 3333 3432222322 34567889999998732 2333444 5666665
No 346
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=37.53 E-value=2.1e+02 Score=26.94 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=28.5
Q ss_pred EEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 133 v~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
||.-+. +..+..|..+.++|. +++|. |.=.+|............+.|||+.+++
T Consensus 124 ILT~~~S~tv~~~l~~A~~~~k-~~~V~-v~EsrP~~~G~~~a~~L~~~GI~vtlI~ 178 (310)
T PRK08535 124 IMTHCNSSAALSVIKTAHEQGK-DIEVI-ATETRPRNQGHITAKELAEYGIPVTLIV 178 (310)
T ss_pred EEEeCCcHHHHHHHHHHHHCCC-eEEEE-EecCCchhhHHHHHHHHHHCCCCEEEEe
Confidence 444444 455555555555664 34443 2222322222234455678899999987
No 347
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=37.50 E-value=1.1e+02 Score=28.42 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=44.4
Q ss_pred eeEEEEEeCCchHHHHHHHhh----hcCCCCceEEEEeeCCCCCCCh--hHHHHHHhCCCCeEEeCC-CCCc-hHHHHHH
Q 024345 129 YKVAVLASKQEHCLVDFLYGW----QEGKLPVEITCVISNHDRGPNS--HVIRFLERHGIPYHYLCA-KENE-REEELLE 200 (269)
Q Consensus 129 ~riav~~Sg~g~~l~~ll~~~----~~g~l~~~i~~Visn~~~~~~~--~v~~~a~~~gIP~~~~~~-~~~~-~e~~l~~ 200 (269)
..|++ .++....+..++..+ +.| .+|...-..+ +.. +..++++++|+.+..++. .... .-+++.+
T Consensus 62 ~~v~~-~~~~t~a~~~~~~~l~~~~~~g---~~vl~~~~~~---~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~ 134 (371)
T PF00266_consen 62 EEVVF-TSNGTEALNAVASSLLNPLKPG---DEVLVTSNEH---PSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEE 134 (371)
T ss_dssp EEEEE-ESSHHHHHHHHHHHHHHHGTTT---CEEEEEESSH---HHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHH
T ss_pred ccccc-ccccchhhhhhhhccccccccc---cccccccccc---cccccccccccccchhhhccccccccchhhhhhhhh
Confidence 56654 444444666666665 333 2444333333 222 367778899999988873 2211 2245666
Q ss_pred Hhc-cCCEEEEEec
Q 024345 201 LVQ-NTDFLVLARY 213 (269)
Q Consensus 201 ~l~-~~Dlivla~y 213 (269)
.+. +++++++..-
T Consensus 135 ~l~~~~~lv~~~~~ 148 (371)
T PF00266_consen 135 ALNPDTRLVSISHV 148 (371)
T ss_dssp HHHTTESEEEEESB
T ss_pred hhccccceEEeecc
Confidence 666 7888876543
No 348
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=37.45 E-value=43 Score=25.26 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 173 v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
+..+|++++||++.++. -+++-+++-
T Consensus 50 l~~~c~~~~Ip~~~~~s-----~~eLG~~~g 75 (95)
T PF01248_consen 50 LPALCEEKNIPYVFVPS-----KEELGRACG 75 (95)
T ss_dssp HHHHHHHTTEEEEEESH-----HHHHHHHTT
T ss_pred chhheeccceeEEEECC-----HHHHHHHHC
Confidence 66899999999998861 235656554
No 349
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=37.23 E-value=1.6e+02 Score=28.85 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=66.8
Q ss_pred ecCCCCCeeEEEEEeCCc----hHHHHHHHhhhcCCCCceEEEEeeCCCCCC----------------------------
Q 024345 122 VPDIDPKYKVAVLASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRGP---------------------------- 169 (269)
Q Consensus 122 ~~~~~~~~riav~~Sg~g----~~l~~ll~~~~~g~l~~~i~~Visn~~~~~---------------------------- 169 (269)
+...++.++|+||+-|-. .....|+++.++|- .+.. |+++|...|
T Consensus 130 iA~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~--~Nfs-vl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I~G 206 (369)
T TIGR00075 130 IAKENPDRKVVFFAIGFETTAPTTASTLLSAKAEDI--NNFF-FLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTIIG 206 (369)
T ss_pred HHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCC--CcEE-EEEeccccHHHHHHHHcCCCCCccEEEecCEEEEEec
Confidence 344567789999999975 34445555554442 2333 233332100
Q ss_pred ChhHHHHHHhCCCCeEEeCCCCCchH--HHHHHHhc---cCCEEEEEecceeee--cccccccccccCCCccccCCCCCC
Q 024345 170 NSHVIRFLERHGIPYHYLCAKENERE--EELLELVQ---NTDFLVLARYMQVNR--IRLYVAQLFSCLVTEQLTVLNSSL 242 (269)
Q Consensus 170 ~~~v~~~a~~~gIP~~~~~~~~~~~e--~~l~~~l~---~~Dlivla~y~~il~--l~~~~~~~iN~~~~~iHpSLLP~~ 242 (269)
..+-..+++++++|+.+-. +...| ..++.+++ +=+.-|-..|.|.++ =+.....+|| =|+|.-.+ .|
T Consensus 207 ~~~y~~l~~~y~~P~VVaG--FEp~DiL~~i~~ll~qi~~g~~~v~N~Y~R~V~~eGN~~Aq~~i~-~vFe~~d~---~W 280 (369)
T TIGR00075 207 AKPYAPIAEKYKIPIVIAG--FEPVDILQAIYMLLKQAISGEAKVENQYKRAVKPEGNVKAQKAID-EVFEREDR---EW 280 (369)
T ss_pred cchhHHHHHHcCCCeEEec--cCHHHHHHHHHHHHHHHHCCCceEEEeeceeeCCccCHHHHHHHH-HHcccCCC---cc
Confidence 0245778999999999843 11111 23334443 455566678999998 1112223555 44445555 88
Q ss_pred CCCcHHH
Q 024345 243 GGINISL 249 (269)
Q Consensus 243 rG~~p~~ 249 (269)
||...+.
T Consensus 281 RGlG~Ip 287 (369)
T TIGR00075 281 RGLGVIK 287 (369)
T ss_pred cCCCccC
Confidence 9876553
No 350
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=37.20 E-value=58 Score=26.04 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=28.7
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEe
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~ 187 (269)
+++|...++.+|- .|+ +..+.+-+|-+..-.-.+..+|+.+|||++.+
T Consensus 26 lv~G~~~vlkalk----~gk--aklViiA~D~~~~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 26 YTLGTKSTLKALR----NGK--AKLVIISNNCPPIRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred eeecHHHHHHHHH----cCC--eeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEe
Confidence 5666656666543 453 44444444442111135788899999999864
No 351
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=37.13 E-value=90 Score=27.78 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=39.7
Q ss_pred eeEEEEEeCC-ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHH-HHhCCCCeEEeCCCCCchHHHHHHHh--c
Q 024345 129 YKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF-LERHGIPYHYLCAKENEREEELLELV--Q 203 (269)
Q Consensus 129 ~riav~~Sg~-g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~-a~~~gIP~~~~~~~~~~~e~~l~~~l--~ 203 (269)
||++|.|-|+ |. -.+.|.+ .| ++++++..|++ .+.++ +.+.+.-++..+.. +++.++.. +
T Consensus 1 m~iiIiG~G~vG~~va~~L~~---~g---~~Vv~Id~d~~-----~~~~~~~~~~~~~~v~gd~t----~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE---EG---HNVVLIDRDEE-----RVEEFLADELDTHVVIGDAT----DEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh---CC---CceEEEEcCHH-----HHHHHhhhhcceEEEEecCC----CHHHHHhcCCC
Confidence 6899999999 44 4444443 44 68888888763 24442 33466555554421 22333333 2
Q ss_pred cCCEEEEEe
Q 024345 204 NTDFLVLAR 212 (269)
Q Consensus 204 ~~Dlivla~ 212 (269)
++|.+|.+-
T Consensus 66 ~aD~vva~t 74 (225)
T COG0569 66 DADAVVAAT 74 (225)
T ss_pred cCCEEEEee
Confidence 788877653
No 352
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=37.09 E-value=1.2e+02 Score=28.87 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=30.0
Q ss_pred CeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeE
Q 024345 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~ 185 (269)
|+||+|.|.|. |..+...+.. .+ ..++++|.... ......+|+++|.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~--~~--d~eLvav~d~~----~~~~~~la~~~G~~~~ 51 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAA--QP--DMELVGVAKTK----PDYEARVAVEKGYPLY 51 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhc--CC--CcEEEEEECCC----hHHHHHHHHhcCCCcc
Confidence 57999999976 5444443332 22 47888876532 2345556776776643
No 353
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=37.06 E-value=1.7e+02 Score=27.48 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=24.6
Q ss_pred hHHHHHHHhhhcCCCCceEEEEee-CCCCCCChh-HHHHHHhCCCCeEEeC
Q 024345 140 HCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSH-VIRFLERHGIPYHYLC 188 (269)
Q Consensus 140 ~~l~~ll~~~~~g~l~~~i~~Vis-n~~~~~~~~-v~~~a~~~gIP~~~~~ 188 (269)
.-+.-|..+.++|. .+++ +++ .+|....+. ......++|||+.+++
T Consensus 138 tv~~~l~~A~~~g~-~~~V--~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~ 185 (303)
T TIGR00524 138 TALGVIRSAWEDGK-RIRV--IACETRPRNQGSRLTAWELMQDGIDVTLIT 185 (303)
T ss_pred hHHHHHHHHHHcCC-ceEE--EECCCCCccchHHHHHHHHHHCCCCEEEEC
Confidence 34444445555664 3443 333 344323322 3455667899999986
No 354
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=36.94 E-value=89 Score=29.10 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
+.+||+|+|.|. |..+-..+.. .| ..+| .++|+ ......++|+++|..+. + .+ ++.+.+.++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~--~g--~~~V--~v~~r---~~~ra~~la~~~g~~~~--~-----~~-~~~~~l~~a 239 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAA--KG--VAEI--TIANR---TYERAEELAKELGGNAV--P-----LD-ELLELLNEA 239 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHH--cC--CCEE--EEEeC---CHHHHHHHHHHcCCeEE--e-----HH-HHHHHHhcC
Confidence 468999999876 3322222221 23 1233 34555 23456788999886322 2 11 344555689
Q ss_pred CEEEEEecc
Q 024345 206 DFLVLARYM 214 (269)
Q Consensus 206 Dlivla~y~ 214 (269)
|+++.+--.
T Consensus 240 DvVi~at~~ 248 (311)
T cd05213 240 DVVISATGA 248 (311)
T ss_pred CEEEECCCC
Confidence 999887543
No 355
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=36.93 E-value=61 Score=31.86 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCCh-hHHHHHHhC
Q 024345 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-HVIRFLERH 180 (269)
Q Consensus 102 L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~-~v~~~a~~~ 180 (269)
|...=..+...+|.... .--+|.||+|+.||+. |++--+..+ +.+| .|. |. -+..+.+++
T Consensus 155 L~p~~i~llas~Gi~~V-----~V~rkprV~IisTGdE-----Lv~~~~~l~-~gqI----~ds----N~~~l~a~l~~~ 215 (404)
T COG0303 155 LTPAEIALLASLGIAEV-----KVYRKPRVAIISTGDE-----LVEPGQPLE-PGQI----YDS----NSYMLAALLERA 215 (404)
T ss_pred cCHHHHHHHHhCCCceE-----EEecCCEEEEEecCcc-----ccCCCCCCC-CCeE----Eec----CHHHHHHHHHHc
Confidence 44444444555665432 1236789999999974 222110000 1233 221 33 467788999
Q ss_pred CCCeEEeC-CCCCchHHHHHHHhc----cCCEEEEEec
Q 024345 181 GIPYHYLC-AKENEREEELLELVQ----NTDFLVLARY 213 (269)
Q Consensus 181 gIP~~~~~-~~~~~~e~~l~~~l~----~~Dlivla~y 213 (269)
|..++... .++ +++++.+.++ ++|+||..|=
T Consensus 216 G~e~~~~giv~D--d~~~l~~~i~~a~~~~DviItsGG 251 (404)
T COG0303 216 GGEVVDLGIVPD--DPEALREAIEKALSEADVIITSGG 251 (404)
T ss_pred CCceeeccccCC--CHHHHHHHHHHhhhcCCEEEEeCC
Confidence 98666555 322 2344555554 7999998763
No 356
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=36.81 E-value=1e+02 Score=26.69 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=28.2
Q ss_pred CeeEEEEEeCC-ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEe
Q 024345 128 KYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (269)
Q Consensus 128 ~~riav~~Sg~-g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~ 187 (269)
.++|+|++.|. |+ --++|-| .| .+ .+|..+ ++++-.+.|++.|..+..+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrD---SG---~~--V~Vglr---~~s~s~~~A~~~Gf~v~~~ 54 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRD---SG---VN--VIVGLR---EGSASWEKAKADGFEVMSV 54 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHH---CC----E--EEEEE----TTCHHHHHHHHTT-ECCEH
T ss_pred CCEEEEECCChHHHHHHHHHHh---CC---CC--EEEEec---CCCcCHHHHHHCCCeeccH
Confidence 47999999987 32 2223323 34 33 356666 4556788899999876543
No 357
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=36.77 E-value=2.6e+02 Score=25.17 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=40.0
Q ss_pred CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCC-----ChhHHHHHHhCCCCeEEeC
Q 024345 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~-----~~~v~~~a~~~gIP~~~~~ 188 (269)
..||+|..||.- ..|..++...... .++.++-.|+.-.. ...+..+|+..|+|.++..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~---~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR---IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVER 85 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC---ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEE
Confidence 579999999985 5555555543222 57777777764321 1358899999999988765
No 358
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=36.69 E-value=90 Score=24.88 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=25.0
Q ss_pred HHHHhhhcCCCCceEEEEeeCCCC-CC-----C-hhHHHHHHhCCCCeEE
Q 024345 144 DFLYGWQEGKLPVEITCVISNHDR-GP-----N-SHVIRFLERHGIPYHY 186 (269)
Q Consensus 144 ~ll~~~~~g~l~~~i~~Visn~~~-~~-----~-~~v~~~a~~~gIP~~~ 186 (269)
++++.+++| +|.+||..+++ .+ + -.+++.|.+++|||..
T Consensus 61 ~i~~~i~~g----~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 61 QIGALIAEG----EIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred HHHHHHHcC----ceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 344555566 56667666542 11 1 2477889999999997
No 359
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=36.64 E-value=61 Score=26.40 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=29.9
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC--hhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~--~~v~~~a~~~gIP~~~~~ 188 (269)
+.+|.-.++. +++.|+ +.++.+-.|-++ .+ .++..+|+++|||+.++.
T Consensus 31 lv~G~~~v~k----aikkgk--akLVilA~D~s~-~~i~~~~~~lc~~~~Vp~~~~~ 80 (122)
T PRK04175 31 IKKGTNETTK----AVERGI--AKLVVIAEDVDP-EEIVAHLPLLCEEKKIPYVYVP 80 (122)
T ss_pred EeEcHHHHHH----HHHcCC--ccEEEEeCCCCh-HHHHHHHHHHHHHcCCCEEEEC
Confidence 5566545554 444564 455555555421 12 478899999999998875
No 360
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=36.57 E-value=1.9e+02 Score=29.00 Aligned_cols=65 Identities=5% Similarity=-0.025 Sum_probs=43.5
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CC---CeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KK---NVFYSRSEFIFDPIKWPREQMDEDFFK 108 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~---g~F~m~~~v~~p~~~~~~~~L~e~L~~ 108 (269)
..+.+++...+ .|-.+++=+.+.++++||.++.+.... .. ..|..-+.++.+. .+..++-+.|..
T Consensus 38 ~~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~ 106 (457)
T TIGR01269 38 QNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANE--INMSLLIESLRG 106 (457)
T ss_pred eeEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccH--hhHHHHHHHHHh
Confidence 55567776666 999999999999999999999996431 12 4565556665442 234444444444
No 361
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=36.56 E-value=16 Score=29.73 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=31.1
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhhcC----CCCceE-EEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQEG----KLPVEI-TCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~~g----~l~~~i-~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
.+.||-|+|..+..-|..+=...+.. -+..++ +.|+|+.-. +.....+.|+++|+|+...+
T Consensus 47 ~~~RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~-~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 47 HPNRIQIIGNTESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLE-PPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp TTCSEEEE-HHHHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT----HHHHHHHHHCT--EEEES
T ss_pred CCCeEEEEcHHHHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCC-CCHHHHHHHHHhCCcEEEcC
Confidence 33499999998864443321111110 012233 345665432 55679999999999999865
No 362
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=36.43 E-value=31 Score=30.24 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=41.6
Q ss_pred eEEEEEeCCc-hHHHHHHHhhhcCCCCc-eEEEEeeCCCCCCC--hhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 130 KVAVLASKQE-HCLVDFLYGWQEGKLPV-EITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 130 riav~~Sg~g-~~l~~ll~~~~~g~l~~-~i~~Visn~~~~~~--~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
||+|.|-|+- ..+.-+-+..+...|+. +|+++=.|.+|+.. .-+.++++++|.++...... + .-+.++++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~tt--d----~~eAl~gA 74 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATT--D----RREALEGA 74 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEES--S----HHHHHTTE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeC--C----HHHHhCCC
Confidence 7899998885 22222222233566653 55444333322111 23677788999988764321 2 23566799
Q ss_pred CEEEEE
Q 024345 206 DFLVLA 211 (269)
Q Consensus 206 Dlivla 211 (269)
|+|+..
T Consensus 75 DfVi~~ 80 (183)
T PF02056_consen 75 DFVINQ 80 (183)
T ss_dssp SEEEE-
T ss_pred CEEEEE
Confidence 999874
No 363
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=36.20 E-value=1.6e+02 Score=28.62 Aligned_cols=48 Identities=8% Similarity=0.001 Sum_probs=27.3
Q ss_pred CchHHHHHHHhhhcCCCCceEEEEee-CCCCCCChhHH-HHHHhCCCCeEEeC
Q 024345 138 QEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHVI-RFLERHGIPYHYLC 188 (269)
Q Consensus 138 ~g~~l~~ll~~~~~g~l~~~i~~Vis-n~~~~~~~~v~-~~a~~~gIP~~~~~ 188 (269)
.|+-|.-|..+.++|+ .+..+++ .+|....+... ....+.|||+.+++
T Consensus 177 ~gTal~vi~~A~~~gk---~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~ 226 (356)
T PRK08334 177 LGTVGAVLRVMHKDGT---LKLLWVDETRPVLQGARLSAWEYHYDGIPLKLIS 226 (356)
T ss_pred cchHHHHHHHHHHcCC---eEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEe
Confidence 3556665556666674 3333333 45333334443 33578899999987
No 364
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=36.06 E-value=5.2e+02 Score=27.85 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=65.4
Q ss_pred HhCCCeEeEeeeec---cCCCCeEEEE--------EEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeecCCCCCeeEE
Q 024345 64 ASRGGNILAADVFV---PEKKNVFYSR--------SEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVA 132 (269)
Q Consensus 64 a~~giNI~dl~~~~---~~~~g~F~m~--------~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~~~~~~~ria 132 (269)
...|++..++...+ .+..|+|... ..+-.+- ..+++.++..|+.+.+ +. ....+++|+
T Consensus 320 ~~lgi~~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~Dy-ahnP~s~~a~l~~l~~-~~---------~~~~~r~i~ 388 (958)
T PRK11929 320 KKLGLPLAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVDY-AHTPDALAKALTALRP-VA---------QARNGRLVC 388 (958)
T ss_pred HHcCCCHHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEEC-CCCHHHHHHHHHHHHH-hc---------ccCCCcEEE
Confidence 34677777665432 2345666533 1122222 4578899999888743 11 001235799
Q ss_pred EEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCCh-hHHHHHHhCCCC----eEEeCCCCCchHHHHHHHhc--
Q 024345 133 VLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-HVIRFLERHGIP----YHYLCAKENEREEELLELVQ-- 203 (269)
Q Consensus 133 v~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~-~v~~~a~~~gIP----~~~~~~~~~~~e~~l~~~l~-- 203 (269)
||+.+. ....+.++..+.... ...+.+..+.++..+. .+.+... .|++ +..++ ++++.+...++
T Consensus 389 V~g~g~~r~~~~~~~~~~~~~~~--~d~vi~t~~~pr~e~p~~i~~~i~-~~~~~~~~~~~~~----d~~~Ai~~a~~~a 461 (958)
T PRK11929 389 VFGCGGDRDKGKRPEMGRIAAEL--ADRVVVTSDNPRSEAPEAIIDQIL-AGIPAGARVFVIS----DRAEAIRQAIWMA 461 (958)
T ss_pred EECCCCCCCcchhHHHHHHHHHh--CCEEEEcCCCCCCCCHHHHHHHHH-hhccCCCceEEEC----CHHHHHHHHHHhc
Confidence 999764 344455555443221 2233233333332222 2333222 2443 44443 23444444433
Q ss_pred -cCCEEEEEecc
Q 024345 204 -NTDFLVLARYM 214 (269)
Q Consensus 204 -~~Dlivla~y~ 214 (269)
.-|+|+++|=+
T Consensus 462 ~~gD~VLv~GsG 473 (958)
T PRK11929 462 APGDVILIAGKG 473 (958)
T ss_pred CCCCEEEEeecC
Confidence 57888888644
No 365
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=36.04 E-value=2.1e+02 Score=26.27 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=52.5
Q ss_pred EEEEEeCCchHH----HHHHHhhhcCCCCceEEEEeeCCCCCCC-------hhHHHHHHhCCCCeEEeCCCCCchH-HHH
Q 024345 131 VAVLASKQEHCL----VDFLYGWQEGKLPVEITCVISNHDRGPN-------SHVIRFLERHGIPYHYLCAKENERE-EEL 198 (269)
Q Consensus 131 iav~~Sg~g~~l----~~ll~~~~~g~l~~~i~~Visn~~~~~~-------~~v~~~a~~~gIP~~~~~~~~~~~e-~~l 198 (269)
+.++.+..++.+ .++++.+.. ...+..|++.-|.... ..+.+.++.+||+++.++....+.+ .+.
T Consensus 118 ~ly~i~~~~~~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~~~~~~~~~ 194 (276)
T cd01850 118 CLYFIEPTGHGLKPLDIEFMKRLSK---RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDEEDDETIEE 194 (276)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhc---cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCcccHHHHHH
Confidence 455565554333 344665544 2567777776654221 2477889999999998763221111 112
Q ss_pred HHHhc-cCCEEEEEec------ceeeecccccccccc
Q 024345 199 LELVQ-NTDFLVLARY------MQVNRIRLYVAQLFS 228 (269)
Q Consensus 199 ~~~l~-~~Dlivla~y------~~il~l~~~~~~~iN 228 (269)
.+.+. .+-+.|+.+= ++.+..+.||.|+++
T Consensus 195 ~~~~~~~~Pfavi~s~~~~~~~g~~~~~R~y~WG~~~ 231 (276)
T cd01850 195 NKKLRSLIPFAVVGSNEEVEVNGKKVRGRKYPWGVVE 231 (276)
T ss_pred HHhhccCCCcEEEecCceeecCCcEEEEecCCccEEe
Confidence 23333 3344444332 344447899999988
No 366
>PRK07742 phosphate butyryltransferase; Validated
Probab=35.83 E-value=1.8e+02 Score=27.07 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=50.8
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCC----CeEEeCCCCCch-HHHHHHH
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI----PYHYLCAKENER-EEELLEL 201 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gI----P~~~~~~~~~~~-e~~l~~~ 201 (269)
.++||+|-...+...+++..+..++|. .++.+ +.++ ..+.+.++++|+ .+..++..+... -....++
T Consensus 14 ~~~ri~~~~~~d~~vl~Aa~~a~~e~~--~~~iL-vG~~-----~~I~~~~~~~~l~~~~~~~Ii~~~~~~~s~~~a~~l 85 (299)
T PRK07742 14 PKKTVAVAVAEDEEVIEAVAKAIELQL--ARFRL-YGNQ-----EKIMGMLQEHGLQTSEHIEIIHAQSSAEAAELAVKA 85 (299)
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHHcCC--ceEEE-ECCH-----HHHHHHHHHCCCCCCCCcEEECCCCHHHHHHHHHHH
Confidence 457999988777799999888887873 55543 4443 347788888887 234444321111 0223556
Q ss_pred hc--cCCEEEEEec
Q 024345 202 VQ--NTDFLVLARY 213 (269)
Q Consensus 202 l~--~~Dlivla~y 213 (269)
++ ++|.+|..+-
T Consensus 86 V~~G~aD~lvsG~~ 99 (299)
T PRK07742 86 VRNGEADVLMKGNV 99 (299)
T ss_pred HHCCCCCEEEECCc
Confidence 66 8999998765
No 367
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=35.75 E-value=67 Score=25.29 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=26.3
Q ss_pred hHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEec
Q 024345 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 213 (269)
Q Consensus 172 ~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y 213 (269)
.+.+.|+++|+++..... ...++-+.+.+.|+++++-=
T Consensus 19 km~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill~PQ 56 (99)
T cd05565 19 ALNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVILAPQ 56 (99)
T ss_pred HHHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEEcCh
Confidence 478999999999886432 13345455558898888653
No 368
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=35.73 E-value=1.9e+02 Score=27.14 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=71.3
Q ss_pred cChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEE---EEe-CCCCCCHHHHHHHHHhhhhhhccceeeeeecCCCCC
Q 024345 53 VGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE---FIF-DPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPK 128 (269)
Q Consensus 53 pGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~---v~~-p~~~~~~~~L~e~L~~la~el~l~~~~~~~~~~~~~ 128 (269)
.--|.+.++.|+.. +++.=+.......-..|.-... +.. .+....+.+.-.++..+.+.+|- -..
T Consensus 82 gEsi~Dta~vls~y-~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~----------l~g 150 (301)
T TIGR00670 82 GETLADTIKTLSGY-SDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGR----------LDG 150 (301)
T ss_pred CcCHHHHHHHHHHh-CCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCC----------CCC
Confidence 34677777877777 7777666532100001110011 111 11112344444445555555541 144
Q ss_pred eeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCC-CChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCC
Q 024345 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (269)
Q Consensus 129 ~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~-~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~D 206 (269)
.||+++|-+. +..+..++.... .++.++. ++.++.. ++..+.+.|+++|..+...+ ++.+.++++|
T Consensus 151 ~~va~vGD~~~~~v~~Sl~~~~a--~~g~~v~--~~~P~~~~~~~~~~~~~~~~G~~v~~~~--------d~~~a~~~aD 218 (301)
T TIGR00670 151 LKIALVGDLKYGRTVHSLAEALT--RFGVEVY--LISPEELRMPKEILEELKAKGIKVRETE--------SLEEVIDEAD 218 (301)
T ss_pred CEEEEEccCCCCcHHHHHHHHHH--HcCCEEE--EECCccccCCHHHHHHHHHcCCEEEEEC--------CHHHHhCCCC
Confidence 7999999864 333344443322 1234543 4444332 34567788888888776643 2345667899
Q ss_pred EEEEEec
Q 024345 207 FLVLARY 213 (269)
Q Consensus 207 livla~y 213 (269)
+|..-++
T Consensus 219 vvyt~~~ 225 (301)
T TIGR00670 219 VLYVTRI 225 (301)
T ss_pred EEEECCc
Confidence 9988654
No 369
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=35.71 E-value=86 Score=23.40 Aligned_cols=38 Identities=26% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHhhhcCCCCceEEEEeeCCCC-----CC-ChhHHHHHHhCCCCeE
Q 024345 144 DFLYGWQEGKLPVEITCVISNHDR-----GP-NSHVIRFLERHGIPYH 185 (269)
Q Consensus 144 ~ll~~~~~g~l~~~i~~Visn~~~-----~~-~~~v~~~a~~~gIP~~ 185 (269)
++++.+++| +|.+||.++.+ .. ...+.+.|.++|||+.
T Consensus 46 ~i~~~i~~g----~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNG----EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCC----CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 355555566 46666665432 11 2358888999999986
No 370
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=35.70 E-value=2.8e+02 Score=26.94 Aligned_cols=89 Identities=8% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhh-cCCCCceEEEEeeCCCCCC-----------ChhHHHHHHhCCCCeEEeCCCCCch
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLCAKENER 194 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~-~g~l~~~i~~Visn~~~~~-----------~~~v~~~a~~~gIP~~~~~~~~~~~ 194 (269)
...|+.++|+|+. .+.+++..+ ++..+.++++.+.+.+... ...+.+.++++++....+.....+.
T Consensus 127 ~~~rvLIiGag~~--~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~ 204 (451)
T TIGR03023 127 NLRRVLIVGAGEL--GRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLAAE 204 (451)
T ss_pred CCCcEEEEeCCHH--HHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCcccH
Confidence 3568999988863 233444433 3345688999887653311 0235677888888877766222111
Q ss_pred --HHHHHHHhc--cCCEEEEEecceee
Q 024345 195 --EEELLELVQ--NTDFLVLARYMQVN 217 (269)
Q Consensus 195 --e~~l~~~l~--~~Dlivla~y~~il 217 (269)
-.++++.++ +.++.++-....+.
T Consensus 205 ~~~~~ll~~~~~~gv~V~vvP~~~e~~ 231 (451)
T TIGR03023 205 DRILELLDALEDLTVDVRLVPDLFDFA 231 (451)
T ss_pred HHHHHHHHHHHhcCCEEEEeCchhhhc
Confidence 134555554 67777776665544
No 371
>PRK11579 putative oxidoreductase; Provisional
Probab=35.69 E-value=2.2e+02 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=20.0
Q ss_pred CCeeEEEEEeCCchH--HHHHHHhhhcCCCCceEEEEeeC
Q 024345 127 PKYKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISN 164 (269)
Q Consensus 127 ~~~riav~~Sg~g~~--l~~ll~~~~~g~l~~~i~~Visn 164 (269)
+++||+|+|.|.... ....+.. .+ .+++++|...
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~--~~--~~~l~av~d~ 38 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAG--TP--GLELAAVSSS 38 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhh--CC--CCEEEEEECC
Confidence 468999999998422 1222222 12 3688877553
No 372
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.46 E-value=3.2e+02 Score=24.25 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=72.4
Q ss_pred EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeecC
Q 024345 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (269)
Q Consensus 45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~~ 124 (269)
+-|+=.+.+.-..++++.|.+-|+...|++.. .|+ -.+.++++.+++.
T Consensus 7 v~Vir~~~~~~a~~ia~al~~gGi~~iEit~~---------------tp~-------a~~~I~~l~~~~~---------- 54 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAGGLPAIEITLR---------------TPA-------ALDAIRAVAAEVE---------- 54 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC---------------Ccc-------HHHHHHHHHHHCC----------
Confidence 34444556668889999999988877777552 121 1223344443432
Q ss_pred CCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (269)
Q Consensus 125 ~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~- 203 (269)
+ +.+|-|+-.+.+++-+.++.|- + .++|-. -+..+.++|+++|+|+.--. . .-.|+.+.++
T Consensus 55 -----~-~~vGAGTVl~~e~a~~ai~aGA---~--FivSP~---~~~~vi~~a~~~~i~~iPG~--~--TptEi~~A~~~ 116 (201)
T PRK06015 55 -----E-AIVGAGTILNAKQFEDAAKAGS---R--FIVSPG---TTQELLAAANDSDVPLLPGA--A--TPSEVMALREE 116 (201)
T ss_pred -----C-CEEeeEeCcCHHHHHHHHHcCC---C--EEECCC---CCHHHHHHHHHcCCCEeCCC--C--CHHHHHHHHHC
Confidence 1 3467777666677666666672 2 356644 45679999999999998422 1 1346777777
Q ss_pred cCCEEEE
Q 024345 204 NTDFLVL 210 (269)
Q Consensus 204 ~~Dlivl 210 (269)
++|++=+
T Consensus 117 Ga~~vK~ 123 (201)
T PRK06015 117 GYTVLKF 123 (201)
T ss_pred CCCEEEE
Confidence 7887644
No 373
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=35.17 E-value=91 Score=24.43 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=19.2
Q ss_pred EEEEEEcCCCcChHHHHHHHHHhCCCeEeE
Q 024345 43 GIHVFHCPDEVGIVAKLSECIASRGGNILA 72 (269)
Q Consensus 43 ~iItV~G~DrpGIVa~VS~~La~~giNI~d 72 (269)
+.+++.-.|++.++ .+++.|.++|..|..
T Consensus 2 i~isv~d~~K~~~~-~~a~~l~~~G~~i~A 30 (112)
T cd00532 2 VFLSVSDHVKAMLV-DLAPKLSSDGFPLFA 30 (112)
T ss_pred EEEEEEcccHHHHH-HHHHHHHHCCCEEEE
Confidence 34666666777666 677777777766653
No 374
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=35.01 E-value=1.1e+02 Score=31.45 Aligned_cols=69 Identities=25% Similarity=0.370 Sum_probs=41.4
Q ss_pred CeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--c
Q 024345 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~ 204 (269)
..+|.++|.|+ |..+-..|.+ +| .+++ +-++| ..-.+.+++.|.++++-|.. +.++++... +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g---~~vv--vID~d----~~~v~~~~~~g~~v~~GDat----~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SG---VKMT--VLDHD----PDHIETLRKFGMKVFYGDAT----RMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CC---CCEE--EEECC----HHHHHHHHhcCCeEEEEeCC----CHHHHHhcCCCc
Confidence 47899999998 5666555543 23 3343 33332 23466678899999987632 234444433 6
Q ss_pred CCEEEEE
Q 024345 205 TDFLVLA 211 (269)
Q Consensus 205 ~Dlivla 211 (269)
+|++|++
T Consensus 465 A~~vvv~ 471 (621)
T PRK03562 465 AEVLINA 471 (621)
T ss_pred CCEEEEE
Confidence 7776655
No 375
>PRK14436 acylphosphatase; Provisional
Probab=34.99 E-value=1.8e+02 Score=22.26 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 100 ~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
=-+|--...+|.++++.=|++.. +.-+|-+.+.|+...++++++.+++|.-.+.|.-+-.
T Consensus 17 VGFR~~v~~~A~~l~l~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 76 (91)
T PRK14436 17 VGFRWSMQREARKLGVNGWVRNL----PDGSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEV 76 (91)
T ss_pred cCcHHHHHHHHHHcCCEEEEEEC----CCCcEEEEEEcCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 34778888899999998766533 2246778888888889999998887754466665544
No 376
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=34.89 E-value=41 Score=25.94 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=18.5
Q ss_pred EEEE-eeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 158 ITCV-ISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 158 i~~V-isn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
+.++ +|... .++..+.++|++.|||+...+
T Consensus 62 i~~iIltg~~-~~~~~v~~la~~~~i~vi~t~ 92 (105)
T PF07085_consen 62 IACIILTGGL-EPSEEVLELAKELGIPVISTP 92 (105)
T ss_dssp ECEEEEETT-----HHHHHHHHHHT-EEEE-S
T ss_pred CCEEEEeCCC-CCCHHHHHHHHHCCCEEEEEC
Confidence 5444 55432 267789999999999999876
No 377
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.88 E-value=2e+02 Score=24.79 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHH
Q 024345 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177 (269)
Q Consensus 99 ~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a 177 (269)
..++.+.+++.+++.|. ++-++.+... ....++++....+. +-++|..... ++....+.+
T Consensus 14 ~~~~~~gi~~~~~~~g~--------------~~~~~~~~~~~~~~~~~i~~l~~~~----~dgiii~~~~-~~~~~~~~~ 74 (270)
T cd06296 14 ASEVLRGVEEAAAAAGY--------------DVVLSESGRRTSPERQWVERLSARR----TDGVILVTPE-LTSAQRAAL 74 (270)
T ss_pred HHHHHHHHHHHHHHcCC--------------eEEEecCCCchHHHHHHHHHHHHcC----CCEEEEecCC-CChHHHHHH
Confidence 57788888888877763 3333433332 33334444433342 2222222211 234567888
Q ss_pred HhCCCCeEEeC
Q 024345 178 ERHGIPYHYLC 188 (269)
Q Consensus 178 ~~~gIP~~~~~ 188 (269)
.+.|||+..++
T Consensus 75 ~~~~ipvV~i~ 85 (270)
T cd06296 75 RRTGIPFVVVD 85 (270)
T ss_pred hcCCCCEEEEe
Confidence 99999999887
No 378
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=34.86 E-value=1e+02 Score=31.59 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=40.8
Q ss_pred CeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--c
Q 024345 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~ 204 (269)
+.+|.++|.|+ |..+-..+.. .| .+++ +-++| ....+.+++.|.|+++-|.. +.++++... +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g---~~vv--vID~d----~~~v~~~~~~g~~v~~GDat----~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA--NK---MRIT--VLERD----ISAVNLMRKYGYKVYYGDAT----QLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh--CC---CCEE--EEECC----HHHHHHHHhCCCeEEEeeCC----CHHHHHhcCCcc
Confidence 46899999888 4555554542 23 3443 33331 23467778899999987632 234444433 6
Q ss_pred CCEEEEE
Q 024345 205 TDFLVLA 211 (269)
Q Consensus 205 ~Dlivla 211 (269)
+|.+|++
T Consensus 465 A~~vv~~ 471 (601)
T PRK03659 465 AEAIVIT 471 (601)
T ss_pred CCEEEEE
Confidence 6665554
No 379
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=34.84 E-value=2.1e+02 Score=22.24 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHhCCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 54 GIVa~VS~~La~~giNI~dl~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
.+...+...+.+.|+++..++.......+.|. +.+.+.+.. +.+.|..-|..|....
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g---~~~~L~~~L~~LE~~~ 74 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEG---DIEALQAFLYALESGR 74 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEe---CHHHHHHHHHHHhcCC
Confidence 46788999999999999999886433344454 455555543 6899999999987554
No 380
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=34.73 E-value=1.9e+02 Score=21.85 Aligned_cols=52 Identities=13% Similarity=0.251 Sum_probs=35.5
Q ss_pred CCcChH----HHHHHHHHhCCCe-EeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 51 DEVGIV----AKLSECIASRGGN-ILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 51 DrpGIV----a~VS~~La~~giN-I~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
-|||+- .+|.+.|...|.+ +.++.+ |.++ .+.++.+ +.++-++..+++|+++
T Consensus 9 ~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~------GK~~-~l~~~~~----~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 9 LKPGVLDPQGEAIKRALHRLGYDGVKDVRV------GKYI-ELELEAD----DEEEAEEQVEEICEKL 65 (80)
T ss_dssp E-TTS--HHHHHHHHHHHHTT-TTEEEEEE------EEEE-EEEEE-S----SHHHHHHHHHHHHHHT
T ss_pred ECCCCcCcHHHHHHHHHHHcCCcccCcEEE------EEEE-EEEEeCC----CHHHHHHHHHHHHHHh
Confidence 455554 4788899999988 888877 4333 3444432 5788899999999998
No 381
>PRK14430 acylphosphatase; Provisional
Probab=34.71 E-value=1.7e+02 Score=22.52 Aligned_cols=58 Identities=16% Similarity=-0.007 Sum_probs=43.5
Q ss_pred HHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 102 L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
+|--...+|.++++.=|+- +. +.-+|-+.+.|+...++.+++.++.|...++|.-|-.
T Consensus 19 FR~~~~~~A~~lgl~G~Vr--N~--~dGsVei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 76 (92)
T PRK14430 19 YRAACADAADDLGLGGWVR--NR--ADGTVEVMASGTVRQLEALRAWMEAGPPAAQVTKVEV 76 (92)
T ss_pred eHHHHHHHHHHhCCEEEEE--EC--CCCcEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 5777888899999876653 22 2346889999999999999998888764467766644
No 382
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=34.65 E-value=1.6e+02 Score=29.43 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=34.8
Q ss_pred eEEEEEeCCchHHHHHH------Hhhh-cCC-CCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC
Q 024345 130 KVAVLASKQEHCLVDFL------YGWQ-EGK-LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190 (269)
Q Consensus 130 riav~~Sg~g~~l~~ll------~~~~-~g~-l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~ 190 (269)
=..+.+|++|++++.+. +.++ .|. ....+ .+||++ .+..+.++|+++|++++.++..
T Consensus 134 Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~-vaiTd~---~~g~L~~~A~~~g~~~f~ip~~ 198 (446)
T PRK00973 134 TLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHL-VFTTDP---EKGKLKKIAEKEGYRTLEIPEN 198 (446)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceE-EEEcCC---CccchHHHHHHcCCcEEeeCCC
Confidence 46788999985544432 2221 121 11233 367765 2345899999999999888743
No 383
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=34.53 E-value=4.4e+02 Score=25.61 Aligned_cols=90 Identities=10% Similarity=0.167 Sum_probs=48.6
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhh-cCCCCceEEEEeeCCCCCC-----------ChhHHHHHHhCCCCeEEeCCCCCch
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLCAKENER 194 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~-~g~l~~~i~~Visn~~~~~-----------~~~v~~~a~~~gIP~~~~~~~~~~~ 194 (269)
.+.|++++|+|+. .+.+++.++ ++....++++++.+.+... +..+.+.++++++....+.....+.
T Consensus 124 ~~rrvlIiGag~~--~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViIAip~~~~ 201 (456)
T TIGR03022 124 WGRPAVIIGAGQN--AAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIVAMPGTQA 201 (456)
T ss_pred CCceEEEEeCCHH--HHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEEecCCccH
Confidence 3468999988863 223333332 3344578999887643211 0234567788888865554221111
Q ss_pred --HHHHHHHhc--cC-CEEEEEecceeee
Q 024345 195 --EEELLELVQ--NT-DFLVLARYMQVNR 218 (269)
Q Consensus 195 --e~~l~~~l~--~~-Dlivla~y~~il~ 218 (269)
-+++++.++ +. ++.++-....+..
T Consensus 202 ~~~~~ll~~l~~~~v~~V~~vP~~~e~~~ 230 (456)
T TIGR03022 202 EDMARLVRKLGALHFRNVLIVPSLFGLPN 230 (456)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCccccccc
Confidence 134555554 45 6666665554443
No 384
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=34.28 E-value=1.3e+02 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=26.1
Q ss_pred CChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEecc
Q 024345 169 PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM 214 (269)
Q Consensus 169 ~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y~ 214 (269)
++..+.+.++++||+.-....+. .+ +.++++|+||+..-.
T Consensus 42 ~~~~a~~~l~~~Gid~~~~~~~l---~~---~~~~~~DlIv~m~~~ 81 (140)
T smart00226 42 ADPRAVEVLKEHGIALSHHASQL---TS---SDFKNADLVLAMDHS 81 (140)
T ss_pred CCHHHHHHHHHcCcCccceeccC---CH---HHHHhCCEEEEeCHH
Confidence 56779999999999964321111 11 223479999988654
No 385
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=34.14 E-value=2.1e+02 Score=23.87 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=46.3
Q ss_pred CCCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhC-CCCeEEeCCCCC-chHHHHHHHh
Q 024345 126 DPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKEN-EREEELLELV 202 (269)
Q Consensus 126 ~~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~-gIP~~~~~~~~~-~~e~~l~~~l 202 (269)
.++++|++.++... .-+.++....++---.+++. .| . ...++.+++ ||++..+- .+. ....++.+.+
T Consensus 2 ~~~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~--AT-~------gTa~~L~~~~Gi~v~~vi-~~~~gg~~~i~~~I 71 (142)
T PRK05234 2 PARKRIALIAHDHKKDDLVAWVKAHKDLLEQHELY--AT-G------TTGGLIQEATGLDVTRLL-SGPLGGDQQIGALI 71 (142)
T ss_pred CcCcEEEEEEeccchHHHHHHHHHHHHHhcCCEEE--Ee-C------hHHHHHHhccCCeeEEEE-cCCCCCchhHHHHH
Confidence 35678888888775 55666655433210035542 33 3 246777788 99987652 110 0135688888
Q ss_pred c--cCCEEEEEe
Q 024345 203 Q--NTDFLVLAR 212 (269)
Q Consensus 203 ~--~~Dlivla~ 212 (269)
+ ++|+||...
T Consensus 72 ~~g~i~lVInt~ 83 (142)
T PRK05234 72 AEGKIDMLIFFR 83 (142)
T ss_pred HcCceeEEEEec
Confidence 7 799988754
No 386
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.08 E-value=1.1e+02 Score=28.97 Aligned_cols=23 Identities=17% Similarity=0.084 Sum_probs=16.8
Q ss_pred CCCCeeEEEEEeCCc-hHHHHHHH
Q 024345 125 IDPKYKVAVLASKQE-HCLVDFLY 147 (269)
Q Consensus 125 ~~~~~riav~~Sg~g-~~l~~ll~ 147 (269)
...++||+|+|+|.. +.+-..+.
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La 27 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICA 27 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHH
Confidence 346689999999994 66655554
No 387
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=33.92 E-value=1.2e+02 Score=29.99 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=36.5
Q ss_pred CceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCC-CCCchHHHHHHHhc-cCCEEEEEec
Q 024345 155 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENEREEELLELVQ-NTDFLVLARY 213 (269)
Q Consensus 155 ~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~-~~~~~e~~l~~~l~-~~Dlivla~y 213 (269)
.++|...=||+=.-++.-+..++...|||++-+-- ...++-..+.+.++ .||+|+=-|=
T Consensus 69 GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~~~p~iiiDDG~ 129 (420)
T COG0499 69 GAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLDWEPNIIIDDGG 129 (420)
T ss_pred CceEEEecCCCCcccHHHHHHHhhccCceEEEEcCCCHHHHHHHHHHHhCcCCCEEEecCc
Confidence 48999888887443445567777888999998641 11112233444555 7777765543
No 388
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.82 E-value=3.4e+02 Score=24.09 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=72.1
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeec
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~ 123 (269)
++-|+=.+.+.-..++.+.|.+.|+...|++.+ .|+ -.+.++++.+++.
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~---------------t~~-------a~~~i~~l~~~~~--------- 58 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLR---------------TPV-------ALDAIRLLRKEVP--------- 58 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCC---------------Ccc-------HHHHHHHHHHHCC---------
Confidence 344444556667888999999999887777552 121 1223344433332
Q ss_pred CCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 124 ~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
+ +.+|-|+-.+.++.-+.++.| ++ .++|.. -+..+.++|+++|+|+.--.. ...|+.+.++
T Consensus 59 ------~-~~vGAGTVl~~~~a~~a~~aG---A~--FivsP~---~~~~v~~~~~~~~i~~iPG~~----TptEi~~A~~ 119 (204)
T TIGR01182 59 ------D-ALIGAGTVLNPEQLRQAVDAG---AQ--FIVSPG---LTPELAKHAQDHGIPIIPGVA----TPSEIMLALE 119 (204)
T ss_pred ------C-CEEEEEeCCCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCcEECCCC----CHHHHHHHHH
Confidence 1 346667766666665666567 23 346644 456799999999999985221 1346777777
Q ss_pred -cCCEEEE
Q 024345 204 -NTDFLVL 210 (269)
Q Consensus 204 -~~Dlivl 210 (269)
++|++=+
T Consensus 120 ~Ga~~vKl 127 (204)
T TIGR01182 120 LGITALKL 127 (204)
T ss_pred CCCCEEEE
Confidence 8887644
No 389
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.78 E-value=3.4e+02 Score=28.01 Aligned_cols=83 Identities=13% Similarity=0.233 Sum_probs=38.3
Q ss_pred CCeeEEEEE-eCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-CChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345 127 PKYKVAVLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (269)
Q Consensus 127 ~~~riav~~-Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l 202 (269)
+...|+|.| +|.| +.+..|...........+|..+=++.-+. .......+++..|+|++.... ..++.+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-----~~~L~~aL 423 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-----AESLLDLL 423 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-----HHHHHHHH
Confidence 334556555 4445 45555554332211123455444433221 011245567778888876431 12233333
Q ss_pred ---ccCCEEEEEecc
Q 024345 203 ---QNTDFLVLARYM 214 (269)
Q Consensus 203 ---~~~Dlivla~y~ 214 (269)
.+.|+|++=-.+
T Consensus 424 ~~l~~~DLVLIDTaG 438 (559)
T PRK12727 424 ERLRDYKLVLIDTAG 438 (559)
T ss_pred HHhccCCEEEecCCC
Confidence 367777664443
No 390
>PRK08618 ornithine cyclodeaminase; Validated
Probab=33.74 E-value=1e+02 Score=28.82 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=47.0
Q ss_pred CHHHHHHH-HHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHH
Q 024345 98 PREQMDED-FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI 174 (269)
Q Consensus 98 ~~~~L~e~-L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~ 174 (269)
....+|.+ ...++.++ +- .....+++++|+|.- ..+..++.. .+ .+-+.|+ ++. .....
T Consensus 105 ~lT~~RTaa~sala~~~-la--------~~~~~~v~iiGaG~~a~~~~~al~~~--~~---~~~v~v~-~r~---~~~a~ 166 (325)
T PRK08618 105 YLTQIRTGALSGVATKY-LA--------REDAKTLCLIGTGGQAKGQLEAVLAV--RD---IERVRVY-SRT---FEKAY 166 (325)
T ss_pred hhhhhhHHHHHHHHHHH-hc--------CCCCcEEEEECCcHHHHHHHHHHHhc--CC---ccEEEEE-CCC---HHHHH
Confidence 46667764 33444444 21 113468999999974 344444431 12 3344344 442 23345
Q ss_pred HHHH----hCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEec
Q 024345 175 RFLE----RHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 213 (269)
Q Consensus 175 ~~a~----~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y 213 (269)
++++ ++++++..++ + +.+.++++|+|+++--
T Consensus 167 ~~~~~~~~~~~~~~~~~~----~----~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 167 AFAQEIQSKFNTEIYVVN----S----ADEAIEEADIIVTVTN 201 (325)
T ss_pred HHHHHHHHhcCCcEEEeC----C----HHHHHhcCCEEEEccC
Confidence 5554 4577765543 1 1234458899988754
No 391
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.64 E-value=3.6e+02 Score=24.29 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=74.7
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeec
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~ 123 (269)
++-|+=.|.+.-..++++.|.+.|+...|++.. .|+ .. +.++++.++++.
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~---------------tp~---a~----~~i~~l~~~~~~-------- 66 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNR---------------GDF---AH----EVFAELVKYAAK-------- 66 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC---------------CCc---HH----HHHHHHHHHHHh--------
Confidence 445555667778899999999999887777552 122 12 223333333321
Q ss_pred CCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 124 ~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
..+ + +.+|.|+-.+.++.-++++.|- + .++|-. -+..+.++|+++|||+.--. . .-.|+.+.++
T Consensus 67 -~~p--~-~~vGaGTVl~~e~a~~a~~aGA---~--FiVsP~---~~~~v~~~~~~~~i~~iPG~--~--TpsEi~~A~~ 130 (222)
T PRK07114 67 -ELP--G-MILGVGSIVDAATAALYIQLGA---N--FIVTPL---FNPDIAKVCNRRKVPYSPGC--G--SLSEIGYAEE 130 (222)
T ss_pred -hCC--C-eEEeeEeCcCHHHHHHHHHcCC---C--EEECCC---CCHHHHHHHHHcCCCEeCCC--C--CHHHHHHHHH
Confidence 001 2 3477777767777666666672 2 356644 45679999999999998422 1 1346777777
Q ss_pred -cCCEEEE
Q 024345 204 -NTDFLVL 210 (269)
Q Consensus 204 -~~Dlivl 210 (269)
++|++=+
T Consensus 131 ~Ga~~vKl 138 (222)
T PRK07114 131 LGCEIVKL 138 (222)
T ss_pred CCCCEEEE
Confidence 8887654
No 392
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.55 E-value=1.6e+02 Score=26.61 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=48.5
Q ss_pred eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (269)
Q Consensus 42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~-~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la 110 (269)
.+.+++.-.|=..-+.+|.+.+.++|+.|.+.+.... ..++.-.+.+++.+|. ..++.+-+.|..++
T Consensus 51 ~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~--~~~~~~l~~l~~~g 118 (262)
T PF14257_consen 51 TADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPA--DKFDSFLDELSELG 118 (262)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECH--HHHHHHHHHHhccC
Confidence 4567788899999999999999999999999988521 2234556688888985 24555555555443
No 393
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=33.53 E-value=1.1e+02 Score=28.59 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=18.8
Q ss_pred CeeEEEEEeCC-chHHHHHHHhhhcCCC-CceEEEE
Q 024345 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKL-PVEITCV 161 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l~~ll~~~~~g~l-~~~i~~V 161 (269)
.+||+++|.|. |.-+- +.+..+.. ..++++|
T Consensus 2 ~~rvgiIG~GaIG~~va---~~l~~~~~~~~~l~~V 34 (267)
T PRK13301 2 THRIAFIGLGAIASDVA---AGLLADAAQPCQLAAL 34 (267)
T ss_pred ceEEEEECccHHHHHHH---HHHhcCCCCceEEEEE
Confidence 47999999997 33333 33334432 3677776
No 394
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=33.38 E-value=1.6e+02 Score=28.96 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=41.3
Q ss_pred CeeEEEEEeCC-ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhC--CCCeEEeCCCCCchHHHHHHHhc
Q 024345 128 KYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH--GIPYHYLCAKENEREEELLELVQ 203 (269)
Q Consensus 128 ~~riav~~Sg~-g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~--gIP~~~~~~~~~~~e~~l~~~l~ 203 (269)
|+||.++|+|. |+ ....|.. ++. .+|. |.++ ......+.+..- .+....+|.. ..+++.++++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~---~~d--~~V~--iAdR---s~~~~~~i~~~~~~~v~~~~vD~~---d~~al~~li~ 67 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQ---NGD--GEVT--IADR---SKEKCARIAELIGGKVEALQVDAA---DVDALVALIK 67 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHh---CCC--ceEE--EEeC---CHHHHHHHHhhccccceeEEeccc---ChHHHHHHHh
Confidence 57999999987 33 3333333 453 4554 3333 122233332322 5777777743 2346788888
Q ss_pred cCCEEEEEe
Q 024345 204 NTDFLVLAR 212 (269)
Q Consensus 204 ~~Dlivla~ 212 (269)
+.|+++.+.
T Consensus 68 ~~d~VIn~~ 76 (389)
T COG1748 68 DFDLVINAA 76 (389)
T ss_pred cCCEEEEeC
Confidence 889987764
No 395
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=33.27 E-value=3.5e+02 Score=24.39 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCCeEeEeeeeccC-CCCe---------------EE---EEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345 56 VAKLSECIASRGGNILAADVFVPE-KKNV---------------FY---SRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (269)
Q Consensus 56 Va~VS~~La~~giNI~dl~~~~~~-~~g~---------------F~---m~~~v~~p~~~~~~~~L~e~L~~la~el~l~ 116 (269)
..+ -..|.++|+++..+.+..+. ..|. |. +-....++. ..+.++|.+ .+.+.+++.
T Consensus 81 ~~~-~~~li~~~I~vy~~Ht~lD~~~~G~n~~La~~Lgl~~~~~~~~~g~G~vg~l~~-~~~~~~~~~---~vk~~l~~~ 155 (249)
T TIGR00486 81 PGR-LKILLQNDISLYSAHTNLDAHDGGNNDALARALGLENPKEFEDYGLGRVGEFKA-PIESLEEVL---EIKKVLNVK 155 (249)
T ss_pred HHH-HHHHHHCCCeEEEeecchhcCCCCHHHHHHHHcCCCccccccCCCceeEEECCC-CCCHHHHHH---HHHHHhCCC
Confidence 344 55688899999998886431 1111 10 111234443 455555544 444566643
Q ss_pred eeeeeecCCCCCeeEEEEEeCCchH-HHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCC
Q 024345 117 RSVVRVPDIDPKYKVAVLASKQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (269)
Q Consensus 117 ~~~~~~~~~~~~~riav~~Sg~g~~-l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (269)
..........+-.|||+++ |.|.. +...+ +.| ++ +.||-- -+-+....|++.|+.+....+
T Consensus 156 ~vr~~~~~~~~i~rVAi~~-GsG~~~~~~a~---~~g---aD--~~ITGd---~k~h~~~~A~~~gi~li~~gH 217 (249)
T TIGR00486 156 PLLVVKNGPEYVKKVAVVS-GSGLSFIMKAL---REG---VD--AYITGD---LSHHTAHLARELGLNVIDAGH 217 (249)
T ss_pred CEEEeCCCCCceeEEEEEc-CchHHHHHHHH---HcC---CC--EEEecC---CchHHHHHHHHCCCEEEEcCc
Confidence 2211112233557899974 44533 33222 244 33 346643 233456778999998887764
No 396
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=33.25 E-value=2.3e+02 Score=22.00 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 100 ~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
=.++......|.++++.=|++.+++ . +|=+++.|....++.+++.++.|.-.++|.-|-.
T Consensus 17 VGFR~~~~~~A~~lgl~G~V~N~~D--G--sVeiva~G~~~~v~~~~~~l~~g~~~a~V~~v~~ 76 (92)
T COG1254 17 VGFRYFTRSEALRLGLTGWVKNLDD--G--SVEIVAEGPDEAVEKFIEWLRKGPPAAKVERVEV 76 (92)
T ss_pred ccHHHHHHHHHHHCCCEEEEEECCC--C--eEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 3478889999999999877775543 3 7888888888779999998888843367766655
No 397
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.22 E-value=1.6e+02 Score=28.65 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=40.2
Q ss_pred EEEEEeCCchHHHHH-HHhhhcCCCCceEEEEeeCCCCCCC-------hhHHHHHHhCCCCeEEeCCC
Q 024345 131 VAVLASKQEHCLVDF-LYGWQEGKLPVEITCVISNHDRGPN-------SHVIRFLERHGIPYHYLCAK 190 (269)
Q Consensus 131 iav~~Sg~g~~l~~l-l~~~~~g~l~~~i~~Visn~~~~~~-------~~v~~~a~~~gIP~~~~~~~ 190 (269)
..+|.++.||.|..+ ++.++.=.-.+++.-||...|.... ..+.+-.+.++|+++.++..
T Consensus 133 cLYFI~P~ghgL~p~Di~~Mk~l~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 133 CLYFISPTGHGLKPLDIEFMKKLSKKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred EEEEeCCCCCCCcHhhHHHHHHHhccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCC
Confidence 578899888877554 2222222223788889997754321 34778899999999998844
No 398
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=33.12 E-value=3.3e+02 Score=26.28 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=56.7
Q ss_pred cCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCC---CC-------ChhHHHHHHhCCCCeEEeC-CCC
Q 024345 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR---GP-------NSHVIRFLERHGIPYHYLC-AKE 191 (269)
Q Consensus 123 ~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~---~~-------~~~v~~~a~~~gIP~~~~~-~~~ 191 (269)
+..+.|+||.|+++.+|-.|.+=+.. ..| -.+.-.+|.--++. .+ +....++|++.|.=...++ ..+
T Consensus 36 p~~ngPKkVLviGaSsGyGLa~RIsa-aFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaF 113 (398)
T COG3007 36 PIKNGPKKVLVIGASSGYGLAARISA-AFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAF 113 (398)
T ss_pred CccCCCceEEEEecCCcccHHHHHHH-HhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchh
Confidence 45668899999999998666554432 134 13555566655432 11 2457899999998666555 222
Q ss_pred C-chHHHHHHHhc----cCCEEE--EEecceeee
Q 024345 192 N-EREEELLELVQ----NTDFLV--LARYMQVNR 218 (269)
Q Consensus 192 ~-~~e~~l~~~l~----~~Dliv--la~y~~il~ 218 (269)
+ +--+..++.++ ++|++| +|.=+|.-|
T Consensus 114 S~e~k~kvIe~Ik~~~g~vDlvvYSlAsp~Rk~p 147 (398)
T COG3007 114 SDEMKQKVIEAIKQDFGKVDLVVYSLASPRRKHP 147 (398)
T ss_pred hHHHHHHHHHHHHHhhccccEEEEeccCccccCC
Confidence 1 11245667776 799988 344444433
No 399
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=33.10 E-value=2.5e+02 Score=26.81 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=56.3
Q ss_pred CCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC-hhHHHHHHhCCCCeE-EeCCCCCchHHHHHHH
Q 024345 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYH-YLCAKENEREEELLEL 201 (269)
Q Consensus 124 ~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~-~~v~~~a~~~gIP~~-~~~~~~~~~e~~l~~~ 201 (269)
..+++.||.=+++|.|.-+.+.+... +..+.+|.++=-++ .+ ....+..++.|+.-. .+.. .+..+.+-+..
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~--~~~~~~i~LrDys~---~Nv~~g~~li~~~gL~~i~~f~~-~dAfd~~~l~~ 205 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKH--PERPDSILLRDYSP---INVEKGRALIAERGLEDIARFEQ-GDAFDRDSLAA 205 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhC--CCCCceEEEEeCCH---HHHHHHHHHHHHcCCccceEEEe-cCCCCHhHhhc
Confidence 45688999999999997666666542 22234554332222 23 457888899988754 3321 11223344555
Q ss_pred hc-cCCEEEEEecceeee
Q 024345 202 VQ-NTDFLVLARYMQVNR 218 (269)
Q Consensus 202 l~-~~Dlivla~y~~il~ 218 (269)
+. .|+++++.|-.-.++
T Consensus 206 l~p~P~l~iVsGL~ElF~ 223 (311)
T PF12147_consen 206 LDPAPTLAIVSGLYELFP 223 (311)
T ss_pred cCCCCCEEEEecchhhCC
Confidence 56 899999999877777
No 400
>PRK14444 acylphosphatase; Provisional
Probab=33.06 E-value=2e+02 Score=22.06 Aligned_cols=59 Identities=7% Similarity=-0.081 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|-....+|.++++.=|+- +. +--.|-+.+.|+...++++++.+++|...++|..+-.
T Consensus 18 GFR~~v~~~A~~lgl~G~V~--N~--~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~ 76 (92)
T PRK14444 18 NFRAYTRDRAREAGVKGWVR--NL--SDGRVEAVFEGSRPAVQKMISWCYSGPSHARVERVEV 76 (92)
T ss_pred CcHHHHHHHHHHhCCEEEEE--EC--CCCcEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 46788888999999876543 22 2235888999998899999999887754566766533
No 401
>PRK14427 acylphosphatase; Provisional
Probab=33.06 E-value=1.8e+02 Score=22.43 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|--...+|.++++.=|+... +--.|-+.+.|+...++++++.++++.-++.|.-+-.
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~----~dGsVei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~ 78 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNL----DDGSVALVAEGTGEQVEKLLDWLNSDRAPGRVERVDH 78 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEEC----CCCeEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 3677788889999998766533 2246778888888899999999988754566766544
No 402
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=33.02 E-value=1.5e+02 Score=27.05 Aligned_cols=15 Identities=7% Similarity=0.126 Sum_probs=10.8
Q ss_pred CeeEEEEEeCC-chHH
Q 024345 128 KYKVAVLASKQ-EHCL 142 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l 142 (269)
++||+|+|.|. |..+
T Consensus 1 m~~I~iIG~G~mG~al 16 (277)
T PRK06928 1 MEKIGFIGYGSMADMI 16 (277)
T ss_pred CCEEEEECccHHHHHH
Confidence 36899999887 4433
No 403
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=32.99 E-value=96 Score=30.24 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=39.1
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
+.++|+|+|+|. |..+-..+.. .|. .+| +++|+ ......++|+++|..+..+ +++.+.+.++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~--~G~--~~V--~v~~r---~~~ra~~la~~~g~~~~~~--------~~~~~~l~~a 243 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAE--KGV--RKI--TVANR---TLERAEELAEEFGGEAIPL--------DELPEALAEA 243 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHH--CCC--CeE--EEEeC---CHHHHHHHHHHcCCcEeeH--------HHHHHHhccC
Confidence 447899999877 3333222221 341 133 35555 2345677888888643221 2344555689
Q ss_pred CEEEEEe
Q 024345 206 DFLVLAR 212 (269)
Q Consensus 206 Dlivla~ 212 (269)
|+||.+-
T Consensus 244 DvVI~aT 250 (423)
T PRK00045 244 DIVISST 250 (423)
T ss_pred CEEEECC
Confidence 9999874
No 404
>PRK14438 acylphosphatase; Provisional
Probab=32.97 E-value=1.7e+02 Score=22.38 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeC
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn 164 (269)
-+|.-...+|.++++.=|+... +.-.|-+.+.|+...++++++.+++|...+.|..+...
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 76 (91)
T PRK14438 17 AFRHHTQQTAQRLNVSGWVKNL----PNGSVQGCFEGEETDVAALIDWCHHGPSRARVSGVIVE 76 (91)
T ss_pred CccHHHHHHHHHcCCEEEEEEC----CCCEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 3677788899999998765432 23467788888888899999998887545677666543
No 405
>PRK14441 acylphosphatase; Provisional
Probab=32.81 E-value=1.9e+02 Score=22.24 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|-....+|.++++.=|+... +--+|-+.+.|+...++.+++.+++|...++|..+-.
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNL----PDGRVEAEAEGERAAVGALVRWCHAGPPAARVDRVEV 77 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEEC----CCCEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 3677788899999998765422 3346778889988899999998887754566666533
No 406
>PRK05925 aspartate kinase; Provisional
Probab=32.67 E-value=1.8e+02 Score=28.90 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=43.3
Q ss_pred ceEEEEEEcC--CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345 41 THGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (269)
Q Consensus 41 ~~~iItV~G~--DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~ 114 (269)
.-.+|+++|. -++|+.+++.+.|++.|+||....+. .. . +.+-++ .++..+++..+.++|-
T Consensus 371 ~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s-----~~-~--is~vV~-----~~d~~~av~~LH~~f~ 433 (440)
T PRK05925 371 PLALITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQS-----DM-A--LNLVVN-----EELAVAVTELLHNDYV 433 (440)
T ss_pred CEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEEEECC-----Cc-e--EEEEEe-----hHHHHHHHHHHHHHHh
Confidence 4557999997 34889999999999999999887662 11 2 233333 3556777777777774
No 407
>PRK14433 acylphosphatase; Provisional
Probab=32.66 E-value=1.5e+02 Score=22.55 Aligned_cols=59 Identities=15% Similarity=0.087 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeC
Q 024345 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (269)
Q Consensus 102 L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn 164 (269)
+|.-...+|.++++.=|+-.. .+ -.|-+.+.|+...++++++.+++|...+.|.-+-..
T Consensus 16 FR~~v~~~A~~~~l~G~V~N~--~d--G~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~i~~~ 74 (87)
T PRK14433 16 YRAFVQKKARELGLSGYAENL--SD--GRVEVVAEGPKEALERLLHWLRRGPRHARVEAVDVQ 74 (87)
T ss_pred chHHHHHHHHHcCCEEEEEEC--CC--CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 677788889999987664322 22 257788888888999999998887544667665443
No 408
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=32.65 E-value=3.2e+02 Score=24.77 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=41.8
Q ss_pred CeeEEEEEeCCc-hHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345 128 KYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (269)
Q Consensus 128 ~~riav~~Sg~g-~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~ 205 (269)
..+|.++..|.+ .++ ..+++.+.+-..+.++..|+....+ ....+.++++.++ .+.... +-+++.+++..+
T Consensus 170 ~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~-~~~~l~~~~~~~~-~i~~~~-----~~~~m~~lm~~a 242 (279)
T TIGR03590 170 LRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNP-NLDELKKFAKEYP-NIILFI-----DVENMAELMNEA 242 (279)
T ss_pred cCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCc-CHHHHHHHHHhCC-CEEEEe-----CHHHHHHHHHHC
Confidence 356766666654 443 4556655432223556655553311 1123455555443 233322 224677888899
Q ss_pred CEEEEEec
Q 024345 206 DFLVLARY 213 (269)
Q Consensus 206 Dlivla~y 213 (269)
|++|+++=
T Consensus 243 Dl~Is~~G 250 (279)
T TIGR03590 243 DLAIGAAG 250 (279)
T ss_pred CEEEECCc
Confidence 99999754
No 409
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=32.46 E-value=1.4e+02 Score=28.46 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCeeEEEEEeCC-chHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCC
Q 024345 127 PKYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP 183 (269)
+.++|+|+|.|. |+.+ +.|.+ .| .++. +.+++ +....+.|++.|+.
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~---sG---~~Vv--v~~r~---~~~s~~~A~~~G~~ 63 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRD---SG---VDVV--VGLRE---GSKSWKKAEADGFE 63 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHH---CC---CEEE--EEECC---chhhHHHHHHCCCe
Confidence 346899999998 4443 44433 34 3443 33331 22335566777764
No 410
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=32.43 E-value=3.8e+02 Score=24.75 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=47.3
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeE-EeCC-CC-Cc-hH------H
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH-YLCA-KE-NE-RE------E 196 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~-~~~~-~~-~~-~e------~ 196 (269)
|||+++...+. .-+.-++..+++.. ..+...|+|... -.-+.++.+.+||+.. .+.. .. .. .+ .
T Consensus 1 ~~i~~~~gtr~~~~~~~p~~~~l~~~~-~~~~~~~~tg~h---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T TIGR00236 1 LKVSIVLGTRPEAIKMAPLIRALKKYP-EIDSYVIVTAQH---REMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLE 76 (365)
T ss_pred CeEEEEEecCHHHHHHHHHHHHHhhCC-CCCEEEEEeCCC---HHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHH
Confidence 47877666664 55666666665421 246667777653 2346777777999743 2221 11 11 11 3
Q ss_pred HHHHHhc--cCCEEEEEec
Q 024345 197 ELLELVQ--NTDFLVLARY 213 (269)
Q Consensus 197 ~l~~~l~--~~Dlivla~y 213 (269)
++.+.++ +||+|++.|.
T Consensus 77 ~l~~~l~~~~pDiv~~~gd 95 (365)
T TIGR00236 77 GLEELLLEEKPDIVLVQGD 95 (365)
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 3455555 8999999975
No 411
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=32.32 E-value=2.5e+02 Score=22.03 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=45.2
Q ss_pred ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc-CCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (269)
Q Consensus 41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~-~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~ 111 (269)
-.+.+.|+|.-+|+...+|-+++..++-.-..=+.... +..|.|. ..+.+... +.+++...-.+|++
T Consensus 14 c~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~----~~EQ~e~ly~eL~~ 82 (90)
T COG2921 14 CTFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRAT----NIEQVEALYRELRK 82 (90)
T ss_pred ccceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 45889999999999999999999988754433222112 3457765 55555543 56777666666543
No 412
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=32.32 E-value=1.7e+02 Score=22.38 Aligned_cols=79 Identities=14% Similarity=0.015 Sum_probs=45.3
Q ss_pred CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (269)
Q Consensus 37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~ 116 (269)
.....++-..+..+|.. -..+++..+.+.|..+...........+.|...+....+....+..++...|.++|++++..
T Consensus 20 l~~~r~ieh~~~f~~~~-~~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 20 LSKPRPIEHWFYFEDEE-DAEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLDYEDINAITQELEDLAKEFGGE 98 (104)
T ss_dssp TTS-EEEEEEEEES-HH-HHHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S-HHHHHHHHHHHHHHHHHHT-E
T ss_pred CCCCeEEEEEEEeCCHH-HHHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHhCcE
Confidence 34445556666676665 78889999999999977765421223456666666554322345778888999999999853
No 413
>PRK14440 acylphosphatase; Provisional
Probab=32.32 E-value=2.1e+02 Score=21.83 Aligned_cols=59 Identities=17% Similarity=0.025 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|.....+|.++++.=|+- +..+. +|-+.+.|+...++++++.+++|.-.+.|.-+-.
T Consensus 17 GFR~~v~~~A~~~gl~G~V~--N~~dG--~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i~~ 75 (90)
T PRK14440 17 GFRKFVQIHAIRLGIKGYAK--NLPDG--SVEVVAEGYEEALSKLLERIKQGPPAAEVEKVDF 75 (90)
T ss_pred CchHHHHHHHHHcCCEEEEE--ECCCC--CEEEEEEcCHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 46788888999999876543 22222 6888888888899999998888754456665533
No 414
>PRK14429 acylphosphatase; Provisional
Probab=32.21 E-value=2.1e+02 Score=21.75 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|.-...+|.++++.=|+... +--+|-+.+.|+...++++++.+++|...+.|.-+-.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~ 74 (90)
T PRK14429 16 GCRRATLTKARALGVTGYVTNC----EDGSVEILAQGSDPAVDNLIAWCEVGVPCTEVLRVTV 74 (90)
T ss_pred eeHHHHHHHHHHhCCEEEEEEC----CCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 3677788899999987665422 2246888889988889999999888743456665544
No 415
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=32.02 E-value=1.6e+02 Score=23.35 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=39.2
Q ss_pred eEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHh-CCCCeEEeCCCC-CchHHHHHHHhc--c
Q 024345 130 KVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER-HGIPYHYLCAKE-NEREEELLELVQ--N 204 (269)
Q Consensus 130 riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~-~gIP~~~~~~~~-~~~e~~l~~~l~--~ 204 (269)
+||.+++... .-+..+.+...+---.+++. .| . ...++-++ .||++..+ .-. ...+.++.+.++ +
T Consensus 1 ~~~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~--AT-~------gTa~~L~~~~Gi~v~~v-k~~~~~g~~~i~~~i~~g~ 70 (115)
T cd01422 1 RIALIAHDNKKEDLVEFVKQHQELLSRHRLV--AT-G------TTGLLIQEATGLTVNRM-KSGPLGGDQQIGALIAEGE 70 (115)
T ss_pred CEeEEecccchHHHHHHHHHHHHHhcCCEEE--Ee-c------hHHHHHHHhhCCcEEEE-ecCCCCchhHHHHHHHcCc
Confidence 3566666654 44445554432210035653 22 2 13566667 89999877 210 122356888887 7
Q ss_pred CCEEEEE
Q 024345 205 TDFLVLA 211 (269)
Q Consensus 205 ~Dlivla 211 (269)
+|+|+..
T Consensus 71 i~~VInt 77 (115)
T cd01422 71 IDAVIFF 77 (115)
T ss_pred eeEEEEc
Confidence 8887653
No 416
>PRK14445 acylphosphatase; Provisional
Probab=31.96 E-value=1.9e+02 Score=22.11 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeC
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn 164 (269)
-+|--...+|.++++.=|+... +.-+|-+.+.|+...++++++.+++|.-.+.|.-+-..
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~----~dG~Vei~~qG~~~~l~~f~~~l~~gP~~a~V~~i~~~ 77 (91)
T PRK14445 18 GFRMFIDRAASELNLSGWVRNL----PDGTVEIEAQGSSGMIDELIKQAERGPSRSSVTSIMVE 77 (91)
T ss_pred CChHHHHHHHhhCCCEEEEEEC----CCCeEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 3677788899999987765432 22468888888888999999998877544667665443
No 417
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=31.94 E-value=1.7e+02 Score=26.87 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=23.8
Q ss_pred eeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCC
Q 024345 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (269)
Q Consensus 129 ~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP 183 (269)
+||+|+|.|. |..+-..+.. .|. ..+|. +.++. ....+.+++.|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~--~g~-~~~V~--~~dr~----~~~~~~a~~~g~~ 53 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR--LGL-AGEIV--GADRS----AETRARARELGLG 53 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh--cCC-CcEEE--EEECC----HHHHHHHHhCCCC
Confidence 6899999998 4444332321 341 22443 33331 1234566677754
No 418
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=31.80 E-value=1.8e+02 Score=31.17 Aligned_cols=82 Identities=10% Similarity=-0.030 Sum_probs=50.4
Q ss_pred eEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (269)
Q Consensus 42 ~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~ 118 (269)
-..|++.|. +.+|+.++|-+.|+++|+|+.-+++... .. ...+.+. . . +.+.+.+.|++++.. . .
T Consensus 317 v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s---~~-sis~~i~--~-~-~~~~~~~~l~~~~~~-~--~- 384 (810)
T PRK09466 317 VCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD---RQ-LLQLAYT--S-E-VADSALKLLDDAALP-G--E- 384 (810)
T ss_pred EEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC---Cc-EEEEEEe--H-H-HHHHHHHHHHhhcCC-C--c-
Confidence 456778876 7889999999999999999999876422 11 2223333 2 1 344555555554311 1 1
Q ss_pred eeeecCCCCCeeEEEEEeCC
Q 024345 119 VVRVPDIDPKYKVAVLASKQ 138 (269)
Q Consensus 119 ~~~~~~~~~~~riav~~Sg~ 138 (269)
+ ......-+|++.|+|=
T Consensus 385 -i--~v~~~~a~VsvVG~gm 401 (810)
T PRK09466 385 -L--KLREGLALVALVGAGV 401 (810)
T ss_pred -E--EEeCCeEEEEEeCCCc
Confidence 1 1233556788888763
No 419
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=31.49 E-value=87 Score=26.16 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=33.5
Q ss_pred CeeEEEEEeCCchHHHHH------HHhhhc-C--CCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCC
Q 024345 128 KYKVAVLASKQEHCLVDF------LYGWQE-G--KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (269)
Q Consensus 128 ~~riav~~Sg~g~~l~~l------l~~~~~-g--~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (269)
+.-++|.+|++|.+.+.+ .+.+++ + .....++ +||++ +.+..++|..++.++..++.
T Consensus 73 ~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~v-aiT~~----~s~l~~~a~~~~~~~~~~~~ 138 (158)
T cd05015 73 ETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFV-AITDN----GSGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred ccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEE-EEcCC----ChHHHHHcCCCcceeeeCCC
Confidence 456788999998544332 111111 1 1223333 66765 44667778899999888773
No 420
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=31.46 E-value=1.2e+02 Score=27.42 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=34.3
Q ss_pred CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCC-CCCCC---hhHHHHHHhCCCCeEEeC
Q 024345 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNH-DRGPN---SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~-~~~~~---~~v~~~a~~~gIP~~~~~ 188 (269)
++|.+|+.||.- +++... +.+++ .+|.++--|- .| .. -.+.++|+++|||.+.++
T Consensus 2 ~~kavvl~SGG~DStt~l~~--a~~~~---~ev~alsfdYGQr-h~~Ele~A~~iak~lgv~~~iid 62 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAW--AKKEG---YEVHALTFDYGQR-HRKELEAAKELAKKLGVPHHIID 62 (222)
T ss_pred CceEEEEccCChhHHHHHHH--HHhcC---CEEEEEEeeCCCC-cHHHHHHHHHHHHHcCCCeEEec
Confidence 578888888863 332222 22244 5777665542 11 11 247888999999999987
No 421
>PRK14431 acylphosphatase; Provisional
Probab=31.40 E-value=2e+02 Score=22.02 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCC-CCceEEEEeeC
Q 024345 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGK-LPVEITCVISN 164 (269)
Q Consensus 102 L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~-l~~~i~~Visn 164 (269)
+|-.-..+|.++++.=|+... .+ .|-+.+.|+...+++++..+++|. ..++|.-+...
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~--~d---gVei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 75 (89)
T PRK14431 17 FRYFTQRIAMNYNIVGTVQNV--DD---YVEIYAQGDDADLERFIQGVIEGASPASNVTSYQLE 75 (89)
T ss_pred EhHHHHHHHhhcCCEEEEEEC--CC---cEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 566677889999998766533 22 399999999999999999999886 24677665443
No 422
>PRK06849 hypothetical protein; Provisional
Probab=31.36 E-value=3.2e+02 Score=25.90 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=21.7
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCC
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~ 165 (269)
.++||.|++.+...++ .+.....+. .+++.++-+++
T Consensus 3 ~~~~VLI~G~~~~~~l-~iar~l~~~--G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAAL-ELARLFHNA--GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHH-HHHHHHHHC--CCEEEEEeCCc
Confidence 5689999887775554 344444333 36776665543
No 423
>PRK08291 ectoine utilization protein EutC; Validated
Probab=31.29 E-value=1.2e+02 Score=28.46 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=39.4
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHh----CCCCeEEeCCCCCchHHHHHH
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLE 200 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~e~~l~~ 200 (269)
..++++++|+|.- ..+.++... . +.+-+ .|.|+. ...+.+++++ +|+++...+ ++.+
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~---~--~~~~V-~v~~R~---~~~a~~l~~~~~~~~g~~v~~~~--------d~~~ 193 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLV---R--PIREV-RVWARD---AAKAEAYAADLRAELGIPVTVAR--------DVHE 193 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc---C--CCCEE-EEEcCC---HHHHHHHHHHHhhccCceEEEeC--------CHHH
Confidence 3469999999974 333444321 2 22333 344552 3445666653 477765432 1224
Q ss_pred HhccCCEEEEEecc
Q 024345 201 LVQNTDFLVLARYM 214 (269)
Q Consensus 201 ~l~~~Dlivla~y~ 214 (269)
.+.++|+|+.+--.
T Consensus 194 al~~aDiVi~aT~s 207 (330)
T PRK08291 194 AVAGADIIVTTTPS 207 (330)
T ss_pred HHccCCEEEEeeCC
Confidence 45588999988543
No 424
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=31.26 E-value=94 Score=30.43 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=12.2
Q ss_pred CCeeEEEEEeCCc-hHH
Q 024345 127 PKYKVAVLASKQE-HCL 142 (269)
Q Consensus 127 ~~~riav~~Sg~g-~~l 142 (269)
++|||.++|||.- |-|
T Consensus 3 ~~~kvLviG~g~rehal 19 (426)
T PRK13789 3 VKLKVLLIGSGGRESAI 19 (426)
T ss_pred CCcEEEEECCCHHHHHH
Confidence 4589999999974 444
No 425
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=31.24 E-value=91 Score=28.98 Aligned_cols=53 Identities=17% Similarity=0.069 Sum_probs=39.1
Q ss_pred eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
..|+.++||+- ++.+.|.+...+|.+ .++++|=++- .-.+++.++|||+...+
T Consensus 43 g~ViGiGsGstv~~~v~~i~q~l~~~~l-~~vvgVPts~------~s~q~~~~~gi~l~~~d 97 (261)
T KOG3075|consen 43 GMVIGIGSGSTVVYAVDRIGQLLFDGDL-GNVVGVPTSF------RSAQLALEYGIPLSDLD 97 (261)
T ss_pred CeEEEecCccHHHHHHHHHHHHhcCCCc-CceEecccch------hhHHHHHhcCCccccCC
Confidence 46777888874 666777666667764 4677776664 34899999999999876
No 426
>PRK14422 acylphosphatase; Provisional
Probab=31.22 E-value=2.2e+02 Score=21.88 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 100 ~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
=-+|--...+|.++++.=|+-.. +.-+|-+.+.|+...++++++.+++|.-.+.|.-+-.
T Consensus 19 VGFR~~v~~~A~~~gl~G~V~N~----~dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~i~~ 78 (93)
T PRK14422 19 VGFRWWTRSRALELGLTGYAANL----ADGRVQVVAEGPRAACEKLLQLLRGDDTPGRVDKVVE 78 (93)
T ss_pred cCcHHHHHHHHHHcCCEEEEEEC----CCCCEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 34788888899999987665322 2235788889998899999999988754466665543
No 427
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=31.17 E-value=3e+02 Score=22.64 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=42.0
Q ss_pred eEEEEEeCCc-hHH-HHHHHhhhcCCCCceEEEEeeCCCCCCC---hhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345 130 KVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (269)
Q Consensus 130 riav~~Sg~g-~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~---~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~- 203 (269)
||+++.||.- +.+ -.++. +.| .++.++..+....+. ..+.+.|+++| |...++.+.......+.+..+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~--~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~a~~ 74 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAK--KEG---YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPARNLIFLSIAAAYAEA 74 (169)
T ss_pred CEEEEecCcHHHHHHHHHHH--HcC---CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCcCHHHHHHHHHHHHH
Confidence 6889999974 333 22332 233 356666555421111 35778899999 766665321111112222222
Q ss_pred -cCCEEEEEecc
Q 024345 204 -NTDFLVLARYM 214 (269)
Q Consensus 204 -~~Dlivla~y~ 214 (269)
+.|.|++....
T Consensus 75 ~g~~~i~~G~~~ 86 (169)
T cd01995 75 LGAEAIIIGVNA 86 (169)
T ss_pred CCCCEEEEeecc
Confidence 78888775443
No 428
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=31.02 E-value=2e+02 Score=28.08 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=36.2
Q ss_pred CCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCC---------C-hhHHHHHHhCCCCeEEeC
Q 024345 127 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGP---------N-SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 127 ~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~---------~-~~v~~~a~~~gIP~~~~~ 188 (269)
...|+.++|+|+. ..+.+++.. ++....++++++...++.. + ..+.+++++++|....+.
T Consensus 123 ~~rrvLIIGag~~~~~L~~l~~~--~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIA 193 (442)
T TIGR03013 123 LKRRILVLGTGPRAREIARLRRS--SDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIA 193 (442)
T ss_pred CCCcEEEEECCHHHHHHHHHHHh--CccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEE
Confidence 3468999988874 444444432 3445678999885432200 0 235667788888877665
No 429
>PRK14426 acylphosphatase; Provisional
Probab=30.98 E-value=2.3e+02 Score=21.70 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcC-CCCceEEEEee
Q 024345 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG-KLPVEITCVIS 163 (269)
Q Consensus 100 ~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g-~l~~~i~~Vis 163 (269)
=-+|.-...+|.++++.=|+...++ -.|-+.+.|+...++++++.+++| ...+.|.-+-.
T Consensus 17 VGFR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~g~P~~a~V~~i~~ 77 (92)
T PRK14426 17 VGFRYHTQHEALKLGLTGYAKNLDD----GSVEVVACGEEEQVEKLMEWLKEGGPRSARVDRVLT 77 (92)
T ss_pred cCchHHHHHHHHHhCCEEEEEECCC----CcEEEEEEeCHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 3478888899999999876543322 258888899888899999998887 33456665544
No 430
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=30.86 E-value=5.1e+02 Score=25.24 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=53.4
Q ss_pred CcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeecCCCCCeeE
Q 024345 52 EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKV 131 (269)
Q Consensus 52 rpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~~~~~~~ri 131 (269)
.+..+-.++++|.+.|+.+..+.+. . .....++++.++.++.+ ....+
T Consensus 311 ~~~~~~~la~~L~elGm~v~~~~~~-----------------~---~~~~~~~~~~~~l~~~~------------~~~~~ 358 (435)
T cd01974 311 DPDFLIGLTSFLLELGMEPVHVLTG-----------------N---GGKRFEKEMQALLDASP------------YGAGA 358 (435)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEeC-----------------C---CCHHHHHHHHHHHhhcC------------CCCCc
Confidence 3567889999999998766544331 0 12334555554433321 11134
Q ss_pred EEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 132 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 132 av~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
.|+.+++..-+++.++. . +.-++|.+. ....+|++.|||+..+.
T Consensus 359 ~v~~~~d~~e~~~~i~~---~----~pDliiG~s------~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 359 KVYPGKDLWHLRSLLFT---E----PVDLLIGNT------YGKYIARDTDIPLVRFG 402 (435)
T ss_pred EEEECCCHHHHHHHHhh---c----CCCEEEECc------cHHHHHHHhCCCEEEee
Confidence 45556655666665553 2 233467765 25789999999998664
No 431
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=30.83 E-value=5.6e+02 Score=25.67 Aligned_cols=50 Identities=16% Similarity=-0.038 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhh
Q 024345 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQ 150 (269)
Q Consensus 96 ~~~~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~ 150 (269)
+.+.+++.+.|+.+-.-.|.|+.. +. + .++|.|--.+++--|++.|+..+
T Consensus 305 G~~~e~i~~~l~~~~~v~GRmE~v---~~-~-~~~v~VDyAHnPd~le~~L~~~~ 354 (475)
T COG0769 305 GVDLEDILAGLETLKPVPGRMELV---NI-G-GKLVIVDYAHNPDGLEKALRAVR 354 (475)
T ss_pred CCCHHHHHHHHHhcCCCCCcceEe---cC-C-CCeEEEEeccChHHHHHHHHHHH
Confidence 466788888888888788887632 22 2 67888888888888888887765
No 432
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=30.75 E-value=1e+02 Score=25.66 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=25.0
Q ss_pred HHHHhhhcCCCCceEEEEeeCCCC-CC-----Ch-hHHHHHHhCCCCeEE
Q 024345 144 DFLYGWQEGKLPVEITCVISNHDR-GP-----NS-HVIRFLERHGIPYHY 186 (269)
Q Consensus 144 ~ll~~~~~g~l~~~i~~Visn~~~-~~-----~~-~v~~~a~~~gIP~~~ 186 (269)
++++.+++| +|.+||..++. .+ +. .+++.|.++|||+..
T Consensus 66 ~i~~~I~~g----~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T 111 (142)
T PRK05234 66 QIGALIAEG----KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVAT 111 (142)
T ss_pred hHHHHHHcC----ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEc
Confidence 344555567 46667665421 11 22 578889999999997
No 433
>PRK14437 acylphosphatase; Provisional
Probab=30.69 E-value=1.9e+02 Score=23.11 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEE
Q 024345 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCV 161 (269)
Q Consensus 100 ~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~V 161 (269)
=-+|-....+|.++++.=|+... +--+|-+.+.|+...++++++.+++|.-.++|.-+
T Consensus 36 VGFR~fv~~~A~~lgL~G~V~N~----~dG~Vei~~qG~~~~ie~f~~~L~~gP~~a~V~~i 93 (109)
T PRK14437 36 VFFRESVRKKAEELQLTGWVKNL----SHGDVELVACGERDSIMILTEWLWEGPPQAAVSNV 93 (109)
T ss_pred cCchHHHHHHHHHhCCeEEEEEC----CCCCEEEEEEECHHHHHHHHHHHHhCCCceEEEEE
Confidence 34788888899999998766433 22468888888888999999988877544666555
No 434
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=30.65 E-value=2.4e+02 Score=26.99 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhC-CCCeEEeC
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLC 188 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~-gIP~~~~~ 188 (269)
.+++|.|+|.|. |..+...|.. .| .++. ++... ...+.++.++. ++++.+-+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~--~~---~~v~-vid~~----~~~~~~~~~~~~~~~~i~gd 283 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEK--EG---YSVK-LIERD----PERAEELAEELPNTLVLHGD 283 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CC---CeEE-EEECC----HHHHHHHHHHCCCCeEEECC
Confidence 568999999987 3444444432 23 4553 33332 12344444443 77776654
No 435
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=30.57 E-value=1.2e+02 Score=27.48 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=34.1
Q ss_pred CeeEEEEEeCCchHHHHH-HHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhcc-C
Q 024345 128 KYKVAVLASKQEHCLVDF-LYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN-T 205 (269)
Q Consensus 128 ~~riav~~Sg~g~~l~~l-l~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~-~ 205 (269)
...|..++ ..+....+ ..+.+.|. .++|. |+=.+|....-...+...+.|||+.+++. ..+...+++ +
T Consensus 108 ~~~ILT~~--~S~~v~~~l~~a~~~~~-~~~V~-v~es~P~~eG~~~a~~L~~~gi~v~~i~d------~~~~~~m~~~v 177 (282)
T PF01008_consen 108 GDTILTHG--YSSTVERFLLSAKKKGK-KFRVI-VLESRPYNEGRLMAKELAEAGIPVTLIPD------SAVGYVMPRDV 177 (282)
T ss_dssp TEEEEEES----SHHHHHHHHHHHTTE-EEEEE-EE--TTTTHHHTHHHHHHHTT-EEEEE-G------GGHHHHHHCTE
T ss_pred CeEEEEeC--CchHHHHHHHHHHHcCC-eEEEE-EccCCcchhhhhHHHHhhhcceeEEEEec------hHHHHHHHHhC
Confidence 34444444 44444444 44455553 24443 33333221112234445567999999872 234455556 7
Q ss_pred CEEEEEe
Q 024345 206 DFLVLAR 212 (269)
Q Consensus 206 Dlivla~ 212 (269)
|.+++..
T Consensus 178 d~VliGa 184 (282)
T PF01008_consen 178 DKVLIGA 184 (282)
T ss_dssp SEEEEE-
T ss_pred CeeEEee
Confidence 7776643
No 436
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=30.56 E-value=1.3e+02 Score=23.96 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=26.9
Q ss_pred CChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEecce
Q 024345 169 PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ 215 (269)
Q Consensus 169 ~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y~~ 215 (269)
.+..+.+.++++||+.-....+ .-+++. +.++|+|++..=..
T Consensus 46 ~~~~a~~~l~~~gid~~~~~s~--~l~~~~---~~~~D~Ii~m~~~~ 87 (138)
T PF01451_consen 46 VDPRAIAVLKEHGIDISGHRSR--QLTEED---LDEADLIITMDDSH 87 (138)
T ss_dssp STHHHHHHHHHTTSSCTTSBBC--BGGHHH---HHHSSEEEESSHHH
T ss_pred ccchHHHHHHHhCCCcccceec--cccccc---cccCCEEEEccHHH
Confidence 5677999999999987532211 112222 33789999986543
No 437
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=30.53 E-value=1.3e+02 Score=24.23 Aligned_cols=47 Identities=19% Similarity=0.435 Sum_probs=28.5
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---hhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---~~v~~~a~~~gIP~~~~~ 188 (269)
+.+|.-.++.+ ++.|+ +..+.+-.|-+ |+ .++..+|++++||+.+..
T Consensus 27 l~~G~~~v~ka----ikkgk--a~LVilA~D~s--~~~~~~~i~~lc~~~~Ip~~~~~ 76 (117)
T TIGR03677 27 IKKGTNEVTKA----VERGI--AKLVVIAEDVE--PPEIVAHLPALCEEKGIPYVYVK 76 (117)
T ss_pred EeEcHHHHHHH----HHcCC--ccEEEEeCCCC--cHHHHHHHHHHHHHcCCCEEEeC
Confidence 55665455544 44564 44444444432 32 568889999999988865
No 438
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=30.51 E-value=81 Score=29.24 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=12.3
Q ss_pred HHHHhc--cCCEEEEEecc
Q 024345 198 LLELVQ--NTDFLVLARYM 214 (269)
Q Consensus 198 l~~~l~--~~Dlivla~y~ 214 (269)
+.+.++ +||++++.+|-
T Consensus 77 ~~~~l~~~kPdivi~~~~~ 95 (380)
T PRK00025 77 LKRRLLAEPPDVFIGIDAP 95 (380)
T ss_pred HHHHHHHcCCCEEEEeCCC
Confidence 444555 89999998863
No 439
>PRK08655 prephenate dehydrogenase; Provisional
Probab=30.48 E-value=1.5e+02 Score=29.18 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=24.4
Q ss_pred eeEEEEE-eCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCC
Q 024345 129 YKVAVLA-SKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (269)
Q Consensus 129 ~riav~~-Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP 183 (269)
|||+|+| +|. |..+-..+.. .| .+|. +.+++ ...+.+.|.+.|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~--~G---~~V~--v~~r~---~~~~~~~a~~~gv~ 47 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE--KG---FEVI--VTGRD---PKKGKEVAKELGVE 47 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH--CC---CEEE--EEECC---hHHHHHHHHHcCCe
Confidence 5899997 675 4544333332 34 3443 33332 22345777888874
No 440
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=30.43 E-value=49 Score=26.01 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=11.1
Q ss_pred hHHHHHHhCCCCeEE
Q 024345 172 HVIRFLERHGIPYHY 186 (269)
Q Consensus 172 ~v~~~a~~~gIP~~~ 186 (269)
.+++.|++||||+..
T Consensus 36 ~II~~Ake~~Vpi~e 50 (92)
T COG2257 36 KIIEKAKEHGVPIQE 50 (92)
T ss_pred HHHHHHHHcCCCccc
Confidence 366778888888775
No 441
>PRK14451 acylphosphatase; Provisional
Probab=30.38 E-value=2.1e+02 Score=21.84 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=42.9
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|--...+|.++++.=|+.... + -+|-+.+.|+...++++++.+++|...+.|.-+-.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~--d--G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 75 (89)
T PRK14451 17 WFRASAKKLAEQLMISGWARNLA--D--GRVEVFACGKEDKLEEFYTWLQKGPLNARVDVCTR 75 (89)
T ss_pred CchHHHHHHHHHhCCEEEEEECC--C--CCEEEEEEECHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 36777888999999887665332 2 35778888888889999998887754466655543
No 442
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=30.25 E-value=1.7e+02 Score=27.53 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=48.3
Q ss_pred CHHHHHHH-HHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHH
Q 024345 98 PREQMDED-FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI 174 (269)
Q Consensus 98 ~~~~L~e~-L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~ 174 (269)
....+|.+ ...++.+. + ......+++|+|+|.- ..++.+... . +.+-+. |.++. .....
T Consensus 106 ~lT~~RTaA~salaa~~-L--------a~~~~~~lgiiG~G~qA~~~l~al~~~---~--~~~~v~-V~~r~---~~~~~ 167 (325)
T TIGR02371 106 YITDMRTGAAGGVAAKY-L--------ARKDSSVLGIIGAGRQAWTQLEALSRV---F--DLEEVS-VYCRT---PSTRE 167 (325)
T ss_pred chhhHHHHHHHHHHHHH-h--------CCCCCCEEEEECCCHHHHHHHHHHHhc---C--CCCEEE-EECCC---HHHHH
Confidence 46777763 44444444 2 1124578999999983 344554431 1 223333 44552 23344
Q ss_pred HHHH---hCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEe
Q 024345 175 RFLE---RHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (269)
Q Consensus 175 ~~a~---~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~ 212 (269)
++++ ++|+++...+ + ..++++++|+|+++-
T Consensus 168 ~~~~~~~~~g~~v~~~~----~----~~eav~~aDiVitaT 200 (325)
T TIGR02371 168 KFALRASDYEVPVRAAT----D----PREAVEGCDILVTTT 200 (325)
T ss_pred HHHHHHHhhCCcEEEeC----C----HHHHhccCCEEEEec
Confidence 4443 5677766543 1 123456899999876
No 443
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=30.21 E-value=2.3e+02 Score=21.08 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=42.8
Q ss_pred EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (269)
Q Consensus 44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l 115 (269)
.++|.+++ .-+..|.+.|.++++.|.+.... .++.+.+...+.+. ....++..|..+.+-.+-
T Consensus 8 ~~~I~~p~--~~~g~v~~~l~~r~g~i~~~~~~---~~~~~~i~~~iP~~----~~~gf~~~Lr~~T~G~a~ 70 (89)
T PF00679_consen 8 SVEISVPE--EYLGKVISDLSKRRGEILSMDPI---GGDRVVIEAEIPVR----ELFGFRSELRSLTSGRAS 70 (89)
T ss_dssp EEEEEEEG--GGHHHHHHHHHHTT-EEEEEEEE---STTEEEEEEEEEGG----GHTTHHHHHHHHTTTS-E
T ss_pred EEEEEECH--HHHHHHHHHhcccccEEEechhh---hhhheeEEEEEChh----hhhhHHHHhhccCCCEEE
Confidence 34455553 35778888899999999999884 35676666655544 345788888888776654
No 444
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=30.15 E-value=2.2e+02 Score=25.89 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=13.6
Q ss_pred CeeEEEEEeCC-chHHHHHH
Q 024345 128 KYKVAVLASKQ-EHCLVDFL 146 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l~~ll 146 (269)
||||+|+|.|. |+.+-..+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L 20 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVL 20 (325)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 47999999998 55554444
No 445
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=30.08 E-value=2.6e+02 Score=27.50 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=37.1
Q ss_pred CeeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEe
Q 024345 128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (269)
Q Consensus 128 ~~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~ 187 (269)
++|+.++||.. |.+-.+++.+ ..-.++|+++..++ .-....+-|++++-.+..+
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~---~p~~f~vval~ag~---n~~~l~~q~~~f~P~~v~~ 56 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRR---NPDKFEVVALAAGK---NVELLAEQIREFKPKYVVI 56 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHh---CCCcEEEEEEecCC---cHHHHHHHHHHhCCceEEe
Confidence 47999999987 4444455654 22247899888876 2345788889998766543
No 446
>PRK06823 ornithine cyclodeaminase; Validated
Probab=30.01 E-value=1.7e+02 Score=27.59 Aligned_cols=74 Identities=5% Similarity=0.038 Sum_probs=41.3
Q ss_pred CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhcc
Q 024345 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (269)
Q Consensus 127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~ 204 (269)
...+++++|+|.- ..++.++.. . +.+-+. |.++.........+.+++.|+++...+ + .-+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v---~--~i~~v~-v~~r~~~~a~~~~~~~~~~~~~v~~~~----~----~~~av~~ 192 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV---T--DCRQLW-VWGRSETALEEYRQYAQALGFAVNTTL----D----AAEVAHA 192 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc---C--CCCEEE-EECCCHHHHHHHHHHHHhcCCcEEEEC----C----HHHHhcC
Confidence 4579999999984 566665542 1 233333 344421011123344455588877543 1 2244568
Q ss_pred CCEEEEEecc
Q 024345 205 TDFLVLARYM 214 (269)
Q Consensus 205 ~Dlivla~y~ 214 (269)
+|+|+++--.
T Consensus 193 ADIV~taT~s 202 (315)
T PRK06823 193 ANLIVTTTPS 202 (315)
T ss_pred CCEEEEecCC
Confidence 9999997643
No 447
>PRK14442 acylphosphatase; Provisional
Probab=29.88 E-value=2e+02 Score=22.03 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeC
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn 164 (269)
-+|--...+|.++++.=|+...++ -.|-+.+.|+...++++++.+++|.-.+.|..+-..
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14442 18 GFRQATREEADRLELDGWVRNLDD----GRVEVVWEGEEDRAKALERWLGRGPRHAEVSAVEVE 77 (91)
T ss_pred cccHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 367777888999999877653322 368888899888999999988877545677666443
No 448
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=29.64 E-value=3.8e+02 Score=24.52 Aligned_cols=74 Identities=15% Similarity=0.278 Sum_probs=39.0
Q ss_pred eeEEEEEeCCc----hHHHHHHHhhh-c-CCCCceEEEEeeCCCCCCC--hhHHHHHHhCCCCeEEeCCCCCchHHHHHH
Q 024345 129 YKVAVLASKQE----HCLVDFLYGWQ-E-GKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLE 200 (269)
Q Consensus 129 ~riav~~Sg~g----~~l~~ll~~~~-~-g~l~~~i~~Visn~~~~~~--~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~ 200 (269)
.++..|+.++| +.+..|..... . |. ..|..|=++..+ .. .....+++..|+|+.... ...++.+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~--~~V~li~~D~~r-~~a~eql~~~~~~~~~p~~~~~-----~~~~l~~ 265 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGN--KKVALITTDTYR-IGAVEQLKTYAKILGVPVKVAR-----DPKELRK 265 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCC--CeEEEEECCccc-hhHHHHHHHHHHHhCCceeccC-----CHHHHHH
Confidence 34444444444 45555554432 2 32 345444443322 11 235678889999997643 1234445
Q ss_pred Hhc---cCCEEEE
Q 024345 201 LVQ---NTDFLVL 210 (269)
Q Consensus 201 ~l~---~~Dlivl 210 (269)
.++ +.|+|++
T Consensus 266 ~l~~~~~~d~vli 278 (282)
T TIGR03499 266 ALDRLRDKDLILI 278 (282)
T ss_pred HHHHccCCCEEEE
Confidence 544 6898876
No 449
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=29.60 E-value=1.3e+02 Score=23.24 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHHhhhcCCCCceEEEEeeCCCCC----CChhHHHHHHhCCCCeEE
Q 024345 145 FLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHY 186 (269)
Q Consensus 145 ll~~~~~g~l~~~i~~Visn~~~~----~~~~v~~~a~~~gIP~~~ 186 (269)
+.+.+++| ++.+||..+... .+-..++.|-++|||+..
T Consensus 59 i~~~i~~~----~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 59 IVDLIKNG----EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHHcC----CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 33444456 455666543210 124588889999999996
No 450
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.56 E-value=1.1e+02 Score=27.88 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=32.5
Q ss_pred EEeCCchHHHHHHHhhh---cCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQ---EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~---~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
++=|.|++...+++.+. +++ .++.+|-|.. .-..+|+++|||+..++
T Consensus 24 iGlGTGST~~~fI~~Lg~~~~~e--~~i~~V~TS~------~t~~l~~~~GI~v~~l~ 73 (227)
T COG0120 24 IGLGTGSTAAYFIEALGRRVKGE--LDIGGVPTSF------QTEELARELGIPVSSLN 73 (227)
T ss_pred EEEcCcHHHHHHHHHHHHhhccC--ccEEEEeCCH------HHHHHHHHcCCeecCcc
Confidence 45566677777776653 222 3577777765 35789999999998766
No 451
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=29.55 E-value=31 Score=26.25 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=22.9
Q ss_pred HHHHhhhcCCCCceEEEEeeCCCCCC------ChhHHHHHHhCCCCeE
Q 024345 144 DFLYGWQEGKLPVEITCVISNHDRGP------NSHVIRFLERHGIPYH 185 (269)
Q Consensus 144 ~ll~~~~~g~l~~~i~~Visn~~~~~------~~~v~~~a~~~gIP~~ 185 (269)
++++.+++| +|.+||.++.+.. .-..++.|.++|||+.
T Consensus 51 ~i~~~i~~~----~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNG----KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTT----SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcC----CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 344555566 4667777764311 1236888999999986
No 452
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.29 E-value=1.8e+02 Score=26.11 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=35.1
Q ss_pred chHHHHHHHhhhcCCCCceEEEEeeCCCCC------CChhHHHHHHhCCCCeEEeCCCCC
Q 024345 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRG------PNSHVIRFLERHGIPYHYLCAKEN 192 (269)
Q Consensus 139 g~~l~~ll~~~~~g~l~~~i~~Visn~~~~------~~~~v~~~a~~~gIP~~~~~~~~~ 192 (269)
+-|+..-++-+++.....-...++.|+-+. +.-....+|+++|++++..+++.+
T Consensus 100 feni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~ 159 (207)
T KOG0078|consen 100 FENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTN 159 (207)
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCC
Confidence 356666666666554332334456776442 224588999999999999987754
No 453
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=29.27 E-value=1.5e+02 Score=28.43 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=22.0
Q ss_pred CeeEEEEEeCC-chHH-HHHHHhhhcCCCCceEEEEeeCC
Q 024345 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNH 165 (269)
Q Consensus 128 ~~riav~~Sg~-g~~l-~~ll~~~~~g~l~~~i~~Visn~ 165 (269)
++||++.|.|. |... +.+.. .+ ..++++|++.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~---~p--d~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQ---QP--DMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHh---CC--CcEEEEEEcCC
Confidence 58999999998 4332 33322 22 37899888866
No 454
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.20 E-value=5.7e+02 Score=25.28 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCH-HHHHH-HHHhhhhhhccceeeeeecCCCCCeeEE
Q 024345 55 IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPR-EQMDE-DFFKLSKMFNAMRSVVRVPDIDPKYKVA 132 (269)
Q Consensus 55 IVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~-~~L~e-~L~~la~el~l~~~~~~~~~~~~~~ria 132 (269)
.+.++-..|-+.++|..-....+..-.... ..-.++. +.+. ..+.. -.+++.+-++-....+ .....+.++.
T Consensus 29 ~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~---~~~~~~~-~~~~~~~~~~~v~~eL~~~l~~~~~~~--~~~~~~p~vi 102 (428)
T TIGR00959 29 ALREIRLALLEADVNLQVVKDFIKKVKEKA---LGQEVLK-SLSPGQQFIKIVHEELVAILGGENASL--NLAKKPPTVI 102 (428)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHh---ccccccc-cCCcHHHHHHHHHHHHHHHhCCCCccc--ccCCCCCEEE
Confidence 377788888888888755444322100000 0001111 2221 22322 2233344443211112 1222345677
Q ss_pred EEEeCCc----hHHHHHHHhhh--cCCCCceEEEEeeCCCCCCCh--hHHHHHHhCCCCeEEeCCCCCchH--HHHHHHh
Q 024345 133 VLASKQE----HCLVDFLYGWQ--EGKLPVEITCVISNHDRGPNS--HVIRFLERHGIPYHYLCAKENERE--EELLELV 202 (269)
Q Consensus 133 v~~Sg~g----~~l~~ll~~~~--~g~l~~~i~~Visn~~~~~~~--~v~~~a~~~gIP~~~~~~~~~~~e--~~l~~~l 202 (269)
+|+..+| +....|..... .| ..+..|-++.-+ +.+ ....+|++.|+|++.........+ .+.++.+
T Consensus 103 ~~vG~~GsGKTTtaakLA~~l~~~~g---~kV~lV~~D~~R-~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 103 LMVGLQGSGKTTTCGKLAYYLKKKQG---KKVLLVACDLYR-PAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCC---CeEEEEeccccc-hHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 7766665 44445544432 34 466666666432 222 245679999999987542111111 1233333
Q ss_pred c--cCCEEEEEeccee
Q 024345 203 Q--NTDFLVLARYMQV 216 (269)
Q Consensus 203 ~--~~Dlivla~y~~i 216 (269)
+ +.|+|++-.-++.
T Consensus 179 ~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 179 KENGFDVVIVDTAGRL 194 (428)
T ss_pred HhcCCCEEEEeCCCcc
Confidence 2 7899888666653
No 455
>PRK14452 acylphosphatase; Provisional
Probab=28.96 E-value=2.6e+02 Score=22.27 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeC
Q 024345 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (269)
Q Consensus 99 ~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn 164 (269)
-=-+|--...+|.++++.=|++..++ -+|-+.+.|+...++++++.+++|...+.|.-+-..
T Consensus 32 GVGFR~~v~~~A~~lgL~G~V~N~~d----GsVeI~~qG~~~~ve~F~~~l~~gP~~A~V~~v~~~ 93 (107)
T PRK14452 32 GVGFRASCCRRALDLGLSGWVRNLSD----GSVEVQAEGPPLALSELRAWCERGPPGARVKRVDPS 93 (107)
T ss_pred CcChhHHHHHHHHHhCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEE
Confidence 34478888899999999877653322 358888888888999998888787545677666443
No 456
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.93 E-value=2.9e+02 Score=26.76 Aligned_cols=81 Identities=10% Similarity=-0.036 Sum_probs=50.7
Q ss_pred EEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC----hhHHHHHHhCCCCeEEeC-CCCCchH---HHHHHHhc
Q 024345 132 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN----SHVIRFLERHGIPYHYLC-AKENERE---EELLELVQ 203 (269)
Q Consensus 132 av~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~----~~v~~~a~~~gIP~~~~~-~~~~~~e---~~l~~~l~ 203 (269)
.+||.|.-..+-+.++. .| .+..+|++++. ..+ ..+.+..++.||.+..++ ...+... ++..+..+
T Consensus 30 i~fG~g~~~~l~~~~~~--~g---~~~~lvv~~~~-~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r 103 (395)
T PRK15454 30 TLCGPGAVSSCGQQAQT--RG---LKHLFVMADSF-LHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLR 103 (395)
T ss_pred EEECcCHHHHHHHHHHh--cC---CCEEEEEcCcc-hhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHH
Confidence 34666654555555543 23 35667777642 111 346777889999998875 2222222 34445555
Q ss_pred --cCCEEEEEecceeee
Q 024345 204 --NTDFLVLARYMQVNR 218 (269)
Q Consensus 204 --~~Dlivla~y~~il~ 218 (269)
++|+||-.|=+..+.
T Consensus 104 ~~~~D~IiavGGGS~iD 120 (395)
T PRK15454 104 ESGCDGVIAFGGGSVLD 120 (395)
T ss_pred hcCcCEEEEeCChHHHH
Confidence 899999999999988
No 457
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=28.88 E-value=1.8e+02 Score=22.41 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=38.7
Q ss_pred EcCCCcChH----HHHHHHHHhCCCe-EeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 48 HCPDEVGIV----AKLSECIASRGGN-ILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 48 ~G~DrpGIV----a~VS~~La~~giN-I~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
.-.-+||+. .+|.+.|...|.+ +.++++ +-.|. ++++. .+.+...+.+.++|+++
T Consensus 7 ~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~-----gK~~e--l~ld~----~~~e~a~~~v~~mcekL 66 (83)
T COG1828 7 YVTLKPGVLDPEGETIEKALHRLGYNEVSDVRV-----GKVIE--LELDA----ESEEKAEEEVKEMCEKL 66 (83)
T ss_pred EEEeCCcccCchhHHHHHHHHHcCCcccceeee-----eeEEE--EEecC----cchhHHHHHHHHHHHHH
Confidence 333455555 5799999999988 999988 23333 44432 24678889999999987
No 458
>PRK14450 acylphosphatase; Provisional
Probab=28.57 E-value=2.5e+02 Score=21.33 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|.-...+|.++++.=|+...+ +. ..|-+.+.|+...++++++.+++|...+.|.-|-.
T Consensus 16 GFR~~v~~~A~~~~l~G~V~N~~--dG-~~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~ 75 (91)
T PRK14450 16 YFRDFTRTQATRLGLCGYAKNLA--NG-NEVEVVAEGDKDSLLEFLDLLRSGPPRAEVKEVET 75 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECC--CC-CEEEEEEEeCHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 36778888999999877654332 22 23777889988889999998887754466655543
No 459
>PRK09084 aspartate kinase III; Validated
Probab=28.50 E-value=2e+02 Score=28.38 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=37.6
Q ss_pred ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
.-..|+++|. ++||+.+++.+.|++. ||.=+++.. ..-. +.+-++ .++..+++..+-++|
T Consensus 383 ~va~IsvvG~gm~~~~gv~arif~aL~~~--nI~~I~qgs----Se~s--IS~vV~-----~~d~~~al~~LH~~f 445 (448)
T PRK09084 383 GLALVALIGNNLSKACGVAKRVFGVLEPF--NIRMICYGA----SSHN--LCFLVP-----ESDAEQVVQALHQNL 445 (448)
T ss_pred CeEEEEEECCCcccCcChHHHHHHHHHhC--CeEEEEEcC----CCCc--EEEEEc-----HHHHHHHHHHHHHHH
Confidence 4557999998 7999999999999864 555454421 1112 333333 244566666666555
No 460
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=28.33 E-value=6e+02 Score=25.25 Aligned_cols=152 Identities=12% Similarity=0.131 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCH-HHHHHHHH-hhhhhhccceeeeeecCCCCCeeE
Q 024345 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPR-EQMDEDFF-KLSKMFNAMRSVVRVPDIDPKYKV 131 (269)
Q Consensus 54 GIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~-~~L~e~L~-~la~el~l~~~~~~~~~~~~~~ri 131 (269)
..+.+|-..|-+.++|..-....+..-.... ..-.++. +.+. ..+...+. ++.+-++-....|.. ...+.++
T Consensus 29 ~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~---~~~~~~~-~~~~~~~v~~~v~~~L~~~l~~~~~~~~~--~~~~~~v 102 (429)
T TIGR01425 29 AMLKEICTALLESDVNIKLVRQLRENIKKAI---NLEEMAS-GLNKRKMIQHAVFKELCNLVDPGVEAFTP--KKGKQNV 102 (429)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---hcccccc-ccCHHHHHHHHHHHHHHHHhCCCCccccc--cCCCCeE
Confidence 3567778888888877655444322100000 0001122 2222 23333322 222223211112322 2233344
Q ss_pred EEEEeCCc----hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhH---HHHHHhCCCCeEEeCCCCCchH--HHHHHHh
Q 024345 132 AVLASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHV---IRFLERHGIPYHYLCAKENERE--EELLELV 202 (269)
Q Consensus 132 av~~Sg~g----~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v---~~~a~~~gIP~~~~~~~~~~~e--~~l~~~l 202 (269)
..|+..+| +....|....+.. ...|..|-++.-+ + +.+ ..+|++.|+|++.........+ .+.++.+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D~~R-~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCADTFR-A-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCcccc-h-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 44444444 4555554433322 2467766666533 2 323 4469999999986432111000 1122233
Q ss_pred c--cCCEEEEEecce
Q 024345 203 Q--NTDFLVLARYMQ 215 (269)
Q Consensus 203 ~--~~Dlivla~y~~ 215 (269)
+ +.|+|++--=++
T Consensus 179 ~~~~~DvViIDTaGr 193 (429)
T TIGR01425 179 KKENFDIIIVDTSGR 193 (429)
T ss_pred HhCCCCEEEEECCCC
Confidence 2 688888754443
No 461
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=28.22 E-value=3.2e+02 Score=27.12 Aligned_cols=85 Identities=13% Similarity=0.274 Sum_probs=48.9
Q ss_pred CCeeEEEEEeCCc----hHHHHHHHhhh--cCCCCceEEEEeeCCCC-CCChhHHHHHHhCCCCeEEeCCCCCchHHHHH
Q 024345 127 PKYKVAVLASKQE----HCLVDFLYGWQ--EGKLPVEITCVISNHDR-GPNSHVIRFLERHGIPYHYLCAKENEREEELL 199 (269)
Q Consensus 127 ~~~riav~~Sg~g----~~l~~ll~~~~--~g~l~~~i~~Visn~~~-~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~ 199 (269)
.+.||..|+.+.| +.|..|..+.. .+ ..+|..+=++.=| +.--....||+-.|+|++.+.... +. ++.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~--~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~-el-~~ai 276 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKK--KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPK-EL-AEAI 276 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc--CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHH-HH-HHHH
Confidence 3467777777776 78877765544 23 2345444444322 111246788999999999875210 11 2233
Q ss_pred HHhccCCEEEEEecce
Q 024345 200 ELVQNTDFLVLARYMQ 215 (269)
Q Consensus 200 ~~l~~~Dlivla~y~~ 215 (269)
..+++.|+|.+--=++
T Consensus 277 ~~l~~~d~ILVDTaGr 292 (407)
T COG1419 277 EALRDCDVILVDTAGR 292 (407)
T ss_pred HHhhcCCEEEEeCCCC
Confidence 4444789888754443
No 462
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=28.16 E-value=2.5e+02 Score=27.38 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=65.4
Q ss_pred cCCCCCeeEEEEEeCCc----hHHHHHHHhhhcCCCCceEEEEeeCCCCCC----------C------------------
Q 024345 123 PDIDPKYKVAVLASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRGP----------N------------------ 170 (269)
Q Consensus 123 ~~~~~~~riav~~Sg~g----~~l~~ll~~~~~g~l~~~i~~Visn~~~~~----------~------------------ 170 (269)
...++.++|+||+.|-. .....++++.+++- .+... +++|...| +
T Consensus 125 A~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~--~Nfsv-l~~hkl~PPa~~~ll~~~~~~idgfi~PGHVstI~G~ 201 (364)
T PRK15062 125 ARENPDKEVVFFAIGFETTAPATAATLLQAKAEGL--KNFSV-LSSHKLVPPAMRALLEDPELRIDGFIAPGHVSTIIGT 201 (364)
T ss_pred HHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCC--CCEEE-EEeccccHHHHHHHHcCCCCCccEEEecCEeEEEecc
Confidence 34567789999999976 34444555544442 33433 33332100 0
Q ss_pred hhHHHHHHhCCCCeEEeCCCCCchH--HHHHHHhc---cCCEEEEEecceeee--cccccccccccCCCccccCCCCCCC
Q 024345 171 SHVIRFLERHGIPYHYLCAKENERE--EELLELVQ---NTDFLVLARYMQVNR--IRLYVAQLFSCLVTEQLTVLNSSLG 243 (269)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~~~~~~~e--~~l~~~l~---~~Dlivla~y~~il~--l~~~~~~~iN~~~~~iHpSLLP~~r 243 (269)
.+-..+++++++|+.+-. +...| ..++.+++ +=+.-|-..|.|.++ =+.....+|| =|+|.-.+ .||
T Consensus 202 ~~y~~l~~~y~~P~VVaG--FEp~DiL~ai~~lv~q~~~g~~~v~N~Y~r~V~~eGN~~A~~~i~-~vFe~~d~---~WR 275 (364)
T PRK15062 202 EPYEFLAEEYGIPVVVAG--FEPLDILQSILMLVRQLEEGRAEVENQYTRVVKEEGNLKAQELIA-EVFEVRDA---FWR 275 (364)
T ss_pred chhHHHHHHcCCCeEEec--cCHHHHHHHHHHHHHHHHCCCceEEEccceeeCcccCHHHHHHHH-HHcCcCCC---ccc
Confidence 235677999999999843 11111 33444444 455566678999998 1122224555 34446666 389
Q ss_pred CCcHH
Q 024345 244 GINIS 248 (269)
Q Consensus 244 G~~p~ 248 (269)
|...+
T Consensus 276 GlG~I 280 (364)
T PRK15062 276 GLGVI 280 (364)
T ss_pred CCCcc
Confidence 86655
No 463
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=28.16 E-value=1.6e+02 Score=28.24 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=34.1
Q ss_pred eeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHH-hccCC
Q 024345 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL-VQNTD 206 (269)
Q Consensus 129 ~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~-l~~~D 206 (269)
|||.|+|.|. |..+-..|.. .| .++. ++... ...+.+..++.|+++..-+.. .+..+.+. ++++|
T Consensus 1 m~viIiG~G~ig~~~a~~L~~--~g---~~v~-vid~~----~~~~~~~~~~~~~~~~~gd~~---~~~~l~~~~~~~a~ 67 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSG--EN---NDVT-VIDTD----EERLRRLQDRLDVRTVVGNGS---SPDVLREAGAEDAD 67 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CC---CcEE-EEECC----HHHHHHHHhhcCEEEEEeCCC---CHHHHHHcCCCcCC
Confidence 5888998876 3333333321 23 4564 44332 123444444478888875421 12222222 23666
Q ss_pred EEEEE
Q 024345 207 FLVLA 211 (269)
Q Consensus 207 livla 211 (269)
.++++
T Consensus 68 ~vi~~ 72 (453)
T PRK09496 68 LLIAV 72 (453)
T ss_pred EEEEe
Confidence 66554
No 464
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=28.14 E-value=3.6e+02 Score=25.36 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=36.6
Q ss_pred CCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (269)
Q Consensus 125 ~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~- 203 (269)
..+++||.|+++|+.. ..++.+.++ +..++..+-.+ ++++...+|.. ++..+. .+.+++.++++
T Consensus 9 ~~~~~~ilIiG~g~~~--~~~~~a~~~--~G~~v~~~~~~----~~~~~~~~ad~----~~~~~~---~d~~~l~~~~~~ 73 (395)
T PRK09288 9 SPSATRVMLLGSGELG--KEVAIEAQR--LGVEVIAVDRY----ANAPAMQVAHR----SHVIDM---LDGDALRAVIER 73 (395)
T ss_pred CCCCCEEEEECCCHHH--HHHHHHHHH--CCCEEEEEeCC----CCCchHHhhhh----eEECCC---CCHHHHHHHHHH
Confidence 3456799999888521 222222111 23566544333 34455555543 222231 11346677776
Q ss_pred -cCCEEEE
Q 024345 204 -NTDFLVL 210 (269)
Q Consensus 204 -~~Dlivl 210 (269)
++|+|+.
T Consensus 74 ~~id~vi~ 81 (395)
T PRK09288 74 EKPDYIVP 81 (395)
T ss_pred hCCCEEEE
Confidence 7888775
No 465
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=28.05 E-value=3.6e+02 Score=23.00 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHH
Q 024345 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177 (269)
Q Consensus 99 ~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a 177 (269)
..++.+.+.+.+++.|. .+.++.+... .....+++...... +-++|..+.+ .+....+.+
T Consensus 14 ~~~~~~gi~~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~l~~~~----vdgiIi~~~~-~~~~~~~~l 74 (265)
T cd06299 14 FASLATAIQDAASAAGY--------------STIIGNSDENPETENRYLDNLLSQR----VDGIIVVPHE-QSAEQLEDL 74 (265)
T ss_pred HHHHHHHHHHHHHHcCC--------------EEEEEeCCCCHHHHHHHHHHHHhcC----CCEEEEcCCC-CChHHHHHH
Confidence 46677777777777763 2333333322 23334444433332 3334333222 234567888
Q ss_pred HhCCCCeEEeC
Q 024345 178 ERHGIPYHYLC 188 (269)
Q Consensus 178 ~~~gIP~~~~~ 188 (269)
++.|||+..++
T Consensus 75 ~~~~ipvV~~~ 85 (265)
T cd06299 75 LKRGIPVVFVD 85 (265)
T ss_pred HhCCCCEEEEe
Confidence 89999999887
No 466
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=28.05 E-value=2.6e+02 Score=26.98 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=56.4
Q ss_pred EEeCCCCCCHHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCC
Q 024345 90 FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDR 167 (269)
Q Consensus 90 v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~ 167 (269)
+.+|+ +.+.++..- -+|.-.-. -..++...-.+-.||+|.+-| | |-.-.+.++ .| ++|.++=.+.+
T Consensus 134 ~~iP~-~~d~~~aAp---llCaGiT~-y~alk~~~~~pG~~V~I~G~G-GlGh~avQ~Aka--~g---a~Via~~~~~~- 201 (339)
T COG1064 134 VKIPE-GLDLAEAAP---LLCAGITT-YRALKKANVKPGKWVAVVGAG-GLGHMAVQYAKA--MG---AEVIAITRSEE- 201 (339)
T ss_pred EECCC-CCChhhhhh---hhcCeeeE-eeehhhcCCCCCCEEEEECCc-HHHHHHHHHHHH--cC---CeEEEEeCChH-
Confidence 56886 666433222 22332211 113334455667899999999 5 444444443 34 78876655543
Q ss_pred CCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-cCCEEEEE
Q 024345 168 GPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVLA 211 (269)
Q Consensus 168 ~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-~~Dlivla 211 (269)
-+++|++.|--..+-.. +++..+.++ .+|+++..
T Consensus 202 -----K~e~a~~lGAd~~i~~~-----~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 202 -----KLELAKKLGADHVINSS-----DSDALEAVKEIADAIIDT 236 (339)
T ss_pred -----HHHHHHHhCCcEEEEcC-----CchhhHHhHhhCcEEEEC
Confidence 37899999988777432 223334444 47886653
No 467
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=28.04 E-value=4.1e+02 Score=24.63 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=48.6
Q ss_pred CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCC---eEEeCCCCCch-HHHHHHHh
Q 024345 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP---YHYLCAKENER-EEELLELV 202 (269)
Q Consensus 127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP---~~~~~~~~~~~-e~~l~~~l 202 (269)
.++||+|-...+...|++.....+.|. .++. ++.++ ..+.+.++++|+. +..++..+... -....+++
T Consensus 12 ~~~ri~~~~~~d~~vl~A~~~~~~~~~--~~~i-LvG~~-----~~I~~~~~~~~l~~~~ieIi~~~~~~~s~~~a~~lv 83 (294)
T TIGR02706 12 PMKTVAVAVAQDEPVLEAVKEAKEHGI--ARAI-LVGDE-----EKINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLV 83 (294)
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHHCCC--ceEE-EECCH-----HHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHH
Confidence 457999999777899998877665553 3443 24433 3477888888763 33444322110 02234556
Q ss_pred c--cCCEEEEEe
Q 024345 203 Q--NTDFLVLAR 212 (269)
Q Consensus 203 ~--~~Dlivla~ 212 (269)
+ ++|.+|.++
T Consensus 84 ~~G~aD~~vsg~ 95 (294)
T TIGR02706 84 STGKADMLMKGL 95 (294)
T ss_pred HCCCCCEEEeCC
Confidence 6 899999888
No 468
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.01 E-value=3.7e+02 Score=23.07 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHH
Q 024345 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176 (269)
Q Consensus 98 ~~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~ 176 (269)
-..++...+.+.+++.+. ++.++.+... ....+.++.+.... +-++|..+.. .+....+.
T Consensus 13 ~~~~~~~gi~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~~~----~dgiii~~~~-~~~~~~~~ 73 (265)
T cd06285 13 VMATMYEGIEEAAAERGY--------------STFVANTGDNPDAQRRAIEMLLDRR----VDGLILGDAR-SDDHFLDE 73 (265)
T ss_pred cHHHHHHHHHHHHHHCCC--------------EEEEEeCCCCHHHHHHHHHHHHHcC----CCEEEEecCC-CChHHHHH
Confidence 356677777777777653 4444444433 23334444433332 2233322211 23456677
Q ss_pred HHhCCCCeEEeCC
Q 024345 177 LERHGIPYHYLCA 189 (269)
Q Consensus 177 a~~~gIP~~~~~~ 189 (269)
+.+.|||+..++.
T Consensus 74 ~~~~~iPvv~~~~ 86 (265)
T cd06285 74 LTRRGVPFVLVLR 86 (265)
T ss_pred HHHcCCCEEEEcc
Confidence 8899999998873
No 469
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=27.98 E-value=1.8e+02 Score=27.70 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=35.0
Q ss_pred eEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-----------CChhHHHHHHhCCCCeEEeC
Q 024345 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-----------PNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 130 riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-----------~~~~v~~~a~~~gIP~~~~~ 188 (269)
||++..||.- +.+-.++.. .| .++.+|..+.-.. .-..+.++|+++|||++.++
T Consensus 1 kVlValSGGvDSsvla~lL~~--~g---~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd 67 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE--QG---YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVN 67 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH--cC---CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 6899999974 444444432 33 5677765543210 01357899999999999887
No 470
>PRK14428 acylphosphatase; Provisional
Probab=27.96 E-value=2.9e+02 Score=21.62 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=43.8
Q ss_pred HHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeC
Q 024345 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (269)
Q Consensus 102 L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn 164 (269)
+|--...+|.++++.=|+... +--+|-+.+.|+...++++++.+++|...+.|.-+...
T Consensus 23 FR~fv~~~A~~lgL~G~V~N~----~dGsVei~~qG~~~~i~~fi~~l~~gP~~a~V~~v~~~ 81 (97)
T PRK14428 23 FRYFTVTQARRLGVQGWVRNC----RDGSVELEAQGSSDAVQALVEQLAIGPRWSEVSHVAVH 81 (97)
T ss_pred chHHHHHHHHHcCCEEEEEEC----CCCEEEEEEEcCHHHHHHHHHHHhhCCCccEEEEEEEE
Confidence 677778889999998765422 22468888889889999999998877544677666443
No 471
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=27.76 E-value=4e+02 Score=25.71 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHhCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEecc
Q 024345 176 FLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM 214 (269)
Q Consensus 176 ~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y~ 214 (269)
+|+++|..+...+ ++.+.++++|+|..-.|.
T Consensus 225 ~~~~~g~~~~~~~--------d~~ea~~~aDvvyt~~w~ 255 (357)
T TIGR03316 225 NAAENGGKFNIVN--------SMDEAFKDADIVYPKSWA 255 (357)
T ss_pred HHHHcCCeEEEEc--------CHHHHhCCCCEEEECCee
Confidence 4567887766543 234566789999887654
No 472
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=27.61 E-value=1.1e+02 Score=28.51 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=45.6
Q ss_pred CHHHHHHHH-HhhhhhhccceeeeeecCCCCCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHH
Q 024345 98 PREQMDEDF-FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI 174 (269)
Q Consensus 98 ~~~~L~e~L-~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~ 174 (269)
....+|.+- ..++.++ + . .....+++|||+|.- ..++.+... .+ .+-+.|...++. ......
T Consensus 106 ~lT~~RTaA~sala~~~-L-------a-~~~~~~l~viGaG~QA~~~~~a~~~~--~~---i~~v~v~~r~~~-~~~~~~ 170 (313)
T PF02423_consen 106 WLTALRTAAVSALAARY-L-------A-RPDARTLGVIGAGVQARWHLRALAAV--RP---IKEVRVYSRSPE-RAEAFA 170 (313)
T ss_dssp HHHHHHHHHHHHHHHHH-H-------S--TT--EEEEE--SHHHHHHHHHHHHH--S-----SEEEEE-SSHH-HHHHHH
T ss_pred chhhhHHHHHHHHHHHH-h-------C-cCCCceEEEECCCHHHHHHHHHHHHh--CC---ceEEEEEccChh-HHHHHH
Confidence 366777643 3444443 2 1 123469999999984 556665543 12 333334433210 012234
Q ss_pred HHHHhCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEeccee
Q 024345 175 RFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQV 216 (269)
Q Consensus 175 ~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y~~i 216 (269)
+..+++|+++...+ + .-+.++++|+|+++--.+-
T Consensus 171 ~~~~~~~~~v~~~~----~----~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 171 ARLRDLGVPVVAVD----S----AEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp HHHHCCCTCEEEES----S----HHHHHTTSSEEEE----SS
T ss_pred Hhhccccccceecc----c----hhhhcccCCEEEEccCCCC
Confidence 44444788888754 1 2245668999999876554
No 473
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=27.53 E-value=1.9e+02 Score=24.02 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=33.9
Q ss_pred eEEEEEeCCch---HHHHHHHhhhcCCCCceEEEEeeCCCC----------CCChhHHHHHHhCCCCeEEeC
Q 024345 130 KVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDR----------GPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 130 riav~~Sg~g~---~l~~ll~~~~~g~l~~~i~~Visn~~~----------~~~~~v~~~a~~~gIP~~~~~ 188 (269)
|-+|..+|.|+ ++++|.-..+.+. ..+..||.|+.. ........+|+.+|++...+.
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~t~~~~~~--~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~ 129 (157)
T cd02001 60 RKVIVVDGDGSLLMNPGVLLTAGEFTP--LNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAP 129 (157)
T ss_pred CcEEEEECchHHHhcccHHHHHHHhcC--CCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcC
Confidence 34466666663 4455433322322 346677766642 013457899999999988764
No 474
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=27.51 E-value=1.5e+02 Score=27.61 Aligned_cols=104 Identities=8% Similarity=-0.008 Sum_probs=57.1
Q ss_pred CCCCeEEEEEEEEeCCCCCCHHHHHH-HHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc--hHHHHHHHhhhcCCCC
Q 024345 79 EKKNVFYSRSEFIFDPIKWPREQMDE-DFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLP 155 (269)
Q Consensus 79 ~~~g~F~m~~~v~~p~~~~~~~~L~e-~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g--~~l~~ll~~~~~g~l~ 155 (269)
+.+|...+.++ ......+|. +...++.++ + . ....+++++|+|.- ..++.+..- . +
T Consensus 83 ~~TG~p~Almd------~~~lT~~RTaA~salaa~~-l-------~--~da~~l~iiGaG~QA~~~~~a~~~v--~---~ 141 (301)
T PRK06407 83 VNNPELVAIFE------ANRLGQIRTGAVTAYATSI-L-------H--KNVENFTIIGSGFQAETQLEGMASV--Y---N 141 (301)
T ss_pred CCCCCEEEEEc------cchHHHHHHHHHHHHHHHH-h-------h--cCCcEEEEECCcHHHHHHHHHHHhc--C---C
Confidence 44666665552 234677777 444555553 2 1 14579999999984 555555542 1 2
Q ss_pred ceEEEEeeCCCCCCChhHHHH----HHhCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEecce
Q 024345 156 VEITCVISNHDRGPNSHVIRF----LERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ 215 (269)
Q Consensus 156 ~~i~~Visn~~~~~~~~v~~~----a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y~~ 215 (269)
.+=+. |.++. .....++ .++.|+++...+ + .-+.++++|+|+++--.+
T Consensus 142 i~~v~-v~~r~---~~~a~~f~~~~~~~~~~~v~~~~----~----~~eav~~aDIV~taT~s~ 193 (301)
T PRK06407 142 PKRIR-VYSRN---FDHARAFAERFSKEFGVDIRPVD----N----AEAALRDADTITSITNSD 193 (301)
T ss_pred CCEEE-EECCC---HHHHHHHHHHHHHhcCCcEEEeC----C----HHHHHhcCCEEEEecCCC
Confidence 32232 44442 2233333 333588877654 1 224455899999975543
No 475
>PRK07283 hypothetical protein; Provisional
Probab=27.42 E-value=1.1e+02 Score=23.83 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=28.4
Q ss_pred EEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 134 ~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
+++|...++.++ +.|+ +..+.+-+|-+..-..++.+.|+.++||++.+.
T Consensus 19 lv~G~~~v~~ai----k~gk--~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~ 67 (98)
T PRK07283 19 IISGEELVVKAI----QSGQ--AKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVF 67 (98)
T ss_pred eeEcHHHHHHHH----HcCC--ccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 666765665544 3463 344444444321011356788999999998764
No 476
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=27.35 E-value=3.8e+02 Score=27.19 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=90.3
Q ss_pred eEEEEEEcC-CCcChHHHHHHHHHhCCCeEeEeeeecc-------CCCCeEEEEE-------------------EEEeCC
Q 024345 42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVP-------EKKNVFYSRS-------------------EFIFDP 94 (269)
Q Consensus 42 ~~iItV~G~-DrpGIVa~VS~~La~~giNI~dl~~~~~-------~~~g~F~m~~-------------------~v~~p~ 94 (269)
+..|-++|. .-+|=+.+|.+.|.+.|+++.-.-+... .....+.+.+ -+.++
T Consensus 202 ~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~- 280 (513)
T TIGR01861 202 KHVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDID- 280 (513)
T ss_pred CCeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecC-
Confidence 455666664 6789999999999999999985433210 0111222111 01122
Q ss_pred CCCCHHHHHHHHHhhhhhhcccee------------eeee---cCCCCCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceE
Q 024345 95 IKWPREQMDEDFFKLSKMFNAMRS------------VVRV---PDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEI 158 (269)
Q Consensus 95 ~~~~~~~L~e~L~~la~el~l~~~------------~~~~---~~~~~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i 158 (269)
....++-.+-|.++++-+++.+. .-++ ...-.-+|+++++-+.. ..+..++. .++..++
T Consensus 281 -~~Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~~~~~~~~~l~----~ElGmev 355 (513)
T TIGR01861 281 -GFGFEPLAASLRKVAMFFGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGSKLWHWAHVIE----EEMGLKV 355 (513)
T ss_pred -cCCHHHHHHHHHHHHHHhCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHH----HhCCCEE
Confidence 34577777788888877774211 0001 12224578998887653 22222222 1345789
Q ss_pred EEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--cCCEEEEEecceeee
Q 024345 159 TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQVNR 218 (269)
Q Consensus 159 ~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~~Dlivla~y~~il~ 218 (269)
+++.+.... .....+..++.+--.+.++.. .+-+..+.++ +||+++.-++.+.+-
T Consensus 356 v~~~t~~~~--~~d~~~~~~~~~~~~~~i~D~---~~~e~~~~l~~~~~Dllig~s~~~~~A 412 (513)
T TIGR01861 356 VSVYSKFGH--QGDMEKGVARCGEGALAIDDP---NELEGLEAMEMLKPDIILTGKRPGEVS 412 (513)
T ss_pred EEEeccCCC--HHHHHHHHHhCCCCcEEecCC---CHHHHHHHHHhcCCCEEEecCccchhH
Confidence 888886421 111222333444334444411 1233444455 899999988888765
No 477
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.33 E-value=3.1e+02 Score=26.70 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=26.5
Q ss_pred CCchHHHHHHHhhhcCCCCceEEEEeeC-CCCCCChhH-HHHHHhCCCCeEEeC
Q 024345 137 KQEHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHV-IRFLERHGIPYHYLC 188 (269)
Q Consensus 137 g~g~~l~~ll~~~~~g~l~~~i~~Visn-~~~~~~~~v-~~~a~~~gIP~~~~~ 188 (269)
|.|+-+..+..+.++|. .+..+++- +|....+.. .....+.|||+.+++
T Consensus 184 g~gtal~~i~~a~~~gk---~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~ 234 (363)
T PRK05772 184 GLGTALAPVKLAKALGM---SVSVIAPETRPWLQGSRLTVYELMEEGIKVTLIT 234 (363)
T ss_pred ccccHHHHHHHHHHCCC---eEEEEECCCCccchhHHHHHHHHHHCCCCEEEEe
Confidence 34556666555555664 33333333 432223322 234567899999987
No 478
>PRK14425 acylphosphatase; Provisional
Probab=27.32 E-value=2.8e+02 Score=21.35 Aligned_cols=59 Identities=8% Similarity=0.052 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|-....+|.++++.=|+... +--.|-+.+.|+...++++++.+++|...+.|.-+-.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~----~dGsVei~~qG~~~~le~f~~~l~~gp~~a~V~~i~~ 78 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNE----SDGSVTALIAGPDSAISAMIERFRRGPPGASVSGVET 78 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEEC----CCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 3677788889999987665422 2346888888888889999999888754466665543
No 479
>COG2403 Predicted GTPase [General function prediction only]
Probab=27.31 E-value=1.4e+02 Score=29.50 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=46.5
Q ss_pred CCCCeeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEE----ee-CCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHH
Q 024345 125 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCV----IS-NHDRGPNSHVIRFLERHGIPYHYLCAKENEREEE 197 (269)
Q Consensus 125 ~~~~~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~V----is-n~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~ 197 (269)
...++||++++-|. +|+....++. .++ .+++.+ |- -..+.........-..+|||++... ++ ++
T Consensus 3 m~a~kRviiLgaggrdfhv~n~a~r~--~~~--yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k----~~-~~ 73 (449)
T COG2403 3 MKARKRVIILGAGGRDFHVFNVALRD--NPE--YEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEK----DY-DD 73 (449)
T ss_pred CCCceeEEEEeccCcccchhhHHhcc--CCc--ceEEEEEEEEecCCccccCCCCcccccccCCccccccc----cH-HH
Confidence 34678999999887 4888877763 222 343332 21 1111122235566678999998632 12 35
Q ss_pred HHHHhc--cCCEEEEE
Q 024345 198 LLELVQ--NTDFLVLA 211 (269)
Q Consensus 198 l~~~l~--~~Dlivla 211 (269)
+-+.++ .+|.+|++
T Consensus 74 lek~ire~~VD~~Vla 89 (449)
T COG2403 74 LEKIIREKDVDIVVLA 89 (449)
T ss_pred HHHHHHHcCCCeEEEE
Confidence 666666 78988886
No 480
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=27.27 E-value=1.2e+02 Score=27.61 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=25.5
Q ss_pred HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 143 ~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
+.|-++.+++.+ +|.+|-|.. ....+|+++|||+..++
T Consensus 38 ~~L~~~~~~~~l--~i~~VptS~------~t~~~a~~~Gipl~~l~ 75 (228)
T PRK13978 38 PQMAQLIKERGY--NITGVCTSN------KIAFLAKELGIKICEIN 75 (228)
T ss_pred HHHHHHhhccCc--cEEEEeCcH------HHHHHHHHcCCcEechh
Confidence 444455555554 477775554 35788999999988765
No 481
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=27.22 E-value=3.8e+02 Score=22.59 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=38.7
Q ss_pred CCeeEEEEEe-CC-c-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHh----CCCCeEEeCCCCCchHHHHH
Q 024345 127 PKYKVAVLAS-KQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELL 199 (269)
Q Consensus 127 ~~~riav~~S-g~-g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~e~~l~ 199 (269)
+.+|++++|. |. | ...+.+.+ .| .++.. .++. ...+.+++++ .+..+...+. ..++++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~---~g---~~V~l--~~R~---~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~ 92 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAR---EG---ARVVL--VGRD---LERAQKAADSLRARFGEGVGAVET---SDDAARA 92 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CC---CEEEE--EcCC---HHHHHHHHHHHHhhcCCcEEEeeC---CCHHHHH
Confidence 3468999985 54 3 23333332 34 35543 3442 2334444443 3565555432 1234556
Q ss_pred HHhccCCEEEEEecc
Q 024345 200 ELVQNTDFLVLARYM 214 (269)
Q Consensus 200 ~~l~~~Dlivla~y~ 214 (269)
+.++++|+|+.+.=.
T Consensus 93 ~~~~~~diVi~at~~ 107 (194)
T cd01078 93 AAIKGADVVFAAGAA 107 (194)
T ss_pred HHHhcCCEEEECCCC
Confidence 667789998887643
No 482
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=27.16 E-value=1.4e+02 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=23.7
Q ss_pred ceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC
Q 024345 156 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 156 ~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~ 188 (269)
..|.++.|-..+.....+.+.|+++|+|+..++
T Consensus 35 ~si~~lasi~~K~~E~~L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 35 ADVRVVATLDLKADEAGLLALCARHGWPLRAFS 67 (126)
T ss_pred HHhheeEehhhhcCCHHHHHHHHHhCCCeEEeC
Confidence 456666664333234678999999999999985
No 483
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=27.01 E-value=2.2e+02 Score=24.23 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=34.2
Q ss_pred EEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCchHHHHHHHhc-cCCEEEEEec
Q 024345 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENEREEELLELVQ-NTDFLVLARY 213 (269)
Q Consensus 158 i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~~e~~l~~~l~-~~Dlivla~y 213 (269)
|-.+|..-|+ ...+.++|+-.|||+.++-+. +.....++++-|+ ....++..|=
T Consensus 46 V~i~IASgDr--~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~vmVGn 101 (152)
T COG4087 46 VDIYIASGDR--KGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMVGN 101 (152)
T ss_pred heEEEecCCc--chHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEEEEecC
Confidence 3334555554 567999999999999987632 1112245666666 4577777664
No 484
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=26.88 E-value=91 Score=25.77 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=16.3
Q ss_pred hHHHHHHHhccCCEEEEEecc
Q 024345 194 REEELLELVQNTDFLVLARYM 214 (269)
Q Consensus 194 ~e~~l~~~l~~~Dlivla~y~ 214 (269)
.|..+++.++.-|++|..-|.
T Consensus 41 aD~~I~~~~~~gDiVITqDig 61 (130)
T PF02639_consen 41 ADFYIVNHAKPGDIVITQDIG 61 (130)
T ss_pred HHHHHHHcCCCCCEEEECCHH
Confidence 355677777789999998875
No 485
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=26.88 E-value=4e+02 Score=22.66 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=39.1
Q ss_pred CHHHHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHH
Q 024345 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176 (269)
Q Consensus 98 ~~~~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~ 176 (269)
-...+.+.+++.+++.|. ++.++.++.. ......++...... +-++|-...+ .+...++.
T Consensus 13 ~~~~~~~~i~~~a~~~g~--------------~~~~~~~~~~~~~~~~~~~~l~~~~----~dgiii~~~~-~~~~~l~~ 73 (267)
T cd06283 13 FSSLVLKGIEDVCRAHGY--------------QVLVCNSDNDPEKEKEYLESLLAYQ----VDGLIVNPTG-NNKELYQR 73 (267)
T ss_pred cHHHHHHHHHHHHHHcCC--------------EEEEEcCCCCHHHHHHHHHHHHHcC----cCEEEEeCCC-CChHHHHH
Confidence 357778888888777762 2333333322 33333444333332 2233322211 23345678
Q ss_pred HHhCCCCeEEeCC
Q 024345 177 LERHGIPYHYLCA 189 (269)
Q Consensus 177 a~~~gIP~~~~~~ 189 (269)
+++.|||+..++.
T Consensus 74 ~~~~~ipvV~~~~ 86 (267)
T cd06283 74 LAKNGKPVVLVDR 86 (267)
T ss_pred HhcCCCCEEEEcC
Confidence 8899999998873
No 486
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.86 E-value=2.5e+02 Score=26.38 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=39.9
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC-CC-CCchHHHHHHHhc
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AK-ENEREEELLELVQ 203 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~-~~-~~~~e~~l~~~l~ 203 (269)
+++||+|.|.|. |..+-..+- .+.+..+++++=.|.+. ....+.++. +..|+...+ -. ..++ +.++
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~---~~~~~~el~LiD~~~~~-~~g~a~Dl~--~~~~~~~~~~v~~~~dy-----~~~~ 70 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISIL---AKGLADELVLVDVVEDK-LKGEAMDLQ--HGSAFLKNPKIEADKDY-----SVTA 70 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hcCCCCEEEEEeCCccH-HHHHHHHHH--HhhccCCCCEEEECCCH-----HHhC
Confidence 467999999987 544333232 23455677666333321 223344443 333333211 00 0112 2356
Q ss_pred cCCEEEE-Eeccee
Q 024345 204 NTDFLVL-ARYMQV 216 (269)
Q Consensus 204 ~~Dlivl-a~y~~i 216 (269)
++|++|. ||-.+.
T Consensus 71 ~adivvitaG~~~k 84 (312)
T cd05293 71 NSKVVIVTAGARQN 84 (312)
T ss_pred CCCEEEECCCCCCC
Confidence 8999877 776443
No 487
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=5.5e+02 Score=26.44 Aligned_cols=114 Identities=10% Similarity=0.217 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhhh---hhccceeeeeecCCCCCeeEEEEEeCC---chHHHHHHHhhhcCCCCceEEEEeeCCCCC----
Q 024345 99 REQMDEDFFKLSK---MFNAMRSVVRVPDIDPKYKVAVLASKQ---EHCLVDFLYGWQEGKLPVEITCVISNHDRG---- 168 (269)
Q Consensus 99 ~~~L~e~L~~la~---el~l~~~~~~~~~~~~~~riav~~Sg~---g~~l~~ll~~~~~g~l~~~i~~Visn~~~~---- 168 (269)
.+.|+++|-.+-. ..++.+-..+.....+|+=|.|+|--. .+||..|-.=..+. ++.|..+.|+.=|.
T Consensus 346 k~Al~daLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqN--kfrVLIAACDTFRsGAvE 423 (587)
T KOG0781|consen 346 KEALRDALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQN--KFRVLIAACDTFRSGAVE 423 (587)
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhC--CceEEEEeccchhhhHHH
Confidence 4567777766641 233222122223344667676666543 38998876544444 36777777775440
Q ss_pred -------------------------CC-h----hHHHHHHhCCCCeEEeCCCCCc-hH----HHHHHHhc--cCCEEEEE
Q 024345 169 -------------------------PN-S----HVIRFLERHGIPYHYLCAKENE-RE----EELLELVQ--NTDFLVLA 211 (269)
Q Consensus 169 -------------------------~~-~----~v~~~a~~~gIP~~~~~~~~~~-~e----~~l~~~l~--~~Dlivla 211 (269)
++ + -++++|++.|--+..++..... .+ ..+.++++ .||+|+..
T Consensus 424 QLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~v 503 (587)
T KOG0781|consen 424 QLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFV 503 (587)
T ss_pred HHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEe
Confidence 11 1 2577788888888888744311 11 23344444 78888877
Q ss_pred ecc
Q 024345 212 RYM 214 (269)
Q Consensus 212 ~y~ 214 (269)
|=-
T Consensus 504 gea 506 (587)
T KOG0781|consen 504 GEA 506 (587)
T ss_pred hhh
Confidence 653
No 488
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=26.75 E-value=3.7e+02 Score=22.91 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=12.1
Q ss_pred cCCEEEEEecceeee
Q 024345 204 NTDFLVLARYMQVNR 218 (269)
Q Consensus 204 ~~Dlivla~y~~il~ 218 (269)
+||+|++-|=+--++
T Consensus 92 rPdvii~nGpg~~vp 106 (170)
T PF08660_consen 92 RPDVIISNGPGTCVP 106 (170)
T ss_pred CCCEEEEcCCceeeH
Confidence 899999988666655
No 489
>PRK05783 hypothetical protein; Provisional
Probab=26.59 E-value=3e+02 Score=21.14 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=40.3
Q ss_pred EEEEEEcCCCcChH----HHHHHHHHhCCC-eEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345 43 GIHVFHCPDEVGIV----AKLSECIASRGG-NILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (269)
Q Consensus 43 ~iItV~G~DrpGIV----a~VS~~La~~gi-NI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el 113 (269)
+.+.|.-.-||||. .+|.+.|.++|. ++.++++ |.+. .++++.+ +.++.++..+++|+++
T Consensus 3 ~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRv------GK~i-el~l~~~----~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 3 YYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRA------GKYL-VFKIEAN----SPEEAKELALKIAREG 67 (84)
T ss_pred EEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEe------eEEE-EEEEcCC----CHHHHHHHHHHHHHhc
Confidence 44455555677776 478889988865 3666665 4433 3444422 5678899999999998
No 490
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.59 E-value=2.1e+02 Score=24.91 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=38.6
Q ss_pred CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-c
Q 024345 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-N 204 (269)
Q Consensus 127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-~ 204 (269)
..++|+|.|.|+ |..+-..|.. .| ++|+ +++++ ...+.++++.+|..+. +. ++ ++. +
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~--~G---~~Vv--v~D~~---~~~~~~~~~~~g~~~v--~~------~~---l~~~~ 85 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLE--EG---AKLI--VADIN---EEAVARAAELFGATVV--AP------EE---IYSVD 85 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CC---CEEE--EEcCC---HHHHHHHHHHcCCEEE--cc------hh---hcccc
Confidence 447899999987 4444333322 34 5665 55552 2345566666664322 21 11 222 6
Q ss_pred CCEEEEEecceeee
Q 024345 205 TDFLVLARYMQVNR 218 (269)
Q Consensus 205 ~Dlivla~y~~il~ 218 (269)
+|+++.+.-..++.
T Consensus 86 ~Dv~vp~A~~~~I~ 99 (200)
T cd01075 86 ADVFAPCALGGVIN 99 (200)
T ss_pred CCEEEecccccccC
Confidence 78888665555555
No 491
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=26.58 E-value=1.1e+02 Score=24.67 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=43.3
Q ss_pred eeEEEEEeCCc---hHHHHHHHhhhcCCCCceE--EEEeeCC-CCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEI--TCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (269)
Q Consensus 129 ~riav~~Sg~g---~~l~~ll~~~~~g~l~~~i--~~Visn~-~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l 202 (269)
+||.|+.+++- .-.++++.....+ ...++ .++...+ ....+..+.+..+++||+..-...+. -++ ..+
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~-~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s~h~s~~--l~~---~~~ 74 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPK-LDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISGHRARQ--LTE---DDF 74 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhh-CCEEEECCCCCCccCCCCCCHHHHHHHHHcCCCcccCeeee--CCH---HHH
Confidence 47888887774 3446666654332 12332 2222210 01245668899999999874322111 111 123
Q ss_pred ccCCEEEEEecce
Q 024345 203 QNTDFLVLARYMQ 215 (269)
Q Consensus 203 ~~~Dlivla~y~~ 215 (269)
+++|+||...-..
T Consensus 75 ~~aDlIi~m~~~~ 87 (141)
T cd00115 75 DEFDLIITMDESN 87 (141)
T ss_pred HhCCEEEEECHHH
Confidence 4789999875543
No 492
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=26.57 E-value=3e+02 Score=21.31 Aligned_cols=42 Identities=5% Similarity=0.114 Sum_probs=30.1
Q ss_pred CcChHHHHHHHHHhCCCeEeEeeeecc---------CCCCeEEEEEEEEeCC
Q 024345 52 EVGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDP 94 (269)
Q Consensus 52 rpGIVa~VS~~La~~giNI~dl~~~~~---------~~~g~F~m~~~v~~p~ 94 (269)
...++..+.+.+.+.|+.|.+.+.... ...|.|. .+.+..++
T Consensus 23 ~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv-~~~f~~~~ 73 (97)
T CHL00123 23 LLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYI-QMNYSGNG 73 (97)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEE-EEEEEECH
Confidence 567899999999999999999876531 1245444 56666653
No 493
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.53 E-value=3e+02 Score=27.63 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=47.8
Q ss_pred EEEEEeCC-c----hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC-CCCCchHHHHHHHhc-
Q 024345 131 VAVLASKQ-E----HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQ- 203 (269)
Q Consensus 131 iav~~Sg~-g----~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~-~~~~~~e~~l~~~l~- 203 (269)
=+++++|+ | +-|..+..++.+.. -++.||.-+ ....++-+|+|.|+|..-+. ..+.. -+++.+.++
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEE--S~~QiklRA~RL~~~~~~l~l~aEt~-~e~I~~~l~~ 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEE--SLQQIKLRADRLGLPTNNLYLLAETN-LEDIIAELEQ 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCc--CHHHHHHHHHHhCCCccceEEehhcC-HHHHHHHHHh
Confidence 35677776 3 44555555554432 345666653 34568899999998753322 12222 346777776
Q ss_pred -cCCEEEEEeccee
Q 024345 204 -NTDFLVLARYMQV 216 (269)
Q Consensus 204 -~~Dlivla~y~~i 216 (269)
+||++|.-.---+
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 8999998654333
No 494
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=26.51 E-value=48 Score=24.56 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=32.1
Q ss_pred eEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCCEEEEEe
Q 024345 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (269)
Q Consensus 157 ~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~ 212 (269)
.+.++|+..-. +.++..-+|+++|||+..-.. ...+.+++=|.+.+-+
T Consensus 30 ~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~-------~~~~~i~~g~~v~lDg 77 (80)
T PF00391_consen 30 RVAGIVTEEGG-PTSHAAILARELGIPAIVGVG-------DATEAIKDGDWVTLDG 77 (80)
T ss_dssp TSSEEEESSSS-TTSHHHHHHHHTT-EEEESTT-------THHHHSCTTEEEEEET
T ss_pred heEEEEEEcCC-ccchHHHHHHHcCCCEEEeec-------cHhhccCCCCEEEEEC
Confidence 36678887643 779999999999999998431 1334455556666544
No 495
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=26.46 E-value=2.5e+02 Score=26.79 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=41.1
Q ss_pred eEEEEEeCCc-hHHHHHHHhhhcCC-----CCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC-CCC--C-chHHHHH
Q 024345 130 KVAVLASKQE-HCLVDFLYGWQEGK-----LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE--N-EREEELL 199 (269)
Q Consensus 130 riav~~Sg~g-~~l~~ll~~~~~g~-----l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~-~~~--~-~~e~~l~ 199 (269)
||+|+|+|.+ +.|-.++.. +|. ..++|.+..-+.+. .+....+.-.+......+++ .+. + ....++-
T Consensus 1 kI~VIGaG~wGtALA~~la~--ng~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE--NARALPELFEESVRMWVFEEEI-EGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLV 77 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCcccccCCceEEEEEecccc-CCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHH
Confidence 6899999995 777666642 331 12456554432110 02223333222222223222 110 0 1112344
Q ss_pred HHhccCCEEEEEecceeee
Q 024345 200 ELVQNTDFLVLARYMQVNR 218 (269)
Q Consensus 200 ~~l~~~Dlivla~y~~il~ 218 (269)
+.++++|++++|==.+.++
T Consensus 78 eal~~ADiIIlAVPs~~i~ 96 (342)
T TIGR03376 78 EAAKGADILVFVIPHQFLE 96 (342)
T ss_pred HHHhcCCEEEEECChHHHH
Confidence 5666899999985444443
No 496
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.40 E-value=5.1e+02 Score=23.73 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=31.4
Q ss_pred CCeeEEEEEeCCc----hHHHHHHHhhhcCCCCceEEEEeeCCCCC-CChhHHHHHHhCCCCeEEeC
Q 024345 127 PKYKVAVLASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLC 188 (269)
Q Consensus 127 ~~~riav~~Sg~g----~~l~~ll~~~~~g~l~~~i~~Visn~~~~-~~~~v~~~a~~~gIP~~~~~ 188 (269)
.+.++..|...+| +....|....... ...|..+-++.-+. +......++++.|+|++...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~ 134 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQK 134 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCC
Confidence 3345555555555 4455554433222 24566555553221 01235668899999987543
No 497
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=26.39 E-value=1.2e+02 Score=29.98 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=29.4
Q ss_pred hHHHHHHHhhhcCCCCceEEEEeeCCCCC-CC------hhHHHHHHhCCCCeEE
Q 024345 140 HCLVDFLYGWQEGKLPVEITCVISNHDRG-PN------SHVIRFLERHGIPYHY 186 (269)
Q Consensus 140 ~~l~~ll~~~~~g~l~~~i~~Visn~~~~-~~------~~v~~~a~~~gIP~~~ 186 (269)
.-|+.+++..-....| -|++.|||+.-+ .+ -.+.++|.++|||+..
T Consensus 172 ~kLe~lidevG~~nvp-~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~ 224 (471)
T COG3033 172 EKLERLIDEVGADNVP-YIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVM 224 (471)
T ss_pred HHHHHHHHHhCcccCc-EEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEe
Confidence 3466666643233333 478888887431 11 1378999999999986
No 498
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=26.37 E-value=3.5e+02 Score=25.91 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=49.1
Q ss_pred EEEeCCchHHHHHHHhhhc-CCCCceEEEEeeCCCCCCC----hhHHHHHHhCCCCeEEeC-CCCCchH---HHHHHHhc
Q 024345 133 VLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPN----SHVIRFLERHGIPYHYLC-AKENERE---EELLELVQ 203 (269)
Q Consensus 133 v~~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~~~----~~v~~~a~~~gIP~~~~~-~~~~~~e---~~l~~~l~ 203 (269)
+|+.|....+.+++..... | .+=++||+++.-... ..+.+..++.|+.+..++ ...+... +++.+.++
T Consensus 5 ~fG~g~~~~l~~~l~~~~~~g---~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~ 81 (383)
T cd08186 5 YFGVGAIEKIGEILKDLKSKG---ISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGR 81 (383)
T ss_pred EECcCHHHHHHHHHHHhcccC---CCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 4565554555555553211 2 234567776521111 246677788899888876 2222222 34455555
Q ss_pred --cCCEEEEEecceeee
Q 024345 204 --NTDFLVLARYMQVNR 218 (269)
Q Consensus 204 --~~Dlivla~y~~il~ 218 (269)
++|+||-.|=+..+.
T Consensus 82 ~~~~D~IIaiGGGS~iD 98 (383)
T cd08186 82 EFGAQAVIAIGGGSPID 98 (383)
T ss_pred HcCCCEEEEeCCccHHH
Confidence 799999999998888
No 499
>PLN00203 glutamyl-tRNA reductase
Probab=26.34 E-value=2.1e+02 Score=29.12 Aligned_cols=41 Identities=12% Similarity=-0.062 Sum_probs=26.8
Q ss_pred CCCCcceEEEEEEcCCCcChHHHHHHHHHh-CCCeEeEeeee
Q 024345 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIAS-RGGNILAADVF 76 (269)
Q Consensus 36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~-~giNI~dl~~~ 76 (269)
.-++.++.-|-+.+.|-..-+..+.++|++ .|++..++.++
T Consensus 128 iLSTCNR~EiY~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~ 169 (519)
T PLN00203 128 VLSTCNRMEIYVVALSWHRGVKEVTEWMSKTSGIPVSELRQH 169 (519)
T ss_pred EEeccCeEEEEEEecCcchhHHHHHHHHHHhcCCCHHHHhhh
Confidence 455666777777777655457788888886 45666555554
No 500
>PRK14432 acylphosphatase; Provisional
Probab=25.98 E-value=3.1e+02 Score=21.12 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEe-CCchHHHHHHHhhhcCCCCceEEEEee
Q 024345 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS-KQEHCLVDFLYGWQEGKLPVEITCVIS 163 (269)
Q Consensus 101 ~L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~S-g~g~~l~~ll~~~~~g~l~~~i~~Vis 163 (269)
-+|.-...+|.++++.=|+...+ + -.|-+.+. |+...++++++.+++|.-.+.|.-+-.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~--d--G~Vei~~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~ 75 (93)
T PRK14432 16 GFRFFTEQIANNMKLKGFVKNLN--D--GRVEIVAFFNTKEQMKKFEKLLKNGNKYSNIENIEK 75 (93)
T ss_pred eehHHHHHHHHHhCCEEEEEECC--C--CCEEEEEEECCHHHHHHHHHHHHhCCCccEEEEEEE
Confidence 36777888999999887765332 2 35777776 888889999998888843466666543
Done!