BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024346
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54TS4|YIPF1_DICDI Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3
SV=1
Length = 347
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 120/218 (55%), Gaps = 13/218 (5%)
Query: 55 LGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPD 114
L ++ +G E++ F+ + Y FNVDT V RL S+ P+ FF+ I NPD
Sbjct: 112 LNTNEDGTEKK-----YSFYEVPYYRFLFNVDTKEVGLRLIRSMLPIKFSFFNLIRENPD 166
Query: 115 LYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLA 174
LYG W+ T+LVF++A N Y +++ SW D+ + +A T+YGY+ V+PL
Sbjct: 167 LYGPFWVLTSLVFIVAVTSNLNEYF---HSSDHKSWEVDIQKIVYSAITIYGYSFVIPLI 223
Query: 175 YYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAF 234
+ + ++M L+ C++GY+LFIFV S L +IP++L++WII+ +A S F+
Sbjct: 224 LWGIFKWMNLGLRLLDMLCIYGYTLFIFVPASILCVIPLQLVQWIIVAIASIVSGLFLVT 283
Query: 235 N----LKSYMEGNDLTVLVVASFCLQMALAIFIKVWFF 268
N LK L + V L + LA+ +K++FF
Sbjct: 284 NIFTPLKEDFTKRGLIICAVIG-ALHIGLALVLKLYFF 320
>sp|Q5RBL0|YIPF1_PONAB Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1
Length = 306
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 44 NGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLFSSLHPL 101
G G + LG+ + A K F++ Y +F+VDT V +R+ SL P+
Sbjct: 45 RGSGREEDDELLGNDDSDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPI 104
Query: 102 SGDFFSK--IDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNV 159
G F + I +NPDLYG WI TLVF +A GN + +L+ + + + V++
Sbjct: 105 PGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYRYVPEFRKVSI 163
Query: 160 AACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSFLLLIPI 213
AA T+Y YA +VPLA + L + S S S + C++GYSLFI++ T+ L +IP
Sbjct: 164 AATTIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQ 223
Query: 214 ELLRWIIILLAGTTSSCFVAFNL-KSYMEGNDLTVL--VVASFCLQMALAIFIKVWFF 268
+ +RWI++++A S +A + E N L +V L M L++ +FF
Sbjct: 224 KAVRWILVMIALGISGSVLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFF 281
>sp|Q9Y548|YIPF1_HUMAN Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=2 SV=1
Length = 306
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 125/252 (49%), Gaps = 15/252 (5%)
Query: 31 EAPEATMQTFPPG-NGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDT 87
E P T + P G G + LG+ + A K F++ Y +F+VDT
Sbjct: 31 EDPGETPKHQPGSPRGSGREEDDELLGNDDSDKTELLAGQKKSSPFWTFEYYQTFFDVDT 90
Query: 88 DIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTN 145
V +R+ SL P+ G F + I +NPDLYG WI TLVF +A GN + +L+
Sbjct: 91 YQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGE 149
Query: 146 SSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSL 199
+ + + V++AA +Y YA +VPLA + L + S S S + C++GYSL
Sbjct: 150 KTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSL 209
Query: 200 FIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL-KSYMEGNDLTVL--VVASFCLQ 256
FI++ T+ L +IP + +RWI++++A S +A + E N L +V L
Sbjct: 210 FIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRVALATIVTIVLLH 269
Query: 257 MALAIFIKVWFF 268
M L++ +FF
Sbjct: 270 MLLSVGCLAYFF 281
>sp|Q91VU1|YIPF1_MOUSE Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1
Length = 306
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 15/244 (6%)
Query: 38 QTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLF 95
Q PPG+ G + LG++ + A + F++ Y +F+VDT V +R+
Sbjct: 40 QPRPPGSVGREE-DEELLGNNDSDETELLAGQKRSSPFWTFEYYQTFFDVDTYQVFDRIK 98
Query: 96 SSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFD 153
SL P+ G F + I +NPDLYG WI TLVF +A GN + +L+ + + +
Sbjct: 99 GSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPE 157
Query: 154 VSFVNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSF 207
V++AA +Y YA +VPLA + L + S S S + C++GYSLFI++ T+
Sbjct: 158 FQKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMSMVSYSFLEIVCVYGYSLFIYIPTAV 217
Query: 208 LLLIPIELLRWIIILLA-GTTSSCFVAFNLKSYMEGNDLTVL--VVASFCLQMALAIFIK 264
L +IP ++RW+++++A G + S V + E N L +V L + L++
Sbjct: 218 LWIIPQRVVRWVLVMIALGVSGSVLVMTFWPAVREDNRRVALATIVTIVLLHVLLSVGCL 277
Query: 265 VWFF 268
+FF
Sbjct: 278 AYFF 281
>sp|Q6P6G5|YIPF1_RAT Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1
Length = 306
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 15/244 (6%)
Query: 38 QTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLF 95
Q PPG+ G + LG++ + A K F++ Y +F+VDT V +R+
Sbjct: 40 QPRPPGSLGREE-DEELLGTNDSDETELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIK 98
Query: 96 SSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFD 153
SL P+ G F + I +NPDLYG WI TLVF +A GN + +L+ + + +
Sbjct: 99 GSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPE 157
Query: 154 VSFVNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSF 207
V++AA +Y YA +VPLA + L + S S S + C++GYSLFI++ T+
Sbjct: 158 FQKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAV 217
Query: 208 LLLIPIELLRWIIILLAGTTSSCFVAFNL-KSYMEGNDLTVL--VVASFCLQMALAIFIK 264
L +IP ++RW+++ +A S +A + E N L +V L + L++
Sbjct: 218 LWIIPQRVIRWVLVTIALGISGSVLAMTFWPAVREDNRRVALATIVTIMLLHVLLSVGCL 277
Query: 265 VWFF 268
+FF
Sbjct: 278 AYFF 281
>sp|Q99LP8|YIPF2_MOUSE Protein YIPF2 OS=Mus musculus GN=Yipf2 PE=2 SV=1
Length = 312
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 125/254 (49%), Gaps = 19/254 (7%)
Query: 10 SSHLLGSVP--AVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPA 67
+++LL P A S+ TS E + + G G G+ G + +S E++P
Sbjct: 15 ATNLLAETPDAATTSQSDELTSREHVAVVVGS---GIGYGAEVGEEEDDKTSLLQEEKPQ 71
Query: 68 NNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTL 125
F++ Y +F+VDT V++R+ SL P G F + + PDLYG WI TL
Sbjct: 72 PR---FWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATL 128
Query: 126 VFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 185
F+LA GN L Q+ + S +S V +A T+Y YA +VPLA + L++ +
Sbjct: 129 AFVLAVTGNLTLVLAQR-RDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGT 187
Query: 186 ASLVRFW------CLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSY 239
+ + C++GYSLF+F+ T L LIP++ ++W+ L S+ + F L
Sbjct: 188 RERMGLYTFLETVCVYGYSLFVFIPTVVLWLIPVQWIQWLFGALGLALSAAGLVFTLWPV 247
Query: 240 MEGNDLTVLVVASF 253
+ + T LV A+
Sbjct: 248 VRED--TRLVAAAL 259
>sp|Q9BWQ6|YIPF2_HUMAN Protein YIPF2 OS=Homo sapiens GN=YIPF2 PE=2 SV=1
Length = 316
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 72 GFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFML 129
GF++ S Y +F+VDT V++R+ SL P G F + + PDLYG WI TL F+L
Sbjct: 76 GFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPDLYGPFWICATLAFVL 135
Query: 130 ASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSA--- 186
A GN L Q+ + S +S V VA ++Y YA +VPLA + L++
Sbjct: 136 AVTGNLTLVLAQR-RDPSIHYSPQFHKVTVAGISIYCYAWLVPLALWGFLRWRKGVQERM 194
Query: 187 ---SLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL 236
+ + C++GYSLF+F+ L LIP+ L+W+ LA S+ + F L
Sbjct: 195 GPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSAAGLVFTL 247
>sp|Q5XIT3|YIPF2_RAT Protein YIPF2 OS=Rattus norvegicus GN=Yipf2 PE=2 SV=1
Length = 311
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 18/219 (8%)
Query: 10 SSHLLGSVP--AVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPA 67
+++LL P A S+ TS E + + G G G+ G + +S +++P
Sbjct: 15 AANLLAETPDAATTSQSDKLTSQEHVAVVVGS---GIGYGAE-GEEEDDKTSLLQDEKPQ 70
Query: 68 NNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTL 125
F++ Y +F+VDT V++R+ SL P G F + + PDLYG WI TL
Sbjct: 71 PR---FWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATL 127
Query: 126 VFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 185
F+LA GN L Q+ + S +S V +A T+Y YA +VPLA + L++ +
Sbjct: 128 AFVLAVTGNLTLVLAQR-RDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGT 186
Query: 186 ASLVRFW------CLWGYSLFIFVVTSFLLLIPIELLRW 218
+ + C++GYSLF+F+ T L LIP++ L+W
Sbjct: 187 RERMGLYTFLETVCVYGYSLFVFIPTVVLWLIPVQWLQW 225
>sp|Q9UTD3|YIP5_SCHPO Protein YIP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yip5 PE=3 SV=1
Length = 249
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 28 TSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDT 87
T++EA + Q P ++P L S ++ P W + FNV+T
Sbjct: 16 TTFEAEDLYKQRTPI-----TKPPAPRLQSRRASMQETP---W-------TIKDSFNVET 60
Query: 88 DIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSS 147
V+ R +L P + +FF +D PDLYG WI+TT++ L F N T +Y
Sbjct: 61 KDVVQRCIHTLIP-TVNFFDVVDDRPDLYGPFWITTTVIQALF-FSNSITE-YARYATGH 117
Query: 148 ASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSF 207
+ + + + AA +YGY ++ + + +L + + L+ CL+GY+ +++ S
Sbjct: 118 GTSGYSIKKLISAASIIYGYTTIIAVLLWGILVWNKCNPKLLDCLCLYGYANIVWLPVSL 177
>sp|Q3UDR8|YIPF3_MOUSE Protein YIPF3 OS=Mus musculus GN=Yipf3 PE=1 SV=1
Length = 347
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 13/193 (6%)
Query: 63 EQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWIS 122
++Q + + + +I YF+V+ V +RL S+ P+ F + A +LYG + +
Sbjct: 99 KRQASRAFSLYANIDILRPYFDVEPAQVRSRLLESMIPIKMVNFPQKVAG-ELYGPLMLV 157
Query: 123 TTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYM 182
TLV +L + ++++ T + A T +GY + V YFL
Sbjct: 158 FTLVAILLHGMKTSDTIIREGT-----------LMGTAIGTCFGYWLGVSSFIYFLAYLC 206
Query: 183 GSSASLVRFWCLWGYSLFIFVVTSFLLL-IPIELLRWIIILLAGTTSSCFVAFNLKSYME 241
+ ++++ L GY LF + F+ I + L ++ LL G S+ + L S
Sbjct: 207 NAQITMLQMLALLGYGLFGHCIVLFITYNIHLHALFYLFWLLVGGLSTLRMVAVLVSRTV 266
Query: 242 GNDLTVLVVASFC 254
G +L+ +
Sbjct: 267 GPTQRLLLCGTLA 279
>sp|Q6TUD4|YIPF3_RAT Protein YIPF3 OS=Rattus norvegicus GN=Yipf3 PE=2 SV=1
Length = 347
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 63 EQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWIS 122
++Q + + + +I YF+V+ V +RL S+ P+ F + A +LYG + +
Sbjct: 99 KRQASKAFSLYANIDILRPYFDVEPAQVRSRLLESMIPIKMVNFPQKVAG-ELYGPLMLV 157
Query: 123 TTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYM 182
TLV +L + ++++ T + A T +GY + V YFL
Sbjct: 158 FTLVAILLHGMKTSDTIIREGT-----------LMGTAIGTCFGYWLGVSSFIYFLAYLC 206
Query: 183 GSSASLVRFWCLWGYSLFIFVVTSFL 208
+ ++++ L GY LF + F+
Sbjct: 207 NAQITMLQMLALLGYGLFGHCIVLFI 232
>sp|Q9GZM5|YIPF3_HUMAN Protein YIPF3 OS=Homo sapiens GN=YIPF3 PE=1 SV=1
Length = 350
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 63 EQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWIS 122
++Q + + + +I YF+V+ V +RL S+ P+ F + A +LYG + +
Sbjct: 102 KRQASRAFSLYANIDILRPYFDVEPAQVRSRLLESMIPIKMVNFPQKIAG-ELYGPLMLV 160
Query: 123 TTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYM 182
TLV +L + ++++ T + A T +GY + V YFL
Sbjct: 161 FTLVAILLHGMKTSDTIIREGT-----------LMGTAIGTCFGYWLGVSSFIYFLAYLC 209
Query: 183 GSSASLVRFWCLWGYSLFIFVVTSFL 208
+ ++++ L GY LF + F+
Sbjct: 210 NAQITMLQMLALLGYGLFGHCIVLFI 235
>sp|P53108|YIP5_YEAST Protein YIP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YIP5 PE=1 SV=1
Length = 310
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 32/218 (14%)
Query: 76 ISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNC 135
I+ Y++YF +D RL + L + + N DLYG +WI+ T+V + +
Sbjct: 94 INYYSKYFQIDLTQFKKRLSAVLTFRNDHNSESNEDNTDLYGAVWITATVVMINFTMSRG 153
Query: 136 ATYLMQKYTNSSASWSFDVSFVNVAACTV------YGYAIVVPLAYYFLLQYMGSS---- 185
+++ + D+ + + YGY VP +L S
Sbjct: 154 LNFIISDVIEGVKTGE-DIDRASQFKKLLHSIWLFYGYTFGVPFITMQVLNRDEHSERNR 212
Query: 186 --ASLVRFWCLWGYSLFIFVVTSFLL--------LIPIELLRWIIILLAGTTSSCF---- 231
S+ ++GY+ I++ +L L ++ ++W I+ L SS F
Sbjct: 213 SFKSVPELISVYGYANLIWIPVCVILNILDMSKRLRTVQAIQWAIVALGWAQSSYFLNSQ 272
Query: 232 VAFNLKSYMEGN---DLTVLVVAS----FCLQMALAIF 262
++ N + + N L+++VV + FCL IF
Sbjct: 273 ISSNNNTETQSNGKFSLSIIVVVALHTLFCLLFRFIIF 310
>sp|Q803Z2|YIPF3_DANRE Protein YIPF3 OS=Danio rerio GN=yipf3 PE=2 SV=1
Length = 344
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 63 EQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWIS 122
++Q + + + +I YF+V+ V NRL SL P+ F + A +LYG + +
Sbjct: 100 KRQASKAFNLYANIDILRPYFDVEPIQVRNRLVESLIPVRMINFPQKVAG-ELYGPMMLV 158
Query: 123 TTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYM 182
TLV +L + ++++ T + A T +GY + V YFL
Sbjct: 159 FTLVAILLHGMKTSGTVIREGT-----------LMGTAIGTGFGYWLGVSSFIYFLAYLC 207
Query: 183 GSSASLVRFWCLWGYSLFIFVVTSFL 208
+ ++++ L GY LF V F+
Sbjct: 208 NAQITMLQMLSLLGYGLFGHCVVLFI 233
>sp|Q5F384|YIPF3_CHICK Protein YIPF3 OS=Gallus gallus GN=YIPF3 PE=2 SV=1
Length = 336
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 63 EQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSG-DFFSKIDANPDLYGLIWI 121
++Q + + + +I YF+V+ V RL S+ P+ +F KI +LYG + +
Sbjct: 97 KRQASKAFSLYANIDILRPYFDVEPVQVRTRLLESMVPVKMINFPQKIAG--ELYGPLML 154
Query: 122 STTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQY 181
TLV +L + ++++ T + A T +GY + V YFL
Sbjct: 155 VFTLVAILLHGMKTSDTIIREGT-----------LMGTAIGTCFGYWLGVSSFIYFLAYL 203
Query: 182 MGSSASLVRFWCLWGYSLFIFVVT 205
+ ++V+ L GY LF +T
Sbjct: 204 CNAQITMVQMLSLLGYGLFGHCIT 227
>sp|Q3B8G4|YIPF3_XENLA Protein YIPF3 OS=Xenopus laevis GN=yipf3 PE=2 SV=1
Length = 341
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 63 EQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWIS 122
++Q + + + +I YF+V+ V +RL S+ P+ F + A +LYG + +
Sbjct: 100 KRQASKAFNLYANIDILRPYFDVEPIQVRHRLLESMIPVKMISFPQKIAG-ELYGPLMLV 158
Query: 123 TTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYM 182
T+V +L SS + + + + A T +GY + V YFL
Sbjct: 159 FTMVAILL-----------HGMKSSGTIIREGTLMGTAIGTCFGYWLGVSSFIYFLAYLC 207
Query: 183 GSSASLVRFWCLWGYSLFIFVVTSFL 208
+ ++++ L GY LF + F+
Sbjct: 208 NAQITMLQTLSLLGYGLFGHCIVLFI 233
>sp|E9Q555|RN213_MOUSE E3 ubiquitin-protein ligase RNF213 OS=Mus musculus GN=Rnf213 PE=2
SV=1
Length = 5150
Score = 32.7 bits (73), Expect = 3.0, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 113 PDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAI 169
P GL T LV L S N Y +QK++N S+S D+S VA V Y +
Sbjct: 4816 PRRQGLGLCGTALVSYLISLHNNMVYTVQKFSNEDNSYSVDIS--EVADLHVISYEV 4870
>sp|Q7NN41|ATKA_GLOVI Potassium-transporting ATPase A chain OS=Gloeobacter violaceus
(strain PCC 7421) GN=kdpA PE=3 SV=1
Length = 575
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 42 PGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVI 91
PG G S PG+ L + ANN GF + T ++N+ T +V+
Sbjct: 451 PGLAGNSNPGFHGLTQVVYEYASAAANNGSGFEGLGDATPWWNLSTSVVL 500
>sp|A9IU75|CRCB_BORPD Protein CrcB homolog OS=Bordetella petrii (strain ATCC BAA-461 /
DSM 12804 / CCUG 43448) GN=crcB PE=3 SV=1
Length = 128
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 130 ASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAY 175
A+ G CA +L + NSSA W + VN+A + G A+ V LA+
Sbjct: 17 AALGACARWLAGLWLNSSA-WPWGTLLVNLAGGYLIGLALAVLLAH 61
>sp|P59524|RSMA_BUCBP Ribosomal RNA small subunit methyltransferase A OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rsmA PE=3 SV=1
Length = 260
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 73 FFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIW-ISTTL--VFML 129
FF+ + Q F VD++ VINR+ + ++P S DF I+ P L L + I L +F++
Sbjct: 7 FFANKNLGQNFLVDSE-VINRIINVINPKSHDFM--IEIGPGLGALTYPICKILHKLFVI 63
Query: 130 ASFGNCATYLMQKYTNSSA------SWSF----DVSFVNVAACTVYGYAIVVPLAYYF 177
N T L++ +N ++F + SF +V Y I +P+ +Y
Sbjct: 64 EHDNNLGTRLLKDISNIEVFVEDVLKFNFLNLINNSFKSVRIIGNLPYNISIPILFYL 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,290,648
Number of Sequences: 539616
Number of extensions: 4202222
Number of successful extensions: 13223
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 13180
Number of HSP's gapped (non-prelim): 44
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)