BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024346
         (269 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
 pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
          Length = 589

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 66  PANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHP 100
           P NNWK +F  S++T  F+  T     RLF S  P
Sbjct: 151 PPNNWKSYFGGSAWT--FDEKTQEFYLRLFCSTQP 183


>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
 pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
 pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
          Length = 589

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 66  PANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHP 100
           P NNWK +F  S++T  F+  T     RLF S  P
Sbjct: 151 PPNNWKSYFGGSAWT--FDEKTQEFYLRLFCSTQP 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,324,392
Number of Sequences: 62578
Number of extensions: 340173
Number of successful extensions: 866
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 12
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)